RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3001
(602 letters)
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 158 bits (401), Expect = 5e-45
Identities = 63/277 (22%), Positives = 119/277 (42%), Gaps = 52/277 (18%)
Query: 190 KDEWPEKGEVEFKDYKVRYREGL--------------ELVGIVGRTGAGKSSLTLALFRI 235
+ ++G ++ +Y + E V VG +G GKS+L + R
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 67
Query: 236 IEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFF 295
+ G I+IDG +I+ +LR+++ ++ Q
Sbjct: 68 YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQD--------------------------- 100
Query: 296 IQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-----IYSHFGETVTG 350
+++F++ VK I+ + V ++ + + P G ++G
Sbjct: 101 ---NILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSG 157
Query: 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNT 410
GQ+Q + +AR L ILILDEAT+A+DLE++ +IQ + T L +AHRL+T
Sbjct: 158 --GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 215
Query: 411 IIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
I +D+++V++ G +VE + L+ + + +
Sbjct: 216 ITHADKIVVIENGHIVETGTHRELIAKQ-GAYEHLYS 251
Score = 102 bits (257), Expect = 3e-25
Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ LS+ V VG +G GKS+L + R + G I+IDG +I+ +LR+++ +
Sbjct: 37 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 96
Query: 545 IPQDPVLFSGTLRLNL-DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ QD +LFS T++ N+ ++DE + +A ++A+ + F+ NLP EV E G L
Sbjct: 97 VQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 155
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 156 bits (396), Expect = 2e-44
Identities = 70/271 (25%), Positives = 124/271 (45%), Gaps = 51/271 (18%)
Query: 196 KGEVEFKDYKVRYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADG 241
G++EF++ Y + V +VGR+G+GKS++ + R + +G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 242 TIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLI 301
I++DG D+R L +LR+++ ++ Q V L
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQ-----------------------------NVHLF 101
Query: 302 FTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-----IYSHFGETVTGNVGQRQ 356
+ + +R ++ +++ I G ++G GQRQ
Sbjct: 102 NDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSG--GQRQ 159
Query: 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDR 416
I +ARALLR + ILILDEAT+A+D E++ IQ+ + + T L IAHRL+TI +D
Sbjct: 160 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADE 219
Query: 417 VLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
++V++ G++VE + S L+ ++ + K
Sbjct: 220 IVVVEDGIIVERGTHSELLAQH-GVYAQLHK 249
Score = 91.8 bits (228), Expect = 2e-21
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ L + V +VGR+G+GKS++ + R + +G I++DG D+R L +LR+++ +
Sbjct: 34 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 93
Query: 545 IPQDPVLFSGTLRLN--LDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ Q+ LF+ T+ N E S E I +A +A+ F++ + L + E G L
Sbjct: 94 VSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 153
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 150 bits (381), Expect = 2e-42
Identities = 68/269 (25%), Positives = 123/269 (45%), Gaps = 51/269 (18%)
Query: 198 EVEFKDYKVRYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTI 243
++ F++ + RY+ E++GIVGR+G+GKS+LT + R P +G +
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 244 IIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFT 303
+IDG D+ + LR ++ ++ Q +++
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQD------------------------------NVLLN 90
Query: 304 EDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-----IYSHFGETVTGNVGQRQLI 358
+ I + ++ + +S I G ++G GQRQ I
Sbjct: 91 RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSG--GQRQRI 148
Query: 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVL 418
+ARAL+ KILI DEAT+A+D E++ +I + TV+ IAHRL+T+ ++DR++
Sbjct: 149 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRII 208
Query: 419 VLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
V++KG +VE L+ S++ + +
Sbjct: 209 VMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
Score = 85.7 bits (212), Expect = 2e-19
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+GIVGR+G+GKS+LT + R P +G ++IDG D+ + LR ++ ++ QD VL +
Sbjct: 32 IGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNR 91
Query: 555 TLRLNLDPVGES-SDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
++ N+ S E + A +LA + F+S L V E G L
Sbjct: 92 SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGL 140
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 141 bits (357), Expect = 5e-39
Identities = 59/254 (23%), Positives = 102/254 (40%), Gaps = 41/254 (16%)
Query: 199 VEFKDYKVRYREGL-------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245
+ + Y + ++ G +G GKS++ L R +P G I I
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 246 DGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTED 305
DG I + L RS++ + Q A + +
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIR---------------------------E 94
Query: 306 VKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTG-NVGQRQLICLARAL 364
+ ++ + V + + + GE + GQRQ + +ARA
Sbjct: 95 NLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF 154
Query: 365 LRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGL 424
LR KIL+LDEATA++D E++ ++Q + S T L IAHRL+TI+D+D++ ++KG
Sbjct: 155 LRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQ 214
Query: 425 VVEFDSPSVLMKNK 438
+ + L+
Sbjct: 215 ITGSGKHNELVATH 228
Score = 89.2 bits (221), Expect = 1e-20
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ G +G GKS++ L R +P G I IDG I + L RS++ + QD + +G
Sbjct: 31 IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG 90
Query: 555 TLRLNLD--PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+R NL G+ +DE +W+ L+LA +FV N+P +L EV E G +
Sbjct: 91 TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKI 140
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 141 bits (356), Expect = 7e-39
Identities = 60/270 (22%), Positives = 109/270 (40%), Gaps = 44/270 (16%)
Query: 193 WPEKGEVEFKDYKVRYREGL---------------ELVGIVGRTGAGKSSLTLALFRIIE 237
+G V+F+D Y E+ +VG G+GKS++ L + +
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 238 PADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQ 297
P G +++DG + L ++ + Q + S+ I
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQ---------------EPQVFGRSL-QENIA 109
Query: 298 VSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357
L ++ + S F + L + + G ++G GQRQ
Sbjct: 110 YGLTQKPTMEEITAAAVKSGAHSF-------ISGLPQGYDTEV-DEAGSQLSG--GQRQA 159
Query: 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNTIIDSD 415
+ LARAL+RK +LILD+AT+A+D + ++ + E +VL I L+ + +D
Sbjct: 160 VALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQAD 219
Query: 416 RVLVLDKGLVVEFDSPSVLMKNKASIFYSM 445
+L L+ G + E + LM+ K +++M
Sbjct: 220 HILFLEGGAIREGGTHQQLMEKK-GCYWAM 248
Score = 95.7 bits (238), Expect = 8e-23
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+VG G+GKS++ L + +P G +++DG + L ++ + Q+P +F
Sbjct: 43 TALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR 102
Query: 555 TLRLNL--DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+L+ N+ + + E I A + ++F+S LP EV E G L
Sbjct: 103 SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQL 152
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 125 bits (315), Expect = 7e-33
Identities = 50/298 (16%), Positives = 104/298 (34%), Gaps = 64/298 (21%)
Query: 166 VAVERI-----KEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGL-------- 212
+ +E + + +GE ++ + + ++ V F + L
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQ--QSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIE 60
Query: 213 --ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLA 270
E++ I G TG+GK+SL + + +E ++G I G R++ Q
Sbjct: 61 KGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQF-- 105
Query: 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330
S I +K II + R+
Sbjct: 106 ----------------------------SWIMPGTIKENIIFGVSYDEYRYKSVVKACQL 137
Query: 331 RLESVSRSPIYSHFGETVTGN--VGQRQLICLARALLRKTKILILDEATAAIDLET-DDL 387
+ + + + GQR I LARA+ + + +LD +D+ T + +
Sbjct: 138 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 197
Query: 388 IQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSM 445
+S + A+ T + + ++ + +D++L+L +G + + S L + F S
Sbjct: 198 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQ-SLRPDFSSK 254
Score = 78.8 bits (194), Expect = 9e-17
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 13/108 (12%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ I G TG+GK+SL + + +E ++G I G R++ Q + G
Sbjct: 65 LAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPG 111
Query: 555 TLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T++ N+ + ++ L ++ + + EGG L
Sbjct: 112 TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTL 159
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 93.1 bits (231), Expect = 4e-22
Identities = 38/257 (14%), Positives = 81/257 (31%), Gaps = 56/257 (21%)
Query: 199 VEFKDYKVRYR---------EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249
++ +D R G E++ +VG GAGKS+L + + G+I G
Sbjct: 4 MQLQDVAESTRLGPLSGEVRAG-EILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQP 61
Query: 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPL 309
+ L + Q F
Sbjct: 62 LEAWSATKLALHRAYLSQQQTPPF----------------------------------AT 87
Query: 310 IITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKT- 368
+ + + Q T +++ ++G G+ Q + LA +L+ T
Sbjct: 88 PVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSG--GEWQRVRLAAVVLQITP 145
Query: 369 ------KILILDEATAAIDLETDDLIQSTIRS-EFAHCTVLTIAHRLNTIID-SDRVLVL 420
++L+LDE ++D+ + + + ++ +H LN + + R +L
Sbjct: 146 QANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLL 205
Query: 421 DKGLVVEFDSPSVLMKN 437
G ++ ++
Sbjct: 206 KGGKMLASGRREEVLTP 222
Score = 51.9 bits (124), Expect = 5e-08
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 4/100 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP-VLFS 553
+ +VG GAGKS+L + + G+I G + L + Q F+
Sbjct: 28 LHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFA 86
Query: 554 GTLRLNLDPV--GESSDEAIWKALELAHLNTFVSNLPARL 591
+ L ++ E + L+ + +L
Sbjct: 87 TPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQL 126
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 90.7 bits (225), Expect = 3e-21
Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 29/219 (13%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E V I+G +G+GKS++ + + +P +G + ID + L L
Sbjct: 32 EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK------------ 79
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
I + + F Q +LI + P + R+ + L
Sbjct: 80 -------------IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRAL 126
Query: 333 ESVSRSPIYSHFGETVTGNV--GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS 390
E + + + F + GQ+Q + +ARAL I++ D+ T A+D +T + I
Sbjct: 127 ECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQ 186
Query: 391 TIRS--EFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427
++ E TV+ + H +N +R++ L G V
Sbjct: 187 LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
Score = 55.2 bits (133), Expect = 3e-09
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 15/129 (11%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RS 540
V L++ V I+G +G+GKS++ + + +P +G + ID + L L R
Sbjct: 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRD 83
Query: 541 RLTIIPQDPVLFSG---------TLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARL 591
++ + Q L L S +E +ALE +
Sbjct: 84 KIGFVFQQFNLIPLLTALENVELPLIFKYRG-AMSGEERRKRALECLKMAELEERFANHK 142
Query: 592 QHEVSEGGE 600
+++S GG+
Sbjct: 143 PNQLS-GGQ 150
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 89.6 bits (222), Expect = 9e-21
Identities = 52/236 (22%), Positives = 100/236 (42%), Gaps = 37/236 (15%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVL 269
++ G++G +GAGKS+L + + P +G++++DG ++ TL R ++ +I Q
Sbjct: 32 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ-- 89
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL 329
+L+ + V + P + R
Sbjct: 90 ---------------------------HFNLLSSRTVFGNVALPLELDNTPKDEVKRRVT 122
Query: 330 KRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
+ L V + + ++G GQ+Q + +ARAL K+L+ DEAT+A+D T I
Sbjct: 123 ELLSLVGLGDKHDSYPSNLSG--GQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 390 STIRS--EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
++ T+L I H ++ + D V V+ G ++E D+ S + + +
Sbjct: 181 ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPL 236
Score = 54.5 bits (131), Expect = 6e-09
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQDPVL 551
G++G +GAGKS+L + + P +G++++DG ++ TL R ++ +I Q L
Sbjct: 34 YGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 93
Query: 552 FS-----GTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSE--GGE 600
S G + L L+ DE + EL L L + S GG+
Sbjct: 94 LSSRTVFGNVALPLELDNTPKDEVKRRVTELLSL----VGLGDKHDSYPSNLSGGQ 145
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 87.3 bits (216), Expect = 7e-20
Identities = 46/235 (19%), Positives = 92/235 (39%), Gaps = 22/235 (9%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQ 267
+G ++ I+G G+GKS+L + ++ +G + + DI L + Q
Sbjct: 28 NKG-DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQ 86
Query: 268 VLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR 327
+ V +++ SL + + + + +
Sbjct: 87 TPQPLK----EMTVLENLLIGEICPGESPLNSLFYKKWIP------------KEEEMVEK 130
Query: 328 QLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDL 387
K LE + S +Y ++G GQ +L+ + RAL+ K++++DE A +
Sbjct: 131 AFKILEFLKLSHLYDRKAGELSG--GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 188
Query: 388 IQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKAS 440
I + + A T L I HRL+ +++ D + V+ G ++ +KN S
Sbjct: 189 IFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLS 243
Score = 46.5 bits (110), Expect = 3e-06
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQDPVLF 552
I+G G+GKS+L + ++ +G + + DI L + Q P
Sbjct: 33 TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 91
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 86.0 bits (213), Expect = 1e-19
Identities = 44/261 (16%), Positives = 101/261 (38%), Gaps = 50/261 (19%)
Query: 198 EVEFKDYKVRY-------------REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTII 244
EV+ ++ R+ ++G E + ++G +G GK++ + + EP +G I
Sbjct: 6 EVKLENLTKRFGNFTAVNKLNLTIKDG-EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 245 IDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTE 304
D+ L ++++ Q ++
Sbjct: 65 FGDRDVTYLPPK--DRNISMVFQ-----------------------------SYAVWPHM 93
Query: 305 DVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARAL 364
V I P R E + + + + ++G GQRQ + +ARA+
Sbjct: 94 TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSG--GQRQRVAVARAI 151
Query: 365 LRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNTIID-SDRVLVLD 421
+ + +L++DE + +D + +++ I+ + T + + H + DR+ V++
Sbjct: 152 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMN 211
Query: 422 KGLVVEFDSPSVLMKNKASIF 442
+G +++ SP+ + S+F
Sbjct: 212 RGQLLQIGSPTEVYLRPNSVF 232
Score = 50.2 bits (120), Expect = 2e-07
Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 14/114 (12%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ ++G +G GK++ + + EP +G I D+ L ++++ Q ++
Sbjct: 35 LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPH 92
Query: 555 -----TLRLNLDPVGESSDEAIWKALELA-------HLNTFVSNLPARLQHEVS 596
+ L DE + A LN + + L + V+
Sbjct: 93 MTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVA 146
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 85.3 bits (211), Expect = 3e-19
Identities = 46/234 (19%), Positives = 96/234 (41%), Gaps = 22/234 (9%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
+++ I+G +G+GKS+ + + +P++G II++G +I + + ++ Q+
Sbjct: 29 DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQL---- 84
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFY-VATSRQLKR 331
++ + F +L V ++ L A R LK
Sbjct: 85 ------------RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKY 132
Query: 332 LESVSRSP-IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAID-LETDDLIQ 389
L V + ++ GQ+Q + +ARAL + +L+ DE T+A+D ++++
Sbjct: 133 LAKVGIDERAQGKYPVHLS--GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR 190
Query: 390 STIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ T++ + H + S V+ L +G + E P + N S
Sbjct: 191 IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPR 244
Score = 57.2 bits (138), Expect = 1e-09
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-------------LHTLRSR 541
+ I+G +G+GKS+ + + +P++G II++G +I + L LR+R
Sbjct: 31 ISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR 90
Query: 542 LTIIPQDPVLFS------GTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEV 595
LT++ Q L+S + + +G S +A +AL+ + +
Sbjct: 91 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL 150
Query: 596 SEG 598
S G
Sbjct: 151 SGG 153
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 84.6 bits (209), Expect = 4e-19
Identities = 40/233 (17%), Positives = 86/233 (36%), Gaps = 30/233 (12%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E + ++G +G GK++ + + EP+ G I I +
Sbjct: 30 EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP----------- 78
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
+ F +L V I P R +
Sbjct: 79 --------------KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVA 124
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
E + + + + ++G GQRQ + L RA++RK ++ ++DE + +D + +++ +
Sbjct: 125 ELLGLTELLNRKPRELSG--GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL 182
Query: 393 RS--EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ T + + H + DR+ V+++G++ + SP + A+ F
Sbjct: 183 KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
Score = 41.5 bits (97), Expect = 2e-04
Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 15/117 (12%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR----SRLTIIPQDPV 550
+ ++G +G GK++ + + EP+ G I I + + ++ Q
Sbjct: 32 MILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91
Query: 551 LFSGTLRLN-----LDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSE--GGE 600
L+ + L E + E+A L L L + E GG+
Sbjct: 92 LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAEL----LGLTELLNRKPRELSGGQ 144
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 78.5 bits (193), Expect = 5e-17
Identities = 41/233 (17%), Positives = 80/233 (34%), Gaps = 36/233 (15%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E V VG +G GKS+L + + G + I + + ++ Q
Sbjct: 27 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPPAERGVGMVFQ----- 79
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
+L V + + V R +
Sbjct: 80 ------------------------SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
E + + + + ++G GQRQ + + R L+ + + +LDE + +D ++ I
Sbjct: 116 EVLQLAHLLDRKPKALSG--GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI 173
Query: 393 RS--EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ T++ + H + +D+++VLD G V + P L A F
Sbjct: 174 SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF 226
Score = 44.9 bits (106), Expect = 9e-06
Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 8/109 (7%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V VG +G GKS+L + + G + I + + ++ Q L+
Sbjct: 29 VVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPPAERGVGMVFQSYALYPH 86
Query: 555 T-----LRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEG 598
+ L G + + ++A + +++L R +S G
Sbjct: 87 LSVAENMSFGLKLAGAKKEVINQRVNQVAEV-LQLAHLLDRKPKALSGG 134
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 75.4 bits (185), Expect = 7e-16
Identities = 44/256 (17%), Positives = 100/256 (39%), Gaps = 48/256 (18%)
Query: 197 GEVEFKDYKVRY-------------REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTI 243
G V KD + R EG E+ G++G GAGK++ + +I+P+ G +
Sbjct: 1 GAVVVKDLRKRIGKKEILKGISFEIEEG-EIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 59
Query: 244 IIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFT 303
+ G ++ H +R ++ +P+ + + + V+ +
Sbjct: 60 TVFGKNVVEE-PHEVRKLISYLPEEAG--------------AYRNMQGIEYLRFVAGFYA 104
Query: 304 EDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARA 363
+ V + ++ L + + ++ + G + + +ARA
Sbjct: 105 SSSSEI----------EEMVERATEIAGLGEKIKDRVSTY-------SKGMVRKLLIARA 147
Query: 364 LLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLD 421
L+ ++ ILDE T+ +D+ ++ ++ T+L +H + + DR+ ++
Sbjct: 148 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIH 207
Query: 422 KGLVVEFDSPSVLMKN 437
G +VE + L +
Sbjct: 208 NGTIVETGTVEELKER 223
Score = 45.0 bits (106), Expect = 9e-06
Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
G++G GAGK++ + +I+P+ G + + G ++ H +R ++ +P++ +
Sbjct: 31 FGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLISYLPEEAGAYRN 89
Query: 555 -----TLRLNLDPVGESSDEA---IWKALELAHLNTFVSNLPARLQH 593
LR SS E + +A E+A L + + +
Sbjct: 90 MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSK 136
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 74.6 bits (183), Expect = 1e-15
Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 33/235 (14%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268
G ++V ++G GAGK++ A+ ++ G II +G DI H + +
Sbjct: 30 PRG-QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVP- 87
Query: 269 LATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQ 328
+F + V +++ ++R
Sbjct: 88 --------EGRRIFPELTVYENLMM--------------GAYNRKDKEGIKRDLEWIFSL 125
Query: 329 LKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLI 388
RL+ + + G G++Q++ + RAL+ + K+L++DE + + +
Sbjct: 126 FPRLKERLKQLGGTLSG-------GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 389 QSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASI 441
I+ T+L + + + VL+ G +V S L+ N+
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMVR 233
Score = 38.0 bits (88), Expect = 0.002
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI-IPQDPVLFS 553
V ++G GAGK++ A+ ++ G II +G DI H + +P+ +F
Sbjct: 35 VTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFP 94
Query: 554 G-TLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSE--GGE 600
T+ NL + + +L + + L RL+ GGE
Sbjct: 95 ELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGE 144
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 72.7 bits (178), Expect = 5e-15
Identities = 53/248 (21%), Positives = 96/248 (38%), Gaps = 40/248 (16%)
Query: 196 KGEVEFKDYK--VRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253
+ E +++ V + G + ++G TGAGKS + I++P G + ++G DI L
Sbjct: 6 RAEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL 65
Query: 254 GLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP 313
R + +PQ A +F + + V
Sbjct: 66 PPE--RRGIGFVPQDYA-LFPHLSVYRNIAYGLRNVE----------------------- 99
Query: 314 FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILIL 373
R + E + + + ++ G+RQ + LARAL+ + ++L+L
Sbjct: 100 -------RVERDRRVREMAEKLGIAHLLDRKPARLS--GGERQRVALARALVIQPRLLLL 150
Query: 374 DEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430
DE +A+DL+T ++ +R +L + H L +D V V+ G +VE
Sbjct: 151 DEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210
Query: 431 PSVLMKNK 438
L K
Sbjct: 211 LKELFSAK 218
Score = 52.7 bits (126), Expect = 3e-08
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 6/107 (5%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
++G TGAGKS + I++P G + ++G DI L R + +PQD LF
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPH 84
Query: 555 TLRLN---LDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEG 598
E + E+A +L R +S G
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGG 130
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 72.0 bits (176), Expect = 9e-15
Identities = 54/264 (20%), Positives = 94/264 (35%), Gaps = 49/264 (18%)
Query: 198 EVEFKDYKVRYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTI 243
+ K+ +++G E GI+G +GAGK++ + + P+ G +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 244 IIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFT 303
D + + G + I V T + T
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENI------------------- 103
Query: 304 EDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN--VGQRQLICLA 361
L ++ KR+E V++ H Q+Q + LA
Sbjct: 104 -----------AFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA 152
Query: 362 RALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNTIID-SDRVL 418
RAL++ +L+LDE + +D D ++ ++ T+L ++H I +DRV
Sbjct: 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVG 212
Query: 419 VLDKGLVVEFDSPSVLMKNKASIF 442
VL KG +V+ P L N SI
Sbjct: 213 VLVKGKLVQVGKPEDLYDNPVSIQ 236
Score = 41.6 bits (97), Expect = 1e-04
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR---LTIIPQDPVL 551
GI+G +GAGK++ + + P+ G + D + + G + + ++ Q L
Sbjct: 34 FGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93
Query: 552 F 552
+
Sbjct: 94 Y 94
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 68.0 bits (166), Expect = 9e-14
Identities = 44/237 (18%), Positives = 82/237 (34%), Gaps = 57/237 (24%)
Query: 200 EFKDYKVRY------------REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
E +D V Y +G +V G G GK++L + ++P G II +G
Sbjct: 4 EIRDLSVGYDKPVLERITMTIEKG-NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG 62
Query: 248 VDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVK 307
V I ++ ++ +P+ + + + +K
Sbjct: 63 VPI-----TKVKGKIFFLPE-------------------------EIIVPRKISVEDYLK 92
Query: 308 PLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRK 367
++L V + + LESV + GE + G + + LA LL
Sbjct: 93 ------AVASLYGVKVNKNEIMDALESVEVLDLKKKLGEL---SQGTIRRVQLASTLLVN 143
Query: 368 TKILILDEATAAIDLETDDLIQSTIRSEFAH--CTVLTIAHRLNTIIDSDRVLVLDK 422
+I +LD+ AID ++ + +I +++ L+ D L K
Sbjct: 144 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSY---CDVNENLHK 197
Score = 45.7 bits (108), Expect = 4e-06
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V G G GK++L + ++P G II +GV I ++ ++ +P++ ++
Sbjct: 30 VNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPI-----TKVKGKIFFLPEEIIVPRK 84
Query: 555 -TLRLNLDPVGE-----SSDEAIWKALELAHL 580
++ L V + I ALE +
Sbjct: 85 ISVEDYLKAVASLYGVKVNKNEIMDALESVEV 116
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 62.8 bits (152), Expect = 1e-11
Identities = 47/233 (20%), Positives = 86/233 (36%), Gaps = 39/233 (16%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E I+G TGAGK+ + P G I++DG D+ L + + + Q +
Sbjct: 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT--DLSPEKHDIAFVYQNYS-- 82
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
+ P + ++ + + P R L
Sbjct: 83 -------------LFPHMNVKKNLEFGMRMKKIKDP-----------------KRVLDTA 112
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
+ + T++ G++Q + LARAL+ KIL+LDE +A+D T + + +
Sbjct: 113 RDLKIEHLLDRNPLTLS--GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML 170
Query: 393 RS--EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ TVL I H +DR+ V+ G +++ P + +
Sbjct: 171 SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223
Score = 41.6 bits (97), Expect = 1e-04
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 7/102 (6%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
I+G TGAGK+ + P G I++DG D+ L + + + Q+ LF
Sbjct: 29 FVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT--DLSPEKHDIAFVYQNYSLFPH 86
Query: 555 -----TLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARL 591
L + + + + + P L
Sbjct: 87 MNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTL 128
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 52.8 bits (125), Expect = 4e-08
Identities = 36/271 (13%), Positives = 81/271 (29%), Gaps = 50/271 (18%)
Query: 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG------ 254
D V ++EG+ I+G+ G+GKSSL A+ + I + +G
Sbjct: 14 HSDTVVEFKEGI--NLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYI 71
Query: 255 -------------------------LHTLRSRLTIIPQ---------VLATIFVICYSTP 280
+H ++ + + + A + +
Sbjct: 72 DLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNI 131
Query: 281 VFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPI 340
+ + + ++ + + + + + V +
Sbjct: 132 FLNAIYIRQGQIDAILESAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVV 191
Query: 341 YSHFGETVTGNVG-QRQLICLA------RALLRKTKILILDEATAAIDLETDDLIQSTIR 393
+ +T G +R + LA L + +LILDE T +D E + + +
Sbjct: 192 WEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIME 251
Query: 394 S-EFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423
V+ ++H +D V+ +
Sbjct: 252 RYLKKIPQVILVSHDEELKDAADHVIRISLE 282
Score = 29.0 bits (63), Expect = 1.5
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 496 GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 529
I+G+ G+GKSSL A+ + I +
Sbjct: 27 LIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDE 60
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 50.8 bits (120), Expect = 5e-08
Identities = 11/80 (13%), Positives = 23/80 (28%)
Query: 493 MQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF 552
M++ I G G GK++L + + + V T +T + +
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 553 SGTLRLNLDPVGESSDEAIW 572
S + +
Sbjct: 61 SKFFTSKKLVGSYGVNVQYF 80
Score = 45.0 bits (105), Expect = 5e-06
Identities = 8/75 (10%), Positives = 19/75 (25%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
A + K++I+DE + V+ +
Sbjct: 85 IPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHP 144
Query: 413 DSDRVLVLDKGLVVE 427
+ L +++E
Sbjct: 145 LVKEIRRLPGAVLIE 159
Score = 43.1 bits (100), Expect = 2e-05
Identities = 9/53 (16%), Positives = 17/53 (32%)
Query: 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
+ I G G GK++L + + + V T +T +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGK 55
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 50.6 bits (119), Expect = 3e-07
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNT 410
+G + ++ L + +LILDE T +D E + + + V+ ++H
Sbjct: 287 LGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 346
Query: 411 IIDSDRVLVLDK 422
+D V+ +
Sbjct: 347 KDAADHVIRISL 358
Score = 31.0 bits (68), Expect = 0.45
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLAL 232
D V ++EG+ I+G+ G+GKSSL A+
Sbjct: 14 HSDTVVEFKEGI--NLIIGQNGSGKSSLLDAI 43
Score = 28.3 bits (61), Expect = 3.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 496 GIVGRTGAGKSSLTLAL 512
I+G+ G+GKSSL A+
Sbjct: 27 LIIGQNGSGKSSLLDAI 43
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 40.8 bits (94), Expect = 2e-04
Identities = 9/72 (12%), Positives = 21/72 (29%)
Query: 492 AMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL 551
A V + G G GK++L +++ + + + G + + +
Sbjct: 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGP 60
Query: 552 FSGTLRLNLDPV 563
S
Sbjct: 61 LSRVGLEPPPGK 72
Score = 36.5 bits (83), Expect = 0.004
Identities = 20/194 (10%), Positives = 50/194 (25%), Gaps = 25/194 (12%)
Query: 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFV 274
V + G G GK++L +++ + + + G + + + +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLES 334
+ P + + +L F L+ +
Sbjct: 64 VGLEPPPGKR-----------------------ECRVGQYVVDLTSFEQLALPVLRNADC 100
Query: 335 VSRSPIYSHFGETVTGN-VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR 393
S + + + + I R L +IL + L++
Sbjct: 101 SSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKG-KPLALVEEIRN 159
Query: 394 SEFAHCTVLTIAHR 407
+ +T +R
Sbjct: 160 RKDVKVFNVTKENR 173
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 37.6 bits (86), Expect = 0.003
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 3/110 (2%)
Query: 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT-LGLHTLRSRLTIIPQVLATIF 273
VGI G G GKS+ AL ++ A + + VD + ++ T + ++
Sbjct: 54 VGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRN 113
Query: 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYV 323
+P + + + + DV +++ V
Sbjct: 114 AFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDV--ILVETVGVGQSETAV 161
Score = 36.4 bits (83), Expect = 0.007
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 492 AMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 532
A++VGI G G GKS+ AL ++ A + + VD +
Sbjct: 51 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 91
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 34.0 bits (76), Expect = 0.020
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 493 MQVGIVGRTGAGKSSLTLAL 512
M+V I GR AGKSSL AL
Sbjct: 2 MKVVIAGRPNAGKSSLLNAL 21
Score = 32.4 bits (72), Expect = 0.077
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 215 VGIVGRTGAGKSSLTLAL 232
V I GR AGKSSL AL
Sbjct: 4 VVIAGRPNAGKSSLLNAL 21
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 34.2 bits (77), Expect = 0.020
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 15/94 (15%)
Query: 495 VGIVGRTGAGKSSLTLAL----FRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV 550
VG+VG AGKSSL A+ +I T+ LG+ + D
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSP------NLGVVEVSEEERFTLADIP 57
Query: 551 LFSGTLRLNLDPVGESSDEAIWKALELAHLNTFV 584
+ G+ + + + +V
Sbjct: 58 GI-----IEGASEGKGLGLEFLRHIARTRVLLYV 86
Score = 32.7 bits (73), Expect = 0.080
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 215 VGIVGRTGAGKSSLTLAL 232
VG+VG AGKSSL A+
Sbjct: 4 VGLVGYPNAGKSSLLAAM 21
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 33.9 bits (76), Expect = 0.025
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 490 SYAMQVGIVGRTGAGKSSLTLALFR 514
+Y+ V IVG+ GKS+L L
Sbjct: 3 TYSGFVAIVGKPNVGKSTLLNNLLG 27
Score = 33.6 bits (75), Expect = 0.034
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 215 VGIVGRTGAGKSSLTLALFR 234
V IVG+ GKS+L L
Sbjct: 8 VAIVGKPNVGKSTLLNNLLG 27
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 33.5 bits (75), Expect = 0.034
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 490 SYAMQVGIVGRTGAGKSSLTLALFR 514
SY + IVGR GKS+L L
Sbjct: 3 SYCGFIAIVGRPNVGKSTLLNKLLG 27
Score = 32.8 bits (73), Expect = 0.061
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 215 VGIVGRTGAGKSSLTLALFR 234
+ IVGR GKS+L L
Sbjct: 8 IAIVGRPNVGKSTLLNKLLG 27
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 33.6 bits (75), Expect = 0.037
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 215 VGIVGRTGAGKSSLTLALFR 234
V IVGR GKS+L L +
Sbjct: 3 VLIVGRPNVGKSTLFNKLVK 22
Score = 33.6 bits (75), Expect = 0.037
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 495 VGIVGRTGAGKSSLTLALFR 514
V IVGR GKS+L L +
Sbjct: 3 VLIVGRPNVGKSTLFNKLVK 22
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 33.6 bits (75), Expect = 0.042
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFR 234
GL + + GR+ GKSS +L
Sbjct: 20 EGGLPEIALAGRSNVGKSSFINSLIN 45
Score = 32.8 bits (73), Expect = 0.078
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 494 QVGIVGRTGAGKSSLTLALFR 514
++ + GR+ GKSS +L
Sbjct: 25 EIALAGRSNVGKSSFINSLIN 45
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 33.5 bits (75), Expect = 0.044
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 492 AMQVGIVGRTGAGKSSLTLALFR 514
A++V IVGR GKS+L A+
Sbjct: 8 AIKVAIVGRPNVGKSTLFNAILN 30
Score = 32.7 bits (73), Expect = 0.074
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFR 234
+ ++ V IVGR GKS+L A+
Sbjct: 6 TDAIK-VAIVGRPNVGKSTLFNAILN 30
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 32.6 bits (73), Expect = 0.057
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 493 MQVGIVGRTGAGKSSLTLALFR 514
+++ IVG+ GKS+L L
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLN 22
Score = 30.3 bits (67), Expect = 0.38
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 215 VGIVGRTGAGKSSLTLALFR 234
+ IVG+ GKS+L L
Sbjct: 3 MVIVGKPNVGKSTLLNRLLN 22
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 33.5 bits (75), Expect = 0.069
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE-FAHCTVLTIAHRLNTIIDSDR 416
+ A + + +LDE AA+D+ I + IR + I+ + SD
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDA 404
Score = 30.5 bits (67), Expect = 0.71
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 214 LVGIVGRTGAGKSSLTLAL 232
I+G G+GKS++ A+
Sbjct: 27 FTSIIGPNGSGKSNMMDAI 45
Score = 29.3 bits (64), Expect = 1.5
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 496 GIVGRTGAGKSSLTLAL 512
I+G G+GKS++ A+
Sbjct: 29 SIIGPNGSGKSNMMDAI 45
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 32.7 bits (73), Expect = 0.077
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 215 VGIVGRTGAGKSSLTLALFR 234
+ GR+ GKS+L L
Sbjct: 3 IIFAGRSNVGKSTLIYRLTG 22
Score = 32.7 bits (73), Expect = 0.077
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 495 VGIVGRTGAGKSSLTLALFR 514
+ GR+ GKS+L L
Sbjct: 3 IIFAGRSNVGKSTLIYRLTG 22
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 33.3 bits (75), Expect = 0.080
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 492 AMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 533
+++G+ G GAGKS+ A ++ + + VD +
Sbjct: 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSP 95
Score = 32.5 bits (73), Expect = 0.13
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253
+G+ G GAGKS+ A ++ + + VD +
Sbjct: 57 LGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSP 95
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 33.0 bits (74), Expect = 0.10
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 493 MQVGIVGRTGAGKSSL 508
M++G+VG+ GKS+
Sbjct: 1 MEIGVVGKPNVGKSTF 16
Score = 29.1 bits (64), Expect = 1.5
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 13/74 (17%)
Query: 215 VGIVGRTGAGKSSLTLAL-----------FRIIEPADGT--IIIDGVDIRTLGLHTLRSR 261
+G+VG+ GKS+ A F IE G I D ++
Sbjct: 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNY 62
Query: 262 LTIIPQVLATIFVI 275
L + ++
Sbjct: 63 EYRNGLALIPVKMV 76
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 32.2 bits (73), Expect = 0.10
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 477 KETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLAL----FRIIEPADGTIIIDGVDIRT 532
+ +++ LV + Y + V I G +G GKS L L R+I AD + + D +T
Sbjct: 2 RRSMHGVLVDI---YGLGVLITGDSGVGKSETALELVQRGHRLI--ADDRVDVYQQDEQT 56
Query: 533 L 533
+
Sbjct: 57 I 57
Score = 30.3 bits (68), Expect = 0.45
Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 11/82 (13%)
Query: 215 VGIVGRTGAGKSSLTLALFR-----------IIEPADGTIIIDGVDIRTLGLHTLRSRLT 263
V I G +G GKS L L + + D I+ L +R
Sbjct: 17 VLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGI 76
Query: 264 IIPQVLATIFVICYSTPVFIFV 285
I L + T + + V
Sbjct: 77 IDVMNLFGAGAVREDTTISLIV 98
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 32.5 bits (73), Expect = 0.11
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 493 MQVGIVGRTGAGKSSLTLALFR----IIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQD 548
+ + ++G+ G GKSS ++ I P + R+ TL T +
Sbjct: 33 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 92
Query: 549 P 549
Sbjct: 93 G 93
Score = 29.4 bits (65), Expect = 0.99
Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 21/118 (17%)
Query: 215 VGIVGRTGAGKSSLTLALFR----IIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ--- 267
+ ++G+ G GKSS ++ I P + R+ TL T
Sbjct: 35 ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 94
Query: 268 -------VLATIFVICYSTPVFIFVIVPVSV------LYFFIQVSLIFTEDV-KPLII 311
+ F++ + V ++V + ++ F + + I+
Sbjct: 95 YINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIV 152
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 31.8 bits (71), Expect = 0.12
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 215 VGIVGRTGAGKSSLTLAL 232
VG+VG GKS+L +
Sbjct: 4 VGLVGFPSVGKSTLLSVV 21
Score = 31.8 bits (71), Expect = 0.12
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 495 VGIVGRTGAGKSSLTLAL 512
VG+VG GKS+L +
Sbjct: 4 VGLVGFPSVGKSTLLSVV 21
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 32.5 bits (73), Expect = 0.13
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 14/72 (19%)
Query: 493 MQVGIVGRTGAGKSSLTLAL------------FRIIEPADGTIIIDGVDIRTLGLHTLRS 540
++ GIVG GKS+ A+ + I+P + + + D R L
Sbjct: 11 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVP--DERFDWLCEAYK 68
Query: 541 RLTIIPQDPVLF 552
+ +P +F
Sbjct: 69 PKSRVPAFLTVF 80
Score = 29.0 bits (64), Expect = 1.7
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 205 KVRY-REGLEL-VGIVGRTGAGKSSLTLAL------------FRIIEPADGTIIID 246
KV++ R G L GIVG GKS+ A+ + I+P + + +
Sbjct: 1 KVQWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVP 56
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 30.5 bits (67), Expect = 0.35
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 492 AMQVGIVGRTGAGKSSLTLALFR 514
++V GR+ AGKSS L
Sbjct: 16 GIEVAFAGRSNAGKSSALNTLTN 38
Score = 30.1 bits (66), Expect = 0.54
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 215 VGIVGRTGAGKSSLTLALFR 234
V GR+ AGKSS L
Sbjct: 19 VAFAGRSNAGKSSALNTLTN 38
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 30.9 bits (69), Expect = 0.40
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 493 MQVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 526
+ V + G TG+GKSS L I +G
Sbjct: 57 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTG 90
Score = 30.5 bits (68), Expect = 0.61
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246
V + G TG+GKSS L I +G
Sbjct: 59 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTG 90
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 30.7 bits (69), Expect = 0.40
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 11/45 (24%)
Query: 492 AMQVGIVGRTGAGKSSLTLAL-----------FRIIEPADGTIII 525
+ GIVG GKS+L AL F IEP G + +
Sbjct: 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPM 46
Score = 26.8 bits (59), Expect = 7.1
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 11/42 (26%)
Query: 215 VGIVGRTGAGKSSLTLAL-----------FRIIEPADGTIII 245
GIVG GKS+L AL F IEP G + +
Sbjct: 5 CGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPM 46
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 30.8 bits (69), Expect = 0.44
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 2/91 (2%)
Query: 160 DVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGLELVGIVG 219
V+ +V ++ ++ E V + RY G+ +V G
Sbjct: 73 SVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIV--TG 130
Query: 220 RTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250
+ +GK+ L AL + D + +
Sbjct: 131 KGNSGKTPLVHALGEALGGKDKYATVRFGEP 161
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 30.4 bits (67), Expect = 0.45
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 490 SYAMQVGIVGRTGAGKSSLTLAL 512
SY + I G +GK+SL L
Sbjct: 1 SYQPSIIIAGPQNSGKTSLLTLL 23
Score = 28.1 bits (61), Expect = 2.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 215 VGIVGRTGAGKSSLTLAL 232
+ I G +GK+SL L
Sbjct: 6 IIIAGPQNSGKTSLLTLL 23
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter
MsbA, N-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 319
Score = 30.7 bits (67), Expect = 0.50
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 147 ITQTLNWLVRMTSDVETNIVAVERIKEYGETPQE 180
+ + L L + + + + A + + ++ QE
Sbjct: 285 LMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 29.9 bits (67), Expect = 0.52
Identities = 16/82 (19%), Positives = 23/82 (28%), Gaps = 11/82 (13%)
Query: 215 VGIVGRTGAGKSSLTLALFR-----------IIEPADGTIIIDGVDIRTLGLHTLRSRLT 263
V I G +G GKS L L + I +I L +R
Sbjct: 18 VLITGDSGIGKSETALELIKRGHRLVADDNVEIREISKDELIGRAPKLIEHLLEIRGLGI 77
Query: 264 IIPQVLATIFVICYSTPVFIFV 285
I L I + + +
Sbjct: 78 INVMTLFGAGSILTEKRLRLNI 99
Score = 29.5 bits (66), Expect = 0.63
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Query: 479 TLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLAL----FRIIEPADGTIIIDGVDIRTL 533
+L+ LV + Y + V I G +G GKS L L R++ AD + I + L
Sbjct: 5 SLHGVLVDV---YGVGVLITGDSGIGKSETALELIKRGHRLV--ADDNVEIREISKDEL 58
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 30.3 bits (68), Expect = 0.53
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245
++ + G +GAG S++ +I +
Sbjct: 6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVS 37
Score = 29.5 bits (66), Expect = 0.94
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIII 525
+ + G +GAG S++ +I +
Sbjct: 7 ISVTGSSGAGTSTVKHTFDQIFRREGVKAVS 37
>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin
hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii
[TaxId: 2190]}
Length = 242
Score = 30.3 bits (68), Expect = 0.58
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 7/88 (7%)
Query: 498 VGRTGAGKSSLTLALFRIIEPA--DGTIIID-----GVDIRTLGLHTLRSRLTIIPQDPV 550
+ T K + + + A +G I+ + R L I P
Sbjct: 144 IVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPG 203
Query: 551 LFSGTLRLNLDPVGESSDEAIWKALELA 578
G +S+EA+ K E+
Sbjct: 204 CVPEMKGQVYIAEGYASEEAVNKLYEIG 231
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 29.3 bits (64), Expect = 0.66
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
+++ +G G+GKS T A I G I+ D R
Sbjct: 3 KIILTIGCPGSGKS--TWAR-EFIAKNPGFYNINRDDYR 38
Score = 27.8 bits (60), Expect = 2.8
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 531
+G G+GKS T A I G I+ D R
Sbjct: 7 TIGCPGSGKS--TWAR-EFIAKNPGFYNINRDDYR 38
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 30.0 bits (66), Expect = 0.68
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 201 FKDYKVRYREGLE--LVGIVGRTGAGKSSLTLAL 232
FK + G + IVG G+GKS++ A+
Sbjct: 11 FKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAI 44
Score = 28.5 bits (62), Expect = 2.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 497 IVGRTGAGKSSLTLAL 512
IVG G+GKS++ A+
Sbjct: 29 IVGPNGSGKSNIIDAI 44
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 29.3 bits (64), Expect = 0.80
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 215 VGIVGRTGAGKSSLTLALFRI 235
+GI G GK++L+ L I
Sbjct: 8 LGIFGHIDHGKTTLSKVLTEI 28
Score = 29.3 bits (64), Expect = 0.80
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 495 VGIVGRTGAGKSSLTLALFRI 515
+GI G GK++L+ L I
Sbjct: 8 LGIFGHIDHGKTTLSKVLTEI 28
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 29.9 bits (66), Expect = 0.89
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 214 LVGIVGRTGAGKSSLTLAL 232
IVG G+GKS++ A+
Sbjct: 28 FTAIVGANGSGKSNIGDAI 46
Score = 29.2 bits (64), Expect = 1.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 497 IVGRTGAGKSSLTLAL 512
IVG G+GKS++ A+
Sbjct: 31 IVGANGSGKSNIGDAI 46
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 29.3 bits (64), Expect = 0.99
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 493 MQVGIVGRTGAGKSSLTLAL 512
M++ I+G GAGK+++ L
Sbjct: 6 MRILILGLDGAGKTTILYRL 25
Score = 27.8 bits (60), Expect = 2.6
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 215 VGIVGRTGAGKSSLTLAL 232
+ I+G GAGK+++ L
Sbjct: 8 ILILGLDGAGKTTILYRL 25
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 29.0 bits (64), Expect = 1.1
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 493 MQV-GIVGRTGAGKSSLTLALFRIIEPADGTIII 525
M V +VG +GK++L +
Sbjct: 1 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGT 34
Score = 28.3 bits (62), Expect = 1.7
Identities = 5/31 (16%), Positives = 10/31 (32%)
Query: 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIII 245
+VG +GK++L +
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGT 34
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 28.9 bits (63), Expect = 1.1
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 493 MQVGIVGRTGAGKSSLTLAL 512
M++ +VG +GK++ +
Sbjct: 3 MELTLVGLQYSGKTTFVNVI 22
Score = 27.0 bits (58), Expect = 4.4
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 215 VGIVGRTGAGKSSLTLAL 232
+ +VG +GK++ +
Sbjct: 5 LTLVGLQYSGKTTFVNVI 22
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 28.8 bits (64), Expect = 1.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 215 VGIVGRTGAGKSSLTLAL 232
V + GR+G GKS L L
Sbjct: 18 VLLTGRSGIGKSECALDL 35
Score = 28.8 bits (64), Expect = 1.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 495 VGIVGRTGAGKSSLTLAL 512
V + GR+G GKS L L
Sbjct: 18 VLLTGRSGIGKSECALDL 35
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 29.0 bits (63), Expect = 1.3
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249
++GI G + +GK++L L + + ++ + +D
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59
Score = 28.2 bits (61), Expect = 2.5
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 529
+GI G + +GK++L L + + ++ + +D
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 28.8 bits (63), Expect = 1.5
Identities = 13/187 (6%), Positives = 50/187 (26%), Gaps = 13/187 (6%)
Query: 214 LVGIVGRTGAGKSSLTLAL--------FRIIEPADGTIIIDGVDIRTLGLHTLRSRLTII 265
+V + G G G ++ + + G+++ + + L + R ++ +
Sbjct: 3 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEV--AKEENLVSDRDQMRKM 60
Query: 266 PQVLATIFVICYSTPV--FIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYV 323
+ + + + + ++ +L
Sbjct: 61 DPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVE 120
Query: 324 ATSRQLKRLESVSRSPIYSHFGETVTGNVGQ-RQLICLARALLRKTKILILDEATAAIDL 382
T ++ + + + + ++ +L + I+ +D
Sbjct: 121 TTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQ 180
Query: 383 ETDDLIQ 389
++L
Sbjct: 181 AVEELTN 187
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 28.8 bits (63), Expect = 1.5
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 213 ELVGIVGRTGAGKSSLTLAL 232
E++ + +G GKS+
Sbjct: 36 EVIMVTSGSGMGKSTFVRQQ 55
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 28.8 bits (63), Expect = 1.6
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250
L+G+ G T +GKSS+ + +++ + V I
Sbjct: 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVI 40
Score = 27.6 bits (60), Expect = 3.4
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530
+G+ G T +GKSS+ + +++ + V I
Sbjct: 5 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVI 40
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 28.0 bits (61), Expect = 2.2
Identities = 10/114 (8%), Positives = 29/114 (25%)
Query: 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFV 274
+ +G GK++L L + + + + + + A +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTI 64
Query: 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQ 328
+ + P ++ LI+ + + + R
Sbjct: 65 VASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRD 118
Score = 27.3 bits (59), Expect = 3.9
Identities = 5/42 (11%), Positives = 13/42 (30%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH 536
+ +G GK++L L + + + +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVD 46
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 27.7 bits (60), Expect = 2.4
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 493 MQVGIVGRTGAGKSSLTLAL 512
+++ ++G AGK+++
Sbjct: 3 LRLLMLGLDNAGKTTILKKF 22
Score = 26.9 bits (58), Expect = 5.2
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 217 IVGRTGAGKSSLTLAL 232
++G AGK+++
Sbjct: 7 MLGLDNAGKTTILKKF 22
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 323
Score = 28.3 bits (61), Expect = 2.7
Identities = 4/34 (11%), Positives = 15/34 (44%)
Query: 147 ITQTLNWLVRMTSDVETNIVAVERIKEYGETPQE 180
+ L LV + + + +++R+ + + +
Sbjct: 290 LFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYD 323
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 28.1 bits (61), Expect = 2.7
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 215 VGIVGRTGAGKSSLTLAL 232
V ++G GK++L +
Sbjct: 8 VSVLGHVDHGKTTLLDHI 25
Score = 28.1 bits (61), Expect = 2.7
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 495 VGIVGRTGAGKSSLTLAL 512
V ++G GK++L +
Sbjct: 8 VSVLGHVDHGKTTLLDHI 25
>d3dhxa1 d.58.18.13 (A:2-100) Methionine import ATP-binding
protein MetN {Escherichia coli [TaxId: 562]}
Length = 99
Score = 26.6 bits (59), Expect = 2.8
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 20 NILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRS 58
NI+ + M + G M++ + + + +L+
Sbjct: 49 NIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAI-AWLQE 86
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 27.7 bits (60), Expect = 2.8
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
L I G G GKS+ L + D + I+G I
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQL---DNSAYIEGDIIN 38
Score = 26.5 bits (57), Expect = 7.2
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 531
I G G GKS+ L + D + I+G I
Sbjct: 7 ITGPAGVGKSTTCKRLAAQL---DNSAYIEGDIIN 38
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.5 bits (60), Expect = 2.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 490 SYAMQVGIVGRTGAGKSSLTLAL 512
SY + I+G TG GKS L L
Sbjct: 1 SYLFKYIIIGDTGVGKSCLLLQF 23
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 27.8 bits (60), Expect = 3.1
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIID 246
++G G GKS+L + + +
Sbjct: 6 LLGAPGVGKSALARIFGGVEDGPEAEAAGH 35
Score = 27.8 bits (60), Expect = 3.1
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIID 526
++G G GKS+L + + +
Sbjct: 6 LLGAPGVGKSALARIFGGVEDGPEAEAAGH 35
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 28.2 bits (62), Expect = 3.1
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 214 LVGIVGRTGAGKSSLTLALFRII 236
+ G G+GKS ++ ++ +
Sbjct: 29 FIFFSGPQGSGKSFTSIQIYNHL 51
Score = 27.8 bits (61), Expect = 4.0
Identities = 10/85 (11%), Positives = 27/85 (31%), Gaps = 16/85 (18%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ G G+GKS ++ ++ + + + + D +
Sbjct: 30 IFFSGPQGSGKSFTSIQIYNHL----------------MEKYGGEKSIGYASIDDFYLTH 73
Query: 555 TLRLNLDPVGESSDEAIWKALELAH 579
+L L+ +++ + L H
Sbjct: 74 EDQLKLNEQFKNNKLLQGRGLPGTH 98
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 28.1 bits (61), Expect = 3.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 213 ELVGIVGRTGAGKSSLTLAL 232
+ +V GAGKS L L L
Sbjct: 30 TVGALVSPGGAGKSMLALQL 49
Score = 26.5 bits (57), Expect = 9.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 497 IVGRTGAGKSSLTLAL 512
+V GAGKS L L L
Sbjct: 34 LVSPGGAGKSMLALQL 49
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 27.6 bits (60), Expect = 3.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 490 SYAMQVGIVGRTGAGKSSLTLAL 512
+Y+ +V ++G GK+SL L
Sbjct: 1 AYSFKVVLLGEGCVGKTSLVLRY 23
>d2opla1 d.227.1.1 (A:4-185) Hypothetical protein GSU2788 {Geobacter
sulfurreducens [TaxId: 35554]}
Length = 182
Score = 27.7 bits (61), Expect = 3.3
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 523 IIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNT 582
I + GV R G LR L + + PV + +R+ + +D + + +A +
Sbjct: 106 IALRGVKSRYEGDIDLRGFLGLSEEVPVGYR-EIRVFFSIDADLTDGQKEELIRMAQKYS 164
Query: 583 FVSNL 587
V N
Sbjct: 165 PVYNT 169
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 27.7 bits (60), Expect = 3.7
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 215 VGIVGRTGAGKSSLTLAL 232
V VG +GK+ L + L
Sbjct: 3 VLFVGLCDSGKTLLFVRL 20
Score = 27.7 bits (60), Expect = 3.7
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 495 VGIVGRTGAGKSSLTLAL 512
V VG +GK+ L + L
Sbjct: 3 VLFVGLCDSGKTLLFVRL 20
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 27.3 bits (59), Expect = 3.9
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
Query: 493 MQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQD 548
M++ +VG AGK+++ L G I+ I ++ D
Sbjct: 1 MRILMVGLDAAGKTTILYKL------KLGEIVTTIPTIGFNVETVEYKNISFTVWD 50
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.3 bits (59), Expect = 3.9
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 215 VGIVGRTGAGKSSLTLAL----FRIIEPADGTIII 245
+ +G AGK++L L ++P
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE 37
Score = 27.3 bits (59), Expect = 3.9
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 495 VGIVGRTGAGKSSLTLAL----FRIIEPADGTIII 525
+ +G AGK++L L ++P
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE 37
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 27.4 bits (59), Expect = 4.1
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 492 AMQVGIVGRTGAGKSSLTLAL 512
A+++ +VG GKSS+
Sbjct: 2 AIKMVVVGNGAVGKSSMIQRY 22
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 27.6 bits (60), Expect = 4.6
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 170 RIKEYGETPQEAEWVNDKKPKDEWPEKGE-VEFKDYKVRYREGLELVGIVGRTGAGKS-S 227
+ + V+ K K EK + V + + + G TG GKS
Sbjct: 7 GGAPFKRFLRGTRIVSGGKLKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVL 66
Query: 228 LTLALFRIIEPADGTIIID 246
L + + D +I+D
Sbjct: 67 LRELAYTGLLRGDRMVIVD 85
Score = 26.8 bits (58), Expect = 9.7
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 497 IVGRTGAGKS-SLTLALFRIIEPADGTIIID 526
+ G TG GKS L + + D +I+D
Sbjct: 55 VNGATGTGKSVLLRELAYTGLLRGDRMVIVD 85
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 26.8 bits (58), Expect = 5.4
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 491 YAMQVGIVGRTGAGKSSLTLAL 512
Y ++ I+G + GK+S
Sbjct: 4 YMFKILIIGNSSVGKTSFLFRY 25
Score = 26.4 bits (57), Expect = 7.7
Identities = 5/30 (16%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 203 DYKVRYREGLELVGIVGRTGAGKSSLTLAL 232
++ ++ + I+G + GK+S
Sbjct: 1 NFDYMFK-----ILIIGNSSVGKTSFLFRY 25
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 26.8 bits (58), Expect = 6.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 491 YAMQVGIVGRTGAGKSSLTLAL 512
A +V +VG +G GK+ L +
Sbjct: 5 VAFKVMLVGDSGVGKTCLLVRF 26
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 26.5 bits (58), Expect = 6.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 215 VGIVGRTGAGKSSLTLALFRII 236
VG +G GK++LT A+ +I+
Sbjct: 6 VGTIGHVDHGKTTLTAAITKIL 27
Score = 26.5 bits (58), Expect = 6.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 495 VGIVGRTGAGKSSLTLALFRII 516
VG +G GK++LT A+ +I+
Sbjct: 6 VGTIGHVDHGKTTLTAAITKIL 27
>d2qrra1 d.58.18.13 (A:2-98) Methionine import ATP-binding protein
MetN {Vibrio parahaemolyticus [TaxId: 670]}
Length = 97
Score = 25.5 bits (56), Expect = 7.0
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 20 NILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRS 58
+IL S + + G M++ + + + + +LR
Sbjct: 48 SILSSDLDYAGGVKFGMMVAELFGNEQDDSAAI-EYLRE 85
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 26.4 bits (57), Expect = 7.4
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 491 YAMQVGIVGRTGAGKSSLTLAL 512
Y +++ +G +G GK++
Sbjct: 4 YLIKLLALGDSGVGKTTFLYRY 25
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 27.0 bits (59), Expect = 7.4
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 215 VGIVGRTGAGKSSLTLAL 232
+ ++ GKS+LT +L
Sbjct: 20 MSVIAHVDHGKSTLTDSL 37
Score = 27.0 bits (59), Expect = 7.4
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 495 VGIVGRTGAGKSSLTLAL 512
+ ++ GKS+LT +L
Sbjct: 20 MSVIAHVDHGKSTLTDSL 37
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 26.6 bits (58), Expect = 8.5
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 215 VGIVGRTGAGKSSLTLAL-------FRIIEPADGTIIID 246
+GI AGK++ T + +I E +G +D
Sbjct: 9 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMD 47
Score = 26.6 bits (58), Expect = 8.5
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 495 VGIVGRTGAGKSSLTLAL-------FRIIEPADGTIIID 526
+GI AGK++ T + +I E +G +D
Sbjct: 9 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMD 47
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 26.1 bits (56), Expect = 8.7
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
++ + G G+GKS++ AL P + D+
Sbjct: 6 ILLLSGHPGSGKSTIAEALAN--LPGVPKVHFHSDDLW 41
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 26.4 bits (57), Expect = 8.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 491 YAMQVGIVGRTGAGKSSLTLAL 512
Y +V ++G +G GKS+L
Sbjct: 3 YLFKVVLIGDSGVGKSNLLSRF 24
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 26.1 bits (56), Expect = 9.1
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 493 MQVGIVGRTGAGKSSLTLAL 512
+++ ++G AGK++L L
Sbjct: 17 VRILLLGLDNAGKTTLLKQL 36
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 26.5 bits (57), Expect = 9.4
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLAL 232
F E + + G GAGKS+ A
Sbjct: 15 FFARTFDLDELVTT--LSGGNGAGKSTTMAAF 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.398
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,155,039
Number of extensions: 102224
Number of successful extensions: 668
Number of sequences better than 10.0: 1
Number of HSP's gapped: 639
Number of HSP's successfully gapped: 197
Length of query: 602
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 511
Effective length of database: 1,158,166
Effective search space: 591822826
Effective search space used: 591822826
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.1 bits)