BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3002
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics
pdb|3IUG|B Chain B, Crystal Structure Of The Rhogap Domain Of Rics
Length = 229
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 89/119 (74%), Gaps = 1/119 (0%)
Query: 84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
RH FD + +PDL T + VQDIHSV SL K+YFRELPNPL TYQLY F AV + ++
Sbjct: 71 RHEFDSEHVPDL-TKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEE 129
Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
+L ++ + +++LPPPHYRTLE+L+ HLS +A + T M A+N+AIVWAPNLLR K++E
Sbjct: 130 RLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIE 188
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|B Chain B, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|C Chain C, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|D Chain D, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
Length = 214
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%)
Query: 81 CITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSK 140
I + F ++ L DD+ +DIH V LKM+FRELP PL Y + FV A+++
Sbjct: 65 TIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQD 124
Query: 141 LQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCK 199
++ ++ V+KLPPP+ T++ L GHL+++ A K M+ +++ IV+ P LLR +
Sbjct: 125 NNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAE 183
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin
Length = 202
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 59/100 (59%)
Query: 103 QDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRT 162
+DI+ + LK+YFR+LP PL TY Y F+ + + +QL + E ++ LPP H T
Sbjct: 77 EDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCET 136
Query: 163 LEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
L YL+ HL RV H + M A N+ IV+ P L+R EL+
Sbjct: 137 LRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELD 176
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 60/103 (58%)
Query: 100 TIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPH 159
+ +DI+ + LK+YFR+LP PL TY Y F+ + + +QL + E ++ LPP H
Sbjct: 335 NMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAH 394
Query: 160 YRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
TL YL+ HL RV H + M A N+ IV+ P L+R EL+
Sbjct: 395 CETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELD 437
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 55/94 (58%)
Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTL 163
DI+ + LK+YFR+LP P+ TY Y F+ A + S ++L + E + LPP HY TL
Sbjct: 342 DINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETL 401
Query: 164 EYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197
YL+ HL +V + M A N+ IV+ P L+R
Sbjct: 402 RYLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMR 435
>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase
Regulator Associated With Focal Adhesion Kinase
Length = 231
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 56/97 (57%)
Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTL 163
+I ++ S LK Y R LP PL YQ SF+ A + + +++++ V +LP + + L
Sbjct: 93 EIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQML 152
Query: 164 EYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
L+ HL++VA + + MT N+ +V+ P LLR +E
Sbjct: 153 HLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQE 189
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX
Length = 203
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTL 163
++H A +LK + RELP PL T+ LY VG + + Q ++ + ++ LP +Y+ L
Sbjct: 74 ELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQVLQTLPEENYQVL 132
Query: 164 EYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
+L L +++AH D+ MT N+A+V+ PNLL K+
Sbjct: 133 RFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 169
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap
Length = 234
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTL 163
++H A +LK + RELP PL T+ LY VG + + Q ++ + ++ LP +Y+ L
Sbjct: 105 ELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQVLQTLPEENYQVL 163
Query: 164 EYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
+L L +++AH D+ MT N+A+V+ PNLL K+
Sbjct: 164 RFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 200
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1RGP|A Chain A, Gtpase-Activation Domain From Rhogap
Length = 242
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTL 163
++H A +LK + RELP PL T+ LY VG + + Q ++ + ++ LP +Y+ L
Sbjct: 113 ELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQVLQTLPEENYQVL 171
Query: 164 EYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
+L L +++AH D+ MT N+A+V+ PNLL K+
Sbjct: 172 RFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 208
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|B Chain B, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|C Chain C, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 199
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTL 163
++H A +LK + RELP PL T+ LY VG + + Q ++ + ++ LP +Y+ L
Sbjct: 78 ELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQVLQTLPEENYQVL 136
Query: 164 EYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
+L L +++AH D+ MT N+A+V+ PNLL K+
Sbjct: 137 RFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 173
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 198
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 105 IHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLE 164
+H A +LK + RELP PL T+ LY VG + + Q ++ + ++ LP +Y+ L
Sbjct: 78 LHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQVLQTLPEENYQVLR 136
Query: 165 YLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
+L L +++AH D+ MT N+A+V+ PNLL K+
Sbjct: 137 FLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 172
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|B Chain B, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|C Chain C, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|D Chain D, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
Length = 246
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 87 FDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLT 146
FD+D DL D V ++VA +K +F ELP+PL Y + V A + + + +L
Sbjct: 106 FDQDHNLDLAEKDFTV---NTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLH 162
Query: 147 QMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197
++E ++K P ++ +Y+I HL++V+ + MT+ N++I + P L+R
Sbjct: 163 ALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMR 213
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho
Gtpase Activating Protein 5 Variant
Length = 209
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 87 FDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLT 146
FD+D +L + + V ++VA LK +F +LP+PL Y L+ + A + ++L
Sbjct: 65 FDQDHNINLVSMEVTV---NAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLH 121
Query: 147 QMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197
++E V+K P +Y Y+I HL+RV+ MTA N++I + P L+R
Sbjct: 122 ALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMR 172
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap
Domain From Human Rho Gtpase Activating Protein 5
Variant
Length = 219
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 87 FDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLT 146
FD+D +L + + V ++VA LK +F +LP+PL Y L+ + A + ++L
Sbjct: 75 FDQDHNINLVSMEVTV---NAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLH 131
Query: 147 QMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197
++E V+K P +Y Y+I HL+RV+ MTA N++I + P L+R
Sbjct: 132 ALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMR 182
>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating
Protein 1 (Racgap1) Mgcracgap
Length = 201
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 102 VQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYR 161
V DIH++ SLLK + R L PL T++L +F+ A + + + + M + V +LP +
Sbjct: 67 VDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRD 126
Query: 162 TLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLL 196
TL +L+ HL RV A T M N+A V+ P ++
Sbjct: 127 TLAFLMIHLQRV-AQSPHTKMDVANLAKVFGPTIV 160
>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 201
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%)
Query: 103 QDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRT 162
+ I +AS+LK + R +P + + LY +V + Q ++++ ++ +++LP +
Sbjct: 75 ESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQLPRANVVL 134
Query: 163 LEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLL 196
L YL G L + H MTA N+A+ AP++L
Sbjct: 135 LRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSIL 168
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain
Length = 228
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%)
Query: 103 QDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRT 162
Q + VA +LK YFR+LP PL T +L +F+ Q +L ++ + LP +
Sbjct: 86 QSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREV 145
Query: 163 LEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
L+ L+ LS V A + MT N+A+ AP+L L+
Sbjct: 146 LQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLK 185
>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain
pdb|1PBW|B Chain B, Structure Of Bcr-Homology (Bh) Domain
Length = 216
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPP-PH--Y 160
D+H +A K Y +LPNP+ +Y + + + ++ Q+ + + + P PH +
Sbjct: 75 DVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYW 134
Query: 161 RTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197
TL+YL+ H +++ K + AR ++ +++P L R
Sbjct: 135 LTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFR 171
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|B Chain B, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|C Chain C, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|D Chain D, Crystal Structure Of The Rhogap Domain Of Arhgap11a
Length = 271
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 108 VASLLKMYFRELPNPLCTYQLYHSFVGAVQ-QSKLQDQLTQMRETVEKLPPPHYRTLEYL 166
+A LLK +FRELP P+ L+ + + A Q ++ +++ T + + L L Y
Sbjct: 135 IAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCL--LADHTVHVLRYF 192
Query: 167 IGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
L V+ + M + N+A+++APNLL+ E
Sbjct: 193 FNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSE 226
>pdb|2QV2|A Chain A, A Role Of The Lowe Syndrome Protein Ocrl In Early Steps Of
The Endocytic Pathway
Length = 342
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 94 DLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVE 153
D +TI HSVA L ++ LP P+ Y+LY + + ++ R+ +
Sbjct: 214 DTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRI------CRQVIS 267
Query: 154 KLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197
+LP H YL+ L + + + A +A ++ LLR
Sbjct: 268 QLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLR 311
>pdb|3QIS|A Chain A, Recognition Of The F&h Motif By The Lowe Syndrome Protein
Ocrl
Length = 366
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 94 DLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVE 153
D +TI HSVA L ++ LP P+ Y+LY + + ++ R+ +
Sbjct: 238 DTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRI------CRQVIS 291
Query: 154 KLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197
+LP H YL+ L + + + A +A ++ LLR
Sbjct: 292 QLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLR 335
>pdb|2XS6|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Pik3r2
Length = 214
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYR-- 161
D ++A +K + LP PL T + A + L++ + +E P +R
Sbjct: 82 DTAALADGIKSFLLALPAPLVTPE-----ASAEARRALREAAGPVGPALEPPTLPLHRAL 136
Query: 162 TLEYLIGHLSRVAAHGDKTGMTARNVAIVWA 192
TL +L+ HL RVA G R + +
Sbjct: 137 TLRFLLQHLGRVARRAPALGPAVRALGATFG 167
>pdb|2HWK|A Chain A, Crystal Structure Of Venezuelan Equine Encephalitis
Alphavirus Nsp2 Protease Domain
Length = 320
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 67 DQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTY 126
D + L S P++PL I + +D P++Y + V L + +LP + T
Sbjct: 60 DLDSGLFSAPTVPLSIRNNHWDNSPSPNMYGLNK------EVVRQLSRRYPQLPRAVATG 113
Query: 127 QLYHSFVGAVQQ 138
++Y G ++
Sbjct: 114 RVYDMNTGTLRN 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,790,148
Number of Sequences: 62578
Number of extensions: 262080
Number of successful extensions: 384
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 24
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)