Query psy3002
Match_columns 240
No_of_seqs 221 out of 1490
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 23:00:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04372 RhoGAP_chimaerin RhoGA 100.0 8E-46 1.7E-50 305.9 16.6 191 29-230 2-194 (194)
2 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 2.7E-44 5.9E-49 298.8 16.4 199 27-234 4-203 (203)
3 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 1.4E-43 3E-48 291.9 16.5 189 30-230 4-193 (193)
4 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 1.4E-43 3.1E-48 294.6 16.0 183 40-234 6-204 (206)
5 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 1.8E-43 3.8E-48 291.5 16.0 188 29-233 3-191 (192)
6 cd04390 RhoGAP_ARHGAP22_24_25 100.0 2.1E-43 4.5E-48 292.7 16.4 177 41-230 20-199 (199)
7 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 3.5E-43 7.7E-48 288.6 16.1 185 29-225 2-187 (187)
8 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 2.7E-43 5.9E-48 291.9 15.5 186 29-225 2-200 (200)
9 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 4E-43 8.6E-48 294.7 15.3 194 27-231 4-215 (220)
10 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 3.3E-43 7.1E-48 290.3 14.4 189 28-225 3-195 (195)
11 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 6.2E-43 1.3E-47 291.2 16.1 182 38-232 5-198 (208)
12 cd04407 RhoGAP_myosin_IXB RhoG 100.0 9.1E-43 2E-47 285.6 16.5 181 33-225 5-186 (186)
13 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 1.2E-42 2.7E-47 287.4 15.7 182 39-230 14-196 (196)
14 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 2.5E-42 5.4E-47 282.8 16.1 183 29-226 1-184 (184)
15 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 1.6E-42 3.4E-47 283.5 14.1 163 41-232 18-181 (182)
16 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 3.4E-42 7.4E-47 288.7 16.2 195 29-232 3-207 (216)
17 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 2.8E-42 6E-47 284.5 14.9 189 29-230 2-192 (192)
18 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 1.3E-42 2.9E-47 285.2 12.8 185 28-225 3-188 (188)
19 cd04406 RhoGAP_myosin_IXA RhoG 100.0 3.8E-42 8.3E-47 281.9 14.9 179 34-224 6-185 (186)
20 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 3.6E-42 7.7E-47 285.3 14.4 178 35-225 21-203 (203)
21 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 5.1E-42 1.1E-46 285.1 14.5 186 29-225 2-203 (203)
22 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 8.3E-42 1.8E-46 285.2 15.6 186 29-225 2-211 (211)
23 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 7.2E-42 1.6E-46 286.1 15.1 177 42-231 26-208 (213)
24 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 1.7E-41 3.6E-46 280.4 14.9 174 41-230 21-195 (195)
25 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 2.5E-41 5.3E-46 280.6 15.8 183 39-237 16-200 (202)
26 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 2.3E-41 5.1E-46 285.1 14.6 181 38-230 27-225 (225)
27 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 5.7E-41 1.2E-45 276.9 15.7 165 29-202 2-167 (196)
28 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 1.6E-40 3.4E-45 272.4 15.9 175 34-225 6-181 (185)
29 cd04377 RhoGAP_myosin_IX RhoGA 100.0 2E-40 4.3E-45 272.0 16.4 181 33-225 5-186 (186)
30 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 8.9E-41 1.9E-45 275.0 14.0 179 29-232 3-189 (190)
31 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 2.3E-40 4.9E-45 272.6 14.6 166 41-225 13-183 (200)
32 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 4.6E-40 9.9E-45 273.5 15.9 179 39-226 14-206 (207)
33 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 4.4E-40 9.5E-45 274.8 14.0 193 29-232 2-210 (212)
34 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 7.5E-40 1.6E-44 269.3 15.1 171 40-225 17-189 (189)
35 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 2.7E-38 5.8E-43 259.4 15.3 165 42-225 20-187 (187)
36 smart00324 RhoGAP GTPase-activ 100.0 3.4E-36 7.3E-41 244.1 16.0 170 43-226 3-174 (174)
37 KOG4407|consensus 100.0 1E-36 2.2E-41 292.2 11.5 173 59-233 1184-1357(1973)
38 KOG1451|consensus 100.0 2.1E-35 4.5E-40 266.8 12.1 221 4-234 348-571 (812)
39 cd00159 RhoGAP RhoGAP: GTPase- 100.0 1.5E-34 3.2E-39 232.5 15.7 167 45-225 3-169 (169)
40 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 5.8E-34 1.2E-38 239.5 9.6 180 5-202 6-197 (220)
41 KOG4270|consensus 100.0 2.4E-33 5.2E-38 258.8 13.8 172 59-235 177-348 (577)
42 KOG2200|consensus 100.0 2.1E-33 4.6E-38 254.3 12.7 195 28-231 301-511 (674)
43 KOG1450|consensus 100.0 1.4E-32 3E-37 254.6 12.0 190 30-231 459-649 (650)
44 KOG4269|consensus 100.0 7.8E-33 1.7E-37 259.3 8.2 176 37-237 913-1090(1112)
45 KOG1117|consensus 100.0 3.3E-32 7.1E-37 254.2 12.1 201 11-233 698-899 (1186)
46 PF00620 RhoGAP: RhoGAP domain 100.0 1.4E-32 3E-37 217.7 6.1 140 59-201 10-149 (151)
47 KOG3564|consensus 100.0 1.2E-29 2.5E-34 225.2 13.2 179 42-232 361-540 (604)
48 KOG2710|consensus 100.0 1.3E-29 2.8E-34 226.0 12.6 183 42-231 93-292 (412)
49 KOG4406|consensus 100.0 1.4E-29 3.1E-34 222.2 8.4 167 60-235 282-450 (467)
50 KOG1453|consensus 99.9 8.3E-27 1.8E-31 229.4 8.9 190 38-238 613-810 (918)
51 KOG1452|consensus 99.8 1.1E-20 2.4E-25 161.2 7.2 178 39-226 196-377 (442)
52 KOG4271|consensus 99.8 1.1E-20 2.4E-25 178.8 4.0 155 32-196 921-1076(1100)
53 cd04405 RhoGAP_BRCC3-like RhoG 99.8 4E-18 8.7E-23 141.4 13.3 153 67-231 59-229 (235)
54 KOG4724|consensus 99.8 1.1E-19 2.4E-24 167.3 3.8 171 60-237 107-277 (741)
55 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.7 2.6E-17 5.7E-22 135.1 13.0 140 60-201 17-167 (198)
56 KOG4370|consensus 99.3 2.2E-12 4.9E-17 114.2 5.7 157 59-232 81-273 (514)
57 KOG3565|consensus 99.3 1.9E-12 4E-17 122.9 3.2 139 59-201 228-368 (640)
58 PF08101 DUF1708: Domain of un 98.4 4.5E-06 9.7E-11 76.2 11.3 141 60-202 19-170 (420)
59 KOG4724|consensus 97.7 2.5E-05 5.4E-10 73.5 3.1 136 60-200 442-590 (741)
60 KOG1453|consensus 97.4 0.00011 2.4E-09 73.6 4.0 142 59-200 491-669 (918)
61 KOG1449|consensus 97.2 3.5E-05 7.6E-10 71.5 -2.1 192 12-234 193-390 (670)
62 KOG1449|consensus 96.9 0.00026 5.7E-09 65.8 0.2 69 167-235 1-75 (670)
63 KOG4271|consensus 96.2 0.0066 1.4E-07 59.6 4.9 175 57-233 379-594 (1100)
64 cd07278 PX_RICS_like The phosp 96.2 0.0049 1.1E-07 45.5 3.1 36 3-38 79-114 (114)
65 cd07299 PX_TCGAP The phosphoin 96.2 0.0051 1.1E-07 45.2 3.1 36 3-38 78-113 (113)
66 KOG4370|consensus 52.3 35 0.00075 31.6 5.4 37 100-136 115-151 (514)
67 PF01418 HTH_6: Helix-turn-hel 38.1 66 0.0014 21.9 4.1 41 145-191 4-44 (77)
68 COG4835 Uncharacterized protei 34.9 37 0.0008 25.3 2.4 44 70-119 63-106 (124)
69 PRK14101 bifunctional glucokin 28.8 93 0.002 30.3 4.8 64 112-175 302-374 (638)
70 cd08048 TAF11 TATA Binding Pro 27.9 2.2E+02 0.0048 20.1 5.4 56 71-134 12-83 (85)
71 PF02520 DUF148: Domain of unk 27.8 2.1E+02 0.0045 20.9 5.6 44 127-171 65-110 (113)
72 COG2747 FlgM Negative regulato 27.3 1.1E+02 0.0023 22.2 3.7 34 76-118 59-92 (93)
73 smart00096 UTG Uteroglobin. 26.8 1.6E+02 0.0035 20.0 4.3 48 125-175 17-65 (69)
74 PF06025 DUF913: Domain of Unk 26.0 83 0.0018 28.7 3.7 23 153-175 67-89 (379)
75 PF04282 DUF438: Family of unk 25.8 2.2E+02 0.0048 19.4 5.4 50 111-160 1-51 (71)
76 PF01099 Uteroglobin: Uteroglo 25.7 1.9E+02 0.0041 19.2 4.6 53 109-167 5-58 (67)
77 PF11333 DUF3135: Protein of u 25.1 2.5E+02 0.0054 19.7 5.2 49 129-177 6-57 (83)
78 PF03540 TFIID_30kDa: Transcri 22.7 1.2E+02 0.0027 19.3 2.9 31 122-152 1-31 (51)
79 PF03471 CorC_HlyC: Transporte 21.3 1.2E+02 0.0026 20.6 3.0 45 67-121 4-48 (81)
80 KOG1168|consensus 20.6 1.9E+02 0.0042 25.4 4.6 72 8-91 276-350 (385)
No 1
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=8e-46 Score=305.93 Aligned_cols=191 Identities=29% Similarity=0.504 Sum_probs=168.9
Q ss_pred CCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCC-CCCCCCCCccccCHH
Q psy3002 29 CGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDR-IPDLYTDDTIVQDIH 106 (240)
Q Consensus 29 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~-~~~~~~~~~~~~d~~ 106 (240)
|.|+-...+..+.++| ++.+|+. .++++|+++|||||++|+.++++++++.||++. ..++.. ....|+|
T Consensus 2 G~~L~~~~~~~~~~iP~iv~~ci~-------~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~--~~~~d~h 72 (194)
T cd04372 2 GCDLTTLVKAHNTQRPMVVDMCIR-------EIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISA--TVYPDIN 72 (194)
T ss_pred CCChHHHHHHcCCCCChHHHHHHH-------HHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcc--cccccHH
Confidence 4566666677777899 6889997 477889999999999999999999999999854 334322 1235899
Q ss_pred HHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhh
Q psy3002 107 SVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARN 186 (240)
Q Consensus 107 ~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~n 186 (240)
+||++||.|||+||+||+|.+.|+.|+++.+..+.++++..++.++.+||+.|+.+|++|+.||++|+++++.||||+.|
T Consensus 73 ~va~lLK~flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~N 152 (194)
T cd04372 73 VITGALKLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAEN 152 (194)
T ss_pred HHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002 187 VAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF 230 (240)
Q Consensus 187 La~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF 230 (240)
||+||||+|+++++.+ ....+.++..+..++++||+||++||
T Consensus 153 Laivf~P~Ll~~~~~~--~~~~~~~~~~~~~iv~~LI~~~~~iF 194 (194)
T cd04372 153 LGIVFGPTLMRPPEDS--ALTTLNDMRYQILIVQLLITNEDVLF 194 (194)
T ss_pred HHHHHhcccCCCCCcc--HHHHHHhHHHHHHHHHHHHHhhHhhC
Confidence 9999999999998753 34456777888999999999999998
No 2
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.7e-44 Score=298.80 Aligned_cols=199 Identities=27% Similarity=0.363 Sum_probs=171.9
Q ss_pred ccCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCH
Q psy3002 27 INCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDI 105 (240)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~ 105 (240)
.++.|+-+..+.+++..| ++.+|+. .++++|+.+|||||++|+.++++++++.+|.|...... .....|+
T Consensus 4 ~FG~~L~~~~~~~~~~iP~~v~~~i~-------~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~--~~~~~d~ 74 (203)
T cd04386 4 VFGTPLEEHLKRTGREIALPIEACVM-------CLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPL--DEFYSDP 74 (203)
T ss_pred cCCCCHHHHHHHcCCCCCHHHHHHHH-------HHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcch--hhccCCH
Confidence 355677777777777888 5788986 46788999999999999999999999999998643211 1123699
Q ss_pred HHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChh
Q psy3002 106 HSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTAR 185 (240)
Q Consensus 106 ~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~ 185 (240)
|+||++||.|||+||+||+|.+.|+.|+++.+..+.++++..++.++.+||+.|+.+|++|+.||++|+++++.|+||++
T Consensus 75 h~va~~lK~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~ 154 (203)
T cd04386 75 HAVASALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPS 154 (203)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChH
Confidence 99999999999999999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred hHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCCC
Q psy3002 186 NVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKKN 234 (240)
Q Consensus 186 nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~ 234 (240)
|||+||||+|++++..+...+...........++++||+||+.||+++.
T Consensus 155 nLai~faP~ll~~~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~iF~~~~ 203 (203)
T cd04386 155 NIAIVLAPNLLWAKNEGSLAEMAAGTSVHVVAIVELIISHADWFFPGEV 203 (203)
T ss_pred HHHHHhccccCCCCCCChhhhhhhhhhHHHHHHHHHHHHhHHHhCCCCC
Confidence 9999999999999875432333345566789999999999999999863
No 3
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=1.4e-43 Score=291.88 Aligned_cols=189 Identities=23% Similarity=0.310 Sum_probs=169.7
Q ss_pred CCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHH
Q psy3002 30 GPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSV 108 (240)
Q Consensus 30 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~v 108 (240)
|.+.+....+...+| ++.+|+. .++++|+++|||||++|+..+++++++.|+++........ .|+|+|
T Consensus 4 ~~~~~~~~~~~~~IP~~l~~ci~-------~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~----~d~h~v 72 (193)
T cd04382 4 GELADFDPSTSPMIPALIVHCVN-------EIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSK----VDIHVI 72 (193)
T ss_pred ccccccCCCCCCCccHHHHHHHH-------HHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCccccc----CCHHHH
Confidence 445555566777888 7889997 5788999999999999999999999999998865432222 599999
Q ss_pred HHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHH
Q psy3002 109 ASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVA 188 (240)
Q Consensus 109 a~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa 188 (240)
|++||+|||+||+||+|.+.|+.|+++.+..+.++++..++.++..||+.|+.+|++|+.||++|++ ++.||||+.|||
T Consensus 73 aslLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLA 151 (193)
T cd04382 73 CGCLKDFLRSLKEPLITFALWKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLA 151 (193)
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhh
Confidence 9999999999999999999999999999988899999999999999999999999999999999999 999999999999
Q ss_pred HhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002 189 IVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF 230 (240)
Q Consensus 189 ~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF 230 (240)
+||||+||+.+..+.+.+..+.++..+..+|+.||++.+..|
T Consensus 152 ivf~P~L~~~~~~~~~~~~~~~~~~~~~~vve~Li~~~~~~~ 193 (193)
T cd04382 152 RVFGPTIVGYSVPNPDPMTILQDTVRQPRVVERLLEIPSDYW 193 (193)
T ss_pred hhhhchhcCCCCCCccHHHHHHHhHHHHHHHHHHHhCCcccC
Confidence 999999999988766678888999999999999999988765
No 4
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.4e-43 Score=294.55 Aligned_cols=183 Identities=26% Similarity=0.377 Sum_probs=161.8
Q ss_pred ccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhh
Q psy3002 40 NRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRE 118 (240)
Q Consensus 40 ~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~ 118 (240)
.+++| ++.+|+. .++++|+++|||||++|+..+++++++.||+|....+... .|+|+||++||.|||+
T Consensus 6 ~~~iP~iv~~ci~-------~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~----~~~h~va~lLK~fLRe 74 (206)
T cd04376 6 ARQVPRLVESCCQ-------HLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDEN----HSVHDVAALLKEFFRD 74 (206)
T ss_pred CCCCCHHHHHHHH-------HHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCccc----CCHHHHHHHHHHHHHh
Confidence 45677 6888996 4678899999999999999999999999999987765443 7999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCC-----------CCCCChhhH
Q psy3002 119 LPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGD-----------KTGMTARNV 187 (240)
Q Consensus 119 Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~-----------~NkM~~~nL 187 (240)
||+||+|.++|+.|+.+.... .++++..++.++.+||+.||.+|++|+.||++|+++++ .||||++||
T Consensus 75 LPePLi~~~~y~~~i~~~~~~-~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NL 153 (206)
T cd04376 75 MPDPLLPRELYTAFIGTALLE-PDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNL 153 (206)
T ss_pred CCCccCCHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHH
Confidence 999999999999999988754 67889999999999999999999999999999999986 799999999
Q ss_pred HHhhccccccCCccccc----hhhhhhhhhhHHHHHHHHHhcchhcCCCCC
Q psy3002 188 AIVWAPNLLRCKELEYG----GVAALQGVGVQAVVTEFLVVYYAAIFDKKN 234 (240)
Q Consensus 188 a~vfaP~l~~~~~~~~~----~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~ 234 (240)
|+||||+|++++..... ....+.+...+..+|++||+||+.||....
T Consensus 154 Aivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~ 204 (206)
T cd04376 154 ATIFGPNLLHKQKSGEREFVQASLRIEESTAIINVVQTMIDNYEELFMVSP 204 (206)
T ss_pred HHHhhccccCCCCCcccccchhhhhHHHHHHHHHHHHHHHHhHHHHcCCCC
Confidence 99999999999875421 234566777888999999999999998543
No 5
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.8e-43 Score=291.50 Aligned_cols=188 Identities=19% Similarity=0.272 Sum_probs=167.3
Q ss_pred CCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHH
Q psy3002 29 CGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHS 107 (240)
Q Consensus 29 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~ 107 (240)
|.|+-...+ ++++| ++.+|+. .++++|+.+|||||++|+..+++++++.+|+|...++. . .|+|+
T Consensus 3 G~~L~~~~~--~~~vP~~i~~~i~-------~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~-~----~~~~~ 68 (192)
T cd04402 3 GQPLSNICE--DDNLPKPILDMLS-------LLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLK-A----EPVLL 68 (192)
T ss_pred CCcHHHHhC--CCCCCHHHHHHHH-------HHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCc-c----CCHHH
Confidence 344444444 56788 6788997 46678999999999999999999999999999876652 2 69999
Q ss_pred HHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhH
Q psy3002 108 VASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNV 187 (240)
Q Consensus 108 va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nL 187 (240)
||++||+|||+||+||+|.+.|+.|+++.+..+.++++..++.++.+||+.|+.+|++++.||++|+.+++.|+||++||
T Consensus 69 va~~lK~flreLpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nL 148 (192)
T cd04402 69 LASVLKDFLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNL 148 (192)
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHh
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCC
Q psy3002 188 AIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKK 233 (240)
Q Consensus 188 a~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~ 233 (240)
|+||||+|++++..+ .....+......++++||+|+++||+++
T Consensus 149 Ai~faP~l~~~~~~~---~~~~~~~~~~~~~~~~LI~~~~~IF~~~ 191 (192)
T cd04402 149 AVCIAPSLLWPPASS---ELQNEDLKKVTSLVQFLIENCQEIFGED 191 (192)
T ss_pred hhhccccccCCCCcc---HHHHHHHHhhhHHHHHHHHhHHHhCCCC
Confidence 999999999998753 2335566778999999999999999986
No 6
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=2.1e-43 Score=292.68 Aligned_cols=177 Identities=26% Similarity=0.442 Sum_probs=157.7
Q ss_pred cccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhC
Q psy3002 41 RGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFREL 119 (240)
Q Consensus 41 ~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~L 119 (240)
+..| ++.+|+. .++++|+++|||||++|+..+++++++.+|+|...++... .|+|+||++||.|||+|
T Consensus 20 ~~iP~~i~~~i~-------~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~----~d~h~va~lLK~fLReL 88 (199)
T cd04390 20 RLVPILVEQCVD-------FIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSD----TDVHTVASLLKLYLREL 88 (199)
T ss_pred CCCChHHHHHHH-------HHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCcccc----CCHHHHHHHHHHHHHhC
Confidence 3467 5778886 4678899999999999999999999999999987655433 79999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhc--CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhcccccc
Q psy3002 120 PNPLCTYQLYHSFVGAVQQ--SKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197 (240)
Q Consensus 120 p~pLi~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~ 197 (240)
|+||+|.+.|+.|+.+.+. .+.+.++..++.++..||+.|+.+|++|+.||++|+++++.||||+.|||+||||+|+|
T Consensus 89 PePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~llr 168 (199)
T cd04390 89 PEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLATVFGPNILR 168 (199)
T ss_pred CCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhccccCC
Confidence 9999999999999988763 45677889999999999999999999999999999999999999999999999999999
Q ss_pred CCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002 198 CKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF 230 (240)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF 230 (240)
++..+ ....+........++++||+|+++||
T Consensus 169 ~~~~~--~~~~~~~~~~~~~~~~~lI~~~~~~F 199 (199)
T cd04390 169 PKVED--PATIMEGTPQIQQLMTVMISKHEPLF 199 (199)
T ss_pred CCCCC--HHHHHhccHHHHHHHHHHHHhhhhcC
Confidence 98654 44556667777899999999999998
No 7
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.5e-43 Score=288.58 Aligned_cols=185 Identities=29% Similarity=0.452 Sum_probs=162.2
Q ss_pred CCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHH
Q psy3002 29 CGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHS 107 (240)
Q Consensus 29 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~ 107 (240)
|.|+-...+.++...| ++.+|+. .++.+|+++|||||++|+..+++++++.+|.+...++.. ....|+|+
T Consensus 2 Gv~L~~~~~~~~~~iP~~l~~~i~-------~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~--~~~~d~h~ 72 (187)
T cd04403 2 GCHLEALCQRENSTVPKFVRLCIE-------AVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDD--SKWEDIHV 72 (187)
T ss_pred CCChHHHHHHcCCCCChHHHHHHH-------HHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccc--cccccHHH
Confidence 4455566666777888 6889996 467889999999999999999999999999987654432 12379999
Q ss_pred HHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhH
Q psy3002 108 VASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNV 187 (240)
Q Consensus 108 va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nL 187 (240)
||++||.|||+||+||+|.+.|+.|.++.+..+.++++..++.++.+||+.|+.+|++|+.||++|+++++.||||+.||
T Consensus 73 va~lLK~fLReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NL 152 (187)
T cd04403 73 ITGALKLFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNL 152 (187)
T ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHh
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002 188 AIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVY 225 (240)
Q Consensus 188 a~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~ 225 (240)
|+||||+|++++..+ .....++..++.+|++||+|
T Consensus 153 Aivf~P~ll~~~~~~---~~~~~~~~~~~~~ve~l~~~ 187 (187)
T cd04403 153 AIVFGPTLLRPEQET---GNIAVHMVYQNQIVELILLE 187 (187)
T ss_pred hhhccccccCCCCcc---hHHHHHhHHHHHHHHHHhhC
Confidence 999999999998754 22234666899999999986
No 8
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.7e-43 Score=291.92 Aligned_cols=186 Identities=26% Similarity=0.360 Sum_probs=162.9
Q ss_pred CCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHH
Q psy3002 29 CGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHS 107 (240)
Q Consensus 29 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~ 107 (240)
|.|+-...+.+.+++| ++.+|+. .++.+|+++|||||++|+..++++|++.||+|........ .|||+
T Consensus 2 Gv~l~~l~~~~~~~vP~iv~~ci~-------~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~----~~~h~ 70 (200)
T cd04408 2 GVDFSQLPRDFPEEVPFVVVRCTA-------EIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSG----HSPHD 70 (200)
T ss_pred CCCHHHHHHhCCCCCChHHHHHHH-------HHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCccc----CCHHH
Confidence 3455556667788899 7889997 5778999999999999999999999999999875322222 69999
Q ss_pred HHHHHHHHHhhCCCCCCChhhHHHHHHHHhc--C----------CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc
Q psy3002 108 VASLLKMYFRELPNPLCTYQLYHSFVGAVQQ--S----------KLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAA 175 (240)
Q Consensus 108 va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~--~----------~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~ 175 (240)
||++||.|||+||+||+|.++|+.|+++.+. . +.++++.+++.++..||+.||.+|++|+.||++|++
T Consensus 71 va~lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~ 150 (200)
T cd04408 71 ITSVLKHFLKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAE 150 (200)
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987652 1 245789999999999999999999999999999999
Q ss_pred CCCCCCCChhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002 176 HGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVY 225 (240)
Q Consensus 176 ~s~~NkM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~ 225 (240)
+++.||||+.|||+||||+|++++..+...+..+.+++.++.+|++||+|
T Consensus 151 ~~~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~q~~~ve~li~~ 200 (200)
T cd04408 151 RFEDNKMSPNNLGIVFGPTLLRPLVGGDVSMICLLDTGYQAQLVEFLISN 200 (200)
T ss_pred hhhccCCCHhHhhhhhccccCCCCCCCchHHHHHhccchHHHHHHHHhhC
Confidence 99999999999999999999999976555677778899999999999986
No 9
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4e-43 Score=294.65 Aligned_cols=194 Identities=22% Similarity=0.261 Sum_probs=168.7
Q ss_pred ccCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCH
Q psy3002 27 INCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDI 105 (240)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~ 105 (240)
.++.|+....+.+..+.| ++.+|+. .++.+|+++|||||++|+..++++|++.+|.+........ .++
T Consensus 4 vFGvpL~~~~~r~g~~IP~~i~~~i~-------~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~----~~~ 72 (220)
T cd04375 4 VFGVPLLVNLQRTGQPLPRSIQQAMR-------WLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDG----QQA 72 (220)
T ss_pred EecCcHHHHHhhcCCCCChHHHHHHH-------HHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCccc----ccH
Confidence 356677667777777888 6788986 4678899999999999999999999999998754332222 689
Q ss_pred HHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChh
Q psy3002 106 HSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTAR 185 (240)
Q Consensus 106 ~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~ 185 (240)
|+||++||.|||+||+||+|.++|+.|+++.+..+.++++++++.++..||++||.+|++|+.||++|+.|++.||||++
T Consensus 73 ~~va~lLK~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 152 (220)
T cd04375 73 YDVADMLKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTAT 152 (220)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHH
Confidence 99999999999999999999999999999988778889999999999999999999999999999999999999999999
Q ss_pred hHHHhhccccccCCcccc-----------------chhhhhhhhhhHHHHHHHHHhcchhcCC
Q psy3002 186 NVAIVWAPNLLRCKELEY-----------------GGVAALQGVGVQAVVTEFLVVYYAAIFD 231 (240)
Q Consensus 186 nLa~vfaP~l~~~~~~~~-----------------~~~~~~~~~~~~~~vv~~LI~~~~~iF~ 231 (240)
|||+||||+||+...... .....+.+...+..+|.+||+||+.||.
T Consensus 153 NLAivfaP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~v~~lI~~~~~lf~ 215 (220)
T cd04375 153 NLAVCLAPSLFHLNTSRRENSSPARRMQRKKSLGKPDQKELSENKAAHQCLAYMIEECNTLFM 215 (220)
T ss_pred HHHHHHhhhhcCCCCCCcccccchhhhccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999865321 1234566777789999999999999995
No 10
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.3e-43 Score=290.28 Aligned_cols=189 Identities=43% Similarity=0.677 Sum_probs=165.6
Q ss_pred cCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHH
Q psy3002 28 NCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIH 106 (240)
Q Consensus 28 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~ 106 (240)
++.|+-+..+.+..++| ++.+|+. .++.+|+ .|||||++|+..+++++++.+|++...++... ....|+|
T Consensus 3 FG~~L~~~~~~~g~~iP~il~~~i~-------~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~-~~~~d~h 73 (195)
T cd04384 3 FGCDLTEHLLNSGQDVPQVLKSCTE-------FIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKD-VYIQDIH 73 (195)
T ss_pred CCccHHHHHHHcCCCCChHHHHHHH-------HHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccc-cccccHH
Confidence 34455556566778889 6889997 4678888 59999999999999999999999987665322 2346999
Q ss_pred HHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhh
Q psy3002 107 SVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARN 186 (240)
Q Consensus 107 ~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~n 186 (240)
+||++||.|||+||+||+|.+.|+.|+++.+..+.++++..++.++.+||+.|+.+|++|+.||++|+++++.||||++|
T Consensus 74 ~va~lLK~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 153 (195)
T cd04384 74 SVSSLCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKN 153 (195)
T ss_pred HHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccCCccccc---hhhhhhhhhhHHHHHHHHHhc
Q psy3002 187 VAIVWAPNLLRCKELEYG---GVAALQGVGVQAVVTEFLVVY 225 (240)
Q Consensus 187 La~vfaP~l~~~~~~~~~---~~~~~~~~~~~~~vv~~LI~~ 225 (240)
||+||||+|+++++.... +.....+++.+..|+++||+|
T Consensus 154 LAivf~P~L~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~~ 195 (195)
T cd04384 154 LAIVWAPNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNH 195 (195)
T ss_pred hhHhhhhhcCCCCccccccchHHHHHHHHhhhhhheehhhcC
Confidence 999999999999864322 356678888999999999987
No 11
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.2e-43 Score=291.16 Aligned_cols=182 Identities=20% Similarity=0.249 Sum_probs=156.5
Q ss_pred ccccccccccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHh
Q psy3002 38 LDNRGRRLLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFR 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr 117 (240)
++..|...+.+|+. .+++ |+++|||||++|+.+++++|++.+|+|...++... ..|+|+||++||.|||
T Consensus 5 ~~~~~~~~v~~~i~-------~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~---~~~~h~va~lLK~flR 73 (208)
T cd04392 5 LTEEGIAQIYQLIE-------YLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESG---GFHAHDCATVLKGFLG 73 (208)
T ss_pred ccccccHHHHHHHH-------HHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccc---cCCHHHHHHHHHHHHH
Confidence 45667777778886 3555 89999999999999999999999999987665422 2689999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHh------------cCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChh
Q psy3002 118 ELPNPLCTYQLYHSFVGAVQ------------QSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTAR 185 (240)
Q Consensus 118 ~Lp~pLi~~~~~~~~~~~~~------------~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~ 185 (240)
+||+||+|.+.|+.|.++.+ ..+.++++..++.++..||+.||.+|++|+.||++|+++++.||||+.
T Consensus 74 eLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 153 (208)
T cd04392 74 ELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSAD 153 (208)
T ss_pred hCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccCCCCHH
Confidence 99999999999999987664 234567789999999999999999999999999999999999999999
Q ss_pred hHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCC
Q psy3002 186 NVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDK 232 (240)
Q Consensus 186 nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~ 232 (240)
|||+||||+|++++..+ ......+....+.+|++||+||+.||+.
T Consensus 154 NLAivf~P~Ll~~~~~~--~~~~~~~~~~~~~iv~~lI~~~~~iF~~ 198 (208)
T cd04392 154 NLALLFTPHLICPRNLT--PEDLHENAQKLNSIVTFMIKHSQKLFKA 198 (208)
T ss_pred HHHHHhCcccCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999987643 2222345567889999999999999974
No 12
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=9.1e-43 Score=285.63 Aligned_cols=181 Identities=28% Similarity=0.385 Sum_probs=159.9
Q ss_pred chhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHH
Q psy3002 33 LSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASL 111 (240)
Q Consensus 33 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~l 111 (240)
++.+..++.++| ++.+|+. .++.+|+.+|||||++|+..+++++++.+|.+....... ..|+|+||++
T Consensus 5 L~~~~~~~~~vP~il~~~i~-------~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~----~~d~h~va~l 73 (186)
T cd04407 5 VGSLTSNKTSVPIVLEKLLE-------HVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLE----NYPIHAITGL 73 (186)
T ss_pred HHHHHhCCCCCCcHHHHHHH-------HHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcc----cCCHHHHHHH
Confidence 444455778888 7889997 467889999999999999999999999999875432122 2699999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhh
Q psy3002 112 LKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVW 191 (240)
Q Consensus 112 LK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vf 191 (240)
||.|||+||+||+|.+.|++|+.+.+..+..+++..++.++..||+.|+.+|++|+.||++|+++++.||||++|||+||
T Consensus 74 LK~flReLPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf 153 (186)
T cd04407 74 LKQWLRELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVF 153 (186)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhh
Confidence 99999999999999999999999988888889999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002 192 APNLLRCKELEYGGVAALQGVGVQAVVTEFLVVY 225 (240)
Q Consensus 192 aP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~ 225 (240)
||+|+|+++.+ +....+.++.++..+|++||+.
T Consensus 154 aP~Ll~~~~~~-d~~~~~~~~~~~~~~v~~li~~ 186 (186)
T cd04407 154 APCLLRCPDSS-DPLTSMKDVAKTTTCVEMLIKE 186 (186)
T ss_pred hccccCCCCCC-CHHHHHHhhhhhHHHHHHHhhC
Confidence 99999987543 2566788999999999999973
No 13
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.2e-42 Score=287.41 Aligned_cols=182 Identities=27% Similarity=0.433 Sum_probs=161.8
Q ss_pred cccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHh
Q psy3002 39 DNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFR 117 (240)
Q Consensus 39 ~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr 117 (240)
+++++| ++.+|+. .++.+|+++|||||++|+..++++|++.+|++... ....+....|+|+||++||+|||
T Consensus 14 ~~~~vP~iv~~~~~-------~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~-~~~~~~~~~d~~~va~llK~flr 85 (196)
T cd04395 14 ENPYVPLIVEVCCN-------IVEARGLETVGIYRVPGNNAAISALQEELNRGGFD-IDLQDPRWRDVNVVSSLLKSFFR 85 (196)
T ss_pred CCCCCChHHHHHHH-------HHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCC-cCccccccccHHHHHHHHHHHHH
Confidence 346788 6788986 57788999999999999999999999999998753 21222334799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhcccccc
Q psy3002 118 ELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197 (240)
Q Consensus 118 ~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~ 197 (240)
+||+||+|.+.|+.|+++.+.++.++++..+++++.+||+.|+.+|++|+.||++|+.+++.|+|+++|||+||||+|+|
T Consensus 86 ~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~faP~l~r 165 (196)
T cd04395 86 KLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVFGPTLVR 165 (196)
T ss_pred hCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhhccccCC
Confidence 99999999999999999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002 198 CKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF 230 (240)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF 230 (240)
+++.+ ......++..+..+++.||+|||++|
T Consensus 166 ~~~~~--~~~~~~~~~~~~~ii~~LI~~~d~~f 196 (196)
T cd04395 166 TSDDN--METMVTHMPDQCKIVETLIQHYDWFF 196 (196)
T ss_pred CCCCC--HHHHHHhHHHHHHHHHHHHHhCcccC
Confidence 98754 33445677888999999999999998
No 14
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.5e-42 Score=282.80 Aligned_cols=183 Identities=26% Similarity=0.413 Sum_probs=164.2
Q ss_pred CCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHH
Q psy3002 29 CGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHS 107 (240)
Q Consensus 29 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~ 107 (240)
+|+.++.+++.+.++| ++.+|+. .++.+|+++|||||++|+..++++|++.|+.+...... .....|||+
T Consensus 1 ~~~~l~~~~~~~~~iP~~v~~~i~-------~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~--~~~~~d~~~ 71 (184)
T cd04385 1 DGPALEDQQLTDNDIPVIVDKCID-------FITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQL--REGEYTVHD 71 (184)
T ss_pred CCccHHHhhhCCCCCChHHHHHHH-------HHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCC--CcccCCHHH
Confidence 5889999999999999 7889996 46778999999999999999999999999886432111 122379999
Q ss_pred HHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhH
Q psy3002 108 VASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNV 187 (240)
Q Consensus 108 va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nL 187 (240)
||++||.|||+||+||||.+.|++|+.+.+..+.++++..++.++.+||+.|+.+|++++.||++|+++++.|||++.||
T Consensus 72 va~llK~yLreLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nL 151 (184)
T cd04385 72 VADVLKRFLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNL 151 (184)
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHh
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcc
Q psy3002 188 AIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYY 226 (240)
Q Consensus 188 a~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~ 226 (240)
|+||||+|+++++. ...+.....++++.||+||
T Consensus 152 aiv~~P~ll~~~~~------~~~~~~~~~~v~~~Li~~~ 184 (184)
T cd04385 152 ALVFGPTLFQTDEH------SVGQTSHEVKVIEDLIDNY 184 (184)
T ss_pred hhhhccccCCCCcc------chhHHHHHHHHHHHHHhcC
Confidence 99999999999864 2345667899999999998
No 15
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=1.6e-42 Score=283.51 Aligned_cols=163 Identities=23% Similarity=0.326 Sum_probs=150.5
Q ss_pred cccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhC
Q psy3002 41 RGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFREL 119 (240)
Q Consensus 41 ~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~L 119 (240)
...| ++.+|+. .++.+|+++|||||++|+..+++++++.+|++...++.. .|+|+||++||.|||+|
T Consensus 18 ~~iP~~v~~~i~-------~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~-----~d~h~va~lLK~fLReL 85 (182)
T cd04381 18 IDLPLVFRECID-------YVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEE-----YEPPTVASLLKQYLREL 85 (182)
T ss_pred CcCChHHHHHHH-------HHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccc-----cChHHHHHHHHHHHHhC
Confidence 4567 6788986 477889999999999999999999999999998766532 69999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCC
Q psy3002 120 PNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCK 199 (240)
Q Consensus 120 p~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~ 199 (240)
|+||+|.++|+.|.++.+..+.++++..++.++.+||+.|+.+|++|+.||++|+++++.||||++|||+||||+|+.+
T Consensus 86 P~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~l~~~- 164 (182)
T cd04381 86 PEPLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSPTVQIS- 164 (182)
T ss_pred CCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCccccCc-
Confidence 9999999999999999988888999999999999999999999999999999999999999999999999999999854
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHhcchhcCCC
Q psy3002 200 ELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDK 232 (240)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~ 232 (240)
..+++.||+||+.||++
T Consensus 165 ----------------~~~~~~li~~~~~if~~ 181 (182)
T cd04381 165 ----------------NRLLYALLTHCQELFGN 181 (182)
T ss_pred ----------------HHHHHHHHHHHHHHcCC
Confidence 45899999999999986
No 16
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.4e-42 Score=288.70 Aligned_cols=195 Identities=24% Similarity=0.269 Sum_probs=163.4
Q ss_pred CCCcchhhhcc-----ccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccc
Q psy3002 29 CGPVLSWMELD-----NRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIV 102 (240)
Q Consensus 29 ~~~~~~~~~~~-----~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~ 102 (240)
|.|+-...+.+ ...+| ++.+|+. .++++|+.+|||||++|+.++++++++.+|++...+.. +...
T Consensus 3 Gv~L~~l~~~~~~~~~~~~iP~~l~~~i~-------~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~--~~~~ 73 (216)
T cd04391 3 GVPLSTLLERDQKKVPGSKVPLIFQKLIN-------KLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTF--LWDQ 73 (216)
T ss_pred CCCHHHHHHHhcccCCCCCCCcHHHHHHH-------HHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCcc--cccc
Confidence 34444444443 34677 6778886 46678999999999999999999999999987433211 1123
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCC
Q psy3002 103 QDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGM 182 (240)
Q Consensus 103 ~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM 182 (240)
.|+|+||++||+|||+||+||+|.+.|+.|.++.+..+.++++.+++.++..||+.|+.+|++|+.||++|++|++.|||
T Consensus 74 ~~~h~va~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 153 (216)
T cd04391 74 VKQHDAASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKM 153 (216)
T ss_pred CCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCC
Confidence 69999999999999999999999999999999888888889999999999999999999999999999999999999999
Q ss_pred ChhhHHHhhccccccCCccccc----hhhhhhhhhhHHHHHHHHHhcchhcCCC
Q psy3002 183 TARNVAIVWAPNLLRCKELEYG----GVAALQGVGVQAVVTEFLVVYYAAIFDK 232 (240)
Q Consensus 183 ~~~nLa~vfaP~l~~~~~~~~~----~~~~~~~~~~~~~vv~~LI~~~~~iF~~ 232 (240)
|+.|||+||||+||++...... ....+.+....+.++++||+|++.||..
T Consensus 154 ~~~NLAivfaP~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~if~~ 207 (216)
T cd04391 154 NLWNVAMIMAPNLFPPRGKHSKDNESLQEEVNMAAGCANIMRLLIRYQDLLWTV 207 (216)
T ss_pred ChHHHHHHhccccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 9999999999999998764331 2344556677789999999999999973
No 17
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.8e-42 Score=284.48 Aligned_cols=189 Identities=28% Similarity=0.413 Sum_probs=164.0
Q ss_pred CCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCC-CCCCCCccccCHH
Q psy3002 29 CGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIP-DLYTDDTIVQDIH 106 (240)
Q Consensus 29 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~-~~~~~~~~~~d~~ 106 (240)
+.|+-...+.+..+.| ++.+|+. .++.+|+++|||||++|+..+++++++.+|++... +....+....|+|
T Consensus 2 G~~L~~~~~~~~~~iP~~v~~~i~-------~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~ 74 (192)
T cd04398 2 GVPLEDLILREGDNVPNIVYQCIQ-------AIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIH 74 (192)
T ss_pred CCChHHHHHHcCCCCCHHHHHHHH-------HHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHH
Confidence 3455555566677888 7789986 46678999999999999999999999999988632 2211112236999
Q ss_pred HHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhh
Q psy3002 107 SVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARN 186 (240)
Q Consensus 107 ~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~n 186 (240)
+||++||+|||+||+||+|.+.|+.|+++.+..+..++...++.++.+||+.|+.+|++|+.||++|+.+++.|+||+.|
T Consensus 75 ~va~~LK~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~n 154 (192)
T cd04398 75 SVASLLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNN 154 (192)
T ss_pred HHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002 187 VAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF 230 (240)
Q Consensus 187 La~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF 230 (240)
||+||||+|++++.. ...+++.+..++++||+||++||
T Consensus 155 Laivf~P~l~~~~~~------~~~~~~~~~~~~~~LI~~~~~iF 192 (192)
T cd04398 155 LAIIWGPTLMNAAPD------NAADMSFQSRVIETLLDNAYQIF 192 (192)
T ss_pred HHHHHhhhhCCCCcc------chhhHHHHHHHHHHHHHHHHHhC
Confidence 999999999999864 23566778899999999999998
No 18
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=1.3e-42 Score=285.17 Aligned_cols=185 Identities=21% Similarity=0.350 Sum_probs=160.3
Q ss_pred cCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHH
Q psy3002 28 NCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIH 106 (240)
Q Consensus 28 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~ 106 (240)
+|.|+-+..+.+...+| ++.+|+. .++++|+++|||||++|+.++++++++.||+|.+.... +....|+|
T Consensus 3 FG~~L~~~~~~~~~~IP~~v~~~i~-------~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~--~~~~~d~~ 73 (188)
T cd04383 3 FNGSLEEYIQDSGQAIPLVVESCIR-------FINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLAD--DQNDHDIN 73 (188)
T ss_pred CCccHHHHHHHCCCCCChHHHHHHH-------HHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCcccc--ccccccHH
Confidence 45666666777778899 6889997 46788999999999999999999999999998754321 12237999
Q ss_pred HHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhh
Q psy3002 107 SVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARN 186 (240)
Q Consensus 107 ~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~n 186 (240)
+||++||.|||+||+||+|.+.|+.|+++.+..+..+++..++.++.+||+.|+.+|++|+.||++|+++++.||||++|
T Consensus 74 ~va~lLK~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 153 (188)
T cd04383 74 SVAGVLKLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYN 153 (188)
T ss_pred HHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCccc
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002 187 VAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVY 225 (240)
Q Consensus 187 La~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~ 225 (240)
||+||||+|++.++.. ..+......+++++.||.|
T Consensus 154 LAivf~P~L~~~p~~~----~~~~~~~~~~~~~~~li~~ 188 (188)
T cd04383 154 LAICFGPTLMPVPEGQ----DQVSCQAHVNELIKTIIIH 188 (188)
T ss_pred ceeeeeccccCCCCCc----cHHHHHHHHHHHHHHHhcC
Confidence 9999999999987643 1233345678888888865
No 19
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=3.8e-42 Score=281.95 Aligned_cols=179 Identities=28% Similarity=0.434 Sum_probs=157.6
Q ss_pred hhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHH
Q psy3002 34 SWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLL 112 (240)
Q Consensus 34 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lL 112 (240)
+......++.| ++.+|+. .++.+|+.+|||||++|+..+++++++.+|.+........ .|+|+||++|
T Consensus 6 ~~l~~~~~~iP~ii~~~i~-------~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~----~d~h~va~lL 74 (186)
T cd04406 6 SRLTSEDRSVPLVVEKLIN-------YIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDD----YNIHVIASVF 74 (186)
T ss_pred HHHHHCCCCCCcHHHHHHH-------HHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCccc----CCHHHHHHHH
Confidence 33334456788 6788986 4678899999999999999999999999998754322222 7999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhc
Q psy3002 113 KMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWA 192 (240)
Q Consensus 113 K~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfa 192 (240)
|.|||+||+||+|.++|++|.++.+..+..+++..++.++.+||+.|+.+|++++.||++|+++++.||||++|||+|||
T Consensus 75 K~fLReLPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~ 154 (186)
T cd04406 75 KQWLRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFA 154 (186)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhc
Confidence 99999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccccchhhhhhhhhhHHHHHHHHHh
Q psy3002 193 PNLLRCKELEYGGVAALQGVGVQAVVTEFLVV 224 (240)
Q Consensus 193 P~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~ 224 (240)
|+|+++++.. +....+.++..+..+|++||.
T Consensus 155 P~ll~~p~~~-d~~~~~~~~~~~~~~~~~~~~ 185 (186)
T cd04406 155 PCILRCPDTT-DPLQSVQDISKTTTCVELIVC 185 (186)
T ss_pred ccccCCCCCC-CHHHHHHHHhhccchhhhhcc
Confidence 9999987643 356678999999999999985
No 20
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.6e-42 Score=285.32 Aligned_cols=178 Identities=31% Similarity=0.459 Sum_probs=157.9
Q ss_pred hhhccccccccccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHH-hcCCC----CCCCCCCCccccCHHHHH
Q psy3002 35 WMELDNRGRRLLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHT-FDEDR----IPDLYTDDTIVQDIHSVA 109 (240)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~-~d~~~----~~~~~~~~~~~~d~~~va 109 (240)
.+.++..+.+++.+|+. .++.+|+++|||||++|+..+++++++. +|.+. ..++.. ...|+|+||
T Consensus 21 ~~~l~~~~~~iv~~ci~-------~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~---~~~d~h~va 90 (203)
T cd04374 21 EAQLDDIGFKFVRKCIE-------AVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDN---SEWEIKTIT 90 (203)
T ss_pred ccccccccHHHHHHHHH-------HHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCcccccccc---ccccHHHHH
Confidence 46688899999999997 5778899999999999999999999875 66541 222221 137999999
Q ss_pred HHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHH
Q psy3002 110 SLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAI 189 (240)
Q Consensus 110 ~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~ 189 (240)
++||+|||+||+||||.++|+.|+.+.+..+.++++..++.++..||+.|+.+|++|+.||++|+++++.||||+.|||+
T Consensus 91 ~lLK~fLReLPePLi~~~~y~~~i~~~~~~~~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 170 (203)
T cd04374 91 SALKTYLRNLPEPLMTYELHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGV 170 (203)
T ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHH
Confidence 99999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred hhccccccCCccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002 190 VWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVY 225 (240)
Q Consensus 190 vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~ 225 (240)
||||+|++++.. ....+.+++.++.++++||+|
T Consensus 171 vf~P~Llr~~~~---~~~~~~~~~~~~~vve~LIeN 203 (203)
T cd04374 171 VFGPTLLRPQEE---TVAAIMDIKFQNIVVEILIEN 203 (203)
T ss_pred HhccccCCCCCc---cHHHHHHhHHHHHHhhhHhcC
Confidence 999999999864 334566788899999999987
No 21
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=5.1e-42 Score=285.10 Aligned_cols=186 Identities=25% Similarity=0.400 Sum_probs=159.8
Q ss_pred CCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHH
Q psy3002 29 CGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHS 107 (240)
Q Consensus 29 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~ 107 (240)
|.|+-...+.+++++| ++.+|+. .++.+|+++|||||++|+..+++++++.||.+........ .|+|+
T Consensus 2 G~~L~~~~~~~~~~vP~iv~~ci~-------~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~----~~~h~ 70 (203)
T cd04378 2 GVDFSQVPRDFPDEVPFIIKKCTS-------EIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSE----LSPHD 70 (203)
T ss_pred CCChHHHHHHCCCCCChHHHHHHH-------HHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCcccccc----CCHHH
Confidence 3455555566778899 7889997 5788999999999999999999999999998864322222 69999
Q ss_pred HHHHHHHHHhhCCCCCCChhhHHHHHHHHhcC--------------CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Q psy3002 108 VASLLKMYFRELPNPLCTYQLYHSFVGAVQQS--------------KLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRV 173 (240)
Q Consensus 108 va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V 173 (240)
||++||+|||+||+||+|.+.|+.|+++.+.. +...++..++.++..||+.|+.+|++|+.||++|
T Consensus 71 va~~LK~fLReLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V 150 (203)
T cd04378 71 ISSVLKLFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRV 150 (203)
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887521 2346788999999999999999999999999999
Q ss_pred hcCCCCCCCChhhHHHhhccccccCCcccc-chhhhhhhhhhHHHHHHHHHhc
Q psy3002 174 AAHGDKTGMTARNVAIVWAPNLLRCKELEY-GGVAALQGVGVQAVVTEFLVVY 225 (240)
Q Consensus 174 ~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~-~~~~~~~~~~~~~~vv~~LI~~ 225 (240)
+++++.|||++.|||+||||+|++++..+. ..+.++.+.+.++.+|++||+|
T Consensus 151 ~~~s~~NkM~~~NLaivf~P~Ll~~~~~~~~~~~~~l~~~~~q~~~ve~li~~ 203 (203)
T cd04378 151 AEQFEENKMSPNNLGIVFGPTLIRPRPGDADVSLSSLVDYGYQARLVEFLITN 203 (203)
T ss_pred HHHHHhhCCCHHHhhhhhccccCCCCCCCcchhHHHHHhhhhhHHHHHHHhhC
Confidence 999999999999999999999999997632 2345577889999999999986
No 22
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.3e-42 Score=285.16 Aligned_cols=186 Identities=25% Similarity=0.462 Sum_probs=157.8
Q ss_pred CCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHH
Q psy3002 29 CGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHS 107 (240)
Q Consensus 29 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~ 107 (240)
|.|+-...+.+.+++| ++.+|+. .++.+|+.+|||||++|+..+++++++.||+|........ .|+|+
T Consensus 2 G~~L~~~~~~~~~~iP~il~~ci~-------~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~----~~~h~ 70 (211)
T cd04409 2 GADFAQVAKKSPDGIPFIIKKCTS-------EIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSE----LSPHD 70 (211)
T ss_pred CCChHHHHHhCCCCCCcHHHHHHH-------HHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCcccccc----CCHHH
Confidence 4455566667778899 6889997 5788999999999999999999999999999864322222 69999
Q ss_pred HHHHHHHHHhhCCCCCCChhhHHHHHHHHhcC---C-------------------HHHHHHHHHHHHhcCCccHHHHHHH
Q psy3002 108 VASLLKMYFRELPNPLCTYQLYHSFVGAVQQS---K-------------------LQDQLTQMRETVEKLPPPHYRTLEY 165 (240)
Q Consensus 108 va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~---~-------------------~~~~~~~l~~~l~~Lp~~n~~~L~~ 165 (240)
||++||.|||+||+||+|.++|++|+++.+.. + ...++.+++.++.+||++||.+|++
T Consensus 71 va~~LK~fLReLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~ 150 (211)
T cd04409 71 ISNVLKLYLRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQF 150 (211)
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 99999999999999999999999999876421 0 0234678999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCChhhHHHhhccccccCCccccc-hhhhhhhhhhHHHHHHHHHhc
Q psy3002 166 LIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYG-GVAALQGVGVQAVVTEFLVVY 225 (240)
Q Consensus 166 l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~-~~~~~~~~~~~~~vv~~LI~~ 225 (240)
|+.||++|+++++.||||+.|||+||||+|+++...+.. .+.++.++..++.+|++||++
T Consensus 151 L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llrp~~~~~~~~~~~~~~~~~~~~~ve~li~~ 211 (211)
T cd04409 151 LIVHLHRVSEQAEENKMSASNLGIIFGPTLIRPRPTDATVSLSSLVDYPHQARLVELLITY 211 (211)
T ss_pred HHHHHHHHHcccccCCCChHHhhhhccccccCCCCCCcchhHHHHhhhhhHHHHHHHHhhC
Confidence 999999999999999999999999999999999865422 345677889999999999975
No 23
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.2e-42 Score=286.10 Aligned_cols=177 Identities=19% Similarity=0.215 Sum_probs=154.2
Q ss_pred ccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCC
Q psy3002 42 GRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELP 120 (240)
Q Consensus 42 ~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp 120 (240)
.+| ++.+|+. .++++|+++|||||++|+..+++++++.+|.+...... ....++|+||++||.|||+||
T Consensus 26 ~IP~~l~~~i~-------~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d---~~~~~~~~va~lLK~flReLP 95 (213)
T cd04397 26 RIPALIDDIIS-------AMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPD---LSKENPVQLAALLKKFLRELP 95 (213)
T ss_pred CCCHHHHHHHH-------HHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccc---cccCcHHHHHHHHHHHHHhCC
Confidence 577 6788986 46778999999999999999999999999998643211 112689999999999999999
Q ss_pred CCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCC-----CCCCChhhHHHhhcccc
Q psy3002 121 NPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGD-----KTGMTARNVAIVWAPNL 195 (240)
Q Consensus 121 ~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~-----~NkM~~~nLa~vfaP~l 195 (240)
+||+|.++|+.|+++.+..+.+++...++.++..||+.||.+|++|+.||++|+.+++ .||||++|||+||||+|
T Consensus 96 epLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~NkM~~~NLAivf~P~L 175 (213)
T cd04397 96 DPLLTFKLYRLWISSQKIEDEEERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDIHNLATVITPNI 175 (213)
T ss_pred CccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCCCcCChHHhHHhhcccc
Confidence 9999999999999999888889999999999999999999999999999999998764 59999999999999999
Q ss_pred ccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCC
Q psy3002 196 LRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFD 231 (240)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~ 231 (240)
++++..+. ....+......+|++||+||+.||.
T Consensus 176 l~~~~~~~---~~~~~~~~~~~vv~~LI~n~~~if~ 208 (213)
T cd04397 176 LYSKTDNP---NTGDEYFLAIEAVNYLIENNEEFCE 208 (213)
T ss_pred cCCCCCCc---chHHHHHHHHHHHHHHHHhHHHHhc
Confidence 99987542 2233445678999999999999996
No 24
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.7e-41 Score=280.45 Aligned_cols=174 Identities=27% Similarity=0.458 Sum_probs=156.1
Q ss_pred cccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhC
Q psy3002 41 RGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFREL 119 (240)
Q Consensus 41 ~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~L 119 (240)
.+.| ++.+|+. .++++|+++|||||++|+..+++++++.+|+|...++... .|+|+||++||.|||+|
T Consensus 21 ~~iP~il~~~i~-------~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~----~d~~~va~~LK~~lr~L 89 (195)
T cd04404 21 EPIPPVVRETVE-------YLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQY----EDVHLPAVILKTFLREL 89 (195)
T ss_pred CCCChHHHHHHH-------HHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccc----cCHHHHHHHHHHHHHhC
Confidence 5777 6788886 4667899999999999999999999999999876554322 59999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCC
Q psy3002 120 PNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCK 199 (240)
Q Consensus 120 p~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~ 199 (240)
|+||+|.+.|+.+.++.+. +.+++...++.++.+||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|+|++
T Consensus 90 p~pLi~~~~~~~l~~~~~~-~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vfaP~l~~~~ 168 (195)
T cd04404 90 PEPLLTFDLYDDIVGFLNV-DKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFGPNLLWAK 168 (195)
T ss_pred CCccCCHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheeeeccccCCC
Confidence 9999999999999988764 367889999999999999999999999999999999999999999999999999999998
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002 200 ELEYGGVAALQGVGVQAVVTEFLVVYYAAIF 230 (240)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF 230 (240)
+.. ..++++...+.++++||+||++||
T Consensus 169 ~~~----~~l~~~~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 169 DAS----MSLSAINPINTFTKFLLDHQDEIF 195 (195)
T ss_pred Ccc----cCHHHHHHHHHHHHHHHHhHHhhC
Confidence 742 346678888999999999999998
No 25
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.5e-41 Score=280.65 Aligned_cols=183 Identities=22% Similarity=0.234 Sum_probs=156.8
Q ss_pred cccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHh
Q psy3002 39 DNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFR 117 (240)
Q Consensus 39 ~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr 117 (240)
++.++| ++.+|+.. +++ |+++|||||++|+..+++++++.+|+|.... .. .++|+||++||.|||
T Consensus 16 ~~~~IP~il~~~~~~-------l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~--~~----~~~~~vaslLK~flR 81 (202)
T cd04394 16 EYGNVPKFLVDACTF-------LLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL--SS----ALPCDVAGLLKQFFR 81 (202)
T ss_pred CCCCCChHHHHHHHH-------HHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc--cc----cCHHHHHHHHHHHHh
Confidence 456788 57788852 333 6999999999999999999999999987532 22 589999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhcccccc
Q psy3002 118 ELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197 (240)
Q Consensus 118 ~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~ 197 (240)
+||+||+|.+.|+.|.++....+.+++..+++.++.+||+.|+.+|++|+.||++|++|++.||||+.|||+||||+|++
T Consensus 82 eLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP~L~~ 161 (202)
T cd04394 82 ELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPNLFQ 161 (202)
T ss_pred cCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcceeec
Confidence 99999999999999999988888888899999999999999999999999999999999999999999999999999999
Q ss_pred CCcccc-chhhhhhhhhhHHHHHHHHHhcchhcCCCCCCCC
Q psy3002 198 CKELEY-GGVAALQGVGVQAVVTEFLVVYYAAIFDKKNPRA 237 (240)
Q Consensus 198 ~~~~~~-~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~~~~ 237 (240)
+.+... .......++..++.+|++||+|++.||. .|.+
T Consensus 162 ~~~~~~~~s~~~~~~~~~~~~vv~~lI~~~~~i~~--vp~~ 200 (202)
T cd04394 162 SEEGGEKMSSSTEKRLRLQAAVVQTLIDNASNIGI--VPDF 200 (202)
T ss_pred CCCcccccchhHHHhHHHHHHHHHHHHHHHHHHcc--CCcc
Confidence 876421 1112234567789999999999999994 5544
No 26
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.3e-41 Score=285.05 Aligned_cols=181 Identities=22% Similarity=0.306 Sum_probs=153.0
Q ss_pred ccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHH
Q psy3002 38 LDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYF 116 (240)
Q Consensus 38 ~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~fl 116 (240)
....++| ++.+|+. .++++|+++|||||++|+..++++|++.||++.+.... .+....++|+||++||+||
T Consensus 27 ~~~~~IP~iv~~ci~-------~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~-~~~~~~~vh~va~lLK~fL 98 (225)
T cd04396 27 YVYGYIPVVVAKCGV-------YLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKS-FDWDGYTVHDAASVLRRYL 98 (225)
T ss_pred ccCCCCChHHHHHHH-------HHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCc-CCccCCCHHHHHHHHHHHH
Confidence 3445678 6789986 46788999999999999999999999999987532111 1112369999999999999
Q ss_pred hhCCCCCCChhhHHHHHHHHhc-----------------CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCC
Q psy3002 117 RELPNPLCTYQLYHSFVGAVQQ-----------------SKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDK 179 (240)
Q Consensus 117 r~Lp~pLi~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~ 179 (240)
|+||+||+|.++|++|.++... .+.++++..++.++.+||+.|+.+|++|+.||++|+++++.
T Consensus 99 ReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~ 178 (225)
T cd04396 99 NNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLLDLLAVFARNSDK 178 (225)
T ss_pred HhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999887642 45678899999999999999999999999999999999999
Q ss_pred CCCChhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002 180 TGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF 230 (240)
Q Consensus 180 NkM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF 230 (240)
||||++|||+||||+|+++++.... ..+...++.+|++||+|++++.
T Consensus 179 NkM~~~NLAivfaP~Ll~~~~~~~~----~~~~~~~~~~ve~lI~~~~~~~ 225 (225)
T cd04396 179 NLMTASNLAAIFQPGILSHPDHEMD----PKEYKLSRLVVEFLIEHQDKFL 225 (225)
T ss_pred ccCChhhhheeeccccCCCCccccC----HHHHHHHHHHHHHHHHhHHhhC
Confidence 9999999999999999998764321 2345667899999999999863
No 27
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=5.7e-41 Score=276.94 Aligned_cols=165 Identities=27% Similarity=0.376 Sum_probs=147.8
Q ss_pred CCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHH
Q psy3002 29 CGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHS 107 (240)
Q Consensus 29 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~ 107 (240)
|.|+....+.++.++| ++.+|+. .++.+|+++|||||++|+..+++++++.+|++....... ....|+|+
T Consensus 2 Gv~L~~~~~r~~~~IP~iv~~ci~-------~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~--~~~~d~h~ 72 (196)
T cd04387 2 GVKISTVTKRERSKVPYIVRQCVE-------EVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVM--LSEMDVNA 72 (196)
T ss_pred CCCHHHHHHhcCCCCChHHHHHHH-------HHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccc--cccCCHHH
Confidence 4566667778888899 7889997 467889999999999999999999999999876422211 12379999
Q ss_pred HHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhH
Q psy3002 108 VASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNV 187 (240)
Q Consensus 108 va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nL 187 (240)
||++||.|||+||+||+|.++|+.|.++.+..++.++...++.++.+||+.|+.+|.+|+.||++|+++++.||||+.||
T Consensus 73 va~lLK~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 152 (196)
T cd04387 73 IAGTLKLYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNL 152 (196)
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHH
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccCCccc
Q psy3002 188 AIVWAPNLLRCKELE 202 (240)
Q Consensus 188 a~vfaP~l~~~~~~~ 202 (240)
|+||||+|++++..+
T Consensus 153 Aivf~P~Llr~~~~~ 167 (196)
T cd04387 153 ATVFGPTLLRPSEKE 167 (196)
T ss_pred HHHHccccCCCCccc
Confidence 999999999998754
No 28
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.6e-40 Score=272.35 Aligned_cols=175 Identities=25% Similarity=0.413 Sum_probs=150.7
Q ss_pred hhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHH
Q psy3002 34 SWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLL 112 (240)
Q Consensus 34 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lL 112 (240)
.......+++| ++.+|+. .++++|+.+|||||++|+..+++++++.+|++...++... ..|+|+||++|
T Consensus 6 ~~~~~~~~~IP~~l~~~i~-------~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~---~~~~~~va~~l 75 (185)
T cd04373 6 ANVVTSEKPIPIFLEKCVE-------FIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSK---DFTVNAVAGAL 75 (185)
T ss_pred HHHHhCCCCCCcHHHHHHH-------HHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccc---cCcHHHHHHHH
Confidence 33444677888 6788996 4677899999999999999999999999999876655322 26899999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhc
Q psy3002 113 KMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWA 192 (240)
Q Consensus 113 K~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfa 192 (240)
|+|||+||+||+|++.|+.|.++.+.++..+++..++.++..||+.||.+|++|+.||++|+++++.|+||++|||+|||
T Consensus 76 K~fLreLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~ 155 (185)
T cd04373 76 KSFFSELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFW 155 (185)
T ss_pred HHHHhcCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHc
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002 193 PNLLRCKELEYGGVAALQGVGVQAVVTEFLVVY 225 (240)
Q Consensus 193 P~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~ 225 (240)
|+|+++...+ +..+.. +.+++.+|++
T Consensus 156 P~L~~~~~~~---~~~~~~----~~~~q~~i~~ 181 (185)
T cd04373 156 PTLMRPDFTS---MEALSA----TRIYQTIIET 181 (185)
T ss_pred cccCCCCCCC---HHHHHc----cHHHHHHHHH
Confidence 9999987753 333333 4445555554
No 29
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=2e-40 Score=272.04 Aligned_cols=181 Identities=31% Similarity=0.431 Sum_probs=158.7
Q ss_pred chhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHH
Q psy3002 33 LSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASL 111 (240)
Q Consensus 33 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~l 111 (240)
++.+..++++.| ++.+|+. .++.+|+++|||||++|+..+++++++.+|++........ .|+|+||++
T Consensus 5 L~~~~~~~~~vP~~l~~~~~-------~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~----~~~~~va~~ 73 (186)
T cd04377 5 LSSLTSEDRSVPLVLEKLLE-------HIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLED----YPIHVITSV 73 (186)
T ss_pred HHHHHhCCCCCChHHHHHHH-------HHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCccc----CCHHHHHHH
Confidence 344445667788 7788986 4667899999999999999999999999999843211222 699999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhh
Q psy3002 112 LKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVW 191 (240)
Q Consensus 112 LK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vf 191 (240)
||+|||+||+||+|++.|++|.++....+..+++..++.++.+||+.|+.+|.+|+.||++|+.+++.|||++.|||+||
T Consensus 74 LK~flr~LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf 153 (186)
T cd04377 74 LKQWLRELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVF 153 (186)
T ss_pred HHHHHHcCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002 192 APNLLRCKELEYGGVAALQGVGVQAVVTEFLVVY 225 (240)
Q Consensus 192 aP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~ 225 (240)
||+|+|+++.. +....+.++.....++++||+.
T Consensus 154 ~P~ll~~~~~~-~~~~~~~d~~~~~~~~e~li~~ 186 (186)
T cd04377 154 APCILRCPDTA-DPLQSLQDVSKTTTCVETLIKE 186 (186)
T ss_pred hhHhcCCCCCC-CHHHHHHHHHHHHHHHHHHhhC
Confidence 99999998643 2345788899999999999974
No 30
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.9e-41 Score=275.03 Aligned_cols=179 Identities=24% Similarity=0.416 Sum_probs=153.8
Q ss_pred CCCcchhhhcc-----ccccc-cccccccccccccccccCC-CCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCcc
Q psy3002 29 CGPVLSWMELD-----NRGRR-LLGKCFWNSLSHFFMPEEC-PLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTI 101 (240)
Q Consensus 29 ~~~~~~~~~~~-----~~~~~-~~~~~~~~~l~~~~~~e~~-gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~ 101 (240)
|.|+-..++.+ ..+.| ++.+|+. .++++ ++.+|||||++|+..+++++++.+|++.+.+.... ..
T Consensus 3 Gv~L~~~~~~~~~~~~~~~iP~iv~~~i~-------~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~-~~ 74 (190)
T cd04400 3 GSPLEEAVELSSHKYNGRDLPSVVYRCIE-------YLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSS-SL 74 (190)
T ss_pred CCcHHHHHHHhccccCCCCCChHHHHHHH-------HHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCcccc-cc
Confidence 44544444442 45677 6788886 34444 58999999999999999999999999876554332 22
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCC
Q psy3002 102 VQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQS-KLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKT 180 (240)
Q Consensus 102 ~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~N 180 (240)
..|+|+||++||.|||+||+||+|.+.|+.|.++.+.. +..+++..++.++.+||+.|+.+|++|+.||++|+.+++.|
T Consensus 75 ~~d~h~va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~N 154 (190)
T cd04400 75 YPDVHTVAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVN 154 (190)
T ss_pred ccCHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 47999999999999999999999999999999988755 78899999999999999999999999999999999999999
Q ss_pred CCChhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCC
Q psy3002 181 GMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDK 232 (240)
Q Consensus 181 kM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~ 232 (240)
+||++|||+||||+|+++. .++..+|++||.||++
T Consensus 155 kM~~~NLa~vf~P~L~~~~-----------------~~~~~~~~~~~~~f~~ 189 (190)
T cd04400 155 KMNLRNVCIVFSPTLNIPA-----------------GIFVLFLTDFDCIFGG 189 (190)
T ss_pred CCChHHhhhhcCCCCCCCH-----------------HHHHHHHHHHHHHcCC
Confidence 9999999999999998764 3889999999999985
No 31
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=2.3e-40 Score=272.57 Aligned_cols=166 Identities=25% Similarity=0.333 Sum_probs=146.0
Q ss_pred cccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCC-CCCCCCCccccCHHHHHHHHHHHHhh
Q psy3002 41 RGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRI-PDLYTDDTIVQDIHSVASLLKMYFRE 118 (240)
Q Consensus 41 ~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~-~~~~~~~~~~~d~~~va~lLK~flr~ 118 (240)
+..| ++.+|+. .+|++|+++|||||++|+.. +.++++.||.+.. .++ ...|+|+||++||.|||+
T Consensus 13 ~~~P~iv~~ci~-------~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~-----~~~dv~~va~~LK~ylRe 79 (200)
T cd04388 13 DVAPPLLIKLVE-------AIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDL-----EQFDVAALADALKRYLLD 79 (200)
T ss_pred CCCCHHHHHHHH-------HHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCc-----ccccHHHHHHHHHHHHHh
Confidence 5566 7889997 68999999999999999775 7889999998632 333 237999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHh-cCCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhcccc
Q psy3002 119 LPNPLCTYQLYHSFVGAVQ-QSKLQDQLTQMRETVE--KLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNL 195 (240)
Q Consensus 119 Lp~pLi~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~--~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l 195 (240)
||+||||.+.|++|+++.+ ..+.++++..++.++. .||+.|+.+|+||+.||.+|++|++.|+||++|||+||||+|
T Consensus 80 LPePLip~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL 159 (200)
T cd04388 80 LPNPVIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLL 159 (200)
T ss_pred CCCccCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhh
Confidence 9999999999999999875 5677889999999997 899999999999999999999999999999999999999999
Q ss_pred ccCCccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002 196 LRCKELEYGGVAALQGVGVQAVVTEFLVVY 225 (240)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~ 225 (240)
||++..+ ..+...+..+|+.||.+
T Consensus 160 ~r~~~~~------~~~~~~~~~vvE~Li~~ 183 (200)
T cd04388 160 FRFQPAS------SDSPEFHIRIIEVLITS 183 (200)
T ss_pred cCCCccc------ccchhhHHHHHHHHHHH
Confidence 9998652 24456789999999985
No 32
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.6e-40 Score=273.49 Aligned_cols=179 Identities=25% Similarity=0.356 Sum_probs=148.8
Q ss_pred cccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCC-CCCCCCCccccCHHHHHHHHHHHH
Q psy3002 39 DNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRI-PDLYTDDTIVQDIHSVASLLKMYF 116 (240)
Q Consensus 39 ~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~-~~~~~~~~~~~d~~~va~lLK~fl 116 (240)
...++| ++.+|+. .++.+|+++|||||++|+..++++|++.||++.. .++.. ....|+|+||++||+||
T Consensus 14 ~~~~IP~iv~~ci~-------~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~--~~~~dvh~vA~lLK~fL 84 (207)
T cd04379 14 ESRDVPIVLQKCVQ-------EIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSE--ELYPDINVITGVLKDYL 84 (207)
T ss_pred CCCCcChHHHHHHH-------HHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCCh--hhcccHHHHHHHHHHHH
Confidence 345678 6789996 4678899999999999999999999999998753 22221 12358999999999999
Q ss_pred hhCCCCCCChhhHHHHHHHHhcC---CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhcc
Q psy3002 117 RELPNPLCTYQLYHSFVGAVQQS---KLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAP 193 (240)
Q Consensus 117 r~Lp~pLi~~~~~~~~~~~~~~~---~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP 193 (240)
|+||+||+|.++|+.|+++.... +...+...++.++.+||+.|+.+|++|+.||++|+++++.||||+.|||+||||
T Consensus 85 ReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLAivf~P 164 (207)
T cd04379 85 RELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGP 164 (207)
T ss_pred HhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhHHhhcc
Confidence 99999999999999999987643 334456778899999999999999999999999999999999999999999999
Q ss_pred ccccCCccccc---------hhhhhhhhhhHHHHHHHHHhcc
Q psy3002 194 NLLRCKELEYG---------GVAALQGVGVQAVVTEFLVVYY 226 (240)
Q Consensus 194 ~l~~~~~~~~~---------~~~~~~~~~~~~~vv~~LI~~~ 226 (240)
+|+++++.... ...+..++.....++++||+-|
T Consensus 165 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (207)
T cd04379 165 VLMFCSQEFSRYGISPTSKMAAVSTVDFKQHIEVLHYLLQIW 206 (207)
T ss_pred ccCCCCcccccccCCCCccccccchhhHHHHHHHHHHHHHhc
Confidence 99999875421 1222345666788999999865
No 33
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.4e-40 Score=274.79 Aligned_cols=193 Identities=18% Similarity=0.157 Sum_probs=158.7
Q ss_pred CCCcchhhhccccccc-cccccccccccccccccCCC--C----CCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCcc
Q psy3002 29 CGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECP--L----GDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTI 101 (240)
Q Consensus 29 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~g--l----~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~ 101 (240)
+.|+-...+.++.++| ++.+|+.. ++++| + ..+||||++|+.+++++||+.||++...+....+..
T Consensus 2 Gv~L~~~~~~~~~~VP~vV~~ci~~-------ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~ 74 (212)
T cd04399 2 GVDLETRCRLDKKVVPLIVSAILSY-------LDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILK 74 (212)
T ss_pred CCcHHHHHhhcCCCCCHHHHHHHHH-------HHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccc
Confidence 3455555566777899 67899862 44422 3 334999999999999999999999977654331122
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHh------cCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc
Q psy3002 102 VQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQ------QSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAA 175 (240)
Q Consensus 102 ~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~------~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~ 175 (240)
..|+|+||++||.|||+||+||+|+++|+.|.++.. ..+.++|+.+++.++..||+.|+.+|++|+.||++|++
T Consensus 75 ~~dv~~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~ 154 (212)
T cd04399 75 KFEPSTVASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYRLIE 154 (212)
T ss_pred cCCHHHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999987753 25678999999999999999999999999999999998
Q ss_pred CCCCC---CCChhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCC
Q psy3002 176 HGDKT---GMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDK 232 (240)
Q Consensus 176 ~s~~N---kM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~ 232 (240)
++..| ||+++|||+||||+|+|+..... ...+...+..++++||+||+.||++
T Consensus 155 ~~~~~~~~kM~~~nLa~vfgp~llr~~~~~~----~~~~~~~~~~~~e~Li~~~~~iF~~ 210 (212)
T cd04399 155 ITKMGESEEEYADKLATSLSREILRPIIESL----LTIGDKHGYKFFRDLLTHKDQIFSE 210 (212)
T ss_pred HHhcccccccCHHHHHHHhhhhhcCCCcccc----cccccHHHHHHHHHHHHhHHHhccc
Confidence 87665 69999999999999999976532 1234567889999999999999985
No 34
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=7.5e-40 Score=269.30 Aligned_cols=171 Identities=23% Similarity=0.333 Sum_probs=152.5
Q ss_pred ccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhh
Q psy3002 40 NRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRE 118 (240)
Q Consensus 40 ~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~ 118 (240)
.++.| ++.+|+. .++.+|+++|||||++|+..+++++++.+|+|...++... .|+|+||++||+|||+
T Consensus 17 ~~~vP~il~~~i~-------~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~----~d~~~va~~lK~flr~ 85 (189)
T cd04393 17 ENGVPAVVRHIVE-------YLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKE----ADVCSAASLLRLFLQE 85 (189)
T ss_pred CCCCChHHHHHHH-------HHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCcccc----CCHHHHHHHHHHHHHh
Confidence 55788 6788886 4667899999999999999999999999999987766543 7999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhc-CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhcccccc
Q psy3002 119 LPNPLCTYQLYHSFVGAVQQ-SKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197 (240)
Q Consensus 119 Lp~pLi~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~ 197 (240)
||+||+|.+.|+.|+++++. .+.+++...++.++.+||+.|+.+|.+++.||++|+++++.|+||+.|||+||||+||+
T Consensus 86 Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf~P~l~~ 165 (189)
T cd04393 86 LPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFGPDVFH 165 (189)
T ss_pred CCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhccCceeC
Confidence 99999999999999998764 36778899999999999999999999999999999999999999999999999999999
Q ss_pred CCccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002 198 CKELEYGGVAALQGVGVQAVVTEFLVVY 225 (240)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~vv~~LI~~ 225 (240)
.+.. ...+.+.....++++.||+|
T Consensus 166 ~~~~----~~~~~~~~~~~~~~~~li~~ 189 (189)
T cd04393 166 VYTD----VEDMKEQEICSRIMAKLLEN 189 (189)
T ss_pred CCCC----cccHHHHHHHHHHHHHHhcC
Confidence 8873 23445567789999999987
No 35
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.7e-38 Score=259.39 Aligned_cols=165 Identities=25% Similarity=0.272 Sum_probs=140.9
Q ss_pred ccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCC
Q psy3002 42 GRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELP 120 (240)
Q Consensus 42 ~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp 120 (240)
.+| ++.+|+.. +.+.+|+.+|||||++|+..+++++++.+|++.... .. ..|+|+||++||.|||+||
T Consensus 20 ~iP~il~~~i~~------l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~-~~----~~d~h~va~lLK~fLReLp 88 (187)
T cd04389 20 KLPWILTFLSEK------VLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPL-SG----LEDPHVPASLLKLWLRELE 88 (187)
T ss_pred CCCchHHHHHHH------HHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCc-cc----cCCHHHHHHHHHHHHHhCC
Confidence 456 56677753 235679999999999999999999999999987542 22 2699999999999999999
Q ss_pred CCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcC--CCCCCCChhhHHHhhccccccC
Q psy3002 121 NPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAH--GDKTGMTARNVAIVWAPNLLRC 198 (240)
Q Consensus 121 ~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~--s~~NkM~~~nLa~vfaP~l~~~ 198 (240)
+||+|.+.|++++..... ...+++++.+||+.|+.+|.+|+.||++|+++ ++.||||++|||+||||+|+++
T Consensus 89 ePli~~~~~~~~i~~~~~------~~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAivf~P~l~~~ 162 (187)
T cd04389 89 EPLIPDALYQQCISASED------PDKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNILRC 162 (187)
T ss_pred CCCCCHHHHHHHHHhhcC------HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHccccCCC
Confidence 999999999999876531 23567889999999999999999999999975 4789999999999999999998
Q ss_pred CccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002 199 KELEYGGVAALQGVGVQAVVTEFLVVY 225 (240)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~vv~~LI~~ 225 (240)
+..+ ....+++......+++.||+|
T Consensus 163 ~~~~--~~~~~~~~~~~~~~~~~lI~~ 187 (187)
T cd04389 163 TSDD--PRVIFENTRKEMSFLRTLIEH 187 (187)
T ss_pred CCCC--HHHHHHccHHHHHHHHHHhcC
Confidence 7654 566678889999999999987
No 36
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=100.00 E-value=3.4e-36 Score=244.10 Aligned_cols=170 Identities=38% Similarity=0.609 Sum_probs=152.5
Q ss_pred cc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCC-CCCCccccCHHHHHHHHHHHHhhCC
Q psy3002 43 RR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDL-YTDDTIVQDIHSVASLLKMYFRELP 120 (240)
Q Consensus 43 ~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~-~~~~~~~~d~~~va~lLK~flr~Lp 120 (240)
.| ++.+|+. .+++.|+.+|||||++|+..+++++++.++++...+. ... .|+|++|++||.|||+||
T Consensus 3 vP~~l~~~~~-------~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~va~~lK~~Lr~Lp 71 (174)
T smart00324 3 IPIIVEKCIE-------YLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSE----YDVHDVAGLLKLFLRELP 71 (174)
T ss_pred CChHHHHHHH-------HHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCccccc----CCHHHHHHHHHHHHHhCC
Confidence 45 5667775 4667899999999999999999999999999987652 222 799999999999999999
Q ss_pred CCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCc
Q psy3002 121 NPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200 (240)
Q Consensus 121 ~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~ 200 (240)
+||+|.+.|+.|.++.+..+.+++...++.++.+||+.|+.+|.+|+.||++|+.+++.|+||++|||+||||+|++++.
T Consensus 72 ~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~ 151 (174)
T smart00324 72 EPLIPYELYEEFIEAAKVEDETERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPD 151 (174)
T ss_pred CccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCc
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999999999987
Q ss_pred cccchhhhhhhhhhHHHHHHHHHhcc
Q psy3002 201 LEYGGVAALQGVGVQAVVTEFLVVYY 226 (240)
Q Consensus 201 ~~~~~~~~~~~~~~~~~vv~~LI~~~ 226 (240)
.+ ............++++||+|.
T Consensus 152 ~~---~~~~~~~~~~~~~i~~li~~~ 174 (174)
T smart00324 152 GE---VASLKDIRHQNTVVETLIENA 174 (174)
T ss_pred cc---HHHHHHHHHHHHHHHHHHhcC
Confidence 63 224677888999999999973
No 37
>KOG4407|consensus
Probab=100.00 E-value=1e-36 Score=292.21 Aligned_cols=173 Identities=29% Similarity=0.477 Sum_probs=160.6
Q ss_pred cccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCC-CCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHh
Q psy3002 59 MPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIP-DLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQ 137 (240)
Q Consensus 59 ~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~-~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~ 137 (240)
++|++||+..||||||||...|..|++.++.+.+. +....++.|.|+++|.+|||.|||.|||||+|..+|..|+++-+
T Consensus 1184 vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSSLLK~F~RkLPepL~t~~~Y~~FIeAnr 1263 (1973)
T KOG4407|consen 1184 VVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSSLLKMFLRKLPEPLLTDKLYPFFIEANR 1263 (1973)
T ss_pred HHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHHHHHHHHHhCCcccccccchhhhhhhcc
Confidence 68999999999999999999999999999988532 23334678899999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCccccchhhhhhhhhhHHH
Q psy3002 138 QSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAV 217 (240)
Q Consensus 138 ~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~ 217 (240)
..+.-+|+..|++++.+||..+|.+|++|+.||++|+.|++.|||-..|||++|||+|+|+++++ ......++..+++
T Consensus 1264 k~~~l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi~FGPsiVRts~Dn--m~tmVthM~dQck 1341 (1973)
T KOG4407|consen 1264 KSTHLNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAIMFGPSIVRTSDDN--MATMVTHMSDQCK 1341 (1973)
T ss_pred cccHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhcccccccccccceeEEeccceeccCCcc--HHHHhhcchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999876 4445689999999
Q ss_pred HHHHHHhcchhcCCCC
Q psy3002 218 VTEFLVVYYAAIFDKK 233 (240)
Q Consensus 218 vv~~LI~~~~~iF~~~ 233 (240)
||+.||.+||++|++.
T Consensus 1342 IVEtLI~~~dwfF~es 1357 (1973)
T KOG4407|consen 1342 IVETLIHYNDWFFDES 1357 (1973)
T ss_pred HHHHHHhhhhheeccC
Confidence 9999999999999864
No 38
>KOG1451|consensus
Probab=100.00 E-value=2.1e-35 Score=266.84 Aligned_cols=221 Identities=27% Similarity=0.371 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccC--CCcchhhhccccccccccccccccccccccccCCCCCCcceeeecCCcHHHH
Q psy3002 4 QQIYMKRLLTKYLERLSTIAGSLINC--GPVLSWMELDNRGRRLLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLC 81 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~ 81 (240)
-|..+.++.--|++.+-...-+...+ -...-++++|.-|..++.+|+. .+|+.|++++|+||.-|..++++
T Consensus 348 mQALSE~drrlWmeAMDG~ep~Y~s~~~~~~~~~~qLd~iGF~fvrkCI~-------i~Et~GI~eqGlYR~vGvns~VQ 420 (812)
T KOG1451|consen 348 MQALSEKDRRLWMEAMDGAEPSYTSGENCSTYKQTQLDDIGFEFVRKCID-------ILETSGIHEQGLYRNVGVNSKVQ 420 (812)
T ss_pred hHhhhhhHHHHHHHHhcCCCccccCccccchhhhhhhhhhhHHHHHHHHH-------HHHhcCcccccchhhccchHHHH
Confidence 37788889999999887775555444 3455577899999999999997 68999999999999999999999
Q ss_pred HHHHHh-cCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHH
Q psy3002 82 ITRHTF-DEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHY 160 (240)
Q Consensus 82 ~L~~~~-d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~ 160 (240)
+|...+ |.....+...+....+|+-++++.||.|||.||+||++++++..|+.+++..|.+-|+.+++.++.+||..||
T Consensus 421 Klln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~LHk~FI~AAKsdnq~yRv~aIHsLVHkLPEKNR 500 (812)
T KOG1451|consen 421 KLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYELHKVFINAAKSDNQTYRVDAIHSLVHKLPEKNR 500 (812)
T ss_pred HHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHHHHHHHHHHhccchhhhHHHHHHHHHhccHhhH
Confidence 987754 4333222221111337999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCCC
Q psy3002 161 RTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKKN 234 (240)
Q Consensus 161 ~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~ 234 (240)
..|..|++||..|+.|+..|.||..||++||||+|+|+.+. ..+++.+++.++-||+.||+||++||...+
T Consensus 501 eMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQEE---TVAAiMdIKFQNIVVEILIEnyeKIF~t~P 571 (812)
T KOG1451|consen 501 EMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQEE---TVAAIMDIKFQNIVVEILIENYEKIFKTKP 571 (812)
T ss_pred HHHHHHHHHHHHHHhhhhcccccccccceeecccccCchHH---HHHHHHcchhhhhhHHHHHhhhHHHhcCCC
Confidence 99999999999999999999999999999999999999986 677788999999999999999999998543
No 39
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=100.00 E-value=1.5e-34 Score=232.50 Aligned_cols=167 Identities=31% Similarity=0.527 Sum_probs=149.9
Q ss_pred cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCC
Q psy3002 45 LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLC 124 (240)
Q Consensus 45 ~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi 124 (240)
++.+|+. .++++|+.+|||||++|+..+++++++.++.+........ .|+|++|++||.|||+||+||+
T Consensus 3 ~l~~~~~-------~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~----~~~~~va~~lK~~l~~Lp~pli 71 (169)
T cd00159 3 IIEKCIE-------YLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLED----YDVHDVASLLKLYLRELPEPLI 71 (169)
T ss_pred HHHHHHH-------HHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccc----cCHHHHHHHHHHHHHcCCCccC
Confidence 3455665 3566899999999999999999999999999987642223 7999999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCccccc
Q psy3002 125 TYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYG 204 (240)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~ 204 (240)
|.+.|+.++.+....+...+...++.++..||+.|+.+|.+++.||++|+.+++.|+|++.|||+||||+|++++..+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~-- 149 (169)
T cd00159 72 PFELYDEFIELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD-- 149 (169)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc--
Confidence 999999999999988899999999999999999999999999999999999999999999999999999999998753
Q ss_pred hhhhhhhhhhHHHHHHHHHhc
Q psy3002 205 GVAALQGVGVQAVVTEFLVVY 225 (240)
Q Consensus 205 ~~~~~~~~~~~~~vv~~LI~~ 225 (240)
.........+..++++||+|
T Consensus 150 -~~~~~~~~~~~~~~~~li~~ 169 (169)
T cd00159 150 -DELLEDIKKLNEIVEFLIEN 169 (169)
T ss_pred -HHHHHHhHHHHHHHHHHHhC
Confidence 34456778889999999975
No 40
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=100.00 E-value=5.8e-34 Score=239.48 Aligned_cols=180 Identities=19% Similarity=0.237 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCC--Cc----chhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCc
Q psy3002 5 QIYMKRLLTKYLERLSTIAGSLINCG--PV----LSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPS 77 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~s~~~~~--~~----~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~ 77 (240)
..|...++...++.+.....-..... .. ..........+| ++-+|+. .++++|+.+|||||++|+.
T Consensus 6 ~~~~~s~fG~sl~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iP~~l~~~i~-------~L~~~gl~~eGiFR~~G~~ 78 (220)
T cd04380 6 GVYLPSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVD-------YLYTRGLAQEGLFEEPGLP 78 (220)
T ss_pred eeEecccccccHHHHhcCCchHhhccccccccccCCCCCCCccccCHHHHHHHH-------HHHHcCCcccCcccCCCcc
Confidence 34455555555666655443333211 00 011112333444 4556665 3667899999999999999
Q ss_pred HH----HHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy3002 78 LP----LCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVE 153 (240)
Q Consensus 78 ~~----i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 153 (240)
.+ ++++++.+|++.... .. .|+|+||++||.|||+||+||+|.++|+.|.++... + ...++.++.
T Consensus 79 ~~~~~~i~~l~~~ld~~~~~~--~~----~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~-~----~~~~~~ll~ 147 (220)
T cd04380 79 SEPGELLAEIRDALDTGSPFN--SP----GSAESVAEALLLFLESLPDPIIPYSLYERLLEAVAN-N----EEDKRQVIR 147 (220)
T ss_pred cchHHHHHHHHHHHhCCCCCC--CC----CCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcC-c----HHHHHHHHH
Confidence 99 999999999996543 22 799999999999999999999999999999988621 1 234677888
Q ss_pred -cCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCccc
Q psy3002 154 -KLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202 (240)
Q Consensus 154 -~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~ 202 (240)
.||+.|+.+|.||+.||++|+++++.|+|+++|||+||||+|++++...
T Consensus 148 ~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~ 197 (220)
T cd04380 148 ISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPPRA 197 (220)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCccc
Confidence 9999999999999999999999999999999999999999999999764
No 41
>KOG4270|consensus
Probab=100.00 E-value=2.4e-33 Score=258.77 Aligned_cols=172 Identities=29% Similarity=0.410 Sum_probs=158.4
Q ss_pred cccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhc
Q psy3002 59 MPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQ 138 (240)
Q Consensus 59 ~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~ 138 (240)
+..++|+..|||||++|..++++.+|+++|.|..+... . .|||++||+||.||||||+|++++++|++|+.+.+.
T Consensus 177 l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~-~----iDvH~~agllKayLRELPepvl~~nL~~e~~qv~~~ 251 (577)
T KOG4270|consen 177 LLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQL-Y----IDVHCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNC 251 (577)
T ss_pred hhhhcCccccceeccCCCchHHHHHHHHHcCCcccccc-c----CCHHHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhc
Confidence 45689999999999999999999999999999877654 3 799999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCccccchhhhhhhhhhHHHH
Q psy3002 139 SKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVV 218 (240)
Q Consensus 139 ~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~v 218 (240)
.+++++.+.++.++..||+.|+..|+|+++||..|.++++.|||+++|||+||||++++..++-...+...+-......+
T Consensus 252 ~~e~~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlAiV~gPNl~~~~~p~~~l~~avqvs~~~~~l 331 (577)
T KOG4270|consen 252 ENEDEKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLAIVFGPNLLWMKDPLTALMYAVQVSNFLKGL 331 (577)
T ss_pred cCHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhceeEecCCccccCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998655556666777777888
Q ss_pred HHHHHhcchhcCCCCCC
Q psy3002 219 TEFLVVYYAAIFDKKNP 235 (240)
Q Consensus 219 v~~LI~~~~~iF~~~~~ 235 (240)
++..|++++..|+....
T Consensus 332 ie~~l~~~~~~~~g~~~ 348 (577)
T KOG4270|consen 332 IEKTLEERDTSFPGELE 348 (577)
T ss_pred HHHHHHhhhccCCcccc
Confidence 99999999999987663
No 42
>KOG2200|consensus
Probab=100.00 E-value=2.1e-33 Score=254.33 Aligned_cols=195 Identities=22% Similarity=0.278 Sum_probs=165.9
Q ss_pred cCCCcchhhhcccccccc-ccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHH
Q psy3002 28 NCGPVLSWMELDNRGRRL-LGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIH 106 (240)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~ 106 (240)
++-|+....+......|. +.+.+. .++++|++++||||++|.+++|+.||+.++...+......+. ...|
T Consensus 301 FGVPL~vll~rtG~~lP~~iQq~m~-------~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~--~~~~ 371 (674)
T KOG2200|consen 301 FGVPLTVLLQRTGQPLPLSIQQAMR-------YLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDS--QSAH 371 (674)
T ss_pred eecCceeeeccCCCcCcHHHHHHHH-------HHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccch--hhhh
Confidence 555777777766666663 344443 477899999999999999999999999998876664433322 6899
Q ss_pred HHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhh
Q psy3002 107 SVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARN 186 (240)
Q Consensus 107 ~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~n 186 (240)
+||++||+|||+||+||||.++.+.|..+++.....+++++++.+|..||++||.+|+.|+.||++|+.++++|+||+.|
T Consensus 372 DvAdlLKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~~N 451 (674)
T KOG2200|consen 372 DVADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAILLLPDENREALKTLLEFLNDVIANEEENQMTLMN 451 (674)
T ss_pred HHHHHHHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccchhh
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccCCccccc---------------hhhhhhhhhhHHHHHHHHHhcchhcCC
Q psy3002 187 VAIVWAPNLLRCKELEYG---------------GVAALQGVGVQAVVTEFLVVYYAAIFD 231 (240)
Q Consensus 187 La~vfaP~l~~~~~~~~~---------------~~~~~~~~~~~~~vv~~LI~~~~~iF~ 231 (240)
||+||||+||.......+ ....+.....++.++..||.+++.+|.
T Consensus 452 lsvcmAPsLF~l~~~~~d~spr~~~~k~~~g~p~~kel~~a~aaa~~l~~mI~y~k~Lf~ 511 (674)
T KOG2200|consen 452 LSVCMAPSLFHLNALKLDSSPRVRQKKSETGKPDQKELNEALAAAQGLAHMIKYQKLLFT 511 (674)
T ss_pred hhhhhcchHHhhccCCCCCCccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999987542211 134466677789999999999999994
No 43
>KOG1450|consensus
Probab=99.98 E-value=1.4e-32 Score=254.60 Aligned_cols=190 Identities=28% Similarity=0.425 Sum_probs=168.7
Q ss_pred CCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHH
Q psy3002 30 GPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSV 108 (240)
Q Consensus 30 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~v 108 (240)
.++-...+..+..+| ++.+|+. .+|..|++.+||||++|+...|++||.++|.+...++. +..+.|+|+|
T Consensus 459 s~Lealc~rE~~~vP~~V~~c~~-------~IE~~GLd~~GiYRVsgnl~~Vnklr~~~d~d~~l~l~--~~~~~dihai 529 (650)
T KOG1450|consen 459 SPLEALCQRENGLVPKIVRLCIE-------HIEKFGLDSDGIYRVSGNLASVNKLREQSDQDNSLDLA--DDRWDDIHAI 529 (650)
T ss_pred ccHHHHhhccCCCcchHHHHHHH-------HHhhhcccCCceeeecchHHHHHHHHHhcCcccccccc--ccchhHHHHH
Confidence 344445566777788 8889997 69999999999999999999999999999976655543 3456899999
Q ss_pred HHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHH
Q psy3002 109 ASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVA 188 (240)
Q Consensus 109 a~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa 188 (240)
+++||.||||||+||+|..++..|..+....+...+...+.+++..||++|+.||++|+.||++|.+|++.|||+.+|||
T Consensus 530 ~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~NLa 609 (650)
T KOG1450|consen 530 TGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHNLA 609 (650)
T ss_pred HHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCC
Q psy3002 189 IVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFD 231 (240)
Q Consensus 189 ~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~ 231 (240)
+||||+|+.+.... ......+..+.++|+.||+++..+|+
T Consensus 610 IVfgpTl~~~~~~~---~~~a~~~~~~~~ivq~lle~~~~~f~ 649 (650)
T KOG1450|consen 610 IVFGPTLIKPEQET---SSEAIHSTYQSQIVQLLLENVSSAFG 649 (650)
T ss_pred EEeccccccccccc---cchhhHHhHHHHHHHHHHHhhHhhcc
Confidence 99999999977652 22334667789999999999999996
No 44
>KOG4269|consensus
Probab=99.97 E-value=7.8e-33 Score=259.25 Aligned_cols=176 Identities=26% Similarity=0.412 Sum_probs=154.5
Q ss_pred hccccccc-ccccccccccccccccc-CCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHH
Q psy3002 37 ELDNRGRR-LLGKCFWNSLSHFFMPE-ECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKM 114 (240)
Q Consensus 37 ~~~~~~~~-~~~~~~~~~l~~~~~~e-~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~ 114 (240)
+....+.| ++-+|+.+ +| .+|+++|||||++|+.+.|+.|+++||.+-..++... +...|+|+|||+||+
T Consensus 913 ~~n~s~lP~VVyrCvEy-------le~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~-d~E~dVn~IaGlLKL 984 (1112)
T KOG4269|consen 913 KRNVSGLPYVVYRCVEY-------LESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSM-DSEMDVNAIAGLLKL 984 (1112)
T ss_pred eecccCCchHHHHHHHH-------HHhccccchhceEEecccHHHHHHHHHHhccccCchhhhc-cccccHHHHHHHHHH
Confidence 34555777 67788863 55 7899999999999999999999999999854444332 223789999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccc
Q psy3002 115 YFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPN 194 (240)
Q Consensus 115 flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~ 194 (240)
|||+||+|||+.++|..|.......++......+..+|.+||++|..++.+|+.||++|++++..|||+++|||+||+|+
T Consensus 985 YlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvNKMnlrNlciVFsPT 1064 (1112)
T KOG4269|consen 985 YLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVNKMNLRNLCIVFSPT 1064 (1112)
T ss_pred HHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhcccccccccceeeeeccc
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCCCCCC
Q psy3002 195 LLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKKNPRA 237 (240)
Q Consensus 195 l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~~~~ 237 (240)
|.+|.+ +...+|.+|+.||.+..+..
T Consensus 1065 LniPse-----------------~~~~li~n~d~if~dv~~q~ 1090 (1112)
T KOG4269|consen 1065 LNIPSE-----------------IESKLILNYDHIFTDVMRQV 1090 (1112)
T ss_pred ccCcHH-----------------hhhhhccchhhhhccchHHH
Confidence 999875 45568888999998876543
No 45
>KOG1117|consensus
Probab=99.97 E-value=3.3e-32 Score=254.20 Aligned_cols=201 Identities=22% Similarity=0.344 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHhhcccccCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcC
Q psy3002 11 LLTKYLERLSTIAGSLINCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDE 89 (240)
Q Consensus 11 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~ 89 (240)
++..|... |.+.....|.-+..++++...+| ++.+|+. ++..+|+..|||||.+|...++..|-+.|.+
T Consensus 698 dft~W~~A---Iekaa~~~gt~LqeqqLs~~dIPvIVd~CI~-------FVTqyGl~cegIYrknG~~~~~~~lLeslr~ 767 (1186)
T KOG1117|consen 698 DFTVWHTA---IEKAAGTDGTALQEQQLSKNDIPVIVDSCIA-------FVTQYGLGCEGIYRKNGDPLHISRLLESLRK 767 (1186)
T ss_pred hHHHHHHH---HHHHhcCCcchhhhhhccCCCCcEehHHHHH-------HHHHhCccceeeeccCCchHHHHHHHHHHhh
Confidence 45666654 44555677889999999999999 6889997 6889999999999999999999999999988
Q ss_pred CCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q psy3002 90 DRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGH 169 (240)
Q Consensus 90 ~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~ 169 (240)
+........++ +.+.+|+++||+|||+|++||+|.++|..|++++...+++++++....+|..||..||.||+.|+.|
T Consensus 768 Dars~~lrege--h~vedVtdvLk~FlrdlddpLft~~~~~~w~eaae~~d~~Er~~rY~~lI~~lp~VnRaTLkalIgH 845 (1186)
T KOG1117|consen 768 DARSVKLREGE--HQVEDVTDVLKRFLRDLDDPLFTKELYPYWIEAAETQDDKERIKRYGALIRSLPGVNRATLKALIGH 845 (1186)
T ss_pred ccceeeccCCc--chHHHHHHHHHHHHHhCCccccchhhhhhHHHhhhccchHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 87544333333 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCChhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCC
Q psy3002 170 LSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKK 233 (240)
Q Consensus 170 L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~ 233 (240)
|++|..++++|+|+++|||.||||+||...... .++..|++.||++|..+|+-+
T Consensus 846 Ly~Vqk~s~~N~mnvhNLAlVFa~sLFqTdgqd----------ehevnVledLingYvvVF~v~ 899 (1186)
T KOG1117|consen 846 LYRVQKCSEINQMNVHNLALVFAPSLFQTDGQD----------EHEVNVLEDLINGYVVVFEVD 899 (1186)
T ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhheecCCCc----------hhhhhHHHHHhcCceEEEEec
Confidence 999999999999999999999999999976431 257889999999999999743
No 46
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.97 E-value=1.4e-32 Score=217.69 Aligned_cols=140 Identities=34% Similarity=0.520 Sum_probs=126.3
Q ss_pred cccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhc
Q psy3002 59 MPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQ 138 (240)
Q Consensus 59 ~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~ 138 (240)
.++++|+.++||||++|+..+++++++.++.+..... .....|+|+||++||.||++||+||+|.+.|+.|.++.+.
T Consensus 10 ~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~~~~~~~ 86 (151)
T PF00620_consen 10 YLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNE---NLENYDVHDVASLLKRFLRELPEPLIPSELYDKFIAASKS 86 (151)
T ss_dssp HHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCST---TGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccc---cccccChhhccccceeeeeccccchhhhhHHHHHhhhhcc
Confidence 3567899999999999999999999999999987642 1223799999999999999999999999999999998888
Q ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCcc
Q psy3002 139 SKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKEL 201 (240)
Q Consensus 139 ~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~ 201 (240)
.+.+++.+.++.++..||+.|+.+|.+++.||++|+.+++.|+||+.|||+||||+|++++..
T Consensus 87 ~~~~~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~~ 149 (151)
T PF00620_consen 87 ADEEEQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPSS 149 (151)
T ss_dssp SSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGSTS
T ss_pred chhhHHHHHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCcC
Confidence 899999999999999999999999999999999999999999999999999999999998763
No 47
>KOG3564|consensus
Probab=99.96 E-value=1.2e-29 Score=225.23 Aligned_cols=179 Identities=21% Similarity=0.309 Sum_probs=163.2
Q ss_pred ccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCC
Q psy3002 42 GRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELP 120 (240)
Q Consensus 42 ~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp 120 (240)
-+| ++..|+. .||.+||++|||||++|....+++|++.|-++..+-.... .|+|++|++||.|||+|.
T Consensus 361 MIPalVVHCVn-------eIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~----~Dihvic~~lKdFLR~Lk 429 (604)
T KOG3564|consen 361 MIPALVVHCVN-------EIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGN----DDIHVICCCLKDFLRNLK 429 (604)
T ss_pred cchHHHHHHHH-------HHHHccccccceeeccccHHHHHHHHHHHhccCCCCccCC----cchhHHHHHHHHHHHhcc
Confidence 344 4566776 5999999999999999999999999999999987554444 799999999999999999
Q ss_pred CCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCc
Q psy3002 121 NPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200 (240)
Q Consensus 121 ~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~ 200 (240)
+||||.....+|..++..+|+..-..++...+..||.+||.||.||+-|+.+||+ |+.|||+..|||.+|||+++..+.
T Consensus 430 ePLip~~~~rdf~eAa~~tD~dn~~~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~v 508 (604)
T KOG3564|consen 430 EPLIPFRLRRDFMEAAEITDEDNSILALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAV 508 (604)
T ss_pred cccccchHHHHHHHHhcCCCchhHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCC
Confidence 9999999999999999999999999999999999999999999999999999998 899999999999999999999888
Q ss_pred cccchhhhhhhhhhHHHHHHHHHhcchhcCCC
Q psy3002 201 LEYGGVAALQGVGVQAVVTEFLVVYYAAIFDK 232 (240)
Q Consensus 201 ~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~ 232 (240)
++++....++++..+.++++.|++--...|..
T Consensus 509 p~pd~~~~l~dv~~q~rvmkaLlelp~~yWsq 540 (604)
T KOG3564|consen 509 PNPDQVTMLQDVKTQPRVMKALLELPLEYWSQ 540 (604)
T ss_pred CCccHhHHHHhhhhhHHHHHHHHhCCHHHHHH
Confidence 88888889999999999999999877766653
No 48
>KOG2710|consensus
Probab=99.96 E-value=1.3e-29 Score=226.03 Aligned_cols=183 Identities=27% Similarity=0.372 Sum_probs=155.4
Q ss_pred ccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCC
Q psy3002 42 GRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELP 120 (240)
Q Consensus 42 ~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp 120 (240)
.+| ++.+|.. .+...|+.+.||||++|+..++++|++.||.+.+......++..+++|+||++||+|||+||
T Consensus 93 ~IP~vv~~c~~-------~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp 165 (412)
T KOG2710|consen 93 QIPRVVAKCGQ-------YLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLP 165 (412)
T ss_pred eCcHHHHHHHH-------HHHHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCC
Confidence 455 5677775 35677999999999999999999999999999543333333445899999999999999999
Q ss_pred CCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCC-----------CCChhhHHH
Q psy3002 121 NPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKT-----------GMTARNVAI 189 (240)
Q Consensus 121 ~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~N-----------kM~~~nLa~ 189 (240)
+||+|.++|+.|+..+....+.+++..++.++..||..|+++|.+++.||+.++.|++.| +|++.|||+
T Consensus 166 ~pLLP~~LY~~f~~p~kl~~e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlat 245 (412)
T KOG2710|consen 166 DPLLPLELYESFINPAKLEPETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLAT 245 (412)
T ss_pred cccCCHHHHHHHhhhhcCCcHHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhh
Confidence 999999999999999998888899999999999999999999999999999999999999 999999999
Q ss_pred hhccccccCCc-----cccchhhhhhhhhhHHHHHHHHHhcchhcCC
Q psy3002 190 VWAPNLLRCKE-----LEYGGVAALQGVGVQAVVTEFLVVYYAAIFD 231 (240)
Q Consensus 190 vfaP~l~~~~~-----~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~ 231 (240)
||+|+++.... .+............+..++..+++|++.+|.
T Consensus 246 If~P~iL~k~~~~~~~~s~~~~~~~s~~~~i~~~~~~~~~N~e~~f~ 292 (412)
T KOG2710|consen 246 IFGPNILYKLKGSHKELSVTGVANESESEAIVNFAQMMIENLEALFQ 292 (412)
T ss_pred hhcchhhhcccCCCcccccccccchhhHHHHHHHHHHhhhhHHHhhc
Confidence 99999999421 1111222234445678899999999999998
No 49
>KOG4406|consensus
Probab=99.96 E-value=1.4e-29 Score=222.19 Aligned_cols=167 Identities=26% Similarity=0.433 Sum_probs=150.6
Q ss_pred ccCCC-CCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhc
Q psy3002 60 PEECP-LGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQ 138 (240)
Q Consensus 60 ~e~~g-l~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~ 138 (240)
.+..| +++||+||.||+.+.+.++.+.+++|..+++... .|+|..|.++|.|||+||+||++.++|+.+.....
T Consensus 282 L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~----~~~h~~avllKtF~R~LpePL~t~~~y~~lt~~~~- 356 (467)
T KOG4406|consen 282 LQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVY----KDLHAPAVLLKTFLRSLPEPLLTFRLYESLTGFSN- 356 (467)
T ss_pred hhccceecccceeccccCccchHHHHHHhcCCCcccHHHh----ccchhhHHHHHHHHhcCCcccchhhhhhhhhcccc-
Confidence 45667 9999999999999999999999999999988644 66999999999999999999999999998876554
Q ss_pred CCHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCccccchhhhhhhhhhHHH
Q psy3002 139 SKLQDQLTQMRETVEK-LPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAV 217 (240)
Q Consensus 139 ~~~~~~~~~l~~~l~~-Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~ 217 (240)
.+..++..+.+++++. ||+.|+.++++++.||.+|++|+..|+||+.|||+||||+|+++... ...+.++...+.
T Consensus 357 ~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~sNLa~vfGpnl~w~~~~----s~tl~q~npin~ 432 (467)
T KOG4406|consen 357 VDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTASNLAVVFGPNLLWAQDE----SLTLKQINPINK 432 (467)
T ss_pred chHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccccceeeecccccccccc----cccHHHhccHHH
Confidence 4567889999999988 99999999999999999999999999999999999999999999874 345667788899
Q ss_pred HHHHHHhcchhcCCCCCC
Q psy3002 218 VTEFLVVYYAAIFDKKNP 235 (240)
Q Consensus 218 vv~~LI~~~~~iF~~~~~ 235 (240)
+.+++|+||+.+|.....
T Consensus 433 F~~~li~~~~~~f~~~~~ 450 (467)
T KOG4406|consen 433 FTKFLIEHYKKLFTTPEN 450 (467)
T ss_pred HHHHHHHhhhhccCCCCC
Confidence 999999999999986553
No 50
>KOG1453|consensus
Probab=99.93 E-value=8.3e-27 Score=229.38 Aligned_cols=190 Identities=29% Similarity=0.429 Sum_probs=153.2
Q ss_pred ccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHH
Q psy3002 38 LDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYF 116 (240)
Q Consensus 38 ~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~fl 116 (240)
....+.| ++.+|+. .++.+|+..|||||++|...+++.|...|+.+........ .|+|++++++|.||
T Consensus 613 ~e~~~vP~i~~~c~~-------~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~----~dih~vtsVlK~yL 681 (918)
T KOG1453|consen 613 YEPSTVPFILKKCLR-------EIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLST----PDIHAVTSVLKLYL 681 (918)
T ss_pred cCCCCCCHHHHHHHH-------HHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCC----CChHHHHHHHHHHH
Confidence 3566888 5677875 5889999999999999999999999999999874444444 79999999999999
Q ss_pred hhCCCCCCChhhHHHHHHHHhcCCHH------HHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHh
Q psy3002 117 RELPNPLCTYQLYHSFVGAVQQSKLQ------DQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIV 190 (240)
Q Consensus 117 r~Lp~pLi~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~v 190 (240)
|+||+||+++..|+.|+.+.+..... +++..+..++..||+.|+.+|++|+.||.+|+.+++.|+|+..|||+|
T Consensus 682 r~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlaiv 761 (918)
T KOG1453|consen 682 RKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAIV 761 (918)
T ss_pred HhccccccccchHHHHHhhhccccccccccccccchhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCcccc
Confidence 99999999999999999998873333 488999999999999999999999999999999999999999999999
Q ss_pred hccccccCCccccch-hhhhhhhhhHHHHHHHHHhcchhcCCCCCCCCC
Q psy3002 191 WAPNLLRCKELEYGG-VAALQGVGVQAVVTEFLVVYYAAIFDKKNPRAS 238 (240)
Q Consensus 191 faP~l~~~~~~~~~~-~~~~~~~~~~~~vv~~LI~~~~~iF~~~~~~~~ 238 (240)
|||+++|+++..... .........+..+.++.+..+..+|.++++...
T Consensus 762 F~Ptllr~~d~~~~~~~~~~~~y~~~~~l~~~~~~~~~~~~~e~p~~~~ 810 (918)
T KOG1453|consen 762 FAPTLLRPPDGTRDLTDMKDKNYPLAAQLPEYKITLHNLSFLEEPPKIL 810 (918)
T ss_pred ccCcccCCCCCcchhhhhccchhhHHHhcchHHHHHhhcccccCCcccc
Confidence 999999999854211 111122223444444555555666666655543
No 51
>KOG1452|consensus
Probab=99.82 E-value=1.1e-20 Score=161.16 Aligned_cols=178 Identities=17% Similarity=0.170 Sum_probs=141.5
Q ss_pred cccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHh
Q psy3002 39 DNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFR 117 (240)
Q Consensus 39 ~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr 117 (240)
..+..| ++.+|+. .+|++|++..|+||+.|+..+-+-||+.|+.+....... .+...|.++++|++|.|+|
T Consensus 196 E~~~~PIvlrR~~~-------EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~-~E~iPD~nvItg~~kD~lr 267 (442)
T KOG1452|consen 196 EPESPPIVLRRLYA-------EIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELG-AESIPDYNVITGDSKDELR 267 (442)
T ss_pred CCCCCchHHHHHHH-------HHHhcccccccceeeechhhHHHHHHHHhccCCcccccc-cccCCCcceeecccHhHHH
Confidence 344455 4566775 589999999999999999999999999999876443332 2455899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHh---cCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccc
Q psy3002 118 ELPNPLCTYQLYHSFVGAVQ---QSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPN 194 (240)
Q Consensus 118 ~Lp~pLi~~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~ 194 (240)
||||||++...++...+++. -.|.+.....+-.+|..|+..++.+|..++.||..|..+|+.|+|++..||++|||-
T Consensus 268 ElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~Ls~i~~P~ 347 (442)
T KOG1452|consen 268 ELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTRLSLIFAPL 347 (442)
T ss_pred hCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHHHHHHhhhh
Confidence 99999999999998888765 355677778888999999999999999999999999999999999999999999999
Q ss_pred cccCCccccchhhhhhhhhhHHHHHHHHHhcc
Q psy3002 195 LLRCKELEYGGVAALQGVGVQAVVTEFLVVYY 226 (240)
Q Consensus 195 l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~ 226 (240)
||-+.+.- ...+.........|.+++|+.+
T Consensus 348 L~~~~~t~--sP~t~~~~sk~~AV~~~~i~~~ 377 (442)
T KOG1452|consen 348 LFFCLDTF--SPYTISPTSKMAAVRTLDINQA 377 (442)
T ss_pred HHHhhccc--CCCccCCcchhHHHHHhhhhcc
Confidence 98876421 1111122233345555555554
No 52
>KOG4271|consensus
Probab=99.81 E-value=1.1e-20 Score=178.83 Aligned_cols=155 Identities=27% Similarity=0.349 Sum_probs=140.3
Q ss_pred cchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHH
Q psy3002 32 VLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVAS 110 (240)
Q Consensus 32 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~ 110 (240)
.+.......+.+| ++++|+. ++|..|+.+||+||++|+.++.+.++++|.++...++...+ ..+|+||+
T Consensus 921 ~l~~~~t~~k~ip~~~ekc~s-------fiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d---~~v~~vag 990 (1100)
T KOG4271|consen 921 PLQDAVTSEKPIPIFLEKCKS-------FIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMD---TTVNVVAG 990 (1100)
T ss_pred cccccccCCcccchHHHHHHH-------HHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccc---cccccccC
Confidence 3334445666777 6889997 78999999999999999999999999999997766665542 57999999
Q ss_pred HHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHh
Q psy3002 111 LLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIV 190 (240)
Q Consensus 111 lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~v 190 (240)
.+|.||.+||+||+|+++...+.++....|..+++..++..+..+|+.|+.+++|++.||.+|+....+|.||..||++|
T Consensus 991 Alksffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~ 1070 (1100)
T KOG4271|consen 991 ALKSFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSIC 1070 (1100)
T ss_pred cchhhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhhhcCchHHHHHHHHHHHHhhhccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccc
Q psy3002 191 WAPNLL 196 (240)
Q Consensus 191 faP~l~ 196 (240)
|++.|+
T Consensus 1071 ~~~~~~ 1076 (1100)
T KOG4271|consen 1071 FPTLLM 1076 (1100)
T ss_pred ccchHH
Confidence 998877
No 53
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.78 E-value=4e-18 Score=141.43 Aligned_cols=153 Identities=20% Similarity=0.239 Sum_probs=125.7
Q ss_pred CcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCcccc--------CHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHh-
Q psy3002 67 DQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQ--------DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQ- 137 (240)
Q Consensus 67 ~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~--------d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~- 137 (240)
.-|+||.++....+...++-++...+....+.....+ --.+||+++++||++|||||+|..+|+.|..++.
T Consensus 59 vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~l 138 (235)
T cd04405 59 VVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHDMLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILEL 138 (235)
T ss_pred hhcccccccCcHHHHHHHHHHHhCCcccccccccccccccccccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHH
Confidence 3689999999999999999888775432111111111 1238999999999999999999999999988887
Q ss_pred --cCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCC-------CCCCCChhhHHHhhccccccCCccccchhhh
Q psy3002 138 --QSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHG-------DKTGMTARNVAIVWAPNLLRCKELEYGGVAA 208 (240)
Q Consensus 138 --~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s-------~~NkM~~~nLa~vfaP~l~~~~~~~~~~~~~ 208 (240)
....+..+++++.++..||++||..|+.|+.||.+++.++ ..|+| |++..|+|+++++++-+
T Consensus 139 l~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~~va~~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~l~------ 209 (235)
T cd04405 139 LGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAAKNDMPRLHKEIENRM---LVKQTFSRAILCSKDLD------ 209 (235)
T ss_pred hcCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCccccccccchHH---HHHHHhhhHhcCccccC------
Confidence 4457899999999999999999999999999999999994 25666 99999999999998532
Q ss_pred hhhhhhHHHHHHHHHhcchhcCC
Q psy3002 209 LQGVGVQAVVTEFLVVYYAAIFD 231 (240)
Q Consensus 209 ~~~~~~~~~vv~~LI~~~~~iF~ 231 (240)
......+|.|||+|+.+||.
T Consensus 210 ---~~~~~~LV~Fmmd~~~~ifk 229 (235)
T cd04405 210 ---EGLADLLVLFLMDHHQDIFK 229 (235)
T ss_pred ---HHHHHHHHHHHHHcchhhhc
Confidence 13367899999999999996
No 54
>KOG4724|consensus
Probab=99.77 E-value=1.1e-19 Score=167.28 Aligned_cols=171 Identities=14% Similarity=0.074 Sum_probs=150.4
Q ss_pred ccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcC
Q psy3002 60 PEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQS 139 (240)
Q Consensus 60 ~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~ 139 (240)
....|--++||||..++...+++|++.++.|.++.+.. ..+|+.|.++|.|+|..|.-+++..+|+.|.......
T Consensus 107 lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~~-----~~i~v~a~v~kdflr~ip~~~lSsdl~~hw~~~~~~~ 181 (741)
T KOG4724|consen 107 LCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLKS-----GEIVVDAAVDKDFLRTIPQLTLSSDLNSHWQLQGPEN 181 (741)
T ss_pred HhhcCcccHHHHHHHHHHHHHHHHHHHhcccccccccc-----cceEEeehhhhchhhhchhhhhccccHHHHhhccccc
Confidence 45568899999999999999999999999999888765 4899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCccccchhhhhhhhhhHHHHH
Q psy3002 140 KLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVT 219 (240)
Q Consensus 140 ~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv 219 (240)
+.++++..++++...||..|..+|++|...| .|..++++|.|+..|||+|++|+.+++...... ...-.-.+..--.+
T Consensus 182 ~~e~~i~~i~r~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv~p~~l~~~~~~s~-e~~k~ln~kv~~l~ 259 (741)
T KOG4724|consen 182 VYEAIISEIERQGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCVNPIKLKVLTRTSS-EFGKGLNGKVPPLP 259 (741)
T ss_pred cHHHHHHHHHHHHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHhcchhcccccccCh-hhhccccCCCCCce
Confidence 9999999999999999999999999999999 999999999999999999999999998764321 11112223345578
Q ss_pred HHHHhcchhcCCCCCCCC
Q psy3002 220 EFLVVYYAAIFDKKNPRA 237 (240)
Q Consensus 220 ~~LI~~~~~iF~~~~~~~ 237 (240)
+|+|+|+-.||+++.+.+
T Consensus 260 ~flI~nclrifGe~i~~~ 277 (741)
T KOG4724|consen 260 IFLIVNCLRIFGEDIEGI 277 (741)
T ss_pred eeehhhhHHhhcccccce
Confidence 999999999999987653
No 55
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.74 E-value=2.6e-17 Score=135.06 Aligned_cols=140 Identities=18% Similarity=0.186 Sum_probs=116.9
Q ss_pred ccCCCCCCcce---eeecCCcHHHHHH-HHHhcCCCCCCCCC----CCccccCHHHHHHHHHHHHhhCCCCCCCh-hhHH
Q psy3002 60 PEECPLGDQEV---SLISCPSLPLCIT-RHTFDEDRIPDLYT----DDTIVQDIHSVASLLKMYFRELPNPLCTY-QLYH 130 (240)
Q Consensus 60 ~e~~gl~~eGI---fR~~g~~~~i~~L-~~~~d~~~~~~~~~----~~~~~~d~~~va~lLK~flr~Lp~pLi~~-~~~~ 130 (240)
++.+|+++++| ||.+++...++.+ +..|+.+....... .+....|||+++++||.++|.||.++++. +.|.
T Consensus 17 Lk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~~~v~~~~~Y~ 96 (198)
T cd04401 17 LKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPGSKVIWWEVYE 96 (198)
T ss_pred HHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCCCccCCHHHHH
Confidence 56789999999 9999999999887 77888664221111 01234899999999999999999999999 9999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCcc
Q psy3002 131 SFVGAVQQSKLQDQLTQMRETVEKL--PPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKEL 201 (240)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~l~~L--p~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~ 201 (240)
.|...-+..+-. ..+++.++..+ |+.|..++..++.+|.+|+.|+..|+|+..+|+.+|||.+|..++.
T Consensus 97 ~F~~~E~~~~~p--~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~~~ 167 (198)
T cd04401 97 EFKARERRSNYP--ADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKPTG 167 (198)
T ss_pred HHHHHHHhcCCc--HHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCCCc
Confidence 999865432222 33888888887 8899999999999999999999999999999999999999999874
No 56
>KOG4370|consensus
Probab=99.31 E-value=2.2e-12 Score=114.16 Aligned_cols=157 Identities=18% Similarity=0.148 Sum_probs=123.1
Q ss_pred cccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCC-----------------C----------------CC---Cccc
Q psy3002 59 MPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDL-----------------Y----------------TD---DTIV 102 (240)
Q Consensus 59 ~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~-----------------~----------------~~---~~~~ 102 (240)
+.+++|+-+||++|.+...++.+++++.-..+..... . .. ....
T Consensus 81 ~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~ 160 (514)
T KOG4370|consen 81 FVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVVPIEFPSVARSCIREGLATTTQ 160 (514)
T ss_pred hhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccccccchHHHHHHhhccccchhh
Confidence 4778899999999998887665554432222110000 0 00 1123
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCC
Q psy3002 103 QDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGM 182 (240)
Q Consensus 103 ~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM 182 (240)
..|.+||++||.|+|+||+||++.++...|..++.........+.++.++..||..||.++.++.-|+-.|.+..-.|||
T Consensus 161 l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~llk~Lp~cNyll~swl~lH~d~vi~~e~~~Kl 240 (514)
T KOG4370|consen 161 LTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLLKILPKCNYLLYSWLNLHKDKVIEEEYCLKL 240 (514)
T ss_pred cCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhc
Confidence 67899999999999999999999999999999998777788889999999999999999999999999999998889999
Q ss_pred ChhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCC
Q psy3002 183 TARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDK 232 (240)
Q Consensus 183 ~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~ 232 (240)
+..||+++.+|+.=- ...++..|..|...||.+
T Consensus 241 n~q~i~i~lspt~q~-----------------s~r~l~al~~h~q~lf~~ 273 (514)
T KOG4370|consen 241 NKQQIFINLSPTEQE-----------------SKRGLQALGLHLQTLFEM 273 (514)
T ss_pred chhheeeecchHHHH-----------------HHHHHHHHHHHHHHHHhh
Confidence 999999998876532 244566677777777764
No 57
>KOG3565|consensus
Probab=99.27 E-value=1.9e-12 Score=122.94 Aligned_cols=139 Identities=21% Similarity=0.250 Sum_probs=123.0
Q ss_pred cccCCCCCCcceee-ecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCC-CCChhhHHHHHHHH
Q psy3002 59 MPEECPLGDQEVSL-ISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNP-LCTYQLYHSFVGAV 136 (240)
Q Consensus 59 ~~e~~gl~~eGIfR-~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~p-Li~~~~~~~~~~~~ 136 (240)
+.+.+|+..+|||| ++|....+...+.++.++........ ..+... |+++|.|+|.+.+| .|+.+.+..+..+.
T Consensus 228 l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~---~~~~dS-a~vlk~~~~~le~P~~f~~e~~~~~~~~~ 303 (640)
T KOG3565|consen 228 LEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLN---DPDLDS-AGVLKLYFRGLEEPADFPFEDFGQPHDCA 303 (640)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcc---CcchhH-HHHHHHHHccCCCcccCccccccchhhhh
Confidence 57889999999999 89999999999999999843322222 145555 99999999999999 99999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCcc
Q psy3002 137 QQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKEL 201 (240)
Q Consensus 137 ~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~ 201 (240)
...+.-++...++.++..+|..+..++.++..|+...+..+..|.|+..|+|+||||++...++.
T Consensus 304 ~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~e~ 368 (640)
T KOG3565|consen 304 ARDNLLSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVPEG 368 (640)
T ss_pred hhcCchhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCccc
Confidence 87777777788999999999999999999999999999999999999999999999999877653
No 58
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.36 E-value=4.5e-06 Score=76.16 Aligned_cols=141 Identities=18% Similarity=0.237 Sum_probs=105.7
Q ss_pred ccCCCCCCcceee---ecCCcHHHHH-HHHHhcCCCCCCCCC-----CCccccCHHHHHHHHHHHHhhCCCCCCChhhHH
Q psy3002 60 PEECPLGDQEVSL---ISCPSLPLCI-TRHTFDEDRIPDLYT-----DDTIVQDIHSVASLLKMYFRELPNPLCTYQLYH 130 (240)
Q Consensus 60 ~e~~gl~~eGIfR---~~g~~~~i~~-L~~~~d~~~~~~~~~-----~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~ 130 (240)
+..+|+++++||- -.-+...++. |+..|+.+....... .+....++|+++++||-.+..||..+++++.|.
T Consensus 19 lK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RLp~gvVgW~~Y~ 98 (420)
T PF08101_consen 19 LKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRLPGGVVGWDSYE 98 (420)
T ss_pred HHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHcCCCccccHHHH
Confidence 5578999999974 4445556655 455666655431111 112348999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH-hcCC-ccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCccc
Q psy3002 131 SFVGAVQQSKLQDQLTQMRETV-EKLP-PPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202 (240)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~l-~~Lp-~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~ 202 (240)
.|...-+..+- ...++..++ ..|| +.+..++..++.+|..|+.|+..|+|+..-|+-.+|+-.|......
T Consensus 99 ~Fk~~E~~~~y--p~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~~~~~ 170 (420)
T PF08101_consen 99 EFKRREREAGY--PRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGHPDFG 170 (420)
T ss_pred HHHHHHhhcCC--ChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCCCCcc
Confidence 99876543222 234555555 5564 5667899999999999999999999999999999999999887643
No 59
>KOG4724|consensus
Probab=97.69 E-value=2.5e-05 Score=73.47 Aligned_cols=136 Identities=13% Similarity=0.118 Sum_probs=107.2
Q ss_pred ccCCCCCCcceeeecCCcHHH-----HHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHH
Q psy3002 60 PEECPLGDQEVSLISCPSLPL-----CITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVG 134 (240)
Q Consensus 60 ~e~~gl~~eGIfR~~g~~~~i-----~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~ 134 (240)
++..+..++++||..-...-+ ...-+.-+.+..++... ..+|.+++++|.|+|++|-.++..+.+.++.+
T Consensus 442 l~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~s-----spv~taasv~KdfnRKtpRgi~sr~ihke~~e 516 (741)
T KOG4724|consen 442 LKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPS-----SPVHTAASVHKDFNRKTPRGIPSREIHKESME 516 (741)
T ss_pred HHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCC-----CCchHHHHHHHHhhhhcCCCccchHHHHHhhh
Confidence 556788999999984332222 22223333344444432 58999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHH--------HHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCc
Q psy3002 135 AVQQSKLQDQLTQMRE--------TVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200 (240)
Q Consensus 135 ~~~~~~~~~~~~~l~~--------~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~ 200 (240)
+....+++++.++++. .....|..+.........-...+..+++.+.||..|++.|..|+......
T Consensus 517 a~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse~~s~dsSn~~~csrpn~~tvd~ 590 (741)
T KOG4724|consen 517 ATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSEETSNDSSNPGFCSRPNALTVDD 590 (741)
T ss_pred hhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceecccccccccccccccCCCCCccccchhh
Confidence 9888888889999998 77888988887777777777778899999999999999999988887654
No 60
>KOG1453|consensus
Probab=97.44 E-value=0.00011 Score=73.65 Aligned_cols=142 Identities=20% Similarity=0.240 Sum_probs=112.0
Q ss_pred cccCCCCCCcceeeecCCcHHHHHHHHHhcCCCC-CCCCCCCcc-ccCHHHHHHHHHHHHhhC--CCCCCChhhHHHHH-
Q psy3002 59 MPEECPLGDQEVSLISCPSLPLCITRHTFDEDRI-PDLYTDDTI-VQDIHSVASLLKMYFREL--PNPLCTYQLYHSFV- 133 (240)
Q Consensus 59 ~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~-~~~~~~~~~-~~d~~~va~lLK~flr~L--p~pLi~~~~~~~~~- 133 (240)
.....|....|+||.+|....++..+..+|.... ..-...... ..++...+|.++.++|.+ |.+....+.|..+.
T Consensus 491 e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~sg~~~~~~r~~~~P~~c~~c~~~~~~~~ 570 (918)
T KOG1453|consen 491 ESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNLHSGALKHYLRSLRKPAPCRTCETYSWFME 570 (918)
T ss_pred ccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchhccCcchhhhhcccCCcccccccccchhhh
Confidence 3556789999999999999999999999997763 111111111 345667777999999999 99988888888887
Q ss_pred ---------------HHHhcCCHHHHH-------HHHHHHHh----cCCccHHHHHHHHHHHHHHhhcCCCCC-CCCh-h
Q psy3002 134 ---------------GAVQQSKLQDQL-------TQMRETVE----KLPPPHYRTLEYLIGHLSRVAAHGDKT-GMTA-R 185 (240)
Q Consensus 134 ---------------~~~~~~~~~~~~-------~~l~~~l~----~Lp~~n~~~L~~l~~~L~~V~~~s~~N-kM~~-~ 185 (240)
.........+++ ..+..+.. .+|.....++.++..|+.++.....+| -|+. .
T Consensus 571 ~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e 650 (918)
T KOG1453|consen 571 LECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVE 650 (918)
T ss_pred cccceeeeeccccchhhccccCccccccccccccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHH
Confidence 333334445556 78888888 999999999999999999999988888 7887 8
Q ss_pred hHHHhhcc----ccccCCc
Q psy3002 186 NVAIVWAP----NLLRCKE 200 (240)
Q Consensus 186 nLa~vfaP----~l~~~~~ 200 (240)
||+.+|++ +.+...+
T Consensus 651 ~l~~~~e~~~~~v~l~~~d 669 (918)
T KOG1453|consen 651 NLSAVFENGDALVLLSTPD 669 (918)
T ss_pred HHHHHhcCCccceecCCCC
Confidence 99999999 5665554
No 61
>KOG1449|consensus
Probab=97.23 E-value=3.5e-05 Score=71.49 Aligned_cols=192 Identities=28% Similarity=0.406 Sum_probs=132.9
Q ss_pred HHHHHHHHHHhhcccccCCCcchhhh-ccccccc--cccccccccccccccccCCC-CCCcceeeecCCcHHHHHHHHHh
Q psy3002 12 LTKYLERLSTIAGSLINCGPVLSWME-LDNRGRR--LLGKCFWNSLSHFFMPEECP-LGDQEVSLISCPSLPLCITRHTF 87 (240)
Q Consensus 12 ~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~l~~~~~~e~~g-l~~eGIfR~~g~~~~i~~L~~~~ 87 (240)
.-+|++.|+....+-..+|+.+..+. ...++.| .+|+|+. +.++ +...++ .+..|.|++. +
T Consensus 193 ~akymeTL~sl~~~~~~~gl~ltr~~~~~G~~lpas~~g~~C~-s~~~--~~q~~ei~~~~g~l~a~------------~ 257 (670)
T KOG1449|consen 193 LAKYMETLSSLVDSNLNCGLVLTRMEVGLGRGLPASEWGRGCV-SHHA--VTQHREILDGNGVLSAV------------E 257 (670)
T ss_pred HHHHHHHHhcccccCccccceecceeeccccccchhhhccchh-cccc--chhccCCcccCcceecc------------c
Confidence 67899999999999999999998777 4666777 4788773 2222 112222 3444666654 4
Q ss_pred cCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHh-cCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q psy3002 88 DEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQ-QSKLQDQLTQMRETVEKLPPPHYRTLEYL 166 (240)
Q Consensus 88 d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l 166 (240)
|.+..++...+ .-..|+.++..+++.|.+.+|.|+.. ..+. .....+.+...+-.....++.|+.+-..|
T Consensus 258 D~gae~d~~af-~~p~di~v~S~d~dp~s~Q~~pp~~~--------~~~~k~Ds~s~sv~~~~~~~~~~se~~~r~a~~l 328 (670)
T KOG1449|consen 258 DEGAEVDGEAF-RWPSDIVVESWDMDPYSRQLPPPYPK--------EAFEKEDSLSESVESLRFSLETMSEAHYRTAKFL 328 (670)
T ss_pred ccccccccccc-CCccceeeeccccChhhhhcCCCCcc--------cccccccCcccceeeeccccccCCcccchHhhhh
Confidence 45544443322 11368888999999999999999544 1222 22234555666667788999999999999
Q ss_pred HHHHHHhhcCCCCCCCChhhHHHhhccccccCCccc-cchhhhhhhhhhHHHHHHHHHhcchhcCCCCC
Q psy3002 167 IGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE-YGGVAALQGVGVQAVVTEFLVVYYAAIFDKKN 234 (240)
Q Consensus 167 ~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~-~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~ 234 (240)
..||.+...-. .+++|++.|+++|++..- ......+...+.+..+..+.|++....|.++.
T Consensus 329 se~ft~~~~~~-------~s~~I~~~~~~~r~pptL~~~~~h~~~~~~~~~~~~~~~~e~s~~~~~~~i 390 (670)
T KOG1449|consen 329 SEHFTRLCKSK-------KSLAIVWSPNLFRPPPTLNGADTHLLSGLNVHTAICDFFIENSESLFVNDI 390 (670)
T ss_pred chhhhhhcccc-------ccceeecCCCCCCCCCCCCchhhhhcccCCcceeecccchhhhhhhhhccc
Confidence 99999888732 899999999999998621 11222234455667777889999999998765
No 62
>KOG1449|consensus
Probab=96.88 E-value=0.00026 Score=65.85 Aligned_cols=69 Identities=45% Similarity=0.582 Sum_probs=58.0
Q ss_pred HHHHHHhhcCCCCCCCChhhHHHhhccccccCCccccc------hhhhhhhhhhHHHHHHHHHhcchhcCCCCCC
Q psy3002 167 IGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYG------GVAALQGVGVQAVVTEFLVVYYAAIFDKKNP 235 (240)
Q Consensus 167 ~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~------~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~~ 235 (240)
++||..|+.++.+..|-+.|||.+|||+|+|.+..+.. ....+..++.+..|+++...|.|.+|....+
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~lcs~~~GdaAf~avq~qsvV~EfilnhvDvlF~~~a~ 75 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESSLCSHLWGDAAFSAVQAQSVVSEFILNHVDVLFLPTAG 75 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHhhhccccccHHHHHHHhhhhhhhhcccccceecCCcCC
Confidence 36899999999999999999999999999998764321 3456677888899999999999999997553
No 63
>KOG4271|consensus
Probab=96.20 E-value=0.0066 Score=59.62 Aligned_cols=175 Identities=12% Similarity=0.075 Sum_probs=116.6
Q ss_pred cccccCCCCCCcc---eeeecC-CcHHHHHHHHHhcCCCCCCCCCCCccccCHH--HHHHHHH--HHHhhCCCCCCChhh
Q psy3002 57 FFMPEECPLGDQE---VSLISC-PSLPLCITRHTFDEDRIPDLYTDDTIVQDIH--SVASLLK--MYFRELPNPLCTYQL 128 (240)
Q Consensus 57 ~~~~e~~gl~~eG---IfR~~g-~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~--~va~lLK--~flr~Lp~pLi~~~~ 128 (240)
+.+++..|+..|| |-|.+. +...|+--...|+.++...+.-.+ ..+|| .|...++ .-||.++..+.|...
T Consensus 379 L~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~--~~~ph~s~v~e~Ie~~~~lr~~~~~~~~~~~ 456 (1100)
T KOG4271|consen 379 LVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNS--FQQPHLSYVGESIEKSHSLRQQGQQIAPKLQ 456 (1100)
T ss_pred hhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhh--hcCcchhHHHhhhhhhhhhhhcccccCCccc
Confidence 5568899999999 888888 555565544445422222221111 14788 5777777 778888888888877
Q ss_pred HHHHHHH--HhcCCHHHHHHHHHHHH-hc--CCccHHH----HHHHHHHHHHHhhcCCCCCCCChh-hHHHhhccc-ccc
Q psy3002 129 YHSFVGA--VQQSKLQDQLTQMRETV-EK--LPPPHYR----TLEYLIGHLSRVAAHGDKTGMTAR-NVAIVWAPN-LLR 197 (240)
Q Consensus 129 ~~~~~~~--~~~~~~~~~~~~l~~~l-~~--Lp~~n~~----~L~~l~~~L~~V~~~s~~NkM~~~-nLa~vfaP~-l~~ 197 (240)
...+..+ +...-.++|+.++...+ .. .|.+|+. ++.+|+..+..++.++..|.|+.. .-+.|.+|. +++
T Consensus 457 C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s~aCkS~~llL~ 536 (1100)
T KOG4271|consen 457 CVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLASAACKSPHLLLR 536 (1100)
T ss_pred cccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHHHHhcChHHHHh
Confidence 7776666 44444466777777555 44 5888887 888888888999999999999999 899999994 666
Q ss_pred CCcc-------c--c--chhhhhh----------hhh-hHHHHHHHHHhcchhcCCCC
Q psy3002 198 CKEL-------E--Y--GGVAALQ----------GVG-VQAVVTEFLVVYYAAIFDKK 233 (240)
Q Consensus 198 ~~~~-------~--~--~~~~~~~----------~~~-~~~~vv~~LI~~~~~iF~~~ 233 (240)
.+-. . . ..+..+. ... .++.+|..+++.|..||.+.
T Consensus 537 ~pI~~~krrie~~~f~v~~de~vh~~~~~~sA~~~An~~aQ~iI~~~l~D~~si~~~~ 594 (1100)
T KOG4271|consen 537 LPIGAGKRRIELSSFDVRKDELVHGYIVLYSAKRKANMEAQDIIPVALTDYASIFLDN 594 (1100)
T ss_pred cccccccceecccccccccchhHHHHHHHHHHHhhccchHhhhhhHHhhcchhhhccc
Confidence 3211 0 0 0011111 111 35678889999999999764
No 64
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=96.20 E-value=0.0049 Score=45.47 Aligned_cols=36 Identities=56% Similarity=1.128 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccccCCCcchhhhc
Q psy3002 3 DQQIYMKRLLTKYLERLSTIAGSLINCGPVLSWMEL 38 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 38 (240)
+|++-.++++..|++++|.++.+.++|||++..+++
T Consensus 79 ~~~~~~~~~l~~YL~RlS~Ia~~~inCGPvLtWlei 114 (114)
T cd07278 79 REQQNLHQVLSDYLKRLSSIAGNLLNCGPVLNWLEL 114 (114)
T ss_pred chHHHHHHHHHHHHHHHHHHhcCcccchhcceeeeC
Confidence 467778899999999999999999999999998764
No 65
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs
Probab=96.19 E-value=0.0051 Score=45.21 Aligned_cols=36 Identities=50% Similarity=0.981 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccccCCCcchhhhc
Q psy3002 3 DQQIYMKRLLTKYLERLSTIAGSLINCGPVLSWMEL 38 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 38 (240)
++++-.+.++..|+++++.++.+.++|||++..+++
T Consensus 78 ~~~~~~~~~l~~YL~RlS~Ia~~~inCGPVLtWmeI 113 (113)
T cd07299 78 DRLQILTPLLSEYLNRLTGIVDSNLNCGPVLTWMEI 113 (113)
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCccccccceeeeC
Confidence 566778899999999999999999999999988764
No 66
>KOG4370|consensus
Probab=52.26 E-value=35 Score=31.58 Aligned_cols=37 Identities=24% Similarity=0.520 Sum_probs=31.3
Q ss_pred ccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHH
Q psy3002 100 TIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAV 136 (240)
Q Consensus 100 ~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~ 136 (240)
....|+|+.++..|+|++..|+|++|-++-.-+..|.
T Consensus 115 ~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~Ci 151 (514)
T KOG4370|consen 115 MIFADAHDAAGLIKRFLRQIPEPVVPIEFPSVARSCI 151 (514)
T ss_pred hhHHHHHHHHhHHHHhhhccCCccccccchHHHHHHh
Confidence 3458999999999999999999999987766666665
No 67
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=38.06 E-value=66 Score=21.89 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhh
Q psy3002 145 LTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVW 191 (240)
Q Consensus 145 ~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vf 191 (240)
+..++.....|++..+.+..|++.+...+.. |++..||.-.
T Consensus 4 ~~~i~~~~~~ls~~e~~Ia~yil~~~~~~~~------~si~elA~~~ 44 (77)
T PF01418_consen 4 LEKIRSQYNSLSPTEKKIADYILENPDEIAF------MSISELAEKA 44 (77)
T ss_dssp HHHHHHHGGGS-HHHHHHHHHHHH-HHHHCT--------HHHHHHHC
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHhCHHHHHH------ccHHHHHHHc
Confidence 3556677788999999999999999999876 7888888643
No 68
>COG4835 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.86 E-value=37 Score=25.32 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=31.1
Q ss_pred eeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhC
Q psy3002 70 VSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFREL 119 (240)
Q Consensus 70 IfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~L 119 (240)
=||++|..+++..++..+-... ..+.. .++..+|.=|-.+++.|
T Consensus 63 nfvisG~ISqi~~i~~~iv~e~-seleq-----eeve~La~Plld~lkRL 106 (124)
T COG4835 63 NFVISGRISQINQIKDRIVKEP-SELEQ-----EEVEGLAAPLLDMLKRL 106 (124)
T ss_pred eeEEeeehHHHHHHHhHhccCH-HHhhH-----HHHHHHHHHHHHHHHHh
Confidence 4899999999999999885332 22222 57777777676666655
No 69
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=28.75 E-value=93 Score=30.34 Aligned_cols=64 Identities=14% Similarity=0.287 Sum_probs=44.6
Q ss_pred HHHHHhhCCCCCCChhhHHH------HHHHHhc---CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc
Q psy3002 112 LKMYFRELPNPLCTYQLYHS------FVGAVQQ---SKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAA 175 (240)
Q Consensus 112 LK~flr~Lp~pLi~~~~~~~------~~~~~~~---~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~ 175 (240)
++.|++..|--|+..+...- ..+..+. .....-...+++....|++..+.+..|++.+...+..
T Consensus 302 ~~~~~~~ipv~~i~~~~~~l~Gaa~~~~~~~~~~~~~~~~~l~~~I~~~~~~Lt~~E~~IA~yIl~n~~~v~~ 374 (638)
T PRK14101 302 FEAYLANIPTYLITAEYPAFLGVSAILAEQLSNRTGGASSAVFERIRQMRDALTPAERRVADLALNHPRSIIN 374 (638)
T ss_pred hHHHHhcCCEEEEeCCChhHHHHHHHHHHHhccccCCchHHHHHHHHHHHhhcCHHHHHHHHHHHhCHHHHHh
Confidence 56677888877777663221 1122221 2235567788888899999999999999999988765
No 70
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=27.94 E-value=2.2e+02 Score=20.07 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=36.6
Q ss_pred eeec-CCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhC---------------CCCCCChhhHHHHHH
Q psy3002 71 SLIS-CPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFREL---------------PNPLCTYQLYHSFVG 134 (240)
Q Consensus 71 fR~~-g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~L---------------p~pLi~~~~~~~~~~ 134 (240)
||.+ =+...++++.......... . .=+-.++++-|.|..+| ..||-|..+.+.|..
T Consensus 12 ~Rra~f~k~~iKr~~~~~~~~~v~----~----~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~rr 83 (85)
T cd08048 12 FRRSSFPKAAIKRLIQSVTGQSVS----Q----NVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYRR 83 (85)
T ss_pred HHHhhccHHHHHHHHHHHcCCCCC----c----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHHH
Confidence 4433 4555677776655432111 1 23678999999999998 788888877766643
No 71
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=27.84 E-value=2.1e+02 Score=20.92 Aligned_cols=44 Identities=11% Similarity=0.207 Sum_probs=34.9
Q ss_pred hhHHHHHHHHhcC--CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q psy3002 127 QLYHSFVGAVQQS--KLQDQLTQMRETVEKLPPPHYRTLEYLIGHLS 171 (240)
Q Consensus 127 ~~~~~~~~~~~~~--~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~ 171 (240)
..+..+.++.... ...++-..+..+...+|+. +.+|.++...+.
T Consensus 65 ~a~~~l~~I~~n~~lT~~q~~~~I~~l~~~~~~e-~~~l~~i~~~~~ 110 (113)
T PF02520_consen 65 SAFAKLSAILDNKSLTRQQQQEAIDALRKQYPEE-VDTLFFIRKEIE 110 (113)
T ss_pred HHHHHHHHHHcCcccCHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHh
Confidence 6777777777643 3577889999999999999 999988887653
No 72
>COG2747 FlgM Negative regulator of flagellin synthesis (anti-sigma28 factor) [Transcription / Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.30 E-value=1.1e+02 Score=22.21 Aligned_cols=34 Identities=9% Similarity=0.121 Sum_probs=27.6
Q ss_pred CcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhh
Q psy3002 76 PSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRE 118 (240)
Q Consensus 76 ~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~ 118 (240)
+..+|++|++++..|.+. -|..-||.-|-.|+.+
T Consensus 59 ~~~kVeeiK~aI~~G~yk---------vD~~kiAd~ll~f~~~ 92 (93)
T COG2747 59 REEKVEELKQAIENGEYK---------VDTEKIADKLLDFAKQ 92 (93)
T ss_pred hHHHHHHHHHHHHcCCee---------ecHHHHHHHHHHHHhc
Confidence 567899999999999864 4788888888777764
No 73
>smart00096 UTG Uteroglobin.
Probab=26.77 E-value=1.6e+02 Score=19.99 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=31.6
Q ss_pred ChhhHHHHHHHHhc-CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc
Q psy3002 125 TYQLYHSFVGAVQQ-SKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAA 175 (240)
Q Consensus 125 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~ 175 (240)
+.+.|..-+..++. .+--+....+++++..||...+..+-. ++.+|..
T Consensus 17 t~~~Y~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~---ll~kI~~ 65 (69)
T smart00096 17 TPSSYEASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILK---LTEKIYT 65 (69)
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH---HHHHHHc
Confidence 45566666666652 223455678899999999999987544 4445544
No 74
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=26.04 E-value=83 Score=28.69 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=20.0
Q ss_pred hcCCccHHHHHHHHHHHHHHhhc
Q psy3002 153 EKLPPPHYRTLEYLIGHLSRVAA 175 (240)
Q Consensus 153 ~~Lp~~n~~~L~~l~~~L~~V~~ 175 (240)
..+|...+.+|++|+++++++..
T Consensus 67 ~~i~~~r~~llK~lLk~l~~~~~ 89 (379)
T PF06025_consen 67 YSISYQRQQLLKSLLKFLSHAMQ 89 (379)
T ss_pred cccCHHHHHHHHHHHHHHHHHhc
Confidence 35778888999999999999998
No 75
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=25.81 E-value=2.2e+02 Score=19.42 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=36.8
Q ss_pred HHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHh-cCCccHH
Q psy3002 111 LLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVE-KLPPPHY 160 (240)
Q Consensus 111 lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~Lp~~n~ 160 (240)
+||.+++.|-..--+.+.-.+|.+.....+..+-...=++++. .+|....
T Consensus 1 ~LK~ii~~Lh~G~~~e~vk~~F~~~~~~Vs~~EI~~~Eq~Li~eG~~~eei 51 (71)
T PF04282_consen 1 ILKEIIKRLHEGEDPEEVKEEFKKLFSDVSASEISAAEQELIQEGMPVEEI 51 (71)
T ss_pred CHHHHHHHHhCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 4788888888887778888888888887777776666666664 3555443
No 76
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=25.72 E-value=1.9e+02 Score=19.16 Aligned_cols=53 Identities=9% Similarity=0.197 Sum_probs=31.2
Q ss_pred HHHHHHHHhhCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHhcCCccHHHHHHHHH
Q psy3002 109 ASLLKMYFRELPNPLCTYQLYHSFVGAVQQS-KLQDQLTQMRETVEKLPPPHYRTLEYLI 167 (240)
Q Consensus 109 a~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~Lp~~n~~~L~~l~ 167 (240)
-..+..||.. +.+.|...++-+... ...+....+++.+..|+..++..+..++
T Consensus 5 ~~~v~~~l~~------s~~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l 58 (67)
T PF01099_consen 5 EDVVTKFLFG------SPEEYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLL 58 (67)
T ss_dssp HHHHHHHHHS-------HHHHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred HHHHHHHhcC------CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445555554 566676666655532 2345567888999999988877655444
No 77
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=25.15 E-value=2.5e+02 Score=19.75 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCC
Q psy3002 129 YHSFVGAVQQSK---LQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHG 177 (240)
Q Consensus 129 ~~~~~~~~~~~~---~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s 177 (240)
|+++...++... +.-+-+.+.++|.+-|+.++.-|+.+-.|+..+-..+
T Consensus 6 FD~L~~LA~~dPe~fe~lr~~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~ 57 (83)
T PF11333_consen 6 FDELKELAQNDPEAFEQLRQELIEEMIESAPEEMQPRLRALQFHIDMQRSRC 57 (83)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc
Confidence 466766665322 1345667778999999999999999999999888853
No 78
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=22.67 E-value=1.2e+02 Score=19.29 Aligned_cols=31 Identities=3% Similarity=0.073 Sum_probs=22.8
Q ss_pred CCCChhhHHHHHHHHhcCCHHHHHHHHHHHH
Q psy3002 122 PLCTYQLYHSFVGAVQQSKLQDQLTQMRETV 152 (240)
Q Consensus 122 pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l 152 (240)
|+||.++-+.+++.......+.|+..+-.+.
T Consensus 1 P~IPD~v~~~yL~~~G~~~~D~rv~RLvSLa 31 (51)
T PF03540_consen 1 PTIPDEVTDYYLERSGFQTSDPRVKRLVSLA 31 (51)
T ss_pred CCCCHHHHHHHHHHCCCCCCCHhHHHHHHHH
Confidence 7899999999998888665666665555443
No 79
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=21.33 E-value=1.2e+02 Score=20.65 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=31.5
Q ss_pred CcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCC
Q psy3002 67 DQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPN 121 (240)
Q Consensus 67 ~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~ 121 (240)
.+|-|+++|+. .++.+.+.++-. +.. .+.++++|++-..+..+|.
T Consensus 4 ~~~~~~v~G~~-~l~~l~~~~~~~----l~~-----~~~~Tl~G~i~~~l~~iP~ 48 (81)
T PF03471_consen 4 DDGTYIVSGST-PLDDLNELLGLD----LPE-----EDYDTLGGLILEQLGRIPE 48 (81)
T ss_dssp TTSEEEEETTS-BHHHHHHHHTS-----TTT-----TTTSBHHHHHHHHHTSS--
T ss_pred cCCEEEEEecC-CHHHHHHHHCcC----CCc-----cchhhHHHHHHHHcCCCCC
Confidence 46789998875 466678888664 221 2566999999999999886
No 80
>KOG1168|consensus
Probab=20.61 E-value=1.9e+02 Score=25.44 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhhcccccCC---CcchhhhccccccccccccccccccccccccCCCCCCcceeeecCCcHHHHHHH
Q psy3002 8 MKRLLTKYLERLSTIAGSLINCG---PVLSWMELDNRGRRLLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITR 84 (240)
Q Consensus 8 ~~~~~~~~~~~~~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~ 84 (240)
+|.-|+.|+|+--...+.....+ .++...+-.++.-.+.-.. .++|+.+|.++.+ .+..+|..+.
T Consensus 276 LKPILqaWLEeAE~a~keK~~~pd~~~l~~~~ekKRKRTSIAAPE-KRsLEayFavQPR-----------PS~EkIAaIA 343 (385)
T KOG1168|consen 276 LKPILQAWLEEAEAAMKEKDTKPDINELLPGGEKKRKRTSIAAPE-KRSLEAYFAVQPR-----------PSGEKIAAIA 343 (385)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCchhhccCccccccccccccCcc-cccHHHHhccCCC-----------CchhHHHHHH
Confidence 57889999999887777666555 4444444333333222111 2566676654443 4566788888
Q ss_pred HHhcCCC
Q psy3002 85 HTFDEDR 91 (240)
Q Consensus 85 ~~~d~~~ 91 (240)
+++|-..
T Consensus 344 ekLDLKK 350 (385)
T KOG1168|consen 344 EKLDLKK 350 (385)
T ss_pred Hhhhhhh
Confidence 8887554
Done!