Query psy3002
Match_columns 240
No_of_seqs 221 out of 1490
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 23:00:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3byi_A RHO GTPase activating p 100.0 5.1E-45 1.8E-49 304.4 10.8 199 23-233 15-214 (214)
2 2ovj_A Mgcracgap, RAC GTPase-a 100.0 1.9E-44 6.7E-49 298.1 13.9 194 30-234 4-198 (201)
3 2osa_A N-chimaerin; RHO-GAP, G 100.0 1.5E-44 5.2E-49 299.0 11.0 192 28-230 9-202 (202)
4 2ee4_A RHO GTPase activating p 100.0 2.4E-44 8.1E-49 299.3 10.1 193 28-234 13-206 (209)
5 3iug_A RHO/CDC42/RAC GTPase-ac 100.0 3.1E-44 1.1E-48 302.5 10.7 202 26-236 20-225 (229)
6 1f7c_A Rhogap protein; GTPase 100.0 4.1E-44 1.4E-48 302.2 9.5 213 10-234 3-220 (231)
7 3fk2_A Glucocorticoid receptor 100.0 1.4E-43 4.7E-48 301.5 11.4 181 39-232 64-245 (246)
8 1tx4_A P50-rhogap; complex (GT 100.0 9E-44 3.1E-48 293.5 9.4 188 27-230 8-198 (198)
9 3msx_B RHO GTPase-activating p 100.0 5.2E-43 1.8E-47 289.5 10.8 188 28-230 13-201 (201)
10 1ow3_A RHO-GTPase-activating p 100.0 4.9E-43 1.7E-47 297.5 9.5 192 28-235 45-239 (242)
11 1pbw_A Rhogap domain, phosphat 100.0 8.9E-43 3.1E-47 291.2 8.8 187 28-233 8-201 (216)
12 3kuq_A RHO GTPase-activating p 100.0 3.7E-41 1.3E-45 283.6 10.2 194 25-229 18-228 (228)
13 3cxl_A N-chimerin; SH2, RHO-GA 100.0 5.3E-40 1.8E-44 302.5 11.0 192 28-230 270-463 (463)
14 3eap_A RHO GTPase-activating p 100.0 2.1E-39 7.3E-44 279.3 12.7 176 41-231 81-258 (271)
15 2xs6_A Phosphatidylinositol 3- 100.0 1.8E-38 6.2E-43 264.4 3.3 182 28-234 23-213 (214)
16 3qis_A Inositol polyphosphate 100.0 2.4E-35 8.2E-40 263.9 9.3 170 38-226 194-364 (366)
17 3llb_A Uncharacterized protein 38.3 31 0.0011 22.9 3.5 46 67-122 7-52 (83)
18 3iwf_A Transcription regulator 34.3 47 0.0016 23.3 4.0 42 145-192 5-46 (107)
19 3lae_A UPF0053 protein HI0107; 33.0 35 0.0012 22.5 3.0 46 67-122 7-52 (81)
20 4h5l_A Nucleoprotein; nucleoca 29.8 2.3E+02 0.0078 23.2 7.9 101 75-193 18-118 (253)
21 2o3f_A Putative HTH-type trans 29.1 65 0.0022 22.6 4.1 40 146-191 10-49 (111)
22 1utg_A Uteroglobin; steroid bi 26.8 1.3E+02 0.0044 19.3 5.3 54 108-167 6-60 (70)
23 1rp3_B Anti sigma factor FLGM; 26.5 85 0.0029 21.2 4.1 34 75-117 55-88 (88)
24 1ccd_A Clara cell 17 KD protei 22.3 78 0.0027 20.9 3.2 47 125-174 19-66 (77)
No 1
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=100.00 E-value=5.1e-45 Score=304.35 Aligned_cols=199 Identities=26% Similarity=0.434 Sum_probs=172.4
Q ss_pred hcccccCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCcc
Q psy3002 23 AGSLINCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTI 101 (240)
Q Consensus 23 ~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~ 101 (240)
.+...++.|+-...+.++...| ++.+|+. .++++|+++|||||++|+.+++++|++.+|++...++.. ..
T Consensus 15 ~~~~vFG~~L~~~~~~~~~~vP~~v~~~i~-------~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~--~~ 85 (214)
T 3byi_A 15 IKDQIFGSHLHKVCERENSTVPWFVKQCIE-------AVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDD--SQ 85 (214)
T ss_dssp CCCCSTTSCHHHHHHHHTCSSCHHHHHHHH-------HHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTS--GG
T ss_pred CcCCccCCcHHHHHHHcCCCCChHHHHHHH-------HHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCc--cc
Confidence 3444566677776667777888 7888986 466789999999999999999999999999997665532 22
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCC
Q psy3002 102 VQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTG 181 (240)
Q Consensus 102 ~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~Nk 181 (240)
+.|+|+||++||.|||+||+||+|.++|+.|+++.+..+.++++..++.++.+||+.|+.+|++|+.||++|+++++.||
T Consensus 86 ~~dvh~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~Nk 165 (214)
T 3byi_A 86 WEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNL 165 (214)
T ss_dssp GCSHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred ccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 35999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred CChhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCC
Q psy3002 182 MTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKK 233 (240)
Q Consensus 182 M~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~ 233 (240)
||+.|||+||||+|++++..+.+ ...++..++.+|++||+||+.||+++
T Consensus 166 M~~~NLa~vf~P~Ll~~~~~~~~---~~~~~~~~~~vve~LI~~~~~iF~~d 214 (214)
T 3byi_A 166 MSTQSLGIVFGPTLLRAENETGN---MAIHMVYQNQIAELMLSEYSKIFGSE 214 (214)
T ss_dssp CCHHHHHHHHHHHHHCCTTSSSC---HHHHHHHHHHHHHHHHHTHHHHHC--
T ss_pred CCHHHhHHHhccccCCCCCccHH---HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999875422 12345678899999999999999864
No 2
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=100.00 E-value=1.9e-44 Score=298.14 Aligned_cols=194 Identities=25% Similarity=0.332 Sum_probs=171.6
Q ss_pred CCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHH
Q psy3002 30 GPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSV 108 (240)
Q Consensus 30 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~v 108 (240)
|.+......+...+| ++.+|+. .++++|+++|||||++|+.+++++|++.||+|....... ...|+|+|
T Consensus 4 g~L~~~~~~~~~~vP~iv~~~i~-------~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~---~~~d~h~v 73 (201)
T 2ovj_A 4 GMLADFVSQTSPMIPSIVVHCVN-------EIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLS---KVDDIHAI 73 (201)
T ss_dssp CCGGGGCCSSSSCCCHHHHHHHH-------HHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCGG---GCCCHHHH
T ss_pred CcHHHHhcccCCCCChHHHHHHH-------HHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCcccc---ccCCHHHH
Confidence 555666667888888 7889996 467789999999999999999999999999986543211 12599999
Q ss_pred HHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHH
Q psy3002 109 ASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVA 188 (240)
Q Consensus 109 a~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa 188 (240)
|++||.|||+||+||+|.++|+.|+++.+..+.++++..++.++.+||+.|+.+|++|+.||++|+++ +.||||+.|||
T Consensus 74 a~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa 152 (201)
T 2ovj_A 74 CSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLA 152 (201)
T ss_dssp HHHHHHHHHTSSSCTTCTTTHHHHHHHHHCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999996 68999999999
Q ss_pred HhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCCC
Q psy3002 189 IVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKKN 234 (240)
Q Consensus 189 ~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~ 234 (240)
+||||+|++++..+.+....+.++..+..+|++||+||+.||+.-.
T Consensus 153 ~vf~P~ll~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~if~~f~ 198 (201)
T 2ovj_A 153 KVFGPTIVAHAVPNPDPVTMLQDIKRQPKVVERLLSLPLEYWSQFM 198 (201)
T ss_dssp HHHHHHHTCCSSSSCCHHHHHHHHHHHHHHHHHHHHSCHHHHHGGG
T ss_pred HHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 9999999998776544566678889999999999999999998643
No 3
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-44 Score=298.95 Aligned_cols=192 Identities=31% Similarity=0.511 Sum_probs=167.7
Q ss_pred cCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCC-CCCCCCCCccccCH
Q psy3002 28 NCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDR-IPDLYTDDTIVQDI 105 (240)
Q Consensus 28 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~-~~~~~~~~~~~~d~ 105 (240)
++.|+-...+.++...| ++.+|+. .++.+|+++|||||++|+.+++++|++.||++. ..++.. ....|+
T Consensus 9 FG~~L~~~~~~~~~~vP~iv~~~i~-------~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~--~~~~d~ 79 (202)
T 2osa_A 9 YSCDLTTLVKAHTTKRPMVVDMCIR-------EIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISV--NMYEDI 79 (202)
T ss_dssp TTSCHHHHHHHHTCSSCHHHHHHHH-------HHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCST--TTCCCH
T ss_pred cCCChHHHHHHcCCCCCcHHHHHHH-------HHHHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCc--cccccH
Confidence 44555555555566778 6788886 467789999999999999999999999999853 344432 123699
Q ss_pred HHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChh
Q psy3002 106 HSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTAR 185 (240)
Q Consensus 106 ~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~ 185 (240)
|+||++||.|||+||+||+|.++|+.|+++.+..+.+++++.++.++.+||+.|+.+|++|+.||++|+++++.||||+.
T Consensus 80 ~~va~lLK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~ 159 (202)
T 2osa_A 80 NIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAE 159 (202)
T ss_dssp HHHHHHHHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002 186 NVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF 230 (240)
Q Consensus 186 nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF 230 (240)
|||+||||+|+++++.+ ....+.++..+..+|++||+||+.||
T Consensus 160 NLa~vf~P~Ll~~~~~~--~~~~~~~~~~~~~vve~LI~~~~~iF 202 (202)
T 2osa_A 160 NLGIVFGPTLMRSPELD--AMAALNDIRYQRLVVELLIKNEDILF 202 (202)
T ss_dssp HHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHccccCCCCCcc--HHHHHHHHHHHHHHHHHHHHcccccC
Confidence 99999999999998754 34456678889999999999999998
No 4
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=100.00 E-value=2.4e-44 Score=299.32 Aligned_cols=193 Identities=24% Similarity=0.348 Sum_probs=166.3
Q ss_pred cCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHH
Q psy3002 28 NCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIH 106 (240)
Q Consensus 28 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~ 106 (240)
++.|+-... ...+.+| ++.+|+. .++++|+++|||||++|+.+++++|++.||++...++... ..|+|
T Consensus 13 FG~~L~~~~-~~~~~vP~iv~~~i~-------~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~---~~d~~ 81 (209)
T 2ee4_A 13 FGMPLQDLV-TAEKPIPLFVEKCVE-------FIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSM---EVTVN 81 (209)
T ss_dssp SSSCHHHHS-CSSCCSCHHHHHHHH-------HHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHH---TCCHH
T ss_pred eCCcHHHHH-hcCCCCChHHHHHHH-------HHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccC---CCCHH
Confidence 444444433 3445677 6788886 4678899999999999999999999999999876554221 26999
Q ss_pred HHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhh
Q psy3002 107 SVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARN 186 (240)
Q Consensus 107 ~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~n 186 (240)
+||++||.|||+||+||+|.++|+.|+++.+..+.++++..++.++.+||+.|+.+|++|+.||++|+++++.||||+.|
T Consensus 82 ~va~lLK~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~N 161 (209)
T 2ee4_A 82 AVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADN 161 (209)
T ss_dssp HHHHHHHHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred HHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHH
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCCC
Q psy3002 187 VAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKKN 234 (240)
Q Consensus 187 La~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~ 234 (240)
||+||||+|++++..+. ..+.+......+|++||+||+.||+++.
T Consensus 162 Laivf~P~L~~~~~~~~---~~l~~~~~~~~vve~LI~~~~~iF~~~~ 206 (209)
T 2ee4_A 162 LSICFWPTLMRPDFENR---EFLSTTKIHQSVVETFIQQCQFFFYNGE 206 (209)
T ss_dssp HHHHHHHHHSCCCCCSS---CCSCCCTTHHHHHHHHHHTHHHHTTCCC
T ss_pred HHHHhcccccCCCCccH---HHHHHhHHHHHHHHHHHHhhHHHcCCCC
Confidence 99999999999876532 2234456678999999999999998664
No 5
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=100.00 E-value=3.1e-44 Score=302.51 Aligned_cols=202 Identities=40% Similarity=0.617 Sum_probs=164.7
Q ss_pred cccCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccC
Q psy3002 26 LINCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQD 104 (240)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d 104 (240)
..++.|+-...+.++..+| ++.+|+. .++++|+ +|||||++|+.+++++|++.||++...++... ....|
T Consensus 20 ~vFG~~L~~~~~~~~~~vP~iv~~~i~-------~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~-~~~~d 90 (229)
T 3iug_A 20 RVFGCDLGEHLLNSGFEVPQVLQSCTA-------FIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKE-PYVQD 90 (229)
T ss_dssp CSTTSCHHHHHHHHCCSSCHHHHHHHH-------HHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTST-TTTTC
T ss_pred CeECcchHHHHHhcCCCCCHHHHHHHH-------HHHHcCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCcccc-ccccc
Confidence 3455666666777788888 7889986 4678899 79999999999999999999999987666432 22359
Q ss_pred HHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCCh
Q psy3002 105 IHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTA 184 (240)
Q Consensus 105 ~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~ 184 (240)
+|+||++||.|||+||+||+|.++|+.|+++....+.++++..++.++.+||+.|+.+|++|+.||++|+++++.||||+
T Consensus 91 vh~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 170 (229)
T 3iug_A 91 IHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHA 170 (229)
T ss_dssp HHHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCH
T ss_pred hHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhccccccCCcccc---chhhhhhhhhhHHHHHHHHHhcchhcCCCCCCC
Q psy3002 185 RNVAIVWAPNLLRCKELEY---GGVAALQGVGVQAVVTEFLVVYYAAIFDKKNPR 236 (240)
Q Consensus 185 ~nLa~vfaP~l~~~~~~~~---~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~~~ 236 (240)
.|||+||||+|++++..+. .......+...+..++++||+||+.||+++...
T Consensus 171 ~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~vve~LI~~~~~iF~~~~~~ 225 (229)
T 3iug_A 171 KNLAIVWAPNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNHVDVLFSGRISM 225 (229)
T ss_dssp HHHHHHHHHHHCCC-------------------CHHHHHHHHHTHHHHTC-----
T ss_pred HHHHHHHhccccCCCcccccccchHHHHHHHHHHHHHHHHHHHhHHHhCCCcHHh
Confidence 9999999999999986431 123344566777899999999999999987754
No 6
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=100.00 E-value=4.1e-44 Score=302.17 Aligned_cols=213 Identities=24% Similarity=0.352 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHhhcccccCCCcchhh----hccccccccccccccccccccccccCCCCCCcceeeecCCcHHHHHHHH
Q psy3002 10 RLLTKYLERLSTIAGSLINCGPVLSWM----ELDNRGRRLLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRH 85 (240)
Q Consensus 10 ~~~~~~~~~~~~~~~s~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~ 85 (240)
.+...|++.+.... -.++-|.-... .++..+.+++.+|+. .++.+|+++|||||++|+.+++++|++
T Consensus 3 ~~~~~W~~~m~~~~--pvfgvpl~~~~~~~~~l~~~~p~iv~~ci~-------~le~~gl~~eGIfR~sG~~~~v~~l~~ 73 (231)
T 1f7c_A 3 EDRRLWMEAMDGRE--PVYNSNKDNQSEGTAQLDSIGFSIIKKCIH-------AVETRGINEQGLYRIVGVNSRVQKLLS 73 (231)
T ss_dssp ------------------------------CCSSHHHHHHHHHHHH-------HHHHHCTTCTTTTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCC--CccCCcchhccccccccCCcCccHHHHHHH-------HHHHhCCCCCCeeeeCCcHHHHHHHHH
Confidence 34556777665421 12333433322 244555568889996 467789999999999999999999986
Q ss_pred -HhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHH
Q psy3002 86 -TFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLE 164 (240)
Q Consensus 86 -~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~ 164 (240)
.+|.+....+........|+|+||++||.|||+||+||+|.++|+.|+++.+..+.++++..++.++.+||+.|+.+|+
T Consensus 74 ~~~d~~~~~~~~l~~~~~~dvh~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~r~~~l~~ll~~LP~~n~~~L~ 153 (231)
T 1f7c_A 74 ILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLH 153 (231)
T ss_dssp HHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCHHHHHHHHHHHTCSSHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHhCcCCCcccCccccccccHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 5787742222111112369999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCCC
Q psy3002 165 YLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKKN 234 (240)
Q Consensus 165 ~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~ 234 (240)
+|+.||++|+++++.||||+.|||+||||+|++++..+. ..+.++..++.+|++||+||+.||++..
T Consensus 154 ~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~---~~~~~~~~~~~vve~LI~~~~~iF~~~~ 220 (231)
T 1f7c_A 154 LLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETV---AAIMDIKFQNIVIEILIENHEKIFNTVP 220 (231)
T ss_dssp HHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC---CC---SGGGGHHHHHHHHHHHHHTHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHhccccCCCCcccH---HHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999987532 2345667788999999999999998665
No 7
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-43 Score=301.52 Aligned_cols=181 Identities=23% Similarity=0.385 Sum_probs=161.3
Q ss_pred cccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHh
Q psy3002 39 DNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFR 117 (240)
Q Consensus 39 ~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr 117 (240)
..+.+| ++.+|+. .++.+|+++|||||++|+.+++++|++.||++...++... ..|+|+||++||.|||
T Consensus 64 ~~~~vP~iv~~~i~-------~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~---~~dvh~va~lLK~fLR 133 (246)
T 3fk2_A 64 PEKPIPIFIERCIE-------YIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEK---DFTVNTVAGAMKSFFS 133 (246)
T ss_dssp SSSCSCHHHHHHHH-------HHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGG---TCCHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHH-------HHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccc---cCcHHHHHHHHHHHHH
Confidence 455677 6788886 4677899999999999999999999999999987665432 2599999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhcccccc
Q psy3002 118 ELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197 (240)
Q Consensus 118 ~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~ 197 (240)
+||+||+|.++|+.|+++....+.++++..++.++..||+.|+.+|++|+.||++|+++++.|+||+.|||+||||+|+|
T Consensus 134 eLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLAivf~P~Llr 213 (246)
T 3fk2_A 134 ELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMR 213 (246)
T ss_dssp HSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHHC
T ss_pred hCCCccCCHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCchHHhHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccchhhhhhhhhhHHHHHHHHHhcchhcCCC
Q psy3002 198 CKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDK 232 (240)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~ 232 (240)
++..+ +..+.+......+|++||+||+.||.+
T Consensus 214 p~~~~---~~~~~~~~~~~~ive~LI~~~~~iF~n 245 (246)
T 3fk2_A 214 PDFST---MDALTATRTYQTIIELFIQQCPFFFYN 245 (246)
T ss_dssp CCSSS---SCHHHHHHHHHHHHHHHHHTHHHHHC-
T ss_pred CCCcc---HHHHHHHHHHHHHHHHHHHhHHHhcCC
Confidence 87653 333455667789999999999999986
No 8
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=100.00 E-value=9e-44 Score=293.47 Aligned_cols=188 Identities=23% Similarity=0.361 Sum_probs=163.1
Q ss_pred ccCCCcchhhhccc--cccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCcccc
Q psy3002 27 INCGPVLSWMELDN--RGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQ 103 (240)
Q Consensus 27 ~~~~~~~~~~~~~~--~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~ 103 (240)
.++.|+-...+.+. ...| ++.+|+. .++++|+++|||||++|+.+++++|++.||+|...++... .
T Consensus 8 vFG~~L~~~~~~~~~~~~vP~iv~~~i~-------~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~----~ 76 (198)
T 1tx4_A 8 QFGVSLQHLQEKNPEQEPIPIVLRETVA-------YLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQY----N 76 (198)
T ss_dssp CTTSCHHHHHHHSTTCCSSCHHHHHHHH-------HHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGS----S
T ss_pred ccCCcHHHHHhhCCCCCCCCHHHHHHHH-------HHHHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCcccc----c
Confidence 34555555544433 3677 7888886 4677899999999999999999999999999987665332 6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCC
Q psy3002 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMT 183 (240)
Q Consensus 104 d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~ 183 (240)
|+|++|++||.|||+||+||+|.++|+.|+++.+ .+++++++.++.++.+||+.|+.+|++|+.||++|+++++.||||
T Consensus 77 d~~~~a~lLK~flreLpePLi~~~l~~~~~~~~~-~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~ 155 (198)
T 1tx4_A 77 ALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLN-IDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMT 155 (198)
T ss_dssp CTHHHHHHHHHHHHHSSSCTTCGGGHHHHHTGGG-SCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCC
T ss_pred cchHHHHHHHHHHHHCCCcCCCHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 8999999999999999999999999999999765 456788999999999999999999999999999999999999999
Q ss_pred hhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002 184 ARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF 230 (240)
Q Consensus 184 ~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF 230 (240)
+.|||+||||+|+++++. ...+.++...+.++++||+||+.||
T Consensus 156 ~~nLa~vf~P~Ll~~~~~----~~~~~~~~~~~~~v~~LI~~~~~iF 198 (198)
T 1tx4_A 156 NTNLAVVFGPNLLWAKDA----AITLKAINPINTFTKFLLDHQGELF 198 (198)
T ss_dssp HHHHHHHHHHHHCCCSSH----HHHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHhhhcccccCCCCc----cccHHHHHHHHHHHHHHHHhHHHhC
Confidence 999999999999999863 2345667778999999999999998
No 9
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.2e-43 Score=289.51 Aligned_cols=188 Identities=19% Similarity=0.241 Sum_probs=160.8
Q ss_pred cCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHH
Q psy3002 28 NCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIH 106 (240)
Q Consensus 28 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~ 106 (240)
++.|+-...+ +.+.| ++.+|+. .++++|+++|||||++|+.+++++|++.+|+|...++.. .|+|
T Consensus 13 FG~~L~~~~~--~~~vP~~v~~~i~-------~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~-----~d~~ 78 (201)
T 3msx_B 13 FGISLPNICE--NDNLPKPVLDMLF-------FLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDC-----ESIF 78 (201)
T ss_dssp TTSCHHHHSG--GGCCCHHHHHHHH-------HHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCTTS-----SCHH
T ss_pred eCCcHHHHhc--CCCCCHHHHHHHH-------HHHHhCCCCCCeeeeCCCHHHHHHHHHHhccCCCCCCCc-----ccHH
Confidence 4444444433 34577 6778886 467889999999999999999999999999998765533 5999
Q ss_pred HHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhh
Q psy3002 107 SVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARN 186 (240)
Q Consensus 107 ~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~n 186 (240)
+||++||.|||+||+||+|.++|+.|+++....+.+++++.++.++.+||+.|+.+|++|+.||++|+++++.||||+.|
T Consensus 79 ~va~lLK~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~n 158 (201)
T 3msx_B 79 VIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFN 158 (201)
T ss_dssp HHHHHHHHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCChhh
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002 187 VAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF 230 (240)
Q Consensus 187 La~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF 230 (240)
||+||||+|++++.... .............++++||+||++||
T Consensus 159 La~vf~P~ll~~~~~~~-~~~~~~~~~~~~~iv~~LI~~~~~IF 201 (201)
T 3msx_B 159 LAVCVAPSILWPPASSS-PELENEFTKKVSLLIQFLIENCLRIF 201 (201)
T ss_dssp HHHHHHHHHCCCCTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccccCCCCCCC-hHHHHHHHHHHHHHHHHHHHhhHhhC
Confidence 99999999999987532 11122223445567999999999998
No 10
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=100.00 E-value=4.9e-43 Score=297.46 Aligned_cols=192 Identities=23% Similarity=0.377 Sum_probs=162.1
Q ss_pred cCCCcchhhhccc--cccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccC
Q psy3002 28 NCGPVLSWMELDN--RGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQD 104 (240)
Q Consensus 28 ~~~~~~~~~~~~~--~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d 104 (240)
++.|+-...+... ...| ++.+|+. .++++|+++|||||++|+.+++++|++.||+|...++... .|
T Consensus 45 FG~~L~~~~~~~~~~~~vP~iv~~~i~-------~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~----~d 113 (242)
T 1ow3_A 45 FGVSLQHLQEKNPEQEPIPIVLRETVA-------YLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQY----NE 113 (242)
T ss_dssp SSSCHHHHHHHSTTCCSSCHHHHHHHH-------HHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGS----SC
T ss_pred cCCcHHHHHhhcCCCCCCCHHHHHHHH-------HHHHcCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCcccc----cc
Confidence 4445544444443 3677 6788886 4677899999999999999999999999999987765332 69
Q ss_pred HHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCCh
Q psy3002 105 IHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTA 184 (240)
Q Consensus 105 ~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~ 184 (240)
+|++|++||.|||+||+||+|.++|+.|+++.+. +.+++++.++.++.+||+.|+.+|++|+.||++|+++++.||||+
T Consensus 114 v~~va~lLK~flReLPePLl~~~ly~~~~~~~~~-~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 192 (242)
T 1ow3_A 114 LHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTN 192 (242)
T ss_dssp THHHHHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCH
T ss_pred hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCH
Confidence 9999999999999999999999999999997663 567899999999999999999999999999999999999999999
Q ss_pred hhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCCCC
Q psy3002 185 RNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKKNP 235 (240)
Q Consensus 185 ~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~~ 235 (240)
.|||+||||+|+++++. ...+.++...+.++++||+||+.||++..+
T Consensus 193 ~NLAivf~P~Ll~~~~~----~~~~~~~~~~~~~v~~LI~~~~~iF~~~~~ 239 (242)
T 1ow3_A 193 TNLAVVFGPNLLWAKDA----AITLKAINPINTFTKFLLDHQGELFPSPDP 239 (242)
T ss_dssp HHHHHHHHHHHCCCSSH----HHHHHTHHHHHHHHHHHHHTHHHHC-----
T ss_pred HHhHHhhcchhCCCCCc----cccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999863 234566777889999999999999997654
No 11
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=100.00 E-value=8.9e-43 Score=291.18 Aligned_cols=187 Identities=20% Similarity=0.231 Sum_probs=154.7
Q ss_pred cCCCcchhhhc--cccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCC-CCCCCCCCcccc
Q psy3002 28 NCGPVLSWMEL--DNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDR-IPDLYTDDTIVQ 103 (240)
Q Consensus 28 ~~~~~~~~~~~--~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~-~~~~~~~~~~~~ 103 (240)
++.|+-...+. ....+| ++.+|+. .++++|+++|||||++|+.++ ++|++.||++. ..++. ..
T Consensus 8 fGv~L~~l~~~~~~~~~vP~iv~~~i~-------~l~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~~~-----~~ 74 (216)
T 1pbw_A 8 QALTLPDLAEQFAPPDIAPPLLIKLVE-------AIEKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSVDLE-----MI 74 (216)
T ss_dssp ----CCCHHHHCCTTSCSCHHHHHHHH-------HHHHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCCGG-----GB
T ss_pred CCCcHHHHHhccCCCCCcCHHHHHHHH-------HHHHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCCcc-----cc
Confidence 34455444443 245677 7888986 467789999999999999999 99999999985 33332 26
Q ss_pred CHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHh-cCCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHhhcCCCCC
Q psy3002 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQ-QSKLQDQLTQMRETVE--KLPPPHYRTLEYLIGHLSRVAAHGDKT 180 (240)
Q Consensus 104 d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~--~Lp~~n~~~L~~l~~~L~~V~~~s~~N 180 (240)
|+|+||++||.|||+||+||+|.++|+.|+++.+ ..+.++++..++.++. .||+.|+.+|++|+.||++|+++++.|
T Consensus 75 dv~~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~ll~~~~LP~~n~~~L~~L~~~L~~V~~~~~~N 154 (216)
T 1pbw_A 75 DVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKN 154 (216)
T ss_dssp CHHHHHHHHHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999986 6788899999999999 999999999999999999999999999
Q ss_pred CCChhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCC
Q psy3002 181 GMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKK 233 (240)
Q Consensus 181 kM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~ 233 (240)
|||+.|||+||||+|++++..+.. . . ..+..+|++||+||+.||+..
T Consensus 155 kM~~~NLAivf~P~Ll~~~~~~~~--~---~-~~~~~vve~LI~~~~~iF~~~ 201 (216)
T 1pbw_A 155 LLNARVLSEIFSPMLFRFSAASSD--N---T-ENLIKVIEILISTEWNERQPA 201 (216)
T ss_dssp CCCHHHHHHHHHHHHHTCSSCCHH--H---H-HHHHHHHHHHHHTTC------
T ss_pred CCCHHHHHHHHhhhcCCCCCCchh--h---h-HHHHHHHHHHHhhhHHhcCCC
Confidence 999999999999999999876421 1 1 778999999999999999975
No 12
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.7e-41 Score=283.57 Aligned_cols=194 Identities=20% Similarity=0.204 Sum_probs=161.8
Q ss_pred ccccCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCcccc
Q psy3002 25 SLINCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQ 103 (240)
Q Consensus 25 s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~ 103 (240)
...++.|+....+.+....| ++.+|+. .++++|+++|||||++|+.+++++|++.+|.+........ .
T Consensus 18 ~~vFGv~L~~~~~~~~~~vP~~v~~~i~-------~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~----~ 86 (228)
T 3kuq_A 18 GSVFGVPLTVNVQRTGQPLPQSIQQAMR-------YLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEG----Q 86 (228)
T ss_dssp TSSTTCCHHHHHHHHSSSSCHHHHHHHH-------HHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCCCTT----C
T ss_pred CCEECCchHHHHHHcCCCCCHHHHHHHH-------HHHHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCCccc----C
Confidence 34466677666777777888 7888986 4778899999999999999999999999987643322222 6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCC
Q psy3002 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMT 183 (240)
Q Consensus 104 d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~ 183 (240)
|+|+||++||.|||+||+||+|.++|+.|+++.+..+.+++++.++.++..||+.|+.+|++|+.||++|+++++.|+||
T Consensus 87 ~~~~va~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~ 166 (228)
T 3kuq_A 87 SAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMT 166 (228)
T ss_dssp CHHHHHHHHHHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCC
T ss_pred CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCc
Confidence 99999999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred hhhHHHhhccccccCCcccc----------------chhhhhhhhhhHHHHHHHHHhcchhc
Q psy3002 184 ARNVAIVWAPNLLRCKELEY----------------GGVAALQGVGVQAVVTEFLVVYYAAI 229 (240)
Q Consensus 184 ~~nLa~vfaP~l~~~~~~~~----------------~~~~~~~~~~~~~~vv~~LI~~~~~i 229 (240)
+.|||+||||+||+++..+. .....+.+...+..++.+||+||+.|
T Consensus 167 ~~NLAivf~P~Ll~~~~~~~~s~~~~~~~r~~~~~~~~~~~l~e~~aa~~~l~~mi~~~~~l 228 (228)
T 3kuq_A 167 PTNLAVCLAPSLFHLNTLKRENSSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMIAECKKL 228 (228)
T ss_dssp HHHHHHHHHHHHHTCCCC-------------------CHHHHHHHHHHHHHHHHHHHC----
T ss_pred hhHhHHHHhhhhcCCCCCCCCCCCcchhhhccccCCCcHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999876421 01223445567788999999999875
No 13
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=100.00 E-value=5.3e-40 Score=302.51 Aligned_cols=192 Identities=31% Similarity=0.514 Sum_probs=167.2
Q ss_pred cCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCC-CCCCCCCCccccCH
Q psy3002 28 NCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDR-IPDLYTDDTIVQDI 105 (240)
Q Consensus 28 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~-~~~~~~~~~~~~d~ 105 (240)
++.|+-...+.+...+| ++.+|+. .++.+|+.+|||||++|+.+++++|++.||++. ..++... ...|+
T Consensus 270 FG~~L~~~~~~~~~~vP~iv~~~i~-------~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~--~~~dv 340 (463)
T 3cxl_A 270 YSCDLTTLVKAHTTKRPMVVDMCIR-------EIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVN--MYEDI 340 (463)
T ss_dssp TTSCHHHHHHHHTCSSCHHHHHHHH-------HHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTT--TCCCH
T ss_pred cccccchhhhccCCCCCeeHHHHHH-------HHHhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccc--cCCCc
Confidence 34454445555667788 6778886 467889999999999999999999999999854 3343321 23699
Q ss_pred HHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChh
Q psy3002 106 HSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTAR 185 (240)
Q Consensus 106 ~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~ 185 (240)
|+||++||.|||+||+||+|.++|+.|+++.+..+.+++++.++.++..||+.|+.+|++|+.||++|+++++.|+||+.
T Consensus 341 ~~va~lLK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~ 420 (463)
T 3cxl_A 341 NIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAE 420 (463)
T ss_dssp HHHHHHHHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH
T ss_pred chhhhHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcccccCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002 186 NVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF 230 (240)
Q Consensus 186 nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF 230 (240)
|||+||||+|+++++.+ ....+.++..+..+|++||+||+.||
T Consensus 421 NLAivf~P~Ll~~~~~~--~~~~~~~~~~~~~vve~LI~~~~~iF 463 (463)
T 3cxl_A 421 NLGIVFGPTLMRSPELD--AMAALNDIRYQRLVVELLIKNEDILF 463 (463)
T ss_dssp HHHHHHHHHHCCCCCSC--TTGGGGGHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHhhccccCCCCcc--HHHHHHHHHHHHHHHHHHHhchhhcC
Confidence 99999999999998754 34456778889999999999999998
No 14
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=279.25 Aligned_cols=176 Identities=22% Similarity=0.236 Sum_probs=140.6
Q ss_pred cccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhC
Q psy3002 41 RGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFREL 119 (240)
Q Consensus 41 ~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~L 119 (240)
...| ++.+|+. .+++ |+.+|||||++|+.+++++|++.||++.... .. .|+|+||++||.|||+|
T Consensus 81 ~~iP~~l~~~~~-------~le~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~--~~----~~~~~va~lLK~fLReL 146 (271)
T 3eap_A 81 GHIPSFLVDACT-------SLED-HIHTEGLFRKSGSVIRLKALKNKVDHGEGCL--SS----APPCDIAGLLKQFFREL 146 (271)
T ss_dssp EEEEHHHHHHHH-------HHGG-GTTC--------CHHHHHHHHHHHHHC-------C----CCHHHHHHHHHHHHHHS
T ss_pred CCcChHHHHHHH-------HHHh-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCCc--cc----ccHHHHHHHHHHHHHhC
Confidence 3455 5566664 2344 7999999999999999999999999987542 22 68999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCC
Q psy3002 120 PNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCK 199 (240)
Q Consensus 120 p~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~ 199 (240)
|+||+|.++|+.|+++.+. +.+++...++.++..||+.|+.+|++|+.||++|+++++.|+||+.|||+||||+|++++
T Consensus 147 PePLl~~~ly~~~~~~~~~-~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~ 225 (271)
T 3eap_A 147 PEPILPADLHEALLKAQQL-GTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTS 225 (271)
T ss_dssp SSCSSCGGGHHHHHHHTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCC
T ss_pred CcccCCHHHHHHHHHHHHH-hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHhHhccCC
Confidence 9999999999999998876 456788889999999999999999999999999999999999999999999999999998
Q ss_pred cccc-chhhhhhhhhhHHHHHHHHHhcchhcCC
Q psy3002 200 ELEY-GGVAALQGVGVQAVVTEFLVVYYAAIFD 231 (240)
Q Consensus 200 ~~~~-~~~~~~~~~~~~~~vv~~LI~~~~~iF~ 231 (240)
+... .......++..++.+|++||+||+.||.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~vve~LI~~~~~IF~ 258 (271)
T 3eap_A 226 EGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGR 258 (271)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHTGGGTTC
T ss_pred CCccchhhhHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 7321 1222345667788999999999999995
No 15
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=264.40 Aligned_cols=182 Identities=20% Similarity=0.153 Sum_probs=137.2
Q ss_pred cCCCcchhhh--ccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccC
Q psy3002 28 NCGPVLSWME--LDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQD 104 (240)
Q Consensus 28 ~~~~~~~~~~--~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d 104 (240)
++.|+-...+ .....+| ++.+|+. .++++|+++|||||++|+. ||+. ....++ ...|
T Consensus 23 FGv~L~~l~~~~~~~~~vP~iv~~~i~-------~l~~~Gl~~eGIfR~sG~~-----lr~~---~~~~dl-----~~~d 82 (214)
T 2xs6_A 23 MGLTLPDLPEQFSPPDVAPPLLVKLVE-------AIERTGLDSESHYRPELPA-----PRTD---WSLSDV-----DQWD 82 (214)
T ss_dssp --CCCCCHHHHCCTTCCSCHHHHHHHH-------HHHHHCTTCSGGGCCSCCC-----CCCC---CCCTTG-----GGCC
T ss_pred cCcCHHHHHHhhCCCCCCCHHHHHHHH-------HHHHhCCCCCCCeeeCHHH-----HHhc---cccCCC-----ccCC
Confidence 4556555444 2345677 7888996 4778899999999999999 4431 122222 2379
Q ss_pred HHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCCh
Q psy3002 105 IHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTA 184 (240)
Q Consensus 105 ~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~ 184 (240)
+|+||++||.|||+||+||+|.++|+.|+++.+..+..++.. .++..||+.|+.+|++|+.||++|+++++.||||+
T Consensus 83 vh~va~lLK~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~---~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 159 (214)
T 2xs6_A 83 TAALADGIKSFLLALPAPLVTPEASAEARRALREAAGPVGPA---LEPPTLPLHRALTLRFLLQHLGRVARRAPALGPAV 159 (214)
T ss_dssp HHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGG---GSTTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHH---HHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCH
Confidence 999999999999999999999999999999998665544443 68999999999999999999999999999999999
Q ss_pred hhHHHhhccccccCCcccc------chhhhhhhhhhHHHHHHHHHhcchhcCCCCC
Q psy3002 185 RNVAIVWAPNLLRCKELEY------GGVAALQGVGVQAVVTEFLVVYYAAIFDKKN 234 (240)
Q Consensus 185 ~nLa~vfaP~l~~~~~~~~------~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~ 234 (240)
.|||+||||+|+|+++.+. .....+.++..+..+|++||+| .+|+.++
T Consensus 160 ~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~~d~~~~~~vve~LI~n--~ife~d~ 213 (214)
T 2xs6_A 160 RALGATFGPLLLRAPPPPSSPPPGGAPDGSEPSPDFPALLVEKLLQE--HLEEQEV 213 (214)
T ss_dssp HHHHHHHHHHHHC------------------CCTTHHHHHHHHHHHH--HHHC---
T ss_pred HHHHHHHhhhhcCCcccccccccccchhhhHHhHHHHHHHHHHHHhh--hccccCC
Confidence 9999999999999987431 1234567788899999999975 6887654
No 16
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=100.00 E-value=2.4e-35 Score=263.86 Aligned_cols=170 Identities=16% Similarity=0.160 Sum_probs=134.3
Q ss_pred ccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHH
Q psy3002 38 LDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYF 116 (240)
Q Consensus 38 ~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~fl 116 (240)
.....+| ++.+|+. .++++|+.+|||||++|+.+++++|++.+|++...++ . .|+|+||++||.||
T Consensus 194 ~~~~~iP~~v~~~i~-------~l~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~--~----~dvh~va~lLK~fL 260 (366)
T 3qis_A 194 ERPLQVPKEIWLLVD-------HLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIPETI--P----GSNHSVAEALLIFL 260 (366)
T ss_dssp -CCCSSCHHHHHHHH-------HHHHHCTTCTTTTTSCCCHHHHHHHHHHHHHCCCSSC--C----SCHHHHHHHHHHHH
T ss_pred CCCCCcChHHHHHHH-------HHHhcCCCCCCeEeCCCCHHHHHHHHHHHcCCCCCcc--c----cCHHHHHHHHHHHH
Confidence 3444666 6777886 4778899999999999999999999999999876543 1 49999999999999
Q ss_pred hhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccc
Q psy3002 117 RELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLL 196 (240)
Q Consensus 117 r~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~ 196 (240)
|+||+||+|.++|+.|+++.+. .+.++.++..||+.|+.+|+||+.||++|+++++.|+||+.|||+||||+|+
T Consensus 261 ReLPePLi~~~ly~~~~~~~~~------~~~~~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Ll 334 (366)
T 3qis_A 261 EALPEPVICYELYQRCLDSAYD------PRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLL 334 (366)
T ss_dssp HHCSSCSSCHHHHHHHHHHTTC------HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHS
T ss_pred HhCCCCCCcHHHHHHHHHHhhh------HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcc
Confidence 9999999999999999998763 2457889999999999999999999999999999999999999999999999
Q ss_pred cCCccccchhhhhhhhhhHHHHHHHHHhcc
Q psy3002 197 RCKELEYGGVAALQGVGVQAVVTEFLVVYY 226 (240)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~ 226 (240)
|+++................-++++||++-
T Consensus 335 r~~~~~~~~~~~~~~~~~v~fi~~fL~~~~ 364 (366)
T 3qis_A 335 RPPPNLMARQTPSDRQRAIQFLLGFLLGSE 364 (366)
T ss_dssp CCCC--------CHHHHHHHHHHHHHC---
T ss_pred cCCCcchhhhhHHHHHHHHHHHHHHhccCC
Confidence 999754222211122233344455555543
No 17
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=38.28 E-value=31 Score=22.89 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=35.2
Q ss_pred CcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCC
Q psy3002 67 DQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNP 122 (240)
Q Consensus 67 ~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~p 122 (240)
.+|-|+++|... ++.+.+.++-. +.. .+..+++|++-.-|..+|..
T Consensus 7 ~dg~~~v~G~~~-l~dl~~~l~~~----l~~-----~~~~Tl~G~i~~~lg~iP~~ 52 (83)
T 3llb_A 7 PSGDFIVKALTP-VDAFNDFFGSE----FSD-----EEFDTVGGLVMSAFGHLPKR 52 (83)
T ss_dssp TTSCEEEETTCB-HHHHHHHHCCC----CCT-----TTCSBHHHHHHHHHSSCCCT
T ss_pred CCCEEEEEccCC-HHHHHHHhCCC----CCC-----CCCcCHHHHHHHHhCcCCCC
Confidence 468899999865 77788888653 221 35679999999999999864
No 18
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=34.31 E-value=47 Score=23.30 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhc
Q psy3002 145 LTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWA 192 (240)
Q Consensus 145 ~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfa 192 (240)
+..++.....|++..+.+..|++.+...+.. |++..||.--+
T Consensus 5 ~~~I~~~~~~lt~~e~~ia~yil~~~~~~~~------~si~elA~~~~ 46 (107)
T 3iwf_A 5 LYKIDNQYPYFTKNEKKIAQFILNYPHKVVN------MTSQEIANQLE 46 (107)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHCHHHHTT------CCHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhCHHHHHH------CCHHHHHHHHC
Confidence 3556777889999999999999999998877 78888886433
No 19
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=32.97 E-value=35 Score=22.51 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=34.6
Q ss_pred CcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCC
Q psy3002 67 DQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNP 122 (240)
Q Consensus 67 ~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~p 122 (240)
.+|-|+++|... ++.+.+.++-.- .. .+..+++|++-..|..+|+.
T Consensus 7 ~dg~~~v~g~~~-l~dl~~~l~~~l----~~-----~~~~Tl~G~i~~~lg~iP~~ 52 (81)
T 3lae_A 7 SDGSMIIDGSAN-LRDLNKMFNWEL----DT-----EDARTFNGLILEHLEEIPDE 52 (81)
T ss_dssp TTSCEEEETTCB-HHHHHHHHCCCC----CC-----SSCSBHHHHHHHHCSSCCCT
T ss_pred CCCEEEEEeeCC-HHHHHHHhCCCC----CC-----CCCccHHHHHHHHhCCCCCC
Confidence 467899999865 777888887532 11 35679999999999888864
No 20
>4h5l_A Nucleoprotein; nucleocapsid protein, N protein, RNA binding, RNP, viral protein; 2.75A {Toscana virus}
Probab=29.82 E-value=2.3e+02 Score=23.22 Aligned_cols=101 Identities=12% Similarity=0.040 Sum_probs=68.1
Q ss_pred CCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy3002 75 CPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEK 154 (240)
Q Consensus 75 g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 154 (240)
-+...+..+.+.|.-.+ .|++.|-.+||.-=...++-.- .+....++-.+ .|-+.......+
T Consensus 18 ~d~~~i~~~v~~f~YqG-----------FDa~~vi~~l~erg~~~g~~~~-~D~k~mIVl~l------tRGNk~~km~~k 79 (253)
T 4h5l_A 18 ADSGTINAWVNEFAYQG-----------FDPKRIVQLVKERGTAKGRDWK-KDVKMMIVLNL------VRGNKPEAMMKK 79 (253)
T ss_dssp CCHHHHHHHHHHHSBCS-----------SCHHHHHHHHHHHHHHTTCCHH-HHHHHHHHHHH------HHCSCHHHHHHT
T ss_pred ccHHHHHHHHHHHHhcC-----------CCHHHHHHHHHHHhccchhhHH-HhHHHHhhhhh------hcCCCHHHHHHH
Confidence 35566777777775432 4888888888764433332221 11111111111 233445667888
Q ss_pred CCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhcc
Q psy3002 155 LPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAP 193 (240)
Q Consensus 155 Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP 193 (240)
+.+.....+..|+.+..-+..+...+..|...+|.+|++
T Consensus 80 ms~~Gk~~~~~Li~~Y~Lk~~~~~r~~lTLsRVAa~fa~ 118 (253)
T 4h5l_A 80 MSEKGASIVANLISVYQLKEGNPGRDTITLSRVSAAFVP 118 (253)
T ss_dssp SCHHHHHHHHHHHHHHTBCSSSCCTTCBCHHHHHHHTHH
T ss_pred hCHHHHHHHHHHHHHhCcccCCCCcccccHHHHHHHhhH
Confidence 999999999999999999998888888999999999996
No 21
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=29.07 E-value=65 Score=22.60 Aligned_cols=40 Identities=15% Similarity=0.366 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhh
Q psy3002 146 TQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVW 191 (240)
Q Consensus 146 ~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vf 191 (240)
..++.....|++..+.+..|++.+...|.. |++..||.--
T Consensus 10 ~~i~~~~~~ls~~e~~ia~yil~~~~~~~~------~si~elA~~~ 49 (111)
T 2o3f_A 10 AIIQSMXHXLPPSERKLADYILAHPHXAIE------STVNEISALA 49 (111)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHCHHHHHT------CCHHHHHHHT
T ss_pred HHHHHHhccCCHHHHHHHHHHHHChHHHHh------cCHHHHHHHH
Confidence 445666788999999999999999988877 6777777543
No 22
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=26.78 E-value=1.3e+02 Score=19.32 Aligned_cols=54 Identities=17% Similarity=0.275 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCC-HHHHHHHHHHHHhcCCccHHHHHHHHH
Q psy3002 108 VASLLKMYFRELPNPLCTYQLYHSFVGAVQQSK-LQDQLTQMRETVEKLPPPHYRTLEYLI 167 (240)
Q Consensus 108 va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~Lp~~n~~~L~~l~ 167 (240)
+...+..||.. +.+.|...++-+...+ ..+....+++++..|+..++..+..++
T Consensus 6 l~~~v~~~l~~------s~~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l 60 (70)
T 1utg_A 6 FAHVIENLLLG------TPSSYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLT 60 (70)
T ss_dssp HHHHHHHHHHS------CHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC------CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34455556654 5666777666665332 245577889999999998887765544
No 23
>1rp3_B Anti sigma factor FLGM; transcription; 2.30A {Aquifex aeolicus} SCOP: a.137.11.1 PDB: 1sc5_B
Probab=26.47 E-value=85 Score=21.18 Aligned_cols=34 Identities=9% Similarity=0.013 Sum_probs=26.9
Q ss_pred CCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHh
Q psy3002 75 CPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFR 117 (240)
Q Consensus 75 g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr 117 (240)
-+..+|++|++++..|.+. .|+..+|.-|-.||+
T Consensus 55 ir~~kV~~iK~aI~~GtY~---------vd~~~iA~kml~~~~ 88 (88)
T 1rp3_B 55 DLEKKVKELKEKIEKGEYE---------VSDEKVVKGLIEFFT 88 (88)
T ss_dssp SHHHHHHHHHHHHHTTCCC---------CCHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCC---------CCHHHHHHHHHHHhC
Confidence 4567899999999999865 478888887777664
No 24
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=22.34 E-value=78 Score=20.89 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=31.0
Q ss_pred ChhhHHHHHHHHhcCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh
Q psy3002 125 TYQLYHSFVGAVQQSK-LQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVA 174 (240)
Q Consensus 125 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~ 174 (240)
+.+.|...++-+...+ ..+....+++++..|+..++..+..+ +.+|.
T Consensus 19 s~~~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~---l~kI~ 66 (77)
T 1ccd_A 19 SESNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKL---TEKIL 66 (77)
T ss_dssp CHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHH---HHHHT
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH---HHHHH
Confidence 5666766666555322 24557788999999999888766544 44444
Done!