RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3002
(240 letters)
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics
consortium (SGC), GAP, alternative splicing, cell
junction, cell membrane; 1.77A {Homo sapiens}
Length = 229
Score = 197 bits (503), Expect = 8e-64
Identities = 78/158 (49%), Positives = 107/158 (67%), Gaps = 4/158 (2%)
Query: 84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
RH FD + +PDL T + VQDIHSV SL K+YFRELPNPL TYQLY F AV + ++
Sbjct: 71 RHEFDSEHVPDL-TKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEE 129
Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
+L ++ + +++LPPPHYRTLE+L+ HLS +A + T M A+N+AIVWAPNLLR K++E
Sbjct: 130 RLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIES 189
Query: 204 G---GVAALQGVGVQAVVTEFLVVYYAAIFDKKNPRAS 238
G AA V +Q+VV EF++ + +F + A
Sbjct: 190 ACFSGTAAFMEVRIQSVVVEFILNHVDVLFSGRISMAM 227
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.80A {Homo sapiens}
Length = 202
Score = 187 bits (476), Expect = 5e-60
Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 5/148 (3%)
Query: 84 RHTFDEDR-IPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQ 142
+ FD D D+ + +DI+ + LK+YFR+LP PL TY Y F+ + +
Sbjct: 59 KMAFDRDGEKADI--SVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPD 116
Query: 143 DQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
+QL + E ++ LPP H TL YL+ HL RV H + M A N+ IV+ P L+R EL+
Sbjct: 117 EQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELD 176
Query: 203 YGGVAALQGVGVQAVVTEFLVVYYAAIF 230
+AAL + Q +V E L+ +F
Sbjct: 177 --AMAALNDIRYQRLVVELLIKNEDILF 202
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH
domain, signaling protein; 2.40A {Gallus gallus} SCOP:
a.116.1.1
Length = 231
Score = 187 bits (477), Expect = 7e-60
Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 4/149 (2%)
Query: 84 RHTFDEDRIP-DLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQ 142
+ + + T+ +I ++ S LK Y R LP PL YQ SF+ A + +
Sbjct: 72 LSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQE 131
Query: 143 DQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
+++++ V +LP + + L L+ HL++VA + + MT N+ +V+ P LLR +E
Sbjct: 132 SRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQE-- 189
Query: 203 YGGVAALQGVGVQAVVTEFLVVYYAAIFD 231
VAA+ + Q +V E L+ + IF+
Sbjct: 190 -ETVAAIMDIKFQNIVIEILIENHEKIFN 217
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural
genomics consortium, signaling protein; 2.25A {Homo
sapiens}
Length = 214
Score = 186 bits (474), Expect = 1e-59
Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 5/150 (3%)
Query: 84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
R +++ +L DD+ +DIH V LKM+FRELP PL Y + FV A+++
Sbjct: 70 RFIVNQEEKLNL--DDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNT 127
Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
++ ++ V+KLPPP+ T++ L GHL+++ A K M+ +++ IV+ P LLR +
Sbjct: 128 RIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAEN--- 184
Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIFDKK 233
+ Q + E ++ Y+ IF +
Sbjct: 185 ETGNMAIHMVYQNQIAELMLSEYSKIFGSE 214
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein,
GTPase-activating protein for RHO family members,
structural genomics, NPPSFA; NMR {Homo sapiens} PDB:
2ee5_A
Length = 209
Score = 184 bits (470), Expect = 6e-59
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 6/148 (4%)
Query: 84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
+ FD+D +L + + +++VA LK +F +LP+PL Y L+ + A + +
Sbjct: 62 QKQFDQDHNINLVSMEV---TVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTE 118
Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
+L ++E V+K P +Y Y+I HL+RV+ MTA N++I + P L+R
Sbjct: 119 RLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDF--- 175
Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIFD 231
L + V E + F
Sbjct: 176 ENREFLSTTKIHQSVVETFIQQCQFFFY 203
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics
consortium, GTPase-activating protein, SGC, alternative
splicing, anti-oncogene; 2.80A {Homo sapiens}
Length = 246
Score = 184 bits (470), Expect = 1e-58
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 6/150 (4%)
Query: 84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
+ FD+D DL D +++VA +K +F ELP+PL Y + V A + + +
Sbjct: 103 QRQFDQDHNLDLAEKDF---TVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQ 159
Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
+L ++E ++K P ++ +Y+I HL++V+ + MT+ N++I + P L+R
Sbjct: 160 KLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRPDF--- 216
Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIFDKK 233
+ AL + E + F +
Sbjct: 217 STMDALTATRTYQTIIELFIQQCPFFFYNR 246
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein,
structural genomics, structural genomics consortium,
SGC; HET: 7PE; 1.49A {Homo sapiens}
Length = 201
Score = 177 bits (450), Expect = 4e-56
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 4/150 (2%)
Query: 84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
+ F + L + DIH++ SLLK + R L PL T++L +F+ A + + +
Sbjct: 52 KEKFLRVKTVPLLSKV---DDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDN 108
Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
+ M + V +LP + TL +L+ HL RVA T M N+A V+ P ++
Sbjct: 109 SIAAMYQAVGELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTIVAHAVPNP 167
Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIFDKK 233
V LQ + Q V E L+ + +
Sbjct: 168 DPVTMLQDIKRQPKVVERLLSLPLEYWSQF 197
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition
state, gene regulation/signaling protein complex; HET:
GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A
2ngr_B*
Length = 242
Score = 177 bits (451), Expect = 1e-55
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 9/154 (5%)
Query: 84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
+ ++ D ++H A +LK + RELP PL T+ LY VG + +
Sbjct: 97 QQKYNMGLPVDFDQY----NELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDE-SQ 151
Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
++ + ++ LP +Y+ L +L L +++AH D+ MT N+A+V+ PNLL K+
Sbjct: 152 RVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD--- 208
Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIFDKKNPRA 237
L+ + T+FL+ + +F +P
Sbjct: 209 -AAITLKAINPINTFTKFLLDHQGELFPSPDPSG 241
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 183 bits (465), Expect = 2e-55
Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 5/148 (3%)
Query: 84 RHTFDEDR-IPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQ 142
+ FD D D+ + +DI+ + LK+YFR+LP PL TY Y F+ + +
Sbjct: 320 KMAFDRDGEKADI--SVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPD 377
Query: 143 DQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
+QL + E ++ LPP H TL YL+ HL RV H + M A N+ IV+ P L+R EL+
Sbjct: 378 EQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELD 437
Query: 203 YGGVAALQGVGVQAVVTEFLVVYYAAIF 230
+AAL + Q +V E L+ +F
Sbjct: 438 --AMAALNDIRYQRLVVELLIKNEDILF 463
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase,
transition state, GAP; HET: GDP; 1.65A {Homo sapiens}
SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Length = 198
Score = 174 bits (444), Expect = 3e-55
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 9/147 (6%)
Query: 84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
+ ++ D + +H A +LK + RELP PL T+ LY VG + +
Sbjct: 61 QQKYNMGLPVDFDQYN----ALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDE-SQ 115
Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
++ + ++ LP +Y+ L +L L +++AH D+ MT N+A+V+ PNLL K+
Sbjct: 116 RVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD--- 172
Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIF 230
L+ + T+FL+ + +F
Sbjct: 173 -AAITLKAINPINTFTKFLLDHQGELF 198
>3msx_B RHO GTPase-activating protein 20; protein-proten complex,
transition state, protein BI; HET: GDP; 1.65A {Homo
sapiens}
Length = 201
Score = 166 bits (423), Expect = 4e-52
Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 6/147 (4%)
Query: 84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
+ + L + I +AS+LK + R +P + + LY +V + Q ++
Sbjct: 61 KEKLNSGVEVHLDCES-----IFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEE 115
Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
++ ++ +++LP + L YL G L + H MTA N+A+ AP++L
Sbjct: 116 KINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPA-SS 174
Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIF 230
+ +++ +FL+ IF
Sbjct: 175 SPELENEFTKKVSLLIQFLIENCLRIF 201
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase,
tpase activating protein, CDC42, phosphoinositide
3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP:
a.116.1.1
Length = 216
Score = 162 bits (411), Expect = 4e-50
Identities = 29/151 (19%), Positives = 61/151 (40%), Gaps = 13/151 (8%)
Query: 84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
R D D + D + D+H +A K Y +LPNP+ +Y + + + +
Sbjct: 59 RQLLDCDT----PSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSE 114
Query: 144 Q-LTQMRETVE--KLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
+ + +++ + +P ++ TL+YL+ H +++ K + AR ++ +++P L R
Sbjct: 115 EYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSA 174
Query: 201 LEYGGVAALQGVGVQAVVTEFLVVYYAAIFD 231
V E L+
Sbjct: 175 AS------SDNTENLIKVIEILISTEWNERQ 199
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium,
GTPase activation, SGC, alternative splicing, cytoplasm,
phosphoprotein; 2.30A {Homo sapiens}
Length = 228
Score = 162 bits (411), Expect = 6e-50
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
R + Y Q + VA +LK YFR+LP PL T +L +F+ Q
Sbjct: 71 RQMNEGAIDCVNYEG----QSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQ 126
Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
+L ++ + LP + L+ L+ LS V A + MT N+A+ AP+L L+
Sbjct: 127 RLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLK 185
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics
consortium, GTPase activation, phosphoprotein,
polymorphism hydrolase activator, SGC; 2.30A {Homo
sapiens}
Length = 271
Score = 157 bits (398), Expect = 2e-47
Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 8/148 (5%)
Query: 84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
++ D +A LLK +FRELP P+ L+ + + A Q ++
Sbjct: 117 KNKVDHGE------GCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGT-EE 169
Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
+ L L Y L V+ + M + N+A+++APNLL+ E
Sbjct: 170 KNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHE 229
Query: 204 G-GVAALQGVGVQAVVTEFLVVYYAAIF 230
+ + +QA V + L+ Y + I
Sbjct: 230 KMSSNTEKKLRLQAAVVQTLIDYASDIG 257
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural
genomics consortium, SGC, transferase; 2.09A {Homo
sapiens}
Length = 214
Score = 144 bits (364), Expect = 5e-43
Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 9/144 (6%)
Query: 94 DLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVE 153
D D D ++A +K + LP PL T + A++++
Sbjct: 72 DWSLSDVDQWDTAALADGIKSFLLALPAPLVTPEASAEARRALREA---AGPVGPALEPP 128
Query: 154 KLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYG------GVA 207
LP TL +L+ HL RVA G R + + P LLR
Sbjct: 129 TLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPLLLRAPPPPSSPPPGGAPDG 188
Query: 208 ALQGVGVQAVVTEFLVVYYAAIFD 231
+ A++ E L+ + +
Sbjct: 189 SEPSPDFPALLVEKLLQEHLEEQE 212
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1,
RAB gtpases, APPL1, endocytic PATH golgi complex,
hydrolase-protein binding complex; 2.30A {Homo sapiens}
PDB: 2qv2_A
Length = 366
Score = 133 bits (336), Expect = 2e-37
Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 12/140 (8%)
Query: 84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
D +TI HSVA L ++ LP P+ Y+LY + +
Sbjct: 234 IDCLDTS------IPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYD----- 282
Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
R+ + +LP H YL+ L + + + A +A ++ LLR
Sbjct: 283 -PRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPPNLM 341
Query: 204 GGVAALQGVGVQAVVTEFLV 223
+ FL+
Sbjct: 342 ARQTPSDRQRAIQFLLGFLL 361
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 5e-04
Identities = 41/258 (15%), Positives = 66/258 (25%), Gaps = 100/258 (38%)
Query: 2 SDQQIYMK----RL-----LTKYLERLSTIAGSLIN----CGPVLSWMELD-----NRGR 43
+D Q++ K RL L + L L LI+ G +W+ LD
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK--TWVALDVCLSYKVQC 178
Query: 44 RLLGKCFW----------------NSLSHFFMPEECPLGDQEVSL--------------- 72
++ K FW L + P D ++
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 73 -------------------------ISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHS 107
+SC L TR D + T +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 108 V----------ASLLKMYFRELPNPLCTYQ-LYHSFVGAVQQSKL----------QDQLT 146
L ++LP + T S + + L D+LT
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 147 QMRE-TVEKLPPPHYRTL 163
+ E ++ L P YR +
Sbjct: 357 TIIESSLNVLEPAEYRKM 374
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.024
Identities = 30/176 (17%), Positives = 51/176 (28%), Gaps = 62/176 (35%)
Query: 46 LGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLP---LCITRHTFDEDRIPDLYT----- 97
L + F L P E D E + + L L + ++
Sbjct: 33 LQEQFNKILPE---PTEGFAADDEPT--TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC 87
Query: 98 ----DDTIVQ--DIHSVAS---------------LLKMYF-------RELPNPLC----- 124
++ ++ DIH++A+ L+K Y R
Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 125 -----TYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAA 175
QL F G Q D ++R+ Y+T L+G L + +A
Sbjct: 148 AVGEGNAQLVAIFGG---QGNTDDYFEELRDL--------YQTYHVLVGDLIKFSA 192
Score = 32.3 bits (73), Expect = 0.15
Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 46/167 (27%)
Query: 94 DLYTDDTIVQDI------HSVA----SLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
DLY QD+ H S+L + P L + F G + ++
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDI-VINNPVNLTIH-----FGGEKGKRIREN 1687
Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDK-----T-----GMTARNVAIVWAP 193
+ ET+ + + + H + +K T +T A
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF--- 1744
Query: 194 NLLRCKEL-------------EYGGVAALQGV-GVQAVVTEFLVVYY 226
L+ K L EY +A+L V ++++V VV+Y
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE---VVFY 1788
Score = 29.6 bits (66), Expect = 0.99
Identities = 54/308 (17%), Positives = 90/308 (29%), Gaps = 107/308 (34%)
Query: 12 LTKYLERLSTIAGSLIN---CGPVLSWMELDNRGRRLLGKCFWNSL-SHFFMPEEC-PLG 66
L YL+ + + L+ SW R+ + F+ + + P P
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 67 DQEVSL---ISCPSLPLCITRHTFD--EDRI-------PD-------LY-TDDTIVQDIH 106
E SL PS L I+ T + +D + P L +V
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV---- 378
Query: 107 SVA----SL--LKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEK--LP-- 156
V+ SL L + R+ P + QS++ ++ + LP
Sbjct: 379 -VSGPPQSLYGLNLTLRKAKAP-----------SGLDQSRI--PFSERKLKFSNRFLPVA 424
Query: 157 -PPH--Y--RTLEYLIGHLSR--VAAHGD---------KTGMTARNV----------AIV 190
P H + + L + V+ + G R + I+
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Query: 191 -----WAPNLLRCKE---LEYG-----GVAAL-----QGVGVQAVVTEFLVVYYAAIFDK 232
W + K L++G G+ L G GV+ +V A D
Sbjct: 485 RLPVKW-ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIV--------AGTLD- 534
Query: 233 KNPRASVG 240
NP G
Sbjct: 535 INPDDDYG 542
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 32.0 bits (72), Expect = 0.14
Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 8/107 (7%)
Query: 1 MSDQQIYMKRLLTKYLERLSTIAGSLINCGPVLSWMELDNRGRRLLGKCFWNSLSHFFMP 60
+ + + L +++ T + GP+ ++ + +L F
Sbjct: 205 ILNHENIKVDLQREFIVEERTHYDHVFYSGPLDAFYGYQYGRLG------YRTLD--FKK 256
Query: 61 EECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHS 107
Q ++++ S+ + TR T + P D ++ +S
Sbjct: 257 FTYQGDYQGCAVMNYCSVDVPYTRITEHKYFSPWEQHDGSVCYKEYS 303
>3cex_A Uncharacterized protein; structural genomics, EF_3021, PSI-2,
structure initiative, midwest center for structural
genomic unknown function; 2.00A {Enterococcus faecalis}
Length = 172
Score = 28.8 bits (64), Expect = 1.2
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 12/45 (26%)
Query: 141 LQDQLTQMRETVEKL------------PPPHYRTLEYLIGHLSRV 173
+ L + E E+ P P +++ +L+ H +R
Sbjct: 10 SSETLDRAHERFEETLAQMTVAEANTMPAPLIKSVTWLMWHTARE 54
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C
membrane protein, baculovirus expression system,
glycoprote membrane; 10.00A {Rattus norvegicus}
Length = 340
Score = 28.6 bits (64), Expect = 1.8
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 204 GGVAALQGVGVQAVVTEFLV-VYYAAIFDKKNPRAS 238
G + A G+ V+ ++T LV +A+ DK+
Sbjct: 169 GNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTG 204
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional
crystal, electron diffraction, electron microscopy,
membrane protein; HET: PEE; 2.80A {Rattus norvegicus}
PDB: 2d57_A
Length = 301
Score = 28.5 bits (64), Expect = 2.0
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 204 GGVAALQGVGVQAVVTEFLV-VYYAAIFDKKNPRASVG 240
G + A G+ V+ ++T LV +A+ DK+
Sbjct: 130 GNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV 167
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.2
Identities = 5/22 (22%), Positives = 10/22 (45%), Gaps = 5/22 (22%)
Query: 103 QDIHSVASLLKMYFRELPN--P 122
Q + + + LK+Y + P
Sbjct: 20 QALKKLQASLKLY---ADDSAP 38
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris,
coiled-coil, structur genomics, PSI-2, protein structure
initiative; 2.00A {Xanthomonas campestris PV}
Length = 78
Score = 26.7 bits (59), Expect = 2.3
Identities = 8/39 (20%), Positives = 11/39 (28%), Gaps = 15/39 (38%)
Query: 137 QQSKLQDQLTQMRETVEKL---------------PPPHY 160
+ +R +E L PPPHY
Sbjct: 40 ARLTGARNAELIRHLLEDLGKVRSTLFADAADEPPPPHY 78
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport
protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A
1z98_A 2b5f_A
Length = 304
Score = 27.7 bits (62), Expect = 3.0
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 204 GGVAALQGVGVQAVVTEFLV-VYYAAIFDKKNPRAS 238
G +G + + T LV ++A K++ R S
Sbjct: 180 LGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDS 215
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 158
Score = 27.4 bits (60), Expect = 3.1
Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 15/101 (14%)
Query: 38 LDNRGRRLLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYT 97
+G+ L K + D+E + + + + R L
Sbjct: 8 FSRQGKLRLQKWY------------LATSDKERKKMVRELMQVVLAR---KPKMCSFLEW 52
Query: 98 DDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQ 138
D V + N L T +L H +V + +
Sbjct: 53 RDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDK 93
>2j9o_A TLL2115 protein; penicillin-binding protein, hydrolase, lactamase,
thioestera DD-peptidase; 1.50A {Synechococcus elongatus}
PDB: 2jbf_A* 2j7v_A 2j8y_A*
Length = 298
Score = 27.0 bits (60), Expect = 5.6
Identities = 6/21 (28%), Positives = 7/21 (33%), Gaps = 3/21 (14%)
Query: 177 GDKTGM--TARN-VAIVWAPN 194
KTG +V PN
Sbjct: 217 AHKTGDIGIVVGDAGMVDMPN 237
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane
protein; HET: BOG; 1.15A {Komagataella pastoris} PDB:
2w1p_A*
Length = 279
Score = 27.0 bits (60), Expect = 5.7
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 204 GGVAALQGVGVQAVVTEFLV-VYYAAIFDKKNPRASVG 240
GG + +G+ ++A T L +K
Sbjct: 164 GGASRTRGLFLEAFGTAILCLTVLMLAVEKHRATWFAP 201
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P
protein structure initiative, center for structures of
MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli}
PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A*
3nka_A* 3nkc_A*
Length = 234
Score = 26.8 bits (60), Expect = 5.8
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 204 GGVAALQGVGVQAVVTEFLV-VYYAAIFDKKNPRASVG 240
GG + L + V+ V++ + V + A DK P
Sbjct: 130 GGYSMLSALVVELVLSAGFLLVIHGAT-DKFAPAGFAP 166
>3cjm_A Putative beta-lactamase; NP_815223.1, structural genomics, J center
for structural genomics, JCSG, protein structure INI
PSI-2, hydrolase; HET: MSE; 1.50A {Enterococcus
faecalis}
Length = 282
Score = 26.7 bits (59), Expect = 6.4
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 17/66 (25%)
Query: 134 GAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHL--SRVAAHGDKTGM--TARN-VA 188
+ Q M+++V E + +VA K G + +
Sbjct: 191 EKATKPDYQAIYDSMKQSV---------FHERMETPTTQGKVA---HKIGSYDEFIHDMG 238
Query: 189 IVWAPN 194
I+ P+
Sbjct: 239 ILETPH 244
>2atz_A H. pylori predicted coding region HP0184; structural genomics,
PSI, protein struc initiative, midwest center for
structural genomics, MCSG; HET: DGT; 2.00A
{Helicobacter pylori} SCOP: d.264.1.3
Length = 180
Score = 26.5 bits (58), Expect = 6.5
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 11 LLTKYLERLSTIAGSLINCGPVLSWMELDNRGRRLLGKCFWNSLSHFFMPE 61
L+ K+L+R IA +LI + + D GR + F++ E
Sbjct: 49 LIQKHLKREIEIAHNLILRNDKVENIVFDYNGRN--PERFYHKAQLLLREE 97
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein
structure initiative, center for structures of MEMB
proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo
sapiens}
Length = 223
Score = 26.4 bits (59), Expect = 7.0
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 204 GGVAALQGVGVQAVVTEFLV-VYYAAIFDKKNPRASVG 240
G + A G+ V+ ++T LV +A+ K+
Sbjct: 121 GNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSI 158
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel,
structu genomics, PSI-2, protein structure initiative;
2.01A {Agrobacterium tumefaciens str}
Length = 256
Score = 26.5 bits (59), Expect = 7.6
Identities = 5/37 (13%), Positives = 15/37 (40%)
Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIFDKKNPRASVG 240
GG + + + ++ ++T F ++ + P
Sbjct: 153 GGYSLVSALLIEIILTAFFLIVILGSTHGRVPAGFAP 189
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane
helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1
PDB: 1h6i_A 1fqy_A 1ih5_A
Length = 271
Score = 26.2 bits (58), Expect = 8.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIFDKKNP 235
GV + QG+G++ + T LV+ A D++
Sbjct: 133 PGVNSGQGLGIEIIGTLQLVLCVLATTDRRRR 164
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.425
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,720,115
Number of extensions: 214818
Number of successful extensions: 408
Number of sequences better than 10.0: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 39
Length of query: 240
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 149
Effective length of database: 4,160,982
Effective search space: 619986318
Effective search space used: 619986318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.7 bits)