RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3002
(240 letters)
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 191
Score = 117 bits (294), Expect = 2e-33
Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Query: 82 ITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKL 141
+ D + T+ +I ++ S LK Y R LP PL YQ SF+ A +
Sbjct: 41 LLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQ 100
Query: 142 QDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKEL 201
+ +++++ V +LP + + L L+ HL++VA + + MT N+ +V+ P LLR +E
Sbjct: 101 ESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQE- 159
Query: 202 EYGGVAALQGVGVQAVVTEFLVVYYAAIFD 231
VAA+ + Q +V E L+ + IF+
Sbjct: 160 --ETVAAIMDIKFQNIVIEILIENHEKIFN 187
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 196
Score = 110 bits (276), Expect = 8e-31
Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 3/147 (2%)
Query: 84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
+ FD D + + DI+ + LK+YFR+LP P+ TY Y F+ A + S +
Sbjct: 53 KMAFDRDGEKADISANVY-PDINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADE 111
Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
+L + E + LPP HY TL YL+ HL +V + M A N+ IV+ P L+R E
Sbjct: 112 RLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMRPPEDS- 170
Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIF 230
+ L + Q ++ + L+ +F
Sbjct: 171 -TLTTLHDMRYQKLIVQILIENEDVLF 196
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 196
Score = 104 bits (259), Expect = 3e-28
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 9/147 (6%)
Query: 84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
+ ++ D + +H A +LK + RELP PL T+ LY VG + +
Sbjct: 59 QQKYNMGLPVDFDQYN----ALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDE-SQ 113
Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
++ + ++ LP +Y+ L +L L +++AH D+ MT N+A+V+ PNLL K+
Sbjct: 114 RVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD--- 170
Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIF 230
L+ + T+FL+ + +F
Sbjct: 171 -AAITLKAINPINTFTKFLLDHQGELF 196
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 184
Score = 99.8 bits (248), Expect = 9e-27
Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 13/143 (9%)
Query: 84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
R D D + D + D+H +A K Y +LPNP+ +Y + + + +
Sbjct: 48 RQLLDCDT----PSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSE 103
Query: 144 QLTQMRETV---EKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
+ Q+ + + +P ++ TL+YL+ H +++ K + AR ++ +++P L R
Sbjct: 104 EYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSA 163
Query: 201 LEYGGVAALQGVGVQAVVTEFLV 223
V E L+
Sbjct: 164 AS------SDNTENLIKVIEILI 180
>d1jv2a4 b.69.8.1 (A:1-438) Integrin alpha N-terminal domain {Human
(Homo sapiens), isoform V [TaxId: 9606]}
Length = 438
Score = 31.9 bits (71), Expect = 0.054
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 19 LSTIAGSLINCGPVLSWMELDNRGRRLLGKCFWNSLSHFFMPEEC 63
+ + ++ C P+ W + R +G CF + C
Sbjct: 98 VRSKQDKILACAPLYHWRTEMKQEREPVGTCFLQDGTKTVEYAPC 142
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH
{Bacillus subtilis [TaxId: 1423]}
Length = 83
Score = 28.2 bits (63), Expect = 0.25
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 145 LTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAI---VWAPNLLR-CKE 200
L ++ KLPP + +Y++ H + T ++ ++R CK
Sbjct: 6 LAIIQSMKHKLPPSERKLADYILAHPHKAIE------STVNEISALANSSDAAVIRLCKS 59
Query: 201 LEYGGVAALQ 210
L G L+
Sbjct: 60 LGLKGFQDLK 69
>d2atza1 d.264.1.3 (A:3-178) Hypothetical protein HP0184
{Helicobacter pylori [TaxId: 210]}
Length = 176
Score = 26.3 bits (58), Expect = 2.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 11 LLTKYLERLSTIAGSLINCGPVLSWMELDNRGR 43
L+ K+L+R IA +LI + + D GR
Sbjct: 47 LIQKHLKREIEIAHNLILRNDKVENIVFDYNGR 79
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 477
Score = 25.3 bits (55), Expect = 7.3
Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 96 YTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFV--GAVQQSKLQDQLTQMRETVE 153
Y+D+ + QDI ++ +L+ ++E L ++ Y + + + S + ++
Sbjct: 329 YSDEELRQDISNLKEILENEYQE----LTSFDEYVAELDSKLLCWSPPHVDNGFWSDNID 384
Query: 154 KLPPPHYRTLEYLIGHLSRVAAHGDKT 180
+ +Y+ LI L +GD
Sbjct: 385 EFKKDNYKIFRQLIELLQAKVRNGDVN 411
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.425
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 907,921
Number of extensions: 40893
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 9
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.0 bits)