BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3003
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 3 QLQMGIPYITDCVLGEIEKLGQKYKVALRIIKDPRFERIPCMHKGTYA 50
Q + I ++ C +E G YK+A + +P R+ H+G YA
Sbjct: 706 QPKSKITHLVFCTTSGVEMPGADYKLANLLGLEPSVRRVMLYHQGCYA 753
>pdb|2KXI|A Chain A, Solution Nmr Structure Of The Apoform Of Nare (Nmb1343)
Length = 153
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 17 GEIEKLGQKYKVALR----IIKDPRFERIPCMHKGTYADDCIVNRVTQHKCYIVATCDKD 72
G+++ G K +VA+R D + P + YA + CYI T DK+
Sbjct: 19 GQLKPKGNKAEVAIRYDGKFKYDGKATHGPSVKNAVYAHQ--IETGLYDGCYISTTTDKE 76
Query: 73 LKRRIRKVPGVPIMYI 88
+ ++ G+ YI
Sbjct: 77 IAKKFATSSGIENGYI 92
>pdb|3W3S|A Chain A, Crystal Structure Of A. Aeolicus Trnasec In Complex With
M. Kandleri Serrs
Length = 527
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 20 EKLGQKYKVALRIIKDPRFERI 41
E+LG+K++V +R +K PR+E +
Sbjct: 86 ERLGRKHRVGVRDLKIPRYEVV 107
>pdb|3OH0|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Triphosphate
pdb|3OH1|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Diphosphate-Galacturonic Acid
pdb|3OH2|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Diphosphate-Galactose
pdb|3OH3|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'-Diphosphate -Arabinose
pdb|3OH4|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'-Diphosphate Glucose
Length = 641
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 72 DLKRRIRKVPGVPIMYISQHRYTIERMPDAYG 103
+L+RR K G+P+ Y SQ T+ + DA+G
Sbjct: 462 ELQRRRLKAIGLPLFYSSQPEVTVAK--DAFG 491
>pdb|3OGZ|A Chain A, Protein Structure Of Usp From L. Major In Apo-Form
Length = 630
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 72 DLKRRIRKVPGVPIMYISQHRYTIERMPDAYG 103
+L+RR K G+P+ Y SQ T+ + DA+G
Sbjct: 462 ELQRRRLKAIGLPLFYSSQPEVTVAK--DAFG 491
>pdb|2PDO|A Chain A, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|B Chain B, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|C Chain C, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|D Chain D, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|E Chain E, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|F Chain F, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|G Chain G, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|H Chain H, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
Length = 144
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 3 QLQMGIPYITDCVLGEIEKLGQKYKVAL----RIIKDPRF 38
++Q+ +P D VLG E+LG ++ L R+I+D +
Sbjct: 105 KIQINVPEDNDXVLGXYERLGYEHADVLSLGKRLIEDEEY 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.143 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,174,496
Number of Sequences: 62578
Number of extensions: 110006
Number of successful extensions: 241
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 8
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)