BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3003
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RFQ0|FCF1_PONAB rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2
SV=1
Length = 198
Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 83/99 (83%), Positives = 90/99 (90%)
Query: 8 IPYITDCVLGEIEKLGQKYKVALRIIKDPRFERIPCMHKGTYADDCIVNRVTQHKCYIVA 67
IP ITDCV+ EIEKLGQKY+VALRI KDPRFER+PC HKGTYADDC+V RVTQHKCYIVA
Sbjct: 99 IPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVA 158
Query: 68 TCDKDLKRRIRKVPGVPIMYISQHRYTIERMPDAYGAPK 106
T D+DLKRRIRK+PGVPIMYIS HRY IERMPD YGAP+
Sbjct: 159 TVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDYGAPR 197
>sp|Q9Y324|FCF1_HUMAN rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2
SV=1
Length = 198
Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 83/99 (83%), Positives = 90/99 (90%)
Query: 8 IPYITDCVLGEIEKLGQKYKVALRIIKDPRFERIPCMHKGTYADDCIVNRVTQHKCYIVA 67
IP ITDCV+ EIEKLGQKY+VALRI KDPRFER+PC HKGTYADDC+V RVTQHKCYIVA
Sbjct: 99 IPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVA 158
Query: 68 TCDKDLKRRIRKVPGVPIMYISQHRYTIERMPDAYGAPK 106
T D+DLKRRIRK+PGVPIMYIS HRY IERMPD YGAP+
Sbjct: 159 TVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDYGAPR 197
>sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog OS=Bos taurus GN=FCF1 PE=2
SV=1
Length = 198
Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 83/99 (83%), Positives = 90/99 (90%)
Query: 8 IPYITDCVLGEIEKLGQKYKVALRIIKDPRFERIPCMHKGTYADDCIVNRVTQHKCYIVA 67
IP ITDCV+ EIEKLGQKY+VALRI KDPRFER+PC HKGTYADDC+V RVTQHKCYIVA
Sbjct: 99 IPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVA 158
Query: 68 TCDKDLKRRIRKVPGVPIMYISQHRYTIERMPDAYGAPK 106
T D+DLKRRIRK+PGVPIMYIS HRY IERMPD YGAP+
Sbjct: 159 TVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDYGAPR 197
>sp|Q9CTH6|FCF1_MOUSE rRNA-processing protein FCF1 homolog OS=Mus musculus GN=Fcf1 PE=2
SV=2
Length = 198
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 90/99 (90%)
Query: 8 IPYITDCVLGEIEKLGQKYKVALRIIKDPRFERIPCMHKGTYADDCIVNRVTQHKCYIVA 67
IP ITDCV+ EIEKLGQK++VALRI KDPRF+R+PC HKGTYADDC+V RVTQHKCYIVA
Sbjct: 99 IPCITDCVMAEIEKLGQKFRVALRIAKDPRFDRLPCTHKGTYADDCLVQRVTQHKCYIVA 158
Query: 68 TCDKDLKRRIRKVPGVPIMYISQHRYTIERMPDAYGAPK 106
T D+DLKRRIRK+PGVPIMY+S HRY IERMPD YGAP+
Sbjct: 159 TVDRDLKRRIRKIPGVPIMYLSNHRYNIERMPDDYGAPR 197
>sp|Q55GM5|FCF1_DICDI rRNA-processing protein FCF1 homolog OS=Dictyostelium discoideum
GN=fcf1 PE=3 SV=1
Length = 194
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 65/93 (69%), Positives = 81/93 (87%)
Query: 8 IPYITDCVLGEIEKLGQKYKVALRIIKDPRFERIPCMHKGTYADDCIVNRVTQHKCYIVA 67
IPYI+DCV EIE+LG K+KVAL+I KDPRF+R+ C HKGTYADDCI+NR+T H+ +IVA
Sbjct: 99 IPYISDCVAAEIERLGSKFKVALKISKDPRFQRLTCSHKGTYADDCIINRITMHRMFIVA 158
Query: 68 TCDKDLKRRIRKVPGVPIMYISQHRYTIERMPD 100
TCD DL+RRIRK+PGVPI+Y+ +YT+ERMPD
Sbjct: 159 TCDADLRRRIRKIPGVPIVYLKGKKYTVERMPD 191
>sp|O13610|FCF1_SCHPO rRNA-processing protein fcf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=fcf1 PE=3 SV=1
Length = 192
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/94 (64%), Positives = 79/94 (84%)
Query: 8 IPYITDCVLGEIEKLGQKYKVALRIIKDPRFERIPCMHKGTYADDCIVNRVTQHKCYIVA 67
IP I+DCV+ E+EKLG +Y++ALRI KD RFER+PC HKGTYADDCIV RV QHKCY+VA
Sbjct: 97 IPCISDCVMAELEKLGIRYRIALRIAKDERFERLPCTHKGTYADDCIVQRVMQHKCYLVA 156
Query: 68 TCDKDLKRRIRKVPGVPIMYISQHRYTIERMPDA 101
T DK+LK+RIRK+PG+PI+ ++ H+ +ER+ D
Sbjct: 157 TNDKNLKQRIRKIPGIPILSVANHKIRVERLVDV 190
>sp|Q05498|FCF1_YEAST rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=FCF1 PE=1 SV=1
Length = 189
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 58/94 (61%), Positives = 77/94 (81%)
Query: 9 PYITDCVLGEIEKLGQKYKVALRIIKDPRFERIPCMHKGTYADDCIVNRVTQHKCYIVAT 68
P ITDCV+ E+EKLG KY++AL++ +DPR +R+ C HKGTYADDC+V+RV QHKCYIVAT
Sbjct: 96 PLITDCVMAELEKLGPKYRIALKLARDPRIKRLSCSHKGTYADDCLVHRVLQHKCYIVAT 155
Query: 69 CDKDLKRRIRKVPGVPIMYISQHRYTIERMPDAY 102
D LK+RIRK+PG+P+M + H Y IE++PD +
Sbjct: 156 NDAGLKQRIRKIPGIPLMSVGGHAYVIEKLPDVF 189
>sp|Q9BRU9|UTP23_HUMAN rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1
SV=2
Length = 249
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 12 TDCVLGEIEKLGQKYKVALRIIKDPRFERIPCMHKGTYADDCIVNRVTQHK--CYIVATC 69
T CVL E+E LG+ A I + + P +C+++ V + Y VAT
Sbjct: 62 TRCVLKELETLGKDLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEEGNPHHYFVATQ 121
Query: 70 DKDLKRRIRKVPGVPIMYISQHRYTIER 97
D++L +++K PGVP+M+I Q+ +++
Sbjct: 122 DQNLSVKVKKKPGVPLMFIIQNTMVLDK 149
>sp|Q9CX11|UTP23_MOUSE rRNA-processing protein UTP23 homolog OS=Mus musculus GN=Utp23 PE=2
SV=1
Length = 249
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 12 TDCVLGEIEKLGQKYKVALRIIKDPRFERIPCMHKGTYADDCIVNRVTQHK--CYIVATC 69
T CVL E+E LG++ A I + + P +C+++ V + Y VAT
Sbjct: 62 TRCVLKELETLGKELYGAKLIAQKCQVRNCPHFKSPVSGSECLLSMVDEGNPHHYFVATQ 121
Query: 70 DKDLKRRIRKVPGVPIMYISQHRYTIER 97
D++L ++++ PG+P+M+I Q+ +++
Sbjct: 122 DQNLSVKVKRTPGIPLMFIIQNTIVLDK 149
>sp|O74862|UTP23_SCHPO rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=utp23 PE=3 SV=1
Length = 260
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
Query: 9 PYITDCVLGEIEKLGQKYKVALRIIKDPRFERIPCMH--KGTYADDCI-----VNRVTQH 61
P IT C + ++ + K +RI K FER C H + +CI +N +H
Sbjct: 59 PMITQCCIRQLYSKSDELKQEIRIAKS--FERRRCGHIDEALSPSECIQSVVNINGRNKH 116
Query: 62 KCYIVATCDKDLKRRIRKVPGVPIMYISQHRYTIE 96
+ Y+VAT D +L++ +R VPGVP++Y+ + +E
Sbjct: 117 R-YVVATQDPELRQALRSVPGVPLIYMKRSVVILE 150
>sp|Q08DU1|UTP23_BOVIN rRNA-processing protein UTP23 homolog OS=Bos taurus GN=UTP23 PE=2
SV=1
Length = 248
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 12 TDCVLGEIEKLGQKYKVALRIIKDPRFERIPCMHKGTYADDCIVNRVTQHK--CYIVATC 69
T CVL E+E LG+ A I + + P +C+++ V Y +AT
Sbjct: 62 TRCVLKELETLGKDLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEDGNPHHYFLATQ 121
Query: 70 DKDLKRRIRKVPGVPIMYISQHRYTIER 97
D++L +++K PG+P+M+I Q+ +++
Sbjct: 122 DQNLSMKVKKKPGIPLMFIIQNTIVLDK 149
>sp|Q12339|UTP23_YEAST rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=UTP23 PE=1 SV=1
Length = 254
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 13/77 (16%)
Query: 37 RFERIPCMHKGTYAD-----DCI-----VNRVTQHKCYIVATCDKDLKRRIRKVPGVPIM 86
+FER C H ++ D +CI ++ +H+ Y+VA+ D DL+R++R VPGVP++
Sbjct: 83 QFERRRCNH--SFKDPKSPAECIESVVNISGANKHR-YVVASQDIDLRRKLRTVPGVPLI 139
Query: 87 YISQHRYTIERMPDAYG 103
++++ +E + A
Sbjct: 140 HLTRSVMVMEPLSTASA 156
>sp|Q58716|VAPC4_METJA Putative ribonuclease VapC4 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=vapC4 PE=3 SV=1
Length = 131
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 45 HKGTYADDCIVNRVTQHKCYIVATCDKDLKRRIRKVPGVPIMYISQHRY 93
+ YAD+ I+N +++ IVAT DK+LK ++ + +P+M + Q +Y
Sbjct: 77 YTANYADEAILNYAKENENVIVATNDKELKEKLME-NNIPVMVVRQKKY 124
>sp|Q9WZE6|FLIM_THEMA Flagellar motor switch protein FliM OS=Thermotoga maritima (strain
ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=fliM PE=1
SV=1
Length = 328
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 3 QLQMGIPYITDCVLGEIEKLGQKYKVALRIIKD--PRFERIPCMHKGTYA 50
+ ++ + I D +G++ +LG YK +RI + P+F IP + KG YA
Sbjct: 265 ETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRGIPGVFKGKYA 314
>sp|Q54EW2|Y9130_DICDI Putative bifunctional amine oxidase DDB_G0291301 OS=Dictyostelium
discoideum GN=DDB_G0291301 PE=1 SV=1
Length = 1080
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 19 IEKLGQKYKV--ALRIIKDPRFERIPCMHKGTYADD 52
+E+LG +YKV A I+++ F IP H+G +A D
Sbjct: 118 LERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPD 153
>sp|Q5TUF1|SRRT_ANOGA Serrate RNA effector molecule homolog OS=Anopheles gambiae GN=Ars2
PE=3 SV=3
Length = 967
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 9 PYITDCVLGEIEKLGQKYKVALRI-IKDPRFER-------IPCMHKGTYADDCI-VNRVT 59
P IT E+E + ++Y LR+ I DP ER + + + C +N +
Sbjct: 533 PSITK---AEVEAMCRRYNGFLRVAIADPLLERRWFRRGWVTFKREVNIKEICWNLNNIR 589
Query: 60 QHKCYIVATCDKDLKRRIRKVPGV 83
C + A +KDL RR+R V G+
Sbjct: 590 LRDCELGAIVNKDLSRRVRPVNGI 613
>sp|P38829|YHS2_YEAST MIP18 family protein YHR122W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YHR122W PE=1 SV=1
Length = 231
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 9 PYITDCVLGEIEKLGQKYKVALRIIKDPRFERIPCMHKGTYADDCIVNRVTQHKCYIVAT 68
P IT C L + LG +V L PRF + KGT+ + VN+ K + A
Sbjct: 156 PTITHCSLATLIGLG--IRVRLERSLPPRFRITILLKKGTHDSENQVNKQLNDKERVAAA 213
Query: 69 CDKD 72
C+ +
Sbjct: 214 CENE 217
>sp|Q17FR9|SRRT_AEDAE Serrate RNA effector molecule homolog OS=Aedes aegypti GN=Ars2 PE=3
SV=1
Length = 937
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 9 PYITDCVLGEIEKLGQKYKVALRI-IKDPRFERIPCMHKG--TYADDCIV-------NRV 58
P IT E+E + ++Y LR+ I DP ER +G T+ D + N +
Sbjct: 524 PSITK---AEVEAMCKRYNGFLRVAIADPLLER-RWFRRGWVTFRRDVNIKEICWNLNNI 579
Query: 59 TQHKCYIVATCDKDLKRRIRKVPGV 83
C + A +KDL RR+R V G+
Sbjct: 580 RLRDCELGAIVNKDLSRRVRPVNGL 604
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.143 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,326,436
Number of Sequences: 539616
Number of extensions: 1437223
Number of successful extensions: 3492
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3471
Number of HSP's gapped (non-prelim): 23
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)