Query psy3003
Match_columns 106
No_of_seqs 104 out of 439
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 23:02:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o4w_A PIN (PILT N-terminus) d 99.4 5.5E-13 1.9E-17 91.5 6.3 79 7-92 53-139 (147)
2 3ix7_A Uncharacterized protein 98.9 1.7E-09 5.7E-14 74.4 6.5 80 8-90 32-124 (134)
3 3i8o_A KH domain-containing pr 98.6 1.9E-07 6.6E-12 64.6 7.0 82 7-92 30-134 (142)
4 2dok_A Telomerase-binding prot 98.1 2.2E-06 7.7E-11 60.7 3.9 83 6-89 37-177 (186)
5 2lcq_A Putative toxin VAPC6; P 93.6 0.031 1.1E-06 38.3 2.0 78 8-89 27-122 (165)
6 8tfv_A Protein (thanatin); bac 70.0 1.8 6E-05 19.9 1.0 11 81-91 4-14 (21)
7 1wik_A Thioredoxin-like protei 64.9 4.8 0.00017 24.8 2.7 29 64-92 49-80 (109)
8 2yan_A Glutaredoxin-3; oxidore 63.6 5.8 0.0002 24.2 2.8 30 63-92 50-82 (105)
9 2lqo_A Putative glutaredoxin R 62.6 4.8 0.00016 24.7 2.3 34 63-96 32-69 (92)
10 2wci_A Glutaredoxin-4; redox-a 62.6 5.8 0.0002 26.1 2.8 30 63-92 68-100 (135)
11 2fe1_A Conserved hypothetical 62.2 4.3 0.00015 26.7 2.2 34 49-84 122-156 (156)
12 1t1v_A SH3BGRL3, SH3 domain-bi 60.8 4.9 0.00017 24.0 2.1 29 64-92 37-70 (93)
13 2ct6_A SH3 domain-binding glut 59.9 7 0.00024 24.4 2.8 30 64-93 43-83 (111)
14 2hwy_A Protein SMG5; RNA degra 58.4 7.9 0.00027 26.8 3.0 29 5-33 26-57 (164)
15 3qmx_A Glutaredoxin A, glutare 57.0 12 0.0004 22.8 3.4 30 63-92 44-77 (99)
16 2dk4_A PRE-mRNA-splicing facto 55.9 0.7 2.4E-05 28.5 -2.5 25 64-89 23-47 (76)
17 2wul_A Glutaredoxin related pr 55.8 4.8 0.00017 26.2 1.5 30 63-92 54-86 (118)
18 3gx8_A Monothiol glutaredoxin- 53.9 11 0.00037 24.0 3.0 28 65-92 54-84 (121)
19 3ipz_A Monothiol glutaredoxin- 53.6 10 0.00036 23.4 2.8 29 64-92 52-83 (109)
20 1o1z_A GDPD, glycerophosphodie 53.4 54 0.0019 22.9 7.1 77 10-91 73-154 (234)
21 3zyw_A Glutaredoxin-3; metal b 52.9 7.8 0.00027 24.3 2.1 29 64-92 50-81 (111)
22 2wem_A Glutaredoxin-related pr 51.4 12 0.00042 23.8 2.9 29 64-92 55-86 (118)
23 3h7i_A Ribonuclease H, RNAse H 50.5 8.4 0.00029 29.3 2.2 58 37-97 120-181 (305)
24 3tnd_A TRNA(FMet)-specific end 49.0 23 0.00077 22.0 3.9 33 49-86 95-129 (132)
25 1ego_A Glutaredoxin; electron 43.8 16 0.00055 20.5 2.4 20 72-91 47-67 (85)
26 1exn_A 5'-exonuclease, 5'-nucl 37.8 17 0.00059 27.1 2.2 40 37-78 117-160 (290)
27 3l49_A ABC sugar (ribose) tran 37.2 81 0.0028 21.5 5.6 54 37-91 35-95 (291)
28 3rhb_A ATGRXC5, glutaredoxin-C 36.5 13 0.00045 22.6 1.2 23 70-92 58-83 (113)
29 1pqx_A Conserved hypothetical 35.7 55 0.0019 20.2 4.0 32 69-100 37-68 (91)
30 2k1h_A Uncharacterized protein 35.7 56 0.0019 20.3 4.1 33 68-100 36-68 (94)
31 1wjk_A C330018D20RIK protein; 35.4 37 0.0013 20.3 3.2 23 69-93 55-77 (100)
32 2z9m_A Response regulator YYCF 34.1 42 0.0014 20.9 3.4 31 72-102 83-115 (120)
33 2khp_A Glutaredoxin; thioredox 33.3 37 0.0013 19.4 2.9 27 65-91 36-65 (92)
34 3uug_A Multiple sugar-binding 33.3 75 0.0026 22.2 5.0 54 37-91 33-93 (330)
35 1mzw_B U4/U6 snRNP 60KDA prote 32.9 10 0.00036 19.2 0.2 17 72-89 1-17 (31)
36 2hhc_A NODZ, nodulation fucosy 32.9 43 0.0015 24.4 3.7 18 62-79 217-234 (330)
37 3c1r_A Glutaredoxin-1; oxidize 32.8 31 0.0011 21.4 2.6 19 73-92 74-92 (118)
38 1h75_A Glutaredoxin-like prote 32.7 47 0.0016 18.3 3.2 23 68-90 34-58 (81)
39 3psh_A Protein HI_1472; substr 32.1 51 0.0017 23.7 4.0 37 51-91 77-115 (326)
40 1u6t_A SH3 domain-binding glut 31.4 40 0.0014 21.8 3.0 30 64-93 35-75 (121)
41 3e61_A Putative transcriptiona 31.3 45 0.0015 22.7 3.4 39 52-91 55-95 (277)
42 2zxj_A Transcriptional regulat 30.8 50 0.0017 21.0 3.4 27 72-98 83-111 (120)
43 3v32_B Ribonuclease ZC3H12A; r 30.8 23 0.00079 24.8 1.8 38 49-88 113-159 (185)
44 4fcu_A 3-deoxy-manno-octuloson 30.3 51 0.0018 23.4 3.7 27 62-89 43-69 (253)
45 2fvy_A D-galactose-binding per 30.0 1.3E+02 0.0045 20.5 5.8 61 30-91 25-93 (309)
46 3oam_A 3-deoxy-manno-octuloson 29.4 49 0.0017 23.1 3.4 26 63-89 44-69 (252)
47 1a76_A Flap endonuclease-1 pro 29.3 23 0.0008 26.3 1.7 45 37-89 143-187 (326)
48 1fov_A Glutaredoxin 3, GRX3; a 29.1 46 0.0016 18.3 2.7 25 67-91 33-60 (82)
49 4fe7_A Xylose operon regulator 28.9 55 0.0019 24.3 3.8 37 54-91 69-106 (412)
50 1ul1_X Flap endonuclease-1; pr 28.6 26 0.0009 26.7 1.9 45 37-89 148-192 (379)
51 1aba_A Glutaredoxin; electron 28.5 38 0.0013 19.4 2.3 24 69-92 43-75 (87)
52 3m9w_A D-xylose-binding peripl 28.2 1.4E+02 0.0048 20.6 5.7 54 37-91 32-92 (313)
53 3md9_A Hemin-binding periplasm 28.1 61 0.0021 22.2 3.7 28 60-89 59-89 (255)
54 3jy6_A Transcriptional regulat 27.4 1.5E+02 0.005 20.1 6.7 61 30-91 30-94 (276)
55 3ctg_A Glutaredoxin-2; reduced 27.3 43 0.0015 21.2 2.6 21 72-92 81-104 (129)
56 2wp8_J Exosome complex exonucl 27.0 1.7E+02 0.006 25.3 6.9 84 6-89 84-195 (977)
57 2r7a_A Bacterial heme binding 26.8 67 0.0023 22.1 3.7 34 52-89 53-89 (256)
58 3tqd_A 3-deoxy-manno-octuloson 26.8 60 0.0021 23.1 3.5 26 63-89 51-76 (256)
59 3zvk_A VAPC2, toxin of toxin-a 26.3 21 0.0007 22.2 0.8 73 7-86 32-130 (134)
60 1ilo_A Conserved hypothetical 26.2 82 0.0028 16.8 4.0 27 68-96 37-63 (77)
61 2h1c_A Trafficking protein B; 26.1 52 0.0018 20.0 2.8 32 49-86 101-134 (139)
62 3l6u_A ABC-type sugar transpor 25.9 1.3E+02 0.0043 20.5 5.0 54 37-91 38-98 (293)
63 3o74_A Fructose transport syst 25.7 97 0.0033 20.8 4.3 54 37-91 32-91 (272)
64 3qe9_Y Exonuclease 1; exonucle 25.5 35 0.0012 25.9 2.1 35 37-74 141-175 (352)
65 1kte_A Thioltransferase; redox 25.4 53 0.0018 19.2 2.6 12 80-91 66-77 (105)
66 1b43_A Protein (FEN-1); nuclea 25.3 31 0.001 25.8 1.7 45 37-89 143-187 (340)
67 3q8k_A Flap endonuclease 1; he 24.8 38 0.0013 25.5 2.2 44 37-88 148-191 (341)
68 3tb6_A Arabinose metabolism tr 24.8 1.6E+02 0.0056 19.8 6.2 54 37-91 45-108 (298)
69 2hze_A Glutaredoxin-1; thiored 24.8 53 0.0018 19.9 2.6 19 72-91 66-84 (114)
70 2izo_A FEN1, flap structure-sp 24.7 36 0.0012 25.6 2.0 45 37-89 140-184 (346)
71 2klx_A Glutaredoxin; thioredox 24.6 51 0.0017 18.7 2.4 19 72-90 45-63 (89)
72 1v8p_A Hypothetical protein PA 24.3 55 0.0019 21.7 2.7 30 49-79 114-144 (158)
73 3txy_A Isochorismatase family 24.1 52 0.0018 22.4 2.6 18 72-90 44-61 (199)
74 3hcw_A Maltose operon transcri 23.6 1.4E+02 0.0047 20.6 4.9 64 27-91 32-100 (295)
75 3kj0_B BCL-2-like protein 11; 23.4 39 0.0013 16.3 1.3 15 15-29 10-24 (27)
76 1dbq_A Purine repressor; trans 23.1 1.8E+02 0.0061 19.6 5.7 40 52-91 54-96 (289)
77 1yfb_A Transition state regula 22.4 1.1E+02 0.0039 17.1 4.4 32 68-99 25-57 (59)
78 3eef_A N-carbamoylsarcosine am 22.0 61 0.0021 21.6 2.6 18 72-90 33-50 (182)
79 3nzn_A Glutaredoxin; structura 22.0 88 0.003 18.4 3.2 22 72-93 64-88 (103)
80 3h93_A Thiol:disulfide interch 21.7 88 0.003 20.4 3.4 16 79-94 149-164 (192)
81 3hd5_A Thiol:disulfide interch 21.7 88 0.003 20.4 3.4 16 79-94 148-163 (195)
82 3ts3_A Capsid polyprotein; vir 21.7 62 0.0021 22.8 2.6 21 69-89 127-147 (208)
83 2wh6_B BCL-2-like protein 11; 21.3 31 0.0011 16.6 0.7 14 15-28 8-21 (26)
84 3q0i_A Methionyl-tRNA formyltr 21.1 1.3E+02 0.0045 22.3 4.5 48 38-87 8-68 (318)
85 3k8d_A 3-deoxy-manno-octuloson 21.0 86 0.0029 22.4 3.4 26 63-89 60-85 (264)
86 3h8q_A Thioredoxin reductase 3 20.8 70 0.0024 19.4 2.6 22 71-92 56-80 (114)
87 3msz_A Glutaredoxin 1; alpha-b 20.6 53 0.0018 18.3 1.9 11 81-91 60-70 (89)
88 1uf3_A Hypothetical protein TT 20.4 1.8E+02 0.0063 18.8 5.2 18 73-91 55-72 (228)
89 1jei_A Emerin; membrane protei 20.4 34 0.0012 19.3 0.9 16 69-85 7-22 (53)
90 3lft_A Uncharacterized protein 20.4 2.2E+02 0.0074 19.6 5.7 52 39-90 38-91 (295)
No 1
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=99.39 E-value=5.5e-13 Score=91.52 Aligned_cols=79 Identities=28% Similarity=0.463 Sum_probs=68.9
Q ss_pred ceeeecHHHHHHHHhhCc--------chHHHHhhccCCceEEEecCCCCCCHHHHHHHhhhcCCeEEEEecCHHHHHHHh
Q psy3003 7 GIPYITDCVLGEIEKLGQ--------KYKVALRIIKDPRFERIPCMHKGTYADDCIVNRVTQHKCYIVATCDKDLKRRIR 78 (106)
Q Consensus 7 ~~~~vt~cVl~EL~~Lg~--------~~~~al~~ak~~~~~~~~c~h~~~~ad~ci~~~~~~~~~~iVaTqD~~Lr~~Lr 78 (106)
.+++||.||+.||+.+.. ..+.++.+++ .++++.|+ .+ + |+||.+.+..++ ++++|+|++|+++++
T Consensus 53 ~~~~I~~~vl~EL~~~~~~~~~~~~~~~~~~~~ll~--~~~vv~~~-~~-~-D~~Ila~A~~~~-~~LvT~D~~l~~~a~ 126 (147)
T 1o4w_A 53 SRFLITASVKRELEKLEMSLRGKEKVAARFALKLLE--HFEVVETE-SE-G-DPSLIEAAEKYG-CILITNDKELKRKAK 126 (147)
T ss_dssp EEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHT--TSEEECCS-SC-S-HHHHHHHHHHHT-CEEECCCHHHHHHHH
T ss_pred CCEEEcHHHHHHHHHHHhccCcchHHHHHHHHHHHh--cCcEeeCC-CC-c-hHHHHHHHHHhC-CEEEECCHHHHHHHH
Confidence 689999999999998863 3456778888 78888887 44 6 999999998876 999999999999999
Q ss_pred cCCCccEEEEecce
Q psy3003 79 KVPGVPIMYISQHR 92 (106)
Q Consensus 79 ~i~GVPviy~~~~~ 92 (106)
.. |||++|+++++
T Consensus 127 ~~-Gv~vi~~~~~~ 139 (147)
T 1o4w_A 127 QR-GIPVGYLKEDK 139 (147)
T ss_dssp HT-TCCEECCCCCC
T ss_pred HC-CCeEEEecCCc
Confidence 97 99999999876
No 2
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=98.94 E-value=1.7e-09 Score=74.38 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=63.0
Q ss_pred eeeecHHHHHHHHhhCc--------chHHHHhhccCC----ceEEEecCCC-CCCHHHHHHHhhhcCCeEEEEecCHHHH
Q psy3003 8 IPYITDCVLGEIEKLGQ--------KYKVALRIIKDP----RFERIPCMHK-GTYADDCIVNRVTQHKCYIVATCDKDLK 74 (106)
Q Consensus 8 ~~~vt~cVl~EL~~Lg~--------~~~~al~~ak~~----~~~~~~c~h~-~~~ad~ci~~~~~~~~~~iVaTqD~~Lr 74 (106)
+++||++|++||+.++. ..+.++++.+.. .+++.. .-. +..+|+-|++++.+.+ .+|.|||..|+
T Consensus 32 ~liIP~~Vl~ELq~lA~s~d~~~r~rGr~gL~iL~~L~~~~~vei~~-~~~~~~~vD~~ll~lA~~~~-~~lvTnD~~L~ 109 (134)
T 3ix7_A 32 PLWVPHFVLKELQHFADSQDPLRRAKGRRGLETLERLREAAPLEVLE-TTPKGESVDEKLLFLARDLE-AALVTNDHALL 109 (134)
T ss_dssp CEEEEHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHSCEEEEC-CCCSCSSHHHHHHHHHHHTT-CEEEESCHHHH
T ss_pred ceecHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcCCEEEeC-CCCCcccHHHHHHHHHHHhC-CEEEeCCHHHH
Confidence 69999999999999973 246677777611 145554 211 2479999999999886 89999999999
Q ss_pred HHHhcCCCccEEEEec
Q psy3003 75 RRIRKVPGVPIMYISQ 90 (106)
Q Consensus 75 ~~Lr~i~GVPviy~~~ 90 (106)
+.++.. |||++|++.
T Consensus 110 kvA~~~-GI~Vl~l~~ 124 (134)
T 3ix7_A 110 QMARIY-GVKALSIQA 124 (134)
T ss_dssp HHHHHT-TCCEEEHHH
T ss_pred HHHHHC-CCeEEehHH
Confidence 999995 999999873
No 3
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=98.55 E-value=1.9e-07 Score=64.65 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=62.1
Q ss_pred ceeeecHHHHHHHHhhCcc----hHHHHhhccCCce-----------EEEecC-------C-CCCCHHHHHHHhhhcCCe
Q psy3003 7 GIPYITDCVLGEIEKLGQK----YKVALRIIKDPRF-----------ERIPCM-------H-KGTYADDCIVNRVTQHKC 63 (106)
Q Consensus 7 ~~~~vt~cVl~EL~~Lg~~----~~~al~~ak~~~~-----------~~~~c~-------h-~~~~ad~ci~~~~~~~~~ 63 (106)
.+++||+.|++||+.++.. -+.||++++ ++ ++..-. + .+..+|+-|++++.+.+
T Consensus 30 ~~iiIP~~Vl~EL~~~a~~~r~~GrrGLe~L~--~L~~~~~~~~i~vei~~~r~~~~~i~~~~~~~vD~~l~~lA~~~~- 106 (142)
T 3i8o_A 30 ATIIIPEAVVSELEYQANMGREIGYKGIEELR--KLIEKASEHNIKVEYYGERPTREEIFLAKSGEIDAMIRKVAKETN- 106 (142)
T ss_dssp CEEEEEHHHHHHHHHHHTTTCHHHHHHHHHHH--HHHHHHHHTTCCEEEESCCCCHHHHHSCCSSSHHHHHHHHHHHTT-
T ss_pred CeEEehHHHHHHHHHHHHccchhhHHHHHHHH--HHHHHhhccCceEEEecccCchhhhccccCCcHHHHHHHHHHHhC-
Confidence 3699999999999999753 345666665 33 222110 0 11368999999999885
Q ss_pred EEEEecCHHHHHHHhcCCCccEEEEecce
Q psy3003 64 YIVATCDKDLKRRIRKVPGVPIMYISQHR 92 (106)
Q Consensus 64 ~iVaTqD~~Lr~~Lr~i~GVPviy~~~~~ 92 (106)
..+.|||..|++.++.. |||++|+++..
T Consensus 107 a~lvTnD~~l~kvA~~~-GI~V~~l~~~~ 134 (142)
T 3i8o_A 107 SILLTSDWIQYNLAKAQ-GIEAYFLEAAE 134 (142)
T ss_dssp CEEEESCHHHHHHHHHT-TCCEEECCCCC
T ss_pred CEEEcCCHHHHHHHHHc-CCEEEEecccc
Confidence 88999999999999995 99999998643
No 4
>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A
Probab=98.09 E-value=2.2e-06 Score=60.68 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=56.5
Q ss_pred cceeeecHHHHHHHHhhCc-----------------chHHHHhhccC------CceEE----------EecCCC-----C
Q psy3003 6 MGIPYITDCVLGEIEKLGQ-----------------KYKVALRIIKD------PRFER----------IPCMHK-----G 47 (106)
Q Consensus 6 ~~~~~vt~cVl~EL~~Lg~-----------------~~~~al~~ak~------~~~~~----------~~c~h~-----~ 47 (106)
...++||..|++||+.+.+ .++.|+.+..+ +.+.. +...+. .
T Consensus 37 ~~~viIP~~VleELd~lk~~~~~~~~~~~~~~~~~~~AR~a~~~L~~~~~~~~~~i~~~~~~g~~l~~v~~~~~~~~~~~ 116 (186)
T 2dok_A 37 KYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLEQRFESRDSCLRALTSRGNELESIAFRSEDITGQL 116 (186)
T ss_dssp SSEEEEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEECTTSCEESCCTTCCCCC----
T ss_pred CeEEEECHHHHHHHHHhccCCCccccccchhHHHHHHHHHHHHHHHHHHhhCCCeEEEEeccCcccccccccccccccCC
Confidence 4789999999999999853 34555554441 01110 001111 1
Q ss_pred CCHHHHHHHhhhc--------------------CCeEEEEecCHHHHHHHhcCCCccEEEEe
Q psy3003 48 TYADDCIVNRVTQ--------------------HKCYIVATCDKDLKRRIRKVPGVPIMYIS 89 (106)
Q Consensus 48 ~~ad~ci~~~~~~--------------------~~~~iVaTqD~~Lr~~Lr~i~GVPviy~~ 89 (106)
...|+.|++.+.. ....++.|+|..||.+.+.. |||+..++
T Consensus 117 ~~~D~~IL~~a~~l~~~~~~~~~~~~~~~~~~~~~~vvLvTnD~nLr~KA~~~-Gi~~~~~~ 177 (186)
T 2dok_A 117 GNNDDLILSCCLHYCKDKAKDFMPASKEEPIRLLREVVLLTDDRNLRVKALTR-NVPVRDIP 177 (186)
T ss_dssp CCHHHHHHHHHHTTCCCCGGGGCCC---CCCEEEEEEEEECCCHHHHHHHHHT-TCCEECHH
T ss_pred CCccHHHHHHHHHHHHhcccccccccccccccCCCcEEEEeCcHHHHHHHHHC-CCeeCcHH
Confidence 3689999998863 11478999999999999995 99998654
No 5
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=93.58 E-value=0.031 Score=38.30 Aligned_cols=78 Identities=15% Similarity=0.094 Sum_probs=51.8
Q ss_pred eeeecHHHHHHHHhhCcchHHHHhhcc-CCceEEEe---------------cCCC-C-CCHHHHHHHhhhcCCeEEEEec
Q psy3003 8 IPYITDCVLGEIEKLGQKYKVALRIIK-DPRFERIP---------------CMHK-G-TYADDCIVNRVTQHKCYIVATC 69 (106)
Q Consensus 8 ~~~vt~cVl~EL~~Lg~~~~~al~~ak-~~~~~~~~---------------c~h~-~-~~ad~ci~~~~~~~~~~iVaTq 69 (106)
+++||..|++||.... .+..+.... ...+++.. -+.. . ..+|..++.++.+.+ ..|.|+
T Consensus 27 ~l~~p~~V~~El~~~~--~r~~l~~l~~~~~l~v~~~~~~~i~~v~~~~~~~gd~~~Ls~~D~~lIaLA~~l~-~~lvT~ 103 (165)
T 2lcq_A 27 EGYTTPSVVEEIKDRE--SKIFLESLISAGKVKIAEPSKESIDRIIQVAKETGEVNELSKADIEVLALAYELK-GEIFSD 103 (165)
T ss_dssp CEEECHHHHTTCCSSH--HHHHHHHHHHTTSEEECCCCHHHHHHHHHHHHHHSCSSCSCHHHHHHHHHHHHHT-CCEECC
T ss_pred CEEEChhhHHhhcCHH--HHHHHHHhhccCCEEEecCCHHHHHHHHHHHHHcCCcccCCHHHHHHHHhHHHhC-CeEEcC
Confidence 6899999999996422 222333221 00132221 1110 1 247888999998765 688999
Q ss_pred CHHHHHHHhcCCCccEEEEe
Q psy3003 70 DKDLKRRIRKVPGVPIMYIS 89 (106)
Q Consensus 70 D~~Lr~~Lr~i~GVPviy~~ 89 (106)
|..||+.++.. ||+++.++
T Consensus 104 D~~l~~vA~~~-Gv~v~~~~ 122 (165)
T 2lcq_A 104 DYNVQNIASLL-GLRFRTLK 122 (165)
T ss_dssp CHHHHHHHHHT-TCCEECCS
T ss_pred cHHHHHHHHHC-CCeEEchh
Confidence 99999999996 99999876
No 6
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=70.03 E-value=1.8 Score=19.87 Aligned_cols=11 Identities=36% Similarity=0.757 Sum_probs=9.0
Q ss_pred CCccEEEEecc
Q psy3003 81 PGVPIMYISQH 91 (106)
Q Consensus 81 ~GVPviy~~~~ 91 (106)
..||+||.++.
T Consensus 4 kpvpiiycnrr 14 (21)
T 8tfv_A 4 KPVPIIYCNRR 14 (26)
T ss_dssp CCCCCEEEEGG
T ss_pred CcccEEEEcCc
Confidence 36999999974
No 7
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=64.88 E-value=4.8 Score=24.81 Aligned_cols=29 Identities=14% Similarity=0.340 Sum_probs=21.2
Q ss_pred EEEEecCHHHHHHHhc---CCCccEEEEecce
Q psy3003 64 YIVATCDKDLKRRIRK---VPGVPIMYISQHR 92 (106)
Q Consensus 64 ~iVaTqD~~Lr~~Lr~---i~GVPviy~~~~~ 92 (106)
.+=..+|.+++..|.+ .++||+||+.+..
T Consensus 49 ~vdi~~~~~~~~~l~~~~g~~~vP~ifi~g~~ 80 (109)
T 1wik_A 49 TFDILEDEEVRQGLKTFSNWPTYPQLYVRGDL 80 (109)
T ss_dssp EEESSSCHHHHHHHHHHHSCCSSCEEECSSSE
T ss_pred EEECCCCHHHHHHHHHHhCCCCCCEEEECCEE
Confidence 4445678888887763 5789999987664
No 8
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=63.65 E-value=5.8 Score=24.17 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=21.6
Q ss_pred eEEEEecCHHHHHHHh---cCCCccEEEEecce
Q psy3003 63 CYIVATCDKDLKRRIR---KVPGVPIMYISQHR 92 (106)
Q Consensus 63 ~~iVaTqD~~Lr~~Lr---~i~GVPviy~~~~~ 92 (106)
.++=..+|.+++..|. ..++||.+|+++..
T Consensus 50 ~~vdi~~~~~~~~~l~~~~g~~~vP~v~i~g~~ 82 (105)
T 2yan_A 50 ETFDILEDEEVRQGLKAYSNWPTYPQLYVKGEL 82 (105)
T ss_dssp EEEEGGGCHHHHHHHHHHHTCCSSCEEEETTEE
T ss_pred EEEECCCCHHHHHHHHHHHCCCCCCeEEECCEE
Confidence 3556678888887764 35799999886543
No 9
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=62.65 E-value=4.8 Score=24.73 Aligned_cols=34 Identities=9% Similarity=0.045 Sum_probs=24.4
Q ss_pred eEEEEecCHHHHHHHhcC----CCccEEEEecceEEEe
Q psy3003 63 CYIVATCDKDLKRRIRKV----PGVPIMYISQHRYTIE 96 (106)
Q Consensus 63 ~~iVaTqD~~Lr~~Lr~i----~GVPviy~~~~~l~lE 96 (106)
.++=..+|++.++.++++ ..||+|++..+.+..+
T Consensus 32 ~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~ 69 (92)
T 2lqo_A 32 DEVDIEHNRAAAEFVGSVNGGNRTVPTVKFADGSTLTN 69 (92)
T ss_dssp EEEETTTCHHHHHHHHHHSSSSSCSCEEEETTSCEEES
T ss_pred EEEEcCCCHHHHHHHHHHcCCCCEeCEEEEeCCEEEeC
Confidence 355567899999888753 3599999976665433
No 10
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=62.56 E-value=5.8 Score=26.09 Aligned_cols=30 Identities=17% Similarity=0.424 Sum_probs=23.0
Q ss_pred eEEEEecCHHHHHHHhc---CCCccEEEEecce
Q psy3003 63 CYIVATCDKDLKRRIRK---VPGVPIMYISQHR 92 (106)
Q Consensus 63 ~~iVaTqD~~Lr~~Lr~---i~GVPviy~~~~~ 92 (106)
.++=..+|++++..|++ .+.||+||+.+..
T Consensus 68 ~~vdI~~d~~~~~~L~~~~G~~tvP~VfI~G~~ 100 (135)
T 2wci_A 68 AYVDILQNPDIRAELPKYANWPTFPQLWVDGEL 100 (135)
T ss_dssp EEEEGGGCHHHHHHHHHHHTCCSSCEEEETTEE
T ss_pred EEEECCCCHHHHHHHHHHHCCCCcCEEEECCEE
Confidence 35556788999888874 5789999998754
No 11
>2fe1_A Conserved hypothetical protein PAE0151; PIN domain, structural genomics, unknown function; 2.20A {Pyrobaculum aerophilum} SCOP: c.120.1.1
Probab=62.22 E-value=4.3 Score=26.70 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=24.2
Q ss_pred CHHHHH-HHhhhcCCeEEEEecCHHHHHHHhcCCCcc
Q psy3003 49 YADDCI-VNRVTQHKCYIVATCDKDLKRRIRKVPGVP 84 (106)
Q Consensus 49 ~ad~ci-~~~~~~~~~~iVaTqD~~Lr~~Lr~i~GVP 84 (106)
++.||+ +..+...+ .-++|.|+.|.+..+.. |+|
T Consensus 122 ~~~Dal~lA~A~~~~-~~LvT~D~~l~~~a~~~-Gi~ 156 (156)
T 2fe1_A 122 TVYDAAYVALAEKIG-GKLLTLDRQLAEKFPAL-VTP 156 (156)
T ss_dssp CHHHHHHHHHHHHHT-CEEECSCHHHHHHCTTT-BC-
T ss_pred CHHHHHHHHHHHHcC-CCEEeCCHHHHHHHHHc-CCC
Confidence 444544 56666665 55999999999998884 875
No 12
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=60.83 E-value=4.9 Score=24.01 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=19.1
Q ss_pred EEEEecCHHHHHHHhcC-----CCccEEEEecce
Q psy3003 64 YIVATCDKDLKRRIRKV-----PGVPIMYISQHR 92 (106)
Q Consensus 64 ~iVaTqD~~Lr~~Lr~i-----~GVPviy~~~~~ 92 (106)
.+=.+.|.++++.|++. ..||.||+.+..
T Consensus 37 ~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~g~~ 70 (93)
T 1t1v_A 37 LVDISQDNALRDEMRTLAGNPKATPPQIVNGNHY 70 (93)
T ss_dssp EEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEE
T ss_pred EEECCCCHHHHHHHHHHhCCCCCCCCEEEECCEE
Confidence 34445677777766642 379999998654
No 13
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.88 E-value=7 Score=24.37 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=20.9
Q ss_pred EEEEecCHHHHHHHhcC-----------CCccEEEEecceE
Q psy3003 64 YIVATCDKDLKRRIRKV-----------PGVPIMYISQHRY 93 (106)
Q Consensus 64 ~iVaTqD~~Lr~~Lr~i-----------~GVPviy~~~~~l 93 (106)
++=.+.|.++++.|++. +.||.||+.+..+
T Consensus 43 ~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~i 83 (111)
T 2ct6_A 43 EVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYC 83 (111)
T ss_dssp EEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEEE
T ss_pred EEECCCCHHHHHHHHHHhcccccccCCCCCCCEEEECCEEE
Confidence 34446788888877754 3599999986543
No 14
>2hwy_A Protein SMG5; RNA degradation, decay, NMD, EST1A, P bodies, RNA binding protein; 2.75A {Homo sapiens}
Probab=58.42 E-value=7.9 Score=26.84 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=23.0
Q ss_pred ccceeeecHHHHHHHHhhCcc---hHHHHhhc
Q psy3003 5 QMGIPYITDCVLGEIEKLGQK---YKVALRII 33 (106)
Q Consensus 5 g~~~~~vt~cVl~EL~~Lg~~---~~~al~~a 33 (106)
++..++||.-|++||..|.+. ++.|+.+.
T Consensus 26 ~~~~IvIP~~Vi~ELD~LK~~~~~AR~Air~L 57 (164)
T 2hwy_A 26 GRFIVIIPRTVIDGLDLLKKEHPGARDGIRYL 57 (164)
T ss_dssp SSSEEEECHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred CCcEEEEcHHHHHHHHHhccCCHHHHHHHHHH
Confidence 457899999999999999864 67777665
No 15
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=56.97 E-value=12 Score=22.84 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=22.0
Q ss_pred eEEEEecCHHHHHHHh----cCCCccEEEEecce
Q psy3003 63 CYIVATCDKDLKRRIR----KVPGVPIMYISQHR 92 (106)
Q Consensus 63 ~~iVaTqD~~Lr~~Lr----~i~GVPviy~~~~~ 92 (106)
.++=..+|.+++..|. ...+||.+|+++..
T Consensus 44 ~~idI~~~~~~~~~l~~~~~g~~~vP~ifi~g~~ 77 (99)
T 3qmx_A 44 QEYCIDGDNEAREAMAARANGKRSLPQIFIDDQH 77 (99)
T ss_dssp EEEECTTCHHHHHHHHHHTTTCCCSCEEEETTEE
T ss_pred EEEEcCCCHHHHHHHHHHhCCCCCCCEEEECCEE
Confidence 3556678888888775 34689999987653
No 16
>2dk4_A PRE-mRNA-splicing factor 18; SFM domain, HPRP18, structural NPPSFA, national project on protein structural and function analyses; NMR {Homo sapiens} SCOP: a.140.6.1
Probab=55.85 E-value=0.7 Score=28.47 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=21.0
Q ss_pred EEEEecCHHHHHHHhcCCCccEEEEe
Q psy3003 64 YIVATCDKDLKRRIRKVPGVPIMYIS 89 (106)
Q Consensus 64 ~iVaTqD~~Lr~~Lr~i~GVPviy~~ 89 (106)
..|-|.|.+++++||+. |=||.+|-
T Consensus 23 ~~v~~~d~eV~~~LR~l-gEPi~LFG 47 (76)
T 2dk4_A 23 LPMTLSRQEVIRRLRER-GEPIRLFG 47 (76)
T ss_dssp SSCCSCHHHHHHHHHHH-TCCSSCTT
T ss_pred CCCCCCHHHHHHHHHHc-CCCeeecC
Confidence 45889999999999996 99987653
No 17
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=55.77 E-value=4.8 Score=26.16 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=23.7
Q ss_pred eEEEEecCHHHHHHHhcC---CCccEEEEecce
Q psy3003 63 CYIVATCDKDLKRRIRKV---PGVPIMYISQHR 92 (106)
Q Consensus 63 ~~iVaTqD~~Lr~~Lr~i---~GVPviy~~~~~ 92 (106)
..+-...|.++|+.|.+. +-||-||+++..
T Consensus 54 ~~~~v~~~~~~r~~l~~~sg~~TvPqIFI~g~~ 86 (118)
T 2wul_A 54 AAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEF 86 (118)
T ss_dssp EEEETTSCHHHHHHHHHHHTCCSSCEEEETTEE
T ss_pred EeecccCCHHHHHHHHHhccCCCCCeEeECCEE
Confidence 356668999999999864 459999998754
No 18
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=53.87 E-value=11 Score=23.99 Aligned_cols=28 Identities=21% Similarity=0.473 Sum_probs=21.7
Q ss_pred EEEecCHHHHHHHhc---CCCccEEEEecce
Q psy3003 65 IVATCDKDLKRRIRK---VPGVPIMYISQHR 92 (106)
Q Consensus 65 iVaTqD~~Lr~~Lr~---i~GVPviy~~~~~ 92 (106)
+=...|.+++..|.+ .+.||.||+++..
T Consensus 54 ~dv~~~~~~~~~l~~~sg~~tvP~vfI~g~~ 84 (121)
T 3gx8_A 54 YNVLEDPELREGIKEFSEWPTIPQLYVNKEF 84 (121)
T ss_dssp EECTTCHHHHHHHHHHHTCCSSCEEEETTEE
T ss_pred EEecCCHHHHHHHHHHhCCCCCCeEEECCEE
Confidence 335789999999874 4789999998754
No 19
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=53.62 E-value=10 Score=23.41 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=21.8
Q ss_pred EEEEecCHHHHHHHhc---CCCccEEEEecce
Q psy3003 64 YIVATCDKDLKRRIRK---VPGVPIMYISQHR 92 (106)
Q Consensus 64 ~iVaTqD~~Lr~~Lr~---i~GVPviy~~~~~ 92 (106)
++=..+|.+++..|.+ .+.||.||+++..
T Consensus 52 ~~dI~~~~~~~~~l~~~~g~~tvP~ifi~g~~ 83 (109)
T 3ipz_A 52 DVNILENEMLRQGLKEYSNWPTFPQLYIGGEF 83 (109)
T ss_dssp EEEGGGCHHHHHHHHHHHTCSSSCEEEETTEE
T ss_pred EEECCCCHHHHHHHHHHHCCCCCCeEEECCEE
Confidence 4434688899888864 4689999998754
No 20
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=53.42 E-value=54 Score=22.85 Aligned_cols=77 Identities=22% Similarity=0.277 Sum_probs=49.8
Q ss_pred eecHHHHHHHHhhC----cchHHHHhhccCCceEEEecCCCCCCHHHHHHHhhhcCCeEEEEecCHHHHHHHh-cCCCcc
Q psy3003 10 YITDCVLGEIEKLG----QKYKVALRIIKDPRFERIPCMHKGTYADDCIVNRVTQHKCYIVATCDKDLKRRIR-KVPGVP 84 (106)
Q Consensus 10 ~vt~cVl~EL~~Lg----~~~~~al~~ak~~~~~~~~c~h~~~~ad~ci~~~~~~~~~~iVaTqD~~Lr~~Lr-~i~GVP 84 (106)
.|.+.-++||++|. +.+...++.+++ +. .+...-+.....+-+.+++.+.++.++.+-| | ++++ ..|++|
T Consensus 73 ~v~d~T~~eL~~l~~~~iptL~evL~~~~~-~~-~l~iEiK~~~~~~~v~~~l~~~~~vii~Sf~--l-~~~~~~~p~~~ 147 (234)
T 1o1z_A 73 KIRDATVSELKELTDGKITTLKEVFENVSD-DK-IINIEIKEREAADAVLEISKKRKNLIFSSFD--L-DLLDEKFKGTK 147 (234)
T ss_dssp EGGGSCHHHHHHHTTTCCCBHHHHHHHSCT-TS-EEEEEECCGGGHHHHHHHHTTCCSEEEEESC--H-HHHHHHCTTSC
T ss_pred CcccCcHHHHhcCCCCCCCCHHHHHHhccc-CC-eEEEEeCCccHHHHHHHHHhccCCEEEEchh--H-HHHHhhCCCCc
Confidence 46667789999883 347888888873 21 1112112223446677777665579999999 5 4455 469999
Q ss_pred EEEEecc
Q psy3003 85 IMYISQH 91 (106)
Q Consensus 85 viy~~~~ 91 (106)
+.++...
T Consensus 148 ~~~l~~~ 154 (234)
T 1o1z_A 148 YGYLIDE 154 (234)
T ss_dssp EEEECCT
T ss_pred EEEEecc
Confidence 9888643
No 21
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=52.85 E-value=7.8 Score=24.27 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=21.5
Q ss_pred EEEEecCHHHHHHHhc---CCCccEEEEecce
Q psy3003 64 YIVATCDKDLKRRIRK---VPGVPIMYISQHR 92 (106)
Q Consensus 64 ~iVaTqD~~Lr~~Lr~---i~GVPviy~~~~~ 92 (106)
++=.+.|.++++.|.+ .+.||.||+.+..
T Consensus 50 ~~di~~d~~~~~~l~~~~g~~tvP~ifi~g~~ 81 (111)
T 3zyw_A 50 SFDIFSDEEVRQGLKAYSSWPTYPQLYVSGEL 81 (111)
T ss_dssp EEEGGGCHHHHHHHHHHHTCCSSCEEEETTEE
T ss_pred EEECcCCHHHHHHHHHHHCCCCCCEEEECCEE
Confidence 3434678999988864 4689999998754
No 22
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=51.43 E-value=12 Score=23.81 Aligned_cols=29 Identities=21% Similarity=0.388 Sum_probs=22.4
Q ss_pred EEEEecCHHHHHHHhc---CCCccEEEEecce
Q psy3003 64 YIVATCDKDLKRRIRK---VPGVPIMYISQHR 92 (106)
Q Consensus 64 ~iVaTqD~~Lr~~Lr~---i~GVPviy~~~~~ 92 (106)
.+=..+|.++++.|++ .+.||.||+.+..
T Consensus 55 ~vdV~~d~~~~~~l~~~tg~~tvP~vfI~g~~ 86 (118)
T 2wem_A 55 AYNVLDDPELRQGIKDYSNWPTIPQVYLNGEF 86 (118)
T ss_dssp EEESSSCHHHHHHHHHHHTCCSSCEEEETTEE
T ss_pred EEEcCCCHHHHHHHHHHhCCCCcCeEEECCEE
Confidence 4555789999988864 4789999998754
No 23
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=50.46 E-value=8.4 Score=29.29 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=39.6
Q ss_pred ceEEEecCCCCCCHHHHHHHhhhc----CCeEEEEecCHHHHHHHhcCCCccEEEEecceEEEee
Q psy3003 37 RFERIPCMHKGTYADDCIVNRVTQ----HKCYIVATCDKDLKRRIRKVPGVPIMYISQHRYTIER 97 (106)
Q Consensus 37 ~~~~~~c~h~~~~ad~ci~~~~~~----~~~~iVaTqD~~Lr~~Lr~i~GVPviy~~~~~l~lE~ 97 (106)
++..+.. .|-.|||+|-.++++ ....+|+|.|++|.+-+.. +||-++...+..-+.|.
T Consensus 120 gi~~l~~--~G~EADDiIgTLA~~a~~~g~~V~IvSgDKDl~QLv~~-~~V~~~~~~~~~~V~ek 181 (305)
T 3h7i_A 120 PYIVMDI--DKYEANDHIAVLVKKFSLEGHKILIISSDGDFTQLHKY-PNVKQWSPMHKKWVKIK 181 (305)
T ss_dssp SSEEECC--TTCCHHHHHHHHHHHHHHTTCCEEEECSSCCCGGGGGS-SSEEEEETTTTEEECSS
T ss_pred CCCEEcc--CCccHHHHHHHHHHHHHHCCCcEEEEeCCCCccccccC-CCeEEEecCCHHHHHHH
Confidence 3444444 345799999888764 2358999999999988874 47776655444444444
No 24
>3tnd_A TRNA(FMet)-specific endonuclease VAPC; PIN domain, spovt/ABRB-like domain, ribonuclease, DNA-bindin translation; 2.70A {Shigella flexneri}
Probab=48.98 E-value=23 Score=21.98 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=22.0
Q ss_pred CHHHHHH-HhhhcCCeEEEEecC-HHHHHHHhcCCCccEE
Q psy3003 49 YADDCIV-NRVTQHKCYIVATCD-KDLKRRIRKVPGVPIM 86 (106)
Q Consensus 49 ~ad~ci~-~~~~~~~~~iVaTqD-~~Lr~~Lr~i~GVPvi 86 (106)
+..|++. ..+..++ ..+.|.| ++++ .+||+.++
T Consensus 95 ~~~D~lIaA~A~~~~-~~lvT~d~~dF~----~~~gl~v~ 129 (132)
T 3tnd_A 95 GPFDQMIAGHARSRG-LIIVTNNTREFE----RVGGLRTE 129 (132)
T ss_dssp CHHHHHHHHHHHHTT-CEEEESCCHHHH----TSTTCCEE
T ss_pred CchHHHHHHHHHHcC-CEEEECCHHHhC----CCCCCeec
Confidence 3445544 5555675 6788999 8764 46888875
No 25
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=43.80 E-value=16 Score=20.53 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=14.3
Q ss_pred HHHHHHhc-CCCccEEEEecc
Q psy3003 72 DLKRRIRK-VPGVPIMYISQH 91 (106)
Q Consensus 72 ~Lr~~Lr~-i~GVPviy~~~~ 91 (106)
+|.++... +.++|.+|+.+.
T Consensus 47 ~l~~~~~~~~~~vP~i~~~g~ 67 (85)
T 1ego_A 47 DLQQKAGKPVETVPQIFVDQQ 67 (85)
T ss_dssp HHHHHTCCCSCCSCEEEETTE
T ss_pred HHHHHhCCCCceeCeEEECCE
Confidence 67777652 579999987543
No 26
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=37.79 E-value=17 Score=27.10 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=28.3
Q ss_pred ceEEEecCCCCCCHHHHHHHhhhc----CCeEEEEecCHHHHHHHh
Q psy3003 37 RFERIPCMHKGTYADDCIVNRVTQ----HKCYIVATCDKDLKRRIR 78 (106)
Q Consensus 37 ~~~~~~c~h~~~~ad~ci~~~~~~----~~~~iVaTqD~~Lr~~Lr 78 (106)
++..+.. .+-.|||.|-.++++ ....+|+|.|+++.+-..
T Consensus 117 gip~i~~--~g~EADDviatLa~~~~~~G~~v~IvS~DkDl~Qlv~ 160 (290)
T 1exn_A 117 TFPTFTI--RGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLT 160 (290)
T ss_dssp TSCEECC--TTBCHHHHHHHHHHHHGGGSSCEEEECSCGGGGGGCC
T ss_pred CCcEEEE--CCcCHHHHHHHHHHHHHHCCCcEEEEeCCCChhhcCC
Confidence 3444433 233799999999875 235889999999987663
No 27
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=37.20 E-value=81 Score=21.51 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=30.8
Q ss_pred ceEEEecCCCCC--CHHHHHHHhhhc-CCeEEEEecC----HHHHHHHhcCCCccEEEEecc
Q psy3003 37 RFERIPCMHKGT--YADDCIVNRVTQ-HKCYIVATCD----KDLKRRIRKVPGVPIMYISQH 91 (106)
Q Consensus 37 ~~~~~~c~h~~~--~ad~ci~~~~~~-~~~~iVaTqD----~~Lr~~Lr~i~GVPviy~~~~ 91 (106)
+++..-++.... ...+.+..++.. -.-.++...| .+.-+++.+ .|+|++.+.+.
T Consensus 35 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~ 95 (291)
T 3l49_A 35 GGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKIND-AGIPLFTVDTA 95 (291)
T ss_dssp TCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHH-TTCCEEEESCC
T ss_pred CCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHH-CCCcEEEecCC
Confidence 455555543221 224556666554 2336666666 345566667 49999999764
No 28
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=36.49 E-value=13 Score=22.62 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=16.0
Q ss_pred CHHHHHHHh---cCCCccEEEEecce
Q psy3003 70 DKDLKRRIR---KVPGVPIMYISQHR 92 (106)
Q Consensus 70 D~~Lr~~Lr---~i~GVPviy~~~~~ 92 (106)
|.+++..|. ..+.||.+|+++..
T Consensus 58 ~~~~~~~l~~~~g~~tvP~ifi~g~~ 83 (113)
T 3rhb_A 58 GPQLQKVLERLTGQHTVPNVFVCGKH 83 (113)
T ss_dssp HHHHHHHHHHHHSCCSSCEEEETTEE
T ss_pred hHHHHHHHHHHhCCCCcCEEEECCEE
Confidence 367676665 35789999987643
No 29
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=35.70 E-value=55 Score=20.25 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=28.2
Q ss_pred cCHHHHHHHhcCCCccEEEEecceEEEeeCCC
Q psy3003 69 CDKDLKRRIRKVPGVPIMYISQHRYTIERMPD 100 (106)
Q Consensus 69 qD~~Lr~~Lr~i~GVPviy~~~~~l~lE~~s~ 100 (106)
....|-++|-.++||-=+|+-.+-+.+++-+.
T Consensus 37 ~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~ 68 (91)
T 1pqx_A 37 SQPAFINDILKVEGVKSIFHVMDFISVDKEND 68 (91)
T ss_dssp SCCHHHHHHHHSTTEEEEEEETTEEEEEECTT
T ss_pred cCCHHHHHhhCCCCeeEEEEeCCEEEEecCCC
Confidence 46789999999999999999999999998544
No 30
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=35.67 E-value=56 Score=20.32 Aligned_cols=33 Identities=12% Similarity=0.284 Sum_probs=28.3
Q ss_pred ecCHHHHHHHhcCCCccEEEEecceEEEeeCCC
Q psy3003 68 TCDKDLKRRIRKVPGVPIMYISQHRYTIERMPD 100 (106)
Q Consensus 68 TqD~~Lr~~Lr~i~GVPviy~~~~~l~lE~~s~ 100 (106)
+....|-++|-.++||-=+|+-.+-+.+++-+.
T Consensus 36 a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~ 68 (94)
T 2k1h_A 36 EGQPEFINRLFEIEGVKSIFYVLDFISIDKEDN 68 (94)
T ss_dssp TTSCHHHHHHHTSTTEEEEEEETTEEEEEECTT
T ss_pred ccCCHHHHHhhCCCCeeEEEEeCCEEEEecCCC
Confidence 345779999999999999999999999998543
No 31
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=35.35 E-value=37 Score=20.33 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=17.2
Q ss_pred cCHHHHHHHhcCCCccEEEEecceE
Q psy3003 69 CDKDLKRRIRKVPGVPIMYISQHRY 93 (106)
Q Consensus 69 qD~~Lr~~Lr~i~GVPviy~~~~~l 93 (106)
.+.+|.++.. .+||++++.+..+
T Consensus 55 ~~~el~~~~g--~~vP~l~~~g~~~ 77 (100)
T 1wjk_A 55 ENSTWYERYK--FDIPVFHLNGQFL 77 (100)
T ss_dssp TTHHHHHHSS--SSCSEEEESSSEE
T ss_pred chHHHHHHHC--CCCCEEEECCEEE
Confidence 4678888877 4999998766543
No 32
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=34.10 E-value=42 Score=20.89 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=20.1
Q ss_pred HHHHHHhcCCCc--cEEEEecceEEEeeCCCCC
Q psy3003 72 DLKRRIRKVPGV--PIMYISQHRYTIERMPDAY 102 (106)
Q Consensus 72 ~Lr~~Lr~i~GV--Pviy~~~~~l~lE~~s~as 102 (106)
.||++|...++- .|..+++..+.++.+....
T Consensus 83 rLRkkL~~~~~~~~~I~tv~g~GY~l~~~~~~~ 115 (120)
T 2z9m_A 83 RLREKIEDDPSHPEYIVTRRGVGYFLQQHELEH 115 (120)
T ss_dssp HHHHHHCSSTTSCSSEEEETTTEEEECCC----
T ss_pred HHHHHhhcCCCCCCeEEEcCCcceEEeecCCCC
Confidence 478888765443 4888888888888765543
No 33
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=33.28 E-value=37 Score=19.39 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=16.6
Q ss_pred EEEecCHHHHHHHh---cCCCccEEEEecc
Q psy3003 65 IVATCDKDLKRRIR---KVPGVPIMYISQH 91 (106)
Q Consensus 65 iVaTqD~~Lr~~Lr---~i~GVPviy~~~~ 91 (106)
+=...|.+++..+. .+.++|++++++.
T Consensus 36 ~di~~~~~~~~~l~~~~~~~~vP~l~~~g~ 65 (92)
T 2khp_A 36 IDASATPELRAEMQERSGRNTFPQIFIGSV 65 (92)
T ss_dssp EESTTSHHHHHHHHHHHTSSCCCEEEETTE
T ss_pred EECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence 33345666666544 2468999987553
No 34
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=33.27 E-value=75 Score=22.20 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=30.9
Q ss_pred ceEEEecCCCCC--CHHHHHHHhhhc-CCeEEEEecCH----HHHHHHhcCCCccEEEEecc
Q psy3003 37 RFERIPCMHKGT--YADDCIVNRVTQ-HKCYIVATCDK----DLKRRIRKVPGVPIMYISQH 91 (106)
Q Consensus 37 ~~~~~~c~h~~~--~ad~ci~~~~~~-~~~~iVaTqD~----~Lr~~Lr~i~GVPviy~~~~ 91 (106)
++...-++.... ...+.|..++.. -.-.++...|. +.-+++++ .|+|++++.+.
T Consensus 33 g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~-~giPvV~~~~~ 93 (330)
T 3uug_A 33 GYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAGE-QGIKVIAYDRL 93 (330)
T ss_dssp TCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHHHH-TTCEEEEESSC
T ss_pred CCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHHHH-CCCCEEEECCC
Confidence 565555543322 223556666554 22366666553 34566777 49999999763
No 35
>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
Probab=32.94 E-value=10 Score=19.16 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=13.6
Q ss_pred HHHHHHhcCCCccEEEEe
Q psy3003 72 DLKRRIRKVPGVPIMYIS 89 (106)
Q Consensus 72 ~Lr~~Lr~i~GVPviy~~ 89 (106)
+++++||+. |=|+.++-
T Consensus 1 eV~~~LR~l-gePi~lFG 17 (31)
T 1mzw_B 1 EVKASLRAL-GEPITLFG 17 (31)
T ss_dssp CHHHHHHHT-TCCSEETT
T ss_pred CHHHHHHHc-CCCeeecC
Confidence 468899996 99988764
No 36
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=32.91 E-value=43 Score=24.44 Aligned_cols=18 Identities=6% Similarity=0.015 Sum_probs=15.9
Q ss_pred CeEEEEecCHHHHHHHhc
Q psy3003 62 KCYIVATCDKDLKRRIRK 79 (106)
Q Consensus 62 ~~~iVaTqD~~Lr~~Lr~ 79 (106)
.+++|||.|.+..+.+++
T Consensus 217 ~~vfvaSDd~~~~~~lk~ 234 (330)
T 2hhc_A 217 VKVFLCTDSAQVLDQVSG 234 (330)
T ss_dssp EEEEEEESCHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHH
Confidence 469999999999998885
No 37
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=32.83 E-value=31 Score=21.40 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=12.7
Q ss_pred HHHHHhcCCCccEEEEecce
Q psy3003 73 LKRRIRKVPGVPIMYISQHR 92 (106)
Q Consensus 73 Lr~~Lr~i~GVPviy~~~~~ 92 (106)
|+++.. +.+||.+|+.+..
T Consensus 74 l~~~~g-~~tvP~vfi~g~~ 92 (118)
T 3c1r_A 74 LYEING-QRTVPNIYINGKH 92 (118)
T ss_dssp HHHHHS-CCSSCEEEETTEE
T ss_pred HHHHhC-CCCcCEEEECCEE
Confidence 444443 4799999887654
No 38
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=32.66 E-value=47 Score=18.33 Aligned_cols=23 Identities=9% Similarity=0.200 Sum_probs=15.2
Q ss_pred ecCHHHHHHHh--cCCCccEEEEec
Q psy3003 68 TCDKDLKRRIR--KVPGVPIMYISQ 90 (106)
Q Consensus 68 TqD~~Lr~~Lr--~i~GVPviy~~~ 90 (106)
..|+++++.++ .+.++|++++.+
T Consensus 34 ~~~~~~~~~~~~~g~~~vP~~~~~g 58 (81)
T 1h75_A 34 DRVPEAAEALRAQGFRQLPVVIAGD 58 (81)
T ss_dssp TTCHHHHHHHHHTTCCSSCEEEETT
T ss_pred CCCHHHHHHHHHhCCCccCEEEECC
Confidence 44566666554 357899997644
No 39
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=32.05 E-value=51 Score=23.65 Aligned_cols=37 Identities=16% Similarity=0.347 Sum_probs=26.5
Q ss_pred HHHHHHhhhcCCeEEEEec--CHHHHHHHhcCCCccEEEEecc
Q psy3003 51 DDCIVNRVTQHKCYIVATC--DKDLKRRIRKVPGVPIMYISQH 91 (106)
Q Consensus 51 d~ci~~~~~~~~~~iVaTq--D~~Lr~~Lr~i~GVPviy~~~~ 91 (106)
-|-|+++ +.. .|+++. +.+..++|+++ |+|++++...
T Consensus 77 ~E~i~~l--~PD-lIi~~~~~~~~~~~~L~~~-Gipvv~~~~~ 115 (326)
T 3psh_A 77 IESLLAL--KPD-VVFVTNYAPSEMIKQISDV-NIPVVAISLR 115 (326)
T ss_dssp HHHHHHT--CCS-EEEEETTCCHHHHHHHHTT-TCCEEEECSC
T ss_pred HHHHHcc--CCC-EEEEeCCCChHHHHHHHHc-CCCEEEEecc
Confidence 3555554 444 777764 57899999996 9999998743
No 40
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=31.40 E-value=40 Score=21.84 Aligned_cols=30 Identities=10% Similarity=0.175 Sum_probs=21.5
Q ss_pred EEEEecCHHHHHHHhcC-----------CCccEEEEecceE
Q psy3003 64 YIVATCDKDLKRRIRKV-----------PGVPIMYISQHRY 93 (106)
Q Consensus 64 ~iVaTqD~~Lr~~Lr~i-----------~GVPviy~~~~~l 93 (106)
-+=.+.|.+.|+.+++. +.+|.||+.+..+
T Consensus 35 EidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~i 75 (121)
T 1u6t_A 35 EKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYR 75 (121)
T ss_dssp EEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEE
T ss_pred EEECCCCHHHHHHHHHhccccccccCCCcCCCEEEECCEEE
Confidence 45557788888887732 4799999886543
No 41
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=31.29 E-value=45 Score=22.73 Aligned_cols=39 Identities=10% Similarity=0.295 Sum_probs=26.0
Q ss_pred HHHHHhhhc-CCeEEEEecCHHHHH-HHhcCCCccEEEEecc
Q psy3003 52 DCIVNRVTQ-HKCYIVATCDKDLKR-RIRKVPGVPIMYISQH 91 (106)
Q Consensus 52 ~ci~~~~~~-~~~~iVaTqD~~Lr~-~Lr~i~GVPviy~~~~ 91 (106)
+.+..++.. -.-.++...|.+.-+ ++++. |+|++++.+.
T Consensus 55 ~~~~~l~~~~~dgiIi~~~~~~~~~~~l~~~-~iPvV~~~~~ 95 (277)
T 3e61_A 55 GYLATFVSHNCTGMISTAFNENIIENTLTDH-HIPFVFIDRI 95 (277)
T ss_dssp HHHHHHHHTTCSEEEECGGGHHHHHHHHHHC--CCEEEGGGC
T ss_pred HHHHHHHhCCCCEEEEecCChHHHHHHHHcC-CCCEEEEecc
Confidence 444455443 234777777788777 88884 9999998764
No 42
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=30.84 E-value=50 Score=21.01 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=21.2
Q ss_pred HHHHHHhcCCCcc--EEEEecceEEEeeC
Q psy3003 72 DLKRRIRKVPGVP--IMYISQHRYTIERM 98 (106)
Q Consensus 72 ~Lr~~Lr~i~GVP--viy~~~~~l~lE~~ 98 (106)
.||++|...++-| |..+++-.+.||.+
T Consensus 83 rLRkKL~~~~~~~~~I~TvrG~GY~l~~~ 111 (120)
T 2zxj_A 83 RLREKIEDDPSHPEYIVTRRGVGYFLQQH 111 (120)
T ss_dssp HHHHHHCSSTTSCSSEEEETTTEEEECCC
T ss_pred HHHHHHhhCCCCCCeEEEeCCEeeEEecC
Confidence 3888888766666 78888888999874
No 43
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=30.76 E-value=23 Score=24.84 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=26.4
Q ss_pred CHHHHHHHhhhcCCeEEEEecCH---------HHHHHHhcCCCccEEEE
Q psy3003 49 YADDCIVNRVTQHKCYIVATCDK---------DLKRRIRKVPGVPIMYI 88 (106)
Q Consensus 49 ~ad~ci~~~~~~~~~~iVaTqD~---------~Lr~~Lr~i~GVPviy~ 88 (106)
++|.-|+++|.+.+ .+|.|||+ ++|+.+++. =++--|.
T Consensus 113 ydD~~il~~A~~~~-g~IVSND~~rD~~~~~p~~k~~Ie~r-li~ytFv 159 (185)
T 3v32_B 113 YDDRFIVKLAYESD-GIVVSNDTYRDLQGERQEWKRFIEER-LLMYSFV 159 (185)
T ss_dssp CHHHHHHHHHHHTT-CEEECSCCCHHHHHHCHHHHHHHHHH-EECCEEE
T ss_pred ccHHHHHHHHHHcC-CEEEeCccHHHHHhhCHHHHHHHHhC-cceeEEE
Confidence 67888999999886 77889994 566666642 2444444
No 44
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=30.32 E-value=51 Score=23.40 Aligned_cols=27 Identities=30% Similarity=0.317 Sum_probs=22.2
Q ss_pred CeEEEEecCHHHHHHHhcCCCccEEEEe
Q psy3003 62 KCYIVATCDKDLKRRIRKVPGVPIMYIS 89 (106)
Q Consensus 62 ~~~iVaTqD~~Lr~~Lr~i~GVPviy~~ 89 (106)
...+|+|+|.+++..+.+ .|+++++.+
T Consensus 43 ~~vvVvt~~~~i~~~~~~-~g~~v~~~~ 69 (253)
T 4fcu_A 43 DDLCVATDDERIAEICRA-EGVDVVLTS 69 (253)
T ss_dssp CEEEEEESCHHHHHHHHT-TTCCEEECC
T ss_pred CEEEEECCHHHHHHHHHH-cCCeEEEeC
Confidence 368999999999988887 499988754
No 45
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=30.05 E-value=1.3e+02 Score=20.50 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=32.3
Q ss_pred HhhccCCce-EEEecCCCCC--CHHHHHHHhhhcC-CeEEEEecCH----HHHHHHhcCCCccEEEEecc
Q psy3003 30 LRIIKDPRF-ERIPCMHKGT--YADDCIVNRVTQH-KCYIVATCDK----DLKRRIRKVPGVPIMYISQH 91 (106)
Q Consensus 30 l~~ak~~~~-~~~~c~h~~~--~ad~ci~~~~~~~-~~~iVaTqD~----~Lr~~Lr~i~GVPviy~~~~ 91 (106)
-+.+++..+ ++.-++.... ...+.+..++... .-.++...|. +.-+++++ .|+|++.+.+.
T Consensus 25 ~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~-~~iPvV~~~~~ 93 (309)
T 2fvy_A 25 EQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARG-QNVPVVFFNKE 93 (309)
T ss_dssp HHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHHT-TTCCEEEESSC
T ss_pred HHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHHHH-CCCcEEEecCC
Confidence 334443344 5555543221 1234555555442 2355555454 34566777 59999999753
No 46
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=29.38 E-value=49 Score=23.11 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.1
Q ss_pred eEEEEecCHHHHHHHhcCCCccEEEEe
Q psy3003 63 CYIVATCDKDLKRRIRKVPGVPIMYIS 89 (106)
Q Consensus 63 ~~iVaTqD~~Lr~~Lr~i~GVPviy~~ 89 (106)
..+|+|+|..+++.+.+ .|+.++|.+
T Consensus 44 ~ivVv~~~~~i~~~~~~-~g~~v~~~~ 69 (252)
T 3oam_A 44 RVIIATDDERVEQAVQA-FGGVVCMTS 69 (252)
T ss_dssp EEEEEESCHHHHHHHHH-TTCEEEECC
T ss_pred eEEEECCHHHHHHHHHH-cCCEEEEcC
Confidence 68999999999998888 499988765
No 47
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=29.31 E-value=23 Score=26.29 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=31.6
Q ss_pred ceEEEecCCCCCCHHHHHHHhhhcCCeEEEEecCHHHHHHHhcCCCccEEEEe
Q psy3003 37 RFERIPCMHKGTYADDCIVNRVTQHKCYIVATCDKDLKRRIRKVPGVPIMYIS 89 (106)
Q Consensus 37 ~~~~~~c~h~~~~ad~ci~~~~~~~~~~iVaTqD~~Lr~~Lr~i~GVPviy~~ 89 (106)
+++.+... + .||+.|..++++.....|.|+|.++-.- |.|-++.+
T Consensus 143 gi~~i~ap--g-EAD~~ia~La~~g~~~~I~S~D~Dll~~-----~~~~v~~~ 187 (326)
T 1a76_A 143 GIPYVEAP--S-EGEAQASYMAKKGDVWAVVSQDYDALLY-----GAPRVVRN 187 (326)
T ss_dssp TCCEEECS--S-CHHHHHHHHHHTTSSSEEECSSSGGGGG-----TCSEEEES
T ss_pred CCCeEECC--c-cHHHHHHHHHHCCCEEEEecCCccccee-----cCCEEEEe
Confidence 45555552 2 7999999999875457899999997653 55655554
No 48
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=29.14 E-value=46 Score=18.31 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=14.9
Q ss_pred EecCHHHHHHHh---cCCCccEEEEecc
Q psy3003 67 ATCDKDLKRRIR---KVPGVPIMYISQH 91 (106)
Q Consensus 67 aTqD~~Lr~~Lr---~i~GVPviy~~~~ 91 (106)
...|.+++..+. .+.++|++++.+.
T Consensus 33 i~~~~~~~~~~~~~~~~~~vP~l~~~g~ 60 (82)
T 1fov_A 33 IDGNAAKREEMIKRSGRTTVPQIFIDAQ 60 (82)
T ss_dssp CTTCSHHHHHHHHHHSSCCSCEEEETTE
T ss_pred CCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence 344555554433 3579999987543
No 49
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=28.87 E-value=55 Score=24.26 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=23.7
Q ss_pred HHHhhhc-CCeEEEEecCHHHHHHHhcCCCccEEEEecc
Q psy3003 54 IVNRVTQ-HKCYIVATCDKDLKRRIRKVPGVPIMYISQH 91 (106)
Q Consensus 54 i~~~~~~-~~~~iVaTqD~~Lr~~Lr~i~GVPviy~~~~ 91 (106)
+..+... -.-.|+...|.++.+.+.+. |+|+|++.+.
T Consensus 69 i~~l~~~~vDGiIi~~~~~~~~~~l~~~-~iPvV~i~~~ 106 (412)
T 4fe7_A 69 IDKIKDWLGDGVIADFDDKQIEQALADV-DVPIVGVGGS 106 (412)
T ss_dssp ------CCCSEEEEETTCHHHHHHHTTC-CSCEEEEEEC
T ss_pred hhhHhcCCCCEEEEecCChHHHHHHhhC-CCCEEEecCC
Confidence 4444433 22377778888888899984 9999999753
No 50
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=28.64 E-value=26 Score=26.73 Aligned_cols=45 Identities=22% Similarity=0.212 Sum_probs=31.6
Q ss_pred ceEEEecCCCCCCHHHHHHHhhhcCCeEEEEecCHHHHHHHhcCCCccEEEEe
Q psy3003 37 RFERIPCMHKGTYADDCIVNRVTQHKCYIVATCDKDLKRRIRKVPGVPIMYIS 89 (106)
Q Consensus 37 ~~~~~~c~h~~~~ad~ci~~~~~~~~~~iVaTqD~~Lr~~Lr~i~GVPviy~~ 89 (106)
++..+... + .||+.|..+++....+.|+|+|.++-.- |.|-++.+
T Consensus 148 Gi~~i~ap--g-EADd~iA~La~~g~~~~iiS~D~Dll~~-----g~~~v~~~ 192 (379)
T 1ul1_X 148 GIPYLDAP--S-EAEASCAALVKAGKVYAAATEDMDCLTF-----GSPVLMRH 192 (379)
T ss_dssp TCCEEECS--S-CHHHHHHHHHHHTSSSEEECSCTHHHHT-----TCSEEEEC
T ss_pred CCCeecCC--C-cHHHHHHHHHhcCCeEEEEecCcCcccc-----ccceEEEE
Confidence 34555542 2 7999999999876568899999998664 45555543
No 51
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=28.50 E-value=38 Score=19.45 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=15.7
Q ss_pred cCHHHHHHHhc---CC-----CccEEEE-ecce
Q psy3003 69 CDKDLKRRIRK---VP-----GVPIMYI-SQHR 92 (106)
Q Consensus 69 qD~~Lr~~Lr~---i~-----GVPviy~-~~~~ 92 (106)
+|++.+..|++ .+ .||.||+ .+..
T Consensus 43 ~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~ 75 (87)
T 1aba_A 43 FDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSH 75 (87)
T ss_dssp CCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCE
T ss_pred cCHHHHHHHHHHhCCCCCCCCccCEEEEECCEE
Confidence 57666655542 35 8999999 5543
No 52
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=28.20 E-value=1.4e+02 Score=20.61 Aligned_cols=54 Identities=7% Similarity=0.165 Sum_probs=30.9
Q ss_pred ceEEEecCCCCC--CHHHHHHHhhhc-CCeEEEEecCH----HHHHHHhcCCCccEEEEecc
Q psy3003 37 RFERIPCMHKGT--YADDCIVNRVTQ-HKCYIVATCDK----DLKRRIRKVPGVPIMYISQH 91 (106)
Q Consensus 37 ~~~~~~c~h~~~--~ad~ci~~~~~~-~~~~iVaTqD~----~Lr~~Lr~i~GVPviy~~~~ 91 (106)
++...-++.... ...+.+..++.. -.-.++...|. +.-+++++ .|+|++++.+.
T Consensus 32 g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~ 92 (313)
T 3m9w_A 32 GAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQ-EGIKVLAYDRM 92 (313)
T ss_dssp SCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHHT-TTCEEEEESSC
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHH-CCCeEEEECCc
Confidence 455555543221 223556666554 22356665543 56677777 49999999753
No 53
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=28.09 E-value=61 Score=22.24 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=21.7
Q ss_pred cCCeEEEEecC---HHHHHHHhcCCCccEEEEe
Q psy3003 60 QHKCYIVATCD---KDLKRRIRKVPGVPIMYIS 89 (106)
Q Consensus 60 ~~~~~iVaTqD---~~Lr~~Lr~i~GVPviy~~ 89 (106)
+.. .|+++.. .+..++|+++ |+|++++.
T Consensus 59 ~PD-lIi~~~~~~~~~~~~~L~~~-gipvv~~~ 89 (255)
T 3md9_A 59 KPT-MLLVSELAQPSLVLTQIASS-GVNVVTVP 89 (255)
T ss_dssp CCS-EEEEETTCSCHHHHHHHHHT-TCEEEEEC
T ss_pred CCC-EEEEcCCcCchhHHHHHHHc-CCcEEEeC
Confidence 344 7777654 5789999996 99999986
No 54
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=27.39 E-value=1.5e+02 Score=20.11 Aligned_cols=61 Identities=7% Similarity=0.119 Sum_probs=33.1
Q ss_pred HhhccCCceEEEecCCCCC--CHHHHHHHhhhc-CCeEEEEecC-HHHHHHHhcCCCccEEEEecc
Q psy3003 30 LRIIKDPRFERIPCMHKGT--YADDCIVNRVTQ-HKCYIVATCD-KDLKRRIRKVPGVPIMYISQH 91 (106)
Q Consensus 30 l~~ak~~~~~~~~c~h~~~--~ad~ci~~~~~~-~~~~iVaTqD-~~Lr~~Lr~i~GVPviy~~~~ 91 (106)
-+.+++.++...-+...+. ...+.+..+... -.-.++...| .+.-+++++ .|+|++++.+.
T Consensus 30 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~l~~-~~iPvV~i~~~ 94 (276)
T 3jy6_A 30 SSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSNPQTVQEILH-QQMPVVSVDRE 94 (276)
T ss_dssp HHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCCHHHHHHHHT-TSSCEEEESCC
T ss_pred HHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCcHHHHHHHHH-CCCCEEEEecc
Confidence 3344433555555543322 122444455443 2235555544 566677777 49999999753
No 55
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=27.32 E-value=43 Score=21.23 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=13.8
Q ss_pred HHHHHHhc---CCCccEEEEecce
Q psy3003 72 DLKRRIRK---VPGVPIMYISQHR 92 (106)
Q Consensus 72 ~Lr~~Lr~---i~GVPviy~~~~~ 92 (106)
++++.|.+ .++||.||+++..
T Consensus 81 ~~~~~L~~~~g~~tVP~vfi~g~~ 104 (129)
T 3ctg_A 81 EIQDALEEISGQKTVPNVYINGKH 104 (129)
T ss_dssp HHHHHHHHHHSCCSSCEEEETTEE
T ss_pred HHHHHHHHHhCCCCCCEEEECCEE
Confidence 34444442 4789999987654
No 56
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=27.03 E-value=1.7e+02 Score=25.33 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=46.6
Q ss_pred cceeeecHHHHHHHHhhCcc-hHHHHhhccC----CceEEEecCC-CCC------------CHHHHHHHhhh---c----
Q psy3003 6 MGIPYITDCVLGEIEKLGQK-YKVALRIIKD----PRFERIPCMH-KGT------------YADDCIVNRVT---Q---- 60 (106)
Q Consensus 6 ~~~~~vt~cVl~EL~~Lg~~-~~~al~~ak~----~~~~~~~c~h-~~~------------~ad~ci~~~~~---~---- 60 (106)
...++|++-|++|++..+.. |+.--.++++ .+|-+..-.| ..+ .-|.+|...+. +
T Consensus 84 ~~~vii~qtv~~~v~~~~~~~y~rl~~l~~~~~~~~~~~vF~ne~~~~t~~~~~~~es~~~r~~r~i~~~~~wy~~hl~~ 163 (977)
T 2wp8_J 84 FFDVIVPQIVLDEVRNKSYPVYTRLRTLCRDSDDHKRFIVFHNEFSEHTFVERLPNETINDRNDRAIRKTCQWYSEHLKP 163 (977)
T ss_dssp CCEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCCSSCEEEEECTTTBTTTCCC-------CCHHHHHHHHHHHHHHHHHGG
T ss_pred cCCEEEEHHHHHHHHhcCHHHHHHHHHHhcCcCcCceEEEEccccchhhcccCccCCChhhhhHHHHHHHHHHHHHhccc
Confidence 34689999999999997643 4444444432 1565554333 221 13567766553 1
Q ss_pred -CCeEEEEecCHHHHHHHhcC--CCccEEEEe
Q psy3003 61 -HKCYIVATCDKDLKRRIRKV--PGVPIMYIS 89 (106)
Q Consensus 61 -~~~~iVaTqD~~Lr~~Lr~i--~GVPviy~~ 89 (106)
.-..++.|+|.+-+++.++. .|++++.+.
T Consensus 164 ~~~~vv~~t~d~~~~~~~~~~~~~~~~~~s~~ 195 (977)
T 2wp8_J 164 YDINVVLVTNDRLNREAATKEVESNIITKSLV 195 (977)
T ss_dssp GTCEEEEEECC-----------CCCSCEEEHH
T ss_pred cCCCEEEEeCCHHHHHHHhhhccCCcEEEEHH
Confidence 22589999999999988871 499998875
No 57
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=26.80 E-value=67 Score=22.06 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=24.1
Q ss_pred HHHHHhhhcCCeEEEEec---CHHHHHHHhcCCCccEEEEe
Q psy3003 52 DCIVNRVTQHKCYIVATC---DKDLKRRIRKVPGVPIMYIS 89 (106)
Q Consensus 52 ~ci~~~~~~~~~~iVaTq---D~~Lr~~Lr~i~GVPviy~~ 89 (106)
|-|+++ +.. .|+++. +.++..+|+++ |+|++.+.
T Consensus 53 E~i~~l--~PD-LIi~~~~~~~~~~~~~L~~~-gipvv~~~ 89 (256)
T 2r7a_A 53 EGILSL--RPD-SVITWQDAGPQIVLDQLRAQ-KVNVVTLP 89 (256)
T ss_dssp HHHHTT--CCS-EEEEETTCSCHHHHHHHHHT-TCEEEEEC
T ss_pred HHHHcc--CCC-EEEEcCCCCCHHHHHHHHHc-CCcEEEec
Confidence 444433 344 777754 47899999997 99999875
No 58
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=26.79 E-value=60 Score=23.11 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=21.6
Q ss_pred eEEEEecCHHHHHHHhcCCCccEEEEe
Q psy3003 63 CYIVATCDKDLKRRIRKVPGVPIMYIS 89 (106)
Q Consensus 63 ~~iVaTqD~~Lr~~Lr~i~GVPviy~~ 89 (106)
..+|+|+|.++++.+.+ .|+.+++.+
T Consensus 51 ~VvVvt~~~~i~~~~~~-~g~~v~~~~ 76 (256)
T 3tqd_A 51 EVVIATDDKRIRQVAED-FGAVVCMTS 76 (256)
T ss_dssp EEEEEESCHHHHHHHHH-TTCEEEECC
T ss_pred EEEEECCHHHHHHHHHH-cCCeEEEeC
Confidence 58999999999988887 488888754
No 59
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=26.35 E-value=21 Score=22.23 Aligned_cols=73 Identities=19% Similarity=0.207 Sum_probs=40.9
Q ss_pred ceeeecHHHHHHHHhhCcc------hHHH-HhhccCCceEEEecCC---------------C--CCCHHHHH-HHhhhcC
Q psy3003 7 GIPYITDCVLGEIEKLGQK------YKVA-LRIIKDPRFERIPCMH---------------K--GTYADDCI-VNRVTQH 61 (106)
Q Consensus 7 ~~~~vt~cVl~EL~~Lg~~------~~~a-l~~ak~~~~~~~~c~h---------------~--~~~ad~ci-~~~~~~~ 61 (106)
-.++++.-++.|+...... .... -.+.. .++++.-+. . ..+..|++ ...+..+
T Consensus 32 ~~~~is~i~~~El~~~~~~~~~~~~~~~~l~~~l~--~~~il~~~~~~~~~a~~l~~~~~~~g~~~~~~D~lIaA~A~~~ 109 (134)
T 3zvk_A 32 NTIAISSIVLAELQYGVSKSKKKEQNQSKLDIFLS--RLEIIDFSAKCTFYYGELRTELEQKGLIIGNNDLLIASHAIAE 109 (134)
T ss_dssp SEEEEEHHHHHHHHHHHHHSSCHHHHHHHHHHHHT--TSEEECBCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CcEEeeheeHHHHHHHHHhcCCHHHHHHHHHHHHh--cCceecCCHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHC
Confidence 4688999999999643211 1111 12233 455554421 0 12334444 4555556
Q ss_pred CeEEEEecC-HHHHHHHhcCCCccEE
Q psy3003 62 KCYIVATCD-KDLKRRIRKVPGVPIM 86 (106)
Q Consensus 62 ~~~iVaTqD-~~Lr~~Lr~i~GVPvi 86 (106)
+ ..+.|.| ++++ .+||+.++
T Consensus 110 ~-~~lvT~d~~df~----~~~gl~~~ 130 (134)
T 3zvk_A 110 N-ATLVTNNIKEFK----RIPNLILE 130 (134)
T ss_dssp T-CEEEESSTTTSC----SCTTCEEE
T ss_pred C-CEEEECCHHHhc----CCCCCeee
Confidence 5 5788999 7664 46787765
No 60
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=26.21 E-value=82 Score=16.81 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=19.0
Q ss_pred ecCHHHHHHHhcCCCccEEEEecceEEEe
Q psy3003 68 TCDKDLKRRIRKVPGVPIMYISQHRYTIE 96 (106)
Q Consensus 68 TqD~~Lr~~Lr~i~GVPviy~~~~~l~lE 96 (106)
-+|.++.+++.- .|+|.+++ +++++..
T Consensus 37 v~~~~~~~~~~v-~~~Pt~~~-~G~~~~~ 63 (77)
T 1ilo_A 37 IKEMDQILEAGL-TALPGLAV-DGELKIM 63 (77)
T ss_dssp ECSHHHHHHHTC-SSSSCEEE-TTEEEEC
T ss_pred ecCHHHHHHCCC-CcCCEEEE-CCEEEEc
Confidence 347788777754 69999999 6655433
No 61
>2h1c_A Trafficking protein B; DNA binding, PIN domain, RHH domain, gene regulation; 1.80A {Neisseria gonorrhoeae} SCOP: c.120.1.1 PDB: 2bsq_A* 2h1o_A*
Probab=26.14 E-value=52 Score=20.03 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=20.0
Q ss_pred CHHHHHH-HhhhcCCeEEEEecC-HHHHHHHhcCCCccEE
Q psy3003 49 YADDCIV-NRVTQHKCYIVATCD-KDLKRRIRKVPGVPIM 86 (106)
Q Consensus 49 ~ad~ci~-~~~~~~~~~iVaTqD-~~Lr~~Lr~i~GVPvi 86 (106)
+..|++. ..+..++ ..+.|.| +++++ + |++++
T Consensus 101 ~~~D~liaA~A~~~~-~~lvT~d~~df~~----~-~l~~~ 134 (139)
T 2h1c_A 101 AAADGYIAATAKQHS-LTVATRDTGSFFA----A-DVAVF 134 (139)
T ss_dssp CHHHHHHHHHHHHHT-CEEECSCCHHHHH----T-TCCEE
T ss_pred CccHHHHHHHHHHcC-CeEEECCHHHHhh----C-CCeee
Confidence 3445554 5555565 5899999 77764 3 66654
No 62
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=25.95 E-value=1.3e+02 Score=20.49 Aligned_cols=54 Identities=17% Similarity=0.341 Sum_probs=30.1
Q ss_pred ceEEEecCCCCC--CHHHHHHHhhhc-CCeEEEEecCH----HHHHHHhcCCCccEEEEecc
Q psy3003 37 RFERIPCMHKGT--YADDCIVNRVTQ-HKCYIVATCDK----DLKRRIRKVPGVPIMYISQH 91 (106)
Q Consensus 37 ~~~~~~c~h~~~--~ad~ci~~~~~~-~~~~iVaTqD~----~Lr~~Lr~i~GVPviy~~~~ 91 (106)
++...-++.... ...+.+..++.. -.-.|+...|. +.-+++.+ .|+|++++.+.
T Consensus 38 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~-~~iPvV~~~~~ 98 (293)
T 3l6u_A 38 KYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKK-AGIPVFAIDRM 98 (293)
T ss_dssp TCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHH-TTCCEEEESSC
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHH-cCCCEEEecCC
Confidence 455555543222 223556666554 22355554433 45567777 49999999753
No 63
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=25.72 E-value=97 Score=20.78 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=29.2
Q ss_pred ceEEEecCCCCC--CHHHHHHHhhhc-CCeEEEEecC---HHHHHHHhcCCCccEEEEecc
Q psy3003 37 RFERIPCMHKGT--YADDCIVNRVTQ-HKCYIVATCD---KDLKRRIRKVPGVPIMYISQH 91 (106)
Q Consensus 37 ~~~~~~c~h~~~--~ad~ci~~~~~~-~~~~iVaTqD---~~Lr~~Lr~i~GVPviy~~~~ 91 (106)
++...-+..... ...+.+..++.. -.-.++...| .+.-+++++ .|+|++++.+.
T Consensus 32 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~-~~iPvV~~~~~ 91 (272)
T 3o74_A 32 GYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQD-KGLPVIAIDRR 91 (272)
T ss_dssp TCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHH-TTCCEEEESSC
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHHH-cCCCEEEEccC
Confidence 454444443221 123444455443 2235554433 556677887 49999998754
No 64
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=25.46 E-value=35 Score=25.88 Aligned_cols=35 Identities=14% Similarity=-0.019 Sum_probs=26.3
Q ss_pred ceEEEecCCCCCCHHHHHHHhhhcCCeEEEEecCHHHH
Q psy3003 37 RFERIPCMHKGTYADDCIVNRVTQHKCYIVATCDKDLK 74 (106)
Q Consensus 37 ~~~~~~c~h~~~~ad~ci~~~~~~~~~~iVaTqD~~Lr 74 (106)
+++.+... -.||+.|..++++.....|.|+|.++-
T Consensus 141 gIp~i~ap---~EADaqiA~La~~g~~~~I~S~D~Dll 175 (352)
T 3qe9_Y 141 GVDCLVAP---YEADAQLAYLNKAGIVQAIITEDSALL 175 (352)
T ss_dssp TCEEEECS---SCHHHHHHHHHHTTSCSEEECSCGGGG
T ss_pred CCcEEECC---cchHHHHHHHHHCCCeEEEEeCCcCcc
Confidence 45555542 379999999998765678999999974
No 65
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=25.45 E-value=53 Score=19.16 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=9.3
Q ss_pred CCCccEEEEecc
Q psy3003 80 VPGVPIMYISQH 91 (106)
Q Consensus 80 i~GVPviy~~~~ 91 (106)
+.+||.+|+.+.
T Consensus 66 ~~~vP~i~~~g~ 77 (105)
T 1kte_A 66 ARTVPRVFIGKE 77 (105)
T ss_dssp CCCSCEEEETTE
T ss_pred CCCcCeEEECCE
Confidence 579999988654
No 66
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=25.33 E-value=31 Score=25.79 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=32.5
Q ss_pred ceEEEecCCCCCCHHHHHHHhhhcCCeEEEEecCHHHHHHHhcCCCccEEEEe
Q psy3003 37 RFERIPCMHKGTYADDCIVNRVTQHKCYIVATCDKDLKRRIRKVPGVPIMYIS 89 (106)
Q Consensus 37 ~~~~~~c~h~~~~ad~ci~~~~~~~~~~iVaTqD~~Lr~~Lr~i~GVPviy~~ 89 (106)
+++.+... -.||+.|..++++.....|.|+|.++-. -|.|.++.+
T Consensus 143 gip~i~ap---~EADa~iA~La~~g~~~~i~S~D~D~l~-----~g~~~v~~~ 187 (340)
T 1b43_A 143 GIPIVQAP---SEGEAQAAYMAAKGSVYASASQDYDSLL-----FGAPRLVRN 187 (340)
T ss_dssp TCCEEECS---SCHHHHHHHHHHHTSSSEEECSSSHHHH-----TTCSEEEES
T ss_pred CCcEEEcC---hhHHHHHHHHHHcCCEEEEEccCCCcce-----ecCcEEEEE
Confidence 45666553 3699999999987545788999999843 267777665
No 67
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=24.84 E-value=38 Score=25.55 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=31.6
Q ss_pred ceEEEecCCCCCCHHHHHHHhhhcCCeEEEEecCHHHHHHHhcCCCccEEEE
Q psy3003 37 RFERIPCMHKGTYADDCIVNRVTQHKCYIVATCDKDLKRRIRKVPGVPIMYI 88 (106)
Q Consensus 37 ~~~~~~c~h~~~~ad~ci~~~~~~~~~~iVaTqD~~Lr~~Lr~i~GVPviy~ 88 (106)
++..+... + .||+.|..+++....++|+|.|.++-.- |.|.++.
T Consensus 148 gip~i~ap--~-EADd~ia~La~~g~v~~i~s~D~D~l~~-----~~~~v~~ 191 (341)
T 3q8k_A 148 GIPYLDAP--S-EAEASCAALVKAGKVYAAATEDMDCLTF-----GSPVLMR 191 (341)
T ss_dssp TCCEEECS--S-CHHHHHHHHHHTTSSSEEECSCTHHHHT-----TCSEEEE
T ss_pred CCCEEECC--c-cHHHHHHHHHhcCCeEEEEcCCcccccc-----CCcEEEE
Confidence 45556553 3 7999999999876567789999998654 4565543
No 68
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=24.82 E-value=1.6e+02 Score=19.83 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=30.5
Q ss_pred ceEEEecCCCCC--CHHHHHHHhhhcC-CeEEEEec-------CHHHHHHHhcCCCccEEEEecc
Q psy3003 37 RFERIPCMHKGT--YADDCIVNRVTQH-KCYIVATC-------DKDLKRRIRKVPGVPIMYISQH 91 (106)
Q Consensus 37 ~~~~~~c~h~~~--~ad~ci~~~~~~~-~~~iVaTq-------D~~Lr~~Lr~i~GVPviy~~~~ 91 (106)
++...-+..... ...+.+..++... .-.++... +.++-+++++ .|+|++++.+.
T Consensus 45 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~-~~iPvV~~~~~ 108 (298)
T 3tb6_A 45 GYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEK-NGIPFAMINAS 108 (298)
T ss_dssp TCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHH-TTCCEEEESSC
T ss_pred CCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHh-cCCCEEEEecC
Confidence 455555543222 2234555555442 23555443 3467778888 49999999764
No 69
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=24.79 E-value=53 Score=19.91 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=12.5
Q ss_pred HHHHHHhcCCCccEEEEecc
Q psy3003 72 DLKRRIRKVPGVPIMYISQH 91 (106)
Q Consensus 72 ~Lr~~Lr~i~GVPviy~~~~ 91 (106)
+|.++.. +.+||.+++++.
T Consensus 66 ~l~~~~g-~~~vP~v~i~g~ 84 (114)
T 2hze_A 66 YFEQITG-GKTVPRIFFGKT 84 (114)
T ss_dssp HHHHHHS-CCSSCEEEETTE
T ss_pred HHHHHhC-CCCcCEEEECCE
Confidence 4554443 469999988544
No 70
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=24.73 E-value=36 Score=25.57 Aligned_cols=45 Identities=9% Similarity=-0.059 Sum_probs=31.4
Q ss_pred ceEEEecCCCCCCHHHHHHHhhhcCCeEEEEecCHHHHHHHhcCCCccEEEEe
Q psy3003 37 RFERIPCMHKGTYADDCIVNRVTQHKCYIVATCDKDLKRRIRKVPGVPIMYIS 89 (106)
Q Consensus 37 ~~~~~~c~h~~~~ad~ci~~~~~~~~~~iVaTqD~~Lr~~Lr~i~GVPviy~~ 89 (106)
+++.+... + .||+.|-.+++......|.|+|.++-.- |.|.++++
T Consensus 140 gi~~i~ap--~-EADa~ia~La~~g~~~~I~S~D~D~l~~-----~~~~v~~~ 184 (346)
T 2izo_A 140 GIPIVQAP--S-EGEAEAAYLNKLGLSWAAASQDYDAILF-----GAKRLVRN 184 (346)
T ss_dssp TCCEEECS--S-CHHHHHHHHHHTTSSSEEECSSSHHHHT-----TCSEEEES
T ss_pred CCCEEEcC--C-cHHHHHHHHHhCCCeEEEECCCCCccee-----cCCeEEEE
Confidence 34555442 2 7999999998865458899999998753 55656554
No 71
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=24.58 E-value=51 Score=18.74 Aligned_cols=19 Identities=16% Similarity=0.406 Sum_probs=11.9
Q ss_pred HHHHHHhcCCCccEEEEec
Q psy3003 72 DLKRRIRKVPGVPIMYISQ 90 (106)
Q Consensus 72 ~Lr~~Lr~i~GVPviy~~~ 90 (106)
+|.++...+.+||++++.+
T Consensus 45 ~l~~~~~~~~~vP~l~~~g 63 (89)
T 2klx_A 45 EMVQRANGRNTFPQIFIGD 63 (89)
T ss_dssp HHHHHHHSSCCSCEEEETT
T ss_pred HHHHHhCCCCCcCEEEECC
Confidence 3444442456999998744
No 72
>1v8p_A Hypothetical protein PAE2754; PIN-domain, tetramer, structural genomics, unknown function; 2.52A {Pyrobaculum aerophilum} SCOP: c.120.1.1 PDB: 1v8o_A
Probab=24.25 E-value=55 Score=21.68 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=22.2
Q ss_pred CHHHH-HHHhhhcCCeEEEEecCHHHHHHHhc
Q psy3003 49 YADDC-IVNRVTQHKCYIVATCDKDLKRRIRK 79 (106)
Q Consensus 49 ~ad~c-i~~~~~~~~~~iVaTqD~~Lr~~Lr~ 79 (106)
+.-|| ++..+...+ .-+.|.|+.|.+..++
T Consensus 114 s~yDA~~lAlA~~~g-~~L~T~D~~L~~~a~~ 144 (158)
T 1v8p_A 114 TFYDASYAYVAESSG-LVLVTQDRELLAKTKG 144 (158)
T ss_dssp CHHHHHHHHHHHHTT-CEEECSCHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhC-CeEEeCCHHHHHHHHh
Confidence 44444 457777765 5679999999999876
No 73
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} SCOP: c.33.1.0
Probab=24.09 E-value=52 Score=22.44 Aligned_cols=18 Identities=17% Similarity=0.578 Sum_probs=14.6
Q ss_pred HHHHHHhcCCCccEEEEec
Q psy3003 72 DLKRRIRKVPGVPIMYISQ 90 (106)
Q Consensus 72 ~Lr~~Lr~i~GVPviy~~~ 90 (106)
.|.+..|.. |+||||.+.
T Consensus 44 ~Li~~ar~~-g~pVi~t~~ 61 (199)
T 3txy_A 44 ELANAFRAR-KLPVIFVHT 61 (199)
T ss_dssp HHHHHHHHT-TCCEEEEEE
T ss_pred HHHHHHHHc-CCcEEEEEe
Confidence 466778884 999999985
No 74
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=23.62 E-value=1.4e+02 Score=20.59 Aligned_cols=64 Identities=8% Similarity=0.133 Sum_probs=33.8
Q ss_pred HHHHhhccCCceEEEecCCCCC--CHHHHHHHhhhc-CCeEEEEec--CHHHHHHHhcCCCccEEEEecc
Q psy3003 27 KVALRIIKDPRFERIPCMHKGT--YADDCIVNRVTQ-HKCYIVATC--DKDLKRRIRKVPGVPIMYISQH 91 (106)
Q Consensus 27 ~~al~~ak~~~~~~~~c~h~~~--~ad~ci~~~~~~-~~~~iVaTq--D~~Lr~~Lr~i~GVPviy~~~~ 91 (106)
++.-+.+++.++...-+..... ...+.+..+... -.-.|++.. +.++.+.+.+ .|+|++++.+.
T Consensus 32 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~-~~iPvV~i~~~ 100 (295)
T 3hcw_A 32 LGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKENDPIKQMLID-ESMPFIVIGKP 100 (295)
T ss_dssp HHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTTCHHHHHHHH-TTCCEEEESCC
T ss_pred HHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccChHHHHHHHh-CCCCEEEECCC
Confidence 3444445433666666654321 122344444433 222555432 3456677887 49999999753
No 75
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=23.39 E-value=39 Score=16.34 Aligned_cols=15 Identities=13% Similarity=0.479 Sum_probs=11.5
Q ss_pred HHHHHHhhCcchHHH
Q psy3003 15 VLGEIEKLGQKYKVA 29 (106)
Q Consensus 15 Vl~EL~~Lg~~~~~a 29 (106)
+-+||+++|.+|...
T Consensus 10 iAqELRRIGDeFN~~ 24 (27)
T 3kj0_B 10 YAQELRRIGDEFNAY 24 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 457999999887653
No 76
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=23.13 E-value=1.8e+02 Score=19.64 Aligned_cols=40 Identities=8% Similarity=0.163 Sum_probs=24.3
Q ss_pred HHHHHhhhcC-CeEEEEecC--HHHHHHHhcCCCccEEEEecc
Q psy3003 52 DCIVNRVTQH-KCYIVATCD--KDLKRRIRKVPGVPIMYISQH 91 (106)
Q Consensus 52 ~ci~~~~~~~-~~~iVaTqD--~~Lr~~Lr~i~GVPviy~~~~ 91 (106)
+.+..++... .-.++...| ..+...+.+..|+|++++.+.
T Consensus 54 ~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~~~~ 96 (289)
T 1dbq_A 54 AYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWG 96 (289)
T ss_dssp HHHHHHHHTTCSEEEEECSCCCHHHHHHHHHTTTSCEEEEECS
T ss_pred HHHHHHHhCCCCEEEEEeccCCHHHHHHHHhccCCCEEEEccC
Confidence 4555555442 235555443 456677765359999999753
No 77
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=22.39 E-value=1.1e+02 Score=17.10 Aligned_cols=32 Identities=6% Similarity=0.149 Sum_probs=24.1
Q ss_pred ecCHHHHHHHhcCCCccEEEE-ecceEEEeeCC
Q psy3003 68 TCDKDLKRRIRKVPGVPIMYI-SQHRYTIERMP 99 (106)
Q Consensus 68 TqD~~Lr~~Lr~i~GVPviy~-~~~~l~lE~~s 99 (106)
|==+++|++|.-.+|=++.+. ..+.++|.+..
T Consensus 25 tIPkeiR~~Lgi~~Gd~l~i~~~~~~IiL~p~~ 57 (59)
T 1yfb_A 25 VIPIELRRTLGIAEKDALEIYVDDEKIILKKYK 57 (59)
T ss_dssp ECCHHHHHHTTCCTTCEEEEEEETTEEEEEECC
T ss_pred EeCHHHHHHcCCCCCCEEEEEEECCEEEEEECC
Confidence 445789999996678887654 46789998754
No 78
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum}
Probab=22.02 E-value=61 Score=21.60 Aligned_cols=18 Identities=22% Similarity=0.763 Sum_probs=14.1
Q ss_pred HHHHHHhcCCCccEEEEec
Q psy3003 72 DLKRRIRKVPGVPIMYISQ 90 (106)
Q Consensus 72 ~Lr~~Lr~i~GVPviy~~~ 90 (106)
.|.+..|.. |+||||.+.
T Consensus 33 ~l~~~ar~~-g~pVi~t~~ 50 (182)
T 3eef_A 33 KVIETFRRS-GLPVVYVND 50 (182)
T ss_dssp HHHHHHHHT-TCCEEEEEE
T ss_pred HHHHHHHHc-CCeEEEEec
Confidence 466777774 999999983
No 79
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=22.01 E-value=88 Score=18.44 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=14.3
Q ss_pred HHHHHHh---cCCCccEEEEecceE
Q psy3003 72 DLKRRIR---KVPGVPIMYISQHRY 93 (106)
Q Consensus 72 ~Lr~~Lr---~i~GVPviy~~~~~l 93 (106)
++...|+ ...+||++++.++..
T Consensus 64 ~~~~~l~~~~g~~~vP~l~i~~~~~ 88 (103)
T 3nzn_A 64 EAVEEVRRFNPSVSFPTTIINDEKA 88 (103)
T ss_dssp HHHHHHHHHCTTCCSCEEEETTTEE
T ss_pred HHHHHHHHhCCCCccCEEEECCCEE
Confidence 4444443 357899999987443
No 80
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=21.74 E-value=88 Score=20.36 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=12.2
Q ss_pred cCCCccEEEEecceEE
Q psy3003 79 KVPGVPIMYISQHRYT 94 (106)
Q Consensus 79 ~i~GVPviy~~~~~l~ 94 (106)
.+.|+|.+++++..++
T Consensus 149 gv~gtPt~~vng~~~~ 164 (192)
T 3h93_A 149 QVTGVPTMVVNGKYRF 164 (192)
T ss_dssp TCCSSSEEEETTTEEE
T ss_pred CCCCCCeEEECCEEEe
Confidence 3789999999766543
No 81
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=21.71 E-value=88 Score=20.42 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=12.1
Q ss_pred cCCCccEEEEecceEE
Q psy3003 79 KVPGVPIMYISQHRYT 94 (106)
Q Consensus 79 ~i~GVPviy~~~~~l~ 94 (106)
.+.|+|.+++++..+.
T Consensus 148 gv~gtPt~ving~~~~ 163 (195)
T 3hd5_A 148 HIDGTPAFAVGGRYMT 163 (195)
T ss_dssp TCCSSSEEEETTTEEE
T ss_pred CCCcCceEEECCEEEe
Confidence 3679999999766543
No 82
>3ts3_A Capsid polyprotein; virus protein, projection domain, astrovirus capsid, viral P; 1.49A {Turkey astrovirus 2}
Probab=21.68 E-value=62 Score=22.84 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=18.4
Q ss_pred cCHHHHHHHhcCCCccEEEEe
Q psy3003 69 CDKDLKRRIRKVPGVPIMYIS 89 (106)
Q Consensus 69 qD~~Lr~~Lr~i~GVPviy~~ 89 (106)
-|.+|++||.-..|=|||.+-
T Consensus 127 ~dq~lk~r~nl~egDpvismg 147 (208)
T 3ts3_A 127 LDEQLKQRLNLAEGDPVISMG 147 (208)
T ss_dssp SCHHHHHHHCCCTTCEEEEEE
T ss_pred hhhhhhhhhccccCCceeeec
Confidence 389999999977899999875
No 83
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=21.32 E-value=31 Score=16.61 Aligned_cols=14 Identities=14% Similarity=0.665 Sum_probs=10.6
Q ss_pred HHHHHHhhCcchHH
Q psy3003 15 VLGEIEKLGQKYKV 28 (106)
Q Consensus 15 Vl~EL~~Lg~~~~~ 28 (106)
+-+||+++|.+|..
T Consensus 8 iAqELRRIGDeFN~ 21 (26)
T 2wh6_B 8 IAQELRRIGDEFNA 21 (26)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHhh
Confidence 45799999987643
No 84
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=21.06 E-value=1.3e+02 Score=22.31 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=30.6
Q ss_pred eEEEecCCCCCCHHHHHHHhhhc-CCeEEEEec-CH-----------HHHHHHhcCCCccEEE
Q psy3003 38 FERIPCMHKGTYADDCIVNRVTQ-HKCYIVATC-DK-----------DLKRRIRKVPGVPIMY 87 (106)
Q Consensus 38 ~~~~~c~h~~~~ad~ci~~~~~~-~~~~iVaTq-D~-----------~Lr~~Lr~i~GVPviy 87 (106)
+.++=++. +..+..||..++.. ++-..|.|| |+ .++++..+ .|+|++.
T Consensus 8 mrivf~Gt-~~fa~~~L~~L~~~~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~-~gIpv~~ 68 (318)
T 3q0i_A 8 LRIVFAGT-PDFAARHLAALLSSEHEIIAVYTQPERPAGRGKKLTASPVKTLALE-HNVPVYQ 68 (318)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTSSSEEEEEECCCC---------CCCHHHHHHHH-TTCCEEC
T ss_pred CEEEEEec-CHHHHHHHHHHHHCCCcEEEEEcCCCCcccccccCCCCHHHHHHHH-cCCCEEc
Confidence 33444432 23577899888865 445678887 54 45677777 4999854
No 85
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=20.98 E-value=86 Score=22.38 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=21.3
Q ss_pred eEEEEecCHHHHHHHhcCCCccEEEEe
Q psy3003 63 CYIVATCDKDLKRRIRKVPGVPIMYIS 89 (106)
Q Consensus 63 ~~iVaTqD~~Lr~~Lr~i~GVPviy~~ 89 (106)
..+|+|+|.++++.+++ .|+.+++.+
T Consensus 60 ~IvV~t~~~~i~~~~~~-~g~~v~~~~ 85 (264)
T 3k8d_A 60 RIIVATDHEDVARAVEA-AGGEVCMTR 85 (264)
T ss_dssp EEEEEESCHHHHHHHHH-TTCEEEECC
T ss_pred EEEEECCHHHHHHHHHH-cCCEEEEec
Confidence 68999999999988887 488887754
No 86
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=20.78 E-value=70 Score=19.44 Aligned_cols=22 Identities=9% Similarity=0.321 Sum_probs=14.4
Q ss_pred HHHHHHHh---cCCCccEEEEecce
Q psy3003 71 KDLKRRIR---KVPGVPIMYISQHR 92 (106)
Q Consensus 71 ~~Lr~~Lr---~i~GVPviy~~~~~ 92 (106)
.+++..|. ..+.||.+|+++..
T Consensus 56 ~~~~~~l~~~~g~~tvP~vfi~g~~ 80 (114)
T 3h8q_A 56 ARVQEVLSEITNQKTVPNIFVNKVH 80 (114)
T ss_dssp HHHHHHHHHHHSCCSSCEEEETTEE
T ss_pred HHHHHHHHHHhCCCccCEEEECCEE
Confidence 35555553 35789999997653
No 87
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=20.61 E-value=53 Score=18.27 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=8.7
Q ss_pred CCccEEEEecc
Q psy3003 81 PGVPIMYISQH 91 (106)
Q Consensus 81 ~GVPviy~~~~ 91 (106)
.+||++++.+.
T Consensus 60 ~~vP~i~i~g~ 70 (89)
T 3msz_A 60 STVPQIFIDDE 70 (89)
T ss_dssp CSSCEEEETTE
T ss_pred CccCEEEECCE
Confidence 58999998554
No 88
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=20.44 E-value=1.8e+02 Score=18.80 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=8.4
Q ss_pred HHHHHhcCCCccEEEEecc
Q psy3003 73 LKRRIRKVPGVPIMYISQH 91 (106)
Q Consensus 73 Lr~~Lr~i~GVPviy~~~~ 91 (106)
+.+.|++. ++|++++.+|
T Consensus 55 ~~~~l~~~-~~pv~~v~GN 72 (228)
T 1uf3_A 55 FFRILSEA-HLPTAYVPGP 72 (228)
T ss_dssp HHHHHGGG-CSCEEEECCT
T ss_pred HHHHHHhc-CCcEEEECCC
Confidence 33444443 4555555544
No 89
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=20.43 E-value=34 Score=19.31 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=12.7
Q ss_pred cCHHHHHHHhcCCCccE
Q psy3003 69 CDKDLKRRIRKVPGVPI 85 (106)
Q Consensus 69 qD~~Lr~~Lr~i~GVPv 85 (106)
.|.+||..|++. |++.
T Consensus 7 sd~eLr~~L~~~-G~~~ 22 (53)
T 1jei_A 7 SDTELTTLLRRY-NIPH 22 (53)
T ss_dssp CHHHHHHHHSSS-CCSC
T ss_pred CHHHHHHHHHHh-CCCC
Confidence 478999999984 7754
No 90
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=20.43 E-value=2.2e+02 Score=19.61 Aligned_cols=52 Identities=8% Similarity=0.020 Sum_probs=26.7
Q ss_pred EEEecCCCCC--CHHHHHHHhhhcCCeEEEEecCHHHHHHHhcCCCccEEEEec
Q psy3003 39 ERIPCMHKGT--YADDCIVNRVTQHKCYIVATCDKDLKRRIRKVPGVPIMYISQ 90 (106)
Q Consensus 39 ~~~~c~h~~~--~ad~ci~~~~~~~~~~iVaTqD~~Lr~~Lr~i~GVPviy~~~ 90 (106)
.+.-|+..+. .....+..+..+.--.+|++-+...........|+|++++..
T Consensus 38 ~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~~~~~iPvV~~~~ 91 (295)
T 3lft_A 38 KIDFMNSEGDQSKVATMSKQLVANGNDLVVGIATPAAQGLASATKDLPVIMAAI 91 (295)
T ss_dssp EEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESHHHHHHHHHHCSSSCEEEESC
T ss_pred EEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCcHHHHHHHHcCCCCCEEEEec
Confidence 3444554332 234455555544323555554444333333347999999864
Done!