RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3003
         (106 letters)



>d1o4wa_ c.120.1.1 (A:) Hypothetical protein AF0591 {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 125

 Score = 85.3 bits (211), Expect = 1e-23
 Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 1   MEQLQMGIPYITDCVLGEIEKLGQKYKVALRIIKD---PRFERIPCMHKGTYADDCIVNR 57
           + +       IT  V  E+EKL    +   ++         E    +   +  D  ++  
Sbjct: 26  LREFGFSRFLITASVKRELEKLEMSLRGKEKVAARFALKLLEHFEVVETESEGDPSLIEA 85

Query: 58  VTQHKCYIVATCDKDLKRRIRKVPGVPIMYISQHRY-TIERM 98
             ++   I+ T DK+LKR+ ++  G+P+ Y+ + +   +E +
Sbjct: 86  AEKYG-CILITNDKELKRKAKQ-RGIPVGYLKEDKRVFVELL 125


>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 269

 Score = 23.6 bits (50), Expect = 6.5
 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 1/52 (1%)

Query: 13  DCVLGEIEKLGQKYKVALRIIKDPRFERIPCMHKGTYADDCIVNRVTQHKCY 64
           +C+    E     Y    R+  D       C    + + +C  NRV Q    
Sbjct: 85  ECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECP-NRVVQRGRT 135


>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator
          1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 69

 Score = 22.3 bits (48), Expect = 9.6
 Identities = 7/36 (19%), Positives = 15/36 (41%)

Query: 27 KVALRIIKDPRFERIPCMHKGTYADDCIVNRVTQHK 62
          K   +I+ DPR+  +    +    D  +  R  + +
Sbjct: 33 KELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEER 68


>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM
          {Methylobacillus flagellatus [TaxId: 405]}
          Length = 395

 Score = 23.0 bits (49), Expect = 9.7
 Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 1/39 (2%)

Query: 47 GTYADDCIVNRVTQHKCYIVATCDKDLKRRIRKVPGVPI 85
            +    + N   +  C ++A  D           G+PI
Sbjct: 47 KGFGAHLM-NVRHERPCEVIAAVDDFRYHSGELYYGLPI 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.143    0.447 

Gapped
Lambda     K      H
   0.267   0.0559    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 441,298
Number of extensions: 19911
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 14
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.3 bits)