BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3004
         (169 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F0A|A Chain A, Crystal Structure Of Xwnt8 In Complex With The
           Cysteine-Rich Domain Of Frizzled 8
          Length = 132

 Score =  163 bits (413), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 87/116 (75%), Gaps = 21/116 (18%)

Query: 37  CEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTP 96
           C+EIT+P+CKGIGYN T MPN+ NHDTQDEAGLEVHQFWPLVEI+CS DLKFFLCSMYTP
Sbjct: 8   CQEITVPLCKGIGYNYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTP 67

Query: 97  ICIEDYYK---------------------KYGFSWPDRMACDRLPELGDPNNLCME 131
           IC+EDY K                     +YGF+WPDRM CDRLPE G+P+ LCM+
Sbjct: 68  ICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFAWPDRMRCDRLPEQGNPDTLCMD 123


>pdb|1IJY|A Chain A, Crystal Structure Of The Cysteine-Rich Domain Of Mouse
           Frizzled 8 (Mfz8)
 pdb|1IJY|B Chain B, Crystal Structure Of The Cysteine-Rich Domain Of Mouse
           Frizzled 8 (Mfz8)
          Length = 130

 Score =  160 bits (406), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 75/116 (64%), Positives = 86/116 (74%), Gaps = 21/116 (18%)

Query: 37  CEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTP 96
           C+EIT+P+CKGIGY  T MPN+ NHDTQDEAGLEVHQFWPLVEI+CS DLKFFLCSMYTP
Sbjct: 10  CQEITVPLCKGIGYEYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTP 69

Query: 97  ICIEDYYK---------------------KYGFSWPDRMACDRLPELGDPNNLCME 131
           IC+EDY K                     +YGF+WPDRM CDRLPE G+P+ LCM+
Sbjct: 70  ICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFAWPDRMRCDRLPEQGNPDTLCMD 125


>pdb|1IJX|A Chain A, Crystal Structure Of The Cysteine-Rich Domain Of Secreted
           Frizzled- Related Protein 3 (Sfrp-3;fzb)
 pdb|1IJX|B Chain B, Crystal Structure Of The Cysteine-Rich Domain Of Secreted
           Frizzled- Related Protein 3 (Sfrp-3;fzb)
 pdb|1IJX|C Chain C, Crystal Structure Of The Cysteine-Rich Domain Of Secreted
           Frizzled- Related Protein 3 (Sfrp-3;fzb)
 pdb|1IJX|D Chain D, Crystal Structure Of The Cysteine-Rich Domain Of Secreted
           Frizzled- Related Protein 3 (Sfrp-3;fzb)
 pdb|1IJX|E Chain E, Crystal Structure Of The Cysteine-Rich Domain Of Secreted
           Frizzled- Related Protein 3 (Sfrp-3;fzb)
 pdb|1IJX|F Chain F, Crystal Structure Of The Cysteine-Rich Domain Of Secreted
           Frizzled- Related Protein 3 (Sfrp-3;fzb)
          Length = 127

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 56/109 (51%), Gaps = 22/109 (20%)

Query: 34  GGRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSM 93
              CE + IP+CK + + +T+MPN ++H TQ  A L + QF  L+   CS DL FFLC+M
Sbjct: 2   SAACEPVRIPLCKSLPWEMTKMPNHLHHSTQANAILAMEQFEGLLGTHCSPDLLFFLCAM 61

Query: 94  YTPICIEDYYK----------------------KYGFSWPDRMACDRLP 120
           Y PIC  D+                        KY  SWP+ +ACD LP
Sbjct: 62  YAPICTIDFQHEPIKPCKSVCERARQGCEPILIKYRHSWPESLACDELP 110


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,129,582
Number of Sequences: 62578
Number of extensions: 202970
Number of successful extensions: 303
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 3
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)