Query psy3004
Match_columns 169
No_of_seqs 111 out of 514
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 23:03:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07463 CRD_FZ9 Cysteine-rich 100.0 2.1E-36 4.6E-41 233.8 6.3 104 33-136 1-125 (127)
2 cd07462 CRD_FZ10 Cysteine-rich 100.0 9.3E-36 2E-40 230.3 6.6 101 35-135 3-124 (127)
3 cd07460 CRD_FZ5 Cysteine-rich 100.0 1E-35 2.2E-40 230.1 6.3 103 34-136 2-125 (127)
4 cd07441 CRD_SFRP3 Cysteine-ric 100.0 1.4E-35 2.9E-40 229.1 6.1 100 34-135 1-122 (126)
5 cd07461 CRD_FZ8 Cysteine-rich 100.0 2E-35 4.2E-40 227.9 6.1 101 34-134 2-123 (125)
6 cd07457 CRD_FZ9_like Cysteine- 100.0 2E-35 4.4E-40 226.5 6.1 99 35-133 1-120 (121)
7 cd07442 CRD_SFRP4 Cysteine-ric 100.0 2.2E-35 4.7E-40 228.2 5.2 100 34-135 2-123 (127)
8 cd07466 CRD_FZ7 Cysteine-rich 100.0 3.9E-35 8.4E-40 226.3 6.3 102 34-136 2-123 (125)
9 cd07448 CRD_FZ4 Cysteine-rich 100.0 4.8E-35 1E-39 225.8 6.7 102 35-136 2-124 (126)
10 cd07456 CRD_FZ5_like Cysteine- 100.0 6.8E-35 1.5E-39 223.4 5.8 98 36-133 1-119 (120)
11 cd07449 CRD_FZ3 Cysteine-rich 100.0 8.4E-35 1.8E-39 225.0 6.4 98 36-133 4-121 (127)
12 cd07465 CRD_FZ1 Cysteine-rich 100.0 9.5E-35 2.1E-39 224.6 6.5 102 34-136 2-123 (127)
13 cd07888 CRD_corin_2 One of two 100.0 6.9E-35 1.5E-39 223.9 5.7 98 36-133 1-121 (122)
14 cd07464 CRD_FZ2 Cysteine-rich 100.0 1.1E-34 2.5E-39 224.2 6.1 102 34-136 2-123 (127)
15 cd07454 CRD_LIN_17 Cysteine-ri 100.0 1.1E-34 2.3E-39 223.5 5.4 98 34-134 2-120 (124)
16 cd07458 CRD_FZ1_like Cysteine- 100.0 2.8E-34 6E-39 219.8 6.0 98 35-133 1-118 (119)
17 cd07446 CRD_SFRP2 Cysteine-ric 100.0 1.6E-33 3.5E-38 218.0 6.7 98 34-134 2-122 (128)
18 cd07444 CRD_SFRP5 Cysteine-ric 100.0 1.6E-33 3.4E-38 217.9 6.6 101 33-136 3-123 (127)
19 cd07443 CRD_SFRP1 Cysteine-ric 100.0 5.1E-33 1.1E-37 214.3 6.8 100 32-135 2-121 (124)
20 cd07445 CRD_corin_1 One of two 100.0 4.4E-33 9.4E-38 216.1 5.7 100 34-134 2-128 (130)
21 cd07447 CRD_Carboxypeptidase_Z 100.0 4.1E-33 9E-38 215.8 5.3 98 35-134 2-123 (128)
22 cd07450 CRD_FZ6 Cysteine-rich 100.0 6.3E-33 1.4E-37 214.5 6.3 89 36-124 4-112 (127)
23 cd07452 CRD_sizzled Cysteine-r 100.0 1E-32 2.2E-37 216.7 7.4 101 34-137 6-126 (141)
24 cd07453 CRD_crescent Cysteine- 100.0 2E-32 4.2E-37 213.7 7.0 99 35-136 1-119 (135)
25 smart00063 FRI Frizzled. Droso 100.0 2.2E-32 4.8E-37 207.1 5.1 93 37-132 1-113 (113)
26 cd07455 CRD_Collagen_XVIII Cys 100.0 1.8E-30 4E-35 199.8 5.1 98 33-134 1-119 (123)
27 cd07451 CRD_SMO Cysteine-rich 100.0 7.5E-30 1.6E-34 198.5 6.6 98 34-134 2-119 (132)
28 KOG3577|consensus 100.0 1.1E-28 2.4E-33 228.4 8.8 108 31-138 37-165 (556)
29 cd07066 CRD_FZ CRD_domain cyst 99.9 5.4E-25 1.2E-29 164.9 5.2 97 36-133 1-118 (119)
30 PF01392 Fz: Fz domain; Inter 99.9 6.5E-24 1.4E-28 156.2 3.0 94 37-130 1-116 (116)
31 cd07459 CRD_TK_ROR_like Cystei 95.5 0.0068 1.5E-07 47.2 1.4 95 36-131 2-131 (135)
32 cd07468 CRD_TK_ROR2 Cysteine-r 83.1 0.43 9.3E-06 37.9 0.4 67 34-102 2-74 (140)
33 cd07467 CRD_TK_ROR1 Cysteine-r 80.9 0.77 1.7E-05 36.5 1.1 67 34-102 2-74 (142)
34 cd07469 CRD_TK_ROR_related Cys 75.7 1.3 2.8E-05 35.4 1.0 68 34-102 2-75 (147)
No 1
>cd07463 CRD_FZ9 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 9 (Fz9) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 9 (Fz9) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz9 may play a signaling role in lymphoid development and maturation, particularly at points where B cells undergo self-renewal prior to further differentiation.
Probab=100.00 E-value=2.1e-36 Score=233.84 Aligned_cols=104 Identities=48% Similarity=1.104 Sum_probs=96.5
Q ss_pred CCCCceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccccc---------
Q psy3004 33 PGGRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY--------- 103 (169)
Q Consensus 33 ~~~~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~--------- 103 (169)
++++|+||++++|++|+||.|+|||++||++|+||..++.+|.+|++++||+++++||||+|+|+|+.+..
T Consensus 1 ~~~~CepI~~~~C~~l~Yn~T~~PN~lgh~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCS~~~P~C~~~~~~~i~PCRsl 80 (127)
T cd07463 1 RAAKCQPVVIPMCRGIGYNLTRMPNFLGHDSQREAAIKLNEFAPLVEYGCHVHLRFFLCSLYAPMCTDQVSTSIPACRPM 80 (127)
T ss_pred CCCccccCChhhhCCCCcCcccCCcccCCcCHHHHHHHHHHHHHHHhcCCChhhHHHhhhccccccCCCCCCcCCccHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999987532
Q ss_pred ------------cccCCCCCCCCCCCCCCCCCCCCCCccCCcccc
Q psy3004 104 ------------KKYGFSWPDRMACDRLPELGDPNNLCMEQNEDQ 136 (169)
Q Consensus 104 ------------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~~~ 136 (169)
++||+.||+.|+|++||..++++.+||.++.++
T Consensus 81 Ce~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~~~~~C~~~~~~~ 125 (127)
T cd07463 81 CEQARQKCSPIMEQFNFGWPESLDCSRLPTRNDPNALCMEAPENA 125 (127)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCChhhCCCCCCCCcccCCCCccc
Confidence 289999999999999999998888999987654
No 2
>cd07462 CRD_FZ10 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 10 (Fz10) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 10 (Fz10) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. The cellular functon of Fz10 is unknown.
Probab=100.00 E-value=9.3e-36 Score=230.27 Aligned_cols=101 Identities=54% Similarity=1.166 Sum_probs=94.2
Q ss_pred CCceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccccc-----------
Q psy3004 35 GRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY----------- 103 (169)
Q Consensus 35 ~~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~----------- 103 (169)
++|+||++++|++|+||.|+|||++||++|+||..++.+|.+|++++||+++++||||+|+|+|+.+..
T Consensus 3 ~~C~pI~~~~C~~l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~C~p~l~~FlCsl~~P~C~~~~~~~i~PCRslCe 82 (127)
T cd07462 3 GRCQPIEIPMCKDIGYNMTRMPNLMGHENQREAAIQLHEFAPLVEYGCHSHLKFFLCSLYAPMCTEQVSTPIPACRVMCE 82 (127)
T ss_pred CeeeecChhhhCCCCcCceeCCcccCCcCHHHHHHHHHHHHHHhccCCChhhHHHHHhccccccCCCCCCcCCccHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999987432
Q ss_pred ----------cccCCCCCCCCCCCCCCCCCCCCCCccCCccc
Q psy3004 104 ----------KKYGFSWPDRMACDRLPELGDPNNLCMEQNED 135 (169)
Q Consensus 104 ----------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~~ 135 (169)
++||+.||+.|+|++||+.++++.+||.++.+
T Consensus 83 ~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~~~lc~~~~~~ 124 (127)
T cd07462 83 QARLKCSPIMEQFNFKWPDSLDCSKLPNKNDPNYLCMEAPNN 124 (127)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCcccCCCCCCCCcccCCCCCC
Confidence 28999999999999999998877899998654
No 3
>cd07460 CRD_FZ5 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 5 (Fz5) receptor.proteins. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 5 (Fz5) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz5 plays critical regulating roles in the yolk sac and placental angiogenesis, in the maturation of the Paneth cell phenotype, in governing the neural potential of progenitors in the developing retina, and in neuronal s
Probab=100.00 E-value=1e-35 Score=230.09 Aligned_cols=103 Identities=74% Similarity=1.457 Sum_probs=95.5
Q ss_pred CCCceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccccc----------
Q psy3004 34 GGRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY---------- 103 (169)
Q Consensus 34 ~~~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~---------- 103 (169)
+.+|+||++++|++++||.|+|||++||++|+||..++.+|.+|++++||+++++||||+|+|+|+.+..
T Consensus 2 ~~~CepI~~~~C~~l~Yn~T~~PN~lgh~~q~ea~~~~~~f~pLv~~~Csp~l~~FlCS~~~P~C~~~~~~~i~PCRslC 81 (127)
T cd07460 2 ALVCQEITVPMCKGIGYNLTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLRFFLCSMYTPICLPDYRKPLPPCRSVC 81 (127)
T ss_pred CCEecccChhhhCCCCCCcccCCCccCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccCccccCCCCCcCCccHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999976432
Q ss_pred -----------cccCCCCCCCCCCCCCCCCCCCCCCccCCcccc
Q psy3004 104 -----------KKYGFSWPDRMACDRLPELGDPNNLCMEQNEDQ 136 (169)
Q Consensus 104 -----------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~~~ 136 (169)
+.||+.||+.|+|++||+.++++.+||.++.+.
T Consensus 82 e~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~~~~~C~~~~~~~ 125 (127)
T cd07460 82 ERAKAGCSPLMRQYGFAWPERMNCDRLPVLGDPETLCMDYNRTE 125 (127)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCChhhCCCCCCCCCccCCCCCCC
Confidence 299999999999999999988788999877554
No 4
>cd07441 CRD_SFRP3 Cysteine-rich domain of the secreted frizzled-related protein 3 (SFRP3, alias FRZB), a Wnt antagonist. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related protein 3 (SFRP3, alias FRZB), which plays important roles in embryogenesis and postnatal development as an antagonist of Wnt proteins, key players in a number of fundamental cellular processes. SFRPs antagonize the activation of Wnt signaling by binding to the CRD domains of frizzled proteins (Fz), thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. SFRP3 regulates Wnt signaling activity in bone development and homeostasis. It is also involved in the control of planar cell polarity.
Probab=100.00 E-value=1.4e-35 Score=229.11 Aligned_cols=100 Identities=42% Similarity=0.940 Sum_probs=91.7
Q ss_pred CCCceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeecccccccc----c------
Q psy3004 34 GGRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDY----Y------ 103 (169)
Q Consensus 34 ~~~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~----~------ 103 (169)
+++|+||++++|++|+||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|+.+. .
T Consensus 1 ~a~CepI~~~~C~~l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCS~~~P~C~~~~~~~~i~PCRsl 80 (126)
T cd07441 1 AASCEPVRIPMCKSMPWNMTKMPNHLHHSTQANAVLAIEQFEGLLGTQCSPDLLFFLCAMYAPICTIDFQHEPIKPCKSV 80 (126)
T ss_pred CCcccccChhhhCCCCcCcccCCcccCCCCHHHHHHHHHHHHHHhcCCCCccchhHHhhccCcccCCCCCCCcCCccHHH
Confidence 468999999999999999999999999999999999999999999999999999999999999998742 1
Q ss_pred ------------cccCCCCCCCCCCCCCCCCCCCCCCccCCccc
Q psy3004 104 ------------KKYGFSWPDRMACDRLPELGDPNNLCMEQNED 135 (169)
Q Consensus 104 ------------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~~ 135 (169)
+.||+.||+.|+|++||..++ ++||.+...
T Consensus 81 Ce~vr~~C~~~m~~fg~~WP~~L~C~~fP~~~~--~~Ci~p~~~ 122 (126)
T cd07441 81 CERARAGCEPVLIRYRHTWPESLACEELPVYDR--GVCISPEAI 122 (126)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCcccCCCCCC--CcCcChhhh
Confidence 289999999999999999864 589987643
No 5
>cd07461 CRD_FZ8 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 8 (Fz8) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 8 (Fz8) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Xenopus Fz8 is important in Wnt/beta-catenin signaling pathways controlling the transcriptional activation of target genes Siamois and Xnr3 in the animal caps of late blastula.
Probab=100.00 E-value=2e-35 Score=227.85 Aligned_cols=101 Identities=74% Similarity=1.460 Sum_probs=94.2
Q ss_pred CCCceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccccc----------
Q psy3004 34 GGRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY---------- 103 (169)
Q Consensus 34 ~~~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~---------- 103 (169)
..+|++|++++|+++|||.|+|||++||++|+||..++.+|.+|++++||+++++||||+|+|+|+++..
T Consensus 2 ~~~C~pI~~~~C~~l~Yn~T~~PN~l~H~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCSl~~P~C~~~~~~~i~PCRslC 81 (125)
T cd07461 2 ELQCQEITVPLCKGIGYNYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYKKPLPPCRSVC 81 (125)
T ss_pred CCcccccCHHHhCCCCCCcccCCCccCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccCcccCCCCCCcCCccHHHH
Confidence 5689999999999999999999999999999999999999999999999999999999999999987532
Q ss_pred -----------cccCCCCCCCCCCCCCCCCCCCCCCccCCcc
Q psy3004 104 -----------KKYGFSWPDRMACDRLPELGDPNNLCMEQNE 134 (169)
Q Consensus 104 -----------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~ 134 (169)
+.||+.||+.|+|++||..++++.+||.++.
T Consensus 82 e~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~~~~C~~~~~ 123 (125)
T cd07461 82 ERAKAGCAPLMRQYGFPWPDRMRCDLLPEQGNPDTLCMDYNR 123 (125)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCChhhCCCCCCCCCccCCCCC
Confidence 2899999999999999999887889998754
No 6
>cd07457 CRD_FZ9_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 9. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 9 (Fz9) and frizzled 10 (Fz10) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=100.00 E-value=2e-35 Score=226.54 Aligned_cols=99 Identities=55% Similarity=1.225 Sum_probs=92.9
Q ss_pred CCceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccccc-----------
Q psy3004 35 GRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY----------- 103 (169)
Q Consensus 35 ~~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~----------- 103 (169)
++||||++++|++++||.|+|||++||++|+||..++..|.+|++++||+++++||||+|+|+|+.+..
T Consensus 1 ~~CepI~~~~C~~l~Yn~T~~PN~lgh~~q~ea~~~~~~~~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~~i~PCRslCe 80 (121)
T cd07457 1 GKCERITIPMCQGIGYNMTRMPNLLGHESQSEAAISIHEFAPLVQYGCAEHLRFFLCSLYAPMCTEQVSIPIPACRSMCE 80 (121)
T ss_pred CcCccCChHhhCCCCCCceeCCCcCCCcCHHHHHHHHHHHHHHHhcCCChhHHHHhhhccCcccCCCCCCcCCccHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999987532
Q ss_pred ----------cccCCCCCCCCCCCCCCCCCCCCCCccCCc
Q psy3004 104 ----------KKYGFSWPDRMACDRLPELGDPNNLCMEQN 133 (169)
Q Consensus 104 ----------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~ 133 (169)
+.||+.||+.|+|++||+.++++.+||.++
T Consensus 81 ~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~~~~c~~~~ 120 (121)
T cd07457 81 QARDKCSPIMEQFSFSWPDSLDCDRLPRKNDPKDLCMEAP 120 (121)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCcccCCCCCCCCCCcCCCC
Confidence 289999999999999999988888999875
No 7
>cd07442 CRD_SFRP4 Cysteine-rich domain of the secreted frizzled-related protein 4 (SFRP4), a Wnt antagonist. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related Protein 4 (SFRP4), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRDs domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs.
Probab=100.00 E-value=2.2e-35 Score=228.24 Aligned_cols=100 Identities=42% Similarity=0.968 Sum_probs=92.0
Q ss_pred CCCceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeecccccccc----c------
Q psy3004 34 GGRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDY----Y------ 103 (169)
Q Consensus 34 ~~~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~----~------ 103 (169)
+++|+||++++|++|+||.|+|||++||++|+||+.++.+|.+|++++||+++++||||+|+|+|+.+. .
T Consensus 2 ~a~CepI~i~~C~~l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCS~~~P~C~~~~~~~~i~PCRsl 81 (127)
T cd07442 2 GAPCEAVRIPMCRHMPWNITRMPNHLHHSTQENAVLAIEQYEELVDTGCSPVLPFFLCAMYAPICTLEFLYDPIKPCRSV 81 (127)
T ss_pred CCcccccChhhhCCCCcCcccCcCccCCCCHHHHHHHHHHHHHHHcCCCCcchHHHHHhhcCCccCCCCCCCcCCccHHH
Confidence 579999999999999999999999999999999999999999999999999999999999999998642 1
Q ss_pred ------------cccCCCCCCCCCCCCCCCCCCCCCCccCCccc
Q psy3004 104 ------------KKYGFSWPDRMACDRLPELGDPNNLCMEQNED 135 (169)
Q Consensus 104 ------------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~~ 135 (169)
+.||+.||+.|+|++||..++ ++||.+...
T Consensus 82 Ce~vr~~C~~~m~~fg~~WP~~L~C~~fP~~~~--~~Ci~p~~~ 123 (127)
T cd07442 82 CQRARDGCEPIMRRYNHSWPESLACDDLPVYDR--GVCISPEAI 123 (127)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCcccCCCCCC--CcccCHHHh
Confidence 289999999999999999764 589987654
No 8
>cd07466 CRD_FZ7 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 7 (Fz7) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 7 (Fz7) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Xenopus Fz7 is important in Wnt/beta-catenin signaling pathways controlling the transcriptional activation of target genes Siamois and Xnr3 in the animal caps of late blastula.
Probab=100.00 E-value=3.9e-35 Score=226.25 Aligned_cols=102 Identities=50% Similarity=1.100 Sum_probs=92.8
Q ss_pred CCCceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeecccccccc-c---------
Q psy3004 34 GGRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDY-Y--------- 103 (169)
Q Consensus 34 ~~~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~-~--------- 103 (169)
.++|+||++++|++|+||+|+|||++||++|+||..++..|.+|++++||+++++||||+|+|+|+... .
T Consensus 2 ~~~CepI~~~~C~~l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~i~PCRslCe 81 (125)
T cd07466 2 HGFCQPISIPLCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSPELKFFLCSMYAPVCTVLEQAIPPCRSLCE 81 (125)
T ss_pred CCccccCCHHHhCCCCCCcccCCcccCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccCCccCCCCCcCCCcHHHHH
Confidence 369999999999999999999999999999999999999999999999999999999999999997621 1
Q ss_pred ----------cccCCCCCCCCCCCCCCCCCCCCCCccCCcccc
Q psy3004 104 ----------KKYGFSWPDRMACDRLPELGDPNNLCMEQNEDQ 136 (169)
Q Consensus 104 ----------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~~~ 136 (169)
+.||+.||+.|+|++||+.++ +.+||.++...
T Consensus 82 ~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~-~~~Ci~~~~~~ 123 (125)
T cd07466 82 RARQGCEALMNKFGFQWPERLRCENFPVHGA-GEICVGQNTSD 123 (125)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCcccCCCCCC-CCcCcCCCCCC
Confidence 289999999999999999875 57999876554
No 9
>cd07448 CRD_FZ4 Cysteine-rich Wnt-binding domain of the frizzled 4 (Fz4) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 4 (Fz4) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and the Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Frizzled 4 (Fz4) activates the Ca(2+)/calmodulin-dependent protein kinase II and protein kinase C of the Wnt/Ca(2+) signaling pathway during retinal angiogenesis. Mutations in Fz4 lead to familial exudative vitreoretinopathy (FEVR
Probab=100.00 E-value=4.8e-35 Score=225.84 Aligned_cols=102 Identities=47% Similarity=1.054 Sum_probs=94.6
Q ss_pred CCceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccccc-----------
Q psy3004 35 GRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY----------- 103 (169)
Q Consensus 35 ~~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~----------- 103 (169)
.+|+||++++|++||||.|+|||++||++|+||+.+++.|.+|++++||+++++||||+|+|+|+.+..
T Consensus 2 ~~Cepi~~~~C~~l~Yn~T~~PN~lgh~sq~ea~~~l~~~~pLv~~~Csp~l~~flCsl~~P~C~~~~~~~i~PCRslCe 81 (126)
T cd07448 2 RRCEPIRIEMCQGLGYNVTRMPNLVGHELQTDAELQLQTFTPLIQYGCSSQLKFFLCSVYVPMCTEKVPVPIGPCRPLCL 81 (126)
T ss_pred CeeeeCCHHHhCCCCcccccCCCcCCCcCHHHHHHHHHHHHHHhhcCCChhHHhHhhhccccccCCCCCCcCCcCHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999986432
Q ss_pred ----------cccCCCCCCCCCCCCCCCCCCCCCCccCCcccc
Q psy3004 104 ----------KKYGFSWPDRMACDRLPELGDPNNLCMEQNEDQ 136 (169)
Q Consensus 104 ----------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~~~ 136 (169)
+.||+.||++|+|++||..++++.+||.++.+.
T Consensus 82 ~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~~~~C~~~~~~~ 124 (126)
T cd07448 82 SVKKRCLPVLKEFGFPWPEALNCSKFPPQNNHNHMCMEGPGDE 124 (126)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCcccCCCCCCCCCccCCCCCcC
Confidence 289999999999999999987778999987554
No 10
>cd07456 CRD_FZ5_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 5. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 5 (Fz5) and frizzled 8 (Fz8) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=100.00 E-value=6.8e-35 Score=223.36 Aligned_cols=98 Identities=80% Similarity=1.568 Sum_probs=92.0
Q ss_pred CceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccccc------------
Q psy3004 36 RCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY------------ 103 (169)
Q Consensus 36 ~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~------------ 103 (169)
+|+||++++|++++||.|+|||++||++|+||..++.+|.+|++++||+++++||||+|+|+|+.+..
T Consensus 1 ~Cepi~~~~C~~l~Yn~T~~PN~lgh~~q~ea~~~~~~~~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~~i~PCRslCe~ 80 (120)
T cd07456 1 KCEEITIPMCKGIGYNMTYMPNQFNHDTQEEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYDKPLPPCRSVCER 80 (120)
T ss_pred CccccChhhhCCCCCCcccCCCcCCCcCHHHHHHHHHHHHHHHhCCCChhHHHHhHhccCcccCCCCCCcCCccHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999987532
Q ss_pred ---------cccCCCCCCCCCCCCCCCCCCCCCCccCCc
Q psy3004 104 ---------KKYGFSWPDRMACDRLPELGDPNNLCMEQN 133 (169)
Q Consensus 104 ---------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~ 133 (169)
+.||+.||+.|+|++||+.++++.+||.++
T Consensus 81 vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~~~~C~~~~ 119 (120)
T cd07456 81 ARDGCAPIMRQYGFAWPERMSCDALPEGGDPDNLCMDRN 119 (120)
T ss_pred HHHHHHHHHHHhCCCCCCcCChhhCCCCCCCCCccCCCC
Confidence 289999999999999999998788999864
No 11
>cd07449 CRD_FZ3 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 3 (Fz3) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 3 (Fz3) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz3 plays a vital role in the anterior-posterior guidance of commissural axons. Knockout mice without Fz3 show defects in fiber tracts in the rostral CNS.
Probab=100.00 E-value=8.4e-35 Score=224.99 Aligned_cols=98 Identities=39% Similarity=0.887 Sum_probs=91.8
Q ss_pred CceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccccc------------
Q psy3004 36 RCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY------------ 103 (169)
Q Consensus 36 ~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~------------ 103 (169)
+|+||++++|+||+||.|+|||++||++|+||+.++++|.+|++++||+++++||||+|+|+|++.+.
T Consensus 4 ~CepI~~~~C~~l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCSly~P~C~~~~~~i~PCRslCe~v 83 (127)
T cd07449 4 SCEPITLRMCQDLPYNTTFMPNLLNHYDQQTAALAMEPFHPMVNLECSRDFRPFLCALYAPVCMEYGRVTLPCRRLCQRA 83 (127)
T ss_pred eeeeCChhhhCCCCCCcccCCcccCCcCHHHHHHHHHhhcccccCCcChhhHhHhheeeccccCCCCCCCCCCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999986432
Q ss_pred --------cccCCCCCCCCCCCCCCCCCCCCCCccCCc
Q psy3004 104 --------KKYGFSWPDRMACDRLPELGDPNNLCMEQN 133 (169)
Q Consensus 104 --------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~ 133 (169)
++||+.||+.|+|++||+.+++.-+|+++.
T Consensus 84 r~~C~~~m~~fg~~WP~~L~C~~fP~~~~~~~~c~~~~ 121 (127)
T cd07449 84 YSECSKLMEMFGVPWPEDMECSRFPDCDEPYPRLVDLS 121 (127)
T ss_pred HHHHHHHHHHhCCCCCCcCCcccCCCCCCCcccccccc
Confidence 289999999999999999988777999865
No 12
>cd07465 CRD_FZ1 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 1 (Fz1) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 1 (Fz1) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata.
Probab=100.00 E-value=9.5e-35 Score=224.62 Aligned_cols=102 Identities=51% Similarity=1.115 Sum_probs=93.1
Q ss_pred CCCceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccc-cc---------
Q psy3004 34 GGRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIED-YY--------- 103 (169)
Q Consensus 34 ~~~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~-~~--------- 103 (169)
.++|+||++++|++|+||.|+|||++||++|+||..++.+|.+|++++||+++++||||+|+|+|+.. ..
T Consensus 2 ~~~Cepi~~~~C~~l~Yn~T~~PN~lgh~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCSl~~P~C~~~~~~i~PCRslCe 81 (127)
T cd07465 2 HGYCQPISIPLCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSAELKFFLCSMYAPVCTVLEQALPPCRSLCE 81 (127)
T ss_pred CCeeeeCCHHHhCCCCCCcccCCcccCCCCHHHHHHHHHHHHHHHhCCCChhhHhHhhhccCCcccCCCCcCCccHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999762 11
Q ss_pred ----------cccCCCCCCCCCCCCCCCCCCCCCCccCCcccc
Q psy3004 104 ----------KKYGFSWPDRMACDRLPELGDPNNLCMEQNEDQ 136 (169)
Q Consensus 104 ----------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~~~ 136 (169)
++||+.||+.|+|++||..++ +.+||.++...
T Consensus 82 ~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~-~~~C~~~~~~~ 123 (127)
T cd07465 82 RARQGCEALMNKFGFQWPDTLRCEKFPVHGA-GELCVGQNTSE 123 (127)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCcccCCCCCC-CCcccCCCCCC
Confidence 289999999999999999875 67999877554
No 13
>cd07888 CRD_corin_2 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease . The cysteine-rich domain (CRD) is an essential component of corin, a type II transmembrane serine protease which functions as the convertase of the pro-atrial natriuretic peptide (pro-ANP) in the heart. Corin contains two CRDs in its extracellular region, which play an important role in recognition of the physiological substrate, pro-ANP. This model characterizes the second (C-terminal) CRD.
Probab=100.00 E-value=6.9e-35 Score=223.94 Aligned_cols=98 Identities=35% Similarity=0.715 Sum_probs=89.6
Q ss_pred CceecCcCcccCCCCCCccCCCCCCCCCHHHHHH--hhhhhhhhhccCCcccccccceeeeccccccccc----------
Q psy3004 36 RCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGL--EVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY---------- 103 (169)
Q Consensus 36 ~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~--~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~---------- 103 (169)
+|+||++++|++||||.|+|||++||++|+||+. ++..|.+|++++||+++++||||+|+|+|+.+..
T Consensus 1 ~CepI~~~~C~~l~Yn~T~~PN~lgH~sq~ea~~~~~~~~f~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~~i~PCRslC 80 (122)
T cd07888 1 QCEPITLELCMNLPYNTTRYPNYLGHRTQKEASISWESSLFPALVQTNCYKYLMFFACTILVPKCDPVTQQRIPPCRSLC 80 (122)
T ss_pred CCccCCHhhhCCCCcCcccCCcccCCCCHHHHHHhhhHHHHHhHHhcCCChhHHHHHHhccCccccCCCCCCCCCcHHHH
Confidence 5999999999999999999999999999999976 4569999999999999999999999999986422
Q ss_pred -----------cccCCCCCCCCCCCCCCCCCCCCCCccCCc
Q psy3004 104 -----------KKYGFSWPDRMACDRLPELGDPNNLCMEQN 133 (169)
Q Consensus 104 -----------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~ 133 (169)
+.||+.||+.|+|++||+.++++.+|+.++
T Consensus 81 e~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~~~~~C~~p~ 121 (122)
T cd07888 81 RNSKERCESVLGIVGLQWPEDTDCAQFPEENSDNQTCLLPD 121 (122)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCccccCCCCCCCCCcCCCCC
Confidence 289999999999999999987678999876
No 14
>cd07464 CRD_FZ2 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 2 (Fz2) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 2 (Fz2) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz2 is involved in the Wnt/beta-catenin signaling pathway and in the activation of protein kinase C and calcium/calmodulin-dependent protein kinase (CaM kinase).
Probab=100.00 E-value=1.1e-34 Score=224.22 Aligned_cols=102 Identities=49% Similarity=1.106 Sum_probs=92.9
Q ss_pred CCCceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccc-cc---------
Q psy3004 34 GGRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIED-YY--------- 103 (169)
Q Consensus 34 ~~~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~-~~--------- 103 (169)
.++|+||++++|++|+||+|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|+.. ..
T Consensus 2 ~~~CepI~~~~C~~l~Yn~T~~PN~lgH~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCSl~~P~C~~~~~~i~PCRslCe 81 (127)
T cd07464 2 HGFCQPISIPLCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSLELRFFLCSMYAPVCTVLEQAIPPCRSICE 81 (127)
T ss_pred CCccccCChhhhCCCCCCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHhhccCCccCCCCCcCCCcHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999762 11
Q ss_pred ----------cccCCCCCCCCCCCCCCCCCCCCCCccCCcccc
Q psy3004 104 ----------KKYGFSWPDRMACDRLPELGDPNNLCMEQNEDQ 136 (169)
Q Consensus 104 ----------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~~~ 136 (169)
++||+.||+.|+|++||+.+. +.+||+.+...
T Consensus 82 ~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~-~~~C~~~~~~~ 123 (127)
T cd07464 82 RARQGCEALMNKFGFQWPERLRCENFPRHGA-EQICVGQNHSE 123 (127)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCcccCCCCCC-CCcCCCCCCCC
Confidence 289999999999999999864 67999876554
No 15
>cd07454 CRD_LIN_17 Cysteine-rich domain (CRD) of LIN_17. A cysteine-rich domain (CRD) is an essential component of a number of cell surface receptors, which are involved in multiple signal transduction pathways, particularly in modulating the activity of the Wnt proteins, which play a fundamental role in the early development of metazoans. CRD is also found in secreted frizzled related proteins (SFRPs), which lack the transmembrane segment found in the frizzled protein. The CRD domain is also present in the alpha-1 chain of mouse type XVIII collagen, in carboxypeptidase Z, several receptor tyrosine kinases, and the mosaic transmembrane serine protease corin. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. CRD domains have also been identified in multiple tandem copies in a Dictyostelium discoideum protein. Very little is known about the mechanism by which CRD domains interact with the
Probab=100.00 E-value=1.1e-34 Score=223.52 Aligned_cols=98 Identities=34% Similarity=0.859 Sum_probs=90.7
Q ss_pred CCCceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccccc----------
Q psy3004 34 GGRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY---------- 103 (169)
Q Consensus 34 ~~~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~---------- 103 (169)
.++|+||++++|++|+||+|+|||++||++|+||+.+++.|.+|++++||+++++||||+|+|+|+.+..
T Consensus 2 ~~~C~Pi~~~~C~~l~Yn~T~~PN~lgh~~q~ea~~~~~~f~pLv~~~C~p~l~~FlCsl~~P~C~~~~~~~i~PCRslC 81 (124)
T cd07454 2 KGKCIPIDIELCKDLPYNYTYFPNTILHNDQHTLQTHTEHFKPLMKTKCHPHIHFFICSVFAPMCPIGMPQAVTSCKSVC 81 (124)
T ss_pred CCccccCChhhhCCCCcCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHhhcccccccCCCCCCcCCCChhHH
Confidence 4689999999999999999999999999999999999999999999999999999999999999987532
Q ss_pred -----------cccCCCCCCCCCCCCCCCCCCCCCCccCCcc
Q psy3004 104 -----------KKYGFSWPDRMACDRLPELGDPNNLCMEQNE 134 (169)
Q Consensus 104 -----------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~ 134 (169)
+.||+.||+.|+|++||+.+ ++||.+..
T Consensus 82 e~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~---~~C~~p~~ 120 (124)
T cd07454 82 EQVKADCFSILEEFGIGWPEPLNCAQFPDPP---ELCMKPTE 120 (124)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCChhhCCCCC---CCCCCcch
Confidence 29999999999999999874 48999764
No 16
>cd07458 CRD_FZ1_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 1. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 1 (Fz1), frizzled 2 (Fz2), and frizzled 7 (Fz7) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=100.00 E-value=2.8e-34 Score=219.75 Aligned_cols=98 Identities=52% Similarity=1.168 Sum_probs=90.0
Q ss_pred CCceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccc-cc----------
Q psy3004 35 GRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIED-YY---------- 103 (169)
Q Consensus 35 ~~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~-~~---------- 103 (169)
++|+||++++|++++||.|+|||++||++|+||..+++.|.+|++++||+++++||||+|+|+|+.. ..
T Consensus 1 ~~C~pi~~~~C~~l~Yn~T~~PN~lgh~~q~ea~~~l~~~~pLv~~~C~p~l~~FlCsl~~P~C~~~~~~i~PCRslCe~ 80 (119)
T cd07458 1 GKCEPITIPLCTDIPYNMTIFPNLLGHTKQEDAGLEVHQFYPLVKVQCSPDLKFFLCSVYAPVCTVLERPIPPCRSLCES 80 (119)
T ss_pred CccccCChHHhCCCCCCccCCCCccCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccccccCCCCCcCCccHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999999999752 21
Q ss_pred ---------cccCCCCCCCCCCCCCCCCCCCCCCccCCc
Q psy3004 104 ---------KKYGFSWPDRMACDRLPELGDPNNLCMEQN 133 (169)
Q Consensus 104 ---------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~ 133 (169)
++||+.||+.|+|++||+.++ +++||+++
T Consensus 81 vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~-~~~C~~~~ 118 (119)
T cd07458 81 ARQGCEALMNKFGFQWPESLDCEKFPVHGA-GDLCVGEN 118 (119)
T ss_pred HHHHHHHHHHHhCCCCCCCCCcccCCCCCC-CCcCCCCC
Confidence 289999999999999999874 57999754
No 17
>cd07446 CRD_SFRP2 Cysteine-rich domain of the secreted frizzled-related protein 2 (SFRP2), a regulator of Wnt activity. The cysteine-rich-domain (CRD) is an essential part of the secreted frizzled related protein 2 (SFRP2), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to CRD domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. As a Wnt antagonist, SFRP2 regulates Nkx2.2 expression in the ventral spinal cord and anteroposterior axis elongation. SFRP2 also has a Wnt-independent function as an enhancer of procollagen cleavage by the TLD proteinases. SFRP2 binds both procollagen and TLD, thus facilitating the enzymatic reaction by bringing togeth
Probab=100.00 E-value=1.6e-33 Score=218.02 Aligned_cols=98 Identities=35% Similarity=0.851 Sum_probs=89.8
Q ss_pred CCCceecC--cCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccccc--------
Q psy3004 34 GGRCEEIT--IPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY-------- 103 (169)
Q Consensus 34 ~~~CepI~--l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~-------- 103 (169)
.++|+||+ +++|++++||.|+|||++||+||+||..++.+|.+|++++||+++++||||+|+|+|+.+..
T Consensus 2 ~s~C~pI~~~l~~C~~l~Yn~T~~PN~lgH~sq~ea~~~~~~~~pLv~~~C~p~l~~FlCSl~~P~C~~~~~~~i~PCRs 81 (128)
T cd07446 2 KSNCKPIPANMLLCHGIEYTNMRLPNLLGHETMKEVLQQAGSWIPLVQKQCHPDTKKFLCSLFAPVCLDDLDEAIQPCRS 81 (128)
T ss_pred CCCceECCCCchhhcCCCCCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCChhhHHHhhhccCccccCCCCCcCCccHH
Confidence 57999998 89999999999999999999999999999999999999999999999999999999987421
Q ss_pred -------------cccCCCCCCCCCCCCCCCCCCCCCCccCCcc
Q psy3004 104 -------------KKYGFSWPDRMACDRLPELGDPNNLCMEQNE 134 (169)
Q Consensus 104 -------------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~ 134 (169)
+.||+.||+.|+|++||..+ ++||.+..
T Consensus 82 lCe~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~---~~Ci~~~~ 122 (128)
T cd07446 82 LCEAVKDGCAPVMSAFGFPWPDMLDCTRFPLDN---DLCIPPAG 122 (128)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcccCCCCC---CcccCccc
Confidence 28999999999999999964 48997653
No 18
>cd07444 CRD_SFRP5 Cysteine-rich domain of the secreted frizzled-related protein 5 (SFRP5), a regulator of Wnt activity. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related Protein 5 (SFRP5), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRD domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs.
Probab=100.00 E-value=1.6e-33 Score=217.90 Aligned_cols=101 Identities=29% Similarity=0.844 Sum_probs=92.2
Q ss_pred CCCCceecC--cCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccccc-------
Q psy3004 33 PGGRCEEIT--IPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY------- 103 (169)
Q Consensus 33 ~~~~CepI~--l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~------- 103 (169)
...+|++|+ +++|++|+||.|+|||++||++|+||..++.+|.+|++++||+++++||||+|+|+|++...
T Consensus 3 ~~~~C~pIp~~l~~C~~l~Yn~T~~PN~lgH~~q~ea~~~~~~~~pLv~~~C~p~l~~FlCSl~~P~C~~~~i~PCRslC 82 (127)
T cd07444 3 KQPQCVDIPADLPLCHNVGYKRMRLPNLLEHESMAEVKQQASSWVPLLAKRCHADTQVFLCSLFAPVCLDRPIYPCRSLC 82 (127)
T ss_pred CCCCceECCCCchhhcCCCCCceeCCcccCCCCHHHHHHHHHHHHHHHhcccCHHHHHHhhhhcCCCCCCCCCCCcHHHH
Confidence 467999998 89999999999999999999999999999999999999999999999999999999986433
Q ss_pred -----------cccCCCCCCCCCCCCCCCCCCCCCCccCCcccc
Q psy3004 104 -----------KKYGFSWPDRMACDRLPELGDPNNLCMEQNEDQ 136 (169)
Q Consensus 104 -----------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~~~ 136 (169)
+.||+.||+.|+|++||+.+ ++||....+.
T Consensus 83 e~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~---~~C~~~~~~~ 123 (127)
T cd07444 83 EAVRDSCAPVMESYGFPWPEMLHCHKFPLDN---DLCIAVQFGH 123 (127)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCChhhCCCCC---Cccccccccc
Confidence 28999999999999999865 4999977644
No 19
>cd07443 CRD_SFRP1 Cysteine-rich domain of the secreted frizzled-related protein 1 (SFRP1), a regulator of Wnt activity. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related protein 1 (SFRP1), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRDs domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. SFRP1 is expressed in many tissues and is involved in the regulation of Wnt signaling in osteoblasts, leading to enhanced trabecular bone formation in adults; it has also been shown to control the gro
Probab=99.98 E-value=5.1e-33 Score=214.26 Aligned_cols=100 Identities=28% Similarity=0.785 Sum_probs=91.0
Q ss_pred CCCCCceecC--cCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccccc------
Q psy3004 32 FPGGRCEEIT--IPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY------ 103 (169)
Q Consensus 32 ~~~~~CepI~--l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~------ 103 (169)
...++|++|+ +++|+|++||.|+|||++||++|+||..++.+|.+|++++||+++++||||+|+|+|++...
T Consensus 2 ~~~~~C~pIp~~l~~C~~l~Yn~T~~PN~lgH~sq~ea~~~~~~~~pLv~~~C~p~l~~FlCsl~~P~C~~~~i~PCRsl 81 (124)
T cd07443 2 TKPPQCVDIPADLRLCHNVGYKKMVLPNLLDHETMAEVKQQASSWVPLLNKNCHKGTQVFLCSLFAPVCLDRPVYPCRWL 81 (124)
T ss_pred CCCCCceECCCchhhhcCCCCCceeCccccCCCCHHHHHHHHHHHHHHHhccccHHHHHHhhheeccCCCCCCCCCCHHH
Confidence 3567999998 89999999999999999999999999999999999999999999999999999999986433
Q ss_pred ------------cccCCCCCCCCCCCCCCCCCCCCCCccCCccc
Q psy3004 104 ------------KKYGFSWPDRMACDRLPELGDPNNLCMEQNED 135 (169)
Q Consensus 104 ------------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~~ 135 (169)
++||+.||++|+|++||+.+ +||++..+
T Consensus 82 Ce~vr~~C~~~m~~~g~~WP~~L~C~~fP~~~----~ci~~~~~ 121 (124)
T cd07443 82 CEAVRDSCEPVMQFFGFYWPEMLKCDKFPEGE----VCIAMTPP 121 (124)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcccCCCCC----CccCCCCC
Confidence 28999999999999999763 69987653
No 20
>cd07445 CRD_corin_1 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease . The cysteine-rich domain (CRD) is an essential component of corin, a type II transmembrane serine protease which functions as the convertase of the pro-atrial natriuretic peptide (pro-ANP) in the heart. Corin contains two CRDs in its extracellular region, which play an important role in recognition of the physiological substrate, pro-ANP. This model characterizes the first (N-terminal) CRD.
Probab=99.98 E-value=4.4e-33 Score=216.07 Aligned_cols=100 Identities=25% Similarity=0.476 Sum_probs=89.9
Q ss_pred CCCceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeecccccccc-----c-----
Q psy3004 34 GGRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDY-----Y----- 103 (169)
Q Consensus 34 ~~~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~-----~----- 103 (169)
.++||||++++|++|+||+|+|||++||.+ +||+.++..|.+|++++||++|++||||+|+|+|++++ .
T Consensus 2 ~~~CepI~i~~C~~l~YN~T~~PN~lgh~~-~ea~~~l~~f~pLv~~~Csp~l~~FLCSlyaP~C~~~~~~~~~i~PCRs 80 (130)
T cd07445 2 TSACMNITHSQCQMLPYHSTLKPSLLSVKN-MEMEKFLKFFSYLHRLSCYQHIMLFGCSLALPECISDGDDRHGLLPCRS 80 (130)
T ss_pred CCccccCChhhhCCCCCccccCCccccccC-HHHHHHHHhhccccccCcChhhHHHhhhccCccccCCCCCCCcCCCCHH
Confidence 469999999999999999999999999988 59999999999999999999999999999999998752 1
Q ss_pred -------------cccCCCCCCCCCCCCCCCCCC----CCCCccCCcc
Q psy3004 104 -------------KKYGFSWPDRMACDRLPELGD----PNNLCMEQNE 134 (169)
Q Consensus 104 -------------~~~g~~WP~~L~C~~FP~~~d----~~~lCi~~~~ 134 (169)
+.||+.||+.|+|++||+.++ ..+.|++|.+
T Consensus 81 lCe~vr~~C~~~m~~fg~~WPe~L~C~~fP~~~~~~~~~~~~c~~~~~ 128 (130)
T cd07445 81 FCEAAKEGCEPVLGMVNASWPDFLRCSQFRNNTETAVENRALCFSPQQ 128 (130)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCCccccCCCCCCcccccccccChhc
Confidence 289999999999999999987 2457887653
No 21
>cd07447 CRD_Carboxypeptidase_Z Cysteine-rich domain of carboxypeptidase Z, a member of the carboxypeptidase E family. The cysteine-rich-domain (CRD) is an essential part of carboxypeptidase Z, a member of the carboxypeptidase E family of metallocarboxypeptidases. This is a group of Zn-dependent enzymes implicated in the intra- and extracellular processing of proteins. Carboxypeptidase Z removes C-terminal basic amino acid residues from its substrates, particularly arginine. The CRD acts as a ligand-binding domain for Wnts involved in developmental processes. CPZ binds and may process Wnt-4, CPZ has also been found to enhance the induction of the homeobox gene Cdx1. During vertebrate embryogenesis, the CRD of CPZ upregulates Pax3, a Wnt reporter gene essential for patterning of somites and limb development.
Probab=99.97 E-value=4.1e-33 Score=215.76 Aligned_cols=98 Identities=22% Similarity=0.563 Sum_probs=87.8
Q ss_pred CCceecCcCcccCCCCCCccCCCCCCCCCHHHHHHh-----hhhhhhhhccCCcccccccceeeeccccccccc------
Q psy3004 35 GRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLE-----VHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY------ 103 (169)
Q Consensus 35 ~~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~-----l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~------ 103 (169)
.+|++|++++|++|+||.|+|||++||++|++|++. +..|.+|++++||+++++||||+|+|+|+.+..
T Consensus 2 ~~CepI~~~~C~~l~Yn~T~~PN~lgH~sq~~~~~~~~~~~l~~f~pLv~~~C~p~l~~FLCSl~~P~C~~~~~i~PCRs 81 (128)
T cd07447 2 ATCTDLLLSYCSDVSYTQTTFPNLLGHRSREVTEAGAEYLLLSVLHGLLGGECNPDIRLLGCSVLAPRCENDKVIKPCRS 81 (128)
T ss_pred CcccCCChhhcCCCCCCcccCCcccCCCCHHHHHhhhhHhHHHHHhhhhhcCcChhHHhHhhcccccccCCCCccCCCHH
Confidence 589999999999999999999999999999987643 788999999999999999999999999986543
Q ss_pred -------------cccCCCCCCCCCCCCCCCCCCCCCCccCCcc
Q psy3004 104 -------------KKYGFSWPDRMACDRLPELGDPNNLCMEQNE 134 (169)
Q Consensus 104 -------------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~ 134 (169)
+.||+.||++|+|++||.... +.|++|.+
T Consensus 82 lCe~vr~~C~~~m~~fg~~WP~~L~C~~fP~~~~--~~c~~~~~ 123 (128)
T cd07447 82 TCEALRKRCSHAFDAIQMAWPYFLDCDRFFAGEQ--EGCYDPLE 123 (128)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCccccCCCccC--CCccChHH
Confidence 289999999999999998753 57998764
No 22
>cd07450 CRD_FZ6 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 6 (Fz6) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 6 (Fz6) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Frizzled 6 (Fz6) is expressed in the skin and hair follicles and controls hair patterning in mammals using a Fz-dependent tissue polarity system, which is similar to the one that patterns the Drosophila cuticle.
Probab=99.97 E-value=6.3e-33 Score=214.54 Aligned_cols=89 Identities=40% Similarity=0.899 Sum_probs=83.9
Q ss_pred CceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccccc------------
Q psy3004 36 RCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY------------ 103 (169)
Q Consensus 36 ~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~------------ 103 (169)
+||||++++|+||+||.|+|||++||++|+||..++..|.+|++++||+++++||||+|+|+|++...
T Consensus 4 ~CepI~~~~C~~l~YN~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCS~~~P~C~~~~~~i~PCRslCe~v 83 (127)
T cd07450 4 TCEPITVPRCLKMPYNMTFFPNLMGHYDQDIAAVEMEPFLPLANLRCSPNVHTFLCQAFVPTCTEQIHVVRPCRELCEKV 83 (127)
T ss_pred eeeeCChhhcCCCCCCcccCCcccCCcCHHHHHHHHHHHHhHhccCCChhhhhheeeeecccccCCCCcCCCCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999987421
Q ss_pred --------cccCCCCCCCCCCCCCCCCCC
Q psy3004 104 --------KKYGFSWPDRMACDRLPELGD 124 (169)
Q Consensus 104 --------~~~g~~WP~~L~C~~FP~~~d 124 (169)
+.||+.||++|+|++||..++
T Consensus 84 r~~C~~~m~~fg~~WP~~L~C~~fP~~~~ 112 (127)
T cd07450 84 YSDCKKLIDTFGISWPEELECDRLQYCDE 112 (127)
T ss_pred HHHHHHHHHHhCCCCCCcCCcccCCCCCC
Confidence 289999999999999998764
No 23
>cd07452 CRD_sizzled Cysteine-rich domain of the sizzled protein. The cysteine-rich domain (CRD) is an essential part of the sizzled protein, which regulates bone morphogenetic protein (Bmp) signaling by stabilizing chordin, and plays a critical role in the patterning of vertebrate and invertebrate embryos. Sizzled also functions in the ventral region as a Wnt inhibitor and modulates canonical Wnt signaling. Sizzled proteins belong to the secreted frizzled-related protein family (SFRP), and have be identified in the genomes of birds, fishes and frogs, but not mammals.
Probab=99.97 E-value=1e-32 Score=216.66 Aligned_cols=101 Identities=27% Similarity=0.744 Sum_probs=92.0
Q ss_pred CCCceecC--cCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccccc--------
Q psy3004 34 GGRCEEIT--IPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY-------- 103 (169)
Q Consensus 34 ~~~CepI~--l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~-------- 103 (169)
..+|++|+ +++|++|+||.|+|||++||++|+||..++.+|.+|++++||+++++||||+|+|+|++...
T Consensus 6 s~~C~pIp~~l~~C~~l~Yn~T~~PN~lgH~sq~ea~~~~~~f~pLv~~~C~p~l~~FlCSl~~P~C~~~~i~PCRslCe 85 (141)
T cd07452 6 STKCVPIPPEMSMCQDVGYSEMRLPNLLGHTSMAEVVPKSADWQTLLHTGCHPHARTFLCSLFAPVCLDTFIQPCRSMCV 85 (141)
T ss_pred CCcceeCCCcchhhcCCCCCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHhHhhcccCCCCCCCcCCHHHHH
Confidence 35999997 89999999999999999999999999999999999999999999999999999999986543
Q ss_pred ----------cccCCCCCCCCCCCCCCCCCCCCCCccCCccccC
Q psy3004 104 ----------KKYGFSWPDRMACDRLPELGDPNNLCMEQNEDQA 137 (169)
Q Consensus 104 ----------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~~~~ 137 (169)
++||+.||++|+|++||..+ ++|+++.....
T Consensus 86 ~vr~~C~~~m~~fg~~WP~~L~C~~fP~~~---~~C~~~~~~~~ 126 (141)
T cd07452 86 AVRDSCAPVLACHGHSWPESLDCDRFPAGE---DMCLASLSKEY 126 (141)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCcccCCCCC---CccCCCCcccc
Confidence 27999999999999999874 48999876543
No 24
>cd07453 CRD_crescent Cysteine-rich domain of the crescent protein. The cysteine-rich domain (CRD) is an essential part of the crescent protein, a member of the secreted frizzled-related protein (SFRP) family, which regulates convergent extension movements (CEMs) during gastrulation and neurulation. Xenopus laevis crescent efficiently forms inhibitory complexes with Wnt5a and Wnt11, but this effect is cancelled in the presence of another member of the SFRP family, Frzb1. A potential role for Crescent in head formation is to regulate a non-canonical Wnt pathway positively in the adjacent posterior mesoderm, and negatively in the overlying anterior neuroectoderm.
Probab=99.97 E-value=2e-32 Score=213.70 Aligned_cols=99 Identities=31% Similarity=0.782 Sum_probs=89.1
Q ss_pred CCceecC--cCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccccc---------
Q psy3004 35 GRCEEIT--IPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY--------- 103 (169)
Q Consensus 35 ~~CepI~--l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~--------- 103 (169)
++|++|+ +++|++|+||.|+|||++||+||+||..++.+|.+|++++||+++++||||+|+|+|++...
T Consensus 1 ~~C~~iP~~l~~C~~l~Yn~T~~PN~lgH~sq~ea~~~~~~~~pLv~~~C~p~l~~FLCSl~~P~C~~~~i~PCRslCe~ 80 (135)
T cd07453 1 SPCMRIPKSMALCYDIGYSEMRIPNLLEHETMAEVIQQSSSWLPLLARECHPDARIFLCSLFAPICWDRPIYPCRSLCEA 80 (135)
T ss_pred CCCccCCCcchhhCCCCCCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCChhhHHHhhhhcCccCCCCCCCccHHHHHH
Confidence 4798887 78999999999999999999999999999999999999999999999999999999984432
Q ss_pred ---------cccCCCCCCCCCCCCCCCCCCCCCCccCCcccc
Q psy3004 104 ---------KKYGFSWPDRMACDRLPELGDPNNLCMEQNEDQ 136 (169)
Q Consensus 104 ---------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~~~ 136 (169)
+.||+.||+.|+|++||+.+ ++||.+....
T Consensus 81 vr~~C~~~m~~~g~~WP~~l~C~~fP~~~---~~Ci~p~~~~ 119 (135)
T cd07453 81 VRSSCAPLMACYGYPWPEILHCDKFPVDH---DLCISPQFID 119 (135)
T ss_pred HHHHHHHHHHHhCCCCCCCCChhhCCCCC---CcccCCCCCC
Confidence 28999999999999999864 5999976543
No 25
>smart00063 FRI Frizzled. Drosophila melanogaster frizzled mediates signalling that polarises a precursor cell along the anteroposterior axis. Homologues of the N-terminal region of frizzled exist either as transmembrane or secreted molecules. Frizzled homologues are reported to be receptors for the Wnt growth factors. (Not yet in MEDLINE: the FRI domain occurs in several receptor tyrosine kinases [Xu, Y.K. and Nusse, Curr. Biol. 8 R405-R406 (1998); Masiakowski, P. and Yanopoulos, G.D., Curr. Biol. 8, R407 (1998)].
Probab=99.97 E-value=2.2e-32 Score=207.11 Aligned_cols=93 Identities=59% Similarity=1.256 Sum_probs=86.9
Q ss_pred ceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccccc-------------
Q psy3004 37 CEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY------------- 103 (169)
Q Consensus 37 CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~------------- 103 (169)
|+||++++|++++||.|+|||++||++|+||..++..|.+|++++||+++++||||+|+|+|++...
T Consensus 1 C~pi~~~~C~~l~Yn~T~~PN~l~h~~q~ea~~~l~~~~~L~~~~C~p~l~~flCsl~~P~C~~~~~~~~PCRs~Ce~vr 80 (113)
T smart00063 1 CEPITIPLCKDLGYNLTSMPNLLGHTTQEEAGLELEQFHPLLNVQCSPDLRFFLCSVYAPICTEDLRPILPCRSLCEAAR 80 (113)
T ss_pred CcCCCcHhHCCCCcccccCCCccCCCCHHHHHHHHHHHHhhccCCCChhHHHHhHhccCcccCCCCCcCCcCHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999987543
Q ss_pred -------cccCCCCCCCCCCCCCCCCCCCCCCccCC
Q psy3004 104 -------KKYGFSWPDRMACDRLPELGDPNNLCMEQ 132 (169)
Q Consensus 104 -------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~ 132 (169)
++||+.||++|+|++||+.+ ++||.+
T Consensus 81 ~~C~~~~~~~g~~WP~~l~C~~fP~~~---~~C~~~ 113 (113)
T smart00063 81 EGCEPLMEKFGFPWPEFLRCDRFPVQE---ELCMDP 113 (113)
T ss_pred HHHHHHHHHhCCCCCCcCCcccCCCCC---CCCCCc
Confidence 27999999999999999986 489863
No 26
>cd07455 CRD_Collagen_XVIII Cysteine-rich domain of the variant 3 of collagen XVIII (V3C18 ). The cysteine-rich domain (CRD) is an essential part of the variant 3 of collagen XVIII (V3C18), which regulates major cellular functions such as the differential epithelial morphogenesis of early lung and kidney development. V3C18 is a 170 kD protein, which is proteolotically processed into the CRD-containing 50 kD glucoprotein precursor that binds Wnt3a through its CRD domain and suppresses the Wnt3a-induced stabilization of beta catenin. Full-length V3C18 is unable to inhibit Wnt signaling.
Probab=99.96 E-value=1.8e-30 Score=199.84 Aligned_cols=98 Identities=29% Similarity=0.574 Sum_probs=87.2
Q ss_pred CCCCceec--CcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeecccccccccc------
Q psy3004 33 PGGRCEEI--TIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYYK------ 104 (169)
Q Consensus 33 ~~~~CepI--~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~~------ 104 (169)
+..+|++| .+++|++|+||+|+|||++||+||+||+.++.+|.+|++++||+++++||||+|+|+|+.+..+
T Consensus 1 ~~~~C~pIp~~l~~C~~l~Yn~t~~PN~lgH~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCs~~~P~C~~~~~~~i~PCR 80 (123)
T cd07455 1 PRPRCLPVPSSLPFCSRLGIRSFWLPNFLNHTSVEEVRAVLAEWAWLLESGCHPSLEWFFCLLLVPSCGGGPPPPPPPCR 80 (123)
T ss_pred CCCCCccCCCccccccCCCcccccCCcccCCCCHHHHHHHHHHHHHHHhCCCChhhHHHhhhccCCcccCCCCCcCCccH
Confidence 45699999 7999999999999999999999999999999999999999999999999999999999875421
Q ss_pred -------------ccCCCCCCCCCCCCCCCCCCCCCCccCCcc
Q psy3004 105 -------------KYGFSWPDRMACDRLPELGDPNNLCMEQNE 134 (169)
Q Consensus 105 -------------~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~ 134 (169)
+-++.|| |+|++||+.++ ++|+....
T Consensus 81 slCe~vr~~C~~~m~~fg~p--l~C~~fP~~~~--~~C~~~~~ 119 (123)
T cd07455 81 QFCEVLQDSCWNLLEGGRLP--VACASLPEQED--GYCVLIGP 119 (123)
T ss_pred HHHHHHHHHHHHHHHccCCC--ChHHHCCCCCC--cccccCCC
Confidence 3456677 99999999874 68998654
No 27
>cd07451 CRD_SMO Cysteine-rich domain of the smoothened receptor (Smo) integral membrane protein. The cysteine-rich domain (CRD) is part of the smoothened receptor (Smo), an integral membrane protein and one of the key players in the Hedgehog (Hh) signaling pathway, critical for development, cell growth and migration, as well as stem cell maintenance. The CRD of Smo is conserved in vertebrates and can also be identified in invertebrates. The precise function of the CRD in Smo is unknown. Mutations in the Drosophila CRD disrupt Smo activity in vivo, while deletion of the CRD in mammalian cells does not seem to affect the activity of overexpressed Smo.
Probab=99.96 E-value=7.5e-30 Score=198.52 Aligned_cols=98 Identities=24% Similarity=0.491 Sum_probs=87.1
Q ss_pred CCCceecCcCcccC--CCCCCccCCCCCCCCCHHHHHHhhhhhhhhhcc-CCcccccccceeeecccccccccc------
Q psy3004 34 GGRCEEITIPMCKG--IGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEI-KCSSDLKFFLCSMYTPICIEDYYK------ 104 (169)
Q Consensus 34 ~~~CepI~l~~C~~--L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~-~Cs~~l~~FLCSly~P~C~~~~~~------ 104 (169)
.++|+||++++|+| ||||+|+|||++||+||+||+.++..|.+|+++ +||++|++||||+|+|+|+.+...
T Consensus 2 ~~~Cepi~~~~C~g~~lpYn~T~~PN~~~h~tq~ea~~~l~~f~pLv~vp~C~~~l~~FLCSly~P~C~~~~~~~PCRsl 81 (132)
T cd07451 2 PAKCEPLKNTTCLGSKLPYTYTSLDLVPDSTTQEEVQEKLHLWSGLRNVPKCWAVIQPLLCALYMPKCENGKVELPSQEM 81 (132)
T ss_pred CceeeECCccccCCCCCCccceecCCccCCcCHHHHHHHHHHHHHHHhhcccchhheeeeEeeECCcCCCCCccCCCHHH
Confidence 46999999999987 999999999999999999999999999999999 999999999999999999864320
Q ss_pred -----------ccCCCCCCCCCCCCCCCCCCCCCCccCCcc
Q psy3004 105 -----------KYGFSWPDRMACDRLPELGDPNNLCMEQNE 134 (169)
Q Consensus 105 -----------~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~ 134 (169)
+.++.||++|+|++||... +.|.++..
T Consensus 82 Ce~vr~~C~~~m~~~~WP~~L~C~~~p~~~---~~C~~~~~ 119 (132)
T cd07451 82 CQATRGPCKIVENERGWPDFLRCDNDRFPP---RGCKNDVR 119 (132)
T ss_pred HHHHHHHHHHHHHcCCCCCcCcCCCCCCcc---ccCCCHHH
Confidence 4456899999999999984 46887543
No 28
>KOG3577|consensus
Probab=99.95 E-value=1.1e-28 Score=228.41 Aligned_cols=108 Identities=50% Similarity=1.071 Sum_probs=98.5
Q ss_pred CCCCCCceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccccc-------
Q psy3004 31 LFPGGRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY------- 103 (169)
Q Consensus 31 ~~~~~~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~------- 103 (169)
.....+|+||++++|++++||+|.|||+++|++|+||+.++.+|.+|++.+||+++++||||+|+|+|++...
T Consensus 37 ~~~~~~c~pi~i~~C~~i~Yn~T~~PNll~H~tQ~ea~~~~~~f~PLv~~~Cs~~l~~FLCS~y~P~C~~~~d~pi~PCR 116 (556)
T KOG3577|consen 37 AAGKARCEPITIPMCQGLGYNMTAMPNLVGHETQEEAGLKLHQFHPLVALRCSPGLRFFLCSLYAPMCTEDLDRPILPCR 116 (556)
T ss_pred ccccccccceeccccCCCCCCcccCCccccchhHHHhhhcccccCCccccccchhhhhHhhcCCCCcCccccCcccCccH
Confidence 3455789999999999999999999999999999999999999999999999999999999999999985332
Q ss_pred --------------cccCCCCCCCCCCCCCCCCCCCCCCccCCccccCC
Q psy3004 104 --------------KKYGFSWPDRMACDRLPELGDPNNLCMEQNEDQAA 138 (169)
Q Consensus 104 --------------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~~~~~ 138 (169)
++|||.||+.|+|++||..++.+++||+++.+..+
T Consensus 117 slCe~ar~~Ce~~m~~~gf~WPe~L~C~~fp~~~~~~~~C~~~~~~~~~ 165 (556)
T KOG3577|consen 117 SLCEAAREGCEPLMEMFGFPWPEFLRCDKFPVPDSAGELCMGPPSEGFA 165 (556)
T ss_pred HHHHHHhcccHHHHHhcCCCCCccccCCCCCCCCCccccccCCcccccc
Confidence 29999999999999999998778899999877544
No 29
>cd07066 CRD_FZ CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain. CRD_FZ is an essential component of a number of cell surface receptors, which are involved in multiple signal transduction pathways, particularly in modulating the activity of the Wnt proteins, which play a fundamental role in the early development of metazoans. CRD is also found in secreted frizzled related proteins (SFRPs), which lack the transmembrane segment found in the frizzled protein. The CRD domain is also present in the alpha-1 chain of mouse type XVIII collagen, in carboxypeptidase Z, several receptor tyrosine kinases, and the mosaic transmembrane serine protease corin. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. CRD domains have also been identified in multiple tandem copies in a Dictyostelium discoideum protein. Very little is known about the mechanism by which CRD domains interact wit
Probab=99.91 E-value=5.4e-25 Score=164.93 Aligned_cols=97 Identities=43% Similarity=1.021 Sum_probs=89.6
Q ss_pred CceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeecccccccc--c----------
Q psy3004 36 RCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDY--Y---------- 103 (169)
Q Consensus 36 ~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~--~---------- 103 (169)
+|+||+.++|++++||.|.|||.+||.+|+||+..+..|.+|+..+||+++++|+|++|+|+|.... .
T Consensus 1 ~C~pi~~~~C~~~~Yn~t~~pn~~~~~~~~~a~~~~~~~~~l~~~~C~~~~~~f~Cs~~~P~C~~~~~~~~~PCRs~Cee 80 (119)
T cd07066 1 KCEPIPLPLCRGLPYNTTRFPNLLGHESQEEAEQELESFTPLVNSGCHPDLRFFLCSLYFPECTPDGDRPIPPCRSLCEE 80 (119)
T ss_pred CCccCCHHHhCCCCCCceeCCCccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHhccCccccCCCCCcCCChHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999999998865 2
Q ss_pred ---------cccCCCCCCCCCCCCCCCCCCCCCCccCCc
Q psy3004 104 ---------KKYGFSWPDRMACDRLPELGDPNNLCMEQN 133 (169)
Q Consensus 104 ---------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~ 133 (169)
..+++.||..++|++||+.++ ++.|+.++
T Consensus 81 v~~~C~~~~~~~~~~wp~~~~C~~~p~~~~-~~~C~~p~ 118 (119)
T cd07066 81 VRDSCEPLMLAFGFPWPEPLDCDRFPDSNE-EGLCISPP 118 (119)
T ss_pred HHHHHHHHHHHhCCCCCCcCCccccCCCCC-CCcCCCCC
Confidence 178999999999999999865 46899865
No 30
>PF01392 Fz: Fz domain; InterPro: IPR020067 The frizzled (fz) domain is an extracellular domain of about 120 amino acids.It was first identified in the alpha-1 chain of type XVIII collagen and in members of the Frizzled family of seven transmembrane (7TM) proteins which act as receptors for secreted Wingless (Wg)/Wnt glycoproteins []. In addition to these proteins, one or two copies of the fz domain are also found [, , , , ] in: The frizbee (Frzb) family; secreted frizzled-like proteins. Smoothened; another 7TM receptor involved in hedgehog signaling. Carboxpeptidase Z (CPZ). Transmembrane serine protease corin. Two receptor tyrosine kinases (RTKs) subfamilies, the Ror family and the muscle-specific kinase (MuSK) family. As the fz domain contains 10 cysteines which are largely conserved, it has also been called cysteine-rich domain (CRD) []. The fz domain also contains several other highly conserved residues, for example, a basic amino acid follows C6, and a conserved proline residues lies four residues C-terminal to C9 []. The crystal structure of a fz domain shows that it is predominantly alpha-helical with all cysteines forming disulphide bonds. In addition to helical regions, two short beta-strands at the N terminus form a minimal beta-sheet with the second beta sheet passing through a knot created by disulphide bonds []. Several fz domains have been shown to be both necessary and sufficient for Wg/Wnt ligand binding, strongly suggesting that the fz domain is a Wg/Wnt interacting domain [, ].; GO: 0005515 protein binding; PDB: 1IJX_E 3HKL_B 1IJY_B 4F0A_A.
Probab=99.88 E-value=6.5e-24 Score=156.19 Aligned_cols=94 Identities=40% Similarity=0.845 Sum_probs=80.6
Q ss_pred ceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccccc-------------
Q psy3004 37 CEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY------------- 103 (169)
Q Consensus 37 CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~------------- 103 (169)
|+||++++|++++||.|.|||.+||.+|++++.++..|..|++.+||++++.|||++|+|.|.++..
T Consensus 1 C~pi~~~~C~~~~y~~t~~pn~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~flC~~~~P~C~~~~~~~~~~pCr~~C~~ 80 (116)
T PF01392_consen 1 CEPITLSFCRGLPYNQTSFPNSLGHQTQDEASQQLNAFSTLVNSGCHPYLRPFLCSLYFPPCDEGGPTPPLPPCRSLCEE 80 (116)
T ss_dssp EEE---GGGTTSS-TEEESSETTTSSSHHHHHHHHHCCHHHHCCTSHTTHHHHHHHHHS-BBBSSSSSSB-EB-HHHHHH
T ss_pred CccCChHHhcCCCCCceEeecccCCcCHHHHHHHHHHHHHHhcchhhHHHhhhhhcccCCcCCCCCcccccCCCHHHccc
Confidence 8999999999999999999999999999999999999999999999999999999999999987663
Q ss_pred ---------cccCCCCCCCCCCCCCCCCCCCCCCcc
Q psy3004 104 ---------KKYGFSWPDRMACDRLPELGDPNNLCM 130 (169)
Q Consensus 104 ---------~~~g~~WP~~L~C~~FP~~~d~~~lCi 130 (169)
..+++.||+.++|++||..+++++.||
T Consensus 81 v~~~C~~~~~~~~~~~~~~~~C~~lP~~~~~~~~C~ 116 (116)
T PF01392_consen 81 VKSSCSPELENLGLGWPSFLDCSNLPESNSDSESCI 116 (116)
T ss_dssp HHHHHHHHHHHTTTTTSGGG-GGGSS-TTTSTTCCB
T ss_pred cccccHHHHHHhcCCCCCCCCcccCCCCCCCCCCCC
Confidence 167999999999999999987567886
No 31
>cd07459 CRD_TK_ROR_like Cysteine-rich domain of tyrosine kinase-like orphan receptors. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror) proteins, a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=95.48 E-value=0.0068 Score=47.21 Aligned_cols=95 Identities=19% Similarity=0.314 Sum_probs=56.4
Q ss_pred CceecCcCcccC-CCCCCccCCCCCCCCCHHHHHH-hhhhhhhh--hccCCcccccccceeeecccccccccc-------
Q psy3004 36 RCEEITIPMCKG-IGYNLTQMPNEMNHDTQDEAGL-EVHQFWPL--VEIKCSSDLKFFLCSMYTPICIEDYYK------- 104 (169)
Q Consensus 36 ~CepI~l~~C~~-L~Yn~T~~PN~lgH~sq~Ea~~-~l~~f~~L--v~~~Cs~~l~~FLCSly~P~C~~~~~~------- 104 (169)
.|++-.-..|.+ |+-+...+.+.....++++... .+..+... +.-.|.++...+||..++|.|.+....
T Consensus 2 ~C~~Y~G~vC~~~L~~~~Vyv~~~~~q~~~e~~l~~~~~~i~~~~~ls~~C~~~a~~~lC~~~FP~C~~~~~~~~p~~iC 81 (135)
T cd07459 2 YCQPYRGSVCAKYLGNKSVYVTSKQTQEDIEEQLSAAFTVISTSSDVSPKCQQYALPSLCYYAFPLCDEGSSTPKPRRIC 81 (135)
T ss_pred cCccccchhhHHhcCCCeEEEeCCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhCCCCCCCCCCCCCCccc
Confidence 577777788887 4533344444444444332222 22222222 455999999999999999999764320
Q ss_pred -----------------------ccCCCCCCCCCCCCCCCCCC-CCCCccC
Q psy3004 105 -----------------------KYGFSWPDRMACDRLPELGD-PNNLCME 131 (169)
Q Consensus 105 -----------------------~~g~~WP~~L~C~~FP~~~d-~~~lCi~ 131 (169)
..|..+. .-+|+++|..+. ....|+.
T Consensus 82 re~C~~l~~~~C~~E~~~~~~~~~~g~~~~-lp~C~~LP~~~~~~~~~C~~ 131 (135)
T cd07459 82 RDECELLENDLCKKEYAIAKRHPLIGHQLL-LPDCSSLPSPGSPESSNCIR 131 (135)
T ss_pred HHHHHHHHHhHhHHHHHHHHhCcccCCccC-CCCccCCCCCCCCCCCCCee
Confidence 3342222 468999998863 1345764
No 32
>cd07468 CRD_TK_ROR2 Cysteine-rich domain of tyrosine kinase-like orphan receptor 2. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror2), a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=83.12 E-value=0.43 Score=37.89 Aligned_cols=67 Identities=18% Similarity=0.271 Sum_probs=41.6
Q ss_pred CCCceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhh------hccCCcccccccceeeecccccccc
Q psy3004 34 GGRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPL------VEIKCSSDLKFFLCSMYTPICIEDY 102 (169)
Q Consensus 34 ~~~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~L------v~~~Cs~~l~~FLCSly~P~C~~~~ 102 (169)
.+-|++-.-..|+..-=|.+.|=+.. .+|.+++.++.....+ +...|.++...+||...||.|....
T Consensus 2 ~G~C~~Y~G~vC~~yL~~~~V~v~~~--~~~~~ie~~l~aa~~~i~~s~~ls~~Cr~~A~~~LC~~~Fp~C~~~~ 74 (140)
T cd07468 2 DGFCQPYRGIACARFIGNRTIYVDSL--QMQGEIENRITAAFTMIGTSTHLSDQCSQFAIPSFCHFVFPLCDDRS 74 (140)
T ss_pred CCcceeccChHHHHHhCCCeEEEecC--CchHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHcCCCCCCCC
Confidence 35688888888887433342222221 2444554444432222 3349999999999999999997643
No 33
>cd07467 CRD_TK_ROR1 Cysteine-rich domain of tyrosine kinase-like orphan receptor 1. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor 1 (Ror1), a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=80.91 E-value=0.77 Score=36.53 Aligned_cols=67 Identities=22% Similarity=0.258 Sum_probs=43.6
Q ss_pred CCCceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhh------hccCCcccccccceeeecccccccc
Q psy3004 34 GGRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPL------VEIKCSSDLKFFLCSMYTPICIEDY 102 (169)
Q Consensus 34 ~~~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~L------v~~~Cs~~l~~FLCSly~P~C~~~~ 102 (169)
.+-|++-+-..|+..-=|.+.|=|.. .+|.+++.++.....+ +...|.++...+||...||.|...+
T Consensus 2 ~GyC~~YrG~vC~~~L~~~~Vf~~~~--~~~~~~E~~l~aa~~~i~~s~~vs~~Cr~~A~~~LC~~~FP~C~~~~ 74 (142)
T cd07467 2 DGFCQPYRGIACARFIGNRTIYMESL--HMQGEIENQITAAFTMIGTSSHLSDKCSQFAIPSLCHYAFPYCDETS 74 (142)
T ss_pred CCccccccchHHHHHhCCCeEEEeCC--CCHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhCCCCcccC
Confidence 35677777888887544433333422 2555565555543322 3349999999999999999998743
No 34
>cd07469 CRD_TK_ROR_related Cysteine-rich domain of proteins similar to tyrosine kinase-like orphan receptors. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror) proteins, a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands.
Probab=75.67 E-value=1.3 Score=35.43 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=41.8
Q ss_pred CCCceecCcCcccC-CCCCCccCCCCCCCCCHHHHHHhhh--hhhhh---hccCCcccccccceeeecccccccc
Q psy3004 34 GGRCEEITIPMCKG-IGYNLTQMPNEMNHDTQDEAGLEVH--QFWPL---VEIKCSSDLKFFLCSMYTPICIEDY 102 (169)
Q Consensus 34 ~~~CepI~l~~C~~-L~Yn~T~~PN~lgH~sq~Ea~~~l~--~f~~L---v~~~Cs~~l~~FLCSly~P~C~~~~ 102 (169)
.+-|++-+=.+|+. |.=+...|=|. ...++.++++++. .|..+ +...|.++....||...||.|....
T Consensus 2 ~GyC~~Y~G~iC~~yL~~~~~V~~~~-s~~~~~~~~E~l~~~~~~e~~~~ls~~Cr~~A~~~LC~~aFP~C~~~~ 75 (147)
T cd07469 2 AGYCATYRGEVCRAYLSNDALVWFNS-SYADPEGLNEQLTTGLWEELIKTVSELCRPAAEKLLCNYAFPECHPSG 75 (147)
T ss_pred CCccccccchHHHHHhCCCcEEEEec-CCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCC
Confidence 35677777788886 33222221111 1233444444333 36555 3349999999999999999997654
Done!