Query psy3004
Match_columns 169
No_of_seqs 111 out of 514
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 23:03:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3004.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3004hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ijy_A Frizzled homolog 8; WNT 100.0 4.1E-34 1.4E-38 219.9 5.4 102 33-134 6-128 (130)
2 1ijx_A Secreted frizzled-relat 100.0 7.8E-34 2.7E-38 217.6 3.9 100 34-135 2-123 (127)
3 3hkl_A Muscle, skeletal recept 80.7 1 3.4E-05 36.5 2.9 101 35-136 18-157 (197)
4 4fjo_A DNA repair protein REV1 10.5 1.4E+02 0.0049 20.6 2.1 22 55-76 2-23 (97)
5 3ouv_A Serine/threonine protei 7.5 2.4E+02 0.0082 17.5 2.2 22 51-73 6-27 (71)
6 4aor_D Trypsin inhibitor 3; hy 7.5 1.1E+02 0.0039 17.9 0.5 9 83-91 28-36 (37)
7 1apj_A Fibrillin; microfibril, 7.1 1.4E+02 0.0049 19.7 0.9 12 3-14 3-14 (74)
8 1a56_A C-551, ferricytochrome 6.8 2.7E+02 0.0093 17.1 2.2 20 52-72 56-75 (81)
9 2dcv_A Tachystatin-B1; antimic 6.6 1.3E+02 0.0045 18.3 0.5 13 88-100 22-34 (42)
10 1ne5_A Ergtoxin, cnerg1, ERGTX 6.5 1E+02 0.0035 18.7 -0.1 12 5-16 29-40 (42)
No 1
>1ijy_A Frizzled homolog 8; WNT receptor, frizzled protein structure, cysteine-rich, signaling protein; 1.35A {Mus musculus} SCOP: a.141.1.1
Probab=100.00 E-value=4.1e-34 Score=219.91 Aligned_cols=102 Identities=73% Similarity=1.443 Sum_probs=93.2
Q ss_pred CCCCceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccccc---------
Q psy3004 33 PGGRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY--------- 103 (169)
Q Consensus 33 ~~~~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~--------- 103 (169)
..++|+||++++|++|+||+|+|||++||++|+||..++..|.+|++++||+++++||||+|+|+|+++..
T Consensus 6 ~~~~C~pI~~~~C~~l~Yn~T~~PN~l~h~~q~ea~~~l~~f~~L~~~~C~~~l~~FlCs~~~P~C~~~~~~~~~PCRsl 85 (130)
T 1ijy_A 6 KELACQEITVPLCKGIGYEYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYKKPLPPCRSV 85 (130)
T ss_dssp -CCCCEECCCGGGTTSSCCEECSSCTTCCCSHHHHHHHHGGGHHHHHHTSCTTHHHHHHHHHSCBCCSSCCSCCCBCHHH
T ss_pred CCCeeeeCChhHhCCCCCCeeECCCcCCCcCHHHHHHHHHHHHHHhccCcCHHHHHHHHHhhCCcccCCCCcccCccHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999987432
Q ss_pred ------------cccCCCCCCCCCCCCCCCCCCCCCCccCCcc
Q psy3004 104 ------------KKYGFSWPDRMACDRLPELGDPNNLCMEQNE 134 (169)
Q Consensus 104 ------------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~ 134 (169)
..||+.||++|+|++||+.++.+.+||+++.
T Consensus 86 Ce~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~C~~~~~ 128 (130)
T 1ijy_A 86 CERAKAGCAPLMRQYGFAWPDRMRCDRLPEQGNPDTLCMDYER 128 (130)
T ss_dssp HHHHHHHHHHHHHHTTCCCCGGGCGGGSCCSSCTTSCCBCCCC
T ss_pred HHHHhcchHHHHHhcCCCCCCcCCcccCCCCCCCCCcCCCCCC
Confidence 2899999999999999999875459998764
No 2
>1ijx_A Secreted frizzled-related sequence protein 3; WNT receptor, frizzled protein structure, cysteine-rich, SIG protein; 1.90A {Mus musculus} SCOP: a.141.1.1
Probab=99.98 E-value=7.8e-34 Score=217.57 Aligned_cols=100 Identities=43% Similarity=0.920 Sum_probs=91.1
Q ss_pred CCCceecCcCcccCCCCCCccCCCCCCCCCHHHHHHhhhhhhhhhccCCcccccccceeeeccccccccc----------
Q psy3004 34 GGRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTPICIEDYY---------- 103 (169)
Q Consensus 34 ~~~CepI~l~~C~~L~Yn~T~~PN~lgH~sq~Ea~~~l~~f~~Lv~~~Cs~~l~~FLCSly~P~C~~~~~---------- 103 (169)
+++|+||++++|++||||+|+|||++||++|+||+.++++|.+|++++||+++++||||+|+|+|+++..
T Consensus 2 ~~~C~pi~~~~C~~l~Yn~T~~PN~lgh~~q~ea~~~~~~f~~Lv~~~C~~~l~~FlCs~~~P~C~~~~~~~~i~PCRsl 81 (127)
T 1ijx_A 2 SAACEPVRIPLCKSLPWEMTKMPNHLHHSTQANAILAMEQFEGLLGTHCSPDLLFFLCAMYAPICTIDFQHEPIKPCKSV 81 (127)
T ss_dssp -CCCEECCCGGGGGSSCCEECSSCTTCCSSHHHHHHHHHTTHHHHTTTCCTTHHHHHHHHHSCBCBSSCSSSCCCBCHHH
T ss_pred CCccccCChhHhCCCCCCeeECCCcCCCcCHHHHHHHHHHHHHHHccCcCHHHHhhhhhccCCcccCCCCCcccCccHHH
Confidence 5699999999999999999999999999999999999999999999999999999999999999987522
Q ss_pred ------------cccCCCCCCCCCCCCCCCCCCCCCCccCCccc
Q psy3004 104 ------------KKYGFSWPDRMACDRLPELGDPNNLCMEQNED 135 (169)
Q Consensus 104 ------------~~~g~~WP~~L~C~~FP~~~d~~~lCi~~~~~ 135 (169)
..||+.||++|+|++||..++ ++|+++...
T Consensus 82 Ce~vr~~C~~~~~~~g~~WP~~l~C~~fP~~~~--~~C~~p~~~ 123 (127)
T 1ijx_A 82 CERARQGCEPILIKYRHSWPESLACDELPVYDR--GVCISPEAI 123 (127)
T ss_dssp HHHHHHHHHHHHHHTTCCCCGGGCGGGCCCTTT--CEEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCccccCCCCCC--CcccCcccc
Confidence 289999999999999999753 689987654
No 3
>3hkl_A Muscle, skeletal receptor tyrosine protein kinase; MUSK, receptor tyrosine kinase, frizzled CRD, ATP-binding, D bond, glycoprotein; HET: NAG; 2.10A {Rattus norvegicus}
Probab=80.70 E-value=1 Score=36.54 Aligned_cols=101 Identities=18% Similarity=0.293 Sum_probs=64.9
Q ss_pred CCceecCcCcccC-CCCCCccCCCCCCCCCHHHHHHhh--hhhhhhhc--cCCcccccccceeeeccccccccc---c--
Q psy3004 35 GRCEEITIPMCKG-IGYNLTQMPNEMNHDTQDEAGLEV--HQFWPLVE--IKCSSDLKFFLCSMYTPICIEDYY---K-- 104 (169)
Q Consensus 35 ~~CepI~l~~C~~-L~Yn~T~~PN~lgH~sq~Ea~~~l--~~f~~Lv~--~~Cs~~l~~FLCSly~P~C~~~~~---~-- 104 (169)
+.|++-+=..|+. |.=|...|=|. .-.+++++++.+ ..|..|.. -.|.++...+||...||.|..+.. +
T Consensus 18 GyC~~YrG~vC~~yL~g~~~Vf~ns-S~~dp~~~~E~l~~aaw~el~~lS~~Cr~aAe~lLC~yaFP~Cd~~~gP~P~pL 96 (197)
T 3hkl_A 18 GYCAQYRGEVCDAVLVKDSLVFFNT-SYPDPEEAQELLIHTAWNELKAVSPLCRPAAEALLCNHLFQECSPGVLPTPMPI 96 (197)
T ss_dssp EEEECCCCSSSTTTSCTTCCEEEET-TSSSHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHTCBBCSSSSCCBCCB
T ss_pred cccccccchHHHHHhCCCceEEEec-CcCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhCCCCCCCCCCCCcch
Confidence 5699999999998 44444444332 123466666655 34766644 399999999999999999975211 0
Q ss_pred --------ccCC---CC------------------CCCCCCCCCCCCCCCCCCccCCcccc
Q psy3004 105 --------KYGF---SW------------------PDRMACDRLPELGDPNNLCMEQNEDQ 136 (169)
Q Consensus 105 --------~~g~---~W------------------P~~L~C~~FP~~~d~~~lCi~~~~~~ 136 (169)
+..+ .| =..-+|+++|..+.+...|+......
T Consensus 97 CREdC~alk~~~C~~Ew~~~e~~~~~G~~~~~~~~l~LP~Ce~LP~~~~~~~~Ct~ig~~d 157 (197)
T 3hkl_A 97 CREYCLAVKELFCAKEWLAMEGKTHRGLYRSGMHFLPVPECSKLPSMHQDPTACTRLPYLD 157 (197)
T ss_dssp CHHHHHHHHHTTTTTTHHHHHHHHHHHHHHHTCCCCCCCCGGGSCCTTTCTTSSBCCTTTC
T ss_pred hHHHHHHHHHHHhHHHHHHHHhccccccccccccceeCCchhhCCCCCCCCCcceeccccc
Confidence 0000 11 02347999999875566788776443
No 4
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=10.50 E-value=1.4e+02 Score=20.62 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=19.8
Q ss_pred CCCCCCCCCHHHHHHhhhhhhh
Q psy3004 55 MPNEMNHDTQDEAGLEVHQFWP 76 (169)
Q Consensus 55 ~PN~lgH~sq~Ea~~~l~~f~~ 76 (169)
.||+.|-++..|+...+..|..
T Consensus 2 ~P~~~g~t~l~dvr~~l~~Wv~ 23 (97)
T 4fjo_A 2 APNLAGAVEFSDVKTLLKEWIT 23 (97)
T ss_dssp CCCBTTBCSHHHHHHHHHHHHH
T ss_pred CCcccCCcCHHHHHHHHHHHHH
Confidence 5999999999999999998875
No 5
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=7.53 E-value=2.4e+02 Score=17.52 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=15.9
Q ss_pred CCccCCCCCCCCCHHHHHHhhhh
Q psy3004 51 NLTQMPNEMNHDTQDEAGLEVHQ 73 (169)
Q Consensus 51 n~T~~PN~lgH~sq~Ea~~~l~~ 73 (169)
....+||+.|. +.++|...|..
T Consensus 6 ~~v~VPdv~G~-~~~~A~~~L~~ 27 (71)
T 3ouv_A 6 ATKDIPDVAGQ-TVDVAQKNMNV 27 (71)
T ss_dssp CEEECCCCTTC-BHHHHHHHHHH
T ss_pred CceECCCcCCC-CHHHHHHHHHH
Confidence 35678998874 57788776655
No 6
>4aor_D Trypsin inhibitor 3; hydrolase-inhibitor complex, miniprotein scaffold, knottins, protease inhibitor; HET: GOL MES; 1.70A {Spinacia oleracea} PDB: 4aoq_D*
Probab=7.52 E-value=1.1e+02 Score=17.91 Aligned_cols=9 Identities=33% Similarity=0.903 Sum_probs=5.5
Q ss_pred cccccccce
Q psy3004 83 SSDLKFFLC 91 (169)
Q Consensus 83 s~~l~~FLC 91 (169)
||.|+.|+|
T Consensus 28 hp~lrifvc 36 (37)
T 4aor_D 28 HPILRIFVC 36 (37)
T ss_dssp CSSBSSEEE
T ss_pred CCeeEEEee
Confidence 455666666
No 7
>1apj_A Fibrillin; microfibril, TB module, marfan syndrome, connective tissue, novel fold, extracellular matrix; NMR {Homo sapiens} SCOP: g.23.1.1
Probab=7.13 E-value=1.4e+02 Score=19.71 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=8.5
Q ss_pred ceeeecceeeee
Q psy3004 3 RDVRVRDCALLK 14 (169)
Q Consensus 3 ~~~~~~~~~~~~ 14 (169)
-|.|++-||...
T Consensus 3 ~D~R~~~Cy~~~ 14 (74)
T 1apj_A 3 QDLRMSYCYAKF 14 (74)
T ss_dssp GGGCEEEEEEEE
T ss_pred eeccccCccccc
Confidence 377777777765
No 8
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=6.83 E-value=2.7e+02 Score=17.05 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=13.0
Q ss_pred CccCCCCCCCCCHHHHHHhhh
Q psy3004 52 LTQMPNEMNHDTQDEAGLEVH 72 (169)
Q Consensus 52 ~T~~PN~lgH~sq~Ea~~~l~ 72 (169)
.+.||.+ ++-|.+|+..-+.
T Consensus 56 ~~~Mp~~-~~Ls~~ei~~l~~ 75 (81)
T 1a56_A 56 QIPMPPN-VNVSDADAKALAD 75 (81)
T ss_dssp SCCBCSC-CSSSSHHHHHHHH
T ss_pred CCCCCCC-CCCCHHHHHHHHH
Confidence 3678887 6677777654433
No 9
>2dcv_A Tachystatin-B1; antimicrobial, cystine-knot, antimicrobial protein; NMR {Tachypleus tridentatus} PDB: 2dcw_A
Probab=6.64 E-value=1.3e+02 Score=18.35 Aligned_cols=13 Identities=23% Similarity=0.202 Sum_probs=10.8
Q ss_pred ccceeeecccccc
Q psy3004 88 FFLCSMYTPICIE 100 (169)
Q Consensus 88 ~FLCSly~P~C~~ 100 (169)
-|.||-++|.|+-
T Consensus 22 GyyCsr~fP~ci~ 34 (42)
T 2dcv_A 22 GYYCRRDFPGSIF 34 (42)
T ss_dssp TEEEEESSTTCSE
T ss_pred CcEEcCCCCCcee
Confidence 4889999999964
No 10
>1ne5_A Ergtoxin, cnerg1, ERGTX; alpha-helix, triple-stranded beta-sheet; NMR {Synthetic} SCOP: g.3.7.2 PDB: 1px9_A
Probab=6.52 E-value=1e+02 Score=18.67 Aligned_cols=12 Identities=25% Similarity=0.686 Sum_probs=9.8
Q ss_pred eeecceeeeecc
Q psy3004 5 VRVRDCALLKCE 16 (169)
Q Consensus 5 ~~~~~~~~~~~~ 16 (169)
-|.|.|-|.|||
T Consensus 29 h~~gtc~~fkck 40 (42)
T 1ne5_A 29 HNGGTCMFFKCK 40 (42)
T ss_dssp SSCEEEESSCEE
T ss_pred CCCceEEEEEee
Confidence 367889999997
Done!