RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3004
(169 letters)
>1ijy_A Frizzled homolog 8; WNT receptor, frizzled protein structure,
cysteine-rich, signaling protein; 1.35A {Mus musculus}
SCOP: a.141.1.1
Length = 130
Score = 114 bits (287), Expect = 1e-33
Identities = 74/123 (60%), Positives = 86/123 (69%), Gaps = 21/123 (17%)
Query: 35 GRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMY 94
C+EIT+P+CKGIGY T MPN+ NHDTQDEAGLEVHQFWPLVEI+CS DLKFFLCSMY
Sbjct: 8 LACQEITVPLCKGIGYEYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMY 67
Query: 95 TPICIEDY---------------------YKKYGFSWPDRMACDRLPELGDPNNLCMEQN 133
TPIC+EDY ++YGF+WPDRM CDRLPE G+P+ LCM+
Sbjct: 68 TPICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFAWPDRMRCDRLPEQGNPDTLCMDYE 127
Query: 134 EDQ 136
Sbjct: 128 RTD 130
>1ijx_A Secreted frizzled-related sequence protein 3; WNT receptor,
frizzled protein structure, cysteine-rich, SIG protein;
1.90A {Mus musculus} SCOP: a.141.1.1
Length = 127
Score = 98.3 bits (244), Expect = 3e-27
Identities = 43/123 (34%), Positives = 59/123 (47%), Gaps = 24/123 (19%)
Query: 35 GRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMY 94
CE + IP+CK + + +T+MPN ++H TQ A L + QF L+ CS DL FFLC+MY
Sbjct: 3 AACEPVRIPLCKSLPWEMTKMPNHLHHSTQANAILAMEQFEGLLGTHCSPDLLFFLCAMY 62
Query: 95 TPICIEDY----------------------YKKYGFSWPDRMACDRLPELGDPNNLCMEQ 132
PIC D+ KY SWP+ +ACD LP +C+
Sbjct: 63 APICTIDFQHEPIKPCKSVCERARQGCEPILIKYRHSWPESLACDELPVYD--RGVCISP 120
Query: 133 NED 135
Sbjct: 121 EAI 123
>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway,
isoprene biosynthesis, metal- NADP, oxidoreductase; HET:
NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*
Length = 376
Score = 28.2 bits (64), Expect = 1.3
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 7/27 (25%)
Query: 93 MYTPICIEDYYKKYGFSWPDRMACDRL 119
M PI Y +P R+A +
Sbjct: 254 MRIPI-------SYALFYPRRVALEPF 273
>2zw3_A GAP junction beta-2 protein; ION channel, alpha helical membrane
channel, two double layered lipid spanning, cellular
adhesion, cell junction; 3.50A {Homo sapiens} PDB:
3iz1_A 3iz2_A
Length = 226
Score = 27.7 bits (61), Expect = 1.6
Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 9/111 (8%)
Query: 19 ICFESQTPNSSILFPGGRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLV 78
+C++ P S I + ++ P + + + + E E +
Sbjct: 63 VCYDHYFPISHIRLWALQLIFVSTPALLVAMHVAYRRHEKKRKFIKGEIKSEFKDIEEIK 122
Query: 79 EIKCSSD---LKFFLCSMYTPICIE------DYYKKYGFSWPDRMACDRLP 120
K + + S++ + E Y GFS + C+ P
Sbjct: 123 TQKVRIEGSLWWTYTSSIFFRVIFEAAFMYVFYVMYDGFSMQRLVKCNAWP 173
>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase,
DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis}
PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A
2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A
2jd0_A* 2c82_A
Length = 398
Score = 27.5 bits (62), Expect = 2.6
Identities = 6/25 (24%), Positives = 8/25 (32%), Gaps = 7/25 (28%)
Query: 93 MYTPICIEDYYKKYGFSWPDRMACD 117
M PI WP R++
Sbjct: 276 MKLPI-------SLALGWPRRVSGA 293
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon
orthoreovirus}
Length = 26
Score = 24.7 bits (53), Expect = 3.1
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 139 HTTLRPPAPPP 149
H+ ++PPAPPP
Sbjct: 5 HSIVQPPAPPP 15
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 3.2
Identities = 5/22 (22%), Positives = 9/22 (40%), Gaps = 2/22 (9%)
Query: 131 EQNEDQAAHTTLRPPAP--PPA 150
E+ + +L+ A PA
Sbjct: 18 EKQALKKLQASLKLYADDSAPA 39
>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase;
HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1
c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A
1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A*
3anm_A* 3anl_A* 3ann_A* 3iie_A
Length = 406
Score = 26.7 bits (60), Expect = 4.3
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 7/25 (28%)
Query: 93 MYTPICIEDYYKKYGFSWPDRMACD 117
M TPI + +WP+R+
Sbjct: 284 MRTPI-------AHTMAWPNRVNSG 301
>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding;
HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A*
3aua_A*
Length = 488
Score = 26.9 bits (60), Expect = 4.4
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 7/25 (28%)
Query: 93 MYTPICIEDYYKKYGFSWPDRMACD 117
M PI Y +WPDR+ +
Sbjct: 360 MQIPI-------LYSLTWPDRIKTN 377
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural
genomics, protein structure initiative, PSI; NMR {Homo
sapiens}
Length = 125
Score = 25.4 bits (55), Expect = 6.8
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 139 HTTLRPPAPPPAGGGKKSGNNAVTKCR 165
H R P P G+++
Sbjct: 95 HLVARETLPEPNSQGQRNREKTGESNC 121
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent,
fosmidomycin, non- mevalonate pathway, oxidoreductase;
1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3
d.81.1.3 PDB: 1r0l_A*
Length = 388
Score = 25.9 bits (58), Expect = 7.0
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 7/25 (28%)
Query: 93 MYTPICIEDYYKKYGFSWPDRMACD 117
M TPI + +WP RM
Sbjct: 266 MRTPI-------GHTLAWPKRMETP 283
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol,
DI-MYO-inositol phosphate; 1.89A {Archaeoglobus
fulgidus} PDB: 2xmh_A*
Length = 232
Score = 25.6 bits (57), Expect = 9.2
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 87 KFFLCSMYTPICIEDYYKKYGFSWP 111
+F + + I+ + K GF++
Sbjct: 61 EFIIVASRYADDIDAFLKDKGFNYK 85
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.455
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,638,028
Number of extensions: 144761
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 15
Length of query: 169
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 82
Effective length of database: 4,272,666
Effective search space: 350358612
Effective search space used: 350358612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)