RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3004
         (169 letters)



>d1ijya_ a.141.1.1 (A:) Frizzled 8 (FZ8) {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 122

 Score =  104 bits (261), Expect = 2e-30
 Identities = 74/120 (61%), Positives = 86/120 (71%), Gaps = 21/120 (17%)

Query: 35  GRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMY 94
             C+EIT+P+CKGIGY  T MPN+ NHDTQDEAGLEVHQFWPLVEI+CS DLKFFLCSMY
Sbjct: 2   LACQEITVPLCKGIGYEYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMY 61

Query: 95  TPICIEDY---------------------YKKYGFSWPDRMACDRLPELGDPNNLCMEQN 133
           TPIC+EDY                      ++YGF+WPDRM CDRLPE G+P+ LCM+  
Sbjct: 62  TPICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFAWPDRMRCDRLPEQGNPDTLCMDYE 121


>d1ijxa_ a.141.1.1 (A:) Secreted Frizzled-related protein 3
           (SFRP-3;fzb) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 125

 Score = 96.7 bits (240), Expect = 4e-27
 Identities = 43/123 (34%), Positives = 59/123 (47%), Gaps = 24/123 (19%)

Query: 35  GRCEEITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMY 94
             CE + IP+CK + + +T+MPN ++H TQ  A L + QF  L+   CS DL FFLC+MY
Sbjct: 1   AACEPVRIPLCKSLPWEMTKMPNHLHHSTQANAILAMEQFEGLLGTHCSPDLLFFLCAMY 60

Query: 95  TPICIEDY----------------------YKKYGFSWPDRMACDRLPELGDPNNLCMEQ 132
            PIC  D+                        KY  SWP+ +ACD LP       +C+  
Sbjct: 61  APICTIDFQHEPIKPCKSVCERARQGCEPILIKYRHSWPESLACDELPV--YDRGVCISP 118

Query: 133 NED 135
              
Sbjct: 119 EAI 121


>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 44

 Score = 24.2 bits (53), Expect = 1.9
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 6/33 (18%)

Query: 112 DRMACDRLPELGDPNNLCME------QNEDQAA 138
           ++ A +RL  LG P +L ++      +NE+ AA
Sbjct: 4   EKEAIERLKALGFPESLVIQAYFACEKNENLAA 36


>d1svba1 b.1.18.4 (A:303-395) Envelope glycoprotein {Tick-borne
          encephalitis virus [TaxId: 11084]}
          Length = 93

 Score = 24.7 bits (54), Expect = 3.2
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 41 TIPMCKGIGYNLTQMPNEMNHDT 63
          T  MC    +   + P +  HDT
Sbjct: 1  TYTMCDKTKFTWKRAPTDSGHDT 23


>d1t1ra3 c.2.1.3 (A:275-300) 1-deoxy-D-xylulose-5-phosphate
           reductoisomerase {Escherichia coli [TaxId: 562]}
          Length = 26

 Score = 22.6 bits (49), Expect = 4.6
 Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 7/23 (30%)

Query: 93  MYTPICIEDYYKKYGFSWPDRMA 115
           M TPI        +  +WP+R+ 
Sbjct: 1   MRTPI-------AHTMAWPNRVN 16


>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
           {Thermus thermophilus [TaxId: 274]}
          Length = 494

 Score = 24.6 bits (52), Expect = 8.3
 Identities = 13/65 (20%), Positives = 19/65 (29%)

Query: 89  FLCSMYTPICIEDYYKKYGFSWPDRMACDRLPELGDPNNLCMEQNEDQAAHTTLRPPAPP 148
                 TPI +           P+      LP+L D  ++  +      AH        P
Sbjct: 234 RQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCP 293

Query: 149 PAGGG 153
             GG 
Sbjct: 294 KCGGP 298


>d1epwa2 b.42.4.2 (A:1080-1290) Botulinum neurotoxin {Clostridium
           botulinum, serotype B [TaxId: 1491]}
          Length = 211

 Score = 24.1 bits (52), Expect = 8.8
 Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 1/72 (1%)

Query: 40  ITIPMCKGIGYNLTQMPNEMNHDTQDEAGLEVHQFWPLVEIKCSSDLKFFLCSMYTP-IC 98
                 +   Y+   +  +    T +   + +H+F+    +       F +   Y   + 
Sbjct: 129 QIKEYDEQPTYSCQLLFKKDEESTDEIGLIGIHRFYESGIVFEEYKDYFCISKWYLKEVK 188

Query: 99  IEDYYKKYGFSW 110
            + Y  K G +W
Sbjct: 189 RKPYNLKLGCNW 200


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.455 

Gapped
Lambda     K      H
   0.267   0.0667    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 674,457
Number of extensions: 31337
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 8
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)