Query psy3005
Match_columns 79
No_of_seqs 154 out of 1044
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 23:04:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2723 BglB Beta-glucosidase/ 99.9 9.5E-26 2.1E-30 162.5 3.0 73 5-79 147-220 (460)
2 KOG0626|consensus 99.9 9.1E-25 2E-29 158.9 3.0 74 5-79 180-264 (524)
3 PRK13511 6-phospho-beta-galact 99.9 1.5E-24 3.2E-29 157.2 3.0 72 5-79 140-213 (469)
4 TIGR01233 lacG 6-phospho-beta- 99.9 2.3E-24 5E-29 156.2 2.8 72 5-79 139-212 (467)
5 PF00232 Glyco_hydro_1: Glycos 99.9 1.6E-24 3.5E-29 156.2 0.9 73 5-79 145-218 (455)
6 PLN02998 beta-glucosidase 99.9 4.2E-24 9E-29 155.8 2.8 74 5-79 169-257 (497)
7 PRK09593 arb 6-phospho-beta-gl 99.9 1.2E-23 2.6E-28 152.8 3.1 73 5-79 161-236 (478)
8 PRK09852 cryptic 6-phospho-bet 99.9 1.2E-23 2.7E-28 152.6 3.2 73 5-79 159-234 (474)
9 PLN02849 beta-glucosidase 99.9 9.7E-24 2.1E-28 154.1 2.5 74 5-79 166-253 (503)
10 PRK09589 celA 6-phospho-beta-g 99.9 1.4E-23 3.1E-28 152.3 3.2 73 5-79 155-235 (476)
11 PLN02814 beta-glucosidase 99.9 5.7E-23 1.2E-27 150.1 2.8 73 5-79 164-251 (504)
12 PRK15014 6-phospho-beta-glucos 99.9 6.5E-23 1.4E-27 149.0 2.5 73 5-79 157-237 (477)
13 TIGR03356 BGL beta-galactosida 99.9 7.6E-23 1.7E-27 146.8 2.6 73 5-79 140-213 (427)
14 smart00633 Glyco_10 Glycosyl h 94.7 0.0093 2E-07 40.3 0.1 25 5-29 61-85 (254)
15 PF11790 Glyco_hydro_cc: Glyco 84.2 0.41 9E-06 32.2 0.6 15 15-29 63-77 (239)
16 PF13653 GDPD_2: Glycerophosph 84.1 0.5 1.1E-05 22.2 0.7 14 17-31 1-14 (30)
17 PF12876 Cellulase-like: Sugar 79.1 0.87 1.9E-05 25.9 0.6 14 15-28 8-22 (88)
18 PF01229 Glyco_hydro_39: Glyco 75.3 0.84 1.8E-05 33.7 -0.2 57 6-79 141-200 (486)
19 PF00331 Glyco_hydro_10: Glyco 52.3 5 0.00011 28.2 0.1 23 6-28 111-135 (320)
20 COG3693 XynA Beta-1,4-xylanase 50.8 6 0.00013 28.5 0.3 23 6-28 130-152 (345)
21 PF12891 Glyco_hydro_44: Glyco 47.6 19 0.00041 24.8 2.3 25 7-31 110-139 (239)
22 PF08952 DUF1866: Domain of un 46.6 12 0.00025 24.0 1.1 23 8-31 62-84 (146)
23 PF14587 Glyco_hydr_30_2: O-Gl 46.2 8.4 0.00018 28.2 0.5 18 12-29 168-185 (384)
24 PF00942 CBM_3: Cellulose bind 40.8 19 0.00041 20.3 1.4 10 17-26 35-44 (86)
25 PLN02796 D-glycerate 3-kinase 39.0 14 0.0003 26.7 0.7 38 3-40 192-233 (347)
26 TIGR01638 Atha_cystat_rel Arab 35.4 32 0.00069 20.3 1.7 13 12-24 44-56 (92)
27 COG5601 CDC36 General negative 27.5 23 0.0005 22.8 0.3 20 12-31 119-141 (172)
28 PF00150 Cellulase: Cellulase 25.7 14 0.00031 24.2 -1.0 24 7-30 109-134 (281)
29 PF11405 Inhibitor_I67: Bromel 23.9 29 0.00062 16.9 0.1 15 4-18 15-29 (41)
30 COG1509 KamA Lysine 2,3-aminom 22.5 33 0.00072 25.1 0.3 12 3-14 121-132 (369)
31 PF02407 Viral_Rep: Putative v 22.1 43 0.00092 19.2 0.7 11 19-29 2-13 (86)
32 PLN03046 D-glycerate 3-kinase; 21.9 34 0.00073 25.8 0.2 38 3-40 304-345 (460)
No 1
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=9.5e-26 Score=162.48 Aligned_cols=73 Identities=30% Similarity=0.381 Sum_probs=68.1
Q ss_pred eeecccceeCCCceeEEEEechhhhhh-cCCccccccceeeeeccchhhHHHhHHHHHHHHHHHHHHhhcCCCCCC
Q psy3005 5 VRCAHQVSCRPDQVKLWITINEPLEAM-QGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYKPSQKG 79 (79)
Q Consensus 5 ~ya~~v~~~fgd~V~~W~TfNEpn~~~-~~y~~g~~~p~~~~~~~~~~~~~~h~~~~Aha~a~~~~k~~~~~~~~g 79 (79)
.||++||++|||+||||+||||||+++ .+|+.+.+||+..+.+. .+|+.||+++|||+|++++|++.|+.|||
T Consensus 147 ~ya~~vf~~f~dkVk~W~TFNE~n~~~~~~y~~~~~~p~~~~~~~--~~qa~hh~~lA~A~avk~~~~~~~~~kIG 220 (460)
T COG2723 147 RYAATVFERFGDKVKYWFTFNEPNVVVELGYLYGGHPPGIVDPKA--AYQVAHHMLLAHALAVKAIKKINPKGKVG 220 (460)
T ss_pred HHHHHHHHHhcCcceEEEEecchhhhhcccccccccCCCccCHHH--HHHHHHHHHHHHHHHHHHHHhhCCcCceE
Confidence 599999999999999999999999999 99999999988777666 89999999999999999999999886776
No 2
>KOG0626|consensus
Probab=99.90 E-value=9.1e-25 Score=158.90 Aligned_cols=74 Identities=43% Similarity=0.551 Sum_probs=64.4
Q ss_pred eeecccceeCCCceeEEEEechhhhhh-cCCccccccceeee----------eccchhhHHHhHHHHHHHHHHHHHHhhc
Q psy3005 5 VRCAHQVSCRPDQVKLWITINEPLEAM-QGYDFKTYAPYLSM----------TGVGGEYLAAHNMLRSHAKAYRLYEKKY 73 (79)
Q Consensus 5 ~ya~~v~~~fgd~V~~W~TfNEpn~~~-~~y~~g~~~p~~~~----------~~~~~~~~~~h~~~~Aha~a~~~~k~~~ 73 (79)
-||++||++|||+||.|+||||||+++ .||..|..|||+.+ ...+ .|.+.|||++|||+|++++|+.+
T Consensus 180 ~yA~~CF~~fGDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~e-pYiv~HNllLAHA~Av~~yr~ky 258 (524)
T KOG0626|consen 180 DYADLCFQEFGDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTE-PYIVAHNLLLAHAAAVDLYRKKY 258 (524)
T ss_pred HHHHHHHHHhcccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCC-cchHHHHHHHHHHHHHHHHHHhh
Confidence 489999999999999999999999999 99999999988732 2344 78999999999999999999987
Q ss_pred CCCCCC
Q psy3005 74 KPSQKG 79 (79)
Q Consensus 74 ~~~~~g 79 (79)
+..|.|
T Consensus 259 k~~Q~G 264 (524)
T KOG0626|consen 259 KKKQGG 264 (524)
T ss_pred hhhcCC
Confidence 655544
No 3
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=99.90 E-value=1.5e-24 Score=157.16 Aligned_cols=72 Identities=25% Similarity=0.354 Sum_probs=65.3
Q ss_pred eeecccceeCCCceeEEEEechhhhhh-cCCccccccceeeee-ccchhhHHHhHHHHHHHHHHHHHHhhcCCCCCC
Q psy3005 5 VRCAHQVSCRPDQVKLWITINEPLEAM-QGYDFKTYAPYLSMT-GVGGEYLAAHNMLRSHAKAYRLYEKKYKPSQKG 79 (79)
Q Consensus 5 ~ya~~v~~~fgd~V~~W~TfNEpn~~~-~~y~~g~~~p~~~~~-~~~~~~~~~h~~~~Aha~a~~~~k~~~~~~~~g 79 (79)
.||++||++||| ||+|+||||||+++ .||..|.+||+.... .. .++++||+++|||+|++++|+..+++|||
T Consensus 140 ~YA~~~~~~fgd-Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~~~~~--~~~~~hn~llAHa~A~~~~~~~~~~g~IG 213 (469)
T PRK13511 140 RYAEFCFEEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPGIKYDLAK--VFQSHHNMMVAHARAVKLFKDKGYKGEIG 213 (469)
T ss_pred HHHHHHHHHhCC-CCEEEEccchhhhhhcchhhcccCCCCCccHHH--HHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 599999999999 99999999999999 999999999986432 24 79999999999999999999998888887
No 4
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=99.89 E-value=2.3e-24 Score=156.16 Aligned_cols=72 Identities=28% Similarity=0.361 Sum_probs=65.0
Q ss_pred eeecccceeCCCceeEEEEechhhhhh-cCCccccccceeee-eccchhhHHHhHHHHHHHHHHHHHHhhcCCCCCC
Q psy3005 5 VRCAHQVSCRPDQVKLWITINEPLEAM-QGYDFKTYAPYLSM-TGVGGEYLAAHNMLRSHAKAYRLYEKKYKPSQKG 79 (79)
Q Consensus 5 ~ya~~v~~~fgd~V~~W~TfNEpn~~~-~~y~~g~~~p~~~~-~~~~~~~~~~h~~~~Aha~a~~~~k~~~~~~~~g 79 (79)
.||++||++||| ||+|+||||||+++ .||..|.+||+... ... .+++.||+++|||+|++++|+..++++||
T Consensus 139 ~YA~~~f~~fgd-Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~--~~~a~hn~l~AHa~A~~~~~~~~~~~~IG 212 (467)
T TIGR01233 139 DYAAFCFEEFPE-VNYWTTFNEIGPIGDGQYLVGKFPPGIKYDLAK--VFQSHHNMMVSHARAVKLYKDKGYKGEIG 212 (467)
T ss_pred HHHHHHHHHhCC-CCEEEEecchhhhhhccchhcccCCCccchhHH--HHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 599999999998 99999999999999 99999999998533 224 79999999999999999999999998887
No 5
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=99.89 E-value=1.6e-24 Score=156.16 Aligned_cols=73 Identities=34% Similarity=0.458 Sum_probs=68.4
Q ss_pred eeecccceeCCCceeEEEEechhhhhh-cCCccccccceeeeeccchhhHHHhHHHHHHHHHHHHHHhhcCCCCCC
Q psy3005 5 VRCAHQVSCRPDQVKLWITINEPLEAM-QGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYKPSQKG 79 (79)
Q Consensus 5 ~ya~~v~~~fgd~V~~W~TfNEpn~~~-~~y~~g~~~p~~~~~~~~~~~~~~h~~~~Aha~a~~~~k~~~~~~~~g 79 (79)
.||++||++|||+|++|+||||||+++ .+|..|.+||+..+... .+++.||+++||++|++++|+..+++|+|
T Consensus 145 ~Ya~~~~~~~gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~--~~~~~h~~l~AHa~A~~~~~~~~~~~~IG 218 (455)
T PF00232_consen 145 RYAEFVFERFGDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKA--FYQAAHNLLLAHAKAVKAIKEKYPDGKIG 218 (455)
T ss_dssp HHHHHHHHHHTTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHH--HHHHHHHHHHHHHHHHHHHHHHTCTSEEE
T ss_pred HHHHHHHHHhCCCcceEEeccccceeeccccccccccccccccch--hhHHHhhHHHHHHHHHHHHhhcccceEEe
Confidence 499999999999999999999999999 99999999999766666 89999999999999999999999999887
No 6
>PLN02998 beta-glucosidase
Probab=99.89 E-value=4.2e-24 Score=155.82 Aligned_cols=74 Identities=31% Similarity=0.392 Sum_probs=63.5
Q ss_pred eeecccceeCCCceeEEEEechhhhhh-cCCccccccceeeee-----------ccchhhHHHhHHHHHHHHHHHHHHhh
Q psy3005 5 VRCAHQVSCRPDQVKLWITINEPLEAM-QGYDFKTYAPYLSMT-----------GVGGEYLAAHNMLRSHAKAYRLYEKK 72 (79)
Q Consensus 5 ~ya~~v~~~fgd~V~~W~TfNEpn~~~-~~y~~g~~~p~~~~~-----------~~~~~~~~~h~~~~Aha~a~~~~k~~ 72 (79)
.||++||++|||+||+|+||||||+++ .||..|.+||+.... ... .+++.||+++|||+|++++|+.
T Consensus 169 ~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~-~~~~~hn~llAHa~A~~~~~~~ 247 (497)
T PLN02998 169 AYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIE-PYIAVHNMLLAHASATILYKQQ 247 (497)
T ss_pred HHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 599999999999999999999999998 899999989885321 111 5899999999999999999997
Q ss_pred ---cCCCCCC
Q psy3005 73 ---YKPSQKG 79 (79)
Q Consensus 73 ---~~~~~~g 79 (79)
.++++||
T Consensus 248 ~~~~~~g~IG 257 (497)
T PLN02998 248 YKYKQHGSVG 257 (497)
T ss_pred hccCCCCcEE
Confidence 5677776
No 7
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=99.88 E-value=1.2e-23 Score=152.81 Aligned_cols=73 Identities=22% Similarity=0.240 Sum_probs=62.6
Q ss_pred eeecccceeCCCceeEEEEechhhhhh-cCCc-ccc-ccceeeeeccchhhHHHhHHHHHHHHHHHHHHhhcCCCCCC
Q psy3005 5 VRCAHQVSCRPDQVKLWITINEPLEAM-QGYD-FKT-YAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYKPSQKG 79 (79)
Q Consensus 5 ~ya~~v~~~fgd~V~~W~TfNEpn~~~-~~y~-~g~-~~p~~~~~~~~~~~~~~h~~~~Aha~a~~~~k~~~~~~~~g 79 (79)
.||++||++|||+||+|+||||||+++ .+|. .|. +||+...... .+++.||+++|||+|++++|+..+++|||
T Consensus 161 ~YA~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~~~~--~~~a~h~~llAHa~A~~~~~~~~~~g~VG 236 (478)
T PRK09593 161 RLCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENKEQV--KYQAAHHELVASAIATKIAHEVDPENKVG 236 (478)
T ss_pred HHHHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCchhhh--HHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 599999999999999999999999988 7876 454 3666433334 79999999999999999999999998887
No 8
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=99.88 E-value=1.2e-23 Score=152.64 Aligned_cols=73 Identities=22% Similarity=0.218 Sum_probs=63.2
Q ss_pred eeecccceeCCCceeEEEEechhhhhh-cCCc-ccc-ccceeeeeccchhhHHHhHHHHHHHHHHHHHHhhcCCCCCC
Q psy3005 5 VRCAHQVSCRPDQVKLWITINEPLEAM-QGYD-FKT-YAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYKPSQKG 79 (79)
Q Consensus 5 ~ya~~v~~~fgd~V~~W~TfNEpn~~~-~~y~-~g~-~~p~~~~~~~~~~~~~~h~~~~Aha~a~~~~k~~~~~~~~g 79 (79)
.||++||++|||+||+|+||||||+++ .+|. .|. +||+...... .+++.||+++|||+|++++|+..+++|||
T Consensus 159 ~ya~~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~~~~--~~~~~hn~llAHa~A~~~~~~~~~~~~IG 234 (474)
T PRK09852 159 RYARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQV--KYQAAHHELVASALATKIAHEVNPQNQVG 234 (474)
T ss_pred HHHHHHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCchHh--HHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 589999999999999999999999988 8886 554 4776433333 79999999999999999999999998887
No 9
>PLN02849 beta-glucosidase
Probab=99.88 E-value=9.7e-24 Score=154.08 Aligned_cols=74 Identities=30% Similarity=0.427 Sum_probs=63.6
Q ss_pred eeecccceeCCCceeEEEEechhhhhh-cCCccccccceeeee----------ccchhhHHHhHHHHHHHHHHHHHHhhc
Q psy3005 5 VRCAHQVSCRPDQVKLWITINEPLEAM-QGYDFKTYAPYLSMT----------GVGGEYLAAHNMLRSHAKAYRLYEKKY 73 (79)
Q Consensus 5 ~ya~~v~~~fgd~V~~W~TfNEpn~~~-~~y~~g~~~p~~~~~----------~~~~~~~~~h~~~~Aha~a~~~~k~~~ 73 (79)
.||++||++|||+||+|+||||||+++ .||..|.+||+.... ..+ .+++.||+++||++|++++|++.
T Consensus 166 ~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~-~~~a~hn~llAHa~A~~~~~~~~ 244 (503)
T PLN02849 166 AYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTE-PYIVGHNLLLAHASVSRLYKQKY 244 (503)
T ss_pred HHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 499999999999999999999999998 899989889885321 112 68999999999999999999973
Q ss_pred ---CCCCCC
Q psy3005 74 ---KPSQKG 79 (79)
Q Consensus 74 ---~~~~~g 79 (79)
+++|||
T Consensus 245 ~~~~~~~IG 253 (503)
T PLN02849 245 KDMQGGSIG 253 (503)
T ss_pred cCCCCCEEE
Confidence 677776
No 10
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=99.88 E-value=1.4e-23 Score=152.33 Aligned_cols=73 Identities=25% Similarity=0.208 Sum_probs=60.9
Q ss_pred eeecccceeCCCceeEEEEechhhhhh-c-----CCc-ccc-ccceeeeeccchhhHHHhHHHHHHHHHHHHHHhhcCCC
Q psy3005 5 VRCAHQVSCRPDQVKLWITINEPLEAM-Q-----GYD-FKT-YAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYKPS 76 (79)
Q Consensus 5 ~ya~~v~~~fgd~V~~W~TfNEpn~~~-~-----~y~-~g~-~~p~~~~~~~~~~~~~~h~~~~Aha~a~~~~k~~~~~~ 76 (79)
.||++||++|||+||+|+||||||+++ . +|. .|. +||+...... .+++.||+++|||+|++++|+..|++
T Consensus 155 ~YA~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~~~~--~~~~~h~~llAha~A~~~~~~~~~~~ 232 (476)
T PRK09589 155 RFAEVVFTRYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDREQI--MYQAAHYELVASALAVKTGHEINPDF 232 (476)
T ss_pred HHHHHHHHHhcCCCCEEEEecchhhhhccccccCCccccccccCCCCchhHH--HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 599999999999999999999999887 5 454 344 3665432233 69999999999999999999999998
Q ss_pred CCC
Q psy3005 77 QKG 79 (79)
Q Consensus 77 ~~g 79 (79)
|+|
T Consensus 233 ~iG 235 (476)
T PRK09589 233 QIG 235 (476)
T ss_pred cEE
Confidence 887
No 11
>PLN02814 beta-glucosidase
Probab=99.86 E-value=5.7e-23 Score=150.09 Aligned_cols=73 Identities=30% Similarity=0.300 Sum_probs=61.0
Q ss_pred eeecccceeCCCceeEEEEechhhhhh-cCCccccccceeeee-----------ccchhhHHHhHHHHHHHHHHHHHHhh
Q psy3005 5 VRCAHQVSCRPDQVKLWITINEPLEAM-QGYDFKTYAPYLSMT-----------GVGGEYLAAHNMLRSHAKAYRLYEKK 72 (79)
Q Consensus 5 ~ya~~v~~~fgd~V~~W~TfNEpn~~~-~~y~~g~~~p~~~~~-----------~~~~~~~~~h~~~~Aha~a~~~~k~~ 72 (79)
.||++||++|||+||+|+||||||+++ .+|..|.. |+..+. ..+ .+++.||+++|||+|++++|+.
T Consensus 164 ~YA~~~f~~fgdrVk~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~-~~~a~hn~llAHa~Av~~~~~~ 241 (504)
T PLN02814 164 AFADVCFREFGEDVKLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTE-TYIAGHNMLLAHASASNLYKLK 241 (504)
T ss_pred HHHHHHHHHhCCcCCEEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999988 88987775 543221 112 6899999999999999999986
Q ss_pred ---cCCCCCC
Q psy3005 73 ---YKPSQKG 79 (79)
Q Consensus 73 ---~~~~~~g 79 (79)
.+++|||
T Consensus 242 ~~~~~~g~IG 251 (504)
T PLN02814 242 YKSKQRGSIG 251 (504)
T ss_pred hccCCCCeEE
Confidence 6777876
No 12
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=99.86 E-value=6.5e-23 Score=148.96 Aligned_cols=73 Identities=18% Similarity=0.135 Sum_probs=61.3
Q ss_pred eeecccceeCCCceeEEEEechhhhh-----h-cCCcc-ccc-cceeeeeccchhhHHHhHHHHHHHHHHHHHHhhcCCC
Q psy3005 5 VRCAHQVSCRPDQVKLWITINEPLEA-----M-QGYDF-KTY-APYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYKPS 76 (79)
Q Consensus 5 ~ya~~v~~~fgd~V~~W~TfNEpn~~-----~-~~y~~-g~~-~p~~~~~~~~~~~~~~h~~~~Aha~a~~~~k~~~~~~ 76 (79)
.||++||++|||+||+|+||||||++ . .||.. |.+ ||+...... .+++.||+++|||+|++++|+..+++
T Consensus 157 ~Ya~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~~~~~--~~~~~h~~llAHa~A~~~~~~~~~~~ 234 (477)
T PRK15014 157 RFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEET--MYQVLHHQFVASALAVKAARRINPEM 234 (477)
T ss_pred HHHHHHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCchhHH--HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 59999999999999999999999987 5 67874 664 453322233 79999999999999999999999998
Q ss_pred CCC
Q psy3005 77 QKG 79 (79)
Q Consensus 77 ~~g 79 (79)
|||
T Consensus 235 ~IG 237 (477)
T PRK15014 235 KVG 237 (477)
T ss_pred eEE
Confidence 887
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=99.86 E-value=7.6e-23 Score=146.84 Aligned_cols=73 Identities=32% Similarity=0.356 Sum_probs=65.4
Q ss_pred eeecccceeCCCceeEEEEechhhhhh-cCCccccccceeeeeccchhhHHHhHHHHHHHHHHHHHHhhcCCCCCC
Q psy3005 5 VRCAHQVSCRPDQVKLWITINEPLEAM-QGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYKPSQKG 79 (79)
Q Consensus 5 ~ya~~v~~~fgd~V~~W~TfNEpn~~~-~~y~~g~~~p~~~~~~~~~~~~~~h~~~~Aha~a~~~~k~~~~~~~~g 79 (79)
.||+.|+++|||+|++|+||||||+++ .+|..|.+||+..+... .+++.||+++|||+|++++|+..|++|||
T Consensus 140 ~ya~~~~~~~~d~v~~w~t~NEp~~~~~~~y~~G~~~P~~~~~~~--~~~~~hnll~Aha~A~~~~~~~~~~~~IG 213 (427)
T TIGR03356 140 EYAAVVAERLGDRVKHWITLNEPWCSAFLGYGLGVHAPGLRDLRA--ALQAAHHLLLAHGLAVQALRANGPGAQVG 213 (427)
T ss_pred HHHHHHHHHhCCcCCEEEEecCcceecccchhhccCCCCCccHHH--HHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 589999999999999999999999988 89988888887543344 68999999999999999999999999987
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=94.66 E-value=0.0093 Score=40.29 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.6
Q ss_pred eeecccceeCCCceeEEEEechhhh
Q psy3005 5 VRCAHQVSCRPDQVKLWITINEPLE 29 (79)
Q Consensus 5 ~ya~~v~~~fgd~V~~W~TfNEpn~ 29 (79)
.|++.+++||+++|..|-+.|||..
T Consensus 61 ~~i~~v~~ry~g~i~~wdV~NE~~~ 85 (254)
T smart00633 61 NHIKTVVGRYKGKIYAWDVVNEALH 85 (254)
T ss_pred HHHHHHHHHhCCcceEEEEeeeccc
Confidence 4778899999999999999999984
No 15
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=84.23 E-value=0.41 Score=32.18 Aligned_cols=15 Identities=27% Similarity=0.173 Sum_probs=13.5
Q ss_pred CCceeEEEEechhhh
Q psy3005 15 PDQVKLWITINEPLE 29 (79)
Q Consensus 15 gd~V~~W~TfNEpn~ 29 (79)
...++++++||||+.
T Consensus 63 ~~~~~~ll~fNEPD~ 77 (239)
T PF11790_consen 63 HPGSKHLLGFNEPDL 77 (239)
T ss_pred ccCccceeeecCCCC
Confidence 667999999999995
No 16
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=84.13 E-value=0.5 Score=22.24 Aligned_cols=14 Identities=29% Similarity=0.563 Sum_probs=9.9
Q ss_pred ceeEEEEechhhhhh
Q psy3005 17 QVKLWITINEPLEAM 31 (79)
Q Consensus 17 ~V~~W~TfNEpn~~~ 31 (79)
+|.+| |+|.++.+.
T Consensus 1 kV~~W-T~d~~~~~~ 14 (30)
T PF13653_consen 1 KVYFW-TPDKPASWR 14 (30)
T ss_dssp EEEEE-T--SHHHHH
T ss_pred CeEEe-cCCCHHHHH
Confidence 68999 999998764
No 17
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=79.06 E-value=0.87 Score=25.93 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=11.4
Q ss_pred CCceeEEEEech-hh
Q psy3005 15 PDQVKLWITINE-PL 28 (79)
Q Consensus 15 gd~V~~W~TfNE-pn 28 (79)
.++|-+|=.+|| |+
T Consensus 8 ~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 8 DPRILAWDLWNEPPN 22 (88)
T ss_dssp GGGEEEEESSTTTT-
T ss_pred CCCEEEEEeecCCCC
Confidence 349999999999 66
No 18
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=75.33 E-value=0.84 Score=33.72 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=30.5
Q ss_pred eecccceeCC-CceeEE--EEechhhhhhcCCccccccceeeeeccchhhHHHhHHHHHHHHHHHHHHhhcCCCCCC
Q psy3005 6 RCAHQVSCRP-DQVKLW--ITINEPLEAMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYKPSQKG 79 (79)
Q Consensus 6 ya~~v~~~fg-d~V~~W--~TfNEpn~~~~~y~~g~~~p~~~~~~~~~~~~~~h~~~~Aha~a~~~~k~~~~~~~~g 79 (79)
.++.+.+||| +.|+.| =+-||||... + +..+ . ..+ ...+ ...+++.+|+..|..|+|
T Consensus 141 ~~~h~~~RYG~~ev~~W~fEiWNEPd~~~--f----~~~~-----~--~~e-y~~l---y~~~~~~iK~~~p~~~vG 200 (486)
T PF01229_consen 141 FARHYIDRYGIEEVSTWYFEIWNEPDLKD--F----WWDG-----T--PEE-YFEL---YDATARAIKAVDPELKVG 200 (486)
T ss_dssp HHHHHHHHHHHHHHTTSEEEESS-TTSTT--T----SGGG--------HHH-HHHH---HHHHHHHHHHH-TTSEEE
T ss_pred HHHHHHhhcCCccccceeEEeCcCCCccc--c----cCCC-----C--HHH-HHHH---HHHHHHHHHHhCCCCccc
Confidence 3466677888 477755 6899999531 1 1111 0 011 1122 234567778888888876
No 19
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=52.33 E-value=5 Score=28.16 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=19.4
Q ss_pred eecccceeCCC--ceeEEEEechhh
Q psy3005 6 RCAHQVSCRPD--QVKLWITINEPL 28 (79)
Q Consensus 6 ya~~v~~~fgd--~V~~W~TfNEpn 28 (79)
|.+.+++||++ +|..|=..|||-
T Consensus 111 ~I~~v~~~y~~~g~i~~WDVvNE~i 135 (320)
T PF00331_consen 111 HIKTVVTRYKDKGRIYAWDVVNEAI 135 (320)
T ss_dssp HHHHHHHHTTTTTTESEEEEEES-B
T ss_pred HHHHHHhHhccccceEEEEEeeecc
Confidence 56788999995 999999999986
No 20
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=50.75 E-value=6 Score=28.53 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.6
Q ss_pred eecccceeCCCceeEEEEechhh
Q psy3005 6 RCAHQVSCRPDQVKLWITINEPL 28 (79)
Q Consensus 6 ya~~v~~~fgd~V~~W~TfNEpn 28 (79)
+-++|..||.++|..|=..|||-
T Consensus 130 hI~tV~~rYkg~~~sWDVVNE~v 152 (345)
T COG3693 130 HIKTVVGRYKGSVASWDVVNEAV 152 (345)
T ss_pred HHHHHHHhccCceeEEEeccccc
Confidence 45688999999999999999985
No 21
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=47.65 E-value=19 Score=24.78 Aligned_cols=25 Identities=24% Similarity=0.044 Sum_probs=14.6
Q ss_pred ecccceeCCCc-----eeEEEEechhhhhh
Q psy3005 7 CAHQVSCRPDQ-----VKLWITINEPLEAM 31 (79)
Q Consensus 7 a~~v~~~fgd~-----V~~W~TfNEpn~~~ 31 (79)
+..+..+||.. |++|.-=|||.+..
T Consensus 110 V~~l~~~~g~a~~~~gvk~y~lDNEP~LW~ 139 (239)
T PF12891_consen 110 VNYLVNKYGNASTNGGVKYYSLDNEPDLWH 139 (239)
T ss_dssp HHHHHHHH--TTSTTS--EEEESS-GGGHH
T ss_pred HHHHHHHHhccccCCCceEEEecCchHhhc
Confidence 34556666665 99999999999654
No 22
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=46.65 E-value=12 Score=23.96 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=15.0
Q ss_pred cccceeCCCceeEEEEechhhhhh
Q psy3005 8 AHQVSCRPDQVKLWITINEPLEAM 31 (79)
Q Consensus 8 ~~v~~~fgd~V~~W~TfNEpn~~~ 31 (79)
+.++-||-+. +.|+||+|=....
T Consensus 62 evvLvRfv~~-~mwVTF~dg~sAL 84 (146)
T PF08952_consen 62 EVVLVRFVGD-TMWVTFRDGQSAL 84 (146)
T ss_dssp -ECEEEEETT-CEEEEESSCHHHH
T ss_pred ceEEEEEeCC-eEEEEECccHHHH
Confidence 3444455454 8899999987543
No 23
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=46.15 E-value=8.4 Score=28.22 Aligned_cols=18 Identities=17% Similarity=-0.030 Sum_probs=10.8
Q ss_pred eeCCCceeEEEEechhhh
Q psy3005 12 SCRPDQVKLWITINEPLE 29 (79)
Q Consensus 12 ~~fgd~V~~W~TfNEpn~ 29 (79)
+..|=.|+|-..||||+.
T Consensus 168 ~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 168 KKWGINFDYISPFNEPQW 185 (384)
T ss_dssp HCTT--EEEEE--S-TTS
T ss_pred HhcCCccceeCCcCCCCC
Confidence 566779999999999983
No 24
>PF00942 CBM_3: Cellulose binding domain; InterPro: IPR001956 This domain is involved in cellulose binding [] and is found associated with a wide range of bacterial glycosyl hydrolases. The structure for this domain is known []; it forms a beta sandwich.; GO: 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2L8A_A 4TF4_B 3TF4_B 1JS4_A 1TF4_B 1NBC_A 2YLK_A 3ZQX_A 2XFG_B 2XBT_A ....
Probab=40.77 E-value=19 Score=20.27 Aligned_cols=10 Identities=30% Similarity=0.823 Sum_probs=8.4
Q ss_pred ceeEEEEech
Q psy3005 17 QVKLWITINE 26 (79)
Q Consensus 17 ~V~~W~TfNE 26 (79)
+|+||+|..|
T Consensus 35 ~iRYyft~d~ 44 (86)
T PF00942_consen 35 KIRYYFTIDE 44 (86)
T ss_dssp EEEEEEE-SS
T ss_pred EEEEEEecCC
Confidence 7999999999
No 25
>PLN02796 D-glycerate 3-kinase
Probab=38.99 E-value=14 Score=26.69 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=30.0
Q ss_pred CceeecccceeCCCce--eEEEEechh-hhhh-cCCcccccc
Q psy3005 3 QPVRCAHQVSCRPDQV--KLWITINEP-LEAM-QGYDFKTYA 40 (79)
Q Consensus 3 ~~~ya~~v~~~fgd~V--~~W~TfNEp-n~~~-~~y~~g~~~ 40 (79)
.|+|-+.....-|||+ +-|.++++| .++. -|++.|.-|
T Consensus 192 iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p 233 (347)
T PLN02796 192 VPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKP 233 (347)
T ss_pred cCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCC
Confidence 5889998888889987 479999988 4555 788877655
No 26
>TIGR01638 Atha_cystat_rel Arabidopsis thaliana cystatin-related protein. This model represents a family similar in sequence and probably homologous to a large family of cysteine proteinase inhibitors, or cystatins, as described by pfam model pfam00031. Cystatins may help plants resist attack by insects.
Probab=35.36 E-value=32 Score=20.29 Aligned_cols=13 Identities=23% Similarity=0.161 Sum_probs=11.1
Q ss_pred eeCCCceeEEEEe
Q psy3005 12 SCRPDQVKLWITI 24 (79)
Q Consensus 12 ~~fgd~V~~W~Tf 24 (79)
.++|....+||||
T Consensus 44 ~~~~~g~~~yITF 56 (92)
T TIGR01638 44 YRGGAKSKSYITF 56 (92)
T ss_pred eeccceEEEEEEE
Confidence 4678899999998
No 27
>COG5601 CDC36 General negative regulator of transcription subunit [Transcription]
Probab=27.49 E-value=23 Score=22.84 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=15.4
Q ss_pred eeCCCceeEEEEec---hhhhhh
Q psy3005 12 SCRPDQVKLWITIN---EPLEAM 31 (79)
Q Consensus 12 ~~fgd~V~~W~TfN---Epn~~~ 31 (79)
.+|..-.|-|+|+| ||-.-.
T Consensus 119 wrfhK~lk~wlT~~p~m~P~~~~ 141 (172)
T COG5601 119 WRFHKMLKCWLTFNPGMSPATAD 141 (172)
T ss_pred hhhhhhheeeeccCCCCCccccc
Confidence 36777789999999 886543
No 28
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=25.69 E-value=14 Score=24.24 Aligned_cols=24 Identities=21% Similarity=0.110 Sum_probs=18.4
Q ss_pred ecccceeC--CCceeEEEEechhhhh
Q psy3005 7 CAHQVSCR--PDQVKLWITINEPLEA 30 (79)
Q Consensus 7 a~~v~~~f--gd~V~~W~TfNEpn~~ 30 (79)
.+.+.++| .+.|-.|=.+|||+..
T Consensus 109 ~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 109 WRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred hhhhccccCCCCcEEEEEecCCcccc
Confidence 35677888 3478899999999954
No 29
>PF11405 Inhibitor_I67: Bromelain inhibitor VI; InterPro: IPR022713 Bromelain inhibitor VI is a double-chain inhibitor consisting of an 11-residue and a 41-residue chain. This protein is the 41-residue heavy chain which is joined to the 11-residue chain by disulphide bonds. The inhibitor acts to inhibit the cysteine proteinase bromelain. ; PDB: 2BI6_H 1BI6_H.
Probab=23.87 E-value=29 Score=16.93 Aligned_cols=15 Identities=13% Similarity=0.069 Sum_probs=10.6
Q ss_pred ceeecccceeCCCce
Q psy3005 4 PVRCAHQVSCRPDQV 18 (79)
Q Consensus 4 ~~ya~~v~~~fgd~V 18 (79)
|-||++|-.+||..+
T Consensus 15 pgfcktckaefgkyi 29 (41)
T PF11405_consen 15 PGFCKTCKAEFGKYI 29 (41)
T ss_dssp -TT-SSEEEETTEEE
T ss_pred chHHHHHHHHhcceE
Confidence 668889999998755
No 30
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=22.49 E-value=33 Score=25.08 Aligned_cols=12 Identities=25% Similarity=0.229 Sum_probs=9.6
Q ss_pred CceeecccceeC
Q psy3005 3 QPVRCAHQVSCR 14 (79)
Q Consensus 3 ~~~ya~~v~~~f 14 (79)
-++||++||++-
T Consensus 121 C~vyCRyCfRr~ 132 (369)
T COG1509 121 CAVYCRYCFRRR 132 (369)
T ss_pred ccceeeeccccc
Confidence 478999999863
No 31
>PF02407 Viral_Rep: Putative viral replication protein; InterPro: IPR003365 Proteins in this entry are essential for the replication of viral ssDNA. The closed circular ssDNA genome is first converted to a superhelical dsDNA. Rep and/or Rep' binds a specific hairpin at the genome origin of replication introducing an endonucleolytic nick within the conserved sequence 5'-AGTATTAC-3'. This initiates rolling circle replication (RCR). Following cleavage, the protein binds covalently to the 5'-phosphate of DNA as a tyrosyl ester. The cleavage gives rise to a free 3'-OH that serves as a primer for the cellular DNA polymerase. The polymerase synthesizes the (+) strand DNA by rolling circle mechanism. After one round of replication, a Rep-catalyzed nucleotidyl transfer reaction releases a circular single-stranded virus genome, thereby terminating the replication.; GO: 0016779 nucleotidyltransferase activity, 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters, 0042624 ATPase activity, uncoupled, 0006260 DNA replication, 0018142 protein-DNA covalent cross-linking; PDB: 2HW0_A 2HWT_A.
Probab=22.05 E-value=43 Score=19.23 Aligned_cols=11 Identities=45% Similarity=1.014 Sum_probs=5.6
Q ss_pred eEEE-Eechhhh
Q psy3005 19 KLWI-TINEPLE 29 (79)
Q Consensus 19 ~~W~-TfNEpn~ 29 (79)
+.|+ |+|-|.-
T Consensus 2 r~WcFTlNn~~~ 13 (86)
T PF02407_consen 2 RRWCFTLNNPTE 13 (86)
T ss_dssp S-EEEEEES--H
T ss_pred cEEEEEEeCCCc
Confidence 4565 9998863
No 32
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=21.88 E-value=34 Score=25.80 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=28.9
Q ss_pred CceeecccceeCCCcee--EEEEechh-hhhh-cCCcccccc
Q psy3005 3 QPVRCAHQVSCRPDQVK--LWITINEP-LEAM-QGYDFKTYA 40 (79)
Q Consensus 3 ~~~ya~~v~~~fgd~V~--~W~TfNEp-n~~~-~~y~~g~~~ 40 (79)
.|+|-+.....-|||++ .|.++++| .++. -|++.|..|
T Consensus 304 iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P 345 (460)
T PLN03046 304 VPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKP 345 (460)
T ss_pred cCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCC
Confidence 47888888888899875 49999998 4555 777777655
Done!