RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3005
(79 letters)
>gnl|CDD|215435 PLN02814, PLN02814, beta-glucosidase.
Length = 504
Score = 50.3 bits (120), Expect = 6e-09
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 16 DQVKLWITINEP-LEAMQGYD----FKTYAPYLSMTGVGGE-----YLAAHNMLRSHAKA 65
+ VKLW TINE + A+ Y + +P + G Y+A HNML +HA A
Sbjct: 175 EDVKLWTTINEATIFAIGSYGQGIRYGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASA 234
Query: 66 YRLYEKKYKPSQKG 79
LY+ KYK Q+G
Sbjct: 235 SNLYKLKYKSKQRG 248
>gnl|CDD|215809 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1.
Length = 454
Score = 45.4 bits (108), Expect = 3e-07
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 15 PDQVKLWITINEP-LEAMQGYDFKTYAPYL-SMTGVGGEYLAAHNMLRSHAKAYRLYEKK 72
D+VK W+T NEP + A GY +AP Y AAH++L +HA+A +LY +
Sbjct: 154 GDRVKYWLTFNEPWVAAWLGYGTGVHAPGGNDGVAP---YQAAHHLLLAHARAVKLYREH 210
>gnl|CDD|225343 COG2723, BglB,
Beta-glucosidase/6-phospho-beta-glucosidase/beta-
galactosidase [Carbohydrate transport and metabolism].
Length = 460
Score = 43.0 bits (102), Expect = 2e-06
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 14/69 (20%)
Query: 16 DQVKLWITINEPLEAMQGYDFKTYAPYLSMTGVGGE------YLAAHNMLRSHAKAYRLY 69
D+VK W T NEP + YL G Y AH+ML +HA A +
Sbjct: 158 DKVKYWFTFNEP--NVV-----VELGYLYGGHPPGIVDPKAAYQVAHHMLLAHALAVKAI 210
Query: 70 EKKYKPSQK 78
KK P K
Sbjct: 211 -KKINPKGK 218
>gnl|CDD|215455 PLN02849, PLN02849, beta-glucosidase.
Length = 503
Score = 41.1 bits (96), Expect = 1e-05
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 16 DQVKLWITINEP-LEAMQGYDFKTYAP---------YLSMTGVGGEYLAAHNMLRSHAKA 65
+ VK W TINE + + GY+ P S Y+ HN+L +HA
Sbjct: 177 NHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASV 236
Query: 66 YRLYEKKYKPSQKG 79
RLY++KYK Q G
Sbjct: 237 SRLYKQKYKDMQGG 250
>gnl|CDD|234180 TIGR03356, BGL, beta-galactosidase.
Length = 426
Score = 39.9 bits (94), Expect = 2e-05
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYK 74
D+VK WIT+NEP A GY +AP + + AAH++L +H A +
Sbjct: 150 DRVKHWITLNEPWCSAFLGYGLGVHAP--GLRDLRAALRAAHHLLLAHGLAVQALRANGP 207
Query: 75 PSQKG 79
++ G
Sbjct: 208 GAKVG 212
>gnl|CDD|215539 PLN02998, PLN02998, beta-glucosidase.
Length = 497
Score = 37.8 bits (87), Expect = 1e-04
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 16 DQVKLWITINE-PLEAMQGYDFKTYAPYLSMTGVG----------GEYLAAHNMLRSHAK 64
D+V W TINE + A+ GYD P G Y+A HNML +HA
Sbjct: 180 DRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHAS 239
Query: 65 AYRLYEKKYK 74
A LY+++YK
Sbjct: 240 ATILYKQQYK 249
>gnl|CDD|184102 PRK13511, PRK13511, 6-phospho-beta-galactosidase; Provisional.
Length = 469
Score = 36.5 bits (85), Expect = 4e-04
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 17 QVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKK 72
+VK W T NE Y + P + + + + HNM+ +HA+A +L++ K
Sbjct: 151 EVKYWTTFNEIGPIGDGQYLVGKFPPGIKYD-LAKVFQSHHNMMVAHARAVKLFKDK 206
>gnl|CDD|130300 TIGR01233, lacG, 6-phospho-beta-galactosidase. This enzyme is part
of the tagatose-6-phosphate pathway of
galactose-6-phosphate degradation [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 467
Score = 36.2 bits (83), Expect = 5e-04
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 17 QVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYKP 75
+V W T NE Y + P + + + + HNM+ SHA+A +LY+ K
Sbjct: 150 EVNYWTTFNEIGPIGDGQYLVGKFPPGIKYD-LAKVFQSHHNMMVSHARAVKLYKDKGYK 208
Query: 76 SQKG 79
+ G
Sbjct: 209 GEIG 212
>gnl|CDD|152872 pfam12438, DUF3679, Protein of unknown function (DUF3679). This
domain family is found in bacteria, and is
approximately 60 amino acids in length.
Length = 56
Score = 28.0 bits (63), Expect = 0.15
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 25 NEPLEAMQGYDFKTYAPYLSMTGVGGEYLAA 55
N +++M+GYD + +T + A
Sbjct: 21 NHGMKSMKGYDDPSLEQAFHITKTEEGEVEA 51
>gnl|CDD|238394 cd00771, ThrRS_core, Threonyl-tRNA synthetase (ThrRS) class II core
catalytic domain. ThrRS is a homodimer. It is
responsible for the attachment of threonine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its structure and the presence of three
characteristic sequence motifs in the core domain.
Length = 298
Score = 24.4 bits (54), Expect = 8.2
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 5 VRCAHQ----VSCRPDQVKLWI--TINEPLEAMQGYDFKTYAPYLSM 45
VR Q + C PDQ+K I ++ E + F Y LS
Sbjct: 135 VRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFFDYKVELST 181
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.418
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,935,224
Number of extensions: 290532
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 10
Length of query: 79
Length of database: 10,937,602
Length adjustment: 48
Effective length of query: 31
Effective length of database: 8,808,610
Effective search space: 273066910
Effective search space used: 273066910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)