RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3005
(79 letters)
>1wcg_A Thioglucosidase, myrosinase; aphid, beta-glucosidase, insect,
beta-barrel, hydrolase, glycosidase; 1.10A {Brevicoryne
brassicae} SCOP: c.1.8.4
Length = 464
Score = 89.1 bits (222), Expect = 6e-23
Identities = 34/64 (53%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 16 DQVKLWITINEPLEAMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYKP 75
D+VK WIT NEP+ +GY K YAP L++ G YLA H L +H KAYRLYE+ +KP
Sbjct: 157 DRVKWWITFNEPIAVCKGYSIKAYAPNLNLKTTG-HYLAGHTQLIAHGKAYRLYEEMFKP 215
Query: 76 SQKG 79
+Q G
Sbjct: 216 TQNG 219
>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET:
BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A*
3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A*
3vij_A* 3vik_A* 3vil_A*
Length = 487
Score = 87.2 bits (217), Expect = 3e-22
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 16 DQVKLWITINEPL-EAMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYK 74
D+VKLW+T NEPL AP ++ G+G +YLAAH ++ +HA+ Y LY+++++
Sbjct: 164 DRVKLWLTFNEPLTFMDGYASEIGMAPSINTPGIG-DYLAAHTVIHAHARIYHLYDQEFR 222
Query: 75 PSQKG 79
Q G
Sbjct: 223 AEQGG 227
>2e9l_A Cytosolic beta-glucosidase; novel cytosolic neutral
beta-glycosylceramidase, hydrolase; HET: BGC PLM OLA;
1.60A {Homo sapiens} PDB: 2e9m_A* 2zox_A* 2jfe_X*
Length = 469
Score = 85.6 bits (213), Expect = 1e-21
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYK 74
D+VK WITINE ++ YD + P + G GG Y AAHN++++HA+++ Y+ ++
Sbjct: 155 DRVKQWITINEANVLSVMSYDLGMFPPGIPHFGTGG-YQAAHNLIKAHARSWHSYDSLFR 213
Query: 75 PSQKG 79
QKG
Sbjct: 214 KKQKG 218
>2jf7_A Strictosidine-O-beta-D-glucosidase; alkaloid, hydrolase; 2.48A
{Rauvolfia serpentina} PDB: 2jf6_A
Length = 532
Score = 84.2 bits (209), Expect = 3e-21
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVGGE-----YLAAHNMLRSHAKAYRLY 69
D++K W T NEP A+ GY +AP G G+ Y+ HN+L +H A Y
Sbjct: 197 DKIKYWTTFNEPHTFAVNGYALGEFAPGRGGKGDEGDPAIEPYVVTHNILLAHKAAVEEY 256
Query: 70 EKKYKPSQKG 79
K++ Q+G
Sbjct: 257 RNKFQKCQEG 266
>2dga_A Beta-glucosidase; alpha/beta barrel, hydrolase; 1.80A {Triticum
aestivum} PDB: 3aiq_A* 3air_A* 3ais_A* 3aiu_A 3aiv_A*
3aiw_A*
Length = 565
Score = 81.9 bits (203), Expect = 3e-20
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVGGE----------YLAAHNMLRSHAK 64
D+VK W T NEP Y +AP G+ Y A H++L +HA+
Sbjct: 226 DRVKNWFTFNEPHTYCCFSYGEGIHAPGRCSPGMDCAVPEGDSLREPYTAGHHILLAHAE 285
Query: 65 AYRLYEKKYKPSQKG 79
A +L++ +Y
Sbjct: 286 AVQLFKARYNMHGDS 300
>2e3z_A Beta-glucosidase; TIM barrel, glycoside hydrolase family 1, CLAN
GH-A, structural genomics, NPPSFA; 1.50A {Phanerochaete
chrysosporium} PDB: 2e40_A*
Length = 465
Score = 81.0 bits (201), Expect = 4e-20
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAP-YLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKY 73
D V+ WIT NEP ++ GY +AP ++S T ++ +H+++ +HA A +LY ++
Sbjct: 163 DLVQNWITFNEPWVISVMGYGNGIFAPGHVSNTEP---WIVSHHIILAHAHAVKLYRDEF 219
Query: 74 KPSQKG 79
K Q G
Sbjct: 220 KEKQGG 225
>3f5l_A Beta-glucosidase; beta-alpha-barrels, glycosidase, hydrolase; HET:
LB2 MES; 1.37A {Oryza sativa japonica group} PDB:
3aht_A* 3ahv_A* 3f5i_A* 3f5j_A* 3f5k_A* 3f4v_A* 2rgm_A*
2rgl_A* 3scu_A* 3scn_A* 3sco_A* 3sct_A* 3scv_A* 3scw_A*
Length = 481
Score = 80.6 bits (200), Expect = 7e-20
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAP-YLSMTGVGGE-----YLAAHNMLRSHAKAYRL 68
++VK W T N+P A+ GYD T P + GG Y+ AHN L SHA A
Sbjct: 171 NRVKHWFTFNQPRIVALLGYDQGTNPPKRCTKCAAGGNSATEPYIVAHNFLLSHAAAVAR 230
Query: 69 YEKKYKPSQKG 79
Y KY+ +Q+G
Sbjct: 231 YRTKYQAAQQG 241
>1cbg_A Cyanogenic beta-glucosidase; hydrolase (O-glycosyl); 2.15A
{Trifolium repens} SCOP: c.1.8.4
Length = 490
Score = 80.7 bits (200), Expect = 7e-20
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVG----------GEYLAAHNMLRSHAK 64
D+VK WIT+NEP +M Y + T+AP + YLAAH L +HA
Sbjct: 173 DRVKHWITLNEPWGVSMNAYAYGTFAPGRCSDWLKLNCTGGDSGREPYLAAHYQLLAHAA 232
Query: 65 AYRLYEKKYKPSQKG 79
A RLY+ KY+ SQ G
Sbjct: 233 AARLYKTKYQASQNG 247
>3ptm_A Beta-glucosidase OS4BGlu12; beta-alpha barrel, glycosidase,
hydrolase; HET: G2F; 2.40A {Oryza sativa} PDB: 3ptk_A*
3ptq_A*
Length = 505
Score = 80.3 bits (199), Expect = 9e-20
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAP-----YLSMTGVGGE-----YLAAHNMLRSHAK 64
D+VK WIT NEP GY +AP + G+ Y A H+ L +HA+
Sbjct: 188 DRVKNWITFNEPWTFCSNGYATGLFAPGRCSPWEKGNCSVGDSGREPYTACHHQLLAHAE 247
Query: 65 AYRLYEKKYKPSQKG 79
RLY+ KY+ QKG
Sbjct: 248 TVRLYKAKYQALQKG 262
>3gnp_A OS03G0212800 protein; beta-alpha barrel, glycosidase, hydrolase;
HET: SOG; 1.80A {Oryza sativa subsp} PDB: 3gno_A*
3gnr_A*
Length = 488
Score = 79.9 bits (198), Expect = 1e-19
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAP-----YLSMTGVGGE-----YLAAHNMLRSHAK 64
D+VK WIT+NEP A+QGYD AP L + G Y+ AH+ + +HA
Sbjct: 168 DRVKHWITLNEPHTVAIQGYDAGLQAPGRCSVLLHLYCKAGNSGTEPYVVAHHFILAHAA 227
Query: 65 AYRLYEKKYKPSQKG 79
A +Y KYK +Q G
Sbjct: 228 AASIYRTKYKATQNG 242
>1v02_A Dhurrinase, dhurrinase-1; beta-glucosidase, dhurrin hydrolysis,
PEST defense, family GH1, hydrolase; 1.9A {Sorghum
bicolor} SCOP: c.1.8.4 PDB: 1v02_E 1v03_A*
Length = 565
Score = 78.8 bits (195), Expect = 3e-19
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVGGE----------YLAAHNMLRSHAK 64
VK W+T NEP Y AP GV Y+ AHN+LR+HA+
Sbjct: 230 KTVKNWLTFNEPETFCSVSYGTGVLAPGRCSPGVSCAVPTGNSLSEPYIVAHNLLRAHAE 289
Query: 65 AYRLYEKKYKPSQKG 79
+Y KY G
Sbjct: 290 TVDIY-NKYHKGADG 303
>3ahy_A Beta-glucosidase; cellulases, glycosyl hydrolase, manganese
enhancement, hydro; 1.63A {Trichoderma reesei}
Length = 473
Score = 76.9 bits (190), Expect = 1e-18
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYK 74
+V+ WIT NEPL A+ GY T+AP + HN+L +H +A + Y +K
Sbjct: 162 PKVRNWITFNEPLCSAIPGYGSGTFAP--GRQSTSEPWTVGHNILVAHGRAVKAYRDDFK 219
Query: 75 PSQ 77
P+
Sbjct: 220 PAS 222
>1v08_A Beta-glucosidase; glycoside hydrolase, dimboa-glucoside, inhibitor,
PEST defense, family GH1, hydrolase, chloroplast,
transit peptide, 3D-structure; HET: NTZ; 1.9A {Zea mays}
SCOP: c.1.8.4 PDB: 1e4l_A* 1e4n_A* 1e56_A* 1e55_A*
1e1e_A 1e1f_A* 1h49_A* 1hxj_A
Length = 512
Score = 76.5 bits (189), Expect = 2e-18
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVGGE----------YLAAHNMLRSHAK 64
D+VK W+T N+P Y +AP G+ Y A HN+L +HA+
Sbjct: 181 DKVKNWLTFNDPQTFTSFSYGTGVFAPGRCSPGLDCAYPTGNSLVEPYTAGHNILLAHAE 240
Query: 65 AYRLYEKKYKPSQKG 79
A LY K YK
Sbjct: 241 AVDLYNKHYK-RDDT 254
>1e4m_M Myrosinase MA1; hydrolase, family 1 glycosyl hydrolase,
glucosinolate, TIM B; HET: NAG FUC BMA MAN; 1.2A
{Sinapis alba} SCOP: c.1.8.4 PDB: 1e6q_M* 1e6s_M*
1e6x_M* 1e70_M* 1e71_M* 1e72_M* 1e73_M* 1w9b_M* 1w9d_M*
2wxd_M* 1dwa_M* 1dwf_M* 1dwg_M* 1dwh_M* 1dwi_M* 1dwj_M*
1myr_A*
Length = 501
Score = 74.9 bits (185), Expect = 7e-18
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 12/75 (16%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVGGE----------YLAAHNMLRSHAK 64
D VK W+TIN+ +GY AP V Y+ AH+ L +HAK
Sbjct: 177 DSVKYWLTINQLYSVPTRGYGSALDAPGRCSPTVDPSCYAGNSSTEPYIVAHHQLLAHAK 236
Query: 65 AYRLYEKKYKPSQKG 79
LY K Y Q G
Sbjct: 237 VVDLYRKNYT-HQGG 250
>4a3y_A Raucaffricine-O-beta-D-glucosidase; hydrolase, alkaloid; 2.15A
{Rauvolfia serpentina} PDB: 3u5u_A 3u57_A 3u5y_A*
Length = 540
Score = 73.9 bits (182), Expect = 1e-17
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 28/92 (30%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVG------------------------- 49
D+VK W+T+NEP ++ GY YAP T
Sbjct: 176 DRVKHWMTLNEPWTFSVHGYATGLYAPGRGRTSPEHVNHPTVQHRCSTVAPQCICSTGNP 235
Query: 50 --GEYLAAHNMLRSHAKAYRLYEKKYKPSQKG 79
Y H++L +HA A LY+ K++ Q+G
Sbjct: 236 GTEPYWVTHHLLLAHAAAVELYKNKFQRGQEG 267
>2j78_A Beta-glucosidase A; family 1, hydrolase, inhibitor, glycosidase,
polysaccharide degradation, transition state mimic,
carbohydrate metabolism; HET: GOX; 1.65A {Thermotoga
maritima} SCOP: c.1.8.4 PDB: 1oif_A* 1oim_A* 1oin_A*
1od0_A* 1w3j_A* 1uz1_A* 2cbv_A* 2ces_A* 2cet_A* 2j75_A*
2j77_A* 2cbu_A* 2j79_A* 2j7b_A* 2j7c_A* 2j7d_A* 2j7e_A*
2j7f_A* 2j7g_A* 2j7h_A* ...
Length = 468
Score = 66.4 bits (163), Expect = 6e-15
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYK 74
D+VK WIT+NEP A+ G+ + +AP M + + A HN+LR+HA+A +++ + K
Sbjct: 178 DRVKNWITLNEPWVVAIVGHLYGVHAP--GMRDIYVAFRAVHNLLRAHARAVKVFRETVK 235
Query: 75 PSQKG 79
+ G
Sbjct: 236 DGKIG 240
>1gnx_A Beta-glucosidase; hydrolase, glycosyltransferase, family 1 of
glycosyl hydrolase; HET: SUC; 1.68A {Streptomyces SP}
SCOP: c.1.8.4 PDB: 1gon_A
Length = 479
Score = 66.0 bits (162), Expect = 8e-15
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 16 DQVKLWITINEPL-EAMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYK 74
D+VK W T+NEP A GY +AP T AAH++ H A + +
Sbjct: 168 DRVKTWTTLNEPWCSAFLGYGSGVHAP--GRTDPVAALRAAHHLNLGHGLAVQALRDRLP 225
Query: 75 PSQK 78
+
Sbjct: 226 ADAQ 229
>3fj0_A Beta-glucosidase; BGLB,BGL, hydrolase, glycosidase; HET: BGC; 1.15A
{Uncultured bacterium} PDB: 3cmj_A 3fiz_A* 3fiy_A*
Length = 465
Score = 64.1 bits (157), Expect = 4e-14
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYK 74
DQ+ LW+T NEP+ GY +AP + AH++L SH +A + +
Sbjct: 176 DQIPLWVTHNEPMVTVWAGYHMGLFAP--GLKDPTLGGRVAHHLLLSHGQALQAFRALSP 233
Query: 75 PSQK 78
+
Sbjct: 234 AGSQ 237
>2o9p_A Beta-glucosidase B; family 1 glycoside hydrolase; 2.10A
{Paenibacillus polymyxa} PDB: 2o9t_A* 2z1s_A* 2jie_A*
2o9r_A*
Length = 454
Score = 63.3 bits (155), Expect = 8e-14
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYK 74
+++ W TINEP ++ GY +AP + AAH++L H A L+++K
Sbjct: 163 ERINWWNTINEPYCASILGYGTGEHAP--GHENWREAFTAAHHILMCHGIASNLHKEKGL 220
Query: 75 PSQKG 79
+ G
Sbjct: 221 TGKIG 225
>1qox_A Beta-glucosidase; hydrolase, cellulose degradation; 2.7A {Bacillus
circulans} SCOP: c.1.8.4
Length = 449
Score = 63.3 bits (155), Expect = 8e-14
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYK 74
++K WIT NEP A +AP + +H++L +H +A L+ +
Sbjct: 155 GKIKQWITFNEPWCMAFLSNYLGVHAP--GNKDLQLAIDVSHHLLVAHGRAVTLFRELGI 212
Query: 75 PSQKG 79
+ G
Sbjct: 213 SGEIG 217
>3ahx_A Beta-glucosidase A; cellulases, glycosyl hydrolase, manganese
enhancement, hydro; HET: 7PE; 1.90A {Clostridium
cellulovorans}
Length = 453
Score = 62.1 bits (152), Expect = 2e-13
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYK 74
D+VK WIT NEP + GY +AP + + LAAHN+L SH KA + Y + +
Sbjct: 156 DRVKTWITHNEPWVASYLGYALGVHAP--GIKDMKMALLAAHNILLSHFKAVKAYRELEQ 213
Query: 75 PSQKG 79
Q G
Sbjct: 214 DGQIG 218
>1e4i_A Beta-glucosidase; hydrolase, family 1 glycosyl hydrolase, covalent
enzyme-GLYC intermediate, alpha/beta barrel; HET: G2F
NFG; 2.00A {Bacillus polymyxa} SCOP: c.1.8.4 PDB: 1tr1_A
1bgg_A* 1bga_A 1uyq_A*
Length = 447
Score = 62.1 bits (152), Expect = 2e-13
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYK 74
+++ W+T NEP A +AP +T + H++L +H + R + +
Sbjct: 155 GKIQHWLTFNEPWCIAFLSNMLGVHAP--GLTNLQTAIDVGHHLLVAHGLSVRRFRELGT 212
Query: 75 PSQKG 79
Q G
Sbjct: 213 SGQIG 217
>1qvb_A Beta-glycosidase; TIM-barrel, thermostable, hydrolase; 2.40A
{Thermosphaera aggregans} SCOP: c.1.8.4
Length = 481
Score = 61.9 bits (151), Expect = 3e-13
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKT--YAP-YLSMTGVGGEYLAAHNMLRSHAKAYRLYEK 71
+ +W T+NEP QGY F + P YLS+ A NM+++HA+AY ++
Sbjct: 198 ELPVMWSTMNEPNVVYEQGYMFVKGGFPPGYLSLEAA---DKARRNMIQAHARAYDNIKR 254
Query: 72 KYK 74
K
Sbjct: 255 FSK 257
>1vff_A Beta-glucosidase; glycosyl hydrolase, membrane-bound enzyme,
thermostability, TIM barrel, alkylglucosides; 2.50A
{Pyrococcus horikoshii} SCOP: c.1.8.4
Length = 423
Score = 61.0 bits (149), Expect = 6e-13
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYK 74
++VKL T NEP+ M GY + P++ + A N+L++HA AY L K+K
Sbjct: 145 EKVKLVATFNEPMVYVMMGYLTAYWPPFI--RSPFKAFKVAANLLKAHAIAYELLHGKFK 202
>3ta9_A Glycoside hydrolase family 1; TIM barrel, glucosidase; 3.00A
{Halothermothrix orenii}
Length = 458
Score = 60.6 bits (148), Expect = 7e-13
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYK 74
V LW+T NEP A +G+ F +AP AH++L SH A ++ ++
Sbjct: 163 GLVDLWVTHNEPWVVAFEGHAFGNHAP--GTKDFKTALQVAHHLLLSHGMAVDIFREEDL 220
Query: 75 PSQKG 79
P + G
Sbjct: 221 PGEIG 225
>4eam_A Lactase, beta-galactosidase; glycoside hydrolase, chemical biology,
allosteric activation switchable enzyme, chemical
rescue; 1.70A {Sulfolobus solfataricus P2} PDB: 4ean_A
1uws_A* 1uwr_A* 1uwq_A* 1uwt_A* 1uwu_A* 2ceq_A* 2cer_A*
1gow_A 1uwi_A
Length = 489
Score = 59.6 bits (145), Expect = 2e-12
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKT--YAP-YLSMTGVGGEYLAAHNMLRSHAKAYRLYEK 71
D V + T+NEP GY + P YLS A +N++++HA+AY +
Sbjct: 196 DLVDEYSTMNEPNVVGGLGYVGVKSGFPPGYLSFELS---RRAMYNIIQAHARAYDGIKS 252
Query: 72 KYK 74
K
Sbjct: 253 VSK 255
>3apg_A Beta-glucosidase; TIM barrel, hydrolase, sugar binding, hydrolysis;
2.35A {Pyrococcus furiosus}
Length = 473
Score = 59.2 bits (144), Expect = 2e-12
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 16 DQVKLWITINEPLE-AMQGYDFK--TYAP-YLSMTGVGGEYLAAHNMLRSHAKAYRLYEK 71
D V +W T+NEP QGY + P YLS A N++++H AY ++
Sbjct: 198 DLVDMWSTMNEPNVVYNQGYINLRSGFPPGYLSFEAA---EKAKFNLIQAHIGAYDAIKE 254
Query: 72 KYK 74
+
Sbjct: 255 YSE 257
>1ug6_A Beta-glycosidase; glucosidase, atomic resolution, riken structural
genomics/PR initiative, RSGI, structural genomics,
hydrolase; 0.99A {Thermus thermophilus} SCOP: c.1.8.4
PDB: 1np2_A
Length = 431
Score = 58.6 bits (143), Expect = 4e-12
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 16 DQVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYK 74
D+V + T+NEP A G+ +AP + + AAH++L H A
Sbjct: 154 DRVPFFATLNEPWCSAFLGHWTGEHAP--GLRNLEAALRAAHHLLLGHGLAVEALRAAGA 211
>1pbg_A PGAL, 6-phospho-beta-D-galactosidase; hydrolase (glycosyl
hydrolase); 2.30A {Lactococcus lactis} SCOP: c.1.8.4
PDB: 3pbg_A 2pbg_A 4pbg_A*
Length = 468
Score = 58.4 bits (142), Expect = 5e-12
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 18 VKLWITINEPL-EAMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYKPS 76
V W T NE Y + P + + + HNM+ SHA+A +LY+ K
Sbjct: 152 VNYWTTFNEIGPIGDGQYLVGKFPPGIKYDLAKV-FQSHHNMMVSHARAVKLYKDKGYKG 210
Query: 77 QKG 79
+ G
Sbjct: 211 EIG 213
>2xhy_A BGLA, 6-phospho-beta-glucosidase BGLA; hydrolase, glycosidase;
2.30A {Escherichia coli}
Length = 479
Score = 35.9 bits (84), Expect = 4e-04
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 11/71 (15%)
Query: 16 DQVKLWITINEPLEAMQGYDFKTYAPYLSMTGVGGE--------YLAAHNMLRSHAKAYR 67
+VK W+T NE Q Y V E Y H+ + A A +
Sbjct: 170 HKVKYWMTFNEI--NNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVK 227
Query: 68 LYEKKYKPSQK 78
++ P K
Sbjct: 228 AA-RRINPEMK 237
>4dde_A 6-phospho-beta-glucosidase; structural genomics, PSI-biology,
protein structure initiati midwest center for structural
genomics, MCSG; HET: BG6; 1.45A {Streptococcus mutans}
PDB: 3pn8_A* 4f66_A* 4f79_A*
Length = 480
Score = 35.2 bits (82), Expect = 8e-04
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 12/59 (20%)
Query: 16 DQVKLWITINEPLEAMQGYDFKTYAPYLSMTGVGGE---------YLAAHNMLRSHAKA 65
D+VK W+T NE Q + +AP+ + +G+ + Y AAH L + A+A
Sbjct: 169 DKVKYWMTFNEI--NNQANYQEDFAPFTN-SGIVYKEGDDREAIMYQAAHYELVASARA 224
>3qom_A 6-phospho-beta-glucosidase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, glycoside
hydrolase, hydrolase; HET: BGC; 1.50A {Lactobacillus
plantarum}
Length = 481
Score = 34.0 bits (79), Expect = 0.002
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 16 DQVKLWITINEP-LEAMQGYDFKTYAP--YLSMTGVGGE---YLAAHNMLRSHAKA 65
D+V W+T NE + D + G E Y AAH L + A A
Sbjct: 173 DKVTYWMTFNEINNQTNFESDGAMLTDSGIIHQPGENRERWMYQAAHYELVASAAA 228
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 0.63
Identities = 8/51 (15%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 23 TINEPLEAMQG-YDFKTYAPYLS-MTGVGGEYLAAHNMLRSHAKAYRLYEK 71
++ E ++ Y TY + + E L+ ++R+ A +++ +
Sbjct: 165 NTDDYFEELRDLYQ--TYHVLVGDLIKFSAETLS--ELIRTTLDAEKVFTQ 211
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 0.74
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 14/57 (24%)
Query: 9 HQVSCRPDQVKLWITINEPLEAMQGYDFKTYAPYLS---MTGVGGEYLAAHNMLRSH 62
+ VS R + + L ++ A + + G G ++A ++ S+
Sbjct: 129 YNVS-RLQPYL---KLRQALLELRP------AKNVLIDGVLGSGKTWVAL-DVCLSY 174
Score = 24.8 bits (53), Expect = 3.3
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 28/88 (31%)
Query: 17 QVKL------WITINEPLEAMQGYDFKTYAPYLS--------MTGVGGEYL--AAHNMLR 60
+ K+ W L +Q K Y PY+ + ++L N++
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQ--QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 61 S-HAKAYRL---------YEKKYKPSQK 78
S + R+ +E+ +K Q+
Sbjct: 562 SKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 24.4 bits (52), Expect = 5.6
Identities = 11/85 (12%), Positives = 22/85 (25%), Gaps = 27/85 (31%)
Query: 15 PDQVK--------LW--ITINEPLEAM-----------QGYDFKTYAP--YLSMTGVGGE 51
P +W + ++ + + Q + P YL +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 52 YLAAHNMLRSHAKAYRLYEKKYKPS 76
A H + H Y + K +
Sbjct: 442 EYALHRSIVDH---YNIP-KTFDSD 462
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.5 bits (52), Expect = 4.1
Identities = 5/16 (31%), Positives = 8/16 (50%), Gaps = 1/16 (6%)
Query: 26 EPLEAMQGYDFKTYAP 41
+ L+ +Q K YA
Sbjct: 20 QALKKLQA-SLKLYAD 34
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo
sapiens} PDB: 3tad_A
Length = 334
Score = 24.5 bits (52), Expect = 5.0
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 15 PDQVKLWITINEPLEAMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRL 68
V +W + + + +Q + YA + +GV G +A + A L
Sbjct: 243 IKDVLVW-SNDRVIRWIQAIGLREYANNILESGVHGSLIALDENFDYSSLALLL 295
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.418
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,211,744
Number of extensions: 57584
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 40
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)