RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3005
(79 letters)
>d1cbga_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Creeping
white clover (Trifolium repens) [TaxId: 3899]}
Length = 490
Score = 40.6 bits (94), Expect = 3e-06
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 7 CAHQVSCRPDQVKLWITINEP-LEAMQGYDFKTYAPYLSMTGVGGE----------YLAA 55
D+VK WIT+NEP +M Y + T+AP + YLAA
Sbjct: 164 AELCFKEFGDRVKHWITLNEPWGVSMNAYAYGTFAPGRCSDWLKLNCTGGDSGREPYLAA 223
Query: 56 HNMLRSHAKAYRLYEKKYKPSQKG 79
H L +HA A RLY+ KY+ SQ G
Sbjct: 224 HYQLLAHAAAARLYKTKYQASQNG 247
>d1wcga1 c.1.8.4 (A:3-464) Thioglucosidase {Cabbage aphid
(Brevicoryne brassicae) [TaxId: 69196]}
Length = 462
Score = 38.3 bits (88), Expect = 3e-05
Identities = 33/73 (45%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 7 CAHQVSCRPDQVKLWITINEPLEAMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAY 66
+ D+VK WIT NEP+ +GY K YAP G YLA H L +H KAY
Sbjct: 146 ARVLFTYFGDRVKWWITFNEPIAVCKGYSIKAYAPN-LNLKTTGHYLAGHTQLIAHGKAY 204
Query: 67 RLYEKKYKPSQKG 79
RLYE+ +KP+Q G
Sbjct: 205 RLYEEMFKPTQNG 217
>d1pbga_ c.1.8.4 (A:) 6-phospho-beta-D-galactosidase, PGAL
{Lactococcus lactis [TaxId: 1358]}
Length = 468
Score = 37.9 bits (87), Expect = 3e-05
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 16 DQVKLWITINEPLEAMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKYKP 75
+V W T NE G P + + + HNM+ SHA+A +LY+ K
Sbjct: 150 PEVNYWTTFNEIGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVSHARAVKLYKDKGYK 209
Query: 76 SQKG 79
+ G
Sbjct: 210 GEIG 213
>d2j78a1 c.1.8.4 (A:3-445) Beta-glucosidase A {Thermotoga maritima
[TaxId: 2336]}
Length = 443
Score = 36.7 bits (84), Expect = 7e-05
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 7 CAHQVSCRPDQVKLWITINEP-LEAMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKA 65
D+VK WIT+NEP + A+ G+ + +AP + V + A HN+LR+HA+A
Sbjct: 145 SRVLFENFGDRVKNWITLNEPWVVAIVGHLYGVHAPGMRDIYVA--FRAVHNLLRAHARA 202
Query: 66 YRLYEKKYKPSQKG 79
+++ + K + G
Sbjct: 203 VKVFRETVKDGKIG 216
>d1vffa1 c.1.8.4 (A:1-423) Beta-glucosidase A {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 423
Score = 35.6 bits (81), Expect = 2e-04
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 5 VRCAHQVSCRPDQVKLWITINEPLEAMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAK 64
+ +V+ ++VKL T NEP+ + Y P + + A N+L++HA
Sbjct: 134 EKYIEKVAELLEKVKLVATFNEPMVYVMMGYLTAYWPPFIRSPFKA-FKVAANLLKAHAI 192
Query: 65 AYRLYEKKYKPSQKG 79
AY L K+K
Sbjct: 193 AYELLHGKFKVGIVK 207
>d1e4mm_ c.1.8.4 (M:) Plant beta-glucosidase (myrosinase) {White
mustard (Sinapis alba) [TaxId: 3728]}
Length = 499
Score = 35.6 bits (81), Expect = 2e-04
Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 11/80 (13%)
Query: 6 RCAHQVSCRPDQVKLWITINEPLE-AMQGYDFKTYAPYLSMTGVGGE----------YLA 54
D VK W+TIN+ +GY AP V Y+
Sbjct: 165 YADLCFEEFGDSVKYWLTINQLYSVPTRGYGSALDAPGRCSPTVDPSCYAGNSSTEPYIV 224
Query: 55 AHNMLRSHAKAYRLYEKKYK 74
AH+ L +HAK LY K Y
Sbjct: 225 AHHQLLAHAKVVDLYRKNYT 244
>d1v02a_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Sorghum
bicolor [TaxId: 4558]}
Length = 484
Score = 35.2 bits (80), Expect = 3e-04
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 16 DQVKLWITINEP-LEAMQGYDFKTYAPYLSMTGVGG----------EYLAAHNMLRSHAK 64
VK W+T NEP Y AP GV Y+ AHN+LR+HA+
Sbjct: 167 KTVKNWLTFNEPETFCSVSYGTGVLAPGRCSPGVSCAVPTGNSLSEPYIVAHNLLRAHAE 226
Query: 65 AYRLYEKKYKPSQKG 79
+Y KY G
Sbjct: 227 TVDIY-NKYHKGADG 240
>d1e4ia_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus polymyxa [TaxId:
1406]}
Length = 447
Score = 35.2 bits (80), Expect = 3e-04
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 6 RCAHQVSCRPDQVKLWITINEP-LEAMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAK 64
+++ W+T NEP A +AP L+ H++L +H
Sbjct: 145 FAETMFREFHGKIQHWLTFNEPWCIAFLSNMLGVHAPGLTNLQTA--IDVGHHLLVAHGL 202
Query: 65 AYRLYEKKYKPSQ 77
+ R + + Q
Sbjct: 203 SVRRFRELGTSGQ 215
>d1ug6a_ c.1.8.4 (A:) Beta-glucosidase A {Thermus thermophilus
[TaxId: 274]}
Length = 426
Score = 34.0 bits (77), Expect = 8e-04
Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 1/69 (1%)
Query: 6 RCAHQVSCRPDQVKLWITINEPLEAMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKA 65
D+V + T+NEP + + + + AAH++L H A
Sbjct: 141 YAEAVARALADRVPFFATLNEPWCSAFLGHWTGEHAP-GLRNLEAALRAAHHLLLGHGLA 199
Query: 66 YRLYEKKYK 74
Sbjct: 200 VEALRAAGA 208
>d1uwsa_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 489
Score = 33.7 bits (76), Expect = 0.001
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 7 CAHQVSCRPDQVKLWITINEP-LEAMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKA 65
A+ D V + T+NEP + GY A +N++++HA+A
Sbjct: 187 SAYIAWKFDDLVDEYSTMNEPNVVGGLGYVGVKSGFPPGYLSFELSRRAMYNIIQAHARA 246
Query: 66 YRLYEKKY 73
Y +
Sbjct: 247 YDGIKSVS 254
>d1gnxa_ c.1.8.4 (A:) Beta-glucosidase A {Streptomyces sp. [TaxId:
1931]}
Length = 464
Score = 33.6 bits (76), Expect = 0.001
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 7 CAHQVSCRPDQVKLWITINEP-LEAMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKA 65
A D+VK W T+NEP A GY +AP T AAH++ H A
Sbjct: 145 AAIAADALGDRVKTWTTLNEPWCSAFLGYGSGVHAPG--RTDPVAALRAAHHLNLGHGLA 202
Query: 66 YRLYEKKYKPSQKG 79
+ + +
Sbjct: 203 VQALRDRLPADAQC 216
>d1qvba_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Thermosphaera
aggregans [TaxId: 54254]}
Length = 481
Score = 31.3 bits (70), Expect = 0.007
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 7 CAHQVSCRPDQVKLWITINEP-LEAMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKA 65
A+ + +W T+NEP + QGY F + A NM+++HA+A
Sbjct: 189 AAYIAWKMGELPVMWSTMNEPNVVYEQGYMFVKGGFPPGYLSLEAADKARRNMIQAHARA 248
Query: 66 YRLYEK 71
Y ++
Sbjct: 249 YDNIKR 254
>d1qoxa_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus circulans, subsp.
alkalophilus [TaxId: 1397]}
Length = 449
Score = 30.9 bits (69), Expect = 0.010
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 15 PDQVKLWITINEP-LEAMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKKY 73
++K WIT NEP A +AP + +H++L +H +A L+ +
Sbjct: 154 GGKIKQWITFNEPWCMAFLSNYLGVHAPGNKDLQLA--IDVSHHLLVAHGRAVTLFRELG 211
Query: 74 KPSQ 77
+
Sbjct: 212 ISGE 215
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 64
Score = 21.8 bits (46), Expect = 8.4
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 28 LEAMQGYDFKTYAPYLSMTGVGGEYLAAHNMLRSHAKAYRLYEKK 72
L A+ + P + + + L N + SH + +R+ KK
Sbjct: 19 LAAVDHLGVERAVPKKILDLMNVDKLTREN-VASHLQKFRVALKK 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.418
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 299,280
Number of extensions: 11251
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 16
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)