BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3012
(272 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 307 bits (786), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 150/273 (54%), Positives = 205/273 (75%), Gaps = 6/273 (2%)
Query: 2 ILEKLKSFLLNEISGKSLRKWADIVLNLIQRKEL--DLEKEITFAFNNSPPPIEVHVP-I 58
+L++++ F+ + GK+++KW + + +IQRK++ D F +SPP +E H+
Sbjct: 710 LLQRMEEFI-GTVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRP 768
Query: 59 NSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHT 118
I+ F++L HP+EIARQLTLLE D +R+V+PSELVGSVWTK++K SPNL+K+++HT
Sbjct: 769 GHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHT 828
Query: 119 TNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRF 178
TN T W EK IVE EN +ER+A+++RIIE++ V Q+LNNFNGVL V SAM S+ VYRL
Sbjct: 829 TNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDH 888
Query: 179 TFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFL 238
TF+ +P+R +K+LE+A EL+ DH+KKY KLR+INPPC+PFFG+YLTNIL EEGNP+ L
Sbjct: 889 TFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL 948
Query: 239 P--DSKLINFTKRRKVAEIISEIQQYQTQIFFL 269
+LINF+KRRKVAEI EIQQYQ Q + L
Sbjct: 949 KRHGKELINFSKRRKVAEITGEIQQYQNQPYCL 981
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang.
pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang
Length = 847
Score = 306 bits (784), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 150/273 (54%), Positives = 205/273 (75%), Gaps = 6/273 (2%)
Query: 2 ILEKLKSFLLNEISGKSLRKWADIVLNLIQRKEL--DLEKEITFAFNNSPPPIEVHVP-I 58
+L++++ F+ + GK+++KW + + +IQRK++ D F +SPP +E H+
Sbjct: 513 LLQRMEEFI-GTVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRP 571
Query: 59 NSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHT 118
I+ F++L HP+EIARQLTLLE D +R+V+PSELVGSVWTK++K SPNL+K+++HT
Sbjct: 572 GHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHT 631
Query: 119 TNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRF 178
TN T W EK IVE EN +ER+A+++RIIE++ V Q+LNNFNGVL V SAM S+ VYRL
Sbjct: 632 TNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDH 691
Query: 179 TFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFL 238
TF+ +P+R +K+LE+A EL+ DH+KKY KLR+INPPC+PFFG+YLTNIL EEGNP+ L
Sbjct: 692 TFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL 751
Query: 239 P--DSKLINFTKRRKVAEIISEIQQYQTQIFFL 269
+LINF+KRRKVAEI EIQQYQ Q + L
Sbjct: 752 KRHGKELINFSKRRKVAEITGEIQQYQNQPYCL 784
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
Length = 852
Score = 306 bits (784), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 150/273 (54%), Positives = 205/273 (75%), Gaps = 6/273 (2%)
Query: 2 ILEKLKSFLLNEISGKSLRKWADIVLNLIQRKEL--DLEKEITFAFNNSPPPIEVHVP-I 58
+L++++ F+ + GK+++KW + + +IQRK++ D F +SPP +E H+
Sbjct: 513 LLQRMEEFI-GTVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRP 571
Query: 59 NSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHT 118
I+ F++L HP+EIARQLTLLE D +R+V+PSELVGSVWTK++K SPNL+K+++HT
Sbjct: 572 GHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHT 631
Query: 119 TNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRF 178
TN T W EK IVE EN +ER+A+++RIIE++ V Q+LNNFNGVL V SAM S+ VYRL
Sbjct: 632 TNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDH 691
Query: 179 TFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFL 238
TF+ +P+R +K+LE+A EL+ DH+KKY KLR+INPPC+PFFG+YLTNIL EEGNP+ L
Sbjct: 692 TFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL 751
Query: 239 P--DSKLINFTKRRKVAEIISEIQQYQTQIFFL 269
+LINF+KRRKVAEI EIQQYQ Q + L
Sbjct: 752 KRHGKELINFSKRRKVAEITGEIQQYQNQPYCL 784
>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless
(Rem-Cdc25) In The Absence Of Ras
Length = 490
Score = 305 bits (781), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 150/273 (54%), Positives = 205/273 (75%), Gaps = 6/273 (2%)
Query: 2 ILEKLKSFLLNEISGKSLRKWADIVLNLIQRKEL--DLEKEITFAFNNSPPPIEVHVP-I 58
+L++++ F+ + GK+++KW + + +IQRK++ D F +SPP +E H+
Sbjct: 151 LLQRMEEFI-GTVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRP 209
Query: 59 NSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHT 118
I+ F++L HP+EIARQLTLLE D +R+V+PSELVGSVWTK++K SPNL+K+++HT
Sbjct: 210 GHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHT 269
Query: 119 TNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRF 178
TN T W EK IVE EN +ER+A+++RIIE++ V Q+LNNFNGVL V SAM S+ VYRL
Sbjct: 270 TNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDH 329
Query: 179 TFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFL 238
TF+ +P+R +K+LE+A EL+ DH+KKY KLR+INPPC+PFFG+YLTNIL EEGNP+ L
Sbjct: 330 TFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL 389
Query: 239 P--DSKLINFTKRRKVAEIISEIQQYQTQIFFL 269
+LINF+KRRKVAEI EIQQYQ Q + L
Sbjct: 390 KRHGKELINFSKRRKVAEITGEIQQYQNQPYCL 422
>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVV|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVX|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 481
Score = 305 bits (781), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 150/273 (54%), Positives = 205/273 (75%), Gaps = 6/273 (2%)
Query: 2 ILEKLKSFLLNEISGKSLRKWADIVLNLIQRKEL--DLEKEITFAFNNSPPPIEVHVP-I 58
+L++++ F+ + GK+++KW + + +IQRK++ D F +SPP +E H+
Sbjct: 145 LLQRMEEFI-GTVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRP 203
Query: 59 NSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHT 118
I+ F++L HP+EIARQLTLLE D +R+V+PSELVGSVWTK++K SPNL+K+++HT
Sbjct: 204 GHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHT 263
Query: 119 TNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRF 178
TN T W EK IVE EN +ER+A+++RIIE++ V Q+LNNFNGVL V SAM S+ VYRL
Sbjct: 264 TNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDH 323
Query: 179 TFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFL 238
TF+ +P+R +K+LE+A EL+ DH+KKY KLR+INPPC+PFFG+YLTNIL EEGNP+ L
Sbjct: 324 TFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL 383
Query: 239 P--DSKLINFTKRRKVAEIISEIQQYQTQIFFL 269
+LINF+KRRKVAEI EIQQYQ Q + L
Sbjct: 384 KRHGKELINFSKRRKVAEITGEIQQYQNQPYCL 416
>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 484
Score = 305 bits (781), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 150/273 (54%), Positives = 205/273 (75%), Gaps = 6/273 (2%)
Query: 2 ILEKLKSFLLNEISGKSLRKWADIVLNLIQRKEL--DLEKEITFAFNNSPPPIEVHVP-I 58
+L++++ F+ + GK+++KW + + +IQRK++ D F +SPP +E H+
Sbjct: 145 LLQRMEEFI-GTVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRP 203
Query: 59 NSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHT 118
I+ F++L HP+EIARQLTLLE D +R+V+PSELVGSVWTK++K SPNL+K+++HT
Sbjct: 204 GHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHT 263
Query: 119 TNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRF 178
TN T W EK IVE EN +ER+A+++RIIE++ V Q+LNNFNGVL V SAM S+ VYRL
Sbjct: 264 TNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDH 323
Query: 179 TFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFL 238
TF+ +P+R +K+LE+A EL+ DH+KKY KLR+INPPC+PFFG+YLTNIL EEGNP+ L
Sbjct: 324 TFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL 383
Query: 239 P--DSKLINFTKRRKVAEIISEIQQYQTQIFFL 269
+LINF+KRRKVAEI EIQQYQ Q + L
Sbjct: 384 KRHGKELINFSKRRKVAEITGEIQQYQNQPYCL 416
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1
Length = 477
Score = 305 bits (780), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 150/273 (54%), Positives = 205/273 (75%), Gaps = 6/273 (2%)
Query: 2 ILEKLKSFLLNEISGKSLRKWADIVLNLIQRKEL--DLEKEITFAFNNSPPPIEVHVP-I 58
+L++++ F+ + GK+++KW + + +IQRK++ D F +SPP +E H+
Sbjct: 143 LLQRMEEFI-GTVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRP 201
Query: 59 NSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHT 118
I+ F++L HP+EIARQLTLLE D +R+V+PSELVGSVWTK++K SPNL+K+++HT
Sbjct: 202 GHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHT 261
Query: 119 TNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRF 178
TN T W EK IVE EN +ER+A+++RIIE++ V Q+LNNFNGVL V SAM S+ VYRL
Sbjct: 262 TNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDH 321
Query: 179 TFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFL 238
TF+ +P+R +K+LE+A EL+ DH+KKY KLR+INPPC+PFFG+YLTNIL EEGNP+ L
Sbjct: 322 TFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL 381
Query: 239 P--DSKLINFTKRRKVAEIISEIQQYQTQIFFL 269
+LINF+KRRKVAEI EIQQYQ Q + L
Sbjct: 382 KRHGKELINFSKRRKVAEITGEIQQYQNQPYCL 414
>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1
Length = 240
Score = 140 bits (354), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 123/202 (60%), Gaps = 3/202 (1%)
Query: 68 IAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEK 127
+ +EIA QLTLL+ F+S+ E G W K K E +P ++K KH + + ++
Sbjct: 3 LGSALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIAS 62
Query: 128 IIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRL 187
I+ E+ R + + + + + + + L+N+N VL +TS++ +A++RL+ T+ + +
Sbjct: 63 EIIRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQT 122
Query: 188 QKVLEDAREL--NGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDSKLIN 245
+ +L+ ++L + FK +E LRN +PPC+P+ GMYLT+++ IEEG P++ D L+N
Sbjct: 123 KSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEGTPNYTEDG-LVN 181
Query: 246 FTKRRKVAEIISEIQQYQTQIF 267
F+K R ++ II EI+Q+Q +
Sbjct: 182 FSKMRMISHIIREIRQFQQTTY 203
>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
pdb|3QXL|B Chain B, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
Length = 271
Score = 97.4 bits (241), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 99/175 (56%), Gaps = 3/175 (1%)
Query: 64 FNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTR 123
F++L P E A Q+TL++ F++++P EL W+KK K +PN++ + +
Sbjct: 26 FDVLKVTPEEFASQITLMDIPVFKAIQPEELASCGWSKKEKHSLAPNVVAFTRRFNQVSF 85
Query: 124 WLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQAL 183
W+ + I+ A+ R I++ +++ L +LNN + +++V SA+ SA ++RL T+ L
Sbjct: 86 WVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWALL 145
Query: 184 PTRLQKVLEDARELNG--DHFKKYQEKLRNIN-PPCIPFFGMYLTNILHIEEGNP 235
+ + E L D++K+ +E +R++ P IP+ G+YL ++++I+ P
Sbjct: 146 NRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGIYLLDLIYIDSAYP 200
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 103/222 (46%), Gaps = 6/222 (2%)
Query: 48 SPPPIEVHVPINSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEY 107
+P P + ++ F ++ + ++A Q+T +++ F V EL+ + + N +
Sbjct: 740 TPLPEQEGPTTGTVGTFELMSSK--DLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKT 797
Query: 108 SPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSA 167
+ NL ++ W+ + +R+ ++ + I++ ++ N N A+
Sbjct: 798 TANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMG 857
Query: 168 MGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNINPPCIPFFGMYLT 225
+ + AV RL T++ LP++ +K + L + + Y+ + PP IPF + +
Sbjct: 858 LSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIK 917
Query: 226 NILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQIF 267
++ EGN F+ + L+NF K R +A ++ Y++Q F
Sbjct: 918 DMTFTHEGNKTFIDN--LVNFEKMRMIANTARTVRYYRSQPF 957
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 103/222 (46%), Gaps = 6/222 (2%)
Query: 48 SPPPIEVHVPINSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEY 107
+P P + ++ F ++ + ++A Q+T +++ F V EL+ + + N +
Sbjct: 740 TPLPEQEGPTTGTVGTFELMSSK--DLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKT 797
Query: 108 SPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSA 167
+ NL ++ W+ + +R+ ++ + I++ ++ N N A+
Sbjct: 798 TANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMG 857
Query: 168 MGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNINPPCIPFFGMYLT 225
+ + AV RL T++ LP++ +K + L + + Y+ + PP IPF + +
Sbjct: 858 LSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIK 917
Query: 226 NILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQIF 267
++ EGN F+ + L+NF K R +A ++ Y++Q F
Sbjct: 918 DMTFTHEGNKTFIDN--LVNFEKMRMIANTARTVRYYRSQPF 957
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 103/222 (46%), Gaps = 6/222 (2%)
Query: 48 SPPPIEVHVPINSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEY 107
+P P + ++ F ++ + ++A Q+T +++ F V EL+ + + N +
Sbjct: 435 TPLPEQEGPTTGTVGTFELMSSK--DLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKT 492
Query: 108 SPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSA 167
+ NL ++ W+ + +R+ ++ + I++ ++ N N A+
Sbjct: 493 TANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMG 552
Query: 168 MGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNINPPCIPFFGMYLT 225
+ + AV RL T++ LP++ +K + L + + Y+ + PP IPF + +
Sbjct: 553 LSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIK 612
Query: 226 NILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQIF 267
++ EGN F+ + L+NF K R +A ++ Y++Q F
Sbjct: 613 DMTFTHEGNKTFIDN--LVNFEKMRMIANTARTVRYYRSQPF 652
>pdb|1L9U|H Chain H, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|Q Chain Q, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
Length = 332
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Query: 134 NFDERLAIMTRIIEMMIVLQKLNNFNGV-------LAVTSAMGSAAVYRLRFTFQALPTR 186
+E + + ++ E M ++KL+ G+ + +G+A V + ++LP
Sbjct: 19 TLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARVEEVDGKLKSLPKE 78
Query: 187 LQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINF 246
L++ L ARE + LR + + G L+ + I+EGN + + +
Sbjct: 79 LKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEY 138
Query: 247 TKR 249
+R
Sbjct: 139 KRR 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,651,406
Number of Sequences: 62578
Number of extensions: 308315
Number of successful extensions: 730
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 698
Number of HSP's gapped (non-prelim): 14
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)