Query psy3012
Match_columns 272
No_of_seqs 206 out of 1148
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 23:14:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00147 RasGEF Guanine nucl 100.0 6E-54 1.3E-58 377.7 24.3 206 66-272 1-210 (242)
2 cd00155 RasGEF Guanine nucleot 100.0 8E-54 1.7E-58 375.6 23.8 205 66-271 1-210 (237)
3 PF00617 RasGEF: RasGEF domain 100.0 3.3E-49 7.2E-54 333.9 17.6 184 67-251 1-188 (188)
4 KOG3629|consensus 100.0 1E-43 2.2E-48 328.0 20.1 210 61-271 206-444 (728)
5 KOG3542|consensus 100.0 7E-38 1.5E-42 295.7 14.6 204 62-268 860-1067(1283)
6 KOG2378|consensus 100.0 3.5E-35 7.5E-40 267.5 14.5 202 65-268 332-536 (573)
7 KOG3541|consensus 100.0 2.4E-27 5.3E-32 214.1 15.8 202 62-265 201-426 (477)
8 KOG3417|consensus 99.9 2.6E-26 5.5E-31 233.3 11.3 206 62-267 207-419 (840)
9 KOG3417|consensus 99.7 3.8E-17 8.2E-22 166.5 10.5 194 70-271 609-806 (840)
10 PF03745 DUF309: Domain of unk 34.5 1.5E+02 0.0032 20.2 5.8 54 110-163 2-60 (62)
11 KOG3541|consensus 33.5 25 0.00054 33.4 1.6 67 113-179 388-457 (477)
12 KOG0584|consensus 27.6 22 0.00047 35.5 0.2 82 155-238 85-167 (632)
13 PF01371 Trp_repressor: Trp re 21.4 3.4E+02 0.0073 19.9 6.5 57 134-192 28-85 (87)
No 1
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases.
Probab=100.00 E-value=6e-54 Score=377.69 Aligned_cols=206 Identities=41% Similarity=0.786 Sum_probs=198.0
Q ss_pred ccccCHHHHHHHHHHHHHHHhcCCChhhhhhhhcccCCCCCCCh-hHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy3012 66 ILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSP-NLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTR 144 (272)
Q Consensus 66 ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~~~p-ni~~~i~~~n~ls~wv~~~Il~~~~~~~Ra~~i~~ 144 (272)
+++++|.|||+|||++|+++|++|+|.||++..|++.+....+| ||.+++++||.++.||+.+||.++++++|++++++
T Consensus 1 ~l~~~~~eiA~QlTl~d~~~f~~I~~~El~~~~~~~~~~~~~~p~~i~~~~~~~n~is~wv~~~Il~~~~~~~R~~~i~~ 80 (242)
T smart00147 1 LLLLDPKELAEQLTLLDFELFRKIDPSELLGSVWGKRSKKSPSPLNLERFIERFNEVSNWVATEILKQTTPKDRAELLSK 80 (242)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999887777788 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhc--chhhHHHHHHHHhcCC-CCCccchh
Q psy3012 145 IIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNIN-PPCIPFFG 221 (272)
Q Consensus 145 ~I~iA~~~~~l~Nf~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l--~~~n~~~yr~~l~~~~-~pcIP~lg 221 (272)
||+||.+|.++|||+|++||++||++++|.||+.||+.|+++.++.+++|+++ +++||++||+.++++. +|||||+|
T Consensus 81 fI~ia~~l~~l~Nfns~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~L~~l~s~~~n~~~yR~~l~~~~~~p~IP~lg 160 (242)
T smart00147 81 FIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEKLPSKYKKLFEELEELLSPERNFKNYREALSSCNLPPCVPFLG 160 (242)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCChHHhhhHHHHHHCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCccchH
Confidence 99999999999999999999999999999999999999999999999999998 5799999999999988 99999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHhhcCCCCCcCC
Q psy3012 222 MYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQIFFLIQS 272 (272)
Q Consensus 222 ~~L~DL~~i~eg~~~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~~ 272 (272)
++|+|++++++|+|++.+ +|+|||.|+++++++|.+++.||+.+|+|.|.
T Consensus 161 ~~l~dl~~~~~~~~~~~~-~~~iNf~k~~~i~~~i~~~~~~Q~~~y~~~~~ 210 (242)
T smart00147 161 VLLKDLTFIDEGNPDFLE-NGLVNFEKRRKIAEILREIRQLQSQPYNLRPN 210 (242)
T ss_pred HHHHHHHHHHccCccccc-CCcccHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 999999999999999986 49999999999999999999999999999873
No 2
>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases. Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors.
Probab=100.00 E-value=8e-54 Score=375.57 Aligned_cols=205 Identities=41% Similarity=0.796 Sum_probs=196.5
Q ss_pred ccccCHHHHHHHHHHHHHHHhcCCChhhhhhhhcccCCCC-CCChhHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy3012 66 ILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKA-EYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTR 144 (272)
Q Consensus 66 ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~-~~~pni~~~i~~~n~ls~wv~~~Il~~~~~~~Ra~~i~~ 144 (272)
++++||.|||+|||++|+++|++|+|.|+++..|.+.... +.+|+|..++++||.++.||+.+||.++++++|++++++
T Consensus 1 ~l~~d~~eiA~QlTl~~~~lf~~I~~~El~~~~~~~~~~~~~~~p~i~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~ 80 (237)
T cd00155 1 FLSLDPKELAEQLTLLDFELFRKIEPFELLGSLWSKKDKNIHLSPNLERFIERFNNLSNWVASEILLCTNPKKRARLLSK 80 (237)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4789999999999999999999999999999999887655 379999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhc--chhhHHHHHHHHhcC--CCCCccch
Q psy3012 145 IIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNI--NPPCIPFF 220 (272)
Q Consensus 145 ~I~iA~~~~~l~Nf~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l--~~~n~~~yr~~l~~~--~~pcIP~l 220 (272)
||+||.+|+++|||+|++||++||++++|.||++||+.++++.++.++++..+ +++||+.||+.++++ .+|||||+
T Consensus 81 ~I~ia~~l~~l~Nfns~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yr~~l~~~~~~~p~IP~l 160 (237)
T cd00155 81 FIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEVLSSKLKKLFEELEELVDPSRNFKNYRKLLKSVGPNPPCVPFL 160 (237)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCCccchhHHHHHHHCCHHHHHHHHHHHHHhCcHhhHHHHHHHHHhcCCCCCCeeeh
Confidence 99999999999999999999999999999999999999999999999999988 568999999999998 89999999
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHhhcCCCCCcC
Q psy3012 221 GMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQIFFLIQ 271 (272)
Q Consensus 221 g~~L~DL~~i~eg~~~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~ 271 (272)
|+||+||+++++|+|++++ +++|||.|+++++++|.++.+||+.||.|.|
T Consensus 161 g~~l~dl~~~~e~~~~~~~-~~~iN~~K~~~i~~~i~~~~~~Q~~~Y~~~~ 210 (237)
T cd00155 161 GVYLKDLTFLHEGNPDFLE-GNLVNFEKRRKIAEILREIRQLQSNSYELNR 210 (237)
T ss_pred hHHHHHHHHHHccCCccCc-CCCccHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 9999999999999999986 4999999999999999999999999999986
No 3
>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP []. The balance between the GTP bound (active) and GDP bound (inactive) states is regulated by the opposite action of proteins activating the GTPase activity and that of proteins which promote the loss of bound GDP and the uptake of fresh GTP [, ]. The latter proteins are known as guanine-nucleotide dissociation stimulators (GDSs) (or also as guanine-nucleotide releasing (or exchange) factors (GRFs)). Proteins that act as GDS can be classified into at least two families, on the basis of sequence similarities, the CDC24 family (see IPR001331 from INTERPRO) and the CDC25 family. The size of the proteins of the CDC25 family range from 309 residues (LTE1) to 1596 residues (sos). The sequence similarity shared by all these proteins is limited to a region of about 250 amino acids generally located in their C-terminal section (currently the only exceptions are sos and ralGDS where this domain makes up the central part of the protein). This domain has been shown, in CDC25 an SCD25, to be essential for the activity of these proteins.; GO: 0005085 guanyl-nucleotide exchange factor activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IJE_S 3T6G_A 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=100.00 E-value=3.3e-49 Score=333.89 Aligned_cols=184 Identities=43% Similarity=0.785 Sum_probs=168.7
Q ss_pred cccCHHHHHHHHHHHHHHHhcCCChhhhhhhhcccCCCCC-CChhHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy3012 67 LIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAE-YSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRI 145 (272)
Q Consensus 67 l~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~-~~pni~~~i~~~n~ls~wv~~~Il~~~~~~~Ra~~i~~~ 145 (272)
++++|.+||+|||++|+++|++|+|.|++...|.+.+..+ .+|++.+++++||.+++||+.+||.++++++|++++++|
T Consensus 1 ~~~~~~~iA~qlt~~~~~lf~~I~~~e~~~~~~~~~~~~~~~~~~i~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~~ 80 (188)
T PF00617_consen 1 LDIDPEEIARQLTLLDSELFRKIKPSELLYSVWSKSDKKENQSPNINKLIDRFNKLSNWVISEILSQPDPEERAKIIEKF 80 (188)
T ss_dssp -CS-HHHHHHHHHHHHHHHHHTSSHHHHHGGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCCccChhHHHHHHHhhhHHHHHHHHhhccccHHHHHHHHHHH
Confidence 5789999999999999999999999999999998754333 489999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCChhHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhc--chhhHHHHHHHHhcCCC-CCccchhH
Q psy3012 146 IEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNINP-PCIPFFGM 222 (272)
Q Consensus 146 I~iA~~~~~l~Nf~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l--~~~n~~~yr~~l~~~~~-pcIP~lg~ 222 (272)
|+||.+|+++|||+|++||++||++++|.||++||+.++++.++.+++++.+ +++||++||++++++.+ |||||+|+
T Consensus 81 I~va~~l~~l~Nf~s~~aI~~~L~s~~i~rL~~tw~~l~~~~~~~~~~l~~l~~~~~~~~~yr~~~~~~~~~~~IP~lg~ 160 (188)
T PF00617_consen 81 IQVAKKLYELGNFNSLMAILSALNSSSIQRLKKTWKSLSKKSKKTFEELESLFSPSNNYKNYREALKKCNPQPCIPFLGI 160 (188)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHTSHHHHT-HHHHHTSHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTSTSSSSB--HHH
T ss_pred HhHHHHHHHhcCchHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHhhcccchhhHHHHHhhcccccCceecccHH
Confidence 9999999999999999999999999999999999999999999999999988 57899999999998887 99999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCcccHHHHHH
Q psy3012 223 YLTNILHIEEGNPDFLPDSKLINFTKRRK 251 (272)
Q Consensus 223 ~L~DL~~i~eg~~~~~~~~~lINf~K~r~ 251 (272)
+++|++++++|+|+++++ ++|||.|+|+
T Consensus 161 ~l~dl~~~~~~~~~~~~~-~liN~~K~r~ 188 (188)
T PF00617_consen 161 FLKDLIFIEEGNPDFIDD-GLINFEKCRK 188 (188)
T ss_dssp HHHHHHHHHHHS-SECTT-TCEEHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCC-ccCCcccccC
Confidence 999999999999999974 7999999986
No 4
>KOG3629|consensus
Probab=100.00 E-value=1e-43 Score=328.00 Aligned_cols=210 Identities=22% Similarity=0.414 Sum_probs=193.6
Q ss_pred CCcccccccCHHHHHHHHHHHHHHHhcCCChhhhhhhhcccCCCC-CCChhHHHHHHHHHHHHHHHHHHhhCCC-CHHHH
Q psy3012 61 IDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKA-EYSPNLIKIMKHTTNFTRWLEKIIVEAE-NFDER 138 (272)
Q Consensus 61 ~~~~~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~-~~~pni~~~i~~~n~ls~wv~~~Il~~~-~~~~R 138 (272)
++.+++..+..+.||+|||++|+++|+++-|++|+|++|+++|+. +.+|.|.+.|.+||.++..|+++||..+ .+++|
T Consensus 206 ~~~~dv~~f~~d~iAEQLT~~DA~LFk~l~phqClGcvWs~Rd~~ghl~ptvrATi~QFN~vs~~Vvssilg~~lrp~qR 285 (728)
T KOG3629|consen 206 NKMFDVGKFNCDQIAEQLTFWDAALFKELLPHQCLGCVWSKRDTAGHLVPTVRATIEQFNSVSQRVVSSILGPDLRPEQR 285 (728)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHhhhHhcccceeccCCCcccccchHHHHHHHHHHHHHHHHHHhhCCCCCcHHH
Confidence 367889999999999999999999999999999999999998864 5699999999999999999999999754 78999
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhc--chhhHHHHHHHHhcC----
Q psy3012 139 LAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNI---- 212 (272)
Q Consensus 139 a~~i~~~I~iA~~~~~l~Nf~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l--~~~n~~~yr~~l~~~---- 212 (272)
|++|+|||+||.+|+-++||.|+.|++++|++.+|+||+.+|..++.+....|+++.++ .++|+.+-|+.|-+.
T Consensus 286 AkiieKWI~iA~E~rllknfssl~avvsalqs~pihrlk~aw~~v~rdsls~f~els~ifse~~n~~~sReLL~qeGtsk 365 (728)
T KOG3629|consen 286 AKIIEKWIDIARECRLLKNFSSLKAVVSALQSEPIHRLKSAWNSVPRDSISQFRELSSIFSEDGNQGNSRELLIQEGTSK 365 (728)
T ss_pred HHHHHHHHHHHHHHHHHhhhccceeeeccccccHHHHHHhhhccCchhHHHHHHHHHhhcccccCCcchhHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999888 357777778776421
Q ss_pred -------------------CCCCccchhHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHhhc--CCCCCcC
Q psy3012 213 -------------------NPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQT--QIFFLIQ 271 (272)
Q Consensus 213 -------------------~~pcIP~lg~~L~DL~~i~eg~~~~~~~~~lINf~K~r~i~~ii~~i~~~Q~--~~Y~~~~ 271 (272)
....|||||+||+||++++++.+|+.++ |+|||+|+|+.++++.+++.+|+ ..|++.|
T Consensus 366 sspLe~s~k~a~~r~qr~~~qGtVPyLGtFLtDLvMlDtA~~d~~e~-glINFeKRRkEFeVla~lrllQsaar~Ynl~p 444 (728)
T KOG3629|consen 366 SSPLEASPKRAHARWQRQDKQGTVPYLGTFLTDLVMLDTAMNDYPEE-GLINFEKRRKEFEVLAKLRLLQSAARHYNLHP 444 (728)
T ss_pred cCCCCcchhhhhhhhhhccCCcccchHHHHHHHHHHHhhcccCCccc-ccchHhhhhHHHHHHHHHHHHHHHhhccCCCc
Confidence 1357999999999999999999999985 99999999999999999999999 6999987
No 5
>KOG3542|consensus
Probab=100.00 E-value=7e-38 Score=295.72 Aligned_cols=204 Identities=27% Similarity=0.497 Sum_probs=191.1
Q ss_pred CcccccccCHHHHHHHHHHHHHHHhcCCChhhhhhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy3012 62 DEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAI 141 (272)
Q Consensus 62 ~~~~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~~~pni~~~i~~~n~ls~wv~~~Il~~~~~~~Ra~~ 141 (272)
....++.++..|+|.|||+-|+++|++|.|.|++...+. -+.+..+|++.++-+-||+-+.||+++|+.+.+..+|+++
T Consensus 860 sQ~slLqLst~eVAtQLsmrdF~lFrnIEPTEyiDdLFK-L~SKtg~~~LkrFE~l~NqEtfWVAsEIltE~nqlKRmKi 938 (1283)
T KOG3542|consen 860 SQTSLLQLSTQEVATQLSMRDFSLFRNIEPTEYIDDLFK-LDSKTGSPKLKRFEQLFNQETFWVASEILTERNQLKRMKI 938 (1283)
T ss_pred HHHhHhhhHHHHHHHHhhhhhhhhHhcCChHHHHHHHHh-hccccCCccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999998774 3445668999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhc--chhhHHHHHHHHhc--CCCCCc
Q psy3012 142 MTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRN--INPPCI 217 (272)
Q Consensus 142 i~~~I~iA~~~~~l~Nf~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l--~~~n~~~yr~~l~~--~~~pcI 217 (272)
|++||+||.+|++++||||++||++||+-++|.||+.||+++|.++.+.+++++.| +++|..+||+.|.+ ..||.|
T Consensus 939 IKhFIKiAlhCReckNFNSMFAIiSGLnla~VaRLr~tWEklpsKYek~lqdlqdlfDPSRNMaKYRn~L~sq~~qPPii 1018 (1283)
T KOG3542|consen 939 IKHFIKIALHCRECKNFNSMFAIISGLNLAAVARLRSTWEKLPSKYEKMLQDLQDLFDPSRNMAKYRNHLASQAQQPPII 1018 (1283)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHhcCchHHHHHHhhhHhhccHHHHHHHHHHHHhhCchhhHHHHHHHHHhhccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999 67999999999975 479999
Q ss_pred cchhHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHhhcCCCC
Q psy3012 218 PFFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQIFF 268 (272)
Q Consensus 218 P~lg~~L~DL~~i~eg~~~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~ 268 (272)
|.+.+.-+||||++|||..+. +|||||+|.|+|++-|+.+.+.-+.+|.
T Consensus 1019 PlfPViKKDlTFlHeGNdskv--dgLvNFEKLRmIaKeIR~V~rmsSanmd 1067 (1283)
T KOG3542|consen 1019 PLFPVIKKDLTFLHEGNDSKV--DGLVNFEKLRMIAKEIRGVMRMSSANMD 1067 (1283)
T ss_pred ccchheeccceeeecCCchhh--hccccHHHHHHHHHHHHHHHhhccCCCC
Confidence 999999999999999999998 4899999999999999999998887775
No 6
>KOG2378|consensus
Probab=100.00 E-value=3.5e-35 Score=267.46 Aligned_cols=202 Identities=23% Similarity=0.464 Sum_probs=190.5
Q ss_pred cccccCHHHHHHHHHHHHHHHhcCCChhhhhhhhcccC-CCCCCChhHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy3012 65 NILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKK-NKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMT 143 (272)
Q Consensus 65 ~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~-~~~~~~pni~~~i~~~n~ls~wv~~~Il~~~~~~~Ra~~i~ 143 (272)
.|.-+++.++|.|||++|+++|+.|+-.|++.++.+.. ....++.|+..+..+||.+..||+++|+.+..+.+|+++++
T Consensus 332 ~l~lv~s~dlA~qLt~fdw~Lfnsih~~ElI~y~i~~q~~~~~~tanleLl~~R~neVq~wv~tei~lc~ql~kr~qllk 411 (573)
T KOG2378|consen 332 ILHLVSSKDLAHQLTLFDWSLFNSIHENELIHYVIGGQIPCDRNTANLELLLRRFNEVQHWVATEILLCQQLGKRCQLLK 411 (573)
T ss_pred eeeeccHHHHHHHHHHHHHHHHhhhhHhHhhHhhhcccCCCCccchhHHHHHHHHhhchhhhhchhhhhcchhHHHHHHH
Confidence 45568999999999999999999999999999988743 33345779999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhc--chhhHHHHHHHHhcCCCCCccchh
Q psy3012 144 RIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNINPPCIPFFG 221 (272)
Q Consensus 144 ~~I~iA~~~~~l~Nf~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l--~~~n~~~yr~~l~~~~~pcIP~lg 221 (272)
+||++|..|++..|.++++||+.||.+.+|.||..||+.+|.+.++.++++..+ +..|++.||...++.++|.|||+.
T Consensus 412 kfiKiaal~ke~~~l~sffAV~~GL~~~avSrl~~tweklP~k~kk~~s~~enl~dP~~nhr~yR~l~~km~pp~ipf~P 491 (573)
T KOG2378|consen 412 KFIKIAALCKEGENLNSFFAVVMGLSNRAVSRLDLTWEKLPYKFKKLFSELENLLDPCRNHRTYRLLSSKMSPPYIPFMP 491 (573)
T ss_pred HHHHHHHHHHhhccccchHHHhhcchhHHHHhhhcccccCchHHHhHHHHHHhcCCchhhhHHHHHHHHhcCCCCCCccc
Confidence 999999999999999999999999999999999999999999999999999998 679999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHhhcCCCC
Q psy3012 222 MYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQIFF 268 (272)
Q Consensus 222 ~~L~DL~~i~eg~~~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~ 268 (272)
..|+|++|+++||..++ +|+|||+|+++++++++.+++|.+.|++
T Consensus 492 lllkD~tf~heGnkt~v--~glVNfEKmhmiA~~~Rt~r~cRS~p~~ 536 (573)
T KOG2378|consen 492 LLLKDLTFIHEGNKTFV--DGLVNFEKMHMIAKTARTLRHCRSQPLN 536 (573)
T ss_pred hhhhhceeeccchHHHH--hcchhHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999 4899999999999999999999999887
No 7
>KOG3541|consensus
Probab=99.95 E-value=2.4e-27 Score=214.07 Aligned_cols=202 Identities=21% Similarity=0.322 Sum_probs=172.7
Q ss_pred CcccccccCHHHHHHHHHHHHHHHhcCCChhhhhhhhcccCC-------------CCCCChhHHHHHHHHHHHHHHHHHH
Q psy3012 62 DEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKN-------------KAEYSPNLIKIMKHTTNFTRWLEKI 128 (272)
Q Consensus 62 ~~~~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~-------------~~~~~pni~~~i~~~n~ls~wv~~~ 128 (272)
+++--.+.++.++|+|||.++...+..|.+.|+...+-+.+. +....-.+..++.+||+++..++++
T Consensus 201 ~~ll~~c~dal~laqqlt~Ie~~rls~i~~EelvqiL~sdp~sei~~~~~~~l~~k~~~~ysie~y~~wfn~Lsa~~Ate 280 (477)
T KOG3541|consen 201 ETLLPKCVDALDLAQQLTHIESCRLSLIPHEELVQILDSDPESEILESLVGLLAMKFPYDYSIERYMSWFNHLSALCATE 280 (477)
T ss_pred hhhhhccccHHHHHHHHHHHHHHHHhccCHHHHHHHHhcCcHHHHHHHhhhhhhccCcccccHHHHHHHHHHHHHHHHHH
Confidence 445556789999999999999999999999998765433221 1112346889999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhcchhhHHHHHHH
Q psy3012 129 IVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEK 208 (272)
Q Consensus 129 Il~~~~~~~Ra~~i~~~I~iA~~~~~l~Nf~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~n~~~yr~~ 208 (272)
||.....+.|++|+++||++|.+|..++||||+|||+.|++-++|.|||+||..|.......++.-.+ +..||-+||.+
T Consensus 281 vlk~~kk~~rsamlef~iD~arec~nignfnSmmai~~~lnL~avarlkktw~kv~taK~e~lehqmd-ps~nflsyr~t 359 (477)
T KOG3541|consen 281 VLKAAKKQTRSAMLEFLIDLARECFNIGNFNSMMAIGPGLNLNAVARLKKTWIKVRTAKFEALEHQMD-PSSNFLSYRLT 359 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhcCC-chhhhHHHHHH
Confidence 99988899999999999999999999999999999999999999999999999987655555543211 67899999998
Q ss_pred HhcC-----------CCCCccchhHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHhhcC
Q psy3012 209 LRNI-----------NPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQ 265 (272)
Q Consensus 209 l~~~-----------~~pcIP~lg~~L~DL~~i~eg~~~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~ 265 (272)
++.+ ....|||+..+|+|+.++.++.+.++++ |.|||.|+..+..-++++..+|.+
T Consensus 360 ~Kaa~wrs~sang~~ekaviPff~l~Lkdl~~i~~~h~~~l~N-ghinf~k~~~i~~qlr~v~~W~~v 426 (477)
T KOG3541|consen 360 DKAAKWRSPSANGAPEKAVIPFFTLFLKDLLDISARHRLFLPN-GHINFLKFVGIEGQLRTVELWSGV 426 (477)
T ss_pred HHHHhhcCccccCCCccccccchhhhHHHHHHHHhhhcccCCC-chhHHHHHHhHHhhhhhhhhhhcc
Confidence 8742 1355999999999999999999999985 999999999999999999999985
No 8
>KOG3417|consensus
Probab=99.93 E-value=2.6e-26 Score=233.26 Aligned_cols=206 Identities=33% Similarity=0.545 Sum_probs=190.4
Q ss_pred CcccccccCHHHHHHHHHH-HHHHHhcCCChhhhhhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy3012 62 DEFNILIAHPVEIARQLTL-LEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLA 140 (272)
Q Consensus 62 ~~~~ll~~~~~eiA~QLTl-~d~~lf~~I~~~E~l~~~w~k~~~~~~~pni~~~i~~~n~ls~wv~~~Il~~~~~~~Ra~ 140 (272)
..+++...+|.++|+|+|. +|...|+.|.+.|++++.|.+.++...+||+..++.++|.++.||..+|+..+.++.|+.
T Consensus 207 ~~f~~~~~~~~e~~~~lt~lle~~~~~~iq~~e~~~~~~~~~~~~~~~P~~~~~~~~~~~~s~wv~~~il~~e~l~~r~~ 286 (840)
T KOG3417|consen 207 RIFDFLRLTPRELSEQLTSLLESPDFRKIQPFELLSQSWLKKDKKINSPNIESSTSRFNHLSSWVEQEILNAEQLEERAE 286 (840)
T ss_pred eeeeccccchhhhccccccccccccccccCHHHHHHhhhhhcccccCCCchhhhhhcccchHHHHHHHHhccccHHHHHH
Confidence 6789999999999999996 999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhc--chhhHHHHHHHHhcCCC-CCc
Q psy3012 141 IMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNINP-PCI 217 (272)
Q Consensus 141 ~i~~~I~iA~~~~~l~Nf~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l--~~~n~~~yr~~l~~~~~-pcI 217 (272)
++-++|++|.+..+++|||+++++++|+++++++||++||+.++.+..+.+..+..+ ..+||++||..+.+++. |||
T Consensus 287 ~~~~~L~~a~~~~el~n~~~~~~~v~~~~~s~i~~L~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~yr~~l~~~~~~~~i 366 (840)
T KOG3417|consen 287 VILHFLEVAAKLSELNNLNSLMEVVSGLQSSPISRLKKTGSYLSSEIKKKLILLTELTSLLDNVQNYRRYLQSCNISPCI 366 (840)
T ss_pred hhHHHHHHhhhhhhccccccHHHHHhccccchhhhhhhhhccccccchhhhhhHHHHhhcchHHHHHHHHhhhcccCccc
Confidence 999999999999999999999999999999999999999999998554544444443 45699999999999988 999
Q ss_pred cchhHHHHH-HHHHHhcCCCCCC--CCCcccHHHHHHHHHHHHHHHHhhcCCC
Q psy3012 218 PFFGMYLTN-ILHIEEGNPDFLP--DSKLINFTKRRKVAEIISEIQQYQTQIF 267 (272)
Q Consensus 218 P~lg~~L~D-L~~i~eg~~~~~~--~~~lINf~K~r~i~~ii~~i~~~Q~~~Y 267 (272)
|++|+++.| +..+++++|+... +...++|.|+..+++++.+++.+|+..|
T Consensus 367 p~~~~~l~d~~~~l~~~~p~~~~~~~~~e~~~~~~~~~~~i~~elq~l~~~~~ 419 (840)
T KOG3417|consen 367 PILGVYLLDSLVKLNEALPTKLLRIGERELSFSKLKVLLEIISELQDLQNKEL 419 (840)
T ss_pred cccccccHHHHHhhhhcCCccccccccccccchhhhHHHHHHHHHHHHhcccc
Confidence 999999999 9999999999874 2348999999999999999999999765
No 9
>KOG3417|consensus
Probab=99.70 E-value=3.8e-17 Score=166.48 Aligned_cols=194 Identities=22% Similarity=0.366 Sum_probs=158.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCChhhhhhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy3012 70 HPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMM 149 (272)
Q Consensus 70 ~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~~~pni~~~i~~~n~ls~wv~~~Il~~~~~~~Ra~~i~~~I~iA 149 (272)
...+++.++|+++...+-.+.-.+-. .|.+.......++-..+...++..+.|+...|..+.....| ++.++
T Consensus 609 ~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~s------~~~~~ 680 (840)
T KOG3417|consen 609 KSAEIACQLTLLDAILTMEICIPRSL--LWAKVQNEEKSKKDLAFTETFNLVSFWSSTIILTQQPAKRS------FIHVA 680 (840)
T ss_pred hHHHHHhhhhhhhhHhhhchhhhhHH--HHhhhhhcccccchHHHHHHHhhhhhhhHHhhhccccccch------hHHHH
Confidence 66778888898888777666554444 34444445556778889999999999999888877766666 99999
Q ss_pred HHHhhcCChhHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhc--chhh-HHHHHHHHhcCCCCCccchhHHHHH
Q psy3012 150 IVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDH-FKKYQEKLRNINPPCIPFFGMYLTN 226 (272)
Q Consensus 150 ~~~~~l~Nf~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l--~~~n-~~~yr~~l~~~~~pcIP~lg~~L~D 226 (272)
++|..+.||.+++++.++|.+++++|+..+|.....+....+.....+ ...| +..||..+....+|||||+|++|+|
T Consensus 681 ~~~~~~~~~~~l~~~~s~l~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~cvP~~~~~l~d 760 (840)
T KOG3417|consen 681 KFCKIMKNFRTLMNINSALASSPIHRSTPLWRLEWPKDIREFSALSPLVIDKSNSSTYRRALLSVPEPPCVPFLGVILQD 760 (840)
T ss_pred hhhhhhCchhhhhHHHHHhccchhhhcchhhcccchhhHHHhhccccchhcccccHHHHHHHhcCCCCCCcCceeEEeec
Confidence 999999999999999999999999999999999988887777766655 2344 4445555556889999999999999
Q ss_pred HHHHHhcCCCCCCC-CCcccHHHHHHHHHHHHHHHHhhcCCCCCcC
Q psy3012 227 ILHIEEGNPDFLPD-SKLINFTKRRKVAEIISEIQQYQTQIFFLIQ 271 (272)
Q Consensus 227 L~~i~eg~~~~~~~-~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~ 271 (272)
|+|.++||||++++ ...+||.|+..+..+++.++.+|-..|.+.+
T Consensus 761 ltf~~~gnpd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (840)
T KOG3417|consen 761 LTFVHTGNPDYLDSVVNHGKFDKRTNIKDIVQEVQKFQYVGYKVNP 806 (840)
T ss_pred ceeecCCCCCccccccchhHHHHHHHHHHHHHHHHHhcccccccCc
Confidence 99999999998864 4778888888899999999999987777654
No 10
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.55 E-value=1.5e+02 Score=20.16 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHHHHHHh--hcCChhHHHH
Q psy3012 110 NLIKIMKHTTNFTRWLEKIIVEA---ENFDERLAIMTRIIEMMIVLQ--KLNNFNGVLA 163 (272)
Q Consensus 110 ni~~~i~~~n~ls~wv~~~Il~~---~~~~~Ra~~i~~~I~iA~~~~--~l~Nf~s~~a 163 (272)
.+...+..||.=-.|=++++|.. .....+...++-+|++|-.+. ..+|..+...
T Consensus 2 ~~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~ 60 (62)
T PF03745_consen 2 ALEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARR 60 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHH
T ss_pred HHHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45677888888888989998853 223348899999999998774 6788776544
No 11
>KOG3541|consensus
Probab=33.50 E-value=25 Score=33.40 Aligned_cols=67 Identities=13% Similarity=0.246 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHH---HhhCCCCHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHhhCchhhhhhHHH
Q psy3012 113 KIMKHTTNFTRWLEK---IIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFT 179 (272)
Q Consensus 113 ~~i~~~n~ls~wv~~---~Il~~~~~~~Ra~~i~~~I~iA~~~~~l~Nf~s~~aI~s~L~s~~I~RLk~t 179 (272)
.+..........+.. .++..-.+..|.+-++.|-.|+.-|.+..|+++..+|...+..+++.|++-+
T Consensus 388 dl~~i~~~h~~~l~Nghinf~k~~~i~~qlr~v~~W~~v~c~fek~p~v~sylliaevlse~alm~~sfe 457 (477)
T KOG3541|consen 388 DLLDISARHRLFLPNGHINFLKFVGIEGQLRTVELWSGVACPFEKVPNVNSYLLIAEVLSEPALMRASFE 457 (477)
T ss_pred HHHHHHhhhcccCCCchhHHHHHHhHHhhhhhhhhhhcccchHhhCchHHhHHhhhhhcccchhhhheec
Confidence 333333333344444 3444456788999999999999999999999999999999999999887654
No 12
>KOG0584|consensus
Probab=27.63 E-value=22 Score=35.50 Aligned_cols=82 Identities=11% Similarity=0.277 Sum_probs=57.3
Q ss_pred cCChhHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhcchhhHHHHHHHHhcCCCCCcc-chhHHHHHHHHHHhc
Q psy3012 155 LNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIP-FFGMYLTNILHIEEG 233 (272)
Q Consensus 155 l~Nf~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~n~~~yr~~l~~~~~pcIP-~lg~~L~DL~~i~eg 233 (272)
+.-|.+=.+.+.+|+|+.|-|+-..|.....+......+|- +.+..+.||...+..+.-.|= |=--+|+-|.+++..
T Consensus 85 leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL~--TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~ 162 (632)
T KOG0584|consen 85 LERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITELF--TSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQ 162 (632)
T ss_pred HHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeecc--cCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcC
Confidence 33455667888899999999999999877764444444433 578889999888766544322 223467888888887
Q ss_pred CCCCC
Q psy3012 234 NPDFL 238 (272)
Q Consensus 234 ~~~~~ 238 (272)
.|-.+
T Consensus 163 ~PPII 167 (632)
T KOG0584|consen 163 DPPII 167 (632)
T ss_pred CCCcc
Confidence 77654
No 13
>PF01371 Trp_repressor: Trp repressor protein; InterPro: IPR000831 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression. The operators at which it binds vary considerably in DNA sequence and location within the promoter; when bound to the Trp operon it recognises the sequence 5'-ACTAGT-3' and acts to prevent the initiation of transcription. The TrpR controls the trpEDCBA (trpO) operon and the genes for trpR, aroH, mtr and aroL, which are involved in the biosynthesis and uptake of the amino acid tryptophan []. The repressor binds to the operators only in the presence of L-tryptophan, thereby controlling the intracellular level of its effector; the complex also regulates Trp repressor biosynthesis by binding to its own regulatory region. TrpR acts as a dimer that is composed of identical 6-helical subunits, where four of the helices form the core of the protein and intertwine with the corresponding helices from the other subunit.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3FRW_H 3KOR_A 3SSW_N 1P6Z_N 1CO0_B 1JHG_A 1WRT_S 1WRS_R 1WRP_R 1RCS_B ....
Probab=21.45 E-value=3.4e+02 Score=19.93 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHHHHHHH-hhcCChhHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHH
Q psy3012 134 NFDERLAIMTRIIEMMIVL-QKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLE 192 (272)
Q Consensus 134 ~~~~Ra~~i~~~I~iA~~~-~~l~Nf~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~ 192 (272)
++.++..+-.+| +||.++ ..=..|..... ..|.....|.|-++.-+.-+..++..++
T Consensus 28 T~~E~~~l~~R~-~va~~lL~~g~syreIa~-~tgvS~aTItRvsr~Lk~~~~~y~~~l~ 85 (87)
T PF01371_consen 28 TPDELEALAQRW-QVAKELLDEGKSYREIAE-ETGVSIATITRVSRCLKYGDDGYRKVLE 85 (87)
T ss_dssp SHHHHHHHHHHH-HHHHHHHHTTSSHHHHHH-HHTSTHHHHHHHHHHHHHSHCHHHHHHH
T ss_pred CHHHHHHHHHHH-HHHHHHHHCCCCHHHHHH-HhCCCHHHHHHHHHHHHcCCHHHHHHHh
Confidence 455665555554 566644 44444544333 3466777788877765555444444444
Done!