Query psy3012
Match_columns 272
No_of_seqs 206 out of 1148
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 23:14:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ii0_A SOS-1, SON of sevenless 100.0 4.5E-63 1.5E-67 474.3 26.1 269 2-271 151-424 (490)
2 2ije_S Guanine nucleotide-rele 100.0 2.2E-61 7.5E-66 423.3 21.5 203 68-271 3-207 (240)
3 3ksy_A SOS-1, SON of sevenless 100.0 3.1E-59 1.1E-63 481.7 24.8 269 2-271 710-983 (1049)
4 3qxl_A RAS-specific guanine nu 100.0 3.5E-59 1.2E-63 415.6 21.1 208 62-271 24-236 (271)
5 4f7z_A RAP guanine nucleotide 100.0 1.3E-56 4.4E-61 461.4 24.2 208 62-271 752-961 (999)
6 3cf6_E RAP guanine nucleotide 100.0 2.1E-54 7.3E-59 429.2 23.3 208 62-271 447-656 (694)
7 3t6a_A Breast cancer anti-estr 99.8 2.5E-19 8.6E-24 159.3 13.0 157 65-225 43-215 (333)
8 3t6g_A SH2 domain-containing p 99.8 3E-19 1E-23 158.7 12.9 157 65-225 44-214 (331)
9 2kbw_B BH3-interacting domain 34.8 36 0.0012 19.8 2.7 21 72-92 13-33 (35)
10 2voi_B BH3-interacting domain 34.8 32 0.0011 19.9 2.5 21 72-92 9-29 (34)
11 1hgv_A PH75 inovirus major coa 34.0 21 0.00072 21.3 1.7 13 67-79 1-13 (46)
12 1v54_E Cytochrome C oxidase po 33.6 33 0.0011 25.3 3.1 44 150-194 53-96 (109)
No 1
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=100.00 E-value=4.5e-63 Score=474.29 Aligned_cols=269 Identities=55% Similarity=0.954 Sum_probs=242.4
Q ss_pred HHHHHHHHhhhhcCCchHHHHHHHHHHHHHHhhhhhh--hhhcccCCCCCCCccccCCCCCC-CcccccccCHHHHHHHH
Q psy3012 2 ILEKLKSFLLNEISGKSLRKWADIVLNLIQRKELDLE--KEITFAFNNSPPPIEVHVPINSI-DEFNILIAHPVEIARQL 78 (272)
Q Consensus 2 ll~~l~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~p~~i~~~~~~~~~-~~~~ll~~~~~eiA~QL 78 (272)
++.+|.+|++. +.|+.|+++++.+.++++++....+ .....++..+||++++.+..++. +.+++++++|.|||+||
T Consensus 151 ll~~L~~F~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ll~~~p~elA~QL 229 (490)
T 2ii0_A 151 LLQRMEEFIGT-VRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQL 229 (490)
T ss_dssp HHHHHHHHHTT-CCCTTTHHHHHHHHHHHHHHHHC----------CCSCCCCCCCCSSCTTCGGGCCTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHhcccCCCCcccccCCCCCccccccCCCCCcccchhhccCHHHHHHHH
Confidence 67899999984 6788899999999999988764322 22334566777888777655554 67899999999999999
Q ss_pred HHHHHHHhcCCChhhhhhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhcCCh
Q psy3012 79 TLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNF 158 (272)
Q Consensus 79 Tl~d~~lf~~I~~~E~l~~~w~k~~~~~~~pni~~~i~~~n~ls~wv~~~Il~~~~~~~Ra~~i~~~I~iA~~~~~l~Nf 158 (272)
|++|+++|++|.|.||++++|+++++...+||+.+++++||.+++||+++||.+.++++||++|++||+||.+|+++|||
T Consensus 230 Tlid~~lf~~I~~~E~l~~~w~~~~~~~~~pnl~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~kfI~iA~~c~~l~Nf 309 (490)
T 2ii0_A 230 TLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNF 309 (490)
T ss_dssp HHHHHHHHHHCCGGGTGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHCCCHHHHHHHHhcCCCcCCCCccHHHHHHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999998876667899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhcchhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHhcCCCCC
Q psy3012 159 NGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFL 238 (272)
Q Consensus 159 ~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~n~~~yr~~l~~~~~pcIP~lg~~L~DL~~i~eg~~~~~ 238 (272)
||+|||++||++++|+||++||+.|+.+.++.++++..++++||++||+.++++.+|||||+|+||+||+|+++|||+++
T Consensus 310 nsl~AIisgL~s~~I~RLk~TW~~v~~~~~~~~~~l~~l~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~egnp~~~ 389 (490)
T 2ii0_A 310 NGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL 389 (490)
T ss_dssp HHHHHHHHHHTSHHHHTCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCBCCCHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHHHHhccchhhhHHHHHHHCCHHHHHHHHHHHHhchHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred CCCC--cccHHHHHHHHHHHHHHHHhhcCCCCCcC
Q psy3012 239 PDSK--LINFTKRRKVAEIISEIQQYQTQIFFLIQ 271 (272)
Q Consensus 239 ~~~~--lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~ 271 (272)
+++| +|||.|+|+++++|.+|++||+.||+|.+
T Consensus 390 ~~~~~~lINf~K~r~~~~ii~~i~~~Q~~~Y~~~~ 424 (490)
T 2ii0_A 390 KRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRV 424 (490)
T ss_dssp EETTEEEEEHHHHHHHHHHHHHHGGGSSCCCSCCC
T ss_pred CCCCCeEEcHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 6533 99999999999999999999999999986
No 2
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}
Probab=100.00 E-value=2.2e-61 Score=423.33 Aligned_cols=203 Identities=33% Similarity=0.660 Sum_probs=196.1
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCChhhhhhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy3012 68 IAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIE 147 (272)
Q Consensus 68 ~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~~~pni~~~i~~~n~ls~wv~~~Il~~~~~~~Ra~~i~~~I~ 147 (272)
.++|.|||+|||++|+++|++|+|.||+++.|++.++...+||+.+++++||.++.||+++||.+++.++||++|++||+
T Consensus 3 ~~~p~eiA~QLTl~d~~lf~~I~~~E~l~~~w~~~~~~~~~p~i~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~i~~fI~ 82 (240)
T 2ije_S 3 LGSALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEIIRNEDISARASAIEKWVA 82 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGGGGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHhhhHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999988766679999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhc--chhhHHHHHHHHhcCCCCCccchhHHHH
Q psy3012 148 MMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNINPPCIPFFGMYLT 225 (272)
Q Consensus 148 iA~~~~~l~Nf~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l--~~~n~~~yr~~l~~~~~pcIP~lg~~L~ 225 (272)
||.+|+++|||||++||++||++++|+||++||+.|+++.++.+++|+.+ +++||++||++++++.+|||||+|+||+
T Consensus 83 iA~~~~~l~Nfns~~aI~~gL~~~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L~ 162 (240)
T 2ije_S 83 VADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLT 162 (240)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCCSSCBCCHHHHHH
T ss_pred HHHHHHhcCCHhHHHHHHHHhccchhhhHHHHHHHhhHHHHHHHHHHHHHHCccchHHHHHHHHHhcCCCccCccchHHH
Confidence 99999999999999999999999999999999999999999999999998 6799999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHhhcCCCCCcC
Q psy3012 226 NILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQIFFLIQ 271 (272)
Q Consensus 226 DL~~i~eg~~~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~ 271 (272)
||+++++|||+++++ |+|||+|+++++++|.+|++||+.+|+|.|
T Consensus 163 DL~~i~egnp~~~~~-~lINf~K~~~~~~ii~~i~~~q~~~y~~~~ 207 (240)
T 2ije_S 163 DLVFIEEGTPNYTED-GLVNFSKMRMISHIIREIRQFQQTTYKIDP 207 (240)
T ss_dssp HHHHHHHHSCSBCTT-SCBCHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHhcCCCCCCC-CcCcHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999999999999864 999999999999999999999999999986
No 3
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=100.00 E-value=3.1e-59 Score=481.66 Aligned_cols=269 Identities=55% Similarity=0.957 Sum_probs=246.7
Q ss_pred HHHHHHHHhhhhcCCchHHHHHHHHHHHHHHhhhhhh--hhhcccCCCCCCCccccCCCCCC-CcccccccCHHHHHHHH
Q psy3012 2 ILEKLKSFLLNEISGKSLRKWADIVLNLIQRKELDLE--KEITFAFNNSPPPIEVHVPINSI-DEFNILIAHPVEIARQL 78 (272)
Q Consensus 2 ll~~l~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~p~~i~~~~~~~~~-~~~~ll~~~~~eiA~QL 78 (272)
++.+|.+|++. +.++.++++++++.++++++..... .....++..+||+++++++.++. +.++|++++|.|||+||
T Consensus 710 Ll~~L~~Fl~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~ll~~~~~elA~QL 788 (1049)
T 3ksy_A 710 LLQRMEEFIGT-VRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQL 788 (1049)
T ss_dssp HHHHHHHHHHH-CCCTTHHHHHHHHHHHHHHHHHHHCC---CCCCCCSCCCCCCCCSSCTTCTTTCCTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHH-hccchHHHHHHHHHHHHHHHhhccccCccccccCCCCCCchhhcccCccccCCcccccCCHHHHHHHH
Confidence 68899999995 7788999999999999988765432 22345667777777777655543 78899999999999999
Q ss_pred HHHHHHHhcCCChhhhhhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhcCCh
Q psy3012 79 TLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNF 158 (272)
Q Consensus 79 Tl~d~~lf~~I~~~E~l~~~w~k~~~~~~~pni~~~i~~~n~ls~wv~~~Il~~~~~~~Ra~~i~~~I~iA~~~~~l~Nf 158 (272)
|++|+++|++|.|.||++++|+++++...+||+.+++++||.+++||+++||.+.++++||++|++||+||.+|+.+|||
T Consensus 789 Tlid~~lf~~I~p~E~l~~~w~~~~~~~~~pn~~~~i~~~n~~s~wV~~~Il~~~~~~~Ra~~i~~fI~iA~~c~~l~Nf 868 (1049)
T 3ksy_A 789 TLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNF 868 (1049)
T ss_dssp HHHHHHHHHHCCGGGGSSSTTTSSCHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999999877667999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhcchhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHhcCCCCC
Q psy3012 159 NGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFL 238 (272)
Q Consensus 159 ~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~n~~~yr~~l~~~~~pcIP~lg~~L~DL~~i~eg~~~~~ 238 (272)
||+|||++||++++|+||++||+.|+++.++.++++.+++++||++||++++++.+|||||+|+||+||+|+++|||+++
T Consensus 869 nsl~aIisgL~s~~I~RLk~TW~~v~~~~~~~~~~l~~l~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~eg~p~~~ 948 (1049)
T 3ksy_A 869 NGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL 948 (1049)
T ss_dssp HHHHHHHHHHHSHHHHTCTTTTTSSCHHHHHHHHHHHTTTHHHHHHHHHHHTTCCSSCCCCTHHHHHHHHHHHHHSCSEE
T ss_pred HHHHHHHHHcccchhHhHHHHHHHCCHHHHHHHHHHHhhchHHHHHHHHHHhhCCCCccceeHHHHHHHHHHHccCCccc
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred CC--CCcccHHHHHHHHHHHHHHHHhhcCCCCCcC
Q psy3012 239 PD--SKLINFTKRRKVAEIISEIQQYQTQIFFLIQ 271 (272)
Q Consensus 239 ~~--~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~ 271 (272)
++ +|+|||+|+++++++|.+|++||+.||+|.|
T Consensus 949 ~~~~~~lINf~K~~~~~~ii~~i~~~Q~~~Y~~~~ 983 (1049)
T 3ksy_A 949 KRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRV 983 (1049)
T ss_dssp EETTEEEEEHHHHHHHHHHHHHHHTTTSSCCCCCC
T ss_pred cCCCCCeEcHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 53 3799999999999999999999999999987
No 4
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens}
Probab=100.00 E-value=3.5e-59 Score=415.61 Aligned_cols=208 Identities=27% Similarity=0.525 Sum_probs=196.3
Q ss_pred CcccccccCHHHHHHHHHHHHHHHhcCCChhhhhhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy3012 62 DEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAI 141 (272)
Q Consensus 62 ~~~~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~~~pni~~~i~~~n~ls~wv~~~Il~~~~~~~Ra~~ 141 (272)
..+++++++|.|||+|||++|+++|++|+|.||+++.|+++++...+||+.+++++||.+++||+++||.+++.++||++
T Consensus 24 ~~fdil~~~p~elA~QLTlid~~lF~~I~p~E~l~~~w~k~~~~~~~pnl~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~ 103 (271)
T 3qxl_A 24 VVFDVLKVTPEEFASQITLMDIPVFKAIQPEELASCGWSKKEKHSLAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEI 103 (271)
T ss_dssp --CCGGGSCHHHHHHHHHHHHHHHHHTCCHHHHHHTCTTSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHHHcCCCHHHHHHhHhccCCcCCCCCcHHHHHHHHhHHHHHHHHHhcccCCHHHHHHH
Confidence 56889999999999999999999999999999999999987665678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhc--chhhHHHHHHHHhcCC-CCCcc
Q psy3012 142 MTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNIN-PPCIP 218 (272)
Q Consensus 142 i~~~I~iA~~~~~l~Nf~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l--~~~n~~~yr~~l~~~~-~pcIP 218 (272)
|++||+||.+|+++|||||++||++||++++|+||++||+.|+++.++.|++|+++ +++||++||+.+++.. +||||
T Consensus 104 i~kfI~IA~~c~~l~Nfnsl~AIisgL~s~~I~RLk~TW~~l~~k~~~~~~~L~~l~~~~~N~~~yR~~l~~~~~~p~IP 183 (271)
T 3qxl_A 104 LSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIP 183 (271)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCCBC
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHcccchHHHHHHHHHHCCHHHHHHHHHHHHHcCcchhHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999998 6799999999999875 89999
Q ss_pred chhHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHhhcC-CCC-CcC
Q psy3012 219 FFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQ-IFF-LIQ 271 (272)
Q Consensus 219 ~lg~~L~DL~~i~eg~~~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~-~Y~-~~~ 271 (272)
|+|+||+||+|+++|||++ +++++||.|++++++++.+|++||+. +|+ |.|
T Consensus 184 flg~~L~DL~fi~~g~p~~--~~~l~n~~k~~~~~~i~~~I~~~Q~~~~Y~~~~~ 236 (271)
T 3qxl_A 184 YLGIYLLDLIYIDSAYPAS--GSIMENEQRSNQMNNILRIIADLQVSCSYDHLTT 236 (271)
T ss_dssp CHHHHHHHHHHHHHHSCSS--SCHHHHHHHHHHHHHHHHHHHHHHHTCCCTTCCC
T ss_pred chHHHHHHHHHHHhcCCCc--ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCC
Confidence 9999999999999999997 33678899999999999999999998 994 876
No 5
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=100.00 E-value=1.3e-56 Score=461.40 Aligned_cols=208 Identities=21% Similarity=0.429 Sum_probs=201.8
Q ss_pred CcccccccCHHHHHHHHHHHHHHHhcCCChhhhhhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy3012 62 DEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAI 141 (272)
Q Consensus 62 ~~~~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~~~pni~~~i~~~n~ls~wv~~~Il~~~~~~~Ra~~ 141 (272)
...++++++|.|||+|||++|+++|++|+|.||++++|++.++...+|||.+++++||.+++||+++||.++++++||++
T Consensus 752 ~~~~~~~~~~~e~A~qlt~~~~~~f~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~wv~~~il~~~~~~~R~~~ 831 (999)
T 4f7z_A 752 TVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQL 831 (999)
T ss_dssp CHHHHTTSCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHCHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred cccchhcCCHHHHHHHHHHHHHHHHcCCCHHHHHHhHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 56789999999999999999999999999999999999988777889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhc--chhhHHHHHHHHhcCCCCCccc
Q psy3012 142 MTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNINPPCIPF 219 (272)
Q Consensus 142 i~~~I~iA~~~~~l~Nf~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l--~~~n~~~yr~~l~~~~~pcIP~ 219 (272)
|++||+||.+|+++|||||+|||++||++++|+||++||+.||.+.++.|++|+++ +++||++||++++++.+|||||
T Consensus 832 ~~~~i~ia~~~~~l~Nf~~~~ai~~~l~~~~i~RL~~tw~~~~~~~~~~~~~l~~l~~~~~n~~~yr~~l~~~~~p~iP~ 911 (999)
T 4f7z_A 832 LKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPF 911 (999)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHTTSHHHHTCHHHHHTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCCSSCBCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHcCCchhhhHHHHHHHCCHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCeece
Confidence 99999999999999999999999999999999999999999999999999999998 6799999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHhhcCCCCCcC
Q psy3012 220 FGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQIFFLIQ 271 (272)
Q Consensus 220 lg~~L~DL~~i~eg~~~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~ 271 (272)
||+||+||+|+++|||+++ +|+|||.|+++++++|.+|++||+.||++.+
T Consensus 912 ~g~~l~dl~~~~~gn~~~~--~~linf~k~~~~~~~i~~i~~~q~~~y~~~~ 961 (999)
T 4f7z_A 912 MPLLIKDMTFTHEGNKTFI--DNLVNFEKMRMIANTARTVRYYRSQPFNPDA 961 (999)
T ss_dssp HHHHHHHHHHHHHTSCSBS--SSSEEHHHHHHHHHHHHHHHHHTSSCCCCSS
T ss_pred ehHHHHHHHHHhccCCCCC--CCcCcHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 9999999999999999999 3899999999999999999999999999875
No 6
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=100.00 E-value=2.1e-54 Score=429.24 Aligned_cols=208 Identities=21% Similarity=0.429 Sum_probs=198.3
Q ss_pred CcccccccCHHHHHHHHHHHHHHHhcCCChhhhhhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy3012 62 DEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAI 141 (272)
Q Consensus 62 ~~~~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~~~pni~~~i~~~n~ls~wv~~~Il~~~~~~~Ra~~ 141 (272)
...++++++|.|||+|||++|+++|++|+|.||++++|++.+....+||+.+++++||.++.||+++||.++++++||++
T Consensus 447 ~~~~l~~~~~~elA~QLTl~d~~lf~~I~~~E~l~~~~~~~~~~~~~pni~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~ 526 (694)
T 3cf6_E 447 TVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQL 526 (694)
T ss_dssp CHHHHTTSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHCGGGTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred CCCchhcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34569999999999999999999999999999999999988777789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhc--chhhHHHHHHHHhcCCCCCccc
Q psy3012 142 MTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNINPPCIPF 219 (272)
Q Consensus 142 i~~~I~iA~~~~~l~Nf~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l--~~~n~~~yr~~l~~~~~pcIP~ 219 (272)
|++||+||.+|+++|||||++||++||++++|+||++||+.||++.++.|++|+.+ +++||++||+.++++.+|||||
T Consensus 527 i~~fI~iA~~c~~l~Nfnsl~aIisgL~s~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~N~~~yR~~l~~~~~p~IPf 606 (694)
T 3cf6_E 527 LKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPF 606 (694)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSCSSCBCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCCcchhhhHHHHHHCCHHHHHHHHHHHHHhCccccHHHHHHHHHhcCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999998 6799999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHhhcCCCCCcC
Q psy3012 220 FGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQIFFLIQ 271 (272)
Q Consensus 220 lg~~L~DL~~i~eg~~~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~ 271 (272)
+|+||+||+|+++|||+++ +|+|||.|+|+++++|.+|++||+.||.+.+
T Consensus 607 lg~~L~DL~fi~egn~~~~--~~lINf~K~r~i~~ii~~i~~~q~~~y~~~~ 656 (694)
T 3cf6_E 607 MPLLIKDMTFTHEGNKTFI--DNLVNFEKMRMIANTARTVRYYRSQPFNPDA 656 (694)
T ss_dssp HHHHHHHHHHHHHHSCSEE--TTEEEHHHHHHHHHHHHHHHHHTSSCCC---
T ss_pred HHHHHHHHHHHHcCCCchh--ccCcCHHHHHHHHHHHHHHHHHhhCCCCcCc
Confidence 9999999999999999998 4899999999999999999999999998864
No 7
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=159.34 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=117.5
Q ss_pred cccccCHHHHHHHHHHHHHHHhcCCChhhhhhhhcccCCCC--CCChh----HHHHHHHHHHHHHHHHHHhhCCC-CHHH
Q psy3012 65 NILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKA--EYSPN----LIKIMKHTTNFTRWLEKIIVEAE-NFDE 137 (272)
Q Consensus 65 ~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~--~~~pn----i~~~i~~~n~ls~wv~~~Il~~~-~~~~ 137 (272)
-+++.+|.++|+|||.+|+++++.....+-....++....- ..-|+ -..++++||.++.||+.+||.+. +.++
T Consensus 43 lL~~~~~~~lA~hlt~~D~~lar~l~~t~~~~~~mgv~sglELitlPhG~qlRldlleR~~~l~~wva~~IL~C~~~~~e 122 (333)
T 3t6a_A 43 LFTNNDPKVIAQHVLSMDCRVARILGVSEEMRRNMGVSSGLELITLPHGHQLRLDIIERHNTMAIGIAVDILGCTGTLED 122 (333)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTTSSCCCHHHHHHHSSSCHHHHTTSGGGHHHHHHHHHHHHHHHHHHHHHHHTSCCSHHH
T ss_pred HHhccChHHHHHHHHHHHHHHHHhcCCcHHHHhhhcCCCcceEEEeeccchhhhHHHHHhcccHHHHHHHHHhCCCchHH
Confidence 37889999999999999999987765544333333221100 00111 24689999999999999999875 5889
Q ss_pred HHHHHHHHHHHHHHHh-hcCChhHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhcchhhHHHHHHHHhcC----
Q psy3012 138 RLAIMTRIIEMMIVLQ-KLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNI---- 212 (272)
Q Consensus 138 Ra~~i~~~I~iA~~~~-~l~Nf~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~n~~~yr~~l~~~---- 212 (272)
|+.++.+||+||.+|. .++|++|++||+.||+++.|.||++||..+++++.+.+-.+++.- +.....+...
T Consensus 123 R~~lL~k~IqiA~~Lk~~~gNL~sf~AVm~aL~~pqVSRL~~TW~~Lr~k~te~ai~yEk~L----kP~~k~lneG~~~~ 198 (333)
T 3t6a_A 123 RAATLSKIIQVAVELKDSMGDLYSFSALMKALEMPQITRLEKTWTALRHQYTQTAILYEKQL----KPFSKLLHEGREST 198 (333)
T ss_dssp HHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHSHHHHTCHHHHHHHHHHSHHHHHHHHHTH----HHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccHHHHHHHHHHHHhhHHhhHHHHHHHHHh----hHHHHHhhCCCCCC
Confidence 9999999999999999 899999999999999999999999999999999888554444321 1222222221
Q ss_pred --C--CCCccchhHHHH
Q psy3012 213 --N--PPCIPFFGMYLT 225 (272)
Q Consensus 213 --~--~pcIP~lg~~L~ 225 (272)
+ .-|||++-.+++
T Consensus 199 ~~~~~~~t~Phv~Pl~~ 215 (333)
T 3t6a_A 199 CVPPNNVSVPLLMPLVT 215 (333)
T ss_dssp SCCTTCCSBCCCHHHHH
T ss_pred CCCCCCccchhHHHHHH
Confidence 1 358999977654
No 8
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=158.75 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=120.0
Q ss_pred cccccCHHHHHHHHHHHHHHHhcCCChhhhhhhhcccCCCC--CCChh----HHHHHHHHHHHHHHHHHHhhCCC-CHHH
Q psy3012 65 NILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKA--EYSPN----LIKIMKHTTNFTRWLEKIIVEAE-NFDE 137 (272)
Q Consensus 65 ~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~--~~~pn----i~~~i~~~n~ls~wv~~~Il~~~-~~~~ 137 (272)
-+++.+|.++|+|||.+|+++|+.....+-....++....- ..-|+ -..+++++|.+..||+.+||.+. +..+
T Consensus 44 lL~~~~~~~lA~hlt~~D~~l~~~l~vt~~~~~~mgv~sglELitlPhG~qlRldlleR~~~l~~~va~~IL~c~g~~~~ 123 (331)
T 3t6g_A 44 LLAEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLDLLERFHTMSIMLAVDILGSTGSAEE 123 (331)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHTTSSSCCHHHHHHHSSSCHHHHTTSGGGHHHHHHHHHHHHHHHHHHHHHHHTCCSCHHH
T ss_pred HHhccChHHHHHHHHHHHHHHHHhcCCCHHHHhhhcCCCcceeEEecccchhhHHHHHHhcchHHHHHHHHhcCCCCHHH
Confidence 47889999999999999999998865444333333221100 00111 24689999999999999999986 8999
Q ss_pred HHHHHHHHHHHHHHHh-hcCChhHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhcchhhHHHHHHHHhcCC---
Q psy3012 138 RLAIMTRIIEMMIVLQ-KLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNIN--- 213 (272)
Q Consensus 138 Ra~~i~~~I~iA~~~~-~l~Nf~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~n~~~yr~~l~~~~--- 213 (272)
|+.++.+||+||.+|. .++|++|++||+.||+++.|.||++||..+++++.+.+-.+++. -+-....+....
T Consensus 124 Ra~lL~k~IqiA~~Lk~~~gnL~sF~AIm~aL~~pqVsRLe~TW~~Lr~k~te~Ai~yEk~----LkP~~k~lneg~~~~ 199 (331)
T 3t6g_A 124 RAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQISRLEQTWVTLRQRHTEGAILYEKK----LKPFLKSLNEGKEGP 199 (331)
T ss_dssp HHHHHHHHHHHHHHHHHTSCBHHHHHHHHHHHTSHHHHTCHHHHHHHHHHCHHHHHHHHHT----HHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHhhhccHHHHHHHHHHHHhhhhhhHHHHHHHHH----hhHHHHHHhCCCCCC
Confidence 9999999999999999 99999999999999999999999999999999988775544432 122333344332
Q ss_pred ---CCCccchhHHHH
Q psy3012 214 ---PPCIPFFGMYLT 225 (272)
Q Consensus 214 ---~pcIP~lg~~L~ 225 (272)
.-|||++..+++
T Consensus 200 ~~~~~~~Phl~Pl~~ 214 (331)
T 3t6g_A 200 PLSNTTFPHVLPLIT 214 (331)
T ss_dssp CGGGCSBCCCHHHHH
T ss_pred CCCCCccchHHHHHH
Confidence 258999877654
No 9
>2kbw_B BH3-interacting domain death agonist; MCL-1, BID_BH3, complex, alternative splicing, apoptosis, CY developmental protein, differentiation, membrane; NMR {Homo sapiens}
Probab=34.80 E-value=36 Score=19.83 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhcCCChh
Q psy3012 72 VEIARQLTLLEFDYFRSVKPS 92 (272)
Q Consensus 72 ~eiA~QLTl~d~~lf~~I~~~ 92 (272)
..||+||.-+--.++.+|+|.
T Consensus 13 ~~ia~qla~igd~~d~~i~p~ 33 (35)
T 2kbw_B 13 RNIARHLAQVGDSMDRSIPPG 33 (35)
T ss_dssp HHHHHHHHHHHHHHHHSCTTT
T ss_pred HHHHHHccchhhhhhcccCCc
Confidence 359999999999999999983
No 10
>2voi_B BH3-interacting domain death agonist P13; protein-protein complex, BCL-2, membrane, apoptosis, Pro-surviVal, mitochondrion, phosphoprotein; 2.1A {Mus musculus}
Probab=34.79 E-value=32 Score=19.89 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhcCCChh
Q psy3012 72 VEIARQLTLLEFDYFRSVKPS 92 (272)
Q Consensus 72 ~eiA~QLTl~d~~lf~~I~~~ 92 (272)
..||+||.-+--.++.+|+|.
T Consensus 9 ~~ia~~la~igd~~d~~i~p~ 29 (34)
T 2voi_B 9 HNIARHLAQIGDEMDHNIQPT 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHccchhhhhhcccCcc
Confidence 359999999999999999993
No 11
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=34.01 E-value=21 Score=21.34 Aligned_cols=13 Identities=38% Similarity=0.524 Sum_probs=10.3
Q ss_pred cccCHHHHHHHHH
Q psy3012 67 LIAHPVEIARQLT 79 (272)
Q Consensus 67 l~~~~~eiA~QLT 79 (272)
+|++|.|+|.|.|
T Consensus 1 mdfnpseia~~v~ 13 (46)
T 1hgv_A 1 MDFNPSEVASQVT 13 (46)
T ss_dssp CCSCTHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 3678888888876
No 12
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=33.64 E-value=33 Score=25.26 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=28.3
Q ss_pred HHHhhcCChhHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHH
Q psy3012 150 IVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDA 194 (272)
Q Consensus 150 ~~~~~l~Nf~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l 194 (272)
..||.+|+|....-++-|+..-.-.+ +..|..+-++.+-.+++|
T Consensus 53 rAcRRvND~alAVR~lE~iK~K~~~~-~~iY~~~lqElkPtl~EL 96 (109)
T 1v54_E 53 RACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVIQELRPTLNEL 96 (109)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHhhHHHHh
Confidence 68999999999999988886544333 333544444444444443
Done!