Query psy3012
Match_columns 272
No_of_seqs 206 out of 1148
Neff 7.8
Searched_HMMs 13730
Date Fri Aug 16 23:15:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3012.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3012hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nvus_ a.117.1.1 (S:) Son of 100.0 4.9E-59 3.6E-63 443.4 26.4 269 2-271 145-418 (481)
2 d1v54e_ a.118.11.1 (E:) Cytoch 32.4 17 0.0012 24.9 3.1 45 149-194 48-92 (105)
3 d1lwma_ a.21.1.1 (A:) NHP6a {B 18.3 75 0.0055 20.4 4.4 22 175-196 54-75 (93)
4 d2ejna2 a.101.1.1 (A:75-144) A 11.5 28 0.002 22.0 0.3 13 215-227 2-14 (70)
5 d2lefa_ a.21.1.1 (A:) Lymphoid 10.9 85 0.0062 19.8 2.8 28 168-195 28-56 (86)
6 d1eg3a1 a.39.1.7 (A:85-209) Dy 10.5 80 0.0058 22.0 2.7 62 185-249 2-66 (125)
7 d2cwya1 a.246.2.1 (A:1-94) Hyp 9.2 1E+02 0.0076 20.0 2.8 45 109-154 3-51 (94)
8 d1tc3c_ a.4.1.2 (C:) Transposa 8.5 72 0.0052 18.4 1.4 16 65-80 18-33 (51)
9 d1k99a_ a.21.1.1 (A:) Nucleola 8.4 1.8E+02 0.013 18.1 3.8 33 175-210 44-76 (91)
10 d1jjcb1 a.6.1.1 (B:1-38,B:152- 7.8 1.1E+02 0.0078 19.1 2.3 17 68-84 15-31 (77)
No 1
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=4.9e-59 Score=443.44 Aligned_cols=269 Identities=55% Similarity=0.958 Sum_probs=238.7
Q ss_pred HHHHHHHHhhhhcCCchHHHHHHHHHHHHHHhhhhhhh--hhcccCCCCCCCccccCCCCCC-CcccccccCHHHHHHHH
Q psy3012 2 ILEKLKSFLLNEISGKSLRKWADIVLNLIQRKELDLEK--EITFAFNNSPPPIEVHVPINSI-DEFNILIAHPVEIARQL 78 (272)
Q Consensus 2 ll~~l~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~p~~i~~~~~~~~~-~~~~ll~~~~~eiA~QL 78 (272)
++.++.+|+. .+.+..+.+.++.+.+.++++...... ....+....||+++.....++. ..+++++++|.|||+||
T Consensus 145 ll~~l~~f~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~eiA~QL 223 (481)
T d1nvus_ 145 LLQRMEEFIG-TVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQL 223 (481)
T ss_dssp HHHHHHHHHH-HCCSTTTHHHHHHHHHHHHHHHHC------CCCCCSSCCCCCCCCSSCTTCTTTCCTTTSCHHHHHHHH
T ss_pred HHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHhhhccCccccccccCCCCccccccCCCCCCCCcccccCCHHHHHHHH
Confidence 5788999998 566777888888899988887654321 1122223334545544443433 67899999999999999
Q ss_pred HHHHHHHhcCCChhhhhhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhcCCh
Q psy3012 79 TLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNF 158 (272)
Q Consensus 79 Tl~d~~lf~~I~~~E~l~~~w~k~~~~~~~pni~~~i~~~n~ls~wv~~~Il~~~~~~~Ra~~i~~~I~iA~~~~~l~Nf 158 (272)
|++|+++|.+|+|.||++++|+++++...+|||.+++++||.+++||+++||.++++++||++|++||+||.+|+++|||
T Consensus 224 Tl~~~~~f~~I~~~E~l~~~~~~~~~~~~~pni~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~fI~ia~~~~~l~Nf 303 (481)
T d1nvus_ 224 TLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNF 303 (481)
T ss_dssp HHHHHHHHHTCCGGGTGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHhcCCHHHHHHHHHcccCCCCCCCcHHHHHHHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999887778999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhcchhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHhcCCCCC
Q psy3012 159 NGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFL 238 (272)
Q Consensus 159 ~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~n~~~yr~~l~~~~~pcIP~lg~~L~DL~~i~eg~~~~~ 238 (272)
||++||++||++++|+||++||+.|+.+.++.++++++++++||++||+.+.++.+|||||+|+||+||+++++|||+++
T Consensus 304 ~s~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~l~~l~~~n~~~yr~~l~~~~~p~IP~lg~~l~Dl~~~~~gn~~~~ 383 (481)
T d1nvus_ 304 NGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL 383 (481)
T ss_dssp HHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCBCCSHHHHHHHHHHHHSSCSEE
T ss_pred HHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHhcchhHHHHHHHHhcCCCCeEeeeccHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999987
Q ss_pred CC--CCcccHHHHHHHHHHHHHHHHhhcCCCCCcC
Q psy3012 239 PD--SKLINFTKRRKVAEIISEIQQYQTQIFFLIQ 271 (272)
Q Consensus 239 ~~--~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~ 271 (272)
+. +|+|||.|+++++++|.+|++||+.+|+|.|
T Consensus 384 ~~~~~~lINf~K~~~i~~~i~~i~~~Q~~~y~~~~ 418 (481)
T d1nvus_ 384 KRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRV 418 (481)
T ss_dssp EETTEEEEEHHHHHHHHHHHHHHHHHHSCCCCCCC
T ss_pred cCCCCceEcHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 52 4799999999999999999999999999987
No 2
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}
Probab=32.41 E-value=17 Score=24.87 Aligned_cols=45 Identities=13% Similarity=0.244 Sum_probs=27.9
Q ss_pred HHHHhhcCChhHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHH
Q psy3012 149 MIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDA 194 (272)
Q Consensus 149 A~~~~~l~Nf~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l 194 (272)
-..||.+|+|....-|+-|+..-.-.+ +..|..+-++.+-.+++|
T Consensus 48 LrAcRRvND~alAVR~lE~vK~K~~~~-k~~y~yilqelkptl~EL 92 (105)
T d1v54e_ 48 LRACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVIQELRPTLNEL 92 (105)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhHHHHh
Confidence 368999999999998888876443222 344444444444444443
No 3
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.26 E-value=75 Score=20.36 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=17.7
Q ss_pred hhHHHhhhCChhHHHHHHHHHh
Q psy3012 175 RLRFTFQALPTRLQKVLEDARE 196 (272)
Q Consensus 175 RLk~tw~~l~~~~~~~~~~l~~ 196 (272)
.|...|..++.+.+..|.....
T Consensus 54 ~l~~~W~~ls~~eK~~y~~~a~ 75 (93)
T d1lwma_ 54 KLGEKWKALTPEEKQPYEAKAQ 75 (93)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3678899999999888876553
No 4
>d2ejna2 a.101.1.1 (A:75-144) Allergen Fel d I-B chain {Cat (Felis catus) [TaxId: 9685]}
Probab=11.50 E-value=28 Score=21.98 Aligned_cols=13 Identities=15% Similarity=0.639 Sum_probs=10.8
Q ss_pred CCccchhHHHHHH
Q psy3012 215 PCIPFFGMYLTNI 227 (272)
Q Consensus 215 pcIP~lg~~L~DL 227 (272)
.|+||++.|..=+
T Consensus 2 AC~~Ff~~y~~vl 14 (70)
T d2ejna2 2 TCPIFYDVFFAVA 14 (70)
T ss_dssp SCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHH
Confidence 5999999998655
No 5
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.87 E-value=85 Score=19.78 Aligned_cols=28 Identities=25% Similarity=0.185 Sum_probs=20.1
Q ss_pred hCchhhhh-hHHHhhhCChhHHHHHHHHH
Q psy3012 168 MGSAAVYR-LRFTFQALPTRLQKVLEDAR 195 (272)
Q Consensus 168 L~s~~I~R-Lk~tw~~l~~~~~~~~~~l~ 195 (272)
+....|.+ |...|..++++.+..|.++.
T Consensus 28 ~~~~~Isk~lg~~Wk~ls~~eK~~y~~~A 56 (86)
T d2lefa_ 28 KESAAINQILGRRWHALSREEQAKYYELA 56 (86)
T ss_dssp CCHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33344433 77899999999888887654
No 6
>d1eg3a1 a.39.1.7 (A:85-209) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.47 E-value=80 Score=22.00 Aligned_cols=62 Identities=8% Similarity=0.261 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHhcchhhHHHHHHHHhc--C-CCCCccchhHHHHHHHHHHhcCCCCCCCCCcccHHHH
Q psy3012 185 TRLQKVLEDARELNGDHFKKYQEKLRN--I-NPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFTKR 249 (272)
Q Consensus 185 ~~~~~~~~~l~~l~~~n~~~yr~~l~~--~-~~pcIP~lg~~L~DL~~i~eg~~~~~~~~~lINf~K~ 249 (272)
++..+.++++.++.+=-|..||.+++- . +.-|+=.+.++.-.=.|-+.|-.. ++..+|....
T Consensus 2 P~m~el~~~l~dln~IrfsaYRTA~KLR~vQK~~~l~lv~l~~~~e~f~~~~l~~---~d~~l~v~~l 66 (125)
T d1eg3a1 2 PKMTELYQSLADLNNVRFSAYRTAMKLRRLQKALCLDLLSLSAACDALDQHNLKQ---NDQPMDILQI 66 (125)
T ss_dssp HHHHHHHHHGGGGTTCSSHHHHHHHHHHHHHHHTTGGGCCHHHHHHHHHHTTCCC---TTSEEEHHHH
T ss_pred chHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHcCCCC---CccCCCHHHH
Confidence 355677777777655557889987652 1 123444444433333444444432 2367787643
No 7
>d2cwya1 a.246.2.1 (A:1-94) Hypothetical protein TTHA0068 {Thermus thermophilus [TaxId: 274]}
Probab=9.22 E-value=1e+02 Score=20.02 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHHHHHHhh
Q psy3012 109 PNLIKIMKHTTNFTRWLEKIIVEA----ENFDERLAIMTRIIEMMIVLQK 154 (272)
Q Consensus 109 pni~~~i~~~n~ls~wv~~~Il~~----~~~~~Ra~~i~~~I~iA~~~~~ 154 (272)
|....-++.||.=-.|-+++++.. ....+ ...+.-+|++|-.+..
T Consensus 3 P~~~~gi~lfn~g~y~eaHE~lE~~W~~~~~~e-r~~~qgLIQ~Ava~~h 51 (94)
T d2cwya1 3 PDWEEVLGLWRAGRYYEVHEVLEPYWLKATGEE-RRLLQGVILLAAALHQ 51 (94)
T ss_dssp CCHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHhhCCCch-HHHHHHHHHHHHHHHH
Confidence 667788999998888889998853 23333 4689999999877654
No 8
>d1tc3c_ a.4.1.2 (C:) Transposase tc3a1-65 {Caenorhabditis elegans [TaxId: 6239]}
Probab=8.51 E-value=72 Score=18.37 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=12.5
Q ss_pred cccccCHHHHHHHHHH
Q psy3012 65 NILIAHPVEIARQLTL 80 (272)
Q Consensus 65 ~ll~~~~~eiA~QLTl 80 (272)
..++++-.|+|||++.
T Consensus 18 ~~L~~slhemaR~i~r 33 (51)
T d1tc3c_ 18 KLLNVSLHEMSRKISR 33 (51)
T ss_dssp HHTTCCHHHHHHHHTC
T ss_pred HHhCCcHHHHHHHHHH
Confidence 3567888999999863
No 9
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.36 E-value=1.8e+02 Score=18.06 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=23.4
Q ss_pred hhHHHhhhCChhHHHHHHHHHhcchhhHHHHHHHHh
Q psy3012 175 RLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLR 210 (272)
Q Consensus 175 RLk~tw~~l~~~~~~~~~~l~~l~~~n~~~yr~~l~ 210 (272)
.|...|..++.+.+..|.+... .....|...+.
T Consensus 44 ~l~~~W~~ls~~eK~~y~~~a~---~~~~~y~~~~~ 76 (91)
T d1k99a_ 44 ILSKKYKELPEKKKMKYIQDFQ---REKQEFERNLA 76 (91)
T ss_dssp HHHHHHHHSCSTTHHHHHHHHH---HHHHHHHHHHG
T ss_pred HHHhHhcCCCHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3778999999998888877652 33456666554
No 10
>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=7.82 E-value=1.1e+02 Score=19.13 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=14.5
Q ss_pred ccCHHHHHHHHHHHHHH
Q psy3012 68 IAHPVEIARQLTLLEFD 84 (272)
Q Consensus 68 ~~~~~eiA~QLTl~d~~ 84 (272)
+.+++++|+.||..-.+
T Consensus 15 ~~s~~eLae~LT~~G~E 31 (77)
T d1jjcb1 15 LESPEVLEERLAGLGFE 31 (77)
T ss_dssp CCCHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHhhcccc
Confidence 57899999999988753
Done!