RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3012
         (272 letters)



>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 481

 Score =  216 bits (552), Expect = 2e-68
 Identities = 148/269 (55%), Positives = 203/269 (75%), Gaps = 6/269 (2%)

Query: 2   ILEKLKSFLLNEISGKSLRKWADIVLNLIQRKELDLE--KEITFAFNNSPPPIEVHVPIN 59
           +L++++ F+   + GK+++KW + +  +IQRK++  +        F +SPP +E H+   
Sbjct: 145 LLQRMEEFI-GTVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRP 203

Query: 60  S-IDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHT 118
             I+ F++L  HP+EIARQLTLLE D +R+V+PSELVGSVWTK++K   SPNL+K+++HT
Sbjct: 204 GHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHT 263

Query: 119 TNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRF 178
           TN T W EK IVE EN +ER+A+++RIIE++ V Q+LNNFNGVL V SAM S+ VYRL  
Sbjct: 264 TNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDH 323

Query: 179 TFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFL 238
           TF+ +P+R +K+LE+A EL+ DH+KKY  KLR+INPPC+PFFG+YLTNIL  EEGNP+ L
Sbjct: 324 TFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL 383

Query: 239 PDS--KLINFTKRRKVAEIISEIQQYQTQ 265
                +LINF+KRRKVAEI  EIQQYQ Q
Sbjct: 384 KRHGKELINFSKRRKVAEITGEIQQYQNQ 412


>d1pn5a1 a.77.1.5 (A:59-151) NALP1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 93

 Score = 26.6 bits (59), Expect = 1.0
 Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 7/38 (18%)

Query: 185 TRLQKVLEDARELNGDHFKKYQEKLRNINP----PCIP 218
            RL   LE    L  +  K++Q  L N           
Sbjct: 7   GRLACYLE---FLKKEELKEFQLLLANKAHSRSSSGET 41


>d1u3ma_ d.6.1.1 (A:) Prion protein domain {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 117

 Score = 25.3 bits (55), Expect = 4.9
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 112 IKIMKHT-TNFTRWLEKIIVEAENFDE---RLAIMTRIIEMMIVLQ 153
           I + +++     +      V A N  E      ++T++I  M V Q
Sbjct: 64  ITVTEYSIGPAAKKNTSEAVAAANQTEVEMENKVVTKVIREMCVQQ 109


>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli
           [TaxId: 562]}
          Length = 228

 Score = 25.1 bits (54), Expect = 8.7
 Identities = 15/122 (12%), Positives = 32/122 (26%), Gaps = 4/122 (3%)

Query: 144 RIIEMM--IVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDH 201
           R  E +   V     +      +   + S    +  F ++             R +  D 
Sbjct: 60  RTEEQLGYAVFAFPMSVGRQWGMGFLLQSN-DKQPSFLWERYKAFFPTAEAKLRAMKPDE 118

Query: 202 FKKYQEKLRN-INPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQ 260
           F + Q+ +   +                  + GN  F    K++   K     ++     
Sbjct: 119 FAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFH 178

Query: 261 QY 262
           Q 
Sbjct: 179 QA 180


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,064,583
Number of extensions: 53500
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 8
Length of query: 272
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,254,276
Effective search space: 235803888
Effective search space used: 235803888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)