BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3013
         (151 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IZS|AA Chain a, Localization Of The Large Subunit Ribosomal Proteins Into
           A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
           Translating 80s Ribosome
 pdb|3U5E|Z Chain Z, The Structure Of The Eukaryotic Ribosome At 3.0 A
           Resolution. This Entry Contains Proteins Of The 60s
           Subunit, Ribosome A
 pdb|3U5I|Z Chain Z, The Structure Of The Eukaryotic Ribosome At 3.0 A
           Resolution. This Entry Contains Proteins Of The 60s
           Subunit, Ribosome B
 pdb|4B6A|Z Chain Z, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
           With Arx1 And Rei1
          Length = 136

 Score =  115 bits (288), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 68/86 (79%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           M K +KAGK+ +V+ GRYAG+K V++K +D+G+    +GHALVAGI+RYP KVTK+    
Sbjct: 1   MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAK 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYT 118
              KR+KIKPF+KV+NYNHL+PTRYT
Sbjct: 61  KVAKRTKIKPFIKVVNYNHLLPTRYT 86


>pdb|4A18|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With
           Initiation Factor 6. This File Contains 26s Rrna And
           Proteins Of Molecule 1
 pdb|4A1B|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With
           Initiation Factor 6. This File Contains 26s Rrna And
           Proteins Of Molecule 3.
 pdb|4A1D|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With
           Initiation Factor 6. This File Contains 26s Rrna And
           Proteins Of Molecule 4.
 pdb|4A19|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With
           Initiation Factor 6. This File Contains 26s Rrna And
           Proteins Of Molecule 2
          Length = 144

 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 72/90 (80%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           M K +K G++V++L GR+AG+KAV++K+ +DGT D+++GH LVAG++R P+KVTKRM   
Sbjct: 1   MAKFLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSK 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTYPDM 122
             +KR+ +KPF+K +N NH+MPTRY+  ++
Sbjct: 61  KIQKRTSVKPFIKYVNLNHIMPTRYSVKEL 90


>pdb|3IZR|AA Chain a, Localization Of The Large Subunit Ribosomal Proteins Into
           A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
           Ribosome
          Length = 136

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 71/93 (76%), Gaps = 1/93 (1%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           M K +K GK V++L GR+AGRKAV+++ +++GT D+ YGH LVAG+ +YP+KV ++ +  
Sbjct: 1   MVKFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTYP-DMQE 124
              K+S++K FLK++N+ HLMPTRYT   D++E
Sbjct: 61  KTAKKSRVKCFLKLVNFTHLMPTRYTLDVDLKE 93


>pdb|3ZF7|AA Chain a, High-resolution Cryo-electron Microscopy Structure Of The
           Trypanosoma Brucei Ribosome
          Length = 133

 Score = 92.8 bits (229), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 35  KIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLF 94
           K +K GK+V++ SGRYAG+KAV+++  D    ++ YGH+L+AGI +YPRKV + M+K   
Sbjct: 2   KFLKPGKVVIMTSGRYAGKKAVIVQNTDTRNKERPYGHSLLAGIKKYPRKVVRGMSKRSI 61

Query: 95  KKRSKIKPFLKVLNYNHLMPTRYTYPDMQEKLQ 127
            +RS++  FL+V+N+ H +PTRY   D+  +L+
Sbjct: 62  TRRSQVGVFLRVVNHKHFLPTRYNM-DLSRELR 93


>pdb|3ZF7|VV Chain v, High-resolution Cryo-electron Microscopy Structure Of
          The Trypanosoma Brucei Ribosome
          Length = 192

 Score = 32.0 bits (71), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 31 SKMGKIMKAGKIVLVLSGRYAGRKAVVLK 59
          S + K  K G I ++L+GR+ GR+AV+LK
Sbjct: 24 STVRKSCKPGTIAIILAGRFRGRRAVILK 52


>pdb|3IZR|G Chain G, Localization Of The Large Subunit Ribosomal Proteins Into
           A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
           Ribosome
          Length = 219

 Score = 30.4 bits (67), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 29  HISKMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDG 64
           H +K+   +  G ++++L+GRY G++ V LK    G
Sbjct: 67  HPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLQSG 102


>pdb|1WX1|A Chain A, Crystal Structure Of
           Nictinate-Nucleotide-Dimethylbenzimidazole
           Phosphoribosyltransferase From Thermus Thermophilus Hb8
 pdb|1WX1|B Chain B, Crystal Structure Of
           Nictinate-Nucleotide-Dimethylbenzimidazole
           Phosphoribosyltransferase From Thermus Thermophilus Hb8
          Length = 335

 Score = 30.0 bits (66), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 10/53 (18%)

Query: 52  GRKAVVLKTYDDGTADKQYGHALVA-GIDRYPRKVTKRMNKTLFKKRSKIKPF 103
           GR AVV+   D         H +VA G+  YP++VT++M     +  + I  F
Sbjct: 45  GRGAVVVAAAD---------HGVVAEGVSAYPQEVTRQMVLNFLRGGAAINQF 88


>pdb|1J33|A Chain A, Crystal Structure Of Cobt From Thermus Thermophilus Hb8
          Length = 335

 Score = 30.0 bits (66), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 10/53 (18%)

Query: 52  GRKAVVLKTYDDGTADKQYGHALVA-GIDRYPRKVTKRMNKTLFKKRSKIKPF 103
           GR AVV+   D         H +VA G+  YP++VT++M     +  + I  F
Sbjct: 45  GRGAVVVAAAD---------HGVVAEGVSAYPQEVTRQMVLNFLRGGAAINQF 88


>pdb|3J21|5 Chain 5, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
          Revealed By Cryo-em: Implications For Evolution Of
          Eukaryotic Ribosomes (50s Ribosomal Proteins)
 pdb|3J21|K Chain K, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
          Revealed By Cryo-em: Implications For Evolution Of
          Eukaryotic Ribosomes (50s Ribosomal Proteins)
          Length = 83

 Score = 28.9 bits (63), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 8/54 (14%)

Query: 37 MKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMN 90
          +  G+I +V++GR AG+K VV+        DK +     AG+++  R   +RMN
Sbjct: 4  IDVGRIAVVIAGRRAGQKVVVVDII-----DKNFVLVTGAGLNKVKR---RRMN 49


>pdb|3IZS|G Chain G, Localization Of The Large Subunit Ribosomal Proteins
          Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
          Translating 80s Ribosome
 pdb|3O58|F Chain F, Yeast 80s Ribosome. This Entry Consists Of The 60s
          Subunit Of The First 80s In The Asymmetric Unit.
 pdb|3O5H|F Chain F, Yeast 80s Ribosome. This Entry Consists Of The 60s
          Subunit Of The Second 80s In The Asymmetric Unit.
 pdb|3U5E|E Chain E, The Structure Of The Eukaryotic Ribosome At 3.0 A
          Resolution. This Entry Contains Proteins Of The 60s
          Subunit, Ribosome A
 pdb|3U5I|E Chain E, The Structure Of The Eukaryotic Ribosome At 3.0 A
          Resolution. This Entry Contains Proteins Of The 60s
          Subunit, Ribosome B
 pdb|4B6A|E Chain E, Cryo-Em Structure Of The 60s Ribosomal Subunit In
          Complex With Arx1 And Rei1
          Length = 176

 Score = 28.1 bits (61), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 19/26 (73%)

Query: 40 GKIVLVLSGRYAGRKAVVLKTYDDGT 65
          G ++++L+GR+ G++ V LK  +D T
Sbjct: 37 GTVLILLAGRFRGKRVVYLKHLEDNT 62


>pdb|1MJG|M Chain M, Crystal Structure Of Bifunctional Carbon Monoxide
           DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
           Thermoacetica (F. Clostridium Thermoaceticum)
 pdb|1MJG|N Chain N, Crystal Structure Of Bifunctional Carbon Monoxide
           DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
           Thermoacetica (F. Clostridium Thermoaceticum)
 pdb|1MJG|O Chain O, Crystal Structure Of Bifunctional Carbon Monoxide
           DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
           Thermoacetica (F. Clostridium Thermoaceticum)
 pdb|1MJG|P Chain P, Crystal Structure Of Bifunctional Carbon Monoxide
           DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
           Thermoacetica (F. Clostridium Thermoaceticum)
          Length = 729

 Score = 26.9 bits (58), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 68  KQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKV 106
           K YG  LVA +      +  R+  T+F   +K+K +++V
Sbjct: 442 KNYGEILVAKMKEEFPAIVDRVQVTIFTDEAKVKEYMEV 480


>pdb|1OAO|C Chain C, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
           Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
           Dehydrogenase
 pdb|1OAO|D Chain D, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
           Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
           Dehydrogenase
 pdb|2Z8Y|M Chain M, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
           DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
           Thermoacetica
 pdb|2Z8Y|N Chain N, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
           DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
           Thermoacetica
 pdb|2Z8Y|O Chain O, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
           DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
           Thermoacetica
 pdb|2Z8Y|P Chain P, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
           DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
           Thermoacetica
 pdb|3I01|M Chain M, Native Structure Of Bifunctional Carbon Monoxide
           DehydrogenaseACETYL- Coa Synthase From Moorella
           Thermoacetica, Water-Bound C-Cluster.
 pdb|3I01|N Chain N, Native Structure Of Bifunctional Carbon Monoxide
           DehydrogenaseACETYL- Coa Synthase From Moorella
           Thermoacetica, Water-Bound C-Cluster.
 pdb|3I01|O Chain O, Native Structure Of Bifunctional Carbon Monoxide
           DehydrogenaseACETYL- Coa Synthase From Moorella
           Thermoacetica, Water-Bound C-Cluster.
 pdb|3I01|P Chain P, Native Structure Of Bifunctional Carbon Monoxide
           DehydrogenaseACETYL- Coa Synthase From Moorella
           Thermoacetica, Water-Bound C-Cluster
          Length = 729

 Score = 26.9 bits (58), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 68  KQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKV 106
           K YG  LVA +      +  R+  T+F   +K+K +++V
Sbjct: 442 KNYGEILVAKMKEEFPAIVDRVQVTIFTDEAKVKEYMEV 480


>pdb|3I04|M Chain M, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
           DehydrogenaseACETYL-Coa Synthase From Moorella
           Thermoacetica, Cyanide-Bound C-Cluster
 pdb|3I04|N Chain N, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
           DehydrogenaseACETYL-Coa Synthase From Moorella
           Thermoacetica, Cyanide-Bound C-Cluster
 pdb|3I04|O Chain O, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
           DehydrogenaseACETYL-Coa Synthase From Moorella
           Thermoacetica, Cyanide-Bound C-Cluster
 pdb|3I04|P Chain P, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
           DehydrogenaseACETYL-Coa Synthase From Moorella
           Thermoacetica, Cyanide-Bound C-Cluster
          Length = 728

 Score = 26.9 bits (58), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 68  KQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKV 106
           K YG  LVA +      +  R+  T+F   +K+K +++V
Sbjct: 441 KNYGEILVAKMKEEFPAIVDRVQVTIFTDEAKVKEYMEV 479


>pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
           Muts, D693n Mutant, In Complex With Gt Mismatched Dna
 pdb|3K0S|B Chain B, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
           Muts, D693n Mutant, In Complex With Gt Mismatched Dna
          Length = 799

 Score = 26.9 bits (58), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 52  GRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTL 93
           G     + +  DG A K YG A VA +   P++V KR  + L
Sbjct: 752 GDTIAFMHSVQDGAASKSYGLA-VAALAGVPKEVIKRARQKL 792


>pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
           Muts, E38a Mutant, In Complex With A G.T Mismatch
 pdb|1WBB|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
           Muts, E38a Mutant, In Complex With A G.T Mismatch
          Length = 800

 Score = 26.9 bits (58), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 52  GRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTL 93
           G     + +  DG A K YG A VA +   P++V KR  + L
Sbjct: 753 GDTIAFMHSVQDGAASKSYGLA-VAALAGVPKEVIKRARQKL 793


>pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
 pdb|1NG9|B Chain B, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
          Length = 800

 Score = 26.9 bits (58), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 52  GRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTL 93
           G     + +  DG A K YG A VA +   P++V KR  + L
Sbjct: 753 GDTIAFMHSVQDGAASKSYGLA-VAALAGVPKEVIKRARQKL 793


>pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
           Muts, E38q Mutant, In Complex With A G.T Mismatch
 pdb|1WBD|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
           Muts, E38q Mutant, In Complex With A G.T Mismatch
          Length = 800

 Score = 26.9 bits (58), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 52  GRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTL 93
           G     + +  DG A K YG A VA +   P++V KR  + L
Sbjct: 753 GDTIAFMHSVQDGAASKSYGLA-VAALAGVPKEVIKRARQKL 793


>pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
           Muts, E38t Mutant, In Complex With A G.T Mismatch
 pdb|1WB9|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
           Muts, E38t Mutant, In Complex With A G.T Mismatch
          Length = 800

 Score = 26.9 bits (58), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 52  GRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTL 93
           G     + +  DG A K YG A VA +   P++V KR  + L
Sbjct: 753 GDTIAFMHSVQDGAASKSYGLA-VAALAGVPKEVIKRARQKL 793


>pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
           A C:a Mismatch
 pdb|1OH5|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
           A C:a Mismatch
 pdb|1OH6|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
           An A:a Mismatch
 pdb|1OH6|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
           An A:a Mismatch
 pdb|1OH7|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
           A G:g Mismatch
 pdb|1OH7|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
           A G:g Mismatch
 pdb|1OH8|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
           An Unpaired Thymidine
 pdb|1OH8|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
           An Unpaired Thymidine
 pdb|1W7A|A Chain A, Atp Bound Muts
 pdb|1W7A|B Chain B, Atp Bound Muts
 pdb|2WTU|A Chain A, Crystal Structure Of Escherichia Coli Muts In Complex With
           A 16 Basepair Oligo Containing An A.A Mismatch.
 pdb|2WTU|B Chain B, Crystal Structure Of Escherichia Coli Muts In Complex With
           A 16 Basepair Oligo Containing An A.A Mismatch
          Length = 800

 Score = 26.9 bits (58), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 52  GRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTL 93
           G     + +  DG A K YG A VA +   P++V KR  + L
Sbjct: 753 GDTIAFMHSVQDGAASKSYGLA-VAALAGVPKEVIKRARQKL 793


>pdb|3GIT|A Chain A, Crystal Structure Of A Truncated Acetyl-Coa Synthase
 pdb|3GIT|B Chain B, Crystal Structure Of A Truncated Acetyl-Coa Synthase
 pdb|3GIT|C Chain C, Crystal Structure Of A Truncated Acetyl-Coa Synthase
 pdb|3GIT|D Chain D, Crystal Structure Of A Truncated Acetyl-Coa Synthase
 pdb|3GIT|E Chain E, Crystal Structure Of A Truncated Acetyl-Coa Synthase
 pdb|3GIT|F Chain F, Crystal Structure Of A Truncated Acetyl-Coa Synthase
          Length = 427

 Score = 26.6 bits (57), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 68  KQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKV 106
           K YG  LVA +      +  R+  T+F   +K+K +++V
Sbjct: 132 KNYGEILVAKMKEEFPAIVDRVQVTIFTDEAKVKEYMEV 170


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,070,251
Number of Sequences: 62578
Number of extensions: 146254
Number of successful extensions: 294
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 25
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)