BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3013
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZV82|RL27_DANRE 60S ribosomal protein L27 OS=Danio rerio GN=rpl27 PE=2 SV=3
Length = 136
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 89/121 (73%), Gaps = 2/121 (1%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
MGK MK GK+V+VL+GRYAGRKAV++K DDGTAD+ Y HALVAGIDRYPRKVT M K
Sbjct: 1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
KRSKIK F+KV NYNHLMPTRY+ P + + +DP K+K R + ++KFEE
Sbjct: 61 KIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 151 K 151
+
Sbjct: 121 R 121
>sp|Q9XSU7|RL27_CANFA 60S ribosomal protein L27 OS=Canis familiaris GN=RPL27 PE=2 SV=3
Length = 136
Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 89/121 (73%), Gaps = 2/121 (1%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
MGK MK GK+VLVL+GRY+GRKAV++K DDGT+D+ Y HALVAGIDRYPRKVT M K
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
KRSKIK F+KV NYNHLMPTRY+ P + + +DP K+K R + ++KFEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 151 K 151
K
Sbjct: 121 K 121
>sp|Q90YU1|RL27_ICTPU 60S ribosomal protein L27 OS=Ictalurus punctatus GN=rpl27 PE=2 SV=3
Length = 136
Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/121 (59%), Positives = 89/121 (73%), Gaps = 2/121 (1%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
MGK MK GK+V+VL+GRYAGRKAV++K DDGTAD+ Y HALV+GIDRYPRKVT M K
Sbjct: 1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVSGIDRYPRKVTATMGKK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
KRSKIK F+KV NYNHLMPTRY+ P + + +DP K+K R + ++KFEE
Sbjct: 61 KVAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTIVNKDVFRDPALKRKARREAKVKFEE 120
Query: 151 K 151
+
Sbjct: 121 R 121
>sp|P61354|RL27_RAT 60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 PE=2 SV=2
Length = 136
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/121 (59%), Positives = 89/121 (73%), Gaps = 2/121 (1%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
MGK MK GK+VLVL+GRY+GRKAV++K DDGT+D+ Y HALVAGIDRYPRKVT M K
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
KRSKIK F+KV NYNHLMPTRY+ P + + +DP K+K R + ++KFEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 151 K 151
+
Sbjct: 121 R 121
>sp|A1XQU5|RL27_PIG 60S ribosomal protein L27 OS=Sus scrofa GN=RPL27 PE=2 SV=1
Length = 136
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/121 (59%), Positives = 89/121 (73%), Gaps = 2/121 (1%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
MGK MK GK+VLVL+GRY+GRKAV++K DDGT+D+ Y HALVAGIDRYPRKVT M K
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
KRSKIK F+KV NYNHLMPTRY+ P + + +DP K+K R + ++KFEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 151 K 151
+
Sbjct: 121 R 121
>sp|P61358|RL27_MOUSE 60S ribosomal protein L27 OS=Mus musculus GN=Rpl27 PE=2 SV=2
Length = 136
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/121 (59%), Positives = 89/121 (73%), Gaps = 2/121 (1%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
MGK MK GK+VLVL+GRY+GRKAV++K DDGT+D+ Y HALVAGIDRYPRKVT M K
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
KRSKIK F+KV NYNHLMPTRY+ P + + +DP K+K R + ++KFEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 151 K 151
+
Sbjct: 121 R 121
>sp|Q4R8Z4|RL27_MACFA 60S ribosomal protein L27 OS=Macaca fascicularis GN=RPL27 PE=2 SV=1
Length = 136
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/121 (59%), Positives = 89/121 (73%), Gaps = 2/121 (1%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
MGK MK GK+VLVL+GRY+GRKAV++K DDGT+D+ Y HALVAGIDRYPRKVT M K
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
KRSKIK F+KV NYNHLMPTRY+ P + + +DP K+K R + ++KFEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 151 K 151
+
Sbjct: 121 R 121
>sp|P61353|RL27_HUMAN 60S ribosomal protein L27 OS=Homo sapiens GN=RPL27 PE=1 SV=2
Length = 136
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/121 (59%), Positives = 89/121 (73%), Gaps = 2/121 (1%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
MGK MK GK+VLVL+GRY+GRKAV++K DDGT+D+ Y HALVAGIDRYPRKVT M K
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
KRSKIK F+KV NYNHLMPTRY+ P + + +DP K+K R + ++KFEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 151 K 151
+
Sbjct: 121 R 121
>sp|P61359|RL27_HIPCM 60S ribosomal protein L27 OS=Hippocampus comes GN=rpl27 PE=2 SV=2
Length = 136
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 88/121 (72%), Gaps = 2/121 (1%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
MGK MK GK+V+VL+GRYAGRKAV++K DDGTAD+ Y HALVAGIDRYPRKVT M K
Sbjct: 1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTAPMGKK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
KRSKIK F+KV NYNHLMPTRY+ P + + +DP K K R + ++KFEE
Sbjct: 61 KIAKRSKIKAFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKSKARREAKVKFEE 120
Query: 151 K 151
+
Sbjct: 121 R 121
>sp|P61355|RL27_CHICK 60S ribosomal protein L27 OS=Gallus gallus GN=RPL27 PE=2 SV=2
Length = 136
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/121 (59%), Positives = 89/121 (73%), Gaps = 2/121 (1%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
MGK MK GK+VLVL+GRY+GRKAV++K DDGT+D+ Y HALVAGIDRYPRKVT M K
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
KRSKIK F+KV NYNHLMPTRY+ P + + +DP K+K R + ++KFEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 151 K 151
+
Sbjct: 121 R 121
>sp|P61357|RL27_CERNI 60S ribosomal protein L27 OS=Cervus nippon GN=RPL27 PE=2 SV=2
Length = 136
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/121 (59%), Positives = 89/121 (73%), Gaps = 2/121 (1%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
MGK MK GK+VLVL+GRY+GRKAV++K DDGT+D+ Y HALVAGIDRYPRKVT M K
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
KRSKIK F+KV NYNHLMPTRY+ P + + +DP K+K R + ++KFEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 151 K 151
+
Sbjct: 121 R 121
>sp|P61356|RL27_BOVIN 60S ribosomal protein L27 OS=Bos taurus GN=RPL27 PE=2 SV=2
Length = 136
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/121 (59%), Positives = 89/121 (73%), Gaps = 2/121 (1%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
MGK MK GK+VLVL+GRY+GRKAV++K DDGT+D+ Y HALVAGIDRYPRKVT M K
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
KRSKIK F+KV NYNHLMPTRY+ P + + +DP K+K R + ++KFEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 151 K 151
+
Sbjct: 121 R 121
>sp|P91914|RL27_CAEEL 60S ribosomal protein L27 OS=Caenorhabditis elegans GN=rpl-27 PE=2
SV=1
Length = 136
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 91/121 (75%), Gaps = 2/121 (1%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
MGKIMK GK+VLVL G+YAGRKAVV+K D+G +D+ Y HA++AGIDRYP KVTK M K
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEK--LQPKELKDPMKKKKIRFQIRMKFEE 150
+KR+K+KPFLKV++Y HL+PTRY+ +K + + LK P KK+K +++ KFEE
Sbjct: 61 KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120
Query: 151 K 151
+
Sbjct: 121 R 121
>sp|P0C2H7|RL27B_YEAST 60S ribosomal protein L27-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL27B PE=1 SV=1
Length = 136
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 84/121 (69%), Gaps = 2/121 (1%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
M K +KAGK+ +V+ GRYAG+K V++K +D+G+ +GHALVAGI+RYP KVTK+
Sbjct: 1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPSKVTKKHGAK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYT--YPDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
KR+KIKPF+KV+NYNHL+PTRYT + + + + P ++++ + ++ FEE
Sbjct: 61 KVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEE 120
Query: 151 K 151
+
Sbjct: 121 R 121
>sp|O74538|RL27B_SCHPO 60S ribosomal protein L27-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl27b PE=3 SV=1
Length = 136
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 80/121 (66%), Gaps = 2/121 (1%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
M KI+K GK+ LV GR+AG+K V+L+ D G+ +GHA+VAG++RYP KVTK M
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTYP--DMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
KRS++KPF+KV+NYNHLMPTRY +++ + P +P ++ + ++ FEE
Sbjct: 61 RIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEE 120
Query: 151 K 151
K
Sbjct: 121 K 121
>sp|Q02984|RL27_PYRST 60S ribosomal protein L27 OS=Pyrobotrys stellata GN=RPL27 PE=2 SV=1
Length = 134
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 85/119 (71%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
M K +K+GK+V+VLSGR+AG+KAV+++ +DDGT+ + YGHALV G+ + PRKVTKR ++
Sbjct: 1 MVKFLKSGKVVVVLSGRFAGKKAVIVRNFDDGTSSRPYGHALVVGLQKEPRKVTKRQSQK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEKLQPKELKDPMKKKKIRFQIRMKFEEK 151
K+S +K F+K +NYNHLMPTRYT + + + ++P KK + R + + EEK
Sbjct: 61 KQAKKSTLKTFIKTVNYNHLMPTRYTLDVDFKGVAAEAQENPTKKVEARKECKKLLEEK 119
>sp|P0C2H6|RL27A_YEAST 60S ribosomal protein L27-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL27A PE=1 SV=1
Length = 136
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 84/121 (69%), Gaps = 2/121 (1%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
M K +KAGK+ +V+ GRYAG+K V++K +D+G+ +GHALVAGI+RYP KVTK+
Sbjct: 1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYT--YPDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
KR+KIKPF+KV+NYNHL+PTRYT + + + + P ++++ + ++ FEE
Sbjct: 61 KVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEE 120
Query: 151 K 151
+
Sbjct: 121 R 121
>sp|O14388|RL27A_SCHPO 60S ribosomal protein L27-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl27a PE=2 SV=2
Length = 136
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 80/121 (66%), Gaps = 2/121 (1%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
M KI+K GK+ L+ GR+AG+K V+L+ D G+ +GHA+VAG++RYP KVTK M
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTYP--DMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
+RS++KPF+KV+NYNHLMPTRY +++ + K+P ++ R ++ FEE
Sbjct: 61 RIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEE 120
Query: 151 K 151
K
Sbjct: 121 K 121
>sp|P0DJ19|RL27_TETTH 60S ribosomal protein L27 OS=Tetrahymena thermophila GN=RPL27 PE=1
SV=1
Length = 144
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 88/122 (72%), Gaps = 4/122 (3%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
M K +K G++V++L GR+AG+KAV++K+ +DGT D+++GH LVAG++R P+KVTKRM
Sbjct: 1 MAKFLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTYP---DMQEKLQPKELKDPMKKKKIRFQIRMKFE 149
+KR+ +KPF+K +N NH+MPTRY+ D +E ++ ++K+ K ++R ++ F
Sbjct: 61 KIQKRTSVKPFIKYVNLNHIMPTRYSVKELCDFKELVKEDKIKNNA-KSEVRDTLKKVFV 119
Query: 150 EK 151
EK
Sbjct: 120 EK 121
>sp|Q55BE6|RL27_DICDI 60S ribosomal protein L27 OS=Dictyostelium discoideum GN=rpl27 PE=3
SV=1
Length = 144
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 70/92 (76%), Gaps = 2/92 (2%)
Query: 35 KIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQ--YGHALVAGIDRYPRKVTKRMNKT 92
K +K G++V++L+G+YAGRKAVV+KT+DD TA K YGH LVAGID+YPR + + M++
Sbjct: 4 KFIKPGRLVILLNGKYAGRKAVVIKTFDDATASKSRPYGHCLVAGIDKYPRSIVRSMSRK 63
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQE 124
KR+ I+ F+KV+NYNH+MPTRY + E
Sbjct: 64 TILKRTAIRSFVKVVNYNHIMPTRYNFEGRDE 95
>sp|Q8LCL3|RL272_ARATH 60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2
SV=2
Length = 135
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 82/120 (68%), Gaps = 1/120 (0%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
M K +K K V++L GRYAG+KAV++K++DDGT+D++YGH LVAG+ +YP KV ++ +
Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTYP-DMQEKLQPKELKDPMKKKKIRFQIRMKFEEK 151
K+S++K F+K++NY HLMPTRYT D++E LK KK + + K EE+
Sbjct: 61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120
>sp|Q9SKX8|RL271_ARATH 60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2
SV=1
Length = 135
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 80/120 (66%), Gaps = 1/120 (0%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
M K MK GK V++L GRY G+KAV++K++DDGT +K+YGH LVAG+ +YP KV ++ +
Sbjct: 1 MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTYP-DMQEKLQPKELKDPMKKKKIRFQIRMKFEEK 151
K+S++K F KV+NY H+MPTRYT D++ + + KK + + KFEE+
Sbjct: 61 KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120
>sp|Q05462|RL27_PEA 60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1
Length = 135
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 81/120 (67%), Gaps = 1/120 (0%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
M K +K K V++L GRYAG+KAV++KT+DDGT +K YGH LVAGI ++P KV K+ +
Sbjct: 1 MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTYP-DMQEKLQPKELKDPMKKKKIRFQIRMKFEEK 151
K+S++K F+K++NY HLMPTRYT D+++ + P L+ KK + + EE+
Sbjct: 61 KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120
>sp|Q9P843|RL27_CANAX 60S ribosomal protein L27 OS=Candida albicans GN=RPL27 PE=2 SV=1
Length = 136
Score = 106 bits (264), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 86/121 (71%), Gaps = 2/121 (1%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
M K +K+GK+ +V+ GRYAG+K V++K +D+GT + HA+VAGI+R P KVTK+M+
Sbjct: 1 MAKFIKSGKVAIVVRGRYAGKKVVIVKPHDEGTKSHPFPHAIVAGIERAPLKVTKKMDAK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYT--YPDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
KR+K+KPF+K++NYNHLMPTRY+ + + + L++P ++++ + ++ FEE
Sbjct: 61 KVTKRTKVKPFVKLVNYNHLMPTRYSLDVESFKSAVTSEALEEPSQREEAKKVVKKAFEE 120
Query: 151 K 151
K
Sbjct: 121 K 121
>sp|P41101|RL27_SOLTU 60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1
Length = 138
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 67/86 (77%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
M K +K K V++L G+YAGRKAV+++ +D+GT D+ YGH LVAGI RYP+KV ++ +
Sbjct: 1 MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYT 118
K+S++K F+K++NYNH+MPTRYT
Sbjct: 61 KAGKKSRVKAFIKLVNYNHIMPTRYT 86
>sp|P51419|RL273_ARATH 60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2
SV=2
Length = 135
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
M K +K K V++L GRYAG+KAV++K++DDG D+ YGH LVAG+ +YP KV ++ +
Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 93 LFKKRSKIKPFLKVLNYNHLMPTRYTYP-DMQEKLQPKELKDPMKKKKIRFQIRMKFEEK 151
K+S++K F+K++NY HLMPTRYT D++E L+ KK + + K EE+
Sbjct: 61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120
>sp|P47911|RL6_MOUSE 60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3
Length = 296
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 11 SEEVP--TLAHSIFPFLFCRHISKMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDG 64
+E+VP L+H PF +H+ ++ + G ++++L+GR+ G++ V LK D G
Sbjct: 126 TEDVPRKLLSHGKKPF--SQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSG 179
>sp|Q58DQ3|RL6_BOVIN 60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3
Length = 287
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 11 SEEVP--TLAHSIFPFLFCRHISKMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDG 64
+E+VP L+H PF +H+ K+ + G I+++L+GR+ G++ V LK G
Sbjct: 117 TEDVPRKLLSHGKKPF--SKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSG 170
>sp|Q2YGT9|RL6_PIG 60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3
Length = 284
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 11 SEEVP--TLAHSIFPFLFCRHISKMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDG 64
+E+VP L+H PF +H+ K+ + G I+++L+GR+ G++ + LK G
Sbjct: 114 TEDVPRKLLSHGKKPF--SKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSG 167
>sp|Q02878|RL6_HUMAN 60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3
Length = 288
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 11 SEEVP--TLAHSIFPFLFCRHISKMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDG 64
+E+VP L+H PF +H+ K+ + G I+++L+GR+ G++ V LK G
Sbjct: 118 TEDVPRKLLSHGKKPF--SQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASG 171
>sp|Q6QMZ4|RL6_CHILA 60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3
Length = 288
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 11 SEEVP--TLAHSIFPFLFCRHISKMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDG 64
+E+VP L+H PF +H+ K+ + G ++++L+GR+ G++ V LK G
Sbjct: 118 TEDVPRKLLSHGKKPF--SQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASG 171
>sp|P21533|RL6_RAT 60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5
Length = 298
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 11 SEEVP--TLAHSIFPFLFCRHISKMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDG 64
+E+VP L+H PF +H+ ++ + G ++++L+GR+ G++ V LK G
Sbjct: 128 TEDVPRKLLSHGKKPF--SQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSG 181
>sp|A4YCT0|RL14E_METS5 50S ribosomal protein L14e OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=rpl14e PE=3 SV=1
Length = 96
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 33/111 (29%)
Query: 36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFK 95
I++ G+I + LSGR AG K V++ D+ LV G P+ ++ K
Sbjct: 3 IIEVGRICVKLSGREAGSKCVIVDIIDN-------NFVLVTG----PKSISG------VK 45
Query: 96 KRSKIKPFLKVLNYNHLMPTRYTYP--------DMQEKLQPKELKDPMKKK 138
+R +N +HL PT T +++ KL+ + L D MK+K
Sbjct: 46 RRR--------VNISHLEPTDKTVEIGKGASDQEVEAKLKEQGLVDFMKEK 88
>sp|Q54D63|RL6_DICDI 60S ribosomal protein L6 OS=Dictyostelium discoideum GN=rpl6 PE=1
SV=1
Length = 236
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 40 GKIVLVLSGRYAGRKAVVLKTYDDG 64
G ++++L+GR+AG++ V LK D G
Sbjct: 94 GTVLIILAGRFAGKRVVALKQLDSG 118
>sp|A4WDU5|MUTS_ENT38 DNA mismatch repair protein MutS OS=Enterobacter sp. (strain 638)
GN=mutS PE=3 SV=1
Length = 853
Score = 32.7 bits (73), Expect = 0.95, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 52 GRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNH 111
G + T DG A K YG A VA + P++V KR + L ++ + P +
Sbjct: 753 GDTIAFMHTVQDGAASKSYGLA-VAALAGVPKEVIKRARQKL-RELESLSPNAAATQVDG 810
Query: 112 -----LMPTRYTYPDMQ--EKLQPKEL 131
LMP T P M+ E L P L
Sbjct: 811 SQMSLLMPAEETSPAMEALENLDPDSL 837
>sp|A4WH36|RL14E_PYRAR 50S ribosomal protein L14e OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=rpl14e PE=3 SV=1
Length = 103
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 25/83 (30%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
M K++ G++V+ + GR AGRKAVV+ D+ + L+ G P+ +T
Sbjct: 1 MVKVIDIGRVVVKVLGREAGRKAVVVDVVDE-------NYVLITG----PKTLTG----- 44
Query: 93 LFKKRSKIKPFLKVLNYNHLMPT 115
K+R +N NH+ PT
Sbjct: 45 -VKRRR--------VNINHIEPT 58
>sp|A3MS76|RL14E_PYRCJ 50S ribosomal protein L14e OS=Pyrobaculum calidifontis (strain
JCM 11548 / VA1) GN=rpl14e PE=3 SV=1
Length = 103
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDD 63
M K++ G++V+ + GR AGRKAVV+ D+
Sbjct: 1 MVKVIDVGRVVVKVLGREAGRKAVVVDIVDE 31
>sp|B1YA63|RL14E_PYRNV 50S ribosomal protein L14e OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=rpl14e PE=3 SV=1
Length = 103
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 25/83 (30%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
M K++ G++V+ + GR AGRKAVV+ D+ + ++ G P+++T
Sbjct: 1 MVKVIDVGRVVVKVLGREAGRKAVVVDIVDE-------NYVVITG----PKQLTG----- 44
Query: 93 LFKKRSKIKPFLKVLNYNHLMPT 115
++R +N NH+ PT
Sbjct: 45 -VRRRR--------VNVNHIEPT 58
>sp|Q8ZYB4|RL14E_PYRAE 50S ribosomal protein L14e OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rpl14e PE=3 SV=1
Length = 103
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 25/83 (30%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
M K++ G++V+ + GR AGRKAVV+ D+ + ++ G P+ +T
Sbjct: 1 MVKVIDIGRVVVKVLGREAGRKAVVVDIVDE-------NYVVITG----PKPITG----- 44
Query: 93 LFKKRSKIKPFLKVLNYNHLMPT 115
K+R +N NH+ PT
Sbjct: 45 -VKRRR--------VNINHIEPT 58
>sp|Q3JF36|RECF_NITOC DNA replication and repair protein RecF OS=Nitrosococcus oceani
(strain ATCC 19707 / NCIMB 11848) GN=recF PE=3 SV=1
Length = 363
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 68 KQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIK---PFLKVLNYNHLM 113
KQ G + AG++ P R+NK KKRS++ P L + +Y+H++
Sbjct: 76 KQVGGSHTAGVEFGPAGFRARINKDTVKKRSQLATQLPLLYMSSYSHVV 124
>sp|C4ZBS5|RS3_EUBR3 30S ribosomal protein S3 OS=Eubacterium rectale (strain ATCC 33656
/ VPI 0990) GN=rpsC PE=3 SV=1
Length = 218
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 31 SKMGKIMKAG--KIVLVLSGRYAGRKAVVLKTYDDGT-------ADKQYGHA 73
S MG+ MKAG I SGR G +TY+DGT AD YG A
Sbjct: 135 SCMGRAMKAGVKGIKTTCSGRLGGADMARTETYNDGTTPLQTIRADIDYGFA 186
>sp|A1RTL6|RL14E_PYRIL 50S ribosomal protein L14e OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=rpl14e PE=3 SV=1
Length = 103
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 25/83 (30%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
M K++ G++V+ + GR AGRKAVV+ D+ + ++ G P+++T
Sbjct: 1 MVKVIDIGRVVVKVLGREAGRKAVVVDIVDE-------NYVVITG----PKQLTG----- 44
Query: 93 LFKKRSKIKPFLKVLNYNHLMPT 115
++R +N NH+ PT
Sbjct: 45 -VRRRR--------VNINHIEPT 58
>sp|Q1LTC7|RL24_BAUCH 50S ribosomal protein L24 OS=Baumannia cicadellinicola subsp.
Homalodisca coagulata GN=rplX PE=3 SV=1
Length = 104
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 7/37 (18%)
Query: 43 VLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGID 79
V+VL+G+Y G++ +V+ Y G A+V+GI+
Sbjct: 11 VIVLTGKYKGKRGIVIAIYS-------LGKAIVSGIN 40
>sp|Q9YDD7|RL14E_AERPE 50S ribosomal protein L14e OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rpl14e PE=3 SV=2
Length = 100
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDD 63
M K+++ G+I + GR AGRK V++ D+
Sbjct: 1 MAKVVEVGRICVKTRGREAGRKCVIVDIIDE 31
>sp|O29823|Y426_ARCFU Uncharacterized protein AF_0426 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0426 PE=4 SV=1
Length = 312
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 59 KTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTL-FKKRSKIKPFLKVLNYNHLMPTRY 117
+ +DD K L+A DR K+ +++N+ + ++P KV + ++ +
Sbjct: 48 RKFDDFMEGKAEVDELMAEADRLEEKLNEQLNRNFGYLHELGLEPHAKVAFVSRILSRGF 107
Query: 118 TYPDMQ 123
YPD+Q
Sbjct: 108 VYPDVQ 113
>sp|Q3SLN8|RL24_THIDA 50S ribosomal protein L24 OS=Thiobacillus denitrificans (strain
ATCC 25259) GN=rplX PE=3 SV=1
Length = 107
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Query: 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRY 81
M +I K+ + V++L+G+ G++ VL+ DD GH +V G++R
Sbjct: 1 MARIRKSDQ-VIILAGKDKGKRGTVLRVLDD-------GHLVVEGVNRV 41
>sp|Q6D8C1|MUTS_ERWCT DNA mismatch repair protein MutS OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=mutS
PE=3 SV=1
Length = 854
Score = 29.3 bits (64), Expect = 8.8, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 40 GKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTL 93
G + + L R G + + DG A K YG A VA + P++V KR + L
Sbjct: 743 GVVNVHLDAREHGDTIAFMHSVQDGAASKSYGLA-VAALAGVPKEVIKRARQKL 795
>sp|C6DAK6|MUTS_PECCP DNA mismatch repair protein MutS OS=Pectobacterium carotovorum
subsp. carotovorum (strain PC1) GN=mutS PE=3 SV=1
Length = 854
Score = 29.3 bits (64), Expect = 8.9, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 40 GKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTL 93
G + + L R G + + DG A K YG A VA + P++V KR + L
Sbjct: 743 GVVNVHLDAREHGDTIAFMHSVQDGAASKSYGLA-VAALAGVPKEVIKRARQKL 795
>sp|Q8RFK2|MUTS_FUSNN DNA mismatch repair protein MutS OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=mutS PE=3 SV=1
Length = 896
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 52 GRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTL 93
G+ V L+ G ADK YG VA + P++V R NK L
Sbjct: 777 GKNVVFLREIVKGGADKSYGIE-VARLSGVPKEVLNRSNKIL 817
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,336,974
Number of Sequences: 539616
Number of extensions: 2210843
Number of successful extensions: 5596
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 5538
Number of HSP's gapped (non-prelim): 62
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)