Query psy3013
Match_columns 151
No_of_seqs 113 out of 337
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 23:16:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3013.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3013hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3izc_a 60S ribosomal protein R 100.0 9.9E-61 3.4E-65 370.9 -9.6 119 33-151 1-121 (136)
2 3iz5_a 60S ribosomal protein L 100.0 1.1E-60 3.8E-65 370.6 -10.8 119 33-151 1-121 (136)
3 4a18_N RPL27, ribosomal protei 100.0 4.1E-55 1.4E-59 342.0 6.5 118 33-151 1-121 (144)
4 4a18_E RPL6; ribosome, eukaryo 99.9 8.2E-27 2.8E-31 189.1 4.7 97 10-133 20-119 (191)
5 2joy_A 50S ribosomal protein L 99.8 8E-20 2.7E-24 132.9 5.9 64 33-122 1-64 (96)
6 3iz5_N 60S ribosomal protein L 99.8 3.6E-19 1.2E-23 137.5 5.5 62 34-124 4-65 (134)
7 3izc_G 60S ribosomal protein R 99.7 8.3E-19 2.8E-23 140.8 4.0 110 10-149 11-123 (176)
8 3iz5_G 60S ribosomal protein L 99.7 2.5E-18 8.4E-23 141.9 5.0 110 10-149 52-164 (219)
9 3izc_N 60S ribosomal protein R 99.6 3.1E-16 1.1E-20 121.7 6.2 64 34-124 12-75 (138)
10 4a18_F RPL14; ribosome, eukary 99.6 1.7E-15 5.8E-20 116.1 6.3 62 34-124 4-66 (126)
11 3j21_5 50S ribosomal protein L 99.6 4.4E-15 1.5E-19 106.0 5.8 62 36-123 3-64 (83)
12 2zjr_R 50S ribosomal protein L 92.7 0.088 3E-06 39.2 3.4 40 36-81 15-54 (115)
13 3r8s_U 50S ribosomal protein L 92.3 0.14 4.7E-06 37.5 3.9 39 36-81 3-41 (102)
14 3j21_U 50S ribosomal protein L 92.0 0.14 4.7E-06 38.6 3.8 40 36-81 45-84 (121)
15 1vq8_T 50S ribosomal protein L 91.6 0.17 5.8E-06 38.1 3.9 39 36-80 42-80 (120)
16 2zkr_t 60S ribosomal protein L 91.6 0.15 5.2E-06 39.5 3.7 39 36-80 48-87 (145)
17 3v2d_Y 50S ribosomal protein L 91.4 0.14 4.9E-06 37.9 3.2 40 36-81 6-45 (110)
18 2do3_A Transcription elongatio 91.0 0.16 5.5E-06 35.1 2.9 33 32-64 13-45 (69)
19 3u5e_Y L33, YL33, 60S ribosoma 89.3 0.32 1.1E-05 37.0 3.7 40 36-81 49-88 (127)
20 4a17_S RPL26, 60S ribosomal pr 88.7 0.43 1.5E-05 36.7 4.1 39 37-81 49-87 (135)
21 3iz5_Y 60S ribosomal protein L 88.7 0.38 1.3E-05 37.6 3.8 40 36-81 48-87 (150)
22 2ftc_N Mitochondrial ribosomal 88.5 0.53 1.8E-05 34.0 4.1 35 41-81 2-36 (96)
23 3bbo_W Ribosomal protein L24; 80.8 0.25 8.4E-06 40.0 -0.6 40 37-82 69-108 (191)
24 2ckk_A KIN17; beta barrel, rib 63.0 4.8 0.00016 29.9 2.7 25 38-62 72-96 (127)
25 1nz9_A Transcription antitermi 51.0 15 0.0005 23.0 3.2 27 37-63 5-31 (58)
26 3p8b_B Transcription antitermi 38.4 37 0.0013 24.8 4.1 30 35-64 90-119 (152)
27 3kbg_A 30S ribosomal protein S 35.2 23 0.00079 28.8 2.7 24 37-60 139-162 (213)
28 3j20_E 30S ribosomal protein S 32.9 27 0.00091 28.9 2.8 24 37-60 179-202 (243)
29 2e6z_A Transcription elongatio 32.3 26 0.0009 22.4 2.2 28 36-63 7-34 (59)
30 2xzm_W 40S ribosomal protein S 30.0 45 0.0016 27.9 3.7 22 38-59 178-199 (260)
31 3iz6_D 40S ribosomal protein S 28.7 34 0.0012 28.7 2.8 24 37-60 175-198 (265)
32 2jvv_A Transcription antitermi 28.2 50 0.0017 24.6 3.4 28 36-63 127-154 (181)
33 3u5c_E RP5, S7, YS6, 40S ribos 23.4 44 0.0015 28.0 2.5 24 37-60 175-198 (261)
34 2e70_A Transcription elongatio 23.0 72 0.0025 21.7 3.1 26 38-63 19-44 (71)
35 2q62_A ARSH; alpha/beta, flavo 22.3 37 0.0013 26.9 1.8 43 1-48 1-43 (247)
No 1
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=100.00 E-value=9.9e-61 Score=370.87 Aligned_cols=119 Identities=47% Similarity=0.834 Sum_probs=92.5
Q ss_pred hhcceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeeccee
Q psy3013 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHL 112 (151)
Q Consensus 33 m~k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHl 112 (151)
|++||+||+|||||+|||||+|||||+++||||+||||+|||||||||||++||++||+++++|||+||||||+||||||
T Consensus 1 M~Kf~kpGkVvivl~GryaGkKaVivk~~d~gt~d~py~halVaGIdryP~kvt~~Mgkkki~KrskiK~FvKv~NynHl 80 (136)
T 3izc_a 1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHL 80 (136)
T ss_dssp ----CCCCCCCBCCCSSSSCCBCBCCCCSSSCSCCSSSCCSCCBCCSSSSCCCCCCSSSCCCCCCTTHHHHHHHHHHHHH
T ss_pred CCccccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEecccCChhhhhccCHHHHHhhhhceeeeEEEeccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeceeecCCCC-CccCcc-cCCchhhHHHHHHHHhhhccC
Q psy3013 113 MPTRYTYPDMQE-KLQPKE-LKDPMKKKKIRFQIRMKFEEK 151 (151)
Q Consensus 113 mpTRY~vdi~~d-~~v~~~-fk~~~~kk~akk~~k~~Feer 151 (151)
|||||+||++++ ++|++| |+||++|++|+++++..||||
T Consensus 81 mPTRy~vdi~~~K~~v~~d~~~dp~~k~~a~~~~k~~feer 121 (136)
T 3izc_a 81 LPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEER 121 (136)
T ss_dssp HHHHHHHHHHHHHHHHSCC----------------------
T ss_pred eeeeeeEcccccccccCHHHhcChhHhHHHHHHHHHHHHHH
Confidence 999999999976 679999 999999999999999999996
No 2
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=100.00 E-value=1.1e-60 Score=370.59 Aligned_cols=119 Identities=40% Similarity=0.729 Sum_probs=96.1
Q ss_pred hhcceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeeccee
Q psy3013 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHL 112 (151)
Q Consensus 33 m~k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHl 112 (151)
|++||+||+|||+|+|||||+|||||+++||||+||||+|||||||||||++||++||+++++|||+||||||+||||||
T Consensus 1 M~K~~kpGkVvivl~GryaGkKaVivk~~d~gt~drpy~halVaGIdryP~kvt~~M~kkki~KrskiK~FvKv~NynHl 80 (136)
T 3iz5_a 1 MVKFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHL 80 (136)
T ss_dssp CCSSCCCCCSCCCCCSSSSCCCCBCSCCSSSSSCSCSSCCSCCBCCSTTTTCCCCCCSSSCCCCCHHHHHHHHHHHHHHH
T ss_pred CcccccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEeeccCChhhccCCCHHHhhhhhhceeeeEEEeecce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeceeecCCCCCcc-Ccc-cCCchhhHHHHHHHHhhhccC
Q psy3013 113 MPTRYTYPDMQEKLQ-PKE-LKDPMKKKKIRFQIRMKFEEK 151 (151)
Q Consensus 113 mpTRY~vdi~~d~~v-~~~-fk~~~~kk~akk~~k~~Feer 151 (151)
|||||+||+++++++ ++| |+||++|++|+++++..||||
T Consensus 81 mPTRY~vdi~lK~~v~~~d~~~dp~~k~~a~~~~k~~feer 121 (136)
T 3iz5_a 81 MPTRYTLDVDLKEVAAGPDALATRDKKVAACKSAKARLEDR 121 (136)
T ss_dssp HHHHHHHHHHHHHHHHSCC----------------------
T ss_pred eccceEeecchhheecCHHHhcChhHhHHHHHHHHHHHHHH
Confidence 999999999997667 999 999999999999999999996
No 3
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=100.00 E-value=4.1e-55 Score=342.00 Aligned_cols=118 Identities=45% Similarity=0.814 Sum_probs=114.9
Q ss_pred hhcceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeeccee
Q psy3013 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHL 112 (151)
Q Consensus 33 m~k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHl 112 (151)
|++|++||+|||||+|||||||||||+++|+||+||||+|||||||||||++||++||++++.|||+||||||+||||||
T Consensus 1 M~kf~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdryP~kvt~~m~kkki~kRskiK~FvK~vN~~Hl 80 (144)
T 4a18_N 1 MAKFLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHI 80 (144)
T ss_dssp -CCCCCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEECCCCCCSSCCHHHHHHTTCCEEEEEEEEGGGE
T ss_pred CCccccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccCCchhccccchheeccccccceeEEEEeeeeE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeceee--cCCCCCccCcc-cCCchhhHHHHHHHHhhhccC
Q psy3013 113 MPTRYTY--PDMQEKLQPKE-LKDPMKKKKIRFQIRMKFEEK 151 (151)
Q Consensus 113 mpTRY~v--di~~d~~v~~~-fk~~~~kk~akk~~k~~Feer 151 (151)
|||||+| |++++++|++| |+| ++|++|+++++..||||
T Consensus 81 ~pTry~v~~di~lK~~v~~d~~~~-~~k~~a~~~~k~~feer 121 (144)
T 4a18_N 81 MPTRYSVKELCDFKELVKEDKIKN-NAKSEVRDTLKKVFVEK 121 (144)
T ss_dssp EEEEEECSTTCCHHHHSCHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred EEeeEEeeccCchhhccCHHHhhh-hHhHHHHHHHHHHHHHH
Confidence 9999999 99997779999 999 99999999999999985
No 4
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=99.93 E-value=8.2e-27 Score=189.08 Aligned_cols=97 Identities=24% Similarity=0.322 Sum_probs=85.2
Q ss_pred cCCcccchhhhhhhhhHhHhhhhhhcceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhh
Q psy3013 10 NSEEVPTLAHSIFPFLFCRHISKMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRM 89 (151)
Q Consensus 10 ~~~~~~~~~~~~~~~~f~~~~~~m~k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M 89 (151)
..|++|.--++ +=+|..|..+|+++|+||+|||+|+|||||+|||+||++|+| ++||+| |++||
T Consensus 20 Ptedv~~~~~~--~~~~~~~~~klr~si~pGtVlIiL~Gr~~GKrvV~LKql~sg-------llLVtG----P~~vn--- 83 (191)
T 4a18_E 20 KADDEATPFHR--RQLKKATATKLRNDIAPGTVLILLAGRFRGKRVVFLKQLKSG-------LLLVTG----PYKVN--- 83 (191)
T ss_dssp CCCCSCCCCCC--TTTTTCCCCCCCTTCCTTEEEEECSSTTTTBEEEEEEECTTS-------CEEEEC----CTTTS---
T ss_pred Ccccccccccc--cccccccchhhhccccCCCEEEEeccccCCCEEEEEEecCCC-------eEEEec----Ccccc---
Confidence 45777765444 335889999999999999999999999999999999999998 999999 99999
Q ss_pred hhhhhhhccccccceEeeecceeeeeceeecCC-CC-CccCcc-cCC
Q psy3013 90 NKTLFKKRSKIKPFLKVLNYNHLMPTRYTYPDM-QE-KLQPKE-LKD 133 (151)
Q Consensus 90 ~kkki~KRskiK~FvK~vN~nHlmpTRY~vdi~-~d-~~v~~~-fk~ 133 (151)
++|++++|+||+|||||+|||+ ++ ..+|++ |+.
T Consensus 84 -----------~vplrrvn~~~vi~TstkvDis~vki~~~~d~YF~k 119 (191)
T 4a18_E 84 -----------GVPLKRVNQAYTLSTSTKVDLTGVNTAKFEDDYFGR 119 (191)
T ss_dssp -----------SCCSEEECGGGEEEEEEECCCTTCCGGGCCGGGSCC
T ss_pred -----------CCceEEEeeeeEEeeeeEeecccccccccCHHHhcc
Confidence 5999999999999999999998 55 448887 774
No 5
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=99.79 E-value=8e-20 Score=132.93 Aligned_cols=64 Identities=33% Similarity=0.440 Sum_probs=55.8
Q ss_pred hhcceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeeccee
Q psy3013 33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHL 112 (151)
Q Consensus 33 m~k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHl 112 (151)
|. +++||+||++++||||||++|||+++|+| ++||+|.++++ ..+| |++|++||
T Consensus 1 M~-~v~~GrVv~~~~Gr~~Gk~~VIv~~iD~~-------~vLV~gp~~~~-----------~~~r-------k~~n~khl 54 (96)
T 2joy_A 1 MP-AIEVGRICVKVKGREAGSKCVIVDIIDDN-------FVLVTGPKDIT-----------GVKR-------RRVNILHL 54 (96)
T ss_dssp CC-SSSTTEEEECSSSSTTCCEEEEEEECSSS-------CEEEECCTTTT-----------CCCC-------EEESCSSC
T ss_pred CC-ccccCEEEEEeecCCCCCEEEEEEEeCCC-------EEEEECCcccC-----------CcCC-------EEEchHHE
Confidence 56 89999999999999999999999999998 99999966552 1122 68999999
Q ss_pred eeeceeecCC
Q psy3013 113 MPTRYTYPDM 122 (151)
Q Consensus 113 mpTRY~vdi~ 122 (151)
+||+|.+|++
T Consensus 55 ~~T~~~vdi~ 64 (96)
T 2joy_A 55 EPTDKKIDIQ 64 (96)
T ss_dssp EEEEEECCCC
T ss_pred EEeeEEEeCC
Confidence 9999999975
No 6
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=99.76 E-value=3.6e-19 Score=137.49 Aligned_cols=62 Identities=26% Similarity=0.356 Sum_probs=56.8
Q ss_pred hcceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeecceee
Q psy3013 34 GKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHLM 113 (151)
Q Consensus 34 ~k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHlm 113 (151)
.+|++||+||++++|||||++||||+.+|++ |+||.|++ +|+ +++|++||+
T Consensus 4 ~rfvevGRVV~i~~Gr~aGk~avIV~iiD~~-------rvLVdG~~-v~R---------------------k~~n~khL~ 54 (134)
T 3iz5_N 4 KRFVEIGRVALVNYGKDYGRLVVIVDVVDQN-------RALVDAPD-MVR---------------------CQINFKRLS 54 (134)
T ss_dssp CCSCCSSEEEECSCCSSSCCEEEEEEECSSS-------EEEEEETT-EEE---------------------EEEECTTSE
T ss_pred ccccccCeEEEEeeCCCCCCEEEEEEEcCCC-------eEEEeCCC-ccc---------------------eeechhHeE
Confidence 5799999999999999999999999999998 99999977 555 379999999
Q ss_pred eeceeecCCCC
Q psy3013 114 PTRYTYPDMQE 124 (151)
Q Consensus 114 pTRY~vdi~~d 124 (151)
||+|.+||+..
T Consensus 55 lT~~~v~i~r~ 65 (134)
T 3iz5_N 55 LTDIKIDIKRV 65 (134)
T ss_dssp EEEEECCCCSC
T ss_pred EeCEEEeccCC
Confidence 99999999864
No 7
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=99.73 E-value=8.3e-19 Score=140.78 Aligned_cols=110 Identities=23% Similarity=0.303 Sum_probs=89.6
Q ss_pred cCCcccchhhhhhhhhHhHhhhhhhcceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhh
Q psy3013 10 NSEEVPTLAHSIFPFLFCRHISKMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRM 89 (151)
Q Consensus 10 ~~~~~~~~~~~~~~~~f~~~~~~m~k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M 89 (151)
..|++|.--.+ + .+.|..+++..|.||+|+|+|+|||+|+++|++|++++| .+||+| |..++.
T Consensus 11 Ptedv~~~~~~--~--k~~~~~klR~Si~pGtvlIil~Gr~~GkrvVfLKql~sg-------lllVTG----P~~lNg-- 73 (176)
T 3izc_G 11 PSEDVAALKKT--R--KAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN-------TLLISG----PFKVNG-- 73 (176)
T ss_dssp CCCCCCCCCTT--T--STTSSCSHHHHCCCCSCEECCSSSSSCCCBEEEEESSSS-------SEEEEC----CCSSSC--
T ss_pred Ccccccccccc--c--cccccccccccCCCCCEEEEeccccCCCEEEEEEecCCC-------eEEEec----CceecC--
Confidence 45777764444 2 378999999999999999999999999999999999999 799999 887775
Q ss_pred hhhhhhhccccccceEeeecceeeeeceeecCC-CC-CccCcc-cCCchhhHHHHHHHHhhhc
Q psy3013 90 NKTLFKKRSKIKPFLKVLNYNHLMPTRYTYPDM-QE-KLQPKE-LKDPMKKKKIRFQIRMKFE 149 (151)
Q Consensus 90 ~kkki~KRskiK~FvK~vN~nHlmpTRY~vdi~-~d-~~v~~~-fk~~~~kk~akk~~k~~Fe 149 (151)
+.+.++|++|+++|...|||+ ++ +.++++ |+...+ ++.+++...+|.
T Consensus 74 ------------vplrR~~q~~vIaTstkidis~vki~~l~D~YF~k~k~-~k~k~~E~eiF~ 123 (176)
T 3izc_G 74 ------------VPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKL-TKKEKKEANLFP 123 (176)
T ss_dssp ------------CCCEEESSSSCEECSCCCSSSSCCCSSCCCSSHHHHHH-HHHHHHHHHHHH
T ss_pred ------------CcceeeecceEEeeeeeeecccccccccCHHHhhhhhc-cccccchhhhcc
Confidence 566789999999999999998 44 668888 875433 345666667774
No 8
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=99.72 E-value=2.5e-18 Score=141.88 Aligned_cols=110 Identities=21% Similarity=0.318 Sum_probs=89.5
Q ss_pred cCCcccchhhhhhhhhHhHhhhhhhcceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhh
Q psy3013 10 NSEEVPTLAHSIFPFLFCRHISKMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRM 89 (151)
Q Consensus 10 ~~~~~~~~~~~~~~~~f~~~~~~m~k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M 89 (151)
..|+||.-.++ -+..|..+++..+.||+|||+|+|||+|+++|+|+++|+| .+||+| |..++.
T Consensus 52 Ptedv~~~~~~----~k~~~~~klR~si~pGtVlIil~Gr~~GKrvVfLkqL~sg-------llLVtG----P~~lNg-- 114 (219)
T 3iz5_G 52 PADDVKPRTVS----TRKPHPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLQSG-------LLLITG----PFKING-- 114 (219)
T ss_dssp SSTTHHHHHHH----HHTTHHHHHHHHCSCCSCEECSSSSSSCCEECEEEESSSS-------SEEECC----CCSSSC--
T ss_pred Ccccccccccc----ccCcCcccccccccCCCEEEEeccccCCcEEEEEEecCCC-------eEEEcC----CccccC--
Confidence 46777765444 2478999999999999999999999999999999999999 799999 777775
Q ss_pred hhhhhhhccccccceEeeecceeeeeceeecCC-CC-CccCcc-cCCchhhHHHHHHHHhhhc
Q psy3013 90 NKTLFKKRSKIKPFLKVLNYNHLMPTRYTYPDM-QE-KLQPKE-LKDPMKKKKIRFQIRMKFE 149 (151)
Q Consensus 90 ~kkki~KRskiK~FvK~vN~nHlmpTRY~vdi~-~d-~~v~~~-fk~~~~kk~akk~~k~~Fe 149 (151)
+.+.++|++|+++|...|||+ ++ +.++++ |+....++ .+++...+|+
T Consensus 115 ------------VplrR~~qk~viaTstkIdIs~Vki~~l~D~YF~k~k~~k-~k~~E~eiF~ 164 (219)
T 3iz5_G 115 ------------VPIRRVNQAYVIATSTKVDISKVNVQKFDDKYFAREKKTR-AKKTEGELFE 164 (219)
T ss_dssp ------------CCCEEESSSSCEECSCCCSCSSCCCSSCCCSSHHHHHHHH-HHHHHHHHHH
T ss_pred ------------CccEEechhhEEecceEeecCccccccccHHHHhhhhhcc-cccchhhhhc
Confidence 556689999999999999997 44 668888 87544433 5666666773
No 9
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=99.63 E-value=3.1e-16 Score=121.67 Aligned_cols=64 Identities=23% Similarity=0.491 Sum_probs=55.6
Q ss_pred hcceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeecceee
Q psy3013 34 GKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHLM 113 (151)
Q Consensus 34 ~k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHlm 113 (151)
.+|++||+||++++|||||++||||+.+|+| ++||.| |. +|. +| +.+|++||+
T Consensus 12 ~rfve~GrVV~i~~Gr~aGk~avIV~iiD~~-------rVLVDG----p~-----~gV----~R-------~~~n~khL~ 64 (138)
T 3izc_N 12 WRLVEVGRVVLIKKGQSAGKLAAIVEIIDQK-------KVLIDG----PK-----AGV----PR-------QAINLGQVV 64 (138)
T ss_dssp CCCSSTTEEEECCSCSSSCCEEEEEEECSSS-------EEEEEC----SS-----SSC----CC-------EEEECSSSE
T ss_pred hhhcccCeEEEEeeCCCCCCEEEEEEEecCC-------EEEEEc----CC-----CCc----cc-------ceechhHeE
Confidence 6799999999999999999999999999998 999999 53 121 22 468999999
Q ss_pred eeceeecCCCC
Q psy3013 114 PTRYTYPDMQE 124 (151)
Q Consensus 114 pTRY~vdi~~d 124 (151)
||+|.++|+..
T Consensus 65 lT~~~v~i~r~ 75 (138)
T 3izc_N 65 LTPLTFALPRG 75 (138)
T ss_dssp EEEEECCCCSC
T ss_pred EecEEEEccCC
Confidence 99999999864
No 10
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=99.58 E-value=1.7e-15 Score=116.07 Aligned_cols=62 Identities=19% Similarity=0.362 Sum_probs=56.0
Q ss_pred hcceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeecceee
Q psy3013 34 GKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHLM 113 (151)
Q Consensus 34 ~k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHlm 113 (151)
.+|+++||||+++.|+|||+.||||..+|++ +|||.|.+ +|+. ++|++||+
T Consensus 4 ~rfvevGRVv~i~~G~~aGklavIVdIID~n-------rvLVdGp~-V~Rq---------------------~~n~k~l~ 54 (126)
T 4a18_F 4 NKFVQVGRVVYINYGADKGKLAVIVNIINQN-------RILIDGEH-IVRQ---------------------VIPIRRVH 54 (126)
T ss_dssp CCEEETTEEEEECSSTTTTEEEEEEEEETTT-------EEEEEETT-EEEE---------------------EEEGGGEE
T ss_pred ccceecceEEEEccCCccCCEEEEEEEecCC-------eEEEeCCC-cccc---------------------eeeccceE
Confidence 4699999999999999999999999999998 99999965 5543 79999999
Q ss_pred eeceeec-CCCC
Q psy3013 114 PTRYTYP-DMQE 124 (151)
Q Consensus 114 pTRY~vd-i~~d 124 (151)
||.|.++ |+-.
T Consensus 55 LT~~~v~~i~r~ 66 (126)
T 4a18_F 55 LTKFQIDNVELN 66 (126)
T ss_dssp EEEEECTTCCTT
T ss_pred EcceeccccCCC
Confidence 9999999 8853
No 11
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.55 E-value=4.4e-15 Score=106.02 Aligned_cols=62 Identities=32% Similarity=0.501 Sum_probs=52.2
Q ss_pred ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeecceeeee
Q psy3013 36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHLMPT 115 (151)
Q Consensus 36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHlmpT 115 (151)
+++||+||++++|||||+++|||+++|++ |+||+|.+. +.| + -|.+|.+||.+|
T Consensus 3 ~~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~-------~vlV~g~~~--~~v----------~-------rk~kn~khl~lt 56 (83)
T 3j21_5 3 AIDVGRIAVVIAGRRAGQKVVVVDIIDKN-------FVLVTGAGL--NKV----------K-------RRRMNIKHIEPL 56 (83)
T ss_dssp CCCTTEEEECSSSSSSCCCEEEEEECSSS-------CEEEECCTT--TTC----------C-------CEEESCSSCEEE
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEcCCC-------EEEEECCcc--Ccc----------C-------CeEechHHEEEe
Confidence 89999999999999999999999999998 999999321 011 1 246899999999
Q ss_pred ceeecCCC
Q psy3013 116 RYTYPDMQ 123 (151)
Q Consensus 116 RY~vdi~~ 123 (151)
.+.++++-
T Consensus 57 ~~~i~~~~ 64 (83)
T 3j21_5 57 PQKIDIPR 64 (83)
T ss_dssp EEECCCCS
T ss_pred eEEEECCC
Confidence 99988663
No 12
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=92.68 E-value=0.088 Score=39.16 Aligned_cols=40 Identities=30% Similarity=0.487 Sum_probs=35.4
Q ss_pred ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccC
Q psy3013 36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRY 81 (151)
Q Consensus 36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdry 81 (151)
-++.|--|.|++|++.|+.+-|++.+.+.. .++|-||+..
T Consensus 15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~------~V~VEGvN~~ 54 (115)
T 2zjr_R 15 HFKKGDTVIVLSGKHKGQTGKVLLALPRDQ------KVVVEGVNVI 54 (115)
T ss_dssp SSCTTSEEECCSSSSTTCEEEEEEEETTTT------EEEESSSCBC
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEECCCC------EEEEeCcEeE
Confidence 589999999999999999999999986542 7999998876
No 13
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=92.26 E-value=0.14 Score=37.49 Aligned_cols=39 Identities=26% Similarity=0.501 Sum_probs=33.8
Q ss_pred ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccC
Q psy3013 36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRY 81 (151)
Q Consensus 36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdry 81 (151)
-++.|--|+|++|++.|+...|++.+.++ .++|-||+..
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~-------~ViVeGvN~~ 41 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSSG-------KVIVEGINLV 41 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETTT-------EEEETTCSEE
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeCC-------EEEEeCeEEE
Confidence 36788889999999999999999998773 7999998754
No 14
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=91.97 E-value=0.14 Score=38.56 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=33.8
Q ss_pred ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccC
Q psy3013 36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRY 81 (151)
Q Consensus 36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdry 81 (151)
-++.|--|+|++|+|.|+.+.|++.+.+.. .++|-||+..
T Consensus 45 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~------~V~VEgvn~~ 84 (121)
T 3j21_U 45 PVRVGDKVRIMRGDYKGHEGKVVEVDLKRY------RIYVEGATLR 84 (121)
T ss_dssp ECCSSSEEEECSSSCSSEEEEEEEEETTTT------EEEETTCEEE
T ss_pred ccccCCEEEEeecCCCCcEeEEEEEEecCC------EEEEeCeEEE
Confidence 377898999999999999999999986542 7999998753
No 15
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=91.64 E-value=0.17 Score=38.07 Aligned_cols=39 Identities=28% Similarity=0.355 Sum_probs=34.1
Q ss_pred ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEecccc
Q psy3013 36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDR 80 (151)
Q Consensus 36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdr 80 (151)
-++.|-.|+|++|.|.|+.+-|++.+.+.. .++|-||+.
T Consensus 42 ~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~------~V~VEgvn~ 80 (120)
T 1vq8_T 42 RVNAGDTVEVLRGDFAGEEGEVINVDLDKA------VIHVEDVTL 80 (120)
T ss_dssp ECCTTCEEEECSSTTTTCEEEEEEEETTTT------EEEETTCEE
T ss_pred cccCCCEEEEEecCCCCCEEEEEEEECCCC------EEEEeCeEe
Confidence 488999999999999999999999985542 699999875
No 16
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=91.62 E-value=0.15 Score=39.47 Aligned_cols=39 Identities=21% Similarity=0.425 Sum_probs=34.4
Q ss_pred ceeccEEEEEecccccCce-EEEEEecCCCCCCcccceeEEecccc
Q psy3013 36 IMKAGKIVLVLSGRYAGRK-AVVLKTYDDGTADKQYGHALVAGIDR 80 (151)
Q Consensus 36 ~lkpGkVVIvL~GRyAGkK-aVivk~~D~Gt~dr~y~~aLVaGIdr 80 (151)
-++.|-.|+|++|.+.|+. +.|++.+.+.. .++|-||+.
T Consensus 48 ~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~------~V~VEgvn~ 87 (145)
T 2zkr_t 48 PIRKDDEVQVVRGHYKGQQIGKVVQVYRKKY------VIYIERVQR 87 (145)
T ss_dssp BCCTTCEEEECSSTTTTCCSEEEEEEETTTT------EEEETTCEE
T ss_pred ccCCCCEEEEeecCCCCcceeEEEEEECCCC------EEEEeeeEe
Confidence 4889999999999999999 99999985542 799999886
No 17
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=91.38 E-value=0.14 Score=37.88 Aligned_cols=40 Identities=33% Similarity=0.491 Sum_probs=34.4
Q ss_pred ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccC
Q psy3013 36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRY 81 (151)
Q Consensus 36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdry 81 (151)
-++.|--|+|++|++.|+.+-|++.+.+.. .++|-||+..
T Consensus 6 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~------~ViVEGvN~~ 45 (110)
T 3v2d_Y 6 HVKKGDTVLVASGKYKGRVGKVKEVLPKKY------AVIVEGVNIV 45 (110)
T ss_dssp SCCTTSEEEECSSTTTTCEEEEEEEEGGGT------EEEETTSSEE
T ss_pred ccCCCCEEEEeEcCCCCeEeEEEEEECCCC------EEEEeCEEEE
Confidence 478898999999999999999999987642 7999998864
No 18
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=90.95 E-value=0.16 Score=35.10 Aligned_cols=33 Identities=24% Similarity=0.534 Sum_probs=30.3
Q ss_pred hhhcceeccEEEEEecccccCceEEEEEecCCC
Q psy3013 32 KMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDG 64 (151)
Q Consensus 32 ~m~k~lkpGkVVIvL~GRyAGkKaVivk~~D~G 64 (151)
.++|.+++|-=|-|++|||+|--..||+.-|+-
T Consensus 13 ~LrK~F~~GDHVkVi~G~~~getGlVV~v~~d~ 45 (69)
T 2do3_A 13 ELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENF 45 (69)
T ss_dssp CCCSSCCTTCEEEESSSTTTTCEEEEEEECSSC
T ss_pred HceeeccCCCeEEEeccEEcCceEEEEEEeCCE
Confidence 489999999999999999999999999988763
No 19
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=89.31 E-value=0.32 Score=37.00 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=34.2
Q ss_pred ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccC
Q psy3013 36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRY 81 (151)
Q Consensus 36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdry 81 (151)
-++-|--|+|++|.|.|+.+-|++.+.+.. .++|-||+..
T Consensus 49 ~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~------~V~VEgVn~~ 88 (127)
T 3u5e_Y 49 PIRRDDEVLVVRGSKKGQEGKISSVYRLKF------AVQVDKVTKE 88 (127)
T ss_dssp ECCTTCEEEECSSTTTTCEEEEEEEEGGGT------EEEEETCEEE
T ss_pred cccCCCEEEEeecCCCCccceEEEEECCCC------EEEEeCeEEE
Confidence 377899999999999999999999987542 7999998764
No 20
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=88.70 E-value=0.43 Score=36.66 Aligned_cols=39 Identities=23% Similarity=0.415 Sum_probs=34.0
Q ss_pred eeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccC
Q psy3013 37 MKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRY 81 (151)
Q Consensus 37 lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdry 81 (151)
++-|--|+|++|.|.|+.+-|++.+.... .++|-||+..
T Consensus 49 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~------~V~VEgVn~~ 87 (135)
T 4a17_S 49 VRKDDEVLIVRGKFKGNKGKVTQVYRKKW------AIHVEKISKN 87 (135)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTT------EEEETTCCEE
T ss_pred ccCCCEEEEeecCCCCceeeEEEEEcCCC------EEEEeCeEEE
Confidence 77899999999999999999999987642 7999998864
No 21
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=88.69 E-value=0.38 Score=37.58 Aligned_cols=40 Identities=28% Similarity=0.377 Sum_probs=34.3
Q ss_pred ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccC
Q psy3013 36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRY 81 (151)
Q Consensus 36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdry 81 (151)
-++.|--|+|++|+|.|+.+-|++.+.+.. .++|-||+..
T Consensus 48 ~IkKGD~V~Vi~GkdKGk~GkVl~V~~kk~------~V~VEGVN~~ 87 (150)
T 3iz5_Y 48 PIRKDDEVQVVRGSYKGREGKVVQVYRRRW------VIHVERITRE 87 (150)
T ss_dssp ECCSSSEEEECSSTTTTCEEEEEEEETTTT------EEEETTCEEE
T ss_pred ccCCCCEEEEeecCCCCccceEEEEEcCCC------EEEEeCcEEE
Confidence 477899999999999999999999987642 7999998754
No 22
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=88.45 E-value=0.53 Score=33.96 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=29.3
Q ss_pred EEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccC
Q psy3013 41 KIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRY 81 (151)
Q Consensus 41 kVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdry 81 (151)
--|+|++|++.|+..-|++.+.+.. .++|-|++..
T Consensus 2 D~V~Vi~GkdKGk~GkV~~V~~~~~------~ViVeGvN~~ 36 (96)
T 2ftc_N 2 DTVEILEGKDAGKQGKVVQVIRQRN------WVVVGGLNTH 36 (96)
T ss_pred CEEEEeEcCCCCcEEEEEEEECCCC------EEEEeCCEEE
Confidence 3588999999999999999986542 7999998765
No 23
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=80.85 E-value=0.25 Score=40.03 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=34.5
Q ss_pred eeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCc
Q psy3013 37 MKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYP 82 (151)
Q Consensus 37 lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP 82 (151)
++.|--|+|++|++.|+.+.|++.+.+.. .++|-||+..-
T Consensus 69 IkKGD~V~VIaGkDKGK~GkVl~V~~k~~------rViVEGVN~vk 108 (191)
T 3bbo_W 69 VKVGDTVKVISGGEKGKIGEISKIHKHNS------TVIIKDLNFKT 108 (191)
T ss_dssp SCCSSCEEECSSSSTTCCCSCCCCCSSSC------CCCCSSCCCCC
T ss_pred eecCCEEEEeecCCCCceEEEEEEECCCC------EEEEeCCEEEE
Confidence 88999999999999999999999985542 69999987654
No 24
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=63.04 E-value=4.8 Score=29.87 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=21.6
Q ss_pred eccEEEEEecccccCceEEEEEecC
Q psy3013 38 KAGKIVLVLSGRYAGRKAVVLKTYD 62 (151)
Q Consensus 38 kpGkVVIvL~GRyAGkKaVivk~~D 62 (151)
++|.-|+|+.|.|+|..|.++.--.
T Consensus 72 ~~g~~V~Iv~G~~rG~~g~L~~id~ 96 (127)
T 2ckk_A 72 APGKRILVLNGGYRGNEGTLESINE 96 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEEG
T ss_pred CCCCEEEEEecccCCcEEEEEEEeC
Confidence 6788899999999999999986643
No 25
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=50.96 E-value=15 Score=22.99 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=24.0
Q ss_pred eeccEEEEEecccccCceEEEEEecCC
Q psy3013 37 MKAGKIVLVLSGRYAGRKAVVLKTYDD 63 (151)
Q Consensus 37 lkpGkVVIvL~GRyAGkKaVivk~~D~ 63 (151)
+++|-.|-|+.|-|+|-.+.|.+...+
T Consensus 5 ~~~Gd~V~V~~Gpf~g~~g~v~~v~~~ 31 (58)
T 1nz9_A 5 FREGDQVRVVSGPFADFTGTVTEINPE 31 (58)
T ss_dssp CCTTCEEEECSGGGTTCEEEEEEEETT
T ss_pred cCCCCEEEEeecCCCCcEEEEEEEcCC
Confidence 578999999999999999999987544
No 26
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=38.39 E-value=37 Score=24.77 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=26.8
Q ss_pred cceeccEEEEEecccccCceEEEEEecCCC
Q psy3013 35 KIMKAGKIVLVLSGRYAGRKAVVLKTYDDG 64 (151)
Q Consensus 35 k~lkpGkVVIvL~GRyAGkKaVivk~~D~G 64 (151)
--+++|-.|-|..|-|+|-.|+|.+...+.
T Consensus 90 ~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k 119 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGPFKGQKAKVVKIDESK 119 (152)
T ss_dssp TTCCTTCEEEECSSTTTTCEEEEEEEETTT
T ss_pred ccCCCCCEEEEeeecCCCCEEEEEEEeCCC
Confidence 358899999999999999999999887665
No 27
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=35.19 E-value=23 Score=28.78 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=21.4
Q ss_pred eeccEEEEEecccccCceEEEEEe
Q psy3013 37 MKAGKIVLVLSGRYAGRKAVVLKT 60 (151)
Q Consensus 37 lkpGkVVIvL~GRyAGkKaVivk~ 60 (151)
+..|.+|+|..|+.+|+-++|...
T Consensus 139 f~~G~l~mvtgG~n~GriG~I~~i 162 (213)
T 3kbg_A 139 MQPGNKAYITAGSHVNQTGTISKI 162 (213)
T ss_dssp CSTTCEEEECSSTTTTCEEEEEEE
T ss_pred cCCCCEEEEECCCcceEEEEEEEE
Confidence 467999999999999999998865
No 28
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.90 E-value=27 Score=28.92 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.1
Q ss_pred eeccEEEEEecccccCceEEEEEe
Q psy3013 37 MKAGKIVLVLSGRYAGRKAVVLKT 60 (151)
Q Consensus 37 lkpGkVVIvL~GRyAGkKaVivk~ 60 (151)
+..|.+|+|..|+.+|+-++|...
T Consensus 179 f~~G~l~mvtgG~n~GriG~I~~i 202 (243)
T 3j20_E 179 FEKGAYVFVTQGKNVARKGRIVEI 202 (243)
T ss_dssp CCTTCEEEECSSSSTTCEEEEEEC
T ss_pred ccCCCEEEEECCccceEEEEEEEE
Confidence 457999999999999999988854
No 29
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.28 E-value=26 Score=22.35 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=24.2
Q ss_pred ceeccEEEEEecccccCceEEEEEecCC
Q psy3013 36 IMKAGKIVLVLSGRYAGRKAVVLKTYDD 63 (151)
Q Consensus 36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~ 63 (151)
.+.||-.|-|..|-++|-.++|.....+
T Consensus 7 ~f~~GD~V~V~~Gpf~g~~G~V~evd~e 34 (59)
T 2e6z_A 7 GFQPGDNVEVCEGELINLQGKILSVDGN 34 (59)
T ss_dssp SCCTTSEEEECSSTTTTCEEEECCCBTT
T ss_pred cCCCCCEEEEeecCCCCCEEEEEEEeCC
Confidence 3689999999999999999999876543
No 30
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=30.03 E-value=45 Score=27.86 Aligned_cols=22 Identities=18% Similarity=0.524 Sum_probs=21.0
Q ss_pred eccEEEEEecccccCceEEEEE
Q psy3013 38 KAGKIVLVLSGRYAGRKAVVLK 59 (151)
Q Consensus 38 kpGkVVIvL~GRyAGkKaVivk 59 (151)
..|.+|+|..|+.+|+-++|..
T Consensus 178 e~G~l~mvtgG~n~GriG~I~~ 199 (260)
T 2xzm_W 178 ESGNVCYIQQGNNIGRVGIIQH 199 (260)
T ss_dssp CSSCEEEECSSTTTTCEEEEEE
T ss_pred cCCCEEEEECCccceeEEEEEE
Confidence 8999999999999999999995
No 31
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=28.71 E-value=34 Score=28.69 Aligned_cols=24 Identities=33% Similarity=0.653 Sum_probs=21.2
Q ss_pred eeccEEEEEecccccCceEEEEEe
Q psy3013 37 MKAGKIVLVLSGRYAGRKAVVLKT 60 (151)
Q Consensus 37 lkpGkVVIvL~GRyAGkKaVivk~ 60 (151)
+..|.+|+|..|+.+|+=++|...
T Consensus 175 fe~Gnl~mvtgG~n~GriG~I~~i 198 (265)
T 3iz6_D 175 FDVGNVVMVTGGRNTGRVGVIKNR 198 (265)
T ss_dssp CSTTCEEEECSSSSCSCEEEEEEE
T ss_pred ccCCCEEEEEcCCcceEEEEEEEE
Confidence 457999999999999999998864
No 32
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=28.17 E-value=50 Score=24.62 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=24.9
Q ss_pred ceeccEEEEEecccccCceEEEEEecCC
Q psy3013 36 IMKAGKIVLVLSGRYAGRKAVVLKTYDD 63 (151)
Q Consensus 36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~ 63 (151)
.+.+|-.|-|+.|-|+|-.++|.+..++
T Consensus 127 ~~~~Gd~V~V~~GPf~g~~G~v~~v~~~ 154 (181)
T 2jvv_A 127 LFEPGEMVRVNDGPFADFNGVVEEVDYE 154 (181)
T ss_dssp CCCTTEEEEECSSTTTTEEEEEEEEETT
T ss_pred cCCCCCEEEEeccCCCCcEEEEEEEeCC
Confidence 5779999999999999999999987644
No 33
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=23.42 E-value=44 Score=27.95 Aligned_cols=24 Identities=38% Similarity=0.653 Sum_probs=20.0
Q ss_pred eeccEEEEEecccccCceEEEEEe
Q psy3013 37 MKAGKIVLVLSGRYAGRKAVVLKT 60 (151)
Q Consensus 37 lkpGkVVIvL~GRyAGkKaVivk~ 60 (151)
+..|.+|+|..|+.+|+=++|...
T Consensus 175 fe~Gnl~mvtgG~n~GriG~I~~i 198 (261)
T 3u5c_E 175 FDAGKLVYVTGGRNLGRIGTIVHK 198 (261)
T ss_dssp CCSSCCEEECSSTTTTCBCCCCEE
T ss_pred ccCCCEEEEEcCCcceEEEEEEEE
Confidence 457999999999999997776643
No 34
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.03 E-value=72 Score=21.75 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.2
Q ss_pred eccEEEEEecccccCceEEEEEecCC
Q psy3013 38 KAGKIVLVLSGRYAGRKAVVLKTYDD 63 (151)
Q Consensus 38 kpGkVVIvL~GRyAGkKaVivk~~D~ 63 (151)
-.|+-|.|..|.|.|-..+|....|+
T Consensus 19 liGktV~I~kGpyKG~~GiVkd~t~~ 44 (71)
T 2e70_A 19 LIGQTVRISQGPYKGYIGVVKDATES 44 (71)
T ss_dssp STTSEEEECSSTTTTCEEEEEEECSS
T ss_pred cCCCEEEEeccCCCCeEEEEEECCCC
Confidence 46899999999999999999888776
No 35
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=22.29 E-value=37 Score=26.90 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=23.5
Q ss_pred CCccccccccCCcccchhhhhhhhhHhHhhhhhhcceeccEEEEEecc
Q psy3013 1 MSDTDKYMLNSEEVPTLAHSIFPFLFCRHISKMGKIMKAGKIVLVLSG 48 (151)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~m~k~lkpGkVVIvL~G 48 (151)
|||.|. +...|.++|++++.+-.... ++......-+|++|...
T Consensus 1 ~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~mkIliI~GS 43 (247)
T 2q62_A 1 MSDDDS----SHDLPAANLQQLRLPDSASL-RPAFSTHRPRILILYGS 43 (247)
T ss_dssp -----------CCCTTSCTTTCCCCCGGGG-CCCCCCSCCEEEEEECC
T ss_pred CCCccc----cccCchhhhhcCCCCChhhh-hhhccCCCCeEEEEEcc
Confidence 666663 45689999999998776655 33333334467666544
Done!