Query psy3013
Match_columns 151
No_of_seqs 113 out of 337
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 23:16:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3013.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3013hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2joya1 b.34.5.7 (A:1-96) Ribo 99.7 3.7E-17 2.7E-21 118.3 6.2 65 35-124 2-66 (96)
2 d2gycs1 b.34.5.1 (S:3-101) Rib 94.0 0.018 1.3E-06 40.3 3.3 40 37-83 2-41 (99)
3 d2do3a1 b.34.5.5 (A:462-523) T 93.0 0.032 2.3E-06 36.4 2.9 33 31-63 5-37 (62)
4 d2zjrr1 b.34.5.1 (R:4-113) Rib 93.0 0.035 2.6E-06 39.4 3.4 40 37-82 13-52 (110)
5 d1vqot1 b.34.5.1 (T:1-119) Rib 90.0 0.14 1E-05 36.7 3.9 39 36-80 41-79 (119)
6 d2j01y1 b.34.5.1 (Y:2-102) Rib 89.5 0.016 1.1E-06 40.7 -1.6 42 36-83 5-46 (101)
7 d1nppa2 b.34.5.4 (A:191-248) N 41.6 9.4 0.00068 23.1 2.7 27 37-63 5-31 (58)
8 d1nz9a_ b.34.5.4 (A:) N-utiliz 38.0 15 0.0011 22.1 3.3 27 37-63 5-31 (58)
9 d1x6oa1 b.34.5.2 (A:19-86) Euk 25.3 48 0.0035 20.8 4.2 60 36-123 9-68 (68)
10 d1k47a1 d.14.1.5 (A:1-194) Pho 21.8 22 0.0016 23.9 2.2 17 33-51 1-17 (194)
No 1
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.66 E-value=3.7e-17 Score=118.28 Aligned_cols=65 Identities=31% Similarity=0.471 Sum_probs=57.8
Q ss_pred cceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeecceeee
Q psy3013 35 KIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHLMP 114 (151)
Q Consensus 35 k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHlmp 114 (151)
+++++||||++++||||||+||||+.+|+| ++||+| |..+|. ...+++|++|++|
T Consensus 2 ~~VevGrV~ii~~G~~~GK~~vIvdiid~~-------rvLVdG----P~~~tg--------------V~r~~in~k~l~l 56 (96)
T d2joya1 2 PAIEVGRICVKVKGREAGSKCVIVDIIDDN-------FVLVTG----PKDITG--------------VKRRRVNILHLEP 56 (96)
T ss_dssp CSSSTTEEEECSSSSTTCCEEEEEEECSSS-------CEEEEC----CTTTTC--------------CCCEEESCSSCEE
T ss_pred CceeccEEEEEeecCCCCCEEEEEEEecCC-------eEEEec----ccccCC--------------cccEEEchHHEEe
Confidence 478999999999999999999999999998 899999 887774 3344799999999
Q ss_pred eceeecCCCC
Q psy3013 115 TRYTYPDMQE 124 (151)
Q Consensus 115 TRY~vdi~~d 124 (151)
|.+++|++..
T Consensus 57 T~~~i~i~~~ 66 (96)
T d2joya1 57 TDKKIDIQKG 66 (96)
T ss_dssp EEEECCCCSS
T ss_pred ccEEEEccCC
Confidence 9999998743
No 2
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]}
Probab=94.02 E-value=0.018 Score=40.26 Aligned_cols=40 Identities=25% Similarity=0.523 Sum_probs=34.2
Q ss_pred eeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCch
Q psy3013 37 MKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPR 83 (151)
Q Consensus 37 lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~ 83 (151)
|+.|--|+|++|+..|+.+.|++.+.++ .++|-||+-.-+
T Consensus 2 ikkGD~V~VisGkdKGK~G~V~~V~~~~-------~viVeGvN~~kk 41 (99)
T d2gycs1 2 IRRDDEVIVLTGKDKGKRGKVKNVLSSG-------KVIVEGINLVKK 41 (99)
T ss_dssp CCTTSEEECSSSTTTTCEEEEEEECTTS-------EEEETTCCEECT
T ss_pred ccCCCEEEEeeCCCCCCceEEEEEECCC-------eEEEeCeEEEEE
Confidence 5678899999999999999999998765 699999875543
No 3
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.02 E-value=0.032 Score=36.38 Aligned_cols=33 Identities=24% Similarity=0.588 Sum_probs=29.9
Q ss_pred hhhhcceeccEEEEEecccccCceEEEEEecCC
Q psy3013 31 SKMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDD 63 (151)
Q Consensus 31 ~~m~k~lkpGkVVIvL~GRyAGkKaVivk~~D~ 63 (151)
+.++|.+++|-=|-|++|||+|.-..||+.-++
T Consensus 5 ~~LrK~F~~GDhVkVi~G~~~g~tGlVV~v~~~ 37 (62)
T d2do3a1 5 QELRKYFKMGDHVKVIAGRFEGDTGLIVRVEEN 37 (62)
T ss_dssp CCCCSSCCTTCEEEESSSTTTTCEEEEEEECSS
T ss_pred HHheeccCCCCeEEEeccEEcCccEEEEEEeCC
Confidence 347999999999999999999999999998655
No 4
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=93.00 E-value=0.035 Score=39.41 Aligned_cols=40 Identities=30% Similarity=0.506 Sum_probs=35.0
Q ss_pred eeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCc
Q psy3013 37 MKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYP 82 (151)
Q Consensus 37 lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP 82 (151)
++-|--|+|++|++.|+.+.|++.+.+.. .++|-||+-.-
T Consensus 13 ikkGD~V~VisGkdKGk~G~Vl~V~~~~~------~ViVeGvN~~k 52 (110)
T d2zjrr1 13 FKKGDTVIVLSGKHKGQTGKVLLALPRDQ------KVVVEGVNVIT 52 (110)
T ss_dssp SCTTSEEECCSSSSTTCEEEEEEEETTTT------EEEESSSCBCC
T ss_pred eeCCCEEEEeecCCCCcceEEEEEECCCC------EEEEeCcEEEE
Confidence 77899999999999999999999997653 79999987654
No 5
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=90.04 E-value=0.14 Score=36.71 Aligned_cols=39 Identities=28% Similarity=0.355 Sum_probs=33.7
Q ss_pred ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEecccc
Q psy3013 36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDR 80 (151)
Q Consensus 36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdr 80 (151)
-++.|-.|.|++|.+.|+.+-|++.+.+.. .++|-||+.
T Consensus 41 ~IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~------~V~Vegin~ 79 (119)
T d1vqot1 41 RVNAGDTVEVLRGDFAGEEGEVINVDLDKA------VIHVEDVTL 79 (119)
T ss_dssp ECCTTCEEEECSSTTTTCEEEEEEEETTTT------EEEETTCEE
T ss_pred ceeCCCEEEEeecCCCCCcceEEEEECCCC------EEEEeCcEE
Confidence 478999999999999999999999875542 799999864
No 6
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]}
Probab=89.53 E-value=0.016 Score=40.69 Aligned_cols=42 Identities=31% Similarity=0.484 Sum_probs=35.4
Q ss_pred ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCch
Q psy3013 36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPR 83 (151)
Q Consensus 36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~ 83 (151)
-++.|--|.|++|++.|+.+.|++.+.+.. .++|.|++-.-+
T Consensus 5 kIkkGD~V~VisGkdKGk~G~Vl~V~~~~~------~ViVeGvN~~kk 46 (101)
T d2j01y1 5 HVKKGDTVLVASGKYKGRVGKVKEVLPKKY------AVIVEGVNIVKK 46 (101)
T ss_dssp CSCCSSCEECCSSTTSSCCBSCCCCCCTTC------BCCTTSCCCCCC
T ss_pred EEECCCEEEEeeCCCCCCeEEEEEEECCCC------EEEEEcceEEEE
Confidence 367888999999999999999999997763 699999885443
No 7
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=41.62 E-value=9.4 Score=23.07 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=24.4
Q ss_pred eeccEEEEEecccccCceEEEEEecCC
Q psy3013 37 MKAGKIVLVLSGRYAGRKAVVLKTYDD 63 (151)
Q Consensus 37 lkpGkVVIvL~GRyAGkKaVivk~~D~ 63 (151)
+++|-.|-|++|-|||--|.|.+..++
T Consensus 5 f~~Gd~V~I~~GpF~g~~g~V~~i~~~ 31 (58)
T d1nppa2 5 FEKGDQVRVIEGPFMNFTGTVEEVHPE 31 (58)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEEGG
T ss_pred ccCCCEEEEcccCCCCCEEEEEEEcCC
Confidence 689999999999999999999887655
No 8
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=38.00 E-value=15 Score=22.13 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=24.0
Q ss_pred eeccEEEEEecccccCceEEEEEecCC
Q psy3013 37 MKAGKIVLVLSGRYAGRKAVVLKTYDD 63 (151)
Q Consensus 37 lkpGkVVIvL~GRyAGkKaVivk~~D~ 63 (151)
+++|-.|-|++|-|+|--+.|.+...+
T Consensus 5 F~~Gd~V~I~~GpF~g~~g~V~~i~~~ 31 (58)
T d1nz9a_ 5 FREGDQVRVVSGPFADFTGTVTEINPE 31 (58)
T ss_dssp CCTTCEEEECSGGGTTCEEEEEEEETT
T ss_pred ccCCCEEEEeccCCCCCEEEEEEEcCC
Confidence 689999999999999999999887544
No 9
>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}
Probab=25.26 E-value=48 Score=20.84 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=35.9
Q ss_pred ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeecceeeee
Q psy3013 36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHLMPT 115 (151)
Q Consensus 36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHlmpT 115 (151)
.|+.|..|++ .|+-+-|+...-+-+..+--..|-+.|||=+--+ -+.++.|+
T Consensus 9 ~lkkG~yv~i-----~g~PCkI~~istSk~GKHGhaK~~i~~idIFtgk-----------------------K~~~v~P~ 60 (68)
T d1x6oa1 9 ALKKGGYVCI-----NGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGN-----------------------RLEDQAPS 60 (68)
T ss_dssp GCCTTCEEEE-----TTEEEEEEEEEECCC----CCEEEEEEEETTTCC-----------------------EEEEEEET
T ss_pred eeeECCEEEE-----CCEeeEEEEEeecCCCcccccEEEEEEEEcccCC-----------------------EEEEEccC
Confidence 5788888875 5656666654333222233334667777766433 35788888
Q ss_pred ceeecCCC
Q psy3013 116 RYTYPDMQ 123 (151)
Q Consensus 116 RY~vdi~~ 123 (151)
.-++|++|
T Consensus 61 ~~~v~vP~ 68 (68)
T d1x6oa1 61 THNVEVPF 68 (68)
T ss_dssp TSEEEEEC
T ss_pred CceeecCC
Confidence 88888765
No 10
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}
Probab=21.83 E-value=22 Score=23.86 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=11.7
Q ss_pred hhcceeccEEEEEeccccc
Q psy3013 33 MGKIMKAGKIVLVLSGRYA 51 (151)
Q Consensus 33 m~k~lkpGkVVIvL~GRyA 51 (151)
|..+=-||||+ |.|-||
T Consensus 1 mi~v~apGK~i--L~GE~a 17 (194)
T d1k47a1 1 MIAVKTCGKLY--WAGEYA 17 (194)
T ss_dssp CEEEEEEEEEE--EECTTG
T ss_pred CeEEEeCcEEE--EEeeeE
Confidence 44556799974 678886
Done!