RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3013
         (151 letters)



>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 96

 Score = 40.8 bits (96), Expect = 3e-06
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 26/106 (24%)

Query: 35  KIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLF 94
             ++ G+I + + GR AG K V++   DD          LV G    P+ +T        
Sbjct: 2   PAIEVGRICVKVKGREAGSKCVIVDIIDD-------NFVLVTG----PKDITGVK----- 45

Query: 95  KKRSKIKPFLKVLNYNHLMPTRYTYPDMQEKLQPKELKDPMKKKKI 140
                     + +N  HL PT     D+Q+    +E+K  +++  +
Sbjct: 46  ---------RRRVNILHLEPTDKKI-DIQKGASDEEVKKKLEESNL 81


>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 62

 Score = 26.2 bits (58), Expect = 0.48
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query: 35 KIMKAGKIVLVLSGRYAGRKAVVLKTYDD 63
          K  K G  V V++GR+ G   ++++  ++
Sbjct: 9  KYFKMGDHVKVIAGRFEGDTGLIVRVEEN 37


>g1qd6.1 f.4.2.1 (A:,C:) Outer membrane phospholipase A (OMPLA)
           {Escherichia coli [TaxId: 562]}
          Length = 253

 Score = 27.4 bits (61), Expect = 0.55
 Identities = 7/39 (17%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 110 NHLMPTRYTYPDMQEKLQPKELKDPMKKKKIRFQIRMKF 148
           N+L+ T+ +  + +  +   +  +  +K +++FQ+ + F
Sbjct: 22  NYLIYTQTSDLNKEA-IASYDWAENARKDEVKFQLSLAF 59


>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic
           enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
          Length = 298

 Score = 24.6 bits (53), Expect = 6.5
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 108 NYNHLMPTRYTYPDMQEKLQ 127
           +YN  +   YT+P+   K++
Sbjct: 279 DYNCFVADSYTWPEEAMKVK 298


>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 104

 Score = 23.3 bits (50), Expect = 10.0
 Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 2/24 (8%)

Query: 128 PKEL--KDPMKKKKIRFQIRMKFE 149
              L  K+P K     F++ MK E
Sbjct: 17  SATLFKKEPPKPPLNNFKVGMKLE 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 571,662
Number of extensions: 26270
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 12
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.8 bits)