BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3014
(570 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 135/235 (57%), Gaps = 5/235 (2%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
A KEK GN+ YK + F+EA+ HYNKA E DIT+ NN AA +E+ EY+ I
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLND 63
Query: 307 KIEN----RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISXXXX 362
+E RAD+K+I+K+ RIGN Y K+ D K Y++KS++EHRT +I T +
Sbjct: 64 AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEK 123
Query: 363 XXXXXXXXAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422
AY++P KAEEA+ G E F + +AVK YTE I R P+D + YSNRAA
Sbjct: 124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAAL 183
Query: 423 TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477
KL +F + DC ++ DP F++ +IRK +++ + A++ + A DA
Sbjct: 184 AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 20/172 (11%)
Query: 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKA---LEDA-EK 70
K +GN +A F EAIE Y++A +L + +NR+AA ++G YE A L DA E+
Sbjct: 9 KAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ 67
Query: 71 TISLKPDW---PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEM 127
++ D+ K ++R G+A LG K++I Y++ L + + + +RN E
Sbjct: 68 GREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL----TEHRTADILTKLRNAE- 122
Query: 128 NDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-----PSYVQMIKEIQKD 174
++ + + A + +P + +L+ + SD +Y +MIK +D
Sbjct: 123 KELKKAE--AEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 30 AIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89
A++AY+E IK + +SNR+AA AK ++ +A+ D K I P++ + Y RK +A
Sbjct: 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 217
Query: 90 SYLGRYKESIST 101
+ Y ++ T
Sbjct: 218 IAVKEYASALET 229
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 86/120 (71%)
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
++P A K +GNE F+ G Y A+K YTEAI RNP D K YSNRAACYTKL F L L
Sbjct: 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLAL 70
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIA 492
KDCE C++L+P F+KG+ RK L+ M+ +KA+D Y+KAL+LD+S EA +GY++C +A
Sbjct: 71 KDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 64/97 (65%)
Query: 13 LLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTI 72
++K+KGN Q ++ +A++ Y+EAIK + + L+SNR+A + K ++ AL+D E+ I
Sbjct: 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI 77
Query: 73 SLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLD 109
L+P + KGY+RK +AL + Y +++ Y++ L LD
Sbjct: 78 QLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN 310
K GNE ++K ++ +A+ HY +A++ +P D +N AA Y + E+ ++ + I+
Sbjct: 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 79
Query: 311 RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345
F K R + M+D+ A ++K++
Sbjct: 80 EPTF---IKGYTRKAAALEAMKDYTKAMDVYQKAL 111
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 138 bits (348), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 89/113 (78%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V+ LK+KGN AL N +A++ YSEAIKLD NH+L+SNRSAA+AK+G+Y+KA ED
Sbjct: 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV 122
KT+ LKPDW KGYSRK +AL +L R++E+ TYEEGLK + NN Q+KE ++++
Sbjct: 63 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%)
Query: 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCL 439
E KE+GN+ G DA++ Y+EAI +P + YSNR+A Y K + +D +
Sbjct: 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65
Query: 440 KLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485
L P + KG+ RK L+ + + +A YE+ L+ +A+N + EG
Sbjct: 66 DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 111
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN 310
KE GN+A N ++AL Y++A++ DP + +N +A Y ++ +Y + E + ++
Sbjct: 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 311 RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM-SEHRTPEIR 354
+ D+ K R + + ++ AK +E+ + E P+++
Sbjct: 68 KPDW---GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLK 109
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 82/119 (68%)
Query: 371 AYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDL 430
AYI+P A+E K +GNE FK G Y A++ Y EA+ R+P++ YSNRAAC TKL F
Sbjct: 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQR 65
Query: 431 GLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
L DC+TC++LD KF+KG+IRK L M++ SKA AYE AL++D SN EA EG R C
Sbjct: 66 ALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 66/108 (61%)
Query: 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL 74
K+KGN + ++ A+ Y+EA+K D N IL+SNR+A K +++AL+D + I L
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76
Query: 75 KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV 122
+ KGY RK + L + + ++ YE+ L++DP+NE+ +E +++
Sbjct: 77 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
A++EK GNE +KK ++ A+ HYN+AV+ DP + +N AA + E+ + ++
Sbjct: 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345
I R D K I K R C M +W A+ +E ++
Sbjct: 73 CI--RLDSKFI-KGYIRKAACLVAMREWSKAQRAYEDAL 108
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 83/113 (73%), Gaps = 4/113 (3%)
Query: 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQY 304
+ A KEKELGN+AYKKK+F+ AL HY+KA E DPT++T+ N AAVYFE+ +Y++C E
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 305 IQKI----ENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEI 353
+ I ENR D++ IAKA RIGN Y K E +K+A ++ KS++EHRTP++
Sbjct: 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDV 114
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL 74
K+ GN A + +F A++ Y +A +LD TN +N++A + ++G+Y K E EK I +
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 75 ----KPDW---PKGYSRKGSALSYLGRYKESISTYEEGL 106
+ D+ K Y+R G++ +YK++I Y + L
Sbjct: 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 382 KERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441
KE GN+ +K + A+K Y +A +P + Y +N+AA Y + ++ + CE +++
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 442 D-------PKFLKGWIRKGKILQGMQQQSKAIDAYEKAL 473
+ K + R G ++ AI Y K+L
Sbjct: 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 83/113 (73%), Gaps = 4/113 (3%)
Query: 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQY 304
+ A KEKELGN+AYKKK+F+ AL HY+KA E DPT++T+ N AAVYFE+ +Y++C E
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 305 IQKI----ENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEI 353
+ I ENR D++ IAKA RIGN Y K E +K+A ++ KS++EHRTP++
Sbjct: 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDV 114
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL 74
K+ GN A + +F A++ Y +A +LD TN +N++A + ++G+Y K E EK I +
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 75 ----KPDW---PKGYSRKGSALSYLGRYKESISTYEEGL 106
+ D+ K Y+R G++ +YK++I Y + L
Sbjct: 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 382 KERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441
KE GN+ +K + A+K Y +A +P + Y +N+AA Y + ++ + CE +++
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 442 D-------PKFLKGWIRKGKILQGMQQQSKAIDAYEKAL 473
+ K + R G ++ AI Y K+L
Sbjct: 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 81/113 (71%), Gaps = 6/113 (5%)
Query: 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYI 305
+A EK+LGN AYK+K+FE+A HY+KA+E DP++ITF NN AAVYFE K++ +C+ Q+
Sbjct: 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECV-QFC 65
Query: 306 QKI-----ENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEI 353
+K E RAD+KLIAKA+ R GN ++K D A +F +S+SE R PE+
Sbjct: 66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPEL 118
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL 74
KD GNAA + +F +A Y +AI+LD +N ++N++A + +E + + ++ EK + +
Sbjct: 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71
Query: 75 KPDWPKGYSRKGSALSYLG 93
+ Y A+S G
Sbjct: 72 GRETRADYKLIAKAMSRAG 90
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 371 AYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDL 430
A D AE K+ GN +K + A Y +AI +P + +Y+N+AA Y + F
Sbjct: 3 AMTDAAIAE--KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60
Query: 431 GLKDCETCLKL------DPKFL-KGWIRKGKILQGMQQQSKAIDAYEKAL 473
++ CE +++ D K + K R G Q S A+ + ++L
Sbjct: 61 CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 83/113 (73%), Gaps = 4/113 (3%)
Query: 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQY 304
+ A KEKELGN+AYKKK+F+ AL HY+KA E DPT++T+ N AAVYFE+ +Y++C E
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELC 61
Query: 305 IQKI----ENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEI 353
+ I ENR D+++IA A RIGN Y K E +K+A ++ KS++EHRTP++
Sbjct: 62 EKAIEVGRENREDYRMIAYAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPKV 114
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL 74
K+ GN A + +F A++ Y +A +LD TN N++A + ++G+Y K E EK I +
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 75 ----KPDW---PKGYSRKGSALSYLGRYKESISTYEEGL 106
+ D+ Y+R G++ +YK++I Y + L
Sbjct: 68 GRENREDYRMIAYAYARIGNSYFKEEKYKDAIHFYNKSL 106
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 382 KERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441
KE GN+ +K + A+K Y +A +P + Y N+AA Y + ++ + CE +++
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEV 67
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 71/111 (63%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
E LK +GN ++ NF A+ Y +AI+L+ N + F NR+AA++K GNY A++D E
Sbjct: 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 70
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIK 120
+ I + P + K Y R G ALS L ++ E+++ Y++ L+LDP+NE K +K
Sbjct: 71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK 121
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%)
Query: 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLK 433
D +AE K GNE K + AV Y +AI NP + Y+ NRAA Y+KL + ++
Sbjct: 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67
Query: 434 DCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479
DCE + +DP + K + R G L + + +A+ Y+KALELD N
Sbjct: 68 DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 240 LTDEQRSAKKE--KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEY 297
L E+ SA+ E K GNE K +NFE A+ Y KA+E +P + + N AA Y + Y
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 298 DQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345
++ + I + +KA R+G + A Y++K++
Sbjct: 63 AGAVQDCERAICIDPAY---SKAYGRMGLALSSLNKHVEAVAYYKKAL 107
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 265 EALAHYNKAVEFDPTDITFQNNI 287
EA+A+Y KA+E DP + T+++N+
Sbjct: 98 EAVAYYKKALELDPDNETYKSNL 120
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 59/102 (57%)
Query: 376 VKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDC 435
+KAEEA+ G E F + +AVK YTE I R P+D + YSNRAA KL +F + DC
Sbjct: 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61
Query: 436 ETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477
++ DP F++ +IRK +++ + A++ + A DA
Sbjct: 62 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 103
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 30 AIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89
A++AY+E IK + +SNR+AA AK ++ +A+ D K I P++ + Y RK +A
Sbjct: 23 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82
Query: 90 SYLGRYKESIST 101
+ Y ++ T
Sbjct: 83 IAVKEYASALET 94
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 72 ISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN 111
I P+ +GYS + +AL+ L + E+I+ + ++ DPN
Sbjct: 31 IKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 71/113 (62%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
K+ GNA + ++ +AIE Y +A++LD N + N A+ K+G+Y+KA+E +K +
Sbjct: 12 WKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALE 71
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 126
L P+ K + R+G+A G Y+++I Y++ L+LDPNN + K+ + + + ++
Sbjct: 72 LDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQ 124
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 373 IDPVKAEEA-KERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
+DP + EA K GN +K G Y A++ Y +A+ +P++ + N Y K +
Sbjct: 3 MDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKA 62
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
++ + L+LDP K W R+G KAI+ Y+KALELD +NA+A
Sbjct: 63 IEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCI 301
D SA+ K LGN YK+ ++++A+ +Y KA+E DP + + N+ Y+++ +Y + I
Sbjct: 4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAI 63
Query: 302 EQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345
E Y + +E + AKA R GN Y K D++ A ++K++
Sbjct: 64 EYYQKALELDPN---NAKAWYRRGNAYYKQGDYQKAIEDYQKAL 104
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 42 GTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESIST 101
G + + N A+ K+G+Y+KA+E +K + L P+ + G+A G Y+++I
Sbjct: 6 GNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEY 65
Query: 102 YEEGLKLDPNN 112
Y++ L+LDPNN
Sbjct: 66 YQKALELDPNN 76
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LGN YK+ ++++A+ +Y KA+E DP + Y+++ +Y + IE Y + +E
Sbjct: 49 LGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDP 108
Query: 313 DFKLIAKALQRIGNCYKKM 331
+ AKA Q +GN +K
Sbjct: 109 N---NAKAKQNLGNAKQKQ 124
>pdb|2LLW|A Chain A, Solution Structure Of The Yeast Sti1 Dp2 Domain
Length = 71
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 44/60 (73%)
Query: 496 NPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIASKIQKLVNSGLI 555
PEE +RAM DPEV I++DP M+ IL+Q Q +P AL +H+KNPE+ KIQ L+ +G+I
Sbjct: 8 TPEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQTLIAAGII 67
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 73/122 (59%), Gaps = 3/122 (2%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK +GNAA+ + +AI+ Y++A+ + N I SNR+AA++ G +EKA EDAE
Sbjct: 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV 73
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN--NEQMKEAIKDVRNQEMNDMN 131
+ P + K +SR G A + YK + YE+G++ + N ++ MK ++ + +++ + N
Sbjct: 74 VDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK-RKIEEAN 132
Query: 132 RG 133
RG
Sbjct: 133 RG 134
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%)
Query: 382 KERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441
K GN +Y+ A+ YT+A++ P +P Y SNRAA Y+ + +D E +
Sbjct: 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 442 DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480
DPK+ K W R G M A +AYEK +E + +
Sbjct: 75 DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKI 308
K K GN A +K + +A+ Y +A+ P + + +N AA Y ++++ E ++
Sbjct: 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAED--AEL 70
Query: 309 ENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345
D K +KA R+G M D+K AK +EK +
Sbjct: 71 ATVVDPKY-SKAWSRLGLARFDMADYKGAKEAYEKGI 106
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%)
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCE 436
+AEE K + N+ FK Y +A+K Y++AI NP + YY NR+ Y + + L D
Sbjct: 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDAT 64
Query: 437 TCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAV 493
++LD K++KG+ R+ + + A+ YE +++ + +A Y++C+ V
Sbjct: 65 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 121
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK + N +A ++ AI+ YS+AI+L+ +N I + NRS A+ + Y AL DA + I
Sbjct: 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 68
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRG 133
L + KGY R+ ++ LG+++ ++ YE +K+ P+++ K ++ QE N + +
Sbjct: 69 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK-----MKYQECNKIVKQ 123
Query: 134 DPF 136
F
Sbjct: 124 KAF 126
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCE 436
+AEE K + N+ FK Y +A+K Y++AI NP + YY NR+ Y + + L D
Sbjct: 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDAT 71
Query: 437 TCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSN 496
++LD K++KG+ R+ + + A+ YE +++ + +A Y++C+ V
Sbjct: 72 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQK 131
Query: 497 PEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEI 542
E + I D R +++ + + + D P++
Sbjct: 132 AFE-----------RAIAGDEHKRSVVDSLDIESMTIEDEYSGPKL 166
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK + N +A ++ AI+ YS+AI+L+ +N I + NRS A+ + Y AL DA + I
Sbjct: 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 75
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRG 133
L + KGY R+ ++ LG+++ ++ YE +K+ P+++ K ++ QE N + +
Sbjct: 76 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK-----MKYQECNKIVKQ 130
Query: 134 DPF 136
F
Sbjct: 131 KAF 133
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%)
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCE 436
+AEE K + N+ FK Y +A+K Y++AI NP + YY NR+ Y + + L D
Sbjct: 20 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDAT 79
Query: 437 TCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAV 493
++LD K++KG+ R+ + + A+ YE +++ + +A Y++C+ V
Sbjct: 80 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 136
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 68/117 (58%), Gaps = 5/117 (4%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK + N +A ++ AI+ YS+AI+L+ +N I + NRS A+ + Y AL DA + I
Sbjct: 24 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIE 83
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDM 130
L + KGY R+ ++ LG+++ ++ YE +K+ P+++ K ++ QE N +
Sbjct: 84 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK-----MKYQECNKI 135
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 33/159 (20%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE--N 310
LGN YK+ +++EA+ +Y KA+E DP N+ Y+++ +YD+ IE Y + +E
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 311 RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISXXXXXXXXXXXX 370
R+ A+A +GN Y K D+ A Y++K++
Sbjct: 67 RS-----AEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------------ 97
Query: 371 AYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP 409
+DP AE GN +K G Y +A++ Y +A+ +P
Sbjct: 98 --LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 26/159 (16%)
Query: 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISXXXXXXXXXXXXAYIDPVK 377
A+A +GN Y K D+ A Y++K++ +DP
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALE--------------------------LDPRS 34
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
AE GN +K G Y +A++ Y +A+ +P + + N Y K +D ++ +
Sbjct: 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 94
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476
L+LDP+ + W G +AI+ Y+KALELD
Sbjct: 95 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQY 304
RSA+ LGN YK+ +++EA+ +Y KA+E DP N+ Y+++ +YD+ IE Y
Sbjct: 33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 92
Query: 305 IQKIE--NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345
+ +E R+ A+A +GN Y K D+ A Y++K++
Sbjct: 93 QKALELDPRS-----AEAWYNLGNAYYKQGDYDEAIEYYQKAL 130
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 13/140 (9%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
GNA + ++ EAIE Y +A++LD + + N A+ K+G+Y++A+E +K + L P
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFA 137
+ + G+A G Y E+I Y++ L+LDP + EA ++ N +GD
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---RSAEAWYNLGNAY---YKQGD--- 118
Query: 138 NLFSDPNIFVQ--LQLDPRT 155
+ + + Q L+LDPR+
Sbjct: 119 --YDEAIEYYQKALELDPRS 136
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
AE GN +K G Y +A++ Y +A+ +P + + N Y K +D ++ +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L+LDP+ + W G +AI+ Y+KALELD +AEA
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 33/161 (20%)
Query: 286 NIAAVYFERKEYDQCIEQYIQKIE--NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEK 343
N+ Y+++ +YD+ IE Y + +E R+ A+A +GN Y K D+ A Y++K
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRS-----AEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 344 SMSEHRTPEIRTLISXXXXXXXXXXXXAYIDPVKAEEAKERGNELFKNGKYADAVKEYTE 403
++ +DP AE GN +K G Y +A++ Y +
Sbjct: 61 ALE--------------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 94
Query: 404 AINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444
A+ +P + + N Y K +D ++ + L+LDP+
Sbjct: 95 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQY 304
RSA+ LGN YK+ +++EA+ +Y KA+E DP N+ Y+++ +YD+ IE Y
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Query: 305 IQKIE 309
+ +E
Sbjct: 127 QKALE 131
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 13/110 (11%)
Query: 48 FSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107
+ N A+ K+G+Y++A+E +K + L P + + G+A G Y E+I Y++ L+
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 108 LDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQ--LQLDPRT 155
LDP + EA ++ N +GD + + + Q L+LDPR+
Sbjct: 64 LDP---RSAEAWYNLGNAY---YKQGD-----YDEAIEYYQKALELDPRS 102
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDP 278
RSA+ LGN YK+ +++EA+ +Y KA+E DP
Sbjct: 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 64/106 (60%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
GNA + ++ EAIE Y +A++LD N + N A+ K+G+Y++A+E +K + L P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123
+ + G+A G Y E+I Y++ L+LDPNN + K+ + + +
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 373 IDPVKAEEAKER-GNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
+DP + EA GN +K G Y +A++ Y +A+ +P++ + + N Y K +D
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
++ + L+LDP + W G +AI+ Y+KALELD +NAEA
Sbjct: 63 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCI 301
D SA+ LGN YK+ +++EA+ +Y KA+E DP + N+ Y+++ +YD+ I
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 302 EQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345
E Y + +E + A+A +GN Y K D+ A Y++K++
Sbjct: 64 EYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LGN YK+ +++EA+ +Y KA+E DP + N+ Y+++ +YD+ IE Y + +E
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108
Query: 313 DFKLIAKALQRIGNCYKK 330
+ A+A Q +GN +K
Sbjct: 109 N---NAEAKQNLGNAKQK 123
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 42 GTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESIST 101
G + + N A+ K+G+Y++A+E +K + L P+ + + G+A G Y E+I
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 102 YEEGLKLDPNN 112
Y++ L+LDPNN
Sbjct: 66 YQKALELDPNN 76
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 29/126 (23%)
Query: 286 NIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345
N+ Y+++ +YD+ IE Y + +E + A+A +GN Y K D+ A Y++K++
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 346 SEHRTPEIRTLISXXXXXXXXXXXXAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAI 405
+DP AE GN +K G Y +A++ Y +A+
Sbjct: 71 E--------------------------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Query: 406 NRNPDD 411
+P++
Sbjct: 105 ELDPNN 110
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
A+E KE+GN LF KY +A Y AI RNP YY+NRA CY K+ + L DC
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475
L+LD + +K G+ M+ +AI ++A L
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 40/95 (42%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK++GN + EA Y AI + + ++NR+ + K E+AL D + +
Sbjct: 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKL 108
L K + G + Y E+I+ + L
Sbjct: 67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
A+E KE+GN LF KY +A Y AI RNP YY+NRA CY K+ + L DC
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475
L+LD + +K G+ M+ +AI ++A L
Sbjct: 69 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 40/95 (42%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK++GN + EA Y AI + + ++NR+ + K E+AL D + +
Sbjct: 12 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 71
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKL 108
L K + G + Y E+I+ + L
Sbjct: 72 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK++GN A NF EAI+ Y AI+LD + +SN SA + G+ EK +E K +
Sbjct: 24 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 83
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESI 99
+KPD K R+ SA LG + +++
Sbjct: 84 IKPDHSKALLRRASANESLGNFTDAM 109
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 238 KNLTDEQRSAK--KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK 295
K L+ QR A + K GN + KNF EA+ +Y A+E DP + F +NI+A Y
Sbjct: 10 KGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTG 69
Query: 296 EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNA 337
+ ++ IE + +E + D +KAL R + + + ++ +A
Sbjct: 70 DLEKVIEFTTKALEIKPDH---SKALLRRASANESLGNFTDA 108
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
A + K RGN F + +A+K Y AI +P++P +YSN +ACY + ++
Sbjct: 21 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 80
Query: 438 CLKLDPKFLKGWIRKG 453
L++ P K +R+
Sbjct: 81 ALEIKPDHSKALLRRA 96
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 25 NNFIEAIEAYSEAIKLDGT-NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83
NN ++A E+I L T N +F + A + N ++ + +K + L P++P Y
Sbjct: 253 NNLLDAQVLLQESINLHPTPNSYIF--LALTLADKENSQEFFKFFQKAVDLNPEYPPTYY 310
Query: 84 RKGSALSYLGRYKESISTYEEGLKLDPNN 112
+G L YK + +++ L+P N
Sbjct: 311 HRGQMYFILQDYKNAKEDFQKAQSLNPEN 339
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK++GN A NF EAI+ Y AI+LD + +SN SA + G+ EK +E K +
Sbjct: 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESI 99
+KPD K R+ SA LG + +++
Sbjct: 88 IKPDHSKALLRRASANESLGNFTDAM 113
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 238 KNLTDEQRSAK--KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK 295
K L+ QR A + K GN + KNF EA+ +Y A+E DP + F +NI+A Y
Sbjct: 14 KGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTG 73
Query: 296 EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNA 337
+ ++ IE + +E + D +KAL R + + + ++ +A
Sbjct: 74 DLEKVIEFTTKALEIKPDH---SKALLRRASANESLGNFTDA 112
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
A + K RGN F + +A+K Y AI +P++P +YSN +ACY + ++
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 438 CLKLDPKFLKGWIRKG 453
L++ P K +R+
Sbjct: 85 ALEIKPDHSKALLRRA 100
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 25 NNFIEAIEAYSEAIKLDGT-NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83
NN ++A E+I L T N +F + A + N ++ + +K + L P++P Y
Sbjct: 257 NNLLDAQVLLQESINLHPTPNSYIF--LALTLADKENSQEFFKFFQKAVDLNPEYPPTYY 314
Query: 84 RKGSALSYLGRYKESISTYEEGLKLDPNN 112
+G L YK + +++ L+P N
Sbjct: 315 HRGQMYFILQDYKNAKEDFQKAQSLNPEN 343
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 62/106 (58%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
GNA + ++ EAIE Y +A++L N + N A+ K+G+Y++A+E +K + L P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123
+ + G+A G Y E+I Y++ L+L PNN + K+ + + +
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAK 121
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCI 301
D SA+ LGN YK+ +++EA+ +Y KA+E P + N+ Y+++ +YD+ I
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 302 EQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345
E Y + +E + A+A +GN Y K D+ A Y++K++
Sbjct: 64 EYYQKALE---LYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 373 IDPVKAEEAKER-GNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
+DP + EA GN +K G Y +A++ Y +A+ P++ + + N Y K +D
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
++ + L+L P + W G +AI+ Y+KALEL +NAEA
Sbjct: 63 IEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 113
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LGN YK+ +++EA+ +Y KA+E P + N+ Y+++ +YD+ IE Y + +E
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--- 105
Query: 313 DFKLIAKALQRIGNC 327
+ A+A Q +GN
Sbjct: 106 LYPNNAEAKQNLGNA 120
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 42 GTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESIST 101
G + + N A+ K+G+Y++A+E +K + L P+ + + G+A G Y E+I
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 102 YEEGLKLDPNN 112
Y++ L+L PNN
Sbjct: 66 YQKALELYPNN 76
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 29/126 (23%)
Query: 286 NIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345
N+ Y+++ +YD+ IE Y + +E + A+A +GN Y K D+ A Y++K++
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALE---LYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 346 SEHRTPEIRTLISXXXXXXXXXXXXAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAI 405
+ P AE GN +K G Y +A++ Y +A+
Sbjct: 71 E--------------------------LYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Query: 406 NRNPDD 411
P++
Sbjct: 105 ELYPNN 110
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH---ILFSNRSAAFAKEGNYEKALED 67
V L+ +GN + ++ A+ AY++A+ LD T +L NR+A K +Y+KA +
Sbjct: 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETE 87
Query: 68 AEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV 122
A K I K R+ AL LGR +++ + + L+P N+ +EA++++
Sbjct: 88 ASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 379 EEAKERGNELFKNGKYADAVKEYTEAINRNP---DDPKYYSNRAACYTKLAAFDLGLKDC 435
E+ ++ GNELFK G Y A+ YT+A+ + D + NRAAC+ KL +D +
Sbjct: 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEA 88
Query: 436 ETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCS 490
++ D +K R+ + L+ + + +A+ ++ + L+ N E R S
Sbjct: 89 SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143
Score = 32.0 bits (71), Expect = 0.95, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT---DITFQNNIAAVYFERKEYDQCIE 302
S ++ ++ GNE +K ++ ALA Y +A+ D T N AA + + ++YD+
Sbjct: 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAET 86
Query: 303 QYIQKIE-NRADFKLI---AKALQRIG 325
+ + IE + D K + ++AL+++G
Sbjct: 87 EASKAIEKDGGDVKALYRRSQALEKLG 113
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 382 KERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441
K++GN+ F+N KY DA+K Y A+ +DP +YSN +ACY + ++ L+L
Sbjct: 10 KDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL 68
Query: 442 DPKFLKGWIRKGKILQGMQQQSKAI 466
P + K +R+ +G+ + + A+
Sbjct: 69 KPDYSKVLLRRASANEGLGKFADAM 93
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LKDKGN + + +AI+ Y+ A++L + + +SN SA + G+ +K +E + K +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALEL-KEDPVFYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESI 99
LKPD+ K R+ SA LG++ +++
Sbjct: 68 LKPDYSKVLLRRASANEGLGKFADAM 93
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN 310
K+ GN+ ++ K +++A+ +YN A+E D F +N++A Y + + +E + +E
Sbjct: 10 KDKGNQFFRNKKYDDAIKYYNWALEL-KEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL 68
Query: 311 RADF 314
+ D+
Sbjct: 69 KPDY 72
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 100/246 (40%), Gaps = 12/246 (4%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
EL + Y+ +FE A H + +P + +++++F+ + D+ I+
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS---EHRTPEIRTLISXXXXXXXXXX 368
L+A+A +GN YK+ + A ++ ++ + I +
Sbjct: 64 ---PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 369 XXAYIDPVKAEE-----AKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYT 423
AY+ ++ + GN L G+ +A Y +AI P+ +SN +
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Query: 424 KLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483
L + E + LDP FL +I G +L+ + +A+ AY +AL L ++A V
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA-VV 239
Query: 484 EGYRQC 489
G C
Sbjct: 240 HGNLAC 245
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 99/259 (38%), Gaps = 39/259 (15%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
A+ LGN ++ +EA+ HY A+ P I N+AA + + ++ Y+
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 307 KIEN-------RADFKLIAKALQRIGN---CYKKMED--------WKNAKVYF----EKS 344
++ R+D + KAL R+ CY K + W N F E
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186
Query: 345 MSEHRTPEIRTLISXXXXXXXXXXXXAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404
++ H + TL DP + GN L + + AV Y A
Sbjct: 187 LAIHHFEKAVTL-----------------DPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK 464
++ +P+ + N A Y + DL + ++L P F + L+ ++
Sbjct: 230 LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE 289
Query: 465 AIDAYEKALELDASNAEAV 483
A D Y AL L ++A+++
Sbjct: 290 AEDCYNTALRLCPTHADSL 308
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 78/208 (37%), Gaps = 29/208 (13%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LGN + + F+ A+A Y +A+ P N+A VY+E+ D I+ Y + IE +
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISXXXXXXXXXXXXAY 372
F A + N K+ A+ + ++
Sbjct: 269 HFP---DAYCNLANALKEKGSVAEAEDCYNTALR-------------------------- 299
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ P A+ N + G +AV+ Y +A+ P+ +SN A+ + L
Sbjct: 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQ 460
+ +++ P F + G L+ MQ
Sbjct: 360 MHYKEAIRISPTFADAYSNMGNTLKEMQ 387
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%)
Query: 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK 75
D GN EA Y +AI+ + +SN F +G A+ EK ++L
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199
Query: 76 PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
P++ Y G+ L + +++ Y L L PN+
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 18 GNAALQANNFIEAIEAYSEAIKL-----DGTNHILFSNRSAAFAKEGNYEKALEDAEKTI 72
GN + EAIE Y A++L DG + N +AA G+ E A++ +
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDG-----YINLAAALVAAGDMEGAVQAYVSAL 128
Query: 73 SLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN 111
PD S G+ L LGR +E+ + Y + ++ PN
Sbjct: 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 48 FSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107
+SN + + G ++A+E + LKPD+ GY +AL G + ++ Y L+
Sbjct: 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129
Query: 108 LDPN 111
+P+
Sbjct: 130 YNPD 133
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
L N ++ N EEA+ Y KA+E P +N+A+V ++ + + + Y + I
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
Query: 313 DFKLIAKALQRIGNCYKKMED 333
F A A +GN K+M+D
Sbjct: 371 TF---ADAYSNMGNTLKEMQD 388
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/217 (18%), Positives = 81/217 (37%), Gaps = 29/217 (13%)
Query: 266 ALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIG 325
A+ H+ KAV DP + N+ V E + +D+ + Y++ + + ++ L
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL---- 243
Query: 326 NCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISXXXXXXXXXXXXAYIDPVKAEEAKERG 385
A VY+E+ + + R I + P +
Sbjct: 244 -----------ACVYYEQGLIDLAIDTYRRAIE--------------LQPHFPDAYCNLA 278
Query: 386 NELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF 445
N L + G A+A Y A+ P +N A + + ++ L++ P+F
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338
Query: 446 LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+LQ + +A+ Y++A+ + + A+A
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCI 301
D SA+ LGN YK+ +++EA+ +Y KA+E DP + N+ Y+++ +YD+ I
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 302 EQYIQKIENRADFKLIAKALQRIGNCYKK 330
E Y + +E + A+A Q +GN +K
Sbjct: 64 EYYQKALELDPN---NAEAKQNLGNAKQK 89
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%)
Query: 42 GTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESIST 101
G + + N A+ K+G+Y++A+E +K + L P+ + + G+A G Y E+I
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 102 YEEGLKLDPNNEQMKEAIKDVR 123
Y++ L+LDPNN + K+ + + +
Sbjct: 66 YQKALELDPNNAEAKQNLGNAK 87
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
GNA + ++ EAIE Y +A++LD N + N A+ K+G+Y++A+E +K + L P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 415 YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474
+ N Y K +D ++ + L+LDP + W G +AI+ Y+KALE
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 475 LDASNAEA 482
LD +NAEA
Sbjct: 72 LDPNNAEA 79
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 373 IDPVKAEEAKER-GNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
+DP + EA GN +K G Y +A++ Y +A+ +P++ + + N Y K +D
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 432 LKDCETCLKLDP 443
++ + L+LDP
Sbjct: 63 IEYYQKALELDP 74
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 26/94 (27%)
Query: 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISXXXXXXXXXXXXAYIDPVK 377
A+A +GN Y K D+ A Y++K++ +DP
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE--------------------------LDPNN 42
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDD 411
AE GN +K G Y +A++ Y +A+ +P++
Sbjct: 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 441 LDP-KFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+DP + W G +AI+ Y+KALELD +NAEA
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 45
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETC 438
E+ KE+GN LFK G Y +AV Y + I P +P YSN+A KL + ++ C+
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64
Query: 439 LK 440
L+
Sbjct: 65 LR 66
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 57 KEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQM 115
K+G Y +A+ ++ I+ +P P GYS K AL LG Y ++I ++GL+ E +
Sbjct: 16 KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV 74
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTI 72
K++GN+ + + EA+ Y + I N + +SN++ A K G Y +A++ ++ +
Sbjct: 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIE 302
+K+KE GN +K+ + EA+ Y++ + P + +N A + EY Q I+
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ 59
>pdb|3U4T|A Chain A, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b.
pdb|3U4T|B Chain B, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b
Length = 272
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 388 LFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCL-KLDPKFL 446
LFKN YA+A++ + + + + P Y+ RA CY +LA +DL KD ET K++
Sbjct: 13 LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA 72
Query: 447 KG--WIRKGKILQGMQQQSKAIDAYEKALELDAS 478
K + GKIL Q S AI Y+ A++ D +
Sbjct: 73 KSADFEYYGKILXKKGQDSLAIQQYQAAVDRDTT 106
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYI 305
SA+ LGN YK+ +++EA+ +Y KA+E DP N+ Y+++ +YD+ IE Y
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 306 QKIE 309
+ +E
Sbjct: 62 KALE 65
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GNA + ++ EAIE Y +A++LD + + N A+ K+G+Y++A+E +K + L P
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 48 FSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107
+ N A+ K+G+Y++A+E +K + L P + + G+A G Y E+I Y++ L+
Sbjct: 6 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Query: 108 LDP 110
LDP
Sbjct: 66 LDP 68
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 238 KNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDP 278
K L + RSA+ LGN YK+ +++EA+ +Y KA+E DP
Sbjct: 28 KALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 415 YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474
+ N Y K +D ++ + L+LDP+ + W G +AI+ Y+KALE
Sbjct: 6 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Query: 475 LD 476
LD
Sbjct: 66 LD 67
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
AE GN +K G Y +A++ Y +A+ +P + + N Y K +D ++ +
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 438 CLKLDPK 444
L+LDP+
Sbjct: 63 ALELDPR 69
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 26/92 (28%)
Query: 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISXXXXXXXXXXXXAYIDPVK 377
A+A +GN Y K D+ A Y++K++ +DP
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALE--------------------------LDPRS 36
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNP 409
AE GN +K G Y +A++ Y +A+ +P
Sbjct: 37 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 29/169 (17%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
L N ++ N EEA+ Y KA+E P +N+A+V ++ + + + Y + I
Sbjct: 15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISXXXXXXXXXXXXAY 372
F A A +GN K+M+D + A + +++
Sbjct: 75 TF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQ-------------------------- 105
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAAC 421
I+P A+ + +G +A+ Y A+ PD P Y N A C
Sbjct: 106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 48/108 (44%)
Query: 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKD 434
P A+ N + G +AV+ Y +A+ P+ +SN A+ + L
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 435 CETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ +++ P F + G L+ MQ A+ Y +A++++ + A+A
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA 113
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%)
Query: 29 EAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSA 88
EA+ Y EAI++ T +SN + + + AL+ + I + P + +S S
Sbjct: 61 EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 120
Query: 89 LSYLGRYKESISTYEEGLKLDPN 111
G E+I++Y LKL P+
Sbjct: 121 HKDSGNIPEAIASYRTALKLKPD 143
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
GN + + A++ Y+ AI+++ SN ++ GN +A+ + LKPD
Sbjct: 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLK 107
+P Y L + + + Y+E +K
Sbjct: 144 FPDAYCNLAHCLQIVCDWTD----YDERMK 169
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
+GN + ++ + AL Y +A++ +P +N+A+++ + + I Y ++ +
Sbjct: 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142
Query: 313 DFKLIAKALQRIGNCYKKMEDWKN 336
DF A + +C + + DW +
Sbjct: 143 DFP---DAYCNLAHCLQIVCDWTD 163
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 33/85 (38%)
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
I P A+ GN L + A++ YT AI NP +SN A+ + +
Sbjct: 72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAI 131
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQ 457
T LKL P F + LQ
Sbjct: 132 ASYRTALKLKPDFPDAYCNLAHCLQ 156
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%)
Query: 388 LFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLK 447
L + GK +A+ Y EAI +P YSN ++ L+ ++++P F
Sbjct: 53 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD 112
Query: 448 GWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
I + +AI +Y AL+L +A C
Sbjct: 113 AHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 382 KERGNELFKNGKYADAVKEYTEAIN--------RNPDDPK-------YYSNRAACYTKLA 426
KERG FK GKY A+ +Y + ++ N + K + N A C+ KL
Sbjct: 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210
Query: 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
AF ++ C L+LD KG R+G+ + A ++K L+L +N A
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266
>pdb|2LLV|A Chain A, Solution Structure Of The Yeast Sti1 Dp1 Domain
Length = 71
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 136 FANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKL-KDPRMMTTLSVL 194
LF+DPN+ L+ +P+T + DP V + +++P + L DPR+MT ++ L
Sbjct: 6 LTQLFADPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMATL 65
Query: 195 LGVNMS 200
+GV+++
Sbjct: 66 MGVDLN 71
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 383 ERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442
E G +L G+ ADA+ ++ A++ +PD+ Y RA + + L D ++L
Sbjct: 31 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90
Query: 443 PKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEEVRK 502
F +++G +L + +A D ++K L+ + S E E Q + S + +R
Sbjct: 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA--QSQLIKSDEMQRLRS 148
Query: 503 RAM 505
+A+
Sbjct: 149 QAL 151
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
E+ L+ + A + ++ AI + +++ + L R+ F KEG KA+ D +
Sbjct: 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 201
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123
LK D + + + + LG ++ S+S E LKLD ++++ K V+
Sbjct: 202 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK 255
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 382 KERGNELFKNGKYADAVKEYTEAIN--------RNPDDPK-------YYSNRAACYTKLA 426
KERG FK GKY A+ +Y + ++ N + K + N A C+ KL
Sbjct: 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210
Query: 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
AF ++ C L+LD KG R+G+ + A ++K L+L +N A
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 22 LQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
L+ F AIE+ ++A++LD N S R A ++E A D +K + L P+
Sbjct: 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 61 YEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIK 120
+ A+E K + L + KG SR+G A + ++ + + +++ L+L PNN+ K +
Sbjct: 212 FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA 271
Query: 121 DVRNQEMNDMNRGDP-FANLF 140
+ + + R +AN+F
Sbjct: 272 VCQQRIRRQLAREKKLYANMF 292
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 382 KERGNELFKNGKYADAVKEYTEAINR-------NPDDPKY--------YSNRAACYTKLA 426
KE+G FK GKY AV +Y + ++ + + K + N A CY KL
Sbjct: 272 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331
Query: 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ ++ C+ L LD KG R+G+ M + A +EK LE++ N A
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 387
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 67/148 (45%), Gaps = 18/148 (12%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHIL---------------FSNRSAA 54
+ +++K+KG + +++A+ Y + + + L F N +
Sbjct: 267 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326
Query: 55 FAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
+ K Y KA+E +K + L KG R+G A + ++ + +E+ L+++P N+
Sbjct: 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386
Query: 115 MKEAI--KDVRNQEMNDMNRGDPFANLF 140
+ I + +E N+ +R +AN+F
Sbjct: 387 ARLQIFMCQKKAKEHNERDR-RTYANMF 413
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 382 KERGNELFKNGKYADAVKEYTEAINR-------NPDDPKY--------YSNRAACYTKLA 426
KE+G FK GKY AV +Y + ++ + + K + N A CY KL
Sbjct: 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331
Query: 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ ++ C+ L LD KG R+G+ M + A +EK LE++ N A
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 387
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 70/148 (47%), Gaps = 18/148 (12%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHIL---------------FSNRSAA 54
+ +++K+KG + +++A+ Y + + + L F N +
Sbjct: 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326
Query: 55 FAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNE- 113
+ K Y KA+E +K + L KG R+G A + ++ + +E+ L+++P N+
Sbjct: 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386
Query: 114 -QMKEAIKDVRNQEMNDMNRGDPFANLF 140
+++ ++ + +E N+ +R +AN+F
Sbjct: 387 ARLQISMCQKKAKEHNERDR-RIYANMF 413
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 383 ERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442
E G +L G+ ADA+ ++ A++ +PD+ Y RA + L D ++L
Sbjct: 31 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLK 90
Query: 443 PKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEEVRK 502
F +++G +L + +A D ++K L+ + S E E Q + S + +R
Sbjct: 91 XDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA--QSQLIKSDEXQRLRS 148
Query: 503 RAM 505
+A+
Sbjct: 149 QAL 151
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 51 RSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDP 110
R+ F KEG KA+ D + LK D + + + + LG ++ S+S E LKLD
Sbjct: 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242
Query: 111 NNEQMKEAIKDVR 123
++++ K V+
Sbjct: 243 DHKRCFAHYKQVK 255
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 47/112 (41%), Gaps = 17/112 (15%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDD------PKY-----------YSNRAA 420
A+ K GN LFK K +A+++Y AI DD KY + N AA
Sbjct: 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAA 238
Query: 421 CYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKA 472
C KL +D + C L + K K R+GK + Q A D + KA
Sbjct: 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKA 290
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 19/82 (23%)
Query: 239 NLTDEQR--SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ------------ 284
++T E+R +A + K GN +K++ EEA+ Y A+ + D FQ
Sbjct: 169 DMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV 228
Query: 285 -----NNIAAVYFERKEYDQCI 301
NIAA + K YD+ I
Sbjct: 229 KNPCHLNIAACLIKLKRYDEAI 250
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%)
Query: 383 ERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442
E G +L G+ ADA+ ++ A++ +PD+ Y RA + L D + L
Sbjct: 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALK 67
Query: 443 PKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQ 488
F +++G +L + +A D ++K L+ + S E E Q
Sbjct: 68 XDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 51 RSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDP 110
R+ F KEG KA+ D + LK D + + + + LG ++ S+S E LKLD
Sbjct: 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219
Query: 111 NNEQMKEAIKDVR 123
++++ K V+
Sbjct: 220 DHKRCFAHYKQVK 232
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 29 EAIEAYSEAIKLD---GTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRK 85
+A+ AY++A K+D +N L NR+ E +Y +ALE + +L P WP+ R+
Sbjct: 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298
Query: 86 GSALSYLGR 94
L +L R
Sbjct: 299 QQLLEFLSR 307
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 385 GNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444
G +L+ G+Y A+ + A+ NP DP+ A KL + L++ +T + P+
Sbjct: 12 GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR 71
Query: 445 FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEEVRKR 503
+L G++ +L +AY AL A + E +GY + +++V + E V R
Sbjct: 72 YLGGYM----VLS---------EAY-VALYRQAEDRERGKGYLEQALSVLKDAERVNPR 116
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAIN---------RNPDDPKYYS-------NRAAC 421
+E+ K GN FK+ + A+K+YT+ + + D K N AC
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282
Query: 422 YTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475
K++ + + C L++DP K R+ + QG+++ +A+ +KA E+
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 22 LQANNFI-----EAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
L + NF+ AI+A AI L+ + + G ++KA+E EKTIS+KP
Sbjct: 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138
Query: 77 DWPKGYSRKGSALSYLGR 94
+ + Y G L+Y G+
Sbjct: 139 GFIRAYQSIG--LAYEGK 154
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 428 FDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
FD ++ + LK DP ++ ++ GK + + AI++ +K + LD ++AEA
Sbjct: 21 FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA 75
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 59 GNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTY 102
GNY ++++ EK I L P+ K + KG AL L RY+E++ Y
Sbjct: 20 GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCY 63
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 436 ETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAY 469
E ++LDP+ K W+ KGK L +++ +A+D Y
Sbjct: 30 EKAIQLDPEESKYWLMKGKALYNLERYEEAVDCY 63
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 16/115 (13%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEA-------------IKLDGTNHILFS---NRSAAFAK 57
+K++GN + N EAI Y EA I LD +I S N + + K
Sbjct: 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 100
Query: 58 EGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+Y KA++ A K + + + K + G A Y G +E+ + L+PNN
Sbjct: 101 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 18/81 (22%)
Query: 241 TDEQR--SAKKEKELGNEAYKKKNFEEALAHYNKAVEF----------------DPTDIT 282
TDE++ SA KE GNE +KK EA+ Y +A++F +I+
Sbjct: 30 TDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89
Query: 283 FQNNIAAVYFERKEYDQCIEQ 303
N+A Y + K+Y + I+
Sbjct: 90 CNLNLATCYNKNKDYPKAIDH 110
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 36/73 (49%)
Query: 404 AINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQS 463
A+ NP+D + +++ Y +D + ++L P + W + G L +
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 464 KAIDAYEKALELD 476
+A+DAY +AL+++
Sbjct: 224 EALDAYNRALDIN 236
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/74 (20%), Positives = 39/74 (52%)
Query: 37 AIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYK 96
A++++ + L ++ + NY+ A + + + L+PD + +++ G+ L+ R +
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 97 ESISTYEEGLKLDP 110
E++ Y L ++P
Sbjct: 224 EALDAYNRALDINP 237
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 264 EEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKI 308
+EAL YN+A++ +P + N+A Y +YD +Q ++ I
Sbjct: 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 36/73 (49%)
Query: 404 AINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQS 463
A+ NP+D + +++ Y +D + ++L P + W + G L +
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 464 KAIDAYEKALELD 476
+A+DAY +AL+++
Sbjct: 224 EALDAYNRALDIN 236
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 42/86 (48%)
Query: 25 NNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSR 84
N + E A++++ + L ++ + NY+ A + + + L+PD + +++
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK 211
Query: 85 KGSALSYLGRYKESISTYEEGLKLDP 110
G+ L+ R +E++ Y L ++P
Sbjct: 212 LGATLANGNRPQEALDAYNRALDINP 237
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 264 EEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKI 308
+EAL YN+A++ +P + N+A Y +YD +Q ++ I
Sbjct: 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 396 DAVKE-YTEAINRNPD--DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452
+ VKE Y EA ++N D DP + + F+ + L + P+ W R
Sbjct: 194 EGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRL 253
Query: 453 GKILQGMQQQSKAIDAYEKALEL 475
G L + +A++AY +ALE+
Sbjct: 254 GATLANGDRSEEAVEAYTRALEI 276
>pdb|4I17|A Chain A, Crystal Structure Of A Hypothetical Protein (Bf2334) From
Bacteroides Fragilis Nctc 9343 At 1.50 A Resolution
Length = 228
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEK-TI 72
LK++GN AL A N+ A E YSE +KL + + A N +K E A+ I
Sbjct: 10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD--NIKKYKEAADYFDI 67
Query: 73 SLKPDW--PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQM 115
++K ++ Y K +A +E I+T EG+K P N +
Sbjct: 68 AIKKNYNLANAYIGKSAAYRDXKNNQEYIATLTEGIKAVPGNATI 112
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 27 FIEAIEAYSEAIKLDGT--NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSR 84
F+E E + A++LD T + + F G Y+KA++ +S++P+ +++
Sbjct: 148 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 207
Query: 85 KGSALSYLGRYKESISTYEEGLKLDPN 111
G+ L+ + +E+++ Y L+L P
Sbjct: 208 LGATLANGNQSEEAVAAYRRALELQPG 234
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 436 ETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495
E ++ DPK ++ W G +Q+ AI A + LEL N A+ ++AVS
Sbjct: 39 EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL-----MALAVSF 93
Query: 496 NPEEVRKRAMGDPEVQQILRD 516
E ++++A +ILRD
Sbjct: 94 TNESLQRQAC------EILRD 108
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 27 FIEAIEAYSEAIKLDGT--NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSR 84
F+E E + A++LD T + + F G Y+KA++ +S++P+ +++
Sbjct: 134 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 193
Query: 85 KGSALSYLGRYKESISTYEEGLKLDPN 111
G+ L+ + +E+++ Y L+L P
Sbjct: 194 LGATLANGNQSEEAVAAYRRALELQPG 220
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 436 ETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495
E ++ DPK ++ W G +Q+ AI A + LEL N A+ ++AVS
Sbjct: 25 EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL-----MALAVSF 79
Query: 496 NPEEVRKRAMGDPEVQQILRD 516
E ++++A +ILRD
Sbjct: 80 TNESLQRQAC------EILRD 94
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%)
Query: 371 AYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDL 430
A D +A+ ERG G A A ++++A+ PD P+ ++ T+ FD
Sbjct: 36 ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDA 95
Query: 431 GLKDCETCLKLDPKFLKGWIRKGKIL 456
+ ++ L+LDP + + +G L
Sbjct: 96 AYEAFDSVLELDPTYNYAHLNRGIAL 121
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 30/65 (46%)
Query: 47 LFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGL 106
L R + G A D + ++++PD P+ ++ G L+ G + + ++ L
Sbjct: 45 LLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVL 104
Query: 107 KLDPN 111
+LDP
Sbjct: 105 ELDPT 109
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 384 RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443
RG+E G Y A + +T+AI N +D Y N A + + + L + L+LD
Sbjct: 32 RGSEF---GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88
Query: 444 KFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481
+ G + + +A D +EKAL N +
Sbjct: 89 SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGD 126
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 27 FIEAIEAYSEAIKLDGT--NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSR 84
F+E E + A++LD T + + F G Y+KA++ +S++P+ +++
Sbjct: 157 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 216
Query: 85 KGSALSYLGRYKESISTYEEGLKLDPN 111
G+ L+ + +E+++ Y L+L P
Sbjct: 217 LGATLANGNQSEEAVAAYRRALELQPG 243
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 436 ETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495
E ++ DPK ++ W G +Q+ AI A + LEL N A+ ++AVS
Sbjct: 48 EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL-----MALAVSF 102
Query: 496 NPEEVRKRA 504
E ++++A
Sbjct: 103 TNESLQRQA 111
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 27 FIEAIEAYSEAIKLDGT--NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSR 84
F+E E + A++LD T + + F G Y+KA++ +S++P+ +++
Sbjct: 157 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 216
Query: 85 KGSALSYLGRYKESISTYEEGLKLDPN 111
G+ L+ + +E+++ Y L+L P
Sbjct: 217 LGATLANGNQSEEAVAAYRRALELQPG 243
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 436 ETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495
E ++ DPK ++ W G +Q+ AI A + LEL N A+ ++AVS
Sbjct: 48 EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL-----MALAVSF 102
Query: 496 NPEEVRKRAMGDPEVQQILRD 516
E ++++A +ILRD
Sbjct: 103 TNESLQRQAC------EILRD 117
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 27 FIEAIEAYSEAIKLDGT--NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSR 84
F+E E + A++LD T + + F G Y+KA++ +S++P+ +++
Sbjct: 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 256
Query: 85 KGSALSYLGRYKESISTYEEGLKLDPN 111
G+ L+ + +E+++ Y L+L P
Sbjct: 257 LGATLANGNQSEEAVAAYRRALELQPG 283
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 436 ETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495
E ++ DPK ++ W G +Q+ AI A + LEL N A+ ++AVS
Sbjct: 88 EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL-----MALAVSF 142
Query: 496 NPEEVRKRAMGDPEVQQILRD 516
E ++++A +ILRD
Sbjct: 143 TNESLQRQAC------EILRD 157
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 19/100 (19%)
Query: 374 DPVKAEEA-KERGNELFKNGKYADAVKEYTEAINR--------NPDDPKY---------- 414
D +K+ EA +++GNELF Y +A+ Y +A+ R P +P++
Sbjct: 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPL 65
Query: 415 YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGK 454
Y+N + CY + + LK + K R+ K
Sbjct: 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAK 105
>pdb|1WPQ|A Chain A, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1
With Nad And Dihydroxyactone
pdb|1WPQ|B Chain B, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1
With Nad And Dihydroxyactone
Length = 349
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 102 YEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD 161
Y G KL PN + + ++ + ++ +F P+ F+ D ++
Sbjct: 63 YLPGHKLPPNVVAVPDVVQAAEDADIL----------IFVVPHQFIGKICDQLKGHLKAN 112
Query: 162 PSYVQMIKEIQKDPSLM--TTKLKDPRMMTTLSVLLGVNMSSTMGD 205
P+ + +IK + + P+ + +++ R+ +SVL+G N++S + D
Sbjct: 113 PTGISLIKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVAD 158
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAI 119
R G AL LGR+ E+I +++ L L PN ++ AI
Sbjct: 115 RLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 270 YNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYK 329
Y KA+ D + NN +E+K Y++ ++ ++ ++ + ++ + +G
Sbjct: 107 YRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL-YPERSRVFENLGLVSL 165
Query: 330 KMEDWKNAKVYFEKSMSEHR 349
+M+ AK YFEKS+ +R
Sbjct: 166 QMKKPAQAKEYFEKSLRLNR 185
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 34/139 (24%)
Query: 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL 74
+DKG + +A + EA+ + D + + + A+ K G ++ E E++I+
Sbjct: 12 RDKGISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIAD 71
Query: 75 KPDWPKGYS----------------------------------RKGSALSYLGRYKESIS 100
PD K + R G AL LGR+ E+I
Sbjct: 72 APDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAID 131
Query: 101 TYEEGLKLDPNNEQMKEAI 119
+++ L L PN ++ AI
Sbjct: 132 SFKIALGLRPNEGKVHRAI 150
>pdb|2KAT|A Chain A, Solution Structure Of Protein Bpp2914 From Bordetella
Parapertussis. Northeast Structural Genomics Consortium
Target Bpr206
Length = 115
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 24/60 (40%)
Query: 422 YTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481
Y + FD L L DP + W GK LQG ++ A A+E L S +
Sbjct: 29 YAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD 88
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAI 119
R G AL LGR+ E+I +++ L L PN ++ AI
Sbjct: 115 RLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAI 119
R G AL LGR+ E+I +++ L L PN ++ AI
Sbjct: 115 RLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 58 EGNYEKALEDAEKTISLKP-DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNE--Q 114
+G+ E AL+ E+ + +P + Y G+A LG ++++++ Y+ ++L+P++ Q
Sbjct: 13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72
Query: 115 MKEAIKDVRNQEMNDM 130
++ + D+ N DM
Sbjct: 73 ARKMVMDILNFYNKDM 88
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 26 NFIEAIEAY--SEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83
N ++A+E + +E + D +++ A+ K G+++KAL + + I L PD P +
Sbjct: 18 NALQALEEFLQTEPVGKDEAYYLM----GNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73
Query: 84 RK 85
RK
Sbjct: 74 RK 75
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 436 ETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495
E LK DPK W+ + +I Q ++ KA +++ +AL + +AE Y +
Sbjct: 32 EDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN 91
Query: 496 NPEEVRK---RAMGDP 508
P E +A+ DP
Sbjct: 92 RPAESMAYFDKALADP 107
>pdb|3CUX|A Chain A, Atomic Resolution Structures Of Escherichia Coli And
Bacillis Anthracis Malate Synthase A: Comparison With
Isoform G And Implications For Structure Based Drug
Design
Length = 528
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAV---EFDP 278
AK E+E+G EA+KK F+EA + V EF P
Sbjct: 484 AKIEREIGKEAFKKGRFQEATTLFTNLVRNDEFVP 518
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 270 YNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYK 329
Y KA+ D + NN +E+K Y++ ++ ++ ++ + ++ + +G
Sbjct: 94 YRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL-YPERSRVFENLGLVSL 152
Query: 330 KMEDWKNAKVYFEKSMSEHR 349
+ + AK YFEKS+ +R
Sbjct: 153 QXKKPAQAKEYFEKSLRLNR 172
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 60 NYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAI 119
+++ AL +KT S + W ++ G A L Y +I +GL L N+ + AI
Sbjct: 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI 556
Query: 120 KDV 122
V
Sbjct: 557 ALV 559
>pdb|3MA5|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c
Length = 100
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309
L E K N ALA + + VE DP + ++ +Y D I+ Y Q IE
Sbjct: 13 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69
>pdb|2KCL|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
pdb|2KCV|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
Length = 99
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309
L E K N ALA + + VE DP + ++ +Y D I+ Y Q IE
Sbjct: 12 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,717,377
Number of Sequences: 62578
Number of extensions: 619629
Number of successful extensions: 1970
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1492
Number of HSP's gapped (non-prelim): 382
length of query: 570
length of database: 14,973,337
effective HSP length: 104
effective length of query: 466
effective length of database: 8,465,225
effective search space: 3944794850
effective search space used: 3944794850
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)