Query psy3014
Match_columns 570
No_of_seqs 971 out of 2781
Neff 11.6
Searched_HMMs 46136
Date Fri Aug 16 23:17:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0548|consensus 100.0 3.8E-50 8.3E-55 362.1 49.7 531 11-557 2-538 (539)
2 KOG4626|consensus 100.0 2.7E-48 5.8E-53 354.0 25.3 392 2-496 107-506 (966)
3 KOG4626|consensus 100.0 1.6E-46 3.5E-51 342.5 21.8 440 8-516 45-495 (966)
4 TIGR00990 3a0801s09 mitochondr 100.0 9.9E-37 2.1E-41 309.9 46.7 417 10-499 126-561 (615)
5 KOG0547|consensus 100.0 5.7E-35 1.2E-39 260.1 33.9 425 8-499 112-556 (606)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-34 2.8E-39 313.9 41.0 424 6-499 460-890 (899)
7 PRK11447 cellulose synthase su 100.0 1.2E-34 2.6E-39 313.3 40.4 418 16-499 274-730 (1157)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.5E-34 7.6E-39 310.5 41.3 420 8-498 428-855 (899)
9 TIGR00990 3a0801s09 mitochondr 100.0 5.6E-33 1.2E-37 282.5 41.1 344 10-482 159-578 (615)
10 PRK11447 cellulose synthase su 100.0 1.4E-32 3.1E-37 297.2 44.9 456 7-498 58-655 (1157)
11 PRK15174 Vi polysaccharide exp 100.0 1E-32 2.2E-37 279.0 40.6 347 4-480 35-386 (656)
12 KOG0624|consensus 100.0 2.5E-32 5.3E-37 232.7 34.7 402 7-548 34-461 (504)
13 PRK15174 Vi polysaccharide exp 100.0 1.7E-32 3.6E-37 277.5 37.2 335 4-479 69-407 (656)
14 KOG2002|consensus 100.0 2.7E-30 5.8E-35 249.1 35.9 432 8-495 304-765 (1018)
15 PRK10049 pgaA outer membrane p 100.0 1.2E-29 2.6E-34 262.5 40.4 415 7-484 45-465 (765)
16 KOG2002|consensus 100.0 1.2E-29 2.6E-34 244.6 36.1 392 4-495 157-579 (1018)
17 PRK09782 bacteriophage N4 rece 100.0 1.3E-29 2.8E-34 261.6 38.9 266 239-511 467-745 (987)
18 PRK10049 pgaA outer membrane p 100.0 6.8E-28 1.5E-32 249.5 41.2 389 8-498 12-445 (765)
19 KOG1126|consensus 100.0 3.1E-29 6.7E-34 233.1 25.6 210 244-482 418-627 (638)
20 KOG1155|consensus 100.0 4.3E-27 9.2E-32 208.9 34.1 358 8-494 161-555 (559)
21 PRK11788 tetratricopeptide rep 100.0 3.6E-27 7.7E-32 228.7 36.5 312 4-479 28-355 (389)
22 KOG1126|consensus 100.0 4.1E-28 8.9E-33 225.7 25.2 292 47-501 319-612 (638)
23 PRK11788 tetratricopeptide rep 100.0 3.8E-26 8.3E-31 221.5 36.6 290 45-491 35-327 (389)
24 PRK09782 bacteriophage N4 rece 100.0 8.5E-27 1.8E-31 240.9 33.6 355 7-495 372-759 (987)
25 KOG1173|consensus 100.0 9.7E-26 2.1E-30 205.5 33.7 419 5-492 43-535 (611)
26 KOG0547|consensus 100.0 7.3E-26 1.6E-30 202.4 32.1 393 47-514 117-540 (606)
27 KOG2076|consensus 99.9 6.2E-25 1.3E-29 211.0 32.7 358 6-498 134-501 (895)
28 KOG2003|consensus 99.9 2.4E-25 5.2E-30 197.4 26.7 443 10-497 200-711 (840)
29 PRK14574 hmsH outer membrane p 99.9 5.7E-24 1.2E-28 215.5 40.3 392 7-499 30-503 (822)
30 KOG0550|consensus 99.9 3.4E-25 7.3E-30 194.2 22.1 323 5-495 43-369 (486)
31 KOG1155|consensus 99.9 9.6E-23 2.1E-27 181.5 35.8 374 13-500 80-486 (559)
32 KOG1173|consensus 99.9 1.1E-23 2.5E-28 192.1 29.2 298 3-456 236-533 (611)
33 PRK14574 hmsH outer membrane p 99.9 4.5E-22 9.7E-27 201.9 40.7 408 10-483 101-521 (822)
34 KOG2076|consensus 99.9 2.8E-22 6.1E-27 192.9 33.7 342 1-496 163-542 (895)
35 KOG0495|consensus 99.9 3.7E-21 8.1E-26 178.3 37.2 371 10-514 515-888 (913)
36 PF13429 TPR_15: Tetratricopep 99.9 9.9E-25 2.2E-29 200.0 13.1 186 259-474 89-276 (280)
37 KOG1125|consensus 99.9 3.2E-23 6.9E-28 190.2 21.8 244 251-497 289-559 (579)
38 KOG0548|consensus 99.9 2.1E-21 4.6E-26 176.8 33.0 333 49-515 6-464 (539)
39 TIGR00540 hemY_coli hemY prote 99.9 1.9E-21 4.2E-26 187.2 35.0 303 9-475 82-399 (409)
40 PF13429 TPR_15: Tetratricopep 99.9 2E-24 4.3E-29 197.9 13.1 264 13-441 10-277 (280)
41 KOG1174|consensus 99.9 7.5E-22 1.6E-26 173.2 28.1 331 35-495 185-520 (564)
42 PRK12370 invasion protein regu 99.9 7.2E-22 1.6E-26 197.3 31.7 267 246-541 257-548 (553)
43 KOG0624|consensus 99.9 4.1E-22 8.9E-27 170.7 24.3 295 41-498 34-359 (504)
44 KOG4162|consensus 99.9 3.7E-21 7.9E-26 182.2 32.1 398 9-498 321-772 (799)
45 PRK12370 invasion protein regu 99.9 8.7E-22 1.9E-26 196.7 29.4 254 59-477 275-537 (553)
46 KOG2003|consensus 99.9 4.4E-22 9.6E-27 176.8 22.1 410 15-461 241-709 (840)
47 KOG1129|consensus 99.9 5.9E-23 1.3E-27 174.6 15.8 288 8-458 178-475 (478)
48 PRK10747 putative protoheme IX 99.9 3.9E-20 8.5E-25 177.1 34.9 300 9-476 82-391 (398)
49 PRK11189 lipoprotein NlpI; Pro 99.9 1.2E-20 2.6E-25 172.8 28.4 216 245-494 62-285 (296)
50 COG3063 PilF Tfp pilus assembl 99.9 1.5E-20 3.2E-25 152.9 25.3 215 243-484 31-245 (250)
51 KOG1129|consensus 99.9 5.3E-22 1.2E-26 168.9 17.0 213 248-489 257-472 (478)
52 TIGR00540 hemY_coli hemY prote 99.9 4.9E-20 1.1E-24 177.5 33.0 295 48-499 87-389 (409)
53 KOG1156|consensus 99.9 5.1E-19 1.1E-23 164.6 37.1 389 7-500 3-459 (700)
54 KOG1125|consensus 99.9 1.7E-21 3.6E-26 179.0 20.5 261 15-431 289-561 (579)
55 KOG1127|consensus 99.9 6.7E-21 1.4E-25 184.6 25.6 254 241-496 590-900 (1238)
56 KOG0495|consensus 99.9 4.5E-19 9.7E-24 164.7 35.2 259 253-514 556-854 (913)
57 TIGR02521 type_IV_pilW type IV 99.9 5.1E-20 1.1E-24 165.6 27.0 206 245-477 29-234 (234)
58 PRK11189 lipoprotein NlpI; Pro 99.9 5.8E-20 1.3E-24 168.2 26.1 92 24-115 39-134 (296)
59 KOG1174|consensus 99.9 9.2E-20 2E-24 160.2 24.9 304 26-459 213-518 (564)
60 PRK10747 putative protoheme IX 99.9 9.7E-19 2.1E-23 167.5 34.3 288 48-499 87-380 (398)
61 COG3063 PilF Tfp pilus assembl 99.9 4.1E-19 9E-24 144.6 22.0 189 281-498 35-225 (250)
62 TIGR02521 type_IV_pilW type IV 99.9 2.7E-19 5.9E-24 160.8 23.6 204 8-346 28-231 (234)
63 PLN02789 farnesyltranstransfer 99.8 1.4E-18 3.1E-23 158.0 25.7 223 243-494 33-269 (320)
64 KOG1156|consensus 99.8 7.5E-17 1.6E-21 150.4 37.0 411 4-476 34-469 (700)
65 KOG1127|consensus 99.8 2.9E-18 6.3E-23 166.6 26.7 373 3-476 484-914 (1238)
66 PLN02789 farnesyltranstransfer 99.8 4.9E-18 1.1E-22 154.5 26.7 194 262-484 87-311 (320)
67 COG2956 Predicted N-acetylgluc 99.8 4.1E-17 9E-22 139.3 30.2 278 49-483 39-319 (389)
68 KOG4162|consensus 99.8 8.5E-17 1.8E-21 153.0 35.3 408 12-515 285-758 (799)
69 PLN03081 pentatricopeptide (PP 99.8 2.6E-17 5.6E-22 170.7 33.1 413 9-499 121-547 (697)
70 KOG2376|consensus 99.8 5.4E-16 1.2E-20 143.2 36.9 426 11-511 12-524 (652)
71 PLN03081 pentatricopeptide (PP 99.8 2.6E-17 5.7E-22 170.6 31.5 354 9-475 156-557 (697)
72 PLN03218 maturation of RBCL 1; 99.8 1.2E-15 2.5E-20 160.0 42.4 197 249-476 581-784 (1060)
73 KOG1840|consensus 99.8 8.9E-17 1.9E-21 152.5 31.0 209 247-474 241-478 (508)
74 PLN03218 maturation of RBCL 1; 99.8 3.2E-15 7E-20 156.8 41.9 380 10-498 369-772 (1060)
75 COG2956 Predicted N-acetylgluc 99.8 1.2E-15 2.5E-20 130.6 31.3 116 9-125 33-153 (389)
76 KOG1840|consensus 99.8 4.9E-17 1.1E-21 154.2 23.9 237 243-497 195-467 (508)
77 KOG3785|consensus 99.8 3.4E-16 7.5E-21 135.3 26.5 364 20-497 31-445 (557)
78 PLN03077 Protein ECB2; Provisi 99.8 4.8E-16 1E-20 165.3 33.9 244 249-500 457-711 (857)
79 KOG1915|consensus 99.8 2.8E-14 6.1E-19 128.4 38.5 401 4-508 66-501 (677)
80 TIGR03302 OM_YfiO outer membra 99.8 3.7E-17 8.1E-22 146.1 20.5 189 7-312 29-234 (235)
81 KOG0553|consensus 99.8 1.8E-17 4E-22 141.0 17.2 121 377-497 80-200 (304)
82 PF12569 NARP1: NMDA receptor- 99.8 7.6E-15 1.6E-19 141.5 36.5 317 10-407 3-334 (517)
83 KOG0550|consensus 99.8 2E-17 4.3E-22 145.9 17.0 257 241-500 43-341 (486)
84 cd05804 StaR_like StaR_like; a 99.8 2.8E-15 6.1E-20 143.5 32.8 208 245-476 112-337 (355)
85 PRK15359 type III secretion sy 99.8 6.4E-17 1.4E-21 130.4 16.9 125 367-494 16-140 (144)
86 PLN03077 Protein ECB2; Provisi 99.8 1.4E-15 3.1E-20 161.7 32.3 237 246-496 423-673 (857)
87 TIGR03302 OM_YfiO outer membra 99.7 7E-16 1.5E-20 137.8 22.4 203 241-478 27-235 (235)
88 KOG2376|consensus 99.7 1.3E-13 2.8E-18 127.7 36.0 196 51-350 18-256 (652)
89 cd05804 StaR_like StaR_like; a 99.7 2.5E-14 5.5E-19 136.9 33.0 303 41-500 2-327 (355)
90 KOG3060|consensus 99.7 5.7E-14 1.2E-18 116.3 25.9 210 260-498 25-243 (289)
91 KOG0553|consensus 99.7 2.2E-16 4.7E-21 134.6 12.2 119 7-125 77-195 (304)
92 PRK10370 formate-dependent nit 99.7 9.3E-15 2E-19 124.4 19.8 112 372-483 67-181 (198)
93 PRK15359 type III secretion sy 99.7 2.3E-15 5E-20 121.3 15.3 125 268-424 14-138 (144)
94 PRK14720 transcript cleavage f 99.7 1.4E-14 3E-19 145.7 24.1 71 40-112 26-96 (906)
95 KOG3785|consensus 99.7 2.8E-13 6.2E-18 117.6 27.9 401 14-485 60-499 (557)
96 PF12569 NARP1: NMDA receptor- 99.7 2.6E-13 5.6E-18 130.9 29.6 308 45-476 4-335 (517)
97 KOG4340|consensus 99.7 4.4E-14 9.6E-19 119.6 21.1 360 21-485 20-453 (459)
98 KOG3060|consensus 99.6 9.2E-14 2E-18 115.1 21.3 185 245-458 50-237 (289)
99 KOG1130|consensus 99.6 1.2E-14 2.6E-19 128.4 17.2 319 11-463 17-372 (639)
100 COG3071 HemY Uncharacterized e 99.6 6.9E-12 1.5E-16 111.3 33.3 299 10-475 83-390 (400)
101 TIGR02552 LcrH_SycD type III s 99.6 2.4E-14 5.3E-19 115.6 16.9 125 366-490 5-129 (135)
102 PRK14720 transcript cleavage f 99.6 6.5E-14 1.4E-18 141.0 22.6 210 243-495 27-272 (906)
103 COG5010 TadD Flp pilus assembl 99.6 1.4E-13 3.1E-18 115.4 20.5 179 263-471 49-227 (257)
104 COG5010 TadD Flp pilus assembl 99.6 1.7E-13 3.7E-18 114.9 20.0 172 298-499 50-221 (257)
105 PRK15363 pathogenicity island 99.6 7E-14 1.5E-18 109.4 16.4 119 373-491 29-151 (157)
106 KOG1915|consensus 99.6 4.5E-11 9.7E-16 108.2 35.9 402 8-491 104-551 (677)
107 PRK10370 formate-dependent nit 99.6 3.2E-13 6.9E-18 115.0 20.8 155 253-447 22-179 (198)
108 COG3071 HemY Uncharacterized e 99.6 2.3E-11 5.1E-16 108.0 31.2 285 50-497 89-378 (400)
109 PF04733 Coatomer_E: Coatomer 99.6 2.6E-13 5.7E-18 122.2 18.3 90 393-482 182-272 (290)
110 PRK15179 Vi polysaccharide bio 99.6 5.1E-13 1.1E-17 134.0 21.7 135 318-478 86-220 (694)
111 PF04733 Coatomer_E: Coatomer 99.5 2.8E-13 6.1E-18 122.0 17.4 167 248-448 103-272 (290)
112 PRK15363 pathogenicity island 99.5 1.2E-13 2.6E-18 108.1 12.0 106 8-113 32-137 (157)
113 PRK15179 Vi polysaccharide bio 99.5 1.2E-12 2.6E-17 131.3 22.2 173 248-449 50-225 (694)
114 PRK04841 transcriptional regul 99.5 1.3E-11 2.8E-16 133.5 31.8 357 11-481 374-766 (903)
115 KOG1130|consensus 99.5 4E-13 8.8E-18 119.0 16.1 226 251-496 99-371 (639)
116 KOG1128|consensus 99.5 3.7E-13 8E-18 127.9 17.0 220 245-476 396-617 (777)
117 KOG1128|consensus 99.5 1.3E-12 2.8E-17 124.3 19.4 210 278-498 395-605 (777)
118 KOG2047|consensus 99.5 1.1E-09 2.5E-14 103.0 37.3 409 27-495 84-601 (835)
119 PRK04841 transcriptional regul 99.5 1.6E-10 3.5E-15 125.1 36.6 371 11-498 341-749 (903)
120 TIGR02552 LcrH_SycD type III s 99.5 1.3E-12 2.8E-17 105.5 15.2 116 269-413 5-120 (135)
121 PLN03088 SGT1, suppressor of 99.5 1.3E-12 2.8E-17 122.6 16.2 115 381-495 5-119 (356)
122 PLN03088 SGT1, suppressor of 99.5 5.4E-13 1.2E-17 125.1 12.5 115 12-126 3-117 (356)
123 PRK10866 outer membrane biogen 99.5 2.3E-11 5E-16 107.0 21.8 107 9-115 30-160 (243)
124 PRK10866 outer membrane biogen 99.4 9.3E-11 2E-15 103.2 23.0 182 246-436 31-236 (243)
125 PF13525 YfiO: Outer membrane 99.4 2E-11 4.3E-16 105.1 18.3 108 9-116 3-127 (203)
126 PF13525 YfiO: Outer membrane 99.4 4.9E-11 1.1E-15 102.6 20.5 178 245-431 3-197 (203)
127 KOG4648|consensus 99.4 1.6E-13 3.5E-18 118.5 4.5 238 9-349 95-332 (536)
128 COG4783 Putative Zn-dependent 99.4 1.4E-10 3.1E-15 106.1 22.9 153 278-476 303-455 (484)
129 COG4783 Putative Zn-dependent 99.4 1.6E-10 3.5E-15 105.8 21.8 152 318-495 306-457 (484)
130 KOG4340|consensus 99.4 4.5E-10 9.8E-15 95.7 22.9 318 55-504 20-369 (459)
131 KOG4648|consensus 99.4 8.5E-13 1.8E-17 114.1 5.5 241 250-494 100-349 (536)
132 KOG4234|consensus 99.4 8.5E-12 1.8E-16 99.5 10.7 120 6-125 90-214 (271)
133 TIGR02795 tol_pal_ybgF tol-pal 99.3 9.6E-12 2.1E-16 98.1 10.6 108 11-118 2-115 (119)
134 TIGR02795 tol_pal_ybgF tol-pal 99.3 4.1E-11 8.8E-16 94.5 14.0 108 378-485 2-115 (119)
135 PRK15331 chaperone protein Sic 99.3 1.1E-10 2.3E-15 92.1 14.9 122 373-495 32-153 (165)
136 KOG0543|consensus 99.3 6.3E-11 1.4E-15 106.2 14.4 118 379-496 209-341 (397)
137 PF13414 TPR_11: TPR repeat; P 99.3 1.5E-11 3.2E-16 85.6 8.0 67 411-477 2-69 (69)
138 COG4235 Cytochrome c biogenesi 99.3 2.1E-10 4.5E-15 99.4 16.4 124 366-489 144-270 (287)
139 KOG0543|consensus 99.3 3.7E-11 8E-16 107.7 11.6 118 8-125 205-337 (397)
140 PRK02603 photosystem I assembl 99.3 1.8E-10 3.8E-15 96.8 14.9 107 373-479 30-153 (172)
141 PF09976 TPR_21: Tetratricopep 99.3 1E-09 2.2E-14 89.1 18.4 133 246-405 10-145 (145)
142 PF13414 TPR_11: TPR repeat; P 99.3 6.2E-12 1.3E-16 87.6 4.3 67 10-76 2-69 (69)
143 KOG2047|consensus 99.2 2.8E-07 6.2E-12 87.3 35.4 347 4-495 342-709 (835)
144 KOG4234|consensus 99.2 2.7E-10 6E-15 91.0 13.2 116 379-494 96-216 (271)
145 PF12895 Apc3: Anaphase-promot 99.2 1.4E-11 2.9E-16 89.4 5.0 82 23-105 1-84 (84)
146 cd00189 TPR Tetratricopeptide 99.2 2.1E-10 4.6E-15 86.7 12.0 99 380-478 2-100 (100)
147 KOG1941|consensus 99.2 3.2E-09 6.9E-14 93.1 20.2 316 11-475 6-360 (518)
148 COG4785 NlpI Lipoprotein NlpI, 99.2 3.3E-09 7E-14 86.2 18.4 108 7-114 61-168 (297)
149 PRK15331 chaperone protein Sic 99.2 2.2E-10 4.8E-15 90.3 11.4 109 8-117 34-142 (165)
150 cd00189 TPR Tetratricopeptide 99.2 8.9E-11 1.9E-15 88.8 8.7 99 13-111 2-100 (100)
151 PRK02603 photosystem I assembl 99.2 9.5E-10 2.1E-14 92.4 15.3 66 281-346 35-100 (172)
152 CHL00033 ycf3 photosystem I as 99.2 1.3E-09 2.7E-14 91.3 15.9 105 376-480 33-154 (168)
153 PF13432 TPR_16: Tetratricopep 99.2 1.1E-10 2.4E-15 80.0 7.8 64 417-480 2-65 (65)
154 PF12895 Apc3: Anaphase-promot 99.2 6.7E-11 1.5E-15 85.8 7.1 81 391-472 2-84 (84)
155 PF14938 SNAP: Soluble NSF att 99.2 3.2E-09 7E-14 96.8 19.3 221 242-483 30-274 (282)
156 COG4235 Cytochrome c biogenesi 99.2 2.6E-10 5.7E-15 98.8 10.7 119 3-121 148-269 (287)
157 COG4785 NlpI Lipoprotein NlpI, 99.2 6.2E-09 1.3E-13 84.6 17.6 199 243-477 61-268 (297)
158 PF13432 TPR_16: Tetratricopep 99.1 6.1E-11 1.3E-15 81.3 5.0 63 16-78 2-64 (65)
159 PF09976 TPR_21: Tetratricopep 99.1 5.1E-09 1.1E-13 85.0 16.5 93 379-472 49-144 (145)
160 PRK10803 tol-pal system protei 99.1 2.8E-09 6E-14 94.5 15.9 110 377-486 141-257 (263)
161 PRK10803 tol-pal system protei 99.1 6.4E-10 1.4E-14 98.4 11.9 110 10-119 141-257 (263)
162 PF14938 SNAP: Soluble NSF att 99.1 3.1E-09 6.6E-14 97.0 16.3 185 261-480 29-230 (282)
163 PRK10153 DNA-binding transcrip 99.1 5.2E-09 1.1E-13 102.3 18.8 55 274-331 330-389 (517)
164 CHL00033 ycf3 photosystem I as 99.1 3E-09 6.5E-14 89.1 14.9 106 261-392 13-120 (168)
165 COG4105 ComL DNA uptake lipopr 99.1 5.2E-08 1.1E-12 82.8 22.0 188 10-314 33-237 (254)
166 PRK10153 DNA-binding transcrip 99.1 6E-09 1.3E-13 101.9 18.2 137 318-481 339-488 (517)
167 COG4105 ComL DNA uptake lipopr 99.1 1.4E-07 2.9E-12 80.3 23.7 188 246-446 33-238 (254)
168 KOG3081|consensus 99.1 1.9E-07 4.2E-12 78.9 23.7 163 249-447 110-277 (299)
169 PRK11906 transcriptional regul 99.1 2.1E-08 4.7E-13 92.7 19.0 171 249-473 257-434 (458)
170 PRK11906 transcriptional regul 99.1 2.8E-08 6.1E-13 91.9 19.6 162 274-489 241-415 (458)
171 COG0457 NrfG FOG: TPR repeat [ 99.0 2.1E-07 4.4E-12 84.5 25.5 203 247-478 59-268 (291)
172 COG0457 NrfG FOG: TPR repeat [ 99.0 9.8E-07 2.1E-11 80.0 30.0 169 250-444 98-268 (291)
173 KOG3081|consensus 99.0 8.2E-07 1.8E-11 75.2 24.8 168 280-483 107-279 (299)
174 COG3898 Uncharacterized membra 99.0 1E-06 2.2E-11 78.7 26.3 272 9-441 118-392 (531)
175 KOG1070|consensus 99.0 3.6E-07 7.8E-12 94.1 26.5 162 260-451 1510-1675(1710)
176 KOG2053|consensus 99.0 4.6E-05 1E-09 75.8 41.1 104 21-125 19-122 (932)
177 PF14559 TPR_19: Tetratricopep 99.0 8.6E-10 1.9E-14 76.4 5.4 66 22-87 2-67 (68)
178 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 6.8E-09 1.5E-13 95.8 12.3 101 407-528 70-173 (453)
179 PF13512 TPR_18: Tetratricopep 99.0 7.5E-09 1.6E-13 79.9 10.4 109 9-117 8-137 (142)
180 KOG1941|consensus 99.0 1.2E-07 2.7E-12 83.4 18.9 237 246-498 82-349 (518)
181 PF12688 TPR_5: Tetratrico pep 99.0 2.5E-08 5.4E-13 76.1 12.9 63 284-346 4-66 (120)
182 PF14559 TPR_19: Tetratricopep 98.9 3.2E-09 6.9E-14 73.6 7.2 66 423-488 2-67 (68)
183 COG1729 Uncharacterized protei 98.9 1.4E-08 3.1E-13 87.1 12.1 111 11-121 141-257 (262)
184 PF13371 TPR_9: Tetratricopept 98.9 6.4E-09 1.4E-13 73.2 8.1 69 419-487 2-70 (73)
185 PF12688 TPR_5: Tetratrico pep 98.9 8.8E-08 1.9E-12 73.1 14.8 99 248-346 2-103 (120)
186 KOG2471|consensus 98.9 1E-06 2.2E-11 80.9 24.0 163 15-293 210-381 (696)
187 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 5.9E-08 1.3E-12 90.6 15.6 131 324-483 175-305 (395)
188 KOG1070|consensus 98.9 2.1E-07 4.5E-12 95.7 20.5 211 266-476 1443-1664(1710)
189 KOG3617|consensus 98.9 2.1E-06 4.5E-11 83.9 26.2 207 247-472 912-1171(1416)
190 COG1729 Uncharacterized protei 98.9 6.5E-08 1.4E-12 83.1 13.7 97 250-346 144-243 (262)
191 KOG2471|consensus 98.9 8.6E-07 1.9E-11 81.4 21.3 117 9-125 238-381 (696)
192 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 9.3E-08 2E-12 89.3 15.1 122 286-439 174-295 (395)
193 KOG4642|consensus 98.8 4.5E-09 9.7E-14 86.8 5.6 102 7-108 6-107 (284)
194 PF13371 TPR_9: Tetratricopept 98.8 2.5E-08 5.4E-13 70.2 8.5 70 385-454 2-71 (73)
195 KOG3617|consensus 98.8 1.1E-05 2.5E-10 79.0 27.7 288 247-565 858-1197(1416)
196 COG4700 Uncharacterized protei 98.8 2E-06 4.4E-11 68.5 18.5 124 319-468 90-215 (251)
197 PF13512 TPR_18: Tetratricopep 98.8 2.5E-07 5.5E-12 71.6 13.2 89 245-333 8-99 (142)
198 KOG4555|consensus 98.8 1.2E-07 2.7E-12 70.3 10.5 104 9-112 41-148 (175)
199 KOG4555|consensus 98.8 1.7E-06 3.8E-11 64.4 16.0 105 245-349 41-146 (175)
200 KOG2300|consensus 98.8 2.6E-05 5.7E-10 71.9 26.8 443 11-495 7-540 (629)
201 PF07079 DUF1347: Protein of u 98.7 0.00018 3.9E-09 66.2 36.0 98 11-108 6-108 (549)
202 KOG0376|consensus 98.7 2.2E-08 4.9E-13 92.0 7.3 116 10-125 3-118 (476)
203 COG3898 Uncharacterized membra 98.7 6.3E-05 1.4E-09 67.6 28.0 289 16-475 89-392 (531)
204 KOG2053|consensus 98.7 6.9E-05 1.5E-09 74.6 30.9 228 56-445 20-259 (932)
205 PF06552 TOM20_plant: Plant sp 98.7 3E-07 6.4E-12 73.5 10.6 61 429-489 52-123 (186)
206 KOG1914|consensus 98.7 0.0004 8.6E-09 65.4 35.5 437 2-477 11-503 (656)
207 KOG0545|consensus 98.6 2.7E-07 5.8E-12 76.8 9.7 108 9-116 176-301 (329)
208 PF13424 TPR_12: Tetratricopep 98.6 4.5E-08 9.7E-13 69.9 4.3 63 413-475 6-75 (78)
209 COG4700 Uncharacterized protei 98.6 1.3E-05 2.9E-10 64.0 18.0 159 253-440 62-221 (251)
210 KOG2796|consensus 98.6 2.9E-05 6.3E-10 65.8 20.8 222 245-492 67-335 (366)
211 KOG4642|consensus 98.6 4.4E-07 9.4E-12 75.4 9.9 117 379-495 11-132 (284)
212 PF13424 TPR_12: Tetratricopep 98.6 1.2E-07 2.6E-12 67.7 5.9 67 375-441 2-75 (78)
213 KOG4507|consensus 98.6 1.4E-05 2.9E-10 75.4 20.6 109 385-493 614-723 (886)
214 KOG1308|consensus 98.6 1.7E-07 3.8E-12 82.1 7.7 164 388-551 124-371 (377)
215 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 3.8E-07 8.3E-12 84.5 10.3 70 373-442 70-142 (453)
216 KOG1586|consensus 98.6 3E-05 6.4E-10 64.6 19.6 201 260-495 27-246 (288)
217 PF06552 TOM20_plant: Plant sp 98.5 2.5E-07 5.5E-12 73.8 6.9 98 27-124 7-125 (186)
218 KOG0376|consensus 98.5 1.6E-07 3.5E-12 86.5 6.1 114 382-495 8-121 (476)
219 KOG0545|consensus 98.5 3.9E-06 8.4E-11 70.1 13.4 106 378-483 178-301 (329)
220 KOG1914|consensus 98.5 0.0012 2.7E-08 62.3 31.3 81 35-117 10-90 (656)
221 KOG0551|consensus 98.5 7E-07 1.5E-11 78.0 8.6 109 8-116 78-190 (390)
222 KOG1258|consensus 98.5 0.0016 3.5E-08 62.6 32.8 409 27-495 61-490 (577)
223 KOG2796|consensus 98.4 1.1E-05 2.4E-10 68.2 14.5 141 282-445 178-319 (366)
224 KOG2300|consensus 98.4 0.0015 3.2E-08 60.8 31.7 150 378-531 367-543 (629)
225 PF13428 TPR_14: Tetratricopep 98.4 6.1E-07 1.3E-11 55.2 5.2 42 447-488 2-43 (44)
226 KOG1586|consensus 98.4 6.8E-05 1.5E-09 62.5 17.8 183 245-448 32-231 (288)
227 KOG1308|consensus 98.4 4E-07 8.6E-12 80.0 4.5 105 7-111 110-214 (377)
228 KOG3616|consensus 98.4 0.00022 4.7E-09 69.5 22.7 242 250-506 768-1059(1636)
229 KOG1585|consensus 98.3 0.00022 4.8E-09 59.9 19.7 178 244-441 28-219 (308)
230 PF04184 ST7: ST7 protein; In 98.3 0.00017 3.7E-09 67.4 21.1 56 52-109 175-230 (539)
231 KOG1585|consensus 98.3 0.00051 1.1E-08 57.9 20.4 187 282-489 32-237 (308)
232 KOG0551|consensus 98.3 8.4E-06 1.8E-10 71.5 10.0 107 377-483 80-190 (390)
233 PF05843 Suf: Suppressor of fo 98.2 5.7E-05 1.2E-09 68.7 15.6 139 320-484 3-145 (280)
234 PF13428 TPR_14: Tetratricopep 98.2 3.3E-06 7E-11 51.9 5.1 42 248-289 2-43 (44)
235 PF04184 ST7: ST7 protein; In 98.2 0.00023 5E-09 66.7 19.0 194 253-486 174-386 (539)
236 KOG0985|consensus 98.2 0.0011 2.4E-08 67.2 24.0 77 17-105 1054-1130(1666)
237 PF00515 TPR_1: Tetratricopept 98.2 4.3E-06 9.4E-11 48.1 4.7 33 447-479 2-34 (34)
238 KOG2610|consensus 98.1 0.00028 6E-09 62.3 16.8 170 285-480 107-283 (491)
239 KOG2610|consensus 98.1 0.00016 3.5E-09 63.7 15.3 164 250-439 106-274 (491)
240 PF13431 TPR_17: Tetratricopep 98.1 2.7E-06 5.8E-11 48.5 3.0 32 435-466 2-33 (34)
241 PF07719 TPR_2: Tetratricopept 98.1 8.4E-06 1.8E-10 46.9 4.9 33 447-479 2-34 (34)
242 PF13431 TPR_17: Tetratricopep 98.1 3.2E-06 6.9E-11 48.2 3.0 33 400-432 1-33 (34)
243 KOG1258|consensus 98.1 0.012 2.5E-07 57.0 32.1 124 374-497 293-417 (577)
244 KOG1550|consensus 98.1 0.0018 3.8E-08 65.3 23.8 113 9-125 242-372 (552)
245 PF05843 Suf: Suppressor of fo 98.1 0.00027 5.9E-09 64.3 16.5 139 249-413 3-142 (280)
246 PF02259 FAT: FAT domain; Int 98.1 0.0034 7.3E-08 60.1 24.7 139 318-478 146-341 (352)
247 KOG1550|consensus 98.0 0.002 4.4E-08 64.8 23.4 284 26-479 227-542 (552)
248 PF10300 DUF3808: Protein of u 98.0 0.0037 8.1E-08 61.4 24.4 113 364-476 253-377 (468)
249 KOG3616|consensus 98.0 0.0022 4.7E-08 62.9 21.3 172 284-468 664-846 (1636)
250 PF13281 DUF4071: Domain of un 98.0 0.0021 4.6E-08 59.5 20.4 172 281-481 141-340 (374)
251 PF00515 TPR_1: Tetratricopept 98.0 1.3E-05 2.8E-10 46.1 4.0 33 11-43 1-33 (34)
252 COG5107 RNA14 Pre-mRNA 3'-end 98.0 0.016 3.4E-07 53.9 28.5 205 269-479 290-535 (660)
253 COG2976 Uncharacterized protei 98.0 0.0017 3.8E-08 53.0 17.0 119 302-444 73-191 (207)
254 PF07719 TPR_2: Tetratricopept 98.0 1.9E-05 4.2E-10 45.4 4.6 34 11-44 1-34 (34)
255 PF13281 DUF4071: Domain of un 97.9 0.0029 6.2E-08 58.7 20.3 172 246-447 140-340 (374)
256 KOG0985|consensus 97.9 0.0047 1E-07 63.0 22.9 77 23-109 1087-1163(1666)
257 PF10345 Cohesin_load: Cohesin 97.9 0.043 9.4E-07 56.4 33.2 138 320-463 303-466 (608)
258 PF10345 Cohesin_load: Cohesin 97.9 0.047 1E-06 56.2 32.0 236 260-495 152-464 (608)
259 COG2976 Uncharacterized protei 97.9 0.0021 4.5E-08 52.6 15.8 98 380-479 91-192 (207)
260 KOG1464|consensus 97.8 0.0043 9.4E-08 53.3 18.2 264 259-551 39-348 (440)
261 PF02259 FAT: FAT domain; Int 97.8 0.012 2.7E-07 56.2 23.9 123 374-496 142-308 (352)
262 COG3118 Thioredoxin domain-con 97.8 0.003 6.6E-08 55.4 17.0 148 250-426 137-286 (304)
263 KOG0530|consensus 97.8 0.0093 2E-07 51.2 19.1 195 262-485 93-308 (318)
264 PF03704 BTAD: Bacterial trans 97.8 0.00038 8.2E-09 56.7 10.7 98 10-107 5-124 (146)
265 PF13181 TPR_8: Tetratricopept 97.7 6.1E-05 1.3E-09 43.2 4.2 33 447-479 2-34 (34)
266 PF10300 DUF3808: Protein of u 97.7 0.0071 1.5E-07 59.5 19.9 122 260-407 246-376 (468)
267 PF03704 BTAD: Bacterial trans 97.7 0.0017 3.7E-08 52.8 13.3 93 382-474 10-124 (146)
268 KOG0890|consensus 97.7 0.15 3.4E-06 57.6 31.0 152 297-476 1645-1834(2382)
269 KOG0890|consensus 97.6 0.12 2.6E-06 58.5 28.8 118 374-493 1666-1802(2382)
270 KOG0530|consensus 97.5 0.023 5.1E-07 48.8 18.2 172 257-457 53-232 (318)
271 PF04910 Tcf25: Transcriptiona 97.5 0.037 8.1E-07 52.2 21.2 102 378-479 103-226 (360)
272 COG2909 MalT ATP-dependent tra 97.5 0.16 3.5E-06 51.9 29.5 204 247-472 458-685 (894)
273 COG3118 Thioredoxin domain-con 97.5 0.019 4.1E-07 50.6 17.3 134 281-443 134-267 (304)
274 PF13181 TPR_8: Tetratricopept 97.5 0.00021 4.6E-09 40.9 3.7 32 12-43 2-33 (34)
275 PF08631 SPO22: Meiosis protei 97.4 0.088 1.9E-06 48.1 26.4 99 246-347 34-150 (278)
276 COG0790 FOG: TPR repeat, SEL1 97.4 0.098 2.1E-06 48.4 25.0 186 258-480 52-271 (292)
277 PF14853 Fis1_TPR_C: Fis1 C-te 97.4 0.0012 2.5E-08 41.8 6.9 47 447-493 2-48 (53)
278 KOG2396|consensus 97.3 0.15 3.2E-06 48.5 32.5 94 29-122 89-183 (568)
279 PF07079 DUF1347: Protein of u 97.3 0.17 3.6E-06 47.5 30.1 182 255-437 306-520 (549)
280 KOG2041|consensus 97.3 0.23 5E-06 49.1 26.9 143 245-404 794-936 (1189)
281 KOG1310|consensus 97.3 0.00073 1.6E-08 63.4 6.8 111 4-114 367-480 (758)
282 PF08424 NRDE-2: NRDE-2, neces 97.2 0.043 9.2E-07 51.2 18.2 139 263-409 47-185 (321)
283 KOG2041|consensus 97.2 0.14 3.1E-06 50.5 21.4 196 254-472 741-936 (1189)
284 PF13176 TPR_7: Tetratricopept 97.2 0.00086 1.9E-08 38.8 4.2 28 448-475 1-28 (36)
285 PF13174 TPR_6: Tetratricopept 97.2 0.00062 1.3E-08 38.6 3.5 31 448-478 2-32 (33)
286 PF13174 TPR_6: Tetratricopept 97.1 0.00072 1.6E-08 38.3 3.6 33 12-44 1-33 (33)
287 PF04781 DUF627: Protein of un 97.1 0.0029 6.2E-08 46.7 7.3 93 17-109 2-108 (111)
288 KOG3824|consensus 97.1 0.0018 4E-08 56.5 7.4 72 383-454 121-192 (472)
289 KOG4507|consensus 97.1 0.00099 2.1E-08 63.4 6.2 107 18-124 614-721 (886)
290 KOG3824|consensus 97.1 0.0017 3.6E-08 56.8 7.0 77 11-87 116-192 (472)
291 PRK10941 hypothetical protein; 97.1 0.0069 1.5E-07 54.0 11.0 74 414-487 183-256 (269)
292 PF08424 NRDE-2: NRDE-2, neces 97.1 0.039 8.5E-07 51.4 16.6 146 268-442 6-184 (321)
293 PF08631 SPO22: Meiosis protei 97.1 0.22 4.8E-06 45.5 26.0 67 246-312 83-152 (278)
294 COG0790 FOG: TPR repeat, SEL1 97.1 0.16 3.4E-06 47.0 20.3 167 291-495 51-237 (292)
295 COG2909 MalT ATP-dependent tra 97.0 0.48 1E-05 48.6 27.1 212 245-476 413-648 (894)
296 COG4649 Uncharacterized protei 97.0 0.13 2.8E-06 41.4 17.0 147 251-423 62-211 (221)
297 PF14561 TPR_20: Tetratricopep 97.0 0.01 2.2E-07 42.9 9.2 67 431-497 7-75 (90)
298 PF09613 HrpB1_HrpK: Bacterial 97.0 0.0092 2E-07 47.7 9.3 89 8-96 7-95 (160)
299 PF09613 HrpB1_HrpK: Bacterial 96.9 0.13 2.9E-06 41.3 15.6 115 378-494 10-124 (160)
300 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.39 8.5E-06 45.1 27.4 78 33-110 30-107 (660)
301 PF09986 DUF2225: Uncharacteri 96.9 0.053 1.1E-06 46.8 14.2 96 294-408 90-195 (214)
302 PF13176 TPR_7: Tetratricopept 96.9 0.0017 3.7E-08 37.6 3.5 27 13-39 1-27 (36)
303 KOG2396|consensus 96.8 0.024 5.1E-07 53.5 12.1 88 398-485 91-179 (568)
304 PF04781 DUF627: Protein of un 96.8 0.021 4.4E-07 42.3 9.3 92 384-475 2-107 (111)
305 PRK10941 hypothetical protein; 96.8 0.02 4.4E-07 51.1 11.3 77 379-455 182-258 (269)
306 PF12968 DUF3856: Domain of Un 96.8 0.02 4.3E-07 42.5 9.0 94 15-108 13-129 (144)
307 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.0082 1.8E-07 38.0 6.1 37 414-450 3-39 (53)
308 PF14561 TPR_20: Tetratricopep 96.7 0.0069 1.5E-07 43.8 6.6 74 30-103 7-82 (90)
309 PF10602 RPN7: 26S proteasome 96.6 0.16 3.4E-06 42.5 15.0 106 245-350 34-145 (177)
310 smart00028 TPR Tetratricopepti 96.6 0.0031 6.8E-08 35.3 3.6 31 448-478 3-33 (34)
311 PF12968 DUF3856: Domain of Un 96.6 0.11 2.4E-06 38.8 11.8 91 385-475 16-129 (144)
312 KOG3364|consensus 96.6 0.067 1.5E-06 41.0 11.1 85 411-495 31-120 (149)
313 PF10602 RPN7: 26S proteasome 96.6 0.034 7.5E-07 46.4 10.7 108 281-408 36-143 (177)
314 PF04910 Tcf25: Transcriptiona 96.6 0.095 2.1E-06 49.5 14.6 103 245-347 101-222 (360)
315 KOG1310|consensus 96.5 0.01 2.3E-07 56.1 7.9 106 377-482 373-481 (758)
316 COG3914 Spy Predicted O-linked 96.5 0.13 2.8E-06 49.9 15.1 125 373-497 60-193 (620)
317 KOG3783|consensus 96.5 0.43 9.4E-06 46.0 18.0 91 28-120 250-344 (546)
318 COG4976 Predicted methyltransf 96.4 0.0058 1.3E-07 51.2 4.7 60 422-481 5-64 (287)
319 PRK13184 pknD serine/threonine 96.4 1.9 4.1E-05 46.1 29.3 101 16-117 480-590 (932)
320 KOG4814|consensus 96.3 0.36 7.7E-06 47.4 16.5 97 380-476 356-458 (872)
321 COG4976 Predicted methyltransf 96.3 0.0069 1.5E-07 50.8 4.5 62 53-114 3-64 (287)
322 smart00028 TPR Tetratricopepti 96.2 0.0078 1.7E-07 33.6 3.7 31 13-43 3-33 (34)
323 KOG1464|consensus 96.2 0.38 8.2E-06 41.9 14.7 194 252-460 70-286 (440)
324 TIGR02561 HrpB1_HrpK type III 96.2 0.074 1.6E-06 41.8 9.6 88 9-96 8-95 (153)
325 KOG3364|consensus 96.1 0.22 4.9E-06 38.2 11.5 79 377-455 31-114 (149)
326 TIGR02561 HrpB1_HrpK type III 96.0 0.16 3.4E-06 40.0 10.6 82 381-462 13-94 (153)
327 KOG3783|consensus 95.9 1.9 4.1E-05 41.9 23.7 66 414-479 451-524 (546)
328 KOG1463|consensus 95.9 1.3 2.9E-05 40.1 21.8 109 382-493 213-331 (411)
329 KOG2422|consensus 95.8 1.1 2.5E-05 43.6 17.4 88 260-347 251-371 (665)
330 COG5191 Uncharacterized conser 95.8 0.024 5.2E-07 50.0 6.0 85 403-487 98-183 (435)
331 COG5159 RPN6 26S proteasome re 95.7 1.3 2.9E-05 39.0 21.4 170 286-478 130-317 (421)
332 PF15015 NYD-SP12_N: Spermatog 95.7 0.042 9.1E-07 50.7 7.4 113 12-124 177-310 (569)
333 KOG4814|consensus 95.7 0.044 9.6E-07 53.3 7.8 98 12-109 355-458 (872)
334 COG4649 Uncharacterized protei 95.6 0.95 2.1E-05 36.7 16.3 115 378-493 94-213 (221)
335 KOG0529|consensus 95.5 1.5 3.2E-05 41.1 16.3 133 360-492 91-241 (421)
336 PF09986 DUF2225: Uncharacteri 95.3 0.6 1.3E-05 40.4 12.9 65 377-441 117-194 (214)
337 PRK15180 Vi polysaccharide bio 95.3 0.16 3.4E-06 47.9 9.7 125 258-411 300-424 (831)
338 PRK15180 Vi polysaccharide bio 95.3 0.095 2.1E-06 49.3 8.2 122 294-444 302-423 (831)
339 KOG1839|consensus 95.2 0.38 8.2E-06 51.6 13.0 169 286-475 937-1128(1236)
340 COG3914 Spy Predicted O-linked 95.0 1.6 3.5E-05 42.8 15.7 72 266-340 50-123 (620)
341 PF13374 TPR_10: Tetratricopep 94.9 0.073 1.6E-06 31.8 4.5 30 447-476 3-32 (42)
342 COG1747 Uncharacterized N-term 94.8 4.2 9.2E-05 39.3 20.4 89 253-347 72-160 (711)
343 COG2912 Uncharacterized conser 94.7 0.3 6.6E-06 43.0 9.2 70 415-484 184-253 (269)
344 smart00727 STI1 Heat shock cha 94.6 0.079 1.7E-06 31.6 4.1 39 507-545 1-40 (41)
345 PF04053 Coatomer_WDAD: Coatom 94.6 2.3 5E-05 41.6 16.1 130 257-440 271-401 (443)
346 COG5191 Uncharacterized conser 94.6 0.073 1.6E-06 47.1 5.3 79 373-451 102-181 (435)
347 KOG1839|consensus 94.6 0.79 1.7E-05 49.3 13.6 179 245-441 930-1128(1236)
348 PF10579 Rapsyn_N: Rapsyn N-te 94.4 0.68 1.5E-05 31.9 8.3 63 246-308 5-70 (80)
349 PF07720 TPR_3: Tetratricopept 94.3 0.18 3.9E-06 28.9 4.9 32 447-478 2-35 (36)
350 KOG0546|consensus 94.3 0.13 2.8E-06 46.6 6.3 116 10-125 221-355 (372)
351 KOG3807|consensus 94.3 4.1 8.8E-05 36.9 19.5 197 251-487 188-403 (556)
352 COG5159 RPN6 26S proteasome re 94.2 3.8 8.3E-05 36.3 18.4 98 251-349 129-237 (421)
353 PF13374 TPR_10: Tetratricopep 94.1 0.13 2.8E-06 30.7 4.5 29 248-276 3-31 (42)
354 KOG1463|consensus 94.0 4.7 0.0001 36.8 21.8 172 252-444 133-319 (411)
355 PF15015 NYD-SP12_N: Spermatog 94.0 0.38 8.3E-06 44.7 8.8 90 385-474 183-290 (569)
356 COG2912 Uncharacterized conser 93.9 0.67 1.5E-05 40.9 9.8 70 246-315 180-249 (269)
357 KOG0529|consensus 93.9 2.6 5.7E-05 39.5 13.8 102 393-494 90-197 (421)
358 KOG1538|consensus 93.8 3.1 6.8E-05 41.3 14.8 206 250-472 588-830 (1081)
359 PF07720 TPR_3: Tetratricopept 93.8 0.21 4.6E-06 28.6 4.4 32 12-43 2-35 (36)
360 COG3629 DnrI DNA-binding trans 93.7 1.1 2.4E-05 40.1 10.9 65 245-309 151-215 (280)
361 PF12862 Apc5: Anaphase-promot 93.6 0.62 1.3E-05 34.2 8.0 56 257-312 8-72 (94)
362 KOG0546|consensus 93.6 0.15 3.2E-06 46.3 5.4 112 384-495 228-358 (372)
363 PF10516 SHNi-TPR: SHNi-TPR; 93.6 0.14 3.1E-06 29.7 3.5 30 447-476 2-31 (38)
364 PF10579 Rapsyn_N: Rapsyn N-te 93.5 0.73 1.6E-05 31.8 7.3 62 285-346 10-71 (80)
365 PF11207 DUF2989: Protein of u 93.3 4 8.6E-05 34.5 12.8 78 389-467 117-199 (203)
366 PF07721 TPR_4: Tetratricopept 93.2 0.13 2.9E-06 26.9 2.9 24 80-103 2-25 (26)
367 PF12862 Apc5: Anaphase-promot 93.2 0.46 1E-05 34.8 6.7 55 423-477 9-72 (94)
368 PF10516 SHNi-TPR: SHNi-TPR; 93.2 0.14 3E-06 29.7 3.0 29 12-40 2-30 (38)
369 KOG2581|consensus 93.1 2.5 5.5E-05 39.4 12.3 211 247-482 126-356 (493)
370 KOG3807|consensus 92.8 7.5 0.00016 35.3 18.8 53 54-108 193-245 (556)
371 PF07721 TPR_4: Tetratricopept 92.7 0.18 3.9E-06 26.4 2.9 23 448-470 3-25 (26)
372 KOG4151|consensus 92.5 0.47 1E-05 48.0 7.5 119 7-125 49-173 (748)
373 COG4941 Predicted RNA polymera 92.2 9 0.00019 35.0 15.5 97 391-488 309-407 (415)
374 KOG2581|consensus 92.2 10 0.00022 35.6 20.4 139 287-445 132-280 (493)
375 PRK13184 pknD serine/threonine 91.9 21 0.00046 38.6 23.6 55 262-317 534-588 (932)
376 KOG0686|consensus 91.9 9.3 0.0002 35.9 14.3 178 378-556 150-358 (466)
377 KOG1538|consensus 91.7 15 0.00032 36.9 16.1 58 48-105 588-658 (1081)
378 COG3629 DnrI DNA-binding trans 91.5 1.3 2.9E-05 39.7 8.5 63 412-474 153-215 (280)
379 KOG2422|consensus 91.3 16 0.00035 36.1 23.3 165 294-478 251-451 (665)
380 PF10373 EST1_DNA_bind: Est1 D 91.3 0.89 1.9E-05 41.7 7.8 62 431-492 1-62 (278)
381 KOG0128|consensus 91.3 20 0.00044 37.2 24.8 77 44-120 78-154 (881)
382 PF04053 Coatomer_WDAD: Coatom 91.1 7.5 0.00016 38.1 14.0 132 248-437 296-427 (443)
383 PF11207 DUF2989: Protein of u 91.0 2.5 5.5E-05 35.6 9.1 86 253-339 112-199 (203)
384 PF12739 TRAPPC-Trs85: ER-Golg 90.7 18 0.00038 35.4 16.9 94 377-477 299-401 (414)
385 smart00386 HAT HAT (Half-A-TPR 89.9 1 2.3E-05 24.7 4.5 30 460-489 1-30 (33)
386 KOG0128|consensus 89.8 28 0.0006 36.3 27.6 97 25-122 93-192 (881)
387 COG3947 Response regulator con 89.6 1.4 2.9E-05 39.2 6.7 59 414-472 281-339 (361)
388 COG1747 Uncharacterized N-term 89.0 24 0.00052 34.5 19.5 182 277-492 62-251 (711)
389 COG4455 ImpE Protein of avirul 88.9 3.9 8.5E-05 34.8 8.5 74 254-327 8-81 (273)
390 TIGR03504 FimV_Cterm FimV C-te 88.9 1.8 3.8E-05 26.2 4.9 23 286-308 4-26 (44)
391 PF10373 EST1_DNA_bind: Est1 D 88.8 1.6 3.5E-05 40.0 7.3 62 397-458 1-62 (278)
392 PF04190 DUF410: Protein of un 88.6 18 0.0004 32.6 19.5 29 374-402 86-114 (260)
393 TIGR03504 FimV_Cterm FimV C-te 88.5 2.7 5.8E-05 25.4 5.5 25 450-474 3-27 (44)
394 PF09670 Cas_Cas02710: CRISPR- 88.3 25 0.00054 33.8 15.0 63 248-310 132-198 (379)
395 smart00386 HAT HAT (Half-A-TPR 88.2 1.4 3E-05 24.2 4.2 30 261-290 1-30 (33)
396 smart00299 CLH Clathrin heavy 87.7 13 0.00027 29.7 15.0 51 254-305 14-64 (140)
397 COG3947 Response regulator con 87.4 4 8.6E-05 36.4 8.0 59 249-307 281-339 (361)
398 PF12739 TRAPPC-Trs85: ER-Golg 87.2 28 0.00061 34.1 14.9 43 82-125 211-253 (414)
399 PF14863 Alkyl_sulf_dimr: Alky 87.1 1.1 2.4E-05 35.5 4.3 49 11-59 70-118 (141)
400 KOG2114|consensus 86.7 44 0.00095 35.0 17.6 106 289-397 342-450 (933)
401 PF09670 Cas_Cas02710: CRISPR- 86.4 25 0.00055 33.8 13.8 61 285-346 135-197 (379)
402 PF14863 Alkyl_sulf_dimr: Alky 86.3 3.8 8.3E-05 32.6 6.9 50 446-495 70-119 (141)
403 PF00244 14-3-3: 14-3-3 protei 86.2 23 0.00051 31.3 13.2 46 429-474 143-197 (236)
404 PRK11619 lytic murein transgly 86.1 47 0.001 34.7 38.0 25 12-36 34-58 (644)
405 COG4455 ImpE Protein of avirul 85.7 17 0.00037 31.1 10.4 62 53-114 9-70 (273)
406 KOG0686|consensus 84.9 25 0.00054 33.3 12.1 106 282-405 151-256 (466)
407 COG5536 BET4 Protein prenyltra 83.3 29 0.00063 31.0 11.2 127 366-492 96-239 (328)
408 KOG1920|consensus 83.3 64 0.0014 35.4 15.7 113 319-438 940-1052(1265)
409 cd02682 MIT_AAA_Arch MIT: doma 83.2 2.7 5.9E-05 28.9 4.2 31 9-39 4-34 (75)
410 PF10255 Paf67: RNA polymerase 83.1 9.3 0.0002 36.6 9.1 97 381-478 125-231 (404)
411 KOG0276|consensus 82.7 18 0.00039 36.0 10.8 31 376-406 664-694 (794)
412 cd02682 MIT_AAA_Arch MIT: doma 82.6 11 0.00025 26.0 7.0 31 245-275 4-34 (75)
413 KOG4151|consensus 82.5 5.2 0.00011 40.9 7.5 101 384-484 59-165 (748)
414 PF12854 PPR_1: PPR repeat 82.2 3.8 8.3E-05 23.0 4.0 25 412-436 7-31 (34)
415 PF11817 Foie-gras_1: Foie gra 82.2 22 0.00048 31.8 10.9 61 378-438 178-244 (247)
416 PF10255 Paf67: RNA polymerase 82.1 2.3 5E-05 40.5 4.7 59 48-107 125-192 (404)
417 PF11817 Foie-gras_1: Foie gra 81.3 20 0.00042 32.1 10.2 85 261-345 152-245 (247)
418 PF00244 14-3-3: 14-3-3 protei 80.7 40 0.00088 29.9 14.8 60 249-308 3-64 (236)
419 PF12854 PPR_1: PPR repeat 80.6 3.1 6.8E-05 23.4 3.2 27 10-36 6-32 (34)
420 COG5536 BET4 Protein prenyltra 80.5 20 0.00043 32.0 9.3 121 373-493 61-197 (328)
421 cd02683 MIT_1 MIT: domain cont 80.5 3.8 8.2E-05 28.6 4.2 32 8-39 3-34 (77)
422 smart00299 CLH Clathrin heavy 80.3 28 0.0006 27.7 12.4 119 329-491 18-136 (140)
423 PHA02537 M terminase endonucle 80.1 7 0.00015 34.0 6.6 111 255-365 91-225 (230)
424 KOG4014|consensus 80.1 33 0.00072 28.5 16.0 30 459-490 181-210 (248)
425 PF04212 MIT: MIT (microtubule 77.9 5.8 0.00012 26.9 4.5 32 9-40 3-34 (69)
426 PRK11619 lytic murein transgly 77.9 95 0.002 32.5 31.6 79 33-115 84-165 (644)
427 cd02681 MIT_calpain7_1 MIT: do 77.9 5.5 0.00012 27.6 4.3 32 9-40 4-35 (76)
428 PHA02537 M terminase endonucle 76.0 9.2 0.0002 33.3 6.1 92 21-112 93-211 (230)
429 PF04190 DUF410: Protein of un 75.8 61 0.0013 29.3 20.4 101 244-344 7-116 (260)
430 PF04097 Nic96: Nup93/Nic96; 75.6 1.1E+02 0.0023 32.0 17.6 43 245-308 412-454 (613)
431 KOG2758|consensus 75.3 67 0.0015 29.5 15.4 76 365-440 116-195 (432)
432 PF13041 PPR_2: PPR repeat fam 74.8 17 0.00038 22.5 5.9 28 282-309 4-31 (50)
433 KOG2561|consensus 73.1 17 0.00037 34.5 7.4 94 381-474 166-295 (568)
434 cd02680 MIT_calpain7_2 MIT: do 72.3 7.1 0.00015 27.0 3.7 32 9-40 4-35 (75)
435 KOG0276|consensus 71.7 53 0.0011 33.0 10.5 77 386-467 645-729 (794)
436 PF09797 NatB_MDM20: N-acetylt 71.2 42 0.0009 32.2 10.2 48 260-307 196-243 (365)
437 COG5187 RPN7 26S proteasome re 71.2 80 0.0017 28.5 12.9 133 254-409 82-223 (412)
438 PF13041 PPR_2: PPR repeat fam 70.4 23 0.00049 21.9 6.1 26 381-406 6-31 (50)
439 PF01239 PPTA: Protein prenylt 70.3 15 0.00033 19.9 4.6 29 465-493 2-30 (31)
440 KOG2561|consensus 70.0 34 0.00074 32.7 8.6 100 247-346 163-295 (568)
441 KOG0687|consensus 69.8 93 0.002 28.7 13.4 107 244-350 101-213 (393)
442 TIGR02710 CRISPR-associated pr 69.6 99 0.0021 29.6 11.7 55 16-70 135-196 (380)
443 KOG2063|consensus 69.6 1.7E+02 0.0037 31.7 18.3 32 245-276 502-533 (877)
444 KOG0687|consensus 68.3 1E+02 0.0022 28.5 11.5 105 281-408 104-211 (393)
445 PF13226 DUF4034: Domain of un 68.3 65 0.0014 29.2 9.8 65 431-495 62-148 (277)
446 cd02678 MIT_VPS4 MIT: domain c 67.8 13 0.00028 25.8 4.3 32 9-40 4-35 (75)
447 PF11846 DUF3366: Domain of un 67.6 23 0.00049 30.3 6.8 44 433-477 132-175 (193)
448 PF09205 DUF1955: Domain of un 67.6 47 0.001 26.0 7.4 50 259-308 98-147 (161)
449 smart00745 MIT Microtubule Int 66.7 14 0.00031 25.6 4.5 31 9-39 6-36 (77)
450 KOG2063|consensus 65.7 2E+02 0.0044 31.1 15.1 179 283-474 506-712 (877)
451 PF01535 PPR: PPR repeat; Int 65.0 13 0.00028 19.7 3.4 22 451-472 5-26 (31)
452 cd02684 MIT_2 MIT: domain cont 64.5 15 0.00033 25.4 4.2 31 10-40 5-35 (75)
453 PF08311 Mad3_BUB1_I: Mad3/BUB 64.1 68 0.0015 25.1 12.1 33 373-405 94-126 (126)
454 KOG4014|consensus 64.0 86 0.0019 26.2 15.0 184 245-476 32-234 (248)
455 KOG4521|consensus 63.8 2.4E+02 0.0052 31.3 14.6 183 281-477 920-1134(1480)
456 PF07219 HemY_N: HemY protein 63.2 25 0.00055 26.5 5.6 51 9-59 57-107 (108)
457 COG5187 RPN7 26S proteasome re 63.1 1.2E+02 0.0026 27.5 15.6 148 277-444 69-224 (412)
458 cd02656 MIT MIT: domain contai 62.7 18 0.00039 25.0 4.4 30 10-39 5-34 (75)
459 COG3014 Uncharacterized protei 61.5 1.4E+02 0.003 27.8 16.5 81 267-347 41-154 (449)
460 cd00280 TRFH Telomeric Repeat 61.4 40 0.00088 28.1 6.5 38 452-490 117-154 (200)
461 PF04212 MIT: MIT (microtubule 61.3 26 0.00057 23.7 4.9 28 247-274 5-32 (69)
462 PF07219 HemY_N: HemY protein 60.4 71 0.0015 24.1 7.6 52 244-295 56-107 (108)
463 cd02677 MIT_SNX15 MIT: domain 60.1 17 0.00037 25.2 3.8 31 9-39 4-34 (75)
464 KOG2114|consensus 59.6 2.4E+02 0.0053 30.0 16.8 93 385-481 497-596 (933)
465 TIGR00756 PPR pentatricopeptid 59.5 20 0.00043 19.5 3.6 22 417-438 5-26 (35)
466 PF04348 LppC: LppC putative l 59.1 3.1 6.7E-05 42.0 0.0 99 282-405 25-125 (536)
467 PF09797 NatB_MDM20: N-acetylt 59.0 76 0.0016 30.5 9.4 47 295-344 197-243 (365)
468 PF13226 DUF4034: Domain of un 58.9 84 0.0018 28.5 8.8 109 17-125 6-145 (277)
469 PF11846 DUF3366: Domain of un 58.6 40 0.00086 28.8 6.7 49 395-444 128-176 (193)
470 cd02681 MIT_calpain7_1 MIT: do 57.4 33 0.00072 23.8 4.8 30 246-275 5-34 (76)
471 KOG1920|consensus 57.4 3.1E+02 0.0068 30.6 13.9 19 327-345 889-907 (1265)
472 PF02064 MAS20: MAS20 protein 57.3 41 0.00088 26.0 5.7 34 450-483 67-100 (121)
473 PRK15490 Vi polysaccharide bio 56.4 53 0.0012 33.3 7.8 82 20-103 17-98 (578)
474 COG3014 Uncharacterized protei 55.5 1.8E+02 0.0039 27.2 12.2 181 302-486 42-253 (449)
475 PF04097 Nic96: Nup93/Nic96; 54.9 2.7E+02 0.0059 29.1 22.0 38 307-344 403-440 (613)
476 PF12583 TPPII_N: Tripeptidyl 54.8 73 0.0016 24.8 6.5 51 242-292 71-121 (139)
477 cd02677 MIT_SNX15 MIT: domain 54.6 18 0.0004 25.0 3.2 15 460-474 20-34 (75)
478 PF10952 DUF2753: Protein of u 54.5 67 0.0014 24.7 6.1 31 448-478 52-86 (140)
479 smart00671 SEL1 Sel1-like repe 54.4 36 0.00078 18.8 4.1 28 448-475 3-34 (36)
480 KOG4459|consensus 52.4 2.4E+02 0.0051 27.6 11.7 113 11-123 31-177 (471)
481 cd02679 MIT_spastin MIT: domai 52.4 32 0.00069 24.2 4.0 29 11-39 8-36 (79)
482 COG4941 Predicted RNA polymera 52.1 2E+02 0.0044 26.8 16.5 131 260-418 269-405 (415)
483 PF08238 Sel1: Sel1 repeat; I 50.2 42 0.00092 19.0 4.0 15 461-475 23-37 (39)
484 KOG4563|consensus 50.1 25 0.00054 32.7 4.1 62 7-68 37-106 (400)
485 PF04348 LppC: LppC putative l 50.1 5.4 0.00012 40.4 0.0 121 375-495 21-147 (536)
486 PRK12798 chemotaxis protein; R 49.1 2.6E+02 0.0056 27.1 23.6 227 246-496 111-347 (421)
487 KOG4521|consensus 48.7 4.3E+02 0.0094 29.6 18.1 84 249-336 985-1072(1480)
488 PF05053 Menin: Menin; InterP 48.6 1.8E+02 0.0039 29.3 9.6 33 374-406 314-346 (618)
489 PF09205 DUF1955: Domain of un 48.6 1.3E+02 0.0029 23.7 13.1 54 387-440 95-148 (161)
490 PF13812 PPR_3: Pentatricopept 48.2 45 0.00097 18.1 4.2 26 250-275 4-29 (34)
491 PRK15490 Vi polysaccharide bio 47.9 1.4E+02 0.0031 30.4 9.2 57 412-470 42-98 (578)
492 KOG2758|consensus 47.7 2.3E+02 0.0051 26.2 20.0 192 267-480 115-322 (432)
493 PF04090 RNA_pol_I_TF: RNA pol 47.4 1.8E+02 0.0039 24.9 10.5 45 245-289 39-83 (199)
494 PF10952 DUF2753: Protein of u 47.1 1.3E+02 0.0029 23.2 7.3 29 318-346 50-78 (140)
495 KOG4279|consensus 46.1 2.9E+02 0.0062 29.1 10.8 110 373-483 273-403 (1226)
496 PF05053 Menin: Menin; InterP 45.7 2.6E+02 0.0056 28.3 10.2 78 382-474 261-346 (618)
497 PF12753 Nro1: Nuclear pore co 45.6 38 0.00083 32.1 4.7 31 95-125 130-160 (404)
498 PF02184 HAT: HAT (Half-A-TPR) 45.5 54 0.0012 18.3 3.6 26 461-487 2-27 (32)
499 cd02679 MIT_spastin MIT: domai 45.4 48 0.001 23.3 4.0 34 427-475 4-37 (79)
500 PF14929 TAF1_subA: TAF RNA Po 44.8 3.6E+02 0.0078 27.6 14.7 33 9-41 45-77 (547)
No 1
>KOG0548|consensus
Probab=100.00 E-value=3.8e-50 Score=362.10 Aligned_cols=531 Identities=50% Similarity=0.807 Sum_probs=469.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHh
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALS 90 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 90 (570)
+..+..+|+..+..|+|+.|+.+|..+|.++|.+...|.+...+|..+|+|++|++.-.+.++++|+++.+|.++|..+.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHH
Q psy3014 91 YLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKE 170 (570)
Q Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (570)
-+|+|++|+..|.+.++.+|+|.....+++.++.. ... ....+..|.+...+..+|.....+.++.|...+..
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~--~~~-----~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLE--DYA-----ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEI 154 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhH--HHH-----hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence 99999999999999999999999999999988833 111 17788999999999999999999999999999999
Q ss_pred HhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHH
Q psy3014 171 IQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKE 250 (570)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (570)
++.+|......+.++++......+.++.......... ...+............. +..............+...
T Consensus 155 ~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~------~~~~~~~~p~~~~~~~~-~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 155 IQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGI------EILASMAEPCKQEHNGF-PIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred hhcCcHhhhcccccHHHHHHHHHHhcCcccccccccc------ccCCCCCCcccccCCCC-CccchhHHHHHHHHhhhHH
Confidence 9999999999999999999999999887652111110 00010000000011111 1111111111244467778
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccC----hhHHHHHHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD----FKLIAKALQRIGN 326 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~~l~~ 326 (570)
..+|...+...++..|++.|..++.++ .+...+.+.+.+|+..|.+.+++.....+++.... ...+..++..+|.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 899999999999999999999999999 99999999999999999999999999998865443 3345677777899
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q psy3014 327 CYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAIN 406 (570)
Q Consensus 327 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 406 (570)
.|...++++.|+.+|.+++..+.++++.......+++....+.....+|.-...-...|..+++.|+|..|+..|.+++.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy3014 407 RNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486 (570)
Q Consensus 407 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 486 (570)
.+|+++.+|.++|.||.++|.+..|+..++.+++++|+...+|.+.|.++..+.+|++|.+.|+++++++|++.++...+
T Consensus 387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~ 466 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGY 466 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc--CCHHHHHHHHcCCchHHHhhcCHHHHHHHHHhhcCHHHHHHhhcCHHHHHHHHHHHhcCchhh
Q psy3014 487 RQCSIAVS--SNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIASKIQKLVNSGLIVL 557 (570)
Q Consensus 487 ~~~~~~~~--~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (570)
.+|...+. .+++...+..+.||++..++.||.+..++.+++.+| ++..++++|.|...+++++.+|++.+
T Consensus 467 ~rc~~a~~~~~~~ee~~~r~~~dpev~~il~d~~m~~~l~q~q~~p-a~~~~~~n~~v~~ki~~l~~~g~~~~ 538 (539)
T KOG0548|consen 467 RRCVEAQRGDETPEETKRRAMADPEVQAILQDPAMRQILEQMQENP-ALQEHLKNPMVMQKIEKLISAGIIQV 538 (539)
T ss_pred HHHHHHhhcCCCHHHHHHhhccCHHHHHHHcCHHHHHHHHHHHhCH-HHHHHHhccHHHHHHHHHHHhhhhcc
Confidence 99999643 378899999999999999999999999999999999 88899999999999999999998865
No 2
>KOG4626|consensus
Probab=100.00 E-value=2.7e-48 Score=354.03 Aligned_cols=392 Identities=19% Similarity=0.239 Sum_probs=365.4
Q ss_pred chhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhH
Q psy3014 2 ENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKG 81 (570)
Q Consensus 2 ~~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 81 (570)
..++..|+-++.|..+|+++...|++++|+..|+.+++++|+..++|.++|.++...|+.+.|..+|..+++++|+...+
T Consensus 107 ~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca 186 (966)
T KOG4626|consen 107 LAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA 186 (966)
T ss_pred hhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh
Confidence 34667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCC
Q psy3014 82 YSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD 161 (570)
Q Consensus 82 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (570)
+..+|.++...|+..+|..+|.++++..|...-+|..|+.++..+++...+..
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq--------------------------- 239 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQ--------------------------- 239 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHH---------------------------
Confidence 99999999999999999999999999999999999988888777333221111
Q ss_pred hHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q psy3014 162 PSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLT 241 (570)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (570)
.+.+++.
T Consensus 240 -------------------------------------------------------------------------~y~eAvk 246 (966)
T KOG4626|consen 240 -------------------------------------------------------------------------HYEEAVK 246 (966)
T ss_pred -------------------------------------------------------------------------HHHHhhc
Confidence 2223344
Q ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHH
Q psy3014 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKAL 321 (570)
Q Consensus 242 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 321 (570)
.+|..+.+|+++|.+|...+.|+.|+.+|.+|+.+.|++..++.++|.+|+.+|..+-||..|+++++..|.+ +.++
T Consensus 247 ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F---~~Ay 323 (966)
T KOG4626|consen 247 LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF---PDAY 323 (966)
T ss_pred CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc---hHHH
Confidence 5567789999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcccCC--------HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC
Q psy3014 322 QRIGNCYKKMEDWKNAKVYFEKSMSEHRT--------PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGK 393 (570)
Q Consensus 322 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (570)
.++|..+...|+..+|..+|.+++...++ +.+....+.++.|...|.++++..|..+.++.++|.+|..+|+
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc
Confidence 99999999999999999999999998887 4467777889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy3014 394 YADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKAL 473 (570)
Q Consensus 394 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 473 (570)
+++|+.+|++++.+.|..++++.++|..|..+|+.+.|+.+|.+++.++|..++++.++|.+|...|+..+|+..|+.++
T Consensus 404 l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 404 LDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhcCC
Q psy3014 474 ELDASNAEAVEGYRQCSIAVSSN 496 (570)
Q Consensus 474 ~~~p~~~~~~~~l~~~~~~~~~~ 496 (570)
+++|+.+++..++..|+.-..+.
T Consensus 484 klkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 484 KLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred ccCCCCchhhhHHHHHHHHHhcc
Confidence 99999999999999999988873
No 3
>KOG4626|consensus
Probab=100.00 E-value=1.6e-46 Score=342.45 Aligned_cols=440 Identities=18% Similarity=0.202 Sum_probs=347.9
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
++.......++...++.|+|.+|.+....+-..+|.+......++.++++..+++.....-..+++.+|...+++-++|.
T Consensus 45 ~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN 124 (966)
T KOG4626|consen 45 HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLAN 124 (966)
T ss_pred CccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHH
Confidence 34455678899999999999999999999998888876666666666666666666666666666666666666666666
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQM 167 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (570)
++...|++++|+..|+.++++.|++.+++..++.++...++...+.+.+...++ .+|......++ .-..
T Consensus 125 ~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---------lnP~l~ca~s~--lgnL 193 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---------LNPDLYCARSD--LGNL 193 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---------cCcchhhhhcc--hhHH
Confidence 666666666666666666666666666666666666665555555554443331 11100000000 0000
Q ss_pred HHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHH
Q psy3014 168 IKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSA 247 (570)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (570)
++.. +++. .+...+.+++...|.-+
T Consensus 194 lka~-------------Grl~------------------------------------------ea~~cYlkAi~~qp~fA 218 (966)
T KOG4626|consen 194 LKAE-------------GRLE------------------------------------------EAKACYLKAIETQPCFA 218 (966)
T ss_pred HHhh-------------cccc------------------------------------------hhHHHHHHHHhhCCcee
Confidence 0000 0000 01122223333344566
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
-+|.++|.++..+|+...|+..|++|++++|+.+++++++|.+|...+.+++|+.+|.+++...|++ +.++.++|.+
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~---A~a~gNla~i 295 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH---AVAHGNLACI 295 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc---hhhccceEEE
Confidence 7788999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHcCCHHHHHHHHHHHhcccCC--------HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHH
Q psy3014 328 YKKMEDWKNAKVYFEKSMSEHRT--------PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVK 399 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 399 (570)
|..+|..+-|+..|+++++..|. +..+...|+..+|...|.+++...|..+++..++|.++..+|.+++|..
T Consensus 296 YyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR 375 (966)
T ss_pred EeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH
Confidence 99999999999999999999887 3456677899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 400 EYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 400 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
.|.++++..|....++.+||.+|.++|++++|+.+|+.++.+.|..++++.++|..|..+|+...|+.+|.+|+.++|..
T Consensus 376 ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~ 455 (966)
T KOG4626|consen 376 LYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF 455 (966)
T ss_pred HHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHH---HHHHcCCchHHHhhcC
Q psy3014 480 AEAVEGYRQCSIAVSSNPEEV---RKRAMGDPEVQQILRD 516 (570)
Q Consensus 480 ~~~~~~l~~~~~~~~~~~e~~---~~~~~~~p~~~~~~~~ 516 (570)
.+++.+|+.++...|+..++. ...+..+|++.+...+
T Consensus 456 AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cN 495 (966)
T KOG4626|consen 456 AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCN 495 (966)
T ss_pred HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhH
Confidence 999999999999999976643 4556677877765443
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=9.9e-37 Score=309.94 Aligned_cols=417 Identities=21% Similarity=0.260 Sum_probs=276.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
.+..+..+|..++..|+|++|+..|++++...|+ +..+.++|.||..+|++++|+..++++++++|++..+++.+|.+|
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4677899999999999999999999999999996 788999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHHhhccCCCcHHHHHHH-HHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHH
Q psy3014 90 SYLGRYKESISTYEEGLKLDPNNEQMKEAI-KDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMI 168 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (570)
..+|++++|+..|..+...++.+......+ ...+.. .. .....
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~a-----------------------------------~~~~~ 248 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKK-FA-----------------------------------ESKAK 248 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH-HH-----------------------------------HHHHH
Confidence 999999999999998887766544322111 111111 00 00000
Q ss_pred HHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCC--------CCCCCCCCCCCCCCCccc
Q psy3014 169 KEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKK--------APSPPPAKKPAEPEDKNL 240 (570)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 240 (570)
..+...+... .....+....+.......................... .........+...+...+
T Consensus 249 ~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al 321 (615)
T TIGR00990 249 EILETKPENL-------PSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKAL 321 (615)
T ss_pred HHHhcCCCCC-------CCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 0000000000 0000000000000000000000000000000000000 000000000000111111
Q ss_pred c---hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHH
Q psy3014 241 T---DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLI 317 (570)
Q Consensus 241 ~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 317 (570)
. ..|..+.++..+|.++...|++++|+..|+++++++|.+...+..+|.++...|++++|+..++++++.+|++
T Consensus 322 ~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--- 398 (615)
T TIGR00990 322 DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED--- 398 (615)
T ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---
Confidence 1 1244555555566666666666666666666666666666666666666666666666666666666665555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
+.+++.+|.++...|++++|+.+|++++. .+|++...+..+|.++...|++++|
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~--------------------------l~P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSID--------------------------LDPDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------cCccCHHHHHHHHHHHHHCCCHHHH
Confidence 55556666666666666666666666655 8999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHH------HHHHHHHH-HhCCCHHHHHHHHH
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKG------WIRKGKIL-QGMQQQSKAIDAYE 470 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~------~~~l~~~~-~~~g~~~~A~~~~~ 470 (570)
+..|+++++..|+++.++..+|.++...|++++|+..|++++.+.|+.... +...+.++ ...|++++|+..++
T Consensus 453 ~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~ 532 (615)
T TIGR00990 453 MATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCE 532 (615)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999875332 23333334 44799999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhcCCHHH
Q psy3014 471 KALELDASNAEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 471 ~al~~~p~~~~~~~~l~~~~~~~~~~~e~ 499 (570)
++++++|++..++..++.++..+|+..++
T Consensus 533 kAl~l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 533 KALIIDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 99999999999999999999999996654
No 5
>KOG0547|consensus
Probab=100.00 E-value=5.7e-35 Score=260.12 Aligned_cols=425 Identities=21% Similarity=0.290 Sum_probs=319.4
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
-..+..+..+|+.++++|+|++||++|++||.+.|+.+..|.+++.||...|+|++.++.+.++++++|+.+.++++++.
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS 191 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHHhhccC-CCcHHHHHHHHHHHHHhhh------cc-CCCccccccCCCchHHHHhhhCCCCC---
Q psy3014 88 ALSYLGRYKESISTYEEGLKLD-PNNEQMKEAIKDVRNQEMN------DM-NRGDPFANLFSDPNIFVQLQLDPRTK--- 156 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--- 156 (570)
++..+|++++|+....-..-.. =++......+-+++..++. .. +....+........++.....++...
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 9999999999998765332111 1122222222222222110 00 11111111111111222222222221
Q ss_pred -CCCCChHHHHHHHHHhhCc-hhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 157 -PFLSDPSYVQMIKEIQKDP-SLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAE 234 (570)
Q Consensus 157 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (570)
...++......+..+.... +.+.. ............... ....
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~---------a~~~~te~~~~~~~~--------------------------~~~n 316 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLK---------AYDKATEECLGSESS--------------------------LSVN 316 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHH---------HHHHHHHHhhhhhhh--------------------------cccc
Confidence 1223334444444432221 11110 000000000000000 0000
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh
Q psy3014 235 PEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF 314 (570)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 314 (570)
..+ ..-..-+.++...|..++-.|++..|...|+++|+++|.+...+..+|.+|...++.++-...|.++..++|.+
T Consensus 317 ~~d---~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n 393 (606)
T KOG0547|consen 317 EID---AELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN 393 (606)
T ss_pred ccc---hhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC
Confidence 000 01135688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCH
Q psy3014 315 KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394 (570)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (570)
+.+|+..|.+++-++++++|+..|++++. ++|++.-.+..++.+.++++++
T Consensus 394 ---~dvYyHRgQm~flL~q~e~A~aDF~Kai~--------------------------L~pe~~~~~iQl~~a~Yr~~k~ 444 (606)
T KOG0547|consen 394 ---PDVYYHRGQMRFLLQQYEEAIADFQKAIS--------------------------LDPENAYAYIQLCCALYRQHKI 444 (606)
T ss_pred ---CchhHhHHHHHHHHHHHHHHHHHHHHHhh--------------------------cChhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHH-hCCCHHHHHH
Q psy3014 395 ADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK------FLKGWIRKGKILQ-GMQQQSKAID 467 (570)
Q Consensus 395 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~-~~g~~~~A~~ 467 (570)
++++..|+.+.+..|+.++++...|.++..++++++|++.|++++.+.|. ++..+...|.+.. -.+++..|+.
T Consensus 445 ~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~ 524 (606)
T KOG0547|consen 445 AESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAEN 524 (606)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 6666666665543 3488999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHH
Q psy3014 468 AYEKALELDASNAEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 468 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~ 499 (570)
.+++|+++||....++..++++..++|+..++
T Consensus 525 Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 525 LLRKAIELDPKCEQAYETLAQFELQRGKIDEA 556 (606)
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999986553
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.3e-34 Score=313.89 Aligned_cols=424 Identities=17% Similarity=0.182 Sum_probs=353.6
Q ss_pred hhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHH
Q psy3014 6 SLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRK 85 (570)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (570)
..|.++..+..+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..+++++..+|++..++..+
T Consensus 460 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHH
Q psy3014 86 GSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYV 165 (570)
Q Consensus 86 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (570)
+.++...|++++|+..+++++..+|.+...+..++.++...++...+...+...... .+. .....
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~------~~~~~ 604 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA---------APD------SPEAW 604 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc---------CCC------CHHHH
Confidence 999999999999999999999999999999999999988877666666555544311 000 00111
Q ss_pred HHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHH
Q psy3014 166 QMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQR 245 (570)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (570)
..+...-..... -......+.... ...|.
T Consensus 605 ~~l~~~~~~~~~------~~~A~~~~~~~~---------------------------------------------~~~~~ 633 (899)
T TIGR02917 605 LMLGRAQLAAGD------LNKAVSSFKKLL---------------------------------------------ALQPD 633 (899)
T ss_pred HHHHHHHHHcCC------HHHHHHHHHHHH---------------------------------------------HhCCC
Confidence 000000000000 000111111111 11224
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIG 325 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~ 325 (570)
.+..+..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..++.+....|.+ ...+..+|
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~ 710 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA---ALGFELEG 710 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC---hHHHHHHH
Confidence 566788899999999999999999999999999999999999999999999999999999999888888 78888899
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCCHH-------HHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHH
Q psy3014 326 NCYKKMEDWKNAKVYFEKSMSEHRTPE-------IRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAV 398 (570)
Q Consensus 326 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 398 (570)
.++...|++++|+..|++++...++.. .+...|++++|...+++.+...|.++.++..+|.++...|++++|+
T Consensus 711 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 790 (899)
T TIGR02917 711 DLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAI 790 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999999998877643 3445577889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 399 KEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 399 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
..|+++++..|+++.++..+|.++...|+ .+|+..+++++...|+++..+..+|.++...|++++|+.+|+++++.+|.
T Consensus 791 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 791 KHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCHHH
Q psy3014 479 NAEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 479 ~~~~~~~l~~~~~~~~~~~e~ 499 (570)
++.++..++.++...|+..++
T Consensus 870 ~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 870 AAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999986654
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.2e-34 Score=313.28 Aligned_cols=418 Identities=10% Similarity=0.094 Sum_probs=315.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChh--------------H
Q psy3014 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPK--------------G 81 (570)
Q Consensus 16 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~ 81 (570)
.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45777777788888888888888888877777888888888888888888888888877776542 1
Q ss_pred HhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCC
Q psy3014 82 YSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD 161 (570)
Q Consensus 82 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (570)
...+|.++...|++++|+..|+++++.+|++..++..++.++...++...+...+.+++.. +|...
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~---------~p~~~----- 419 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM---------DPGNT----- 419 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCH-----
Confidence 2345777777788888888888888888877777777777777766666665555544321 11000
Q ss_pred hHHHHHHHHH-hhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q psy3014 162 PSYVQMIKEI-QKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNL 240 (570)
Q Consensus 162 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (570)
..+......+ ...++....++. .+...... .. ..
T Consensus 420 ~a~~~L~~l~~~~~~~~A~~~l~---------~l~~~~~~-------------------------------~~-----~~ 454 (1157)
T PRK11447 420 NAVRGLANLYRQQSPEKALAFIA---------SLSASQRR-------------------------------SI-----DD 454 (1157)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHH---------hCCHHHHH-------------------------------HH-----HH
Confidence 0000000000 000000000000 00000000 00 00
Q ss_pred chhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHH
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKA 320 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 320 (570)
.........+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++..|++ +..
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~---~~~ 531 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND---PEQ 531 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHH
Confidence 00011234567789999999999999999999999999999999999999999999999999999999999999 888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccCCH------------------HHHHHHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy3014 321 LQRIGNCYKKMEDWKNAKVYFEKSMSEHRTP------------------EIRTLISEMEKKIKEEEKKAYIDPVKAEEAK 382 (570)
Q Consensus 321 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 382 (570)
++.++..+...+++++|+..++++.....+. ..+...++.++|+..++ ..|.++..+.
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~ 607 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDL 607 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHH
Confidence 9999999999999999999998875433221 12334456677777665 5788999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCH
Q psy3014 383 ERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQ 462 (570)
Q Consensus 383 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 462 (570)
.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|+++..+..+|.++...|++
T Consensus 608 ~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 608 TLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDT 687 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcH------HHHHHHHHHHHHhcCCHHH
Q psy3014 463 SKAIDAYEKALELDASNA------EAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 463 ~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~e~ 499 (570)
++|+..|++++...|+++ .++..++.++...|+..++
T Consensus 688 ~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 688 AAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred HHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999877654 4667789999999985543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.5e-34 Score=310.50 Aligned_cols=420 Identities=17% Similarity=0.167 Sum_probs=303.9
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
|........++..+...|++++|+..+++.+...|.++..+..+|.++...|++++|+..|+++++.+|++..+++.+|.
T Consensus 428 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 507 (899)
T TIGR02917 428 PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLAR 507 (899)
T ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 45566778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQM 167 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (570)
++...|++++|+..|++++..+|++..++..++.++...++...+...+.+.... .|... ......
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~-----~~~~~l 573 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL---------NPQEI-----EPALAL 573 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------Cccch-----hHHHHH
Confidence 9999999999999999999999999999999999998866666665555443310 00000 000000
Q ss_pred HHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHH
Q psy3014 168 IKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSA 247 (570)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (570)
... +............+.. .....|..+
T Consensus 574 ~~~----------~~~~~~~~~A~~~~~~------------------------------------------~~~~~~~~~ 601 (899)
T TIGR02917 574 AQY----------YLGKGQLKKALAILNE------------------------------------------AADAAPDSP 601 (899)
T ss_pred HHH----------HHHCCCHHHHHHHHHH------------------------------------------HHHcCCCCH
Confidence 000 0000001010000000 000112345
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|++ ..++..++.+
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~ 678 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN---TEAQIGLAQL 678 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHH
Confidence 5677777777777777777777777777777777777777777777777777777777777777777 6677777777
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCH--------HHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHH
Q psy3014 328 YKKMEDWKNAKVYFEKSMSEHRTP--------EIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVK 399 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 399 (570)
+...|++++|+..++.+....+.. .++...+++++|+..+++++...|.. ..+..++.++...|++++|+.
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHH
Confidence 777777777777777776655542 23344566777777777777766665 556667777777777777777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 400 EYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 400 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
.++++++..|+++.+++.+|.++...|++++|+..|+++++..|+++.++..+|.++...|+ .+|+.++++++++.|++
T Consensus 758 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~ 836 (899)
T TIGR02917 758 TLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNI 836 (899)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777 66777777777777777
Q ss_pred HHHHHHHHHHHHHhcCCHH
Q psy3014 480 AEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 480 ~~~~~~l~~~~~~~~~~~e 498 (570)
+.++..++.++...|+..+
T Consensus 837 ~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 837 PAILDTLGWLLVEKGEADR 855 (899)
T ss_pred cHHHHHHHHHHHHcCCHHH
Confidence 7777777777777776443
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=5.6e-33 Score=282.50 Aligned_cols=344 Identities=16% Similarity=0.215 Sum_probs=285.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCC-------------
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP------------- 76 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------------- 76 (570)
++..+..+|.+++..|+|++|+..|+++++++|++..+++.+|.+|..+|++++|+..|..+...++
T Consensus 159 ~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (615)
T TIGR00990 159 DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERL 238 (615)
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999988766543332
Q ss_pred -----------------CChhHHhHHHHH---------------------------------H---hhccCHHHHHHHHH
Q psy3014 77 -----------------DWPKGYSRKGSA---------------------------------L---SYLGRYKESISTYE 103 (570)
Q Consensus 77 -----------------~~~~~~~~la~~---------------------------------~---~~~g~~~~A~~~~~ 103 (570)
.+...+..+|.. + ...+++++|+..|+
T Consensus 239 l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~ 318 (615)
T TIGR00990 239 LKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFE 318 (615)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 211111111111 1 11257888999999
Q ss_pred HhhccC---CCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHh
Q psy3014 104 EGLKLD---PNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTT 180 (570)
Q Consensus 104 ~al~~~---p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (570)
+++... |....++..++.++...++...+...+.+
T Consensus 319 ~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k------------------------------------------ 356 (615)
T TIGR00990 319 KALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK------------------------------------------ 356 (615)
T ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH------------------------------------------
Confidence 988764 66667777777777653322222111111
Q ss_pred hccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHc
Q psy3014 181 KLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKK 260 (570)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 260 (570)
.+...|..+..+..+|.++...
T Consensus 357 ----------------------------------------------------------al~l~P~~~~~~~~la~~~~~~ 378 (615)
T TIGR00990 357 ----------------------------------------------------------SIELDPRVTQSYIKRASMNLEL 378 (615)
T ss_pred ----------------------------------------------------------HHHcCCCcHHHHHHHHHHHHHC
Confidence 1112335678899999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy3014 261 KNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVY 340 (570)
Q Consensus 261 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 340 (570)
|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..
T Consensus 379 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~---~~~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF---IFSHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC---HHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 88999999999999999999999
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH------
Q psy3014 341 FEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKY------ 414 (570)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~------ 414 (570)
|++++. ..|.++.++..+|.++...|++++|+..|++++.+.|.+...
T Consensus 456 ~~~al~--------------------------~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 456 FRRCKK--------------------------NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred HHHHHH--------------------------hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 999998 889999999999999999999999999999999999875332
Q ss_pred HHHHHHHH-HHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Q psy3014 415 YSNRAACY-TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482 (570)
Q Consensus 415 ~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 482 (570)
+...+..+ ...|++++|+..+++++.++|++..++..+|.++..+|++++|+.+|++++++.+...+.
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 23333334 447999999999999999999999999999999999999999999999999999876553
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.4e-32 Score=297.23 Aligned_cols=456 Identities=14% Similarity=0.105 Sum_probs=294.2
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchh----------------hchhHHHhcccCHHHHHHHHhc
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILF----------------SNRSAAFAKEGNYEKALEDAEK 70 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----------------~~la~~~~~~g~~~~A~~~~~~ 70 (570)
.|.+++.+..++.++...|++++|...++++++.+|+++.++ ..+|.++...|++++|+..|++
T Consensus 58 ~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~ 137 (1157)
T PRK11447 58 DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDK 137 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345566666666666666666666666666666666665442 3445556666666666666666
Q ss_pred hhccCCCChhH-HhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHH---
Q psy3014 71 TISLKPDWPKG-YSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF--- 146 (570)
Q Consensus 71 al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 146 (570)
++..+|.+... ...+..+....|++++|+..|+++++.+|++..++..++.++...++..++...+.++...+...
T Consensus 138 ~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~a 217 (1157)
T PRK11447 138 LFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAA 217 (1157)
T ss_pred HccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHH
Confidence 66666555321 11222223334666666666666666666666666666666655444444444443332211000
Q ss_pred -----HHhhhCCCCCCCCCChHHHHHHHH-HhhCchhH-----Hh-------hccCccHHHHHHHHhcCcccCCCCCCCC
Q psy3014 147 -----VQLQLDPRTKPFLSDPSYVQMIKE-IQKDPSLM-----TT-------KLKDPRMMTTLSVLLGVNMSSTMGDGDA 208 (570)
Q Consensus 147 -----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (570)
..+... .........+.. +...+... .. ...++...... .+....
T Consensus 218 a~~~~~~l~~~------~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~---~G~~~~-------- 280 (1157)
T PRK11447 218 AQLWYGQIKDM------PVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA---QGLAAV-------- 280 (1157)
T ss_pred HHHHHHHHhcc------CCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHH---HHHHHH--------
Confidence 000000 000000000000 00000000 00 00011110000 000000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH------
Q psy3014 209 EEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDIT------ 282 (570)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------ 282 (570)
.......+...+...+...|.++.++..+|.++...|++++|+.+|+++++.+|++..
T Consensus 281 ----------------~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 281 ----------------DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred ----------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 0000001222333444556778899999999999999999999999999999997642
Q ss_pred --------HHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHH-H
Q psy3014 283 --------FQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE-I 353 (570)
Q Consensus 283 --------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~ 353 (570)
....+|.++...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..|++++...|... .
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~---~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a 421 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD---SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA 421 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 12345788889999999999999999999998 88999999999999999999999999998776621 0
Q ss_pred -------------------------------------------------HHHHHHHHHHHHHHHHHhcCChhhHHHHHHH
Q psy3014 354 -------------------------------------------------RTLISEMEKKIKEEEKKAYIDPVKAEEAKER 384 (570)
Q Consensus 354 -------------------------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 384 (570)
+...+++++|+..+++++..+|+++.+++.+
T Consensus 422 ~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~L 501 (1157)
T PRK11447 422 VRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRL 501 (1157)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 1123567888888999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHH--------------------------
Q psy3014 385 GNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETC-------------------------- 438 (570)
Q Consensus 385 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-------------------------- 438 (570)
|.++...|++++|+..++++++..|+++..++.++..+...|++++|+..++++
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 999999999999999999999888888887777776666666666666555432
Q ss_pred --------------HhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHH
Q psy3014 439 --------------LKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 439 --------------l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e 498 (570)
+...|.++..++.+|.++...|++++|+..|+++++.+|+++.++..++.++...|+..+
T Consensus 582 ~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 223567777778888888888888888888888888888888888888888888888554
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1e-32 Score=279.01 Aligned_cols=347 Identities=11% Similarity=0.029 Sum_probs=290.6
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHh
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (570)
.+........+...+..+.+.|++++|+..++.++...|.++.+++.+|.+....|++++|+..+++++..+|+++.++.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~ 114 (656)
T PRK15174 35 VRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVL 114 (656)
T ss_pred hhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 33444455667788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChH
Q psy3014 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS 163 (570)
Q Consensus 84 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (570)
.+|.++...|++++|+..|++++.++|++..++..++.++...++...+...+..+.
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~----------------------- 171 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQA----------------------- 171 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH-----------------------
Confidence 999999999999999999999999999999999888888766322221111111000
Q ss_pred HHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchh
Q psy3014 164 YVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDE 243 (570)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (570)
...
T Consensus 172 -----------------------------------------------------------------------------~~~ 174 (656)
T PRK15174 172 -----------------------------------------------------------------------------QEV 174 (656)
T ss_pred -----------------------------------------------------------------------------HhC
Confidence 001
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT-DITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
|..+..+...+ .+...|++++|+..+++++..+|. +......++.++...|++++|+..+++++...|++ ..++.
T Consensus 175 P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~---~~~~~ 250 (656)
T PRK15174 175 PPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG---AALRR 250 (656)
T ss_pred CCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHH
Confidence 12223333333 467788888888888888888753 34444566778888888888888888888888888 88888
Q ss_pred HHHHHHHHcCCHHH----HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHH
Q psy3014 323 RIGNCYKKMEDWKN----AKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAV 398 (570)
Q Consensus 323 ~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 398 (570)
.+|.++...|++++ |+..|++++. .+|+++.++..+|.++...|++++|+
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--------------------------l~P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQ--------------------------FNSDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHh--------------------------hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888885 6777777777 89999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 399 KEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 399 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
..+++++..+|+++.++..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|+..|+++++.+|+
T Consensus 305 ~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 305 PLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 99999999999999999999999999999999999999999999998877777899999999999999999999999988
Q ss_pred cH
Q psy3014 479 NA 480 (570)
Q Consensus 479 ~~ 480 (570)
+.
T Consensus 385 ~~ 386 (656)
T PRK15174 385 HL 386 (656)
T ss_pred hc
Confidence 65
No 12
>KOG0624|consensus
Probab=100.00 E-value=2.5e-32 Score=232.70 Aligned_cols=402 Identities=18% Similarity=0.271 Sum_probs=331.9
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
.|.+++..+.+|..++..|++..|+..|..|++.+|++..+++.+|.+|+.+|+-.-|+..+.+++++.|+...+...+|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ 166 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (570)
.+++++|.+++|...|..++..+|++.........+...
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~----------------------------------------- 152 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI----------------------------------------- 152 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH-----------------------------------------
Confidence 999999999999999999999999765443322221111
Q ss_pred HHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHH
Q psy3014 167 MIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRS 246 (570)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (570)
..
T Consensus 153 ------------------------------------------------------------------------------~e 154 (504)
T KOG0624|consen 153 ------------------------------------------------------------------------------QE 154 (504)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 12
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGN 326 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (570)
-..+......++..|+...|+......+++.|.+...+..++.||...|+...||..++.+-++..++ .+.++.++.
T Consensus 155 ~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn---Te~~ykis~ 231 (504)
T KOG0624|consen 155 HWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN---TEGHYKISQ 231 (504)
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc---hHHHHHHHH
Confidence 22333455566778999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCHHH----HHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 327 CYKKMEDWKNAKVYFEKSMSEHRTPEI----RTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 327 ~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
+++..|+.+.++...+.+++..|+... +..+....+.++. +......++|.++++..+
T Consensus 232 L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les------------------~e~~ie~~~~t~cle~ge 293 (504)
T KOG0624|consen 232 LLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES------------------AEQAIEEKHWTECLEAGE 293 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH------------------HHHHHhhhhHHHHHHHHH
Confidence 999999999999999999997776432 1222222222221 333466789999999999
Q ss_pred HHHhcCCCCHH----HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 403 EAINRNPDDPK----YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 403 ~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
+.++.+|..+. ....+..|+..-|++.+|+..+.+++..+|++..++...+..|.....|+.|+..|++|.+.+|+
T Consensus 294 ~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 294 KVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 99999998544 45567889999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHcCCc------hHH------------HhhcCHHHHHHHHHhhcCHHHHHHhhcCH
Q psy3014 479 NAEAVEGYRQCSIAVSSNPEEVRKRAMGDP------EVQ------------QILRDPAMRLILEQMQNDPRALSDHLKNP 540 (570)
Q Consensus 479 ~~~~~~~l~~~~~~~~~~~e~~~~~~~~~p------~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (570)
|..+..++-++..........-+..+.... ++. ..+.|..-+...+.-..|..++...++||
T Consensus 374 n~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~ 453 (504)
T KOG0624|consen 374 NTRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDP 453 (504)
T ss_pred cHHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCH
Confidence 999999998887666553332332222211 111 12344444555555566888899999999
Q ss_pred HHHHHHHH
Q psy3014 541 EIASKIQK 548 (570)
Q Consensus 541 ~~~~~~~~ 548 (570)
+.|..+++
T Consensus 454 EkRrqFDn 461 (504)
T KOG0624|consen 454 EKRRQFDN 461 (504)
T ss_pred HHHhhccC
Confidence 99888875
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1.7e-32 Score=277.49 Aligned_cols=335 Identities=10% Similarity=0.061 Sum_probs=287.7
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHh
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (570)
+...|..++.++.+|......|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+++.++.
T Consensus 69 l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~ 148 (656)
T PRK15174 69 VLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFA 148 (656)
T ss_pred HHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChH
Q psy3014 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS 163 (570)
Q Consensus 84 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (570)
.+|.++...|++++|+..+++++...|++..++..+.. +...++..
T Consensus 149 ~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~--------------------------------- 194 (656)
T PRK15174 149 LHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSRLP--------------------------------- 194 (656)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHH---------------------------------
Confidence 99999999999999999999999999999887765533 22211111
Q ss_pred HHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchh
Q psy3014 164 YVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDE 243 (570)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (570)
.++..+ ..++... +
T Consensus 195 --eA~~~~--------------------~~~l~~~---------------------------------~----------- 208 (656)
T PRK15174 195 --EDHDLA--------------------RALLPFF---------------------------------A----------- 208 (656)
T ss_pred --HHHHHH--------------------HHHHhcC---------------------------------C-----------
Confidence 111110 0000000 0
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH----HHHHHHHHhhcccChhHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQ----CIEQYIQKIENRADFKLIAK 319 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~~~~l~~~~~~~~~~~ 319 (570)
+........++.++...|++++|+..|++++..+|+++.++..+|.++...|++++ |+..|+++++.+|++ ..
T Consensus 209 ~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~---~~ 285 (656)
T PRK15174 209 LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN---VR 285 (656)
T ss_pred CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC---HH
Confidence 01112334568889999999999999999999999999999999999999999986 899999999999999 99
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHH
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVK 399 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 399 (570)
++..+|.++...|++++|+..+++++. .+|+++.++..+|.++...|++++|+.
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~--------------------------l~P~~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLA--------------------------THPDLPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999999999 889999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 400 EYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 400 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
.|++++..+|+++..+..+|.++...|++++|+..|+++++.+|++. ...+++|+..|.++++.-+..
T Consensus 340 ~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 340 EFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcCCc
Confidence 99999999999988888889999999999999999999999999875 244456666666666655443
No 14
>KOG2002|consensus
Probab=100.00 E-value=2.7e-30 Score=249.07 Aligned_cols=432 Identities=16% Similarity=0.165 Sum_probs=321.1
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN-HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
+..++.+|.+|..+..+|+|++|..+|.++++.+|++ .-+++++|..|+..|+++.|..+|+++++..|++.+....+|
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 4567788899999999999999999999999988887 777888999999999999999999999999999999988899
Q ss_pred HHHhhcc----CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCCh
Q psy3014 87 SALSYLG----RYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP 162 (570)
Q Consensus 87 ~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (570)
.+|...+ ..+.|.....++++..|.+.++|..++.++.. .+.....+.+..+.. .+. ... .. ..+
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d---~L~---~~~---~~-ip~ 452 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALD---ILE---SKG---KQ-IPP 452 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHH---HHH---HcC---CC-CCH
Confidence 8888876 56788888888888889999999888888877 222111221111110 000 000 00 001
Q ss_pred HHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccch
Q psy3014 163 SYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTD 242 (570)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (570)
.+.+.+..+.-.... -+.....+....+..... . ....
T Consensus 453 E~LNNvaslhf~~g~------~~~A~~~f~~A~~~~~~~-------------------------------~-----n~de 490 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGN------IEKALEHFKSALGKLLEV-------------------------------A-----NKDE 490 (1018)
T ss_pred HHHHhHHHHHHHhcC------hHHHHHHHHHHhhhhhhh-------------------------------c-----Cccc
Confidence 111111111000000 000011111111110000 0 0000
Q ss_pred -hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHH
Q psy3014 243 -EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKAL 321 (570)
Q Consensus 243 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 321 (570)
........+++|.++...++++.|.+.|...++.+|...+++..+|......+...+|...+..++..+..+ +.++
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n---p~ar 567 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN---PNAR 567 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC---cHHH
Confidence 112244577888888888888888888888888888888888888877777778888888888888888777 7888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcccCCH-H---------------------HHHHHHHHHHHHHHHHHHhcCChhhHH
Q psy3014 322 QRIGNCYKKMEDWKNAKVYFEKSMSEHRTP-E---------------------IRTLISEMEKKIKEEEKKAYIDPVKAE 379 (570)
Q Consensus 322 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~---------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~ 379 (570)
..+|.++....++..|..-|+.+++..... + -....+..++|+..|.+++..+|.+..
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~y 647 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMY 647 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 888888888888887777666665532221 1 122345689999999999999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Q psy3014 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD--PKFLKGWIRKGKILQ 457 (570)
Q Consensus 380 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 457 (570)
+-..+|.++...|++.+|...|.++.+...+.+.+|.++|.||..+|+|..|++.|+.+++.. .+++..+..||.+++
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y 727 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWY 727 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 999999999999999999999999998877889999999999999999999999999999863 457889999999999
Q ss_pred hCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 458 GMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 458 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
..|.+.+|.++..+|+.+.|.++.+..+++.++.++..
T Consensus 728 ~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 728 EAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAE 765 (1018)
T ss_pred HhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999886
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=1.2e-29 Score=262.47 Aligned_cols=415 Identities=10% Similarity=0.063 Sum_probs=306.5
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
.+..+..+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|+++. +..+|
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ 166 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (570)
.++...|++++|+..++++++..|++..++..++.++...+....+...+......|.....+..++ . ..
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~---------~-~~ 193 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADA---------A-AE 193 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHH---------H-HH
Confidence 9999999999999999999999999999999888887663322223323332222111000000000 0 00
Q ss_pred HHHHHhhCchh--HHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhH
Q psy3014 167 MIKEIQKDPSL--MTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQ 244 (570)
Q Consensus 167 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (570)
.+. +...+.. .............+..++..... .-...+
T Consensus 194 ~~r-~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~--------------------------------------~p~~~~ 234 (765)
T PRK10049 194 LVR-LSFMPTRSEKERYAIADRALAQYDALEALWHD--------------------------------------NPDATA 234 (765)
T ss_pred HHH-hhcccccChhHHHHHHHHHHHHHHHHHhhccc--------------------------------------CCccch
Confidence 000 0000000 00000000011111111111000 000011
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChh-HHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDI-TFQNNIAAVYFERKEYDQCIEQYIQKIENRADFK-LIAKALQ 322 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~ 322 (570)
....+.......+...|++++|+..|+++++..|..+ .+...+|.++...|++++|+..|++++...|... .......
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~ 314 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA 314 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence 2233333323344677999999999999999865432 3444469999999999999999999998877641 1135667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHCCCHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV--KAEEAKERGNELFKNGKYADAVKE 400 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~ 400 (570)
.++.++...|++++|+..++++....|...... ......|+ ...++..+|.++...|++++|+..
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~-------------~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLY-------------GSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeec-------------CCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 788888999999999999999998544210000 00002333 346778899999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 401 YTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 401 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
+++++...|+++.++..+|.++...|++++|+..+++++.++|++..+++.+|.++...|++++|...++++++..|+++
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy3014 481 EAVE 484 (570)
Q Consensus 481 ~~~~ 484 (570)
.+..
T Consensus 462 ~~~~ 465 (765)
T PRK10049 462 GVQR 465 (765)
T ss_pred HHHH
Confidence 7753
No 16
>KOG2002|consensus
Probab=100.00 E-value=1.2e-29 Score=244.58 Aligned_cols=392 Identities=15% Similarity=0.178 Sum_probs=323.2
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHH
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN-HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGY 82 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 82 (570)
+.+.|.++..++.+|.+.+..|+|..|+.+|++++.++|.. +....++|.|+.++|+.+.|+..|+++++++|.++.++
T Consensus 157 l~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~al 236 (1018)
T KOG2002|consen 157 LKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSAL 236 (1018)
T ss_pred HhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHH
Confidence 56678889999999999999999999999999999999874 67788999999999999999999999999999999999
Q ss_pred hHHHHHHhhccC---HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCC
Q psy3014 83 SRKGSALSYLGR---YKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL 159 (570)
Q Consensus 83 ~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (570)
..||.+-....+ +..++..+.++...+|.|+.+...|+..+...+++..+..
T Consensus 237 v~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~------------------------- 291 (1018)
T KOG2002|consen 237 VALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWH------------------------- 291 (1018)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHH-------------------------
Confidence 999988776554 6688999999999999999999888887766222211111
Q ss_pred CChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q psy3014 160 SDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKN 239 (570)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (570)
. .......
T Consensus 292 ----------l--------------------a~~ai~~------------------------------------------ 299 (1018)
T KOG2002|consen 292 ----------L--------------------AEHAIKN------------------------------------------ 299 (1018)
T ss_pred ----------H--------------------HHHHHHh------------------------------------------
Confidence 0 0000000
Q ss_pred cchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHH
Q psy3014 240 LTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD-ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIA 318 (570)
Q Consensus 240 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 318 (570)
....+..++.++.+|..+..+|+|++|..+|.++++.+|++ .-.++.+|..++..|+++.|+.+|+++++..|++ .
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~---~ 376 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN---Y 376 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch---H
Confidence 01122567889999999999999999999999999999999 7788999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHcC----CHHHHHHHHHHHhcccCCH-HHH------HHHHHHHHHHHHHHHHhc-----CChhhHHHHH
Q psy3014 319 KALQRIGNCYKKME----DWKNAKVYFEKSMSEHRTP-EIR------TLISEMEKKIKEEEKKAY-----IDPVKAEEAK 382 (570)
Q Consensus 319 ~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~-~~~------~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 382 (570)
.+...+|.+|...+ ..+.|..+..+++...+.. +.. ...++...++..|..++. ..+-.++.+.
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999998886 6788999999998876542 111 111222233444444432 3345688999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc-----CCC-----CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 383 ERGNELFKNGKYADAVKEYTEAINR-----NPD-----DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 383 ~~~~~~~~~~~~~~A~~~~~~al~~-----~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
++|..++..|++.+|...|..++.. +++ +...-+++|.++...++++.|.+.|..++..+|.+.+++..+
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl 536 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRL 536 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHh
Confidence 9999999999999999999999876 222 233589999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
|......++..+|..+++.++..+..|+.+|..+|.++.....
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhh
Confidence 9888899999999999999999999999999999988777666
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1.3e-29 Score=261.57 Aligned_cols=266 Identities=12% Similarity=0.031 Sum_probs=233.2
Q ss_pred ccchhHH--HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhH
Q psy3014 239 NLTDEQR--SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKL 316 (570)
Q Consensus 239 ~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 316 (570)
.+...|. .+.+++.+|.++.. +++.+|+..+.+++...|++. ....+|.++...|++++|+..+++++...|..
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-- 542 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-- 542 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc--
Confidence 3344456 88999999999987 899999999999999999865 46677888889999999999999988776654
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHH-----HHHHH---HHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q psy3014 317 IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE-----IRTLI---SEMEKKIKEEEKKAYIDPVKAEEAKERGNEL 388 (570)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (570)
..+..+|.++...|++++|+.++++++...|... +.... |++++|+..+++++..+|+ +..+..+|.++
T Consensus 543 --~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l 619 (987)
T PRK09782 543 --EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIY 619 (987)
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 4578889999999999999999999999876532 22334 8999999999999999997 89999999999
Q ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q psy3014 389 FKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDA 468 (570)
Q Consensus 389 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (570)
.+.|++++|+..|++++..+|+++.++.++|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+.+
T Consensus 620 ~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 620 RQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhcCCH---HHHHHHHcCCchHH
Q psy3014 469 YEKALELDASNAEAVEGYRQCSIAVSSNP---EEVRKRAMGDPEVQ 511 (570)
Q Consensus 469 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~---e~~~~~~~~~p~~~ 511 (570)
|+++++++|++..+....+.+.....+.. +........+|...
T Consensus 700 l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 700 ARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 99999999999999999998888887633 23333334445444
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=6.8e-28 Score=249.47 Aligned_cols=389 Identities=15% Similarity=0.079 Sum_probs=298.0
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
+.++........++.-.|++++|+..|.++...+|....++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44556666677788899999999999999999899988899999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQM 167 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (570)
++...|++++|+..++++++.+|++.. +..++.++...++...+...+.+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~----------------------------- 141 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ----------------------------- 141 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH-----------------------------
Confidence 999999999999999999999999998 87777777662222211111111
Q ss_pred HHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHH
Q psy3014 168 IKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSA 247 (570)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (570)
.+...|.++
T Consensus 142 -----------------------------------------------------------------------al~~~P~~~ 150 (765)
T PRK10049 142 -----------------------------------------------------------------------ALPRAPQTQ 150 (765)
T ss_pred -----------------------------------------------------------------------HHHhCCCCH
Confidence 112233456
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHH-----HhcCH---HHHHHHHHHHhhcccCh
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDIT-----FQNNIAAVYF-----ERKEY---DQCIEQYIQKIENRADF 314 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~-----~~~~~---~~A~~~~~~~l~~~~~~ 314 (570)
.++..+|.++...+..++|+..++++.. .|.... ....+..+.. ..+++ ++|+..++.+++..|.+
T Consensus 151 ~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~ 229 (765)
T PRK10049 151 QYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDN 229 (765)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccC
Confidence 6666777777777777777777776655 443211 1111122221 22234 67777777777553332
Q ss_pred h----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC---------HHHHHHHHHHHHHHHHHHHHhcCChhh----
Q psy3014 315 K----LIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT---------PEIRTLISEMEKKIKEEEKKAYIDPVK---- 377 (570)
Q Consensus 315 ~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~~---- 377 (570)
+ ....+.......+...|++++|+..|++++...+. ..++...+++++|+..+++++..+|..
T Consensus 230 p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~ 309 (765)
T PRK10049 230 PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLS 309 (765)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCC
Confidence 1 11223232222345778999999999998887532 245666788999999999988877765
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPD---------------DPKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 442 (570)
......++.++...|++++|+..++++....|. ...++..+|.++...|++++|+..+++++...
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~ 389 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA 389 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 456677788889999999999999999888762 23567889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHH
Q psy3014 443 PKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 443 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e 498 (570)
|.++.++..+|.++...|++++|+..++++++++|++..++..++.+...+++..+
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~ 445 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQ 445 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHH
Confidence 99999999999999999999999999999999999999999999999999998544
No 19
>KOG1126|consensus
Probab=99.97 E-value=3.1e-29 Score=233.11 Aligned_cols=210 Identities=21% Similarity=0.286 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQR 323 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 323 (570)
|..|++|..+|.+|..+++++.|+++|++|++++|....++..+|.=+.....++.|..+|+.++..+|.+ ..+|+.
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh---YnAwYG 494 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH---YNAWYG 494 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh---hHHHHh
Confidence 35677788888888889999999999999999999999999999999999999999999999999999998 899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Q psy3014 324 IGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTE 403 (570)
Q Consensus 324 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 403 (570)
+|.+|.++++++.|.-.|++|+. ++|.+......+|.++.+.|+.++|+..|++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~--------------------------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~ 548 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVE--------------------------INPSNSVILCHIGRIQHQLKRKDKALQLYEK 548 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhc--------------------------CCccchhHHhhhhHHHHHhhhhhHHHHHHHH
Confidence 99999999999999999999998 8899999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Q psy3014 404 AINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482 (570)
Q Consensus 404 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 482 (570)
|+.++|.++...+..|.+++.++++++|+..+++.-++-|+...+++.+|.+|.++|+.+.|+..|.-|+.++|.-..+
T Consensus 549 A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 549 AIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI 627 (638)
T ss_pred HHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999875553
No 20
>KOG1155|consensus
Probab=99.97 E-value=4.3e-27 Score=208.90 Aligned_cols=358 Identities=17% Similarity=0.151 Sum_probs=300.5
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhH-----------------------------HHhcc
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSA-----------------------------AFAKE 58 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-----------------------------~~~~~ 58 (570)
..++-.++..|.++...|....|+..|..++...|-+-.+|..|+. ++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999999988877666654443 44555
Q ss_pred cCHHHHHHHHhchhcc-CCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCcccc
Q psy3014 59 GNYEKALEDAEKTISL-KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFA 137 (570)
Q Consensus 59 g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 137 (570)
.+.++++.-++..+.. .|++...-...|.+.....++++|+..|+...+.+|-..+-......++....+.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~-------- 312 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK-------- 312 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh--------
Confidence 6778888888887777 7888888888899999999999999999999999987655444444433320000
Q ss_pred ccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCC
Q psy3014 138 NLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQP 217 (570)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (570)
.++.........
T Consensus 313 -----------------------------------------------skLs~LA~~v~~--------------------- 324 (559)
T KOG1155|consen 313 -----------------------------------------------SKLSYLAQNVSN--------------------- 324 (559)
T ss_pred -----------------------------------------------HHHHHHHHHHHH---------------------
Confidence 000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH
Q psy3014 218 PSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEY 297 (570)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 297 (570)
.+.-.+++...+|+.|...++.++|+.+|++|++++|....+|..+|.-|..+++.
T Consensus 325 ------------------------idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 325 ------------------------IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred ------------------------hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc
Confidence 01133556667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhh
Q psy3014 298 DQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVK 377 (570)
Q Consensus 298 ~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 377 (570)
..|++.|++|++++|.+ ..+|+.+|..|.-++.+.=|+-+|+++.. ..|.+
T Consensus 381 ~AAi~sYRrAvdi~p~D---yRAWYGLGQaYeim~Mh~YaLyYfqkA~~--------------------------~kPnD 431 (559)
T KOG1155|consen 381 HAAIESYRRAVDINPRD---YRAWYGLGQAYEIMKMHFYALYYFQKALE--------------------------LKPND 431 (559)
T ss_pred HHHHHHHHHHHhcCchh---HHHHhhhhHHHHHhcchHHHHHHHHHHHh--------------------------cCCCc
Confidence 99999999999999999 99999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh-------cCCCCHHHHH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK-------LDPKFLKGWI 450 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~ 450 (570)
+..|..+|.+|.+.++.++|+++|.+++.....+..++..+|.+|.++++.++|..+|++.++ ..|+...+..
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~ 511 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARL 511 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 999999999999999999999999999999988999999999999999999999999999998 4566777888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 451 RKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 451 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
.++.-+.+.+++++|-.+..+++.-++.-.++...+..+...+.
T Consensus 512 fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 512 FLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999988888888877766553
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.97 E-value=3.6e-27 Score=228.70 Aligned_cols=312 Identities=13% Similarity=0.065 Sum_probs=259.9
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCC----h
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW----P 79 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~ 79 (570)
.++........+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. .
T Consensus 28 ~~~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 107 (389)
T PRK11788 28 QQKESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRL 107 (389)
T ss_pred hhhhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHH
Confidence 455666777888889999999999999999999999999999999999999999999999999999988854322 3
Q ss_pred hHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCC
Q psy3014 80 KGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL 159 (570)
Q Consensus 80 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (570)
.++..+|.+|...|++++|+..|+++++.+|.+..+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-------------------------------------------- 143 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGA-------------------------------------------- 143 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHH--------------------------------------------
Confidence 568889999999999999999999999877654433
Q ss_pred CChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q psy3014 160 SDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKN 239 (570)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (570)
T Consensus 144 -------------------------------------------------------------------------------- 143 (389)
T PRK11788 144 -------------------------------------------------------------------------------- 143 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh
Q psy3014 240 LTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDI-----TFQNNIAAVYFERKEYDQCIEQYIQKIENRADF 314 (570)
Q Consensus 240 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 314 (570)
+..++.++...|++++|+..++++++..|.+. ..+..+|.++...|++++|+..++++++..|+.
T Consensus 144 ----------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 213 (389)
T PRK11788 144 ----------LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC 213 (389)
T ss_pred ----------HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence 33467777778999999999999999887753 255678889999999999999999999999888
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHCCC
Q psy3014 315 KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVK-AEEAKERGNELFKNGK 393 (570)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 393 (570)
..++..+|.++...|++++|+..+++++. .+|.. ..++..++.++...|+
T Consensus 214 ---~~~~~~la~~~~~~g~~~~A~~~~~~~~~--------------------------~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 214 ---VRASILLGDLALAQGDYAAAIEALERVEE--------------------------QDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------HChhhHHHHHHHHHHHHHHcCC
Confidence 78899999999999999999999999987 55554 4567788999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--CCCHHHHHHHHHH
Q psy3014 394 YADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG--MQQQSKAIDAYEK 471 (570)
Q Consensus 394 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~ 471 (570)
+++|+..++++++..|+...+ ..+|.++...|++++|+..++++++..|++......++..+.. .|+..+|+..+++
T Consensus 265 ~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 999999999999999876544 8899999999999999999999999999887665445444422 4578888877776
Q ss_pred HH----hhCCCc
Q psy3014 472 AL----ELDASN 479 (570)
Q Consensus 472 al----~~~p~~ 479 (570)
.+ ..+|++
T Consensus 344 ~~~~~~~~~p~~ 355 (389)
T PRK11788 344 LVGEQLKRKPRY 355 (389)
T ss_pred HHHHHHhCCCCE
Confidence 65 445653
No 22
>KOG1126|consensus
Probab=99.96 E-value=4.1e-28 Score=225.71 Aligned_cols=292 Identities=17% Similarity=0.162 Sum_probs=256.8
Q ss_pred hhhchhHHHh--cccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q psy3014 47 LFSNRSAAFA--KEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRN 124 (570)
Q Consensus 47 ~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 124 (570)
.+..+|..|. .+-+..+|+..|.+.-...++..+++..+|..|+.+++|++|..+|+.+-++.|-..+....+..++
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L- 397 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL- 397 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH-
Confidence 4445555554 4556789999999977778888899999999999999999999999999999886543322221111
Q ss_pred HhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCC
Q psy3014 125 QEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMG 204 (570)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (570)
T Consensus 398 -------------------------------------------------------------------------------- 397 (638)
T KOG1126|consen 398 -------------------------------------------------------------------------------- 397 (638)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Q psy3014 205 DGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ 284 (570)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 284 (570)
+...+--+---+-+..+..+|+.|+.|
T Consensus 398 -----------------------------------------------------WHLq~~v~Ls~Laq~Li~~~~~sPesW 424 (638)
T KOG1126|consen 398 -----------------------------------------------------WHLQDEVALSYLAQDLIDTDPNSPESW 424 (638)
T ss_pred -----------------------------------------------------HHHHhhHHHHHHHHHHHhhCCCCcHHH
Confidence 111121122223456778899999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Q psy3014 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKI 364 (570)
Q Consensus 285 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~ 364 (570)
..+|.||.-+++++.|+++|+++++++|.+ +.+|..+|.-+....+++.|..+|++++.
T Consensus 425 ca~GNcfSLQkdh~~Aik~f~RAiQldp~f---aYayTLlGhE~~~~ee~d~a~~~fr~Al~------------------ 483 (638)
T KOG1126|consen 425 CALGNCFSLQKDHDTAIKCFKRAIQLDPRF---AYAYTLLGHESIATEEFDKAMKSFRKALG------------------ 483 (638)
T ss_pred HHhcchhhhhhHHHHHHHHHHHhhccCCcc---chhhhhcCChhhhhHHHHhHHHHHHhhhc------------------
Confidence 999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC
Q psy3014 365 KEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444 (570)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 444 (570)
.+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.++|+.++|+..|++|+.++|.
T Consensus 484 --------~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 484 --------VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred --------CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHHHH
Q psy3014 445 FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEEVR 501 (570)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~~~ 501 (570)
++-..+..|.+++.++++++|+..+++.-++-|++..++..+++++.++|+..-+..
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence 999999999999999999999999999999999999999999999999999765543
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=3.8e-26 Score=221.48 Aligned_cols=290 Identities=14% Similarity=0.118 Sum_probs=256.6
Q ss_pred cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q psy3014 45 HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRN 124 (570)
Q Consensus 45 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 124 (570)
....+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+....
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~---------- 104 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE---------- 104 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH----------
Confidence 4566778999999999999999999999999999999999999999999999999999998874322111
Q ss_pred HhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCC
Q psy3014 125 QEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMG 204 (570)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (570)
T Consensus 105 -------------------------------------------------------------------------------- 104 (389)
T PRK11788 105 -------------------------------------------------------------------------------- 104 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Q psy3014 205 DGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ 284 (570)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 284 (570)
.....+..+|.++...|++++|+..|+++++.+|.+..++
T Consensus 105 ----------------------------------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 144 (389)
T PRK11788 105 ----------------------------------------QRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGAL 144 (389)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHH
Confidence 1234566789999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhcccChhH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q psy3014 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKL--IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362 (570)
Q Consensus 285 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (570)
..++.++...|++++|+..++++++..|.... ....+..+|.++...|++++|+..|+++++
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---------------- 208 (389)
T PRK11788 145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALA---------------- 208 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----------------
Confidence 99999999999999999999999988776522 244567899999999999999999999998
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Q psy3014 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD-PKYYSNRAACYTKLAAFDLGLKDCETCLKL 441 (570)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 441 (570)
..|....++..+|.++...|++++|+..+++++..+|.+ ..++..++.+|...|++++|+..+++++..
T Consensus 209 ----------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 209 ----------ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred ----------HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778888899999999999999999999999999998876 467889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy3014 442 DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSI 491 (570)
Q Consensus 442 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 491 (570)
.|+.... ..+|.++...|++++|+..++++++.+|++..+...+...+.
T Consensus 279 ~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 279 YPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLA 327 (389)
T ss_pred CCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhh
Confidence 9987544 889999999999999999999999999999877766655543
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=8.5e-27 Score=240.87 Aligned_cols=355 Identities=10% Similarity=0.022 Sum_probs=289.7
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchhhchhHHHhcccC-----------------------
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKEGN----------------------- 60 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~----------------------- 60 (570)
.|.+.+.+...+.....+|++++|...|+++....++- ......++.+|...+.
T Consensus 372 ~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 451 (987)
T PRK09782 372 EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQ 451 (987)
T ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHH
Confidence 36788999999999999999999999999999873332 1233367777765544
Q ss_pred --H---HHHHHHHhchhccCCC--ChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCC
Q psy3014 61 --Y---EKALEDAEKTISLKPD--WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRG 133 (570)
Q Consensus 61 --~---~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 133 (570)
. ..+...+.+++..+|. ++.+|+.+|.++.. |++.+|+..|.+++...|++.. ...++.++...++...+.
T Consensus 452 ~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 452 SQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ-HRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH-HHHHHHHHHHCCCHHHHH
Confidence 2 2244555666777788 99999999999987 8999999999999999997543 444444433311111111
Q ss_pred ccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCC
Q psy3014 134 DPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDV 213 (570)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (570)
..+.++. ..
T Consensus 530 ~~~rka~-------------------------------------------------------~~---------------- 538 (987)
T PRK09782 530 AAWQKIS-------------------------------------------------------LH---------------- 538 (987)
T ss_pred HHHHHHh-------------------------------------------------------cc----------------
Confidence 1111000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy3014 214 DPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE 293 (570)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 293 (570)
+.....++.+|.++...|++++|+.+|+++++.+|.+...+..++.....
T Consensus 539 ------------------------------~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 539 ------------------------------DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI 588 (987)
T ss_pred ------------------------------CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 01122356788888999999999999999999998888777777777777
Q ss_pred hcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy3014 294 RKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYI 373 (570)
Q Consensus 294 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 373 (570)
.|++++|+..++++++.+|+ ..++..+|.++.+.|++++|+..|++++. .
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~--------------------------l 638 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPS----ANAYVARATIYRQRHNVPAAVSDLRAALE--------------------------L 638 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------h
Confidence 79999999999999999985 57888999999999999999999999998 8
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKG 453 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 453 (570)
+|+++.++..+|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|++++.++|++..+....|
T Consensus 639 ~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g 718 (987)
T PRK09782 639 EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTP 718 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 454 KILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
.+.....++..|.+.+.++..++|+.. +....+.++...++
T Consensus 719 ~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~ 759 (987)
T PRK09782 719 EQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNN 759 (987)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhccc
Confidence 999999999999999999999999988 87788888777776
No 25
>KOG1173|consensus
Probab=99.96 E-value=9.7e-26 Score=205.52 Aligned_cols=419 Identities=16% Similarity=0.158 Sum_probs=320.1
Q ss_pred hhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhch------hccCCCC
Q psy3014 5 QSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKT------ISLKPDW 78 (570)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~ 78 (570)
.....++...+-+|.+++..|+|..|....+.- .++..+....+..+.|+....+|++|+..+... +..+|.+
T Consensus 43 ~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~ 121 (611)
T KOG1173|consen 43 AGLTNDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKD 121 (611)
T ss_pred HhccCChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchh
Confidence 334467777888999999999999998888775 666677888999999999999999999998833 1112221
Q ss_pred -------------------hhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCcccccc
Q psy3014 79 -------------------PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANL 139 (570)
Q Consensus 79 -------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (570)
....+.+|.+|..+.+.++|...|.+++..++.+.++...+.......... .+
T Consensus 122 ~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~E-----e~--- 193 (611)
T KOG1173|consen 122 AANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQE-----EF--- 193 (611)
T ss_pred hhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhH-----HH---
Confidence 234678899999999999999999999999999988877665544331000 00
Q ss_pred CCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCC
Q psy3014 140 FSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPS 219 (570)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (570)
.++..+... . . ...... .+..+..........
T Consensus 194 ----~ll~~l~~a---~--~-~~ed~e-----------------------~l~~lyel~~~k~~n--------------- 225 (611)
T KOG1173|consen 194 ----ELLESLDLA---M--L-TKEDVE-----------------------RLEILYELKLCKNRN--------------- 225 (611)
T ss_pred ----HHHhcccHH---h--h-hhhHHH-----------------------HHHHHHHhhhhhhcc---------------
Confidence 000000000 0 0 000000 000000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----------------------
Q psy3014 220 PKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD---------------------- 277 (570)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------------------- 277 (570)
+.. .....+..+..-..+.+.....+..++..++|.+..+.++..++.+
T Consensus 226 ------~~~---~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~ 296 (611)
T KOG1173|consen 226 ------EES---LTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNK 296 (611)
T ss_pred ------ccc---cccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccch
Confidence 000 0000001122223567777888888889999999988888887764
Q ss_pred ------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy3014 278 ------------PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345 (570)
Q Consensus 278 ------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 345 (570)
|+.+..|+..|..|...|++.+|.++|.++..++|.+ ..+|...|..+...|+.++|+.+|.+|-
T Consensus 297 Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~f---gpaWl~fghsfa~e~EhdQAmaaY~tAa 373 (611)
T KOG1173|consen 297 LFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTF---GPAWLAFGHSFAGEGEHDQAMAAYFTAA 373 (611)
T ss_pred HHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccc---cHHHHHHhHHhhhcchHHHHHHHHHHHH
Confidence 4555678889999999999999999999999999999 9999999999999999999999999999
Q ss_pred cccCC--------HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----C---
Q psy3014 346 SEHRT--------PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP----D--- 410 (570)
Q Consensus 346 ~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----~--- 410 (570)
+..+. +-.+..++++..|...+..+..+.|.++-++..+|.+.+..+.|.+|..+|+.++..-+ .
T Consensus 374 rl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~ 453 (611)
T KOG1173|consen 374 RLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIF 453 (611)
T ss_pred HhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccc
Confidence 88776 33455678899999999999999999999999999999999999999999999984322 1
Q ss_pred CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy3014 411 DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCS 490 (570)
Q Consensus 411 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 490 (570)
-...+.++|.++.+++.+++|+..+++++.+.|.++.++..+|.+|..+|+++.|+++|.++|.++|+|..+...|+.+.
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 23468999999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred HH
Q psy3014 491 IA 492 (570)
Q Consensus 491 ~~ 492 (570)
..
T Consensus 534 e~ 535 (611)
T KOG1173|consen 534 ED 535 (611)
T ss_pred Hh
Confidence 65
No 26
>KOG0547|consensus
Probab=99.96 E-value=7.3e-26 Score=202.39 Aligned_cols=393 Identities=17% Similarity=0.182 Sum_probs=284.8
Q ss_pred hhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q psy3014 47 LFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 126 (570)
Q Consensus 47 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 126 (570)
.+-+.|.-+++.|+|++|+++|.+||++.|+.+..|-+++-||...|+|++-++...++++++|+...++...+..+...
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Confidence 45578889999999999999999999999999999999999999999999999999999999999999999999998885
Q ss_pred hhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhcc--C---ccHHHHHHHHhcCcccC
Q psy3014 127 MNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLK--D---PRMMTTLSVLLGVNMSS 201 (570)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~ 201 (570)
++..++.....-+.-..++ ......+.....++.... ......+. . -.....+....+.....
T Consensus 197 g~~~eal~D~tv~ci~~~F----------~n~s~~~~~eR~Lkk~a~--~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGF----------QNASIEPMAERVLKKQAM--KKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred ccHHHHHHhhhHHHHhhhc----------ccchhHHHHHHHHHHHHH--HHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 5555443322211100000 000000001111111000 00001111 0 01111122222221110
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHhcC-
Q psy3014 202 TMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYK---KKNFEEALAHYNKAVEFD- 277 (570)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~- 277 (570)
..... .. .. +.+++...-+.-... ...|.+|...+.+.....
T Consensus 265 ~~~~~-----------------~~------~~-----------~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~ 310 (606)
T KOG0547|consen 265 PKPLF-----------------DN------KS-----------DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSE 310 (606)
T ss_pred ccccc-----------------cC------CC-----------ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhh
Confidence 00000 00 00 001111111111122 236788888777765432
Q ss_pred ---CCC---------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy3014 278 ---PTD---------ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345 (570)
Q Consensus 278 ---p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 345 (570)
..+ ..++...|..++-.|++-.|.+.++.+++++|.+ ...|..+|.+|...++.++....|.++.
T Consensus 311 ~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~---~~lyI~~a~~y~d~~~~~~~~~~F~~A~ 387 (606)
T KOG0547|consen 311 SSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF---NSLYIKRAAAYADENQSEKMWKDFNKAE 387 (606)
T ss_pred hhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc---chHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 122 5778889999999999999999999999999998 7779999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy3014 346 SEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425 (570)
Q Consensus 346 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 425 (570)
. ++|.++++|+..|++++-.+++++|+.-|++++.++|++.-.+..++.+.+++
T Consensus 388 ~--------------------------ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 388 D--------------------------LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ 441 (606)
T ss_pred h--------------------------cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhcCCH--
Q psy3014 426 AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS------NAEAVEGYRQCSIAVSSNP-- 497 (570)
Q Consensus 426 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~-- 497 (570)
++++++...|+.+....|+.++++...|.++..+++|++|++.|.+|+++.|. ++..+.+-+.+..+-...-
T Consensus 442 ~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~ 521 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQ 521 (606)
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999 7777666666665543322
Q ss_pred --HHHHHHHcCCchHHHhh
Q psy3014 498 --EEVRKRAMGDPEVQQIL 514 (570)
Q Consensus 498 --e~~~~~~~~~p~~~~~~ 514 (570)
+-+.+.+..||......
T Consensus 522 a~~Ll~KA~e~Dpkce~A~ 540 (606)
T KOG0547|consen 522 AENLLRKAIELDPKCEQAY 540 (606)
T ss_pred HHHHHHHHHccCchHHHHH
Confidence 22234445677665443
No 27
>KOG2076|consensus
Probab=99.95 E-value=6.2e-25 Score=211.02 Aligned_cols=358 Identities=16% Similarity=0.149 Sum_probs=243.0
Q ss_pred hhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHH
Q psy3014 6 SLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRK 85 (570)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (570)
..++.+..++..|+.++..|++++|...+.++|+.+|.++.+|+.||.+|..+|+.++|+...-.|-.++|++.+.|..+
T Consensus 134 ~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 134 KLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred ccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHH
Q psy3014 86 GSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYV 165 (570)
Q Consensus 86 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (570)
+....++|++.+|.-+|.+|++.+|.+....+
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~------------------------------------------------ 245 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIY------------------------------------------------ 245 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHH------------------------------------------------
Confidence 99999999999999999999999998865544
Q ss_pred HHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHH
Q psy3014 166 QMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQR 245 (570)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (570)
T Consensus 246 -------------------------------------------------------------------------------- 245 (895)
T KOG2076|consen 246 -------------------------------------------------------------------------------- 245 (895)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD-----ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKA 320 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 320 (570)
..+.++.+.|+...|...|.+++...|.. .......+..+...++-+.|++.++.++....+- .....
T Consensus 246 ------ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~-~~~ed 318 (895)
T KOG2076|consen 246 ------ERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE-ASLED 318 (895)
T ss_pred ------HHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-ccccH
Confidence 34566667899999999999999999832 1223445677778888899999999998732221 11455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHH---HHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 321 LQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIR---TLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 321 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
+..++.++.....++.|..............+.. ....+-..-...+..-....++-+.....++.+..+.++..++
T Consensus 319 ~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ 398 (895)
T KOG2076|consen 319 LNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEA 398 (895)
T ss_pred HHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHH
Confidence 6778889999999999988876655411110000 0000000000000000001111122244444444455555555
Q ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 398 VKEYTEAINRNP-DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK-FLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 398 ~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
+..+..--...| +.++.+..++.++...|++.+|+.++..+....+. +...|+.+|.||..+|.+++|+++|++++.+
T Consensus 399 ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 399 LLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444433222222 23455666666666666666666666665554432 3445566666666666666666666666666
Q ss_pred CCCcHHHHHHHHHHHHHhcCCHH
Q psy3014 476 DASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 476 ~p~~~~~~~~l~~~~~~~~~~~e 498 (570)
.|++.+++..|+.++.++|+..+
T Consensus 479 ~p~~~D~Ri~Lasl~~~~g~~Ek 501 (895)
T KOG2076|consen 479 APDNLDARITLASLYQQLGNHEK 501 (895)
T ss_pred CCCchhhhhhHHHHHHhcCCHHH
Confidence 66666666666666666665443
No 28
>KOG2003|consensus
Probab=99.95 E-value=2.4e-25 Score=197.39 Aligned_cols=443 Identities=16% Similarity=0.143 Sum_probs=327.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCC-----ChhHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKL--DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD-----WPKGY 82 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~ 82 (570)
....++.++..|.....+.+|+..|+-.++. .|+......++|.++++..+|.+|+++|+.++..-|. ....+
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 3567899999999999999999999988764 5888888999999999999999999999999988886 34667
Q ss_pred hHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhh-----hCCCCCC
Q psy3014 83 SRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQ-----LDPRTKP 157 (570)
Q Consensus 83 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 157 (570)
.+.|..+.+.|+|+.|+..|+.+++..|+...++... .++...++.+.-...+.+++..|.....-. .+|....
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~-i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLI-ICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhh-hhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 8889999999999999999999999999876655433 333332333333333444333222211110 0000000
Q ss_pred ---CCCChHHHHHHHHHhhCch--------------------------------------------hHHhhccCccHHHH
Q psy3014 158 ---FLSDPSYVQMIKEIQKDPS--------------------------------------------LMTTKLKDPRMMTT 190 (570)
Q Consensus 158 ---~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~ 190 (570)
.+....+.+..+.-....+ ....++.+......
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 0000001111110000000 00111111111111
Q ss_pred HHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHH--ccCHHHHHH
Q psy3014 191 LSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYK--KKNFEEALA 268 (570)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~ 268 (570)
.+.+.-.. -..+.....+-.++..+++. -.++..|..
T Consensus 439 ieilkv~~-----------------------------------------~kdnk~~saaa~nl~~l~flqggk~~~~aqq 477 (840)
T KOG2003|consen 439 IEILKVFE-----------------------------------------KKDNKTASAAANNLCALRFLQGGKDFADAQQ 477 (840)
T ss_pred HHHHHHHH-----------------------------------------hccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence 11110000 00011222333444444444 346788888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy3014 269 HYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEH 348 (570)
Q Consensus 269 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 348 (570)
+-..++.++..++.++.+.|.+-+..|++++|.+.|+.++..+... .++++++|..+..+|+.++|+.+|-+....-
T Consensus 478 yad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc---~ealfniglt~e~~~~ldeald~f~klh~il 554 (840)
T KOG2003|consen 478 YADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC---TEALFNIGLTAEALGNLDEALDCFLKLHAIL 554 (840)
T ss_pred HHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH---HHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence 8888888888888999999999999999999999999999888888 8999999999999999999999988765533
Q ss_pred CC--------HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 349 RT--------PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAA 420 (570)
Q Consensus 349 ~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 420 (570)
.+ ..++..+.+..+|++.+-++...-|+++.++..+|.+|-+.|+-.+|..++-......|.+.+..-.+|.
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a 634 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA 634 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence 22 3456667778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCH
Q psy3014 421 CYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 421 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 497 (570)
.|....-+++|+.+|+++--+.|+........+.|+.+.|+|+.|.+.|+..-...|.+.+.+.-|.++...+|-.+
T Consensus 635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988744
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.95 E-value=5.7e-24 Score=215.55 Aligned_cols=392 Identities=12% Similarity=0.002 Sum_probs=294.5
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
.|..+...+..+.+.+++|+++.|+..|+++++.+|+++.....++.++...|+.++|+..+++++.-.|........+|
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA 109 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA 109 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 35578899999999999999999999999999999999655448888999999999999999999933344444444558
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ 166 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (570)
.++...|++++|+..|+++++.+|+++.++..++.++...+....+...+.++.
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~-------------------------- 163 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA-------------------------- 163 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc--------------------------
Confidence 899999999999999999999999999999888777665211111111111110
Q ss_pred HHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHH
Q psy3014 167 MIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRS 246 (570)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (570)
...|..
T Consensus 164 --------------------------------------------------------------------------~~dp~~ 169 (822)
T PRK14574 164 --------------------------------------------------------------------------ERDPTV 169 (822)
T ss_pred --------------------------------------------------------------------------ccCcch
Confidence 011121
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHH----------------------
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQY---------------------- 304 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~---------------------- 304 (570)
.. +..++.++...++..+|+..++++++.+|++..++..+..++...|-...|.+..
T Consensus 170 ~~-~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~ 248 (822)
T PRK14574 170 QN-YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAE 248 (822)
T ss_pred HH-HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHH
Confidence 11 2344555555777777999999999999999888877777766665554444333
Q ss_pred --------------------------HHHhhc---ccCh-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC---C-
Q psy3014 305 --------------------------IQKIEN---RADF-KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHR---T- 350 (570)
Q Consensus 305 --------------------------~~~l~~---~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~- 350 (570)
++.+.. .|.. +....+....-.++...|++.+++..|+....... .
T Consensus 249 ~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 249 QVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred HHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 333331 1211 11133444555667778888888888888775442 2
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHhcCCh------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----------
Q psy3014 351 -----PEIRTLISEMEKKIKEEEKKAYIDP------VKAEEAKERGNELFKNGKYADAVKEYTEAINRNP---------- 409 (570)
Q Consensus 351 -----~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---------- 409 (570)
++.+...++.++|...+..++...| ........+...+...+++++|..++++..+..|
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~ 408 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG 408 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence 3455666778889999988877542 2334456788888999999999999999887444
Q ss_pred -----CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy3014 410 -----DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484 (570)
Q Consensus 410 -----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 484 (570)
+...+...++.++...|++.+|.+.+++.+...|.++..+..+|.++...|.+.+|...++.+..++|++..+..
T Consensus 409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~ 488 (822)
T PRK14574 409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILER 488 (822)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHH
Confidence 234577788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHH
Q psy3014 485 GYRQCSIAVSSNPEE 499 (570)
Q Consensus 485 ~l~~~~~~~~~~~e~ 499 (570)
.++.+...+++..++
T Consensus 489 ~~~~~al~l~e~~~A 503 (822)
T PRK14574 489 AQAETAMALQEWHQM 503 (822)
T ss_pred HHHHHHHhhhhHHHH
Confidence 999999999986654
No 30
>KOG0550|consensus
Probab=99.94 E-value=3.4e-25 Score=194.21 Aligned_cols=323 Identities=25% Similarity=0.382 Sum_probs=268.8
Q ss_pred hhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhH
Q psy3014 5 QSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSR 84 (570)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 84 (570)
......++.....|..++...+|.+|+..|..|++..|+++..|.+.+.+++..|++++|+-..++.++++|..+..+..
T Consensus 43 ~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r 122 (486)
T KOG0550|consen 43 QEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLR 122 (486)
T ss_pred chHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccc
Confidence 34557788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHH
Q psy3014 85 KGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY 164 (570)
Q Consensus 85 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (570)
.+.|+..+++..+|...++ +..+. ..+..+.. +..+.
T Consensus 123 ~~~c~~a~~~~i~A~~~~~--------~~~~~-~~anal~~----------~~~~~------------------------ 159 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLK--------SKQAY-KAANALPT----------LEKLA------------------------ 159 (486)
T ss_pred hhhhhhhhHHHHHHHHHhh--------hhhhh-HHhhhhhh----------hhccc------------------------
Confidence 9999999999999998887 11111 00000000 00000
Q ss_pred HHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhH
Q psy3014 165 VQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQ 244 (570)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (570)
......|
T Consensus 160 -------------------------------------------------------------------------~s~s~~p 166 (486)
T KOG0550|consen 160 -------------------------------------------------------------------------PSHSREP 166 (486)
T ss_pred -------------------------------------------------------------------------ccccCCc
Confidence 0000012
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
.-..+....+.++...|++++|...--..+++++.+.++++..|.+++..++.+.|+..|++++.++|++.....
T Consensus 167 ac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~----- 241 (486)
T KOG0550|consen 167 ACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKS----- 241 (486)
T ss_pred hhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHh-----
Confidence 334455567888888999999999999999999999999999999999999999999999999999998721111
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
.+ ..|.....+...|.-.++.|++.+|.++|..+
T Consensus 242 ---------------~~-------------------------------~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea 275 (486)
T KOG0550|consen 242 ---------------AS-------------------------------MMPKKLEVKKERGNDAFKNGNYRKAYECYTEA 275 (486)
T ss_pred ---------------Hh-------------------------------hhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence 11 44556667888899999999999999999999
Q ss_pred HhcCCCC----HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 405 INRNPDD----PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 405 l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
|.++|++ ...|.++|.+..++|+..+|+..++.++.++|....++...|.|+..+++|++|+++|+++++...+ .
T Consensus 276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~ 354 (486)
T KOG0550|consen 276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-C 354 (486)
T ss_pred hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c
Confidence 9999985 5579999999999999999999999999999999999999999999999999999999999999877 7
Q ss_pred HHHHHHHHHHHHhcC
Q psy3014 481 EAVEGYRQCSIAVSS 495 (570)
Q Consensus 481 ~~~~~l~~~~~~~~~ 495 (570)
+....+..+...+.+
T Consensus 355 e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 355 EIRRTLREAQLALKK 369 (486)
T ss_pred chHHHHHHHHHHHHH
Confidence 777777777777765
No 31
>KOG1155|consensus
Probab=99.94 E-value=9.6e-23 Score=181.47 Aligned_cols=374 Identities=16% Similarity=0.132 Sum_probs=250.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccC---HHHH----------------HHHHhchhc
Q psy3014 13 LLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN---YEKA----------------LEDAEKTIS 73 (570)
Q Consensus 13 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A----------------~~~~~~al~ 73 (570)
..+.+|..++....|+.|.-.++.... +. .++..-.+.+-.|. -++- +..+.+-++
T Consensus 80 ~~y~laks~fd~kEf~Raa~fL~~~~s--~k---~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le 154 (559)
T KOG1155|consen 80 DIYLLAKSYFDCKEFERAAFFLQNCKS--KK---SAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLE 154 (559)
T ss_pred chhhhHhhhhhhHHHHHHHHHHHhcch--HH---HHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHH
Confidence 457789999999999999999888743 22 12211112111111 1111 112222221
Q ss_pred c----CCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHh
Q psy3014 74 L----KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQL 149 (570)
Q Consensus 74 ~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (570)
. ...++..++..|.++.+.|....|+..|..++...|-+-.+|..|..+...... ...+
T Consensus 155 ~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~-----------------~~~l 217 (559)
T KOG1155|consen 155 SKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEI-----------------LSIL 217 (559)
T ss_pred HHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHH-----------------HHHH
Confidence 1 123577889999999999999999999999999999999999988877654100 0000
Q ss_pred hh-CCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy3014 150 QL-DPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPP 228 (570)
Q Consensus 150 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (570)
.. .+..
T Consensus 218 ~~~l~~~------------------------------------------------------------------------- 224 (559)
T KOG1155|consen 218 VVGLPSD------------------------------------------------------------------------- 224 (559)
T ss_pred HhcCccc-------------------------------------------------------------------------
Confidence 00 0000
Q ss_pred CCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy3014 229 AKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEF-DPTDITFQNNIAAVYFERKEYDQCIEQYIQK 307 (570)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 307 (570)
...-.-+.++.++......++++.-++..+.. .|.+...-...|.+.....++++|+..|+.+
T Consensus 225 ----------------~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei 288 (559)
T KOG1155|consen 225 ----------------MHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEI 288 (559)
T ss_pred ----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 00111122344444444555555555555555 5555555555555555555555665555555
Q ss_pred hhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--cCC------HHHHHHHHHHHHHHHHHHHHhcCChhhHH
Q psy3014 308 IENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSE--HRT------PEIRTLISEMEKKIKEEEKKAYIDPVKAE 379 (570)
Q Consensus 308 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 379 (570)
.+.+|-. ..-.-....++.-.++-.+-.-.-..+... .+. +..+...++.++|+..|++++..+|....
T Consensus 289 ~knDPYR---l~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~ 365 (559)
T KOG1155|consen 289 RKNDPYR---LDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLS 365 (559)
T ss_pred HhcCCCc---chhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhH
Confidence 5555533 111222222222222111111111111111 111 33444445555555555555559999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q psy3014 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM 459 (570)
Q Consensus 380 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 459 (570)
+|..+|.-|..+++...|+..|+.|++++|.+..+|+.+|..|.-++...=|+-+|++|+...|+++..|..+|.||.++
T Consensus 366 aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 366 AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL 445 (559)
T ss_pred HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHHH
Q psy3014 460 QQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEEV 500 (570)
Q Consensus 460 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~~ 500 (570)
++.++|+++|.+++.....+..++..|++++.++++..+++
T Consensus 446 ~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred ccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999966644
No 32
>KOG1173|consensus
Probab=99.94 E-value=1.1e-23 Score=192.14 Aligned_cols=298 Identities=18% Similarity=0.205 Sum_probs=264.3
Q ss_pred hhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHH
Q psy3014 3 NLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGY 82 (570)
Q Consensus 3 ~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 82 (570)
.+-+...+.+.+..++..++..++|.+-.+.++..++.+|-++.++-..-.|+..+|+..+=...-.+.++..|+.+-.|
T Consensus 236 sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW 315 (611)
T KOG1173|consen 236 SLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSW 315 (611)
T ss_pred hhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcch
Confidence 34456678899999999999999999999999999999999887765444499999999998889999999999999999
Q ss_pred hHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCCh
Q psy3014 83 SRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP 162 (570)
Q Consensus 83 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (570)
+..|..|...|++.+|.++|.++..++|....+|.++
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~f------------------------------------------- 352 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAF------------------------------------------- 352 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHH-------------------------------------------
Confidence 9999999999999999999999999999887777654
Q ss_pred HHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccch
Q psy3014 163 SYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTD 242 (570)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (570)
T Consensus 353 -------------------------------------------------------------------------------- 352 (611)
T KOG1173|consen 353 -------------------------------------------------------------------------------- 352 (611)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
|..+...|..++|+.+|..|-++.|........+|.-|.+.++++-|.+.|.+++.+.|.+ +-++.
T Consensus 353 -----------ghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D---plv~~ 418 (611)
T KOG1173|consen 353 -----------GHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD---PLVLH 418 (611)
T ss_pred -----------hHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc---chhhh
Confidence 5555558899999999999999999998889999999999999999999999999999999 88999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
.+|.+.+..+.|.+|..+|+.++...+. .....+.-...+.++|.++.+.+.+++|+.+|+
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~-------------------~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKS-------------------VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhh-------------------ccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999842111 000122234568899999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy3014 403 EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKIL 456 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 456 (570)
+++.+.|.++.++..+|.+|..+|+++.|++.|.+++.+.|++..+--.|+.+.
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999977666666443
No 33
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.93 E-value=4.5e-22 Score=201.88 Aligned_cols=408 Identities=11% Similarity=0.038 Sum_probs=279.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
....+..+|..+...|+|++|++.|+++++.+|+++.++..++.++...++.++|+..+++++..+|.+... ..++.++
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence 344555557777777888888888888888888877777777777777788888888888887777775444 5556666
Q ss_pred hhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHH-----
Q psy3014 90 SYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY----- 164 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 164 (570)
...++..+|+..|+++++.+|++.++...+..+....+....+.+. ....| .++...+.
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l-------------~~~~p---~~f~~~~~~~l~~ 243 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRL-------------AKENP---NLVSAEHYRQLER 243 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHH-------------HHhCc---cccCHHHHHHHHH
Confidence 5566666688888888888888777776666665552222111110 01111 11111111
Q ss_pred HHHHHHHhhC--ch-h-HHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q psy3014 165 VQMIKEIQKD--PS-L-MTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNL 240 (570)
Q Consensus 165 ~~~~~~~~~~--~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (570)
..+...+... +. . ...+....+....+..++...... |
T Consensus 244 ~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~------------------------------p-------- 285 (822)
T PRK14574 244 DAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKD------------------------------P-------- 285 (822)
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCC------------------------------C--------
Confidence 1111111111 00 0 000000001111111111100000 0
Q ss_pred chhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh---hH
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD-PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF---KL 316 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~ 316 (570)
...+..-.+....-.++...|++.+++..|+...... |-...+....|..|+..++.++|+.+|.+++...|+. +.
T Consensus 286 ~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~ 365 (822)
T PRK14574 286 EAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSD 365 (822)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCc
Confidence 0011233455566667788999999999999987655 3456688899999999999999999999998765321 00
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHH
Q psy3014 317 IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYAD 396 (570)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (570)
.......|...|...+++++|..++++.....|. .+. ..+.. .-..+|+..+....++.++...|++.+
T Consensus 366 ~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~-~~~-~~~~~---------~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 366 DLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY-QVG-VYGLP---------GKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred chHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-EEe-ccCCC---------CCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 1333567888999999999999999999875441 000 00000 000566778888899999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 397 AVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 397 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
|.+.+++.+...|.++.++..+|.++...|.+..|...++.+..++|++..+...+|.++..+|++.+|.....++++..
T Consensus 435 Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 435 AQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHH
Q psy3014 477 ASNAEAV 483 (570)
Q Consensus 477 p~~~~~~ 483 (570)
|+++.+.
T Consensus 515 Pe~~~~~ 521 (822)
T PRK14574 515 PEDIPSQ 521 (822)
T ss_pred CCchhHH
Confidence 9999665
No 34
>KOG2076|consensus
Probab=99.93 E-value=2.8e-22 Score=192.94 Aligned_cols=342 Identities=17% Similarity=0.172 Sum_probs=259.3
Q ss_pred CchhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChh
Q psy3014 1 MENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPK 80 (570)
Q Consensus 1 ~~~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 80 (570)
+|.+.+.|..+.+|+.+|.+|-++|+.+++...+-.|-.++|++...|..++....++|++..|.-+|.+||+.+|.+..
T Consensus 163 ~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~ 242 (895)
T KOG2076|consen 163 MEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWE 242 (895)
T ss_pred HHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchH
Confidence 36778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCC
Q psy3014 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS 160 (570)
Q Consensus 81 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (570)
..+.++.+|.++|+...|...|.+++...|. .+.......+
T Consensus 243 ~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~-~d~er~~d~i-------------------------------------- 283 (895)
T KOG2076|consen 243 LIYERSSLYQKTGDLKRAMETFLQLLQLDPP-VDIERIEDLI-------------------------------------- 283 (895)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHhhCCc-hhHHHHHHHH--------------------------------------
Confidence 9999999999999999999999999999992 2221111111
Q ss_pred ChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q psy3014 161 DPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNL 240 (570)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (570)
T Consensus 284 -------------------------------------------------------------------------------- 283 (895)
T KOG2076|consen 284 -------------------------------------------------------------------------------- 283 (895)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhh--cccCh--
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEF--DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE--NRADF-- 314 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~~~~-- 314 (570)
...+..+...++-+.|++.++.++.. +-....-+..++.+++....++.|......... ..+++
T Consensus 284 ----------~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e 353 (895)
T KOG2076|consen 284 ----------RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE 353 (895)
T ss_pred ----------HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh
Confidence 12345555566667788888877773 222344556777778888888888777665543 11111
Q ss_pred ----------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhc
Q psy3014 315 ----------------------KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372 (570)
Q Consensus 315 ----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 372 (570)
..+..+...++.+..+.++..+++..+-.--..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~------------------------- 408 (895)
T KOG2076|consen 354 WDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV------------------------- 408 (895)
T ss_pred hhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC-------------------------
Confidence 011112444444444555555554444322210
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD-DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR 451 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 451 (570)
...+.++.+..++.++...|++.+|+.+|..+....+. +..+|+.+|.||..+|.+++|+++|++++...|++.++...
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~ 488 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARIT 488 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhh
Confidence 12345778888999999999999999999988877553 46789999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCCC---------cHHHHHHHHHHHHHhcCC
Q psy3014 452 KGKILQGMQQQSKAIDAYEKALELDAS---------NAEAVEGYRQCSIAVSSN 496 (570)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~~~~ 496 (570)
++.++.++|+.++|.+.+++...-||. +..+......++...|+.
T Consensus 489 Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 489 LASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred HHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 999999999999999998887644422 234456677777777773
No 35
>KOG0495|consensus
Probab=99.92 E-value=3.7e-21 Score=178.33 Aligned_cols=371 Identities=13% Similarity=0.078 Sum_probs=294.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
.-..|..-+..+...+-++-|+..|..+|+..|.....|...+..-...|..++-...+++++...|.....|+..+..+
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 34578888899999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHH
Q psy3014 90 SYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIK 169 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (570)
...|+...|...+.++++.+|++.++|..-..+...... +..+..
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e-----------------------------------~eraR~ 639 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDE-----------------------------------LERARD 639 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhcccc-----------------------------------HHHHHH
Confidence 999999999999999999999999988765555433110 000000
Q ss_pred HHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHH
Q psy3014 170 EIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKK 249 (570)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (570)
. +...... ......
T Consensus 640 l--------------------lakar~~----------------------------------------------sgTeRv 653 (913)
T KOG0495|consen 640 L--------------------LAKARSI----------------------------------------------SGTERV 653 (913)
T ss_pred H--------------------HHHHhcc----------------------------------------------CCcchh
Confidence 0 0000000 023456
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYK 329 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 329 (570)
|+.-+.+..-+++.++|+.+++++++..|+....|..+|.++..+++.+.|...|...++..|.. ...|..++.+-.
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~---ipLWllLakleE 730 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS---IPLWLLLAKLEE 730 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC---chHHHHHHHHHH
Confidence 66677777788889999999999999999999999999999999999999999999999999988 888888888888
Q ss_pred HcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q psy3014 330 KMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP 409 (570)
Q Consensus 330 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 409 (570)
..|..-.|...++++.- .+|.+...|.....+-++.|+.+.|.....+|++..|
T Consensus 731 k~~~~~rAR~ildrarl--------------------------kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp 784 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARL--------------------------KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECP 784 (913)
T ss_pred HhcchhhHHHHHHHHHh--------------------------cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88888888888888887 7888888888888888889999999999999998888
Q ss_pred CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy3014 410 DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489 (570)
Q Consensus 410 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 489 (570)
++...|..--.+.-+-++-..++..+++ ...++.++...|..+....++++|.++|.++++.+|++.++|..+-..
T Consensus 785 ~sg~LWaEaI~le~~~~rkTks~DALkk----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykf 860 (913)
T KOG0495|consen 785 SSGLLWAEAIWLEPRPQRKTKSIDALKK----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKF 860 (913)
T ss_pred ccchhHHHHHHhccCcccchHHHHHHHh----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHH
Confidence 8887777666655555555555544443 466777888888888888888888888888888888888888888888
Q ss_pred HHHhcCCH--HHHH-HHHcCCchHHHhh
Q psy3014 490 SIAVSSNP--EEVR-KRAMGDPEVQQIL 514 (570)
Q Consensus 490 ~~~~~~~~--e~~~-~~~~~~p~~~~~~ 514 (570)
....|... ..++ .....+|..-..+
T Consensus 861 el~hG~eed~kev~~~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 861 ELRHGTEEDQKEVLKKCETAEPTHGELW 888 (913)
T ss_pred HHHhCCHHHHHHHHHHHhccCCCCCcHH
Confidence 88888533 2232 2233455544443
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.92 E-value=9.9e-25 Score=199.96 Aligned_cols=186 Identities=24% Similarity=0.326 Sum_probs=97.1
Q ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc--cChhHHHHHHHHHHHHHHHcCCHHH
Q psy3014 259 KKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR--ADFKLIAKALQRIGNCYKKMEDWKN 336 (570)
Q Consensus 259 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ 336 (570)
..+++++|+.+++++.+..+ ++..+.....++...++++++...++++.... +++ +..+..+|.++.+.|++++
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS---ARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T----HHHHHHHHHHHHHCCHHHH
T ss_pred cccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC---HHHHHHHHHHHHHcCCHHH
Confidence 45667777777776666543 35555666666777777777777777765433 333 6677777777777777777
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy3014 337 AKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYS 416 (570)
Q Consensus 337 A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 416 (570)
|+..|++++. .+|+++.+...++.++...|+++++...+....+..|+++..+.
T Consensus 165 A~~~~~~al~--------------------------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (280)
T PF13429_consen 165 ALRDYRKALE--------------------------LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD 218 (280)
T ss_dssp HHHHHHHHHH--------------------------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH
T ss_pred HHHHHHHHHH--------------------------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH
Confidence 7777777777 67777777777777777777777777777777666677777777
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 417 NRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 417 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
.+|.++..+|++++|+.+|++++..+|+++..+..+|.++...|+.++|..++++++.
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7777777777777777777777777777777777777777777777777777777664
No 37
>KOG1125|consensus
Probab=99.92 E-value=3.2e-23 Score=190.18 Aligned_cols=244 Identities=15% Similarity=0.137 Sum_probs=218.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKK 330 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 330 (570)
+..|..+++.|+..+|.-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++ ..++..||..|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N---leaLmaLAVSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTN---LEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc---HHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred cCCHHHHHHHHHHHhcccCCHH---------------HHHHHHHHHHHHHHHHHHhcCCh--hhHHHHHHHHHHHHHCCC
Q psy3014 331 MEDWKNAKVYFEKSMSEHRTPE---------------IRTLISEMEKKIKEEEKKAYIDP--VKAEEAKERGNELFKNGK 393 (570)
Q Consensus 331 ~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 393 (570)
.|.-.+|+.++.+.+...+... .......+..-.+.|-.+....| .++++...||.+|...|+
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 9999999999999987664411 11122234444555666666677 789999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy3014 394 YADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKAL 473 (570)
Q Consensus 394 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 473 (570)
|++|+.||+.|+...|++...|+.||..+....+.++|+..|.+|+++.|.+..+++++|..+..+|.|++|.++|-.||
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCC----------cHHHHHHHHHHHHHhcCCH
Q psy3014 474 ELDAS----------NAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 474 ~~~p~----------~~~~~~~l~~~~~~~~~~~ 497 (570)
.+.+. +..+|..|..++..+++.+
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 98765 2358888888888887754
No 38
>KOG0548|consensus
Probab=99.92 E-value=2.1e-21 Score=176.79 Aligned_cols=333 Identities=19% Similarity=0.264 Sum_probs=257.6
Q ss_pred hchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q psy3014 49 SNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMN 128 (570)
Q Consensus 49 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 128 (570)
...|...+..|+|+.|+.+|..+|.++|.+...|-++..+|..+|+|++|++.-.+.++++|+.+..+
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy------------ 73 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGY------------ 73 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHH------------
Confidence 34678889999999999999999999999999999999999999999999999999999999765544
Q ss_pred ccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCC
Q psy3014 129 DMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDA 208 (570)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (570)
T Consensus 74 -------------------------------------------------------------------------------- 73 (539)
T KOG0548|consen 74 -------------------------------------------------------------------------------- 73 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 209 EEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIA 288 (570)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 288 (570)
..+|..+.-.|+|++|+..|.+.|+.+|+|.....+++
T Consensus 74 ------------------------------------------~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~ 111 (539)
T KOG0548|consen 74 ------------------------------------------SRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLA 111 (539)
T ss_pred ------------------------------------------HHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHH
Confidence 45677777789999999999999999999988888887
Q ss_pred HHHHHhcC------------------------HHHHHHHHHHHhhcccCh------------------------------
Q psy3014 289 AVYFERKE------------------------YDQCIEQYIQKIENRADF------------------------------ 314 (570)
Q Consensus 289 ~~~~~~~~------------------------~~~A~~~~~~~l~~~~~~------------------------------ 314 (570)
.++..... .+.+.....+.+..+|.+
T Consensus 112 ~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~ 191 (539)
T KOG0548|consen 112 QAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGI 191 (539)
T ss_pred HhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccccccccc
Confidence 77622200 011111111111222211
Q ss_pred -----------------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCH-------HHHHHHH
Q psy3014 315 -----------------------------KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTP-------EIRTLIS 358 (570)
Q Consensus 315 -----------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~ 358 (570)
.........+|.......++..|++.|.+++.+.... .++..++
T Consensus 192 ~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~ 271 (539)
T KOG0548|consen 192 EILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERG 271 (539)
T ss_pred ccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhcc
Confidence 1235567888999999999999999999999888332 2334445
Q ss_pred HHHHHHHHHHHHhcCChh-------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------------------
Q psy3014 359 EMEKKIKEEEKKAYIDPV-------KAEEAKERGNELFKNGKYADAVKEYTEAINRN----------------------- 408 (570)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----------------------- 408 (570)
.+...+.....+++..-. -......+|..+.+.++++.|+.+|.+++...
T Consensus 272 ~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a 351 (539)
T KOG0548|consen 272 KYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKA 351 (539)
T ss_pred HHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555443322 23344456778888999999999999987643
Q ss_pred ---CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy3014 409 ---PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485 (570)
Q Consensus 409 ---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 485 (570)
|.-..--...|..++..|+|..|+..|.++|..+|+++..|.++|.||.++|++..|+...+++++++|++..++..
T Consensus 352 ~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~R 431 (539)
T KOG0548|consen 352 YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLR 431 (539)
T ss_pred hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHH
Confidence 22223344568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCH---HHHHHHHcCCchHHHhhc
Q psy3014 486 YRQCSIAVSSNP---EEVRKRAMGDPEVQQILR 515 (570)
Q Consensus 486 l~~~~~~~~~~~---e~~~~~~~~~p~~~~~~~ 515 (570)
-+.++..+.+.+ +...+.+..||...++..
T Consensus 432 Kg~al~~mk~ydkAleay~eale~dp~~~e~~~ 464 (539)
T KOG0548|consen 432 KGAALRAMKEYDKALEAYQEALELDPSNAEAID 464 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 999999999844 444566677888776654
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.92 E-value=1.9e-21 Score=187.18 Aligned_cols=303 Identities=9% Similarity=0.006 Sum_probs=242.6
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCCh-hHHhHHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWP-KGYSRKGS 87 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~ 87 (570)
..+......|...+..|+++.|.+.+.++.+..|+....+...|.+...+|+++.|..++.++.+..|++. .+....+.
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence 35667788899999999999999999999999888777788889999999999999999999999888875 56666799
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQM 167 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (570)
++...|++++|...++++++..|+++.++..
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~l------------------------------------------------- 192 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKL------------------------------------------------- 192 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-------------------------------------------------
Confidence 9999999999999999999999988766543
Q ss_pred HHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHH
Q psy3014 168 IKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSA 247 (570)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (570)
T Consensus 193 -------------------------------------------------------------------------------- 192 (409)
T TIGR00540 193 -------------------------------------------------------------------------------- 192 (409)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH----HHHHHHHHhcCHHHHHHHHHHHhhccc----ChhHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQN----NIAAVYFERKEYDQCIEQYIQKIENRA----DFKLIAK 319 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~~~~~~A~~~~~~~l~~~~----~~~~~~~ 319 (570)
++.++...|++++|.+.+.+..+..+.++.... ....-....+..+++.+.+.++....| ++ +.
T Consensus 193 -----l~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~---~~ 264 (409)
T TIGR00540 193 -----AEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHN---IA 264 (409)
T ss_pred -----HHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCC---HH
Confidence 566666789999999999999887554443321 222222445555666677777777766 35 78
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHH--HHHHHHHHHCCCHHHH
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEA--KERGNELFKNGKYADA 397 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~A 397 (570)
.+..++..+...|++++|...++++++ ..|++.... ..........++.+.+
T Consensus 265 l~~~~a~~l~~~g~~~~A~~~l~~~l~--------------------------~~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 265 LKIALAEHLIDCDDHDSAQEIIFDGLK--------------------------KLGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHh--------------------------hCCCcccchhHHHHHhhhcCCCChHHH
Confidence 888899999999999999999999998 455544321 2233333445778889
Q ss_pred HHHHHHHHhcCCCCH--HHHHHHHHHHHHhcChHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy3014 398 VKEYTEAINRNPDDP--KYYSNRAACYTKLAAFDLGLKDCE--TCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKAL 473 (570)
Q Consensus 398 ~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 473 (570)
++.++++++.+|+++ .++..+|+++.+.|++++|.++|+ ++++..|+... +..+|.++.+.|+.++|.++|++++
T Consensus 319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999 888899999999999999999999 57778887765 5589999999999999999999986
Q ss_pred hh
Q psy3014 474 EL 475 (570)
Q Consensus 474 ~~ 475 (570)
..
T Consensus 398 ~~ 399 (409)
T TIGR00540 398 GL 399 (409)
T ss_pred HH
Confidence 54
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.91 E-value=2e-24 Score=197.95 Aligned_cols=264 Identities=19% Similarity=0.236 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHh
Q psy3014 13 LLKDKGNAALQANNFIEAIEAYSEAIKL--DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALS 90 (570)
Q Consensus 13 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 90 (570)
..+..|..++..|++++|++.+.+.+.. .|+++..|..+|.+....+++++|+..|++++..+|.++..+..++.+ .
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 3346799999999999999999765544 478888899999999999999999999999999998888888888888 7
Q ss_pred hccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHH
Q psy3014 91 YLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKE 170 (570)
Q Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (570)
..+++++|+..++++.+..++ +..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~-~~~------------------------------------------------------- 112 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGD-PRY------------------------------------------------------- 112 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc-cch-------------------------------------------------------
Confidence 889999999988887765542 211
Q ss_pred HhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHH
Q psy3014 171 IQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKE 250 (570)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (570)
+
T Consensus 113 -------------------------------------------------------------------------------l 113 (280)
T PF13429_consen 113 -------------------------------------------------------------------------------L 113 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------------------------------h
Confidence 2
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFD--PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCY 328 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 328 (570)
.....++...++++++...++++.... |.++.+|..+|.++.+.|++++|+..++++++.+|++ ..+...++.++
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~---~~~~~~l~~~l 190 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD---PDARNALAWLL 190 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT----HHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHH
Confidence 224456677899999999999987655 6789999999999999999999999999999999999 88999999999
Q ss_pred HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 408 (570)
...|+.+++...++.... ..|.++..+..+|.++...|++++|+.+|+++++.+
T Consensus 191 i~~~~~~~~~~~l~~~~~--------------------------~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 191 IDMGDYDEAREALKRLLK--------------------------AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp CTTCHHHHHHHHHHHHHH--------------------------H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHCCChHHHHHHHHHHHH--------------------------HCcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999999999888888877 557778889999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Q psy3014 409 PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441 (570)
Q Consensus 409 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 441 (570)
|+++..+..+|.++...|+.++|..++.+++..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999988753
No 41
>KOG1174|consensus
Probab=99.91 E-value=7.5e-22 Score=173.19 Aligned_cols=331 Identities=15% Similarity=0.084 Sum_probs=274.0
Q ss_pred HHHHccCCCCcchhh---chhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCC
Q psy3014 35 SEAIKLDGTNHILFS---NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN 111 (570)
Q Consensus 35 ~~al~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 111 (570)
..++..+|..++.+. ..|.|+....-+..+..++-.-...-|+|...+..+|.+++..|++.+|+-.|+++..++|.
T Consensus 185 m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy 264 (564)
T KOG1174|consen 185 MHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD 264 (564)
T ss_pred hhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh
Confidence 345566776655543 34555555555666677777778888999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHH
Q psy3014 112 NEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTL 191 (570)
Q Consensus 112 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (570)
+.......+.++...++...... ..
T Consensus 265 ~i~~MD~Ya~LL~~eg~~e~~~~-------------------------------------------------------L~ 289 (564)
T KOG1174|consen 265 NVEAMDLYAVLLGQEGGCEQDSA-------------------------------------------------------LM 289 (564)
T ss_pred hhhhHHHHHHHHHhccCHhhHHH-------------------------------------------------------HH
Confidence 88887777766655222111000 00
Q ss_pred HHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy3014 192 SVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYN 271 (570)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 271 (570)
..++.+ ....+.-|+--|...+..+++..|+.+-+
T Consensus 290 ~~Lf~~---------------------------------------------~~~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 290 DYLFAK---------------------------------------------VKYTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred HHHHhh---------------------------------------------hhcchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 011110 01234556777888899999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCH
Q psy3014 272 KAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTP 351 (570)
Q Consensus 272 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 351 (570)
++|..+|.+..++...|.++...|+.++|+-.|+.+..+.|.. .++|..+-.+|...|++.+|...-+.++.
T Consensus 325 K~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r---L~~Y~GL~hsYLA~~~~kEA~~~An~~~~----- 396 (564)
T KOG1174|consen 325 KCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR---LEIYRGLFHSYLAQKRFKEANALANWTIR----- 396 (564)
T ss_pred HHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh---HHHHHHHHHHHHhhchHHHHHHHHHHHHH-----
Confidence 9999999999999999999999999999999999999999998 99999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHH-HHHHHC-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChH
Q psy3014 352 EIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERG-NELFKN-GKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFD 429 (570)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 429 (570)
.-|.++.++..+| .+++.. .--++|.+.+++++.+.|....+-..+|.++...|.++
T Consensus 397 ---------------------~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 397 ---------------------LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred ---------------------HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccc
Confidence 6777888888886 555433 33578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 430 LGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 430 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
.++..+++.+...|++ ..+..+|.++...+.+++|+++|..|+.++|++..+..++..+......
T Consensus 456 D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~ 520 (564)
T KOG1174|consen 456 DIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDE 520 (564)
T ss_pred hHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCC
Confidence 9999999999998875 4788999999999999999999999999999999999999988887775
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=99.91 E-value=7.2e-22 Score=197.30 Aligned_cols=267 Identities=13% Similarity=0.095 Sum_probs=223.7
Q ss_pred HHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc---------CHHHHHHHHHHHhhcccC
Q psy3014 246 SAKKEKELGNEAYKK---KNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK---------EYDQCIEQYIQKIENRAD 313 (570)
Q Consensus 246 ~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---------~~~~A~~~~~~~l~~~~~ 313 (570)
++..++..|..+... +.+++|+.+|+++++++|+++.++..+|.++...+ ++++|+..++++++.+|+
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~ 336 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN 336 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC
Confidence 344456666655433 45789999999999999999999999999887543 489999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC
Q psy3014 314 FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGK 393 (570)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (570)
+ +.++..+|.++...|++++|+..|++++. .+|+++.+++.+|.++...|+
T Consensus 337 ~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--------------------------l~P~~~~a~~~lg~~l~~~G~ 387 (553)
T PRK12370 337 N---PQALGLLGLINTIHSEYIVGSLLFKQANL--------------------------LSPISADIKYYYGWNLFMAGQ 387 (553)
T ss_pred C---HHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHCCC
Confidence 9 99999999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy3014 394 YADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD-PKFLKGWIRKGKILQGMQQQSKAIDAYEKA 472 (570)
Q Consensus 394 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 472 (570)
+++|+..++++++++|.++..+..++.+++..|++++|+..+++++... |+++.++..+|.++..+|++++|...+.++
T Consensus 388 ~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 388 LEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 9999999999999999998887778888888999999999999999875 788999999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHhcCCHHHHHHHHcC-----------CchHHHhhcCHHHHHHHHHhhcC-HHHHHHhhcCH
Q psy3014 473 LELDASNAEAVEGYRQCSIAVSSNPEEVRKRAMG-----------DPEVQQILRDPAMRLILEQMQND-PRALSDHLKNP 540 (570)
Q Consensus 473 l~~~p~~~~~~~~l~~~~~~~~~~~e~~~~~~~~-----------~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 540 (570)
....|++..++..++..+...|+.....+..+.. +|.+....+|+.+..+..++.++ ......+..||
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 547 (553)
T PRK12370 468 STQEITGLIAVNLLYAEYCQNSERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMWNKFKNEDNIWFKRWKQDP 547 (553)
T ss_pred hhccchhHHHHHHHHHHHhccHHHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHHHHhhccchHhhhhhhcCc
Confidence 9999999999999999999988754443333322 34555556666666666665543 33333344455
Q ss_pred H
Q psy3014 541 E 541 (570)
Q Consensus 541 ~ 541 (570)
.
T Consensus 548 ~ 548 (553)
T PRK12370 548 R 548 (553)
T ss_pred h
Confidence 4
No 43
>KOG0624|consensus
Probab=99.91 E-value=4.1e-22 Score=170.66 Aligned_cols=295 Identities=15% Similarity=0.171 Sum_probs=255.3
Q ss_pred CCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHH
Q psy3014 41 DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIK 120 (570)
Q Consensus 41 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 120 (570)
+|.+..-++.+|..++..|++..|+..|..|++.+|++..+++.+|.+|..+|+-.-|+..+.+++++.|+...+.
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR---- 109 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR---- 109 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH----
Confidence 4556777899999999999999999999999999999999999999999999999999999999999999765443
Q ss_pred HHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCccc
Q psy3014 121 DVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMS 200 (570)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (570)
T Consensus 110 -------------------------------------------------------------------------------- 109 (504)
T KOG0624|consen 110 -------------------------------------------------------------------------------- 109 (504)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q psy3014 201 STMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD 280 (570)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 280 (570)
...|.+++++|.+++|...|+.++..+|++
T Consensus 110 --------------------------------------------------iQRg~vllK~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 110 --------------------------------------------------IQRGVVLLKQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred --------------------------------------------------HHhchhhhhcccHHHHHHHHHHHHhcCCCc
Confidence 246888889999999999999999999965
Q ss_pred H---HHH------------HHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy3014 281 I---TFQ------------NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345 (570)
Q Consensus 281 ~---~~~------------~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 345 (570)
. ++. ......++..|++..|+......+++.|-+ +..+...+.||...|+...|+..++.+-
T Consensus 140 ~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd---a~l~~~Rakc~i~~~e~k~AI~Dlk~as 216 (504)
T KOG0624|consen 140 GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD---ASLRQARAKCYIAEGEPKKAIHDLKQAS 216 (504)
T ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch---hHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3 222 223344566799999999999999999998 8999999999999999999999999998
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH--------
Q psy3014 346 SEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSN-------- 417 (570)
Q Consensus 346 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 417 (570)
+ +..++.+.++.++.+++..|+.+.++...+++++++|++-..+-.
T Consensus 217 k--------------------------Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 217 K--------------------------LSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred h--------------------------ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHH
Confidence 8 788899999999999999999999999999999999987543221
Q ss_pred ----HHHHHHHhcChHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy3014 418 ----RAACYTKLAAFDLGLKDCETCLKLDPKFLKG----WIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489 (570)
Q Consensus 418 ----la~~~~~~~~~~~A~~~~~~al~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 489 (570)
-+.-....++|.++++..++.++.+|..+.. +..+-.|+..-|++.+|+.....+++++|++..++...+.+
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 1344567788999999999999999985543 34467888999999999999999999999999999999888
Q ss_pred HHHhcCCHH
Q psy3014 490 SIAVSSNPE 498 (570)
Q Consensus 490 ~~~~~~~~e 498 (570)
+..-...++
T Consensus 351 ~l~dE~YD~ 359 (504)
T KOG0624|consen 351 YLGDEMYDD 359 (504)
T ss_pred HhhhHHHHH
Confidence 876655443
No 44
>KOG4162|consensus
Probab=99.91 E-value=3.7e-21 Score=182.21 Aligned_cols=398 Identities=12% Similarity=0.067 Sum_probs=257.6
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccC--CCChhHHhHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK--PDWPKGYSRKG 86 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 86 (570)
.++..|-.+...+...|+|+.+.+.|++++...-...+.|+.++.++...|....|+...+..+... |+++..+..-+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4566777777777788888888888888877766667778888888888888888888888887777 66665555544
Q ss_pred H-HHhhccCHHHHHHHHHHhhccCCC-----cHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCC
Q psy3014 87 S-ALSYLGRYKESISTYEEGLKLDPN-----NEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS 160 (570)
Q Consensus 87 ~-~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (570)
. |....|.+++++.+-.+++..... .+..+..++..|....... ......
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a-~~~seR----------------------- 456 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQA-NLKSER----------------------- 456 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcC-CChHHH-----------------------
Confidence 4 445677788888888887774321 1223333333332200000 000000
Q ss_pred ChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q psy3014 161 DPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNL 240 (570)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (570)
+...... ...+ ++.+
T Consensus 457 ~~~h~ks--------------------lqal---------------------------------------------e~av 471 (799)
T KOG4162|consen 457 DALHKKS--------------------LQAL---------------------------------------------EEAV 471 (799)
T ss_pred HHHHHHH--------------------HHHH---------------------------------------------HHHH
Confidence 0000000 0000 1111
Q ss_pred chhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHH
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD-PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAK 319 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 319 (570)
..+|.++.+.+.++.-|..+++.+.|.....++++.+ -+++.+|..++.++...+++.+|+.....++...|++ ..
T Consensus 472 ~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N---~~ 548 (799)
T KOG4162|consen 472 QFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN---HV 548 (799)
T ss_pred hcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh---hh
Confidence 1223455666666666666666666666666666663 3446666666666666666666666666666666655 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCC----------HHH-------HHHHHHHHHHHHHHHHH--------hc--
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT----------PEI-------RTLISEMEKKIKEEEKK--------AY-- 372 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~-------~~~~~~~~~a~~~~~~~--------~~-- 372 (570)
.......+-...++.++|+..+...+..-.. ... .....+..++++....+ ..
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 3333334444455555555555444432210 000 00000001111111110 00
Q ss_pred -----------CChh-----hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHH
Q psy3014 373 -----------IDPV-----KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCE 436 (570)
Q Consensus 373 -----------~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 436 (570)
..|. ....|...+..+...+..++|..++.++-.++|..+..|+..|.++...|++.+|.+.|.
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 1111 234667788999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCCHHHHHH--HHHHHHhhCCCcHHHHHHHHHHHHHhcCCHH
Q psy3014 437 TCLKLDPKFLKGWIRKGKILQGMQQQSKAID--AYEKALELDASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 437 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e 498 (570)
.++.++|+++.+...+|.++.+.|+..-|.. .+..++++||.|+++|+.+|.+..++|+..+
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence 9999999999999999999999999888888 9999999999999999999999999999654
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.91 E-value=8.7e-22 Score=196.69 Aligned_cols=254 Identities=11% Similarity=-0.035 Sum_probs=190.6
Q ss_pred cCHHHHHHHHhchhccCCCChhHHhHHHHHHhhc---------cCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhc
Q psy3014 59 GNYEKALEDAEKTISLKPDWPKGYSRKGSALSYL---------GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129 (570)
Q Consensus 59 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 129 (570)
+.+++|+..|+++++++|+++.++..+|.++... +++++|+..++++++++|++..++..++.++..
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~---- 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI---- 350 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----
Confidence 4567888888888888888888888888776643 337788888888888888888888777665544
Q ss_pred cCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCc
Q psy3014 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAE 209 (570)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (570)
T Consensus 351 -------------------------------------------------------------------------------- 350 (553)
T PRK12370 351 -------------------------------------------------------------------------------- 350 (553)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 210 EMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAA 289 (570)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 289 (570)
.|++++|+..|+++++++|+++.+++.+|.
T Consensus 351 --------------------------------------------------~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 380 (553)
T PRK12370 351 --------------------------------------------------HSEYIVGSLLFKQANLLSPISADIKYYYGW 380 (553)
T ss_pred --------------------------------------------------ccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 577888888888888888888888888888
Q ss_pred HHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Q psy3014 290 VYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEK 369 (570)
Q Consensus 290 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 369 (570)
++...|++++|+..++++++++|.+ ...+..++.++...|++++|+..+++++..
T Consensus 381 ~l~~~G~~~eAi~~~~~Al~l~P~~---~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~---------------------- 435 (553)
T PRK12370 381 NLFMAGQLEEALQTINECLKLDPTR---AAAGITKLWITYYHTGIDDAIRLGDELRSQ---------------------- 435 (553)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCC---hhhHHHHHHHHHhccCHHHHHHHHHHHHHh----------------------
Confidence 8888888888888888888888887 555555666677778888888888887761
Q ss_pred HhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHH
Q psy3014 370 KAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 449 (570)
..|..+..+..+|.++...|++++|...+.++....|....++..++..|...|+ .|...+++.++.....+...
T Consensus 436 ---~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~ 510 (553)
T PRK12370 436 ---HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNP 510 (553)
T ss_pred ---ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCc
Confidence 2366777788888888888888888888888877777777788888888877774 66666666555433322223
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
.....++.-.|+.+.|..+ +++.+.++
T Consensus 511 ~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 511 GLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred hHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 3367777777887777777 66665543
No 46
>KOG2003|consensus
Probab=99.90 E-value=4.4e-22 Score=176.81 Aligned_cols=410 Identities=16% Similarity=0.219 Sum_probs=291.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCC-----cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTN-----HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 15 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
..+|++++++.+|.+|+++|+.++..-|.- ...+.++|..+.+.|+|+.|+..|+.+++..|+... -+++-.|+
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a-~~nl~i~~ 319 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA-ALNLIICA 319 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHh-hhhhhhhh
Confidence 467999999999999999999999998862 467889999999999999999999999999998655 45678899
Q ss_pred hhccCHHHHHHHHHHhhccC--------------CCcHHHHHHHHHHHHHhhhccCCCc------cccccCC---CchH-
Q psy3014 90 SYLGRYKESISTYEEGLKLD--------------PNNEQMKEAIKDVRNQEMNDMNRGD------PFANLFS---DPNI- 145 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~---~~~~- 145 (570)
+..|+-++-.+.|.+.+.+- |++.-....+..-...+........ ...+++. .+.+
T Consensus 320 f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa 399 (840)
T KOG2003|consen 320 FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA 399 (840)
T ss_pred eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh
Confidence 99999999999999998652 2211111111111111011100000 0000000 0000
Q ss_pred ------HHHhhhCCC-----------CCCCCCChHHHHHHHHHh---hCch-hHHhhccCccHHHHHHHHh-cCcccCCC
Q psy3014 146 ------FVQLQLDPR-----------TKPFLSDPSYVQMIKEIQ---KDPS-LMTTKLKDPRMMTTLSVLL-GVNMSSTM 203 (570)
Q Consensus 146 ------~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 203 (570)
...+..... .-.++...++..++..+. .... ..... ......+..+. |..+..
T Consensus 400 ~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saa---a~nl~~l~flqggk~~~~-- 474 (840)
T KOG2003|consen 400 AGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAA---ANNLCALRFLQGGKDFAD-- 474 (840)
T ss_pred cccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHH---hhhhHHHHHHhcccchhH--
Confidence 000100000 001222233333333221 1100 00000 00001111111 111000
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Q psy3014 204 GDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITF 283 (570)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 283 (570)
+....+..+..+..++.++.+.|.+.+..|++++|.+.|++++..+.....+
T Consensus 475 ----------------------------aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ea 526 (840)
T KOG2003|consen 475 ----------------------------AQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEA 526 (840)
T ss_pred ----------------------------HHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHH
Confidence 1111122333344677888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC-HHHHHHH-----
Q psy3014 284 QNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT-PEIRTLI----- 357 (570)
Q Consensus 284 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~----- 357 (570)
++++|..+..+|+.++|+++|-+.-.+--++ +++++.++.+|..+.+..+|++++-++...-|+ +.++..+
T Consensus 527 lfniglt~e~~~~ldeald~f~klh~il~nn---~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 527 LFNIGLTAEALGNLDEALDCFLKLHAILLNN---AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYD 603 (840)
T ss_pred HHHhcccHHHhcCHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhh
Confidence 9999999999999999999999987777677 899999999999999999999999999988776 4444444
Q ss_pred --HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHH
Q psy3014 358 --SEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDC 435 (570)
Q Consensus 358 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 435 (570)
|+-.+|..++-......|.+.++..-+|..|....-+++|+.+|+++--+.|+........+.|+.+.|+|.+|.+.|
T Consensus 604 qegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 604 QEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred cccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 455677777777777899999999999999999999999999999999999998888889999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCC
Q psy3014 436 ETCLKLDPKFLKGWIRKGKILQGMQQ 461 (570)
Q Consensus 436 ~~al~~~p~~~~~~~~l~~~~~~~g~ 461 (570)
+..-...|.+.+.+-.+.++.-.+|-
T Consensus 684 k~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 684 KDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999988888877763
No 47
>KOG1129|consensus
Probab=99.90 E-value=5.9e-23 Score=174.65 Aligned_cols=288 Identities=13% Similarity=0.105 Sum_probs=238.1
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC---CC-------CcchhhchhHHHhcccCHHHHHHHHhchhccCCC
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLD---GT-------NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 77 (570)
|.-+.++++ .+++...+...|-......++.+ |. +.+....+|.||+++|.+.+|.+.++.+++..|
T Consensus 178 p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~- 254 (478)
T KOG1129|consen 178 PTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP- 254 (478)
T ss_pred hHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-
Confidence 344445553 35566777888777666666543 21 233446789999999999999999999999886
Q ss_pred ChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCC
Q psy3014 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP 157 (570)
Q Consensus 78 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (570)
.++.+..++.+|....++..|+..|...++..|.+.......
T Consensus 255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~-------------------------------------- 296 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQ-------------------------------------- 296 (478)
T ss_pred chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhh--------------------------------------
Confidence 478899999999999999999999999999999877665544
Q ss_pred CCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 158 FLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPED 237 (570)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (570)
T Consensus 297 -------------------------------------------------------------------------------- 296 (478)
T KOG1129|consen 297 -------------------------------------------------------------------------------- 296 (478)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHH
Q psy3014 238 KNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLI 317 (570)
Q Consensus 238 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 317 (570)
+.++...+++++|.++|+.+++.+|.+.++.-.+|.-|+..++.+-|+.+|.+++++.-.+
T Consensus 297 ----------------ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s--- 357 (478)
T KOG1129|consen 297 ----------------ARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS--- 357 (478)
T ss_pred ----------------HHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC---
Confidence 4445557889999999999999999999999889999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
++.+.++|.|+...++++-++..|.+++.... .....+++|+++|.+....|++.-|
T Consensus 358 peLf~NigLCC~yaqQ~D~~L~sf~RAlstat-----------------------~~~~aaDvWYNlg~vaV~iGD~nlA 414 (478)
T KOG1129|consen 358 PELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-----------------------QPGQAADVWYNLGFVAVTIGDFNLA 414 (478)
T ss_pred hHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-----------------------CcchhhhhhhccceeEEeccchHHH
Confidence 88999999999999999999999999987543 2234578899999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG 458 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 458 (570)
..+|+-++..+|++.+++.++|.+-.+.|+.++|..++..+-...|...+..++++.+-.+
T Consensus 415 ~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s~~ 475 (478)
T KOG1129|consen 415 KRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMSVH 475 (478)
T ss_pred HHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEEeee
Confidence 9999999999999999999999999999999999999999999999888777777654433
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.90 E-value=3.9e-20 Score=177.07 Aligned_cols=300 Identities=9% Similarity=0.047 Sum_probs=237.5
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhch-hHHHhcccCHHHHHHHHhchhccCCCChhH-HhHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNR-SAAFAKEGNYEKALEDAEKTISLKPDWPKG-YSRKG 86 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la 86 (570)
..+...+..|...+..|+|++|.+...++-...+. +..++.+ +.+....|+++.|..++.++.+.+|++..+ ....+
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a 160 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRV 160 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 45677889999999999999999888876554333 4555545 556699999999999999999999997544 44559
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ 166 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (570)
.++...|++++|+..++++.+.+|+++.+...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~l------------------------------------------------ 192 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRL------------------------------------------------ 192 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH------------------------------------------------
Confidence 99999999999999999999999998877654
Q ss_pred HHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHH
Q psy3014 167 MIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRS 246 (570)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (570)
T Consensus 193 -------------------------------------------------------------------------------- 192 (398)
T PRK10747 193 -------------------------------------------------------------------------------- 192 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH--------HHHHHHHHhcCHHHHHHHHHHHhhcccChhHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQN--------NIAAVYFERKEYDQCIEQYIQKIENRADFKLIA 318 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 318 (570)
++.++...|++++|++.+.+..+..+.++.... .+........+.+...+.++..-+..|++ +
T Consensus 193 ------l~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~---~ 263 (398)
T PRK10747 193 ------AEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQ---V 263 (398)
T ss_pred ------HHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCC---H
Confidence 445555679999999999999988776544322 11111222233344444444444555667 8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHH
Q psy3014 319 KALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAV 398 (570)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 398 (570)
.+...++..+...|+.++|...++++++ ..| ++......+.+ ..++.++++
T Consensus 264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~--------------------------~~~-~~~l~~l~~~l--~~~~~~~al 314 (398)
T PRK10747 264 ALQVAMAEHLIECDDHDTAQQIILDGLK--------------------------RQY-DERLVLLIPRL--KTNNPEQLE 314 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--------------------------cCC-CHHHHHHHhhc--cCCChHHHH
Confidence 8999999999999999999999999987 222 33333333333 459999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 399 KEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 399 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
..+++.++.+|+++..+..+|.++...|++++|.++|+++++..|++.. +..++.++.++|+.++|..+|++++.+.
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999998654 5689999999999999999999998764
No 49
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.89 E-value=1.2e-20 Score=172.75 Aligned_cols=216 Identities=12% Similarity=0.020 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
..+..++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|++ ..++.++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~l 138 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAYLNR 138 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
|.++...|++++|+..|++++. .+|+++... ....+....+++++|+..|.++
T Consensus 139 g~~l~~~g~~~eA~~~~~~al~--------------------------~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 139 GIALYYGGRYELAQDDLLAFYQ--------------------------DDPNDPYRA-LWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--------------------------hCCCCHHHH-HHHHHHHccCCHHHHHHHHHHH
Confidence 9999999999999999999999 677665321 1223345678999999999887
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHH-------HhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETC-------LKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 405 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-------l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
+...+... |. .+.++...|+...+ ..++.+ +++.|....+|+.+|.++..+|++++|+.+|+++++.+|
T Consensus 192 ~~~~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 192 YEKLDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HhhCCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 75543322 22 35666667776544 233333 355667788999999999999999999999999999996
Q ss_pred -CcHHHHHHHHHHHHHhc
Q psy3014 478 -SNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 478 -~~~~~~~~l~~~~~~~~ 494 (570)
++.+....+..+....+
T Consensus 268 ~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 268 YNFVEHRYALLELALLGQ 285 (296)
T ss_pred chHHHHHHHHHHHHHHHh
Confidence 77777766666655543
No 50
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.89 E-value=1.5e-20 Score=152.93 Aligned_cols=215 Identities=16% Similarity=0.123 Sum_probs=200.3
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
....+.+...+|.-|+..|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|++++.++|++ .++++
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~---GdVLN 107 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN---GDVLN 107 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc---cchhh
Confidence 346788999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
+.|..++.+|++++|...|++++... ..+..+.++.++|.|..+.|+++.|..+|+
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P------------------------~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADP------------------------AYGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCC------------------------CCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 99999999999999999999999733 345678899999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Q psy3014 403 EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 482 (570)
++++.+|+++.....++..++..|+|-.|..++++....-+-....+.....+-...|+-+.|-.+=.+.-...|..++.
T Consensus 164 raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 164 RALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999999999999999999999999999999998888888888888888899999999999988888999988776
Q ss_pred HH
Q psy3014 483 VE 484 (570)
Q Consensus 483 ~~ 484 (570)
..
T Consensus 244 q~ 245 (250)
T COG3063 244 QT 245 (250)
T ss_pred Hh
Confidence 54
No 51
>KOG1129|consensus
Probab=99.89 E-value=5.3e-22 Score=168.88 Aligned_cols=213 Identities=12% Similarity=0.064 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
+.+..++.+|.+..++..|+..|.+.++..|.+...+...+.++..++++++|.++|+.+++.+|.+ .++...+|.-
T Consensus 257 dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n---vEaiAcia~~ 333 (478)
T KOG1129|consen 257 DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN---VEAIACIAVG 333 (478)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc---ceeeeeeeec
Confidence 3445577778888999999999999999999999999999999999999999999999999999999 8899999999
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q psy3014 328 YKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 407 (570)
|+..++.+-|+.+|+++++ +...+++.+.++|.+++..++++-++..|++++..
T Consensus 334 yfY~~~PE~AlryYRRiLq--------------------------mG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 334 YFYDNNPEMALRYYRRILQ--------------------------MGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred cccCCChHHHHHHHHHHHH--------------------------hcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 9999999999999999999 78889999999999999999999999999999987
Q ss_pred CC--C-CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy3014 408 NP--D-DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484 (570)
Q Consensus 408 ~p--~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 484 (570)
.. + -.++|+++|.+....|++..|..+|+-++..+|++..++.++|.+-.+.|+.++|..++..|-.+.|+-.+...
T Consensus 388 at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~ 467 (478)
T KOG1129|consen 388 ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTT 467 (478)
T ss_pred ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccc
Confidence 43 2 46799999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHH
Q psy3014 485 GYRQC 489 (570)
Q Consensus 485 ~l~~~ 489 (570)
+++.+
T Consensus 468 Nl~~~ 472 (478)
T KOG1129|consen 468 NLQFM 472 (478)
T ss_pred ceeEE
Confidence 76544
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.89 E-value=4.9e-20 Score=177.51 Aligned_cols=295 Identities=11% Similarity=-0.039 Sum_probs=237.5
Q ss_pred hhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHH-HHHHHHHHHHHh
Q psy3014 48 FSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ-MKEAIKDVRNQE 126 (570)
Q Consensus 48 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~ 126 (570)
....|......|+++.|.+.+.++.+..|+....+...|.++..+|+++.|...+.++.+..|++.. +.
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~---------- 156 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVE---------- 156 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHH----------
Confidence 3556778889999999999999999999998888899999999999999999999999988887532 21
Q ss_pred hhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCC
Q psy3014 127 MNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDG 206 (570)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (570)
T Consensus 157 -------------------------------------------------------------------------------- 156 (409)
T TIGR00540 157 -------------------------------------------------------------------------------- 156 (409)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy3014 207 DAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNN 286 (570)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (570)
...+.++...|++++|...+++.++..|+++.++..
T Consensus 157 --------------------------------------------~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~l 192 (409)
T TIGR00540 157 --------------------------------------------IARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKL 192 (409)
T ss_pred --------------------------------------------HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 124677778999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhhcccChhHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Q psy3014 287 IAAVYFERKEYDQCIEQYIQKIENRADFKLIA-KALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365 (570)
Q Consensus 287 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 365 (570)
++.++...|++++|.+.+.+..+....++... ........-....+..+++...+.++....|.
T Consensus 193 l~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~--------------- 257 (409)
T TIGR00540 193 AEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR--------------- 257 (409)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH---------------
Confidence 99999999999999999999997744331111 11122222223334444445566665552111
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHhcChHHHHHHHHHHHhcCC
Q psy3014 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYY--SNRAACYTKLAAFDLGLKDCETCLKLDP 443 (570)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~~~p 443 (570)
..++++..+..++..+...|++++|...++++++..|++.... ..........++.+.+++.++++++..|
T Consensus 258 -------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 258 -------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred -------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 2235889999999999999999999999999999999987532 3333344456889999999999999999
Q ss_pred CCH--HHHHHHHHHHHhCCCHHHHHHHHH--HHHhhCCCcHHHHHHHHHHHHHhcCCHHH
Q psy3014 444 KFL--KGWIRKGKILQGMQQQSKAIDAYE--KALELDASNAEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 444 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~~~~~e~ 499 (570)
+++ ..+..+|+++.+.|++++|.++|+ ++++.+|++.. ...++.++.++|+..++
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEA 389 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence 999 888999999999999999999999 68889998776 55999999999996654
No 53
>KOG1156|consensus
Probab=99.89 E-value=5.1e-19 Score=164.56 Aligned_cols=389 Identities=12% Similarity=0.104 Sum_probs=283.7
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
.|+.-..++..+.-.+..++|...++..+.+++..|.+++.+...|..+..+|+-++|......++..++.....|..+|
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ 166 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (570)
.++....+|++|+++|+.|+.++|+|..++..++.+..+..+.....+...
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~----------------------------- 133 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRN----------------------------- 133 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHH-----------------------------
Confidence 999999999999999999999999999999999888777322211111000
Q ss_pred HHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHH
Q psy3014 167 MIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRS 246 (570)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (570)
..+...|..
T Consensus 134 -----------------------------------------------------------------------~LLql~~~~ 142 (700)
T KOG1156|consen 134 -----------------------------------------------------------------------QLLQLRPSQ 142 (700)
T ss_pred -----------------------------------------------------------------------HHHHhhhhh
Confidence 111223456
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFD---PTD-----ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIA 318 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 318 (570)
-..|...+..+...|++..|....+...+.. |+. ..+......+....|..++|.+.+..--..--+. .
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk---l 219 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDK---L 219 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHH---H
Confidence 6778888888889999999998888877665 332 2344455666777788888877766544333333 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHH-----HHHHHH---HHHHHH-HHHHHHhcCChhhHHHHHHHHHHH-
Q psy3014 319 KALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE-----IRTLIS---EMEKKI-KEEEKKAYIDPVKAEEAKERGNEL- 388 (570)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~---~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~- 388 (570)
......+.++..++++++|...|...+...|+.- ....++ .-.+++ ..|....+..|.. .....++...
T Consensus 220 a~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~-e~p~Rlplsvl 298 (700)
T KOG1156|consen 220 AFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH-ECPRRLPLSVL 298 (700)
T ss_pred HHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc-ccchhccHHHh
Confidence 5666778899999999999999999998888732 112222 122222 3333333322221 0000111000
Q ss_pred ----------------HHCC-------------CHHHHHHHHHHHH-------hcC------------CCC--HHHHHHH
Q psy3014 389 ----------------FKNG-------------KYADAVKEYTEAI-------NRN------------PDD--PKYYSNR 418 (570)
Q Consensus 389 ----------------~~~~-------------~~~~A~~~~~~al-------~~~------------p~~--~~~~~~l 418 (570)
+..| +..+. ..+++.+ .-. |.. .+.++.+
T Consensus 299 ~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~l 377 (700)
T KOG1156|consen 299 NGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFL 377 (700)
T ss_pred CcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHH
Confidence 1111 11111 1222221 110 212 2456778
Q ss_pred HHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHH
Q psy3014 419 AACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 419 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e 498 (570)
+..+...|+++.|..+++.|+...|+.++.+...|+++...|+.++|..++..+-++|-.|.-+-...+.-..+.++.++
T Consensus 378 aqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~e 457 (700)
T KOG1156|consen 378 AQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEE 457 (700)
T ss_pred HHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHH
Confidence 99999999999999999999999999999999999999999999999999999999997777776677777777777655
Q ss_pred HH
Q psy3014 499 EV 500 (570)
Q Consensus 499 ~~ 500 (570)
+.
T Consensus 458 A~ 459 (700)
T KOG1156|consen 458 AE 459 (700)
T ss_pred HH
Confidence 43
No 54
>KOG1125|consensus
Probab=99.89 E-value=1.7e-21 Score=179.03 Aligned_cols=261 Identities=15% Similarity=0.225 Sum_probs=183.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccC
Q psy3014 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGR 94 (570)
Q Consensus 15 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 94 (570)
+..|..+++.|+..+|+-+|+.+++.+|.+.++|..||.+....++-..|+..+++|++++|++..++..||.+|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhC
Q psy3014 95 YKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKD 174 (570)
Q Consensus 95 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (570)
-.+|+.++.+-+...|........ ... ..+.
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a---------~~~---~~~~------------------------------------- 399 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSA---------GEN---EDFE------------------------------------- 399 (579)
T ss_pred HHHHHHHHHHHHHhCccchhcccc---------Ccc---cccc-------------------------------------
Confidence 999999999999887754321100 000 0000
Q ss_pred chhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHH
Q psy3014 175 PSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELG 254 (570)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 254 (570)
. . +
T Consensus 400 --------------------------------------------------~------~-----~---------------- 402 (579)
T KOG1125|consen 400 --------------------------------------------------N------T-----K---------------- 402 (579)
T ss_pred --------------------------------------------------C------C-----c----------------
Confidence 0 0 0
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC
Q psy3014 255 NEAYKKKNFEEALAHYNKAVEFDP--TDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME 332 (570)
Q Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 332 (570)
.......+..-.+.|-.+....| .+++++..||.+|...|+|++|+.+|+.++...|++ ...|..||-++....
T Consensus 403 -s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd---~~lWNRLGAtLAN~~ 478 (579)
T KOG1125|consen 403 -SFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND---YLLWNRLGATLANGN 478 (579)
T ss_pred -CCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch---HHHHHHhhHHhcCCc
Confidence 00001112233445555555555 566777777777777777777777777777777776 667777777777666
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD- 411 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~- 411 (570)
+..+|+..|.+|++ +.|....+++++|..++..|.|.+|+++|-.+|.+.+..
T Consensus 479 ~s~EAIsAY~rALq--------------------------LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 479 RSEEAISAYNRALQ--------------------------LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred ccHHHHHHHHHHHh--------------------------cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 77777777777766 666666677777777777777777777777766654431
Q ss_pred ---------HHHHHHHHHHHHHhcChHHH
Q psy3014 412 ---------PKYYSNRAACYTKLAAFDLG 431 (570)
Q Consensus 412 ---------~~~~~~la~~~~~~~~~~~A 431 (570)
..+|-.|=.++..+++.+.+
T Consensus 533 ~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 533 NHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred ccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 13444444455555555433
No 55
>KOG1127|consensus
Probab=99.89 E-value=6.7e-21 Score=184.59 Aligned_cols=254 Identities=13% Similarity=0.079 Sum_probs=186.9
Q ss_pred chhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh----hH
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF----KL 316 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~~ 316 (570)
..+|.+...|..+|.+|...|++..|++.|.++..++|.+....+..+.+....|.|.+|+..+...+...... ..
T Consensus 590 R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~g 669 (1238)
T KOG1127|consen 590 RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNG 669 (1238)
T ss_pred cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34557777788888888888888888888888888888887777777888888888888888777777543322 23
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHH----------------HHHHH-----------------HHHH--
Q psy3014 317 IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE----------------IRTLI-----------------SEME-- 361 (570)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~-----------------~~~~-- 361 (570)
.++++.+.+..+...|-...|..+++++++.....- ..... ++++
T Consensus 670 LaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~ 749 (1238)
T KOG1127|consen 670 LAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKT 749 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 355666666666666666666666666655321100 00000 0000
Q ss_pred ----------HHHHHHHHHhcCChhhHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy3014 362 ----------KKIKEEEKKAYIDPVKAEEAKERGNELFK--------NGKYADAVKEYTEAINRNPDDPKYYSNRAACYT 423 (570)
Q Consensus 362 ----------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 423 (570)
-+.+.+-..+.. ...+..|+++|..|++ +.+...|+.++.+++++..++...|..||.+ .
T Consensus 750 ~~l~~~d~l~Lg~~c~~~hlsl-~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-s 827 (1238)
T KOG1127|consen 750 GALKKNDLLFLGYECGIAHLSL-AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-S 827 (1238)
T ss_pred ccCcchhHHHHHHHHhhHHHHH-hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-h
Confidence 001111111100 1135678888888776 2344589999999999999999999999998 7
Q ss_pred HhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCC
Q psy3014 424 KLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSN 496 (570)
Q Consensus 424 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 496 (570)
..|++.-|..+|-+.+...|.+...|.++|.++.+..+++.|...|.++..++|.|...|.+-+.+...+|+.
T Consensus 828 g~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~i 900 (1238)
T KOG1127|consen 828 GIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRI 900 (1238)
T ss_pred ccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHH
Confidence 7799999999999999999999999999999999999999999999999999999999999999999999973
No 56
>KOG0495|consensus
Probab=99.88 E-value=4.5e-19 Score=164.74 Aligned_cols=259 Identities=13% Similarity=0.008 Sum_probs=157.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME 332 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 332 (570)
.+..-...|..+.-..++++++...|.....|...+..+...|+...|..++.++++.+|++ .++|+....+.....
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pns---eeiwlaavKle~en~ 632 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNS---EEIWLAAVKLEFEND 632 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCc---HHHHHHHHHHhhccc
Confidence 33333344555555555555555555555555555555555555555555555555555555 555555555555555
Q ss_pred CHHHHHHHHHHHhcccCCHH-------HHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q psy3014 333 DWKNAKVYFEKSMSEHRTPE-------IRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAI 405 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 405 (570)
+++.|...|.++....++.. +...+++.++|+..++.+++..|.....|..+|+++...++.+.|...|...+
T Consensus 633 e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~ 712 (913)
T KOG0495|consen 633 ELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGT 712 (913)
T ss_pred cHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 55555555555555554422 33444555555555555555666667777777777777777777777777777
Q ss_pred hcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc------
Q psy3014 406 NRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN------ 479 (570)
Q Consensus 406 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------ 479 (570)
+..|+.+..|..++.+-.+.|+...|...++++.-.+|.+...|.....+-.+.|+.++|...+.+||+-.|++
T Consensus 713 k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaE 792 (913)
T KOG0495|consen 713 KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAE 792 (913)
T ss_pred ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHH
Confidence 77777777777777777666777777777777766677776666666666666777777776666666665554
Q ss_pred ------------------------HHHHHHHHHHHHHhcCCH--HHH-HHHHcCCchHHHhh
Q psy3014 480 ------------------------AEAVEGYRQCSIAVSSNP--EEV-RKRAMGDPEVQQIL 514 (570)
Q Consensus 480 ------------------------~~~~~~l~~~~~~~~~~~--e~~-~~~~~~~p~~~~~~ 514 (570)
+.++...+.+.....+.. ... .+.+..+|++-..+
T Consensus 793 aI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w 854 (913)
T KOG0495|consen 793 AIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW 854 (913)
T ss_pred HHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence 444556666665555422 222 34456688876655
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.88 E-value=5.1e-20 Score=165.56 Aligned_cols=206 Identities=17% Similarity=0.196 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
..+..+..+|..+...|++++|+..+++++..+|++..++..+|.++...|++++|+..++++++..|.+ ..++..+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~ 105 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN---GDVLNNY 105 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999999998 8899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
|.++...|++++|+..+++++... ..+.....+..+|.++...|++++|...+.++
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDP------------------------LYPQPARSLENAGLCALKAGDFDKAEKYLTRA 161 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcc------------------------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999998731 23455677888999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 405 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
+...|+++.++..+|.++...|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 162 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 162 LQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999999999999999999999999999999999898999999999999999999999999888877654
No 58
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.87 E-value=5.8e-20 Score=168.24 Aligned_cols=92 Identities=17% Similarity=0.281 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHHHccCC---C-CcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHH
Q psy3014 24 ANNFIEAIEAYSEAIKLDG---T-NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESI 99 (570)
Q Consensus 24 ~~~~~~A~~~~~~al~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 99 (570)
.+..+.++..+.+++...| . .+..|+.+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3455667777777775333 2 24557777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhccCCCcHHH
Q psy3014 100 STYEEGLKLDPNNEQM 115 (570)
Q Consensus 100 ~~~~~al~~~p~~~~~ 115 (570)
..|+++++++|++..+
T Consensus 119 ~~~~~Al~l~P~~~~a 134 (296)
T PRK11189 119 EAFDSVLELDPTYNYA 134 (296)
T ss_pred HHHHHHHHhCCCCHHH
Confidence 7777777777765443
No 59
>KOG1174|consensus
Probab=99.87 E-value=9.2e-20 Score=160.22 Aligned_cols=304 Identities=13% Similarity=0.084 Sum_probs=231.2
Q ss_pred CHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHh
Q psy3014 26 NFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEG 105 (570)
Q Consensus 26 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 105 (570)
-+.-+..++-.-...-|+|...+..+|.|++..|++.+|+..|+++..++|.+..+.-..|.++...|++++-.......
T Consensus 213 s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~L 292 (564)
T KOG1174|consen 213 SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYL 292 (564)
T ss_pred chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHH
Confidence 34444445555556667777777777777777777777777777777777777777777777777777777766666666
Q ss_pred hccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCc
Q psy3014 106 LKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDP 185 (570)
Q Consensus 106 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (570)
+.++.....-|..-+.+... .+.+..++....
T Consensus 293 f~~~~~ta~~wfV~~~~l~~-----------------------------------~K~~~rAL~~~e------------- 324 (564)
T KOG1174|consen 293 FAKVKYTASHWFVHAQLLYD-----------------------------------EKKFERALNFVE------------- 324 (564)
T ss_pred Hhhhhcchhhhhhhhhhhhh-----------------------------------hhhHHHHHHHHH-------------
Confidence 66664444333332222221 011111111000
Q ss_pred cHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHH
Q psy3014 186 RMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEE 265 (570)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 265 (570)
+.+..++....++...|..+...|+.++
T Consensus 325 ----------------------------------------------------K~I~~~~r~~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 325 ----------------------------------------------------KCIDSEPRNHEALILKGRLLIALERHTQ 352 (564)
T ss_pred ----------------------------------------------------HHhccCcccchHHHhccHHHHhccchHH
Confidence 0111123455667778999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHH-HH-HHHcCCHHHHHHHHHH
Q psy3014 266 ALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIG-NC-YKKMEDWKNAKVYFEK 343 (570)
Q Consensus 266 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~-~~-~~~~~~~~~A~~~~~~ 343 (570)
|+-.|+.|..+.|...+.|..+-.+|...|++.+|.-.-..+++..|.+ +.++..+| .+ ...-.--++|.+++++
T Consensus 353 A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s---A~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 353 AVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS---ARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc---hhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998 88888886 33 3344456788888888
Q ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy3014 344 SMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYT 423 (570)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 423 (570)
++. ..|....+...++.++...|.+.+++..+++.+...|+ ...+..+|.++.
T Consensus 430 ~L~--------------------------~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 430 SLK--------------------------INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMR 482 (564)
T ss_pred hhc--------------------------cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHH
Confidence 888 89999999999999999999999999999999998875 567899999999
Q ss_pred HhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q psy3014 424 KLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM 459 (570)
Q Consensus 424 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 459 (570)
..+.+.+|+++|..|+.++|++..+.-.+-.+-...
T Consensus 483 A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred HhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence 999999999999999999999988876665544443
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.87 E-value=9.7e-19 Score=167.50 Aligned_cols=288 Identities=11% Similarity=0.030 Sum_probs=222.9
Q ss_pred hhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHH-HHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q psy3014 48 FSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRK-GSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 126 (570)
Q Consensus 48 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 126 (570)
.+..|...+..|+|++|.+...++-...+. +..++.+ +.+....|+++.|...+.++.+.+|++.....
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~--------- 156 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVE--------- 156 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHH---------
Confidence 345667777789999999888876665433 4444444 66669999999999999999998887643221
Q ss_pred hhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCC
Q psy3014 127 MNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDG 206 (570)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (570)
T Consensus 157 -------------------------------------------------------------------------------- 156 (398)
T PRK10747 157 -------------------------------------------------------------------------------- 156 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy3014 207 DAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNN 286 (570)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (570)
...+.++...|++++|+..++++.+.+|+++.++..
T Consensus 157 --------------------------------------------l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~l 192 (398)
T PRK10747 157 --------------------------------------------ITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRL 192 (398)
T ss_pred --------------------------------------------HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 123677778999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhhcccChhHHHH-----HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHH
Q psy3014 287 IAAVYFERKEYDQCIEQYIQKIENRADFKLIAK-----ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEME 361 (570)
Q Consensus 287 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 361 (570)
++.+|...|++++|+..+.+..+..+.++.... ++..+........+.+.....++....
T Consensus 193 l~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~--------------- 257 (398)
T PRK10747 193 AEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR--------------- 257 (398)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH---------------
Confidence 999999999999999999998876655421111 222221111222222222333333222
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Q psy3014 362 KKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441 (570)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 441 (570)
..|+++.+...++..+...|+.++|...++++++. |.++......+.+ ..+++++++..+++.++.
T Consensus 258 -----------~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 258 -----------KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred -----------HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhh
Confidence 45778999999999999999999999999999994 5566655555554 449999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHH
Q psy3014 442 DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 442 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~ 499 (570)
+|+++..+..+|.++...|++++|.++|+++++..|++.. +..++.++.++|+..++
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEA 380 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999999755 55899999999996654
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.85 E-value=4.1e-19 Score=144.58 Aligned_cols=189 Identities=16% Similarity=0.230 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHH
Q psy3014 281 ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360 (570)
Q Consensus 281 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 360 (570)
..+...+|.-|+..|++..|...++++++.+|++ ..+|..++.+|...|+.+.|.+.|+++++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~---~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls-------------- 97 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY---YLAHLVRAHYYQKLGENDLADESYRKALS-------------- 97 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChhhHHHHHHHHHh--------------
Confidence 3577889999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcChHHHHHHHHHH
Q psy3014 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR--NPDDPKYYSNRAACYTKLAAFDLGLKDCETC 438 (570)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 438 (570)
++|++.+++++.|..+..+|++++|...|++++.. .|..+.++.++|.|..+.|+++.|.++|+++
T Consensus 98 ------------l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra 165 (250)
T COG3063 98 ------------LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA 165 (250)
T ss_pred ------------cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence 99999999999999999999999999999999974 4556789999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHH
Q psy3014 439 LKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 439 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e 498 (570)
++++|+.+.....++..++..|++..|..++++....-+-..+.+....++-..+|+.+.
T Consensus 166 L~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~ 225 (250)
T COG3063 166 LELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAA 225 (250)
T ss_pred HHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999999999999999999999888888888888888899998543
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.85 E-value=2.7e-19 Score=160.81 Aligned_cols=204 Identities=17% Similarity=0.215 Sum_probs=185.4
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
...+..++.+|..++..|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++...|.+..++..+|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQM 167 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (570)
++...|++++|+..|++++...+..
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~------------------------------------------------------- 132 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYP------------------------------------------------------- 132 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccc-------------------------------------------------------
Confidence 9999999999999999998642210
Q ss_pred HHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHH
Q psy3014 168 IKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSA 247 (570)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (570)
...
T Consensus 133 -----------------------------------------------------------------------------~~~ 135 (234)
T TIGR02521 133 -----------------------------------------------------------------------------QPA 135 (234)
T ss_pred -----------------------------------------------------------------------------cch
Confidence 123
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
..+..+|.++...|++++|...+.+++..+|.++..+..+|.++...|++++|+..+++++...|.. ...+..++.+
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~ 212 (234)
T TIGR02521 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT---AESLWLGIRI 212 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Confidence 3455689999999999999999999999999999999999999999999999999999999988777 7778889999
Q ss_pred HHHcCCHHHHHHHHHHHhc
Q psy3014 328 YKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~ 346 (570)
+...|+.++|..+.+.+..
T Consensus 213 ~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 213 ARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHhhHHHHHHHHHHHHh
Confidence 9999999999998877655
No 63
>PLN02789 farnesyltranstransferase
Probab=99.84 E-value=1.4e-18 Score=157.95 Aligned_cols=223 Identities=10% Similarity=0.065 Sum_probs=201.6
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHhhcccChhHHHHHH
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK-EYDQCIEQYIQKIENRADFKLIAKAL 321 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~ 321 (570)
.++..+++-.+-.++...+++++|+..+.+++.++|++..+|..++.++..+| ++++++..+.++++.+|++ ..+|
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn---yqaW 109 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN---YQIW 109 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc---hHHh
Confidence 45666777666677888999999999999999999999999999999999998 6899999999999999999 8999
Q ss_pred HHHHHHHHHcCCH--HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHH
Q psy3014 322 QRIGNCYKKMEDW--KNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVK 399 (570)
Q Consensus 322 ~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 399 (570)
...+.++...|.. ++++.++++++. .+|.+..+|..+|.++...|++++|++
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~--------------------------~dpkNy~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILS--------------------------LDAKNYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHH--------------------------hCcccHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999888874 677888888887 999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHh---cCh----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----CCCHHHHHHH
Q psy3014 400 EYTEAINRNPDDPKYYSNRAACYTKL---AAF----DLGLKDCETCLKLDPKFLKGWIRKGKILQG----MQQQSKAIDA 468 (570)
Q Consensus 400 ~~~~al~~~p~~~~~~~~la~~~~~~---~~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~ 468 (570)
++.++++.+|.+..+|+.++.+.... |.+ ++++.+..+++..+|++..+|..++.++.. +++..+|.+.
T Consensus 164 ~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 164 YCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 99999999999999999999998876 333 578888999999999999999999999988 4567889999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 469 YEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 469 ~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
+.+++..+|+++.++..|+.++....
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~ 269 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGL 269 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhh
Confidence 99999999999999999999998643
No 64
>KOG1156|consensus
Probab=99.84 E-value=7.5e-17 Score=150.35 Aligned_cols=411 Identities=14% Similarity=0.088 Sum_probs=261.2
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHh
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (570)
+.+.|+..+.+-.+|..+...|+-++|..+...++..++.+...|.-+|.++...++|++|+++|+.|+.+.|+|...|.
T Consensus 34 L~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilr 113 (700)
T KOG1156|consen 34 LKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILR 113 (700)
T ss_pred HHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 44667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChH
Q psy3014 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS 163 (570)
Q Consensus 84 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (570)
-++.+..++|+++.....-.+.++..|.....|..++..+...++...+...+.... .... .......
T Consensus 114 DlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~----------~t~~--~~~s~~~ 181 (700)
T KOG1156|consen 114 DLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFE----------KTQN--TSPSKED 181 (700)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------Hhhc--cCCCHHH
Confidence 999999999999999999999999999999999998888776443332221111110 0000 0000011
Q ss_pred HHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchh
Q psy3014 164 YVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDE 243 (570)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (570)
+......+..+.. ..........+..+.... ...
T Consensus 182 ~e~se~~Ly~n~i----~~E~g~~q~ale~L~~~e------------------------------------------~~i 215 (700)
T KOG1156|consen 182 YEHSELLLYQNQI----LIEAGSLQKALEHLLDNE------------------------------------------KQI 215 (700)
T ss_pred HHHHHHHHHHHHH----HHHcccHHHHHHHHHhhh------------------------------------------hHH
Confidence 1111100000000 000011111111111100 001
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH-HHHHHHhhcccChhHHHHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCI-EQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~~l~~~~~~~~~~~~~~ 322 (570)
-+........|.++++.+++++|...|...+..+|++...+..+-.++..-.+--+++ ..|...-+..|. ..+..
T Consensus 216 ~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r----~e~p~ 291 (700)
T KOG1156|consen 216 VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR----HECPR 291 (700)
T ss_pred HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc----cccch
Confidence 1233334445566666666666666666666666666666555555554222222333 333333333332 23333
Q ss_pred HHHHHHHHcCCHHHHHH-HHHHHhcccCC---HHHHHHH------HHHHHHHHHHHHHhcCC------------hh--hH
Q psy3014 323 RIGNCYKKMEDWKNAKV-YFEKSMSEHRT---PEIRTLI------SEMEKKIKEEEKKAYID------------PV--KA 378 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~-~~~~~~~~~~~---~~~~~~~------~~~~~a~~~~~~~~~~~------------~~--~~ 378 (570)
.++.....-.++..... ++...++..-. .++.... .-+++-+..+...+... |. -.
T Consensus 292 Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttll 371 (700)
T KOG1156|consen 292 RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLL 371 (700)
T ss_pred hccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHH
Confidence 33333222222222222 22222222100 0000000 11122222222222211 22 24
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG 458 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 458 (570)
..++.++..+...|+++.|..+++.|+...|.-++.+...|.++...|++++|..+++.+-++|-.+...-...|....+
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999988777666678999999
Q ss_pred CCCHHHHHHHHHHHHhhC
Q psy3014 459 MQQQSKAIDAYEKALELD 476 (570)
Q Consensus 459 ~g~~~~A~~~~~~al~~~ 476 (570)
.++.++|.+...+.-.-.
T Consensus 452 An~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTREG 469 (700)
T ss_pred ccccHHHHHHHHHhhhcc
Confidence 999999998887765543
No 65
>KOG1127|consensus
Probab=99.83 E-value=2.9e-18 Score=166.58 Aligned_cols=373 Identities=13% Similarity=0.061 Sum_probs=279.2
Q ss_pred hhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCC--Chh
Q psy3014 3 NLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD--WPK 80 (570)
Q Consensus 3 ~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~ 80 (570)
.++..+.-+.++-.+|..|...-+...|..+|++|.++||.+..+.-..+..|....+++.|...+-.+-+..|- ...
T Consensus 484 alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~ 563 (1238)
T KOG1127|consen 484 ALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKE 563 (1238)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHh
Confidence 344555667788888888888888888888999999888888888888888888888888888887776666664 345
Q ss_pred HHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCC
Q psy3014 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS 160 (570)
Q Consensus 81 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (570)
.|..+|..|...++...|+..|+.+++.+|.+...|.+++..|...+....+...+.++
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA--------------------- 622 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKA--------------------- 622 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhh---------------------
Confidence 67779999999999999999999999999999999999999998844443333322221
Q ss_pred ChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q psy3014 161 DPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNL 240 (570)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (570)
.
T Consensus 623 -------------------------------------------------------------------------------s 623 (1238)
T KOG1127|consen 623 -------------------------------------------------------------------------------S 623 (1238)
T ss_pred -------------------------------------------------------------------------------H
Confidence 1
Q ss_pred chhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-------HHHhcCHHHHHHHHHHHhhcccC
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAV-------YFERKEYDQCIEQYIQKIENRAD 313 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-------~~~~~~~~~A~~~~~~~l~~~~~ 313 (570)
..+|.+.-..+..+.+....|+|.+|+..+...+............+|.+ +...|=..+|...+++.++....
T Consensus 624 ~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 624 LLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 22346666777888999999999999999999998766555444455444 45567778888899888876543
Q ss_pred h---h--HHHHHHHHHHHHHH---HcC--------------------CH------HHHHHHHHHHhcccCCHH-------
Q psy3014 314 F---K--LIAKALQRIGNCYK---KME--------------------DW------KNAKVYFEKSMSEHRTPE------- 352 (570)
Q Consensus 314 ~---~--~~~~~~~~l~~~~~---~~~--------------------~~------~~A~~~~~~~~~~~~~~~------- 352 (570)
. . .....|..+|..+. ... .. --+.+++-..++....+.
T Consensus 704 ~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGi 783 (1238)
T KOG1127|consen 704 SLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGI 783 (1238)
T ss_pred HHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhH
Confidence 2 0 01112222222111 111 00 011122211111111100
Q ss_pred -HH-------HHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy3014 353 -IR-------TLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK 424 (570)
Q Consensus 353 -~~-------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 424 (570)
.+ ....+...|+..+.+++....++...|..+|.+ ...|++.-|.-+|-+.+...|.....|.++|.++..
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEe
Confidence 00 111234688999999999999999999999998 666999999999999999999999999999999999
Q ss_pred hcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 425 LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 425 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
..+++-|...|.++..++|.+...|...+.+....|+.-++...|....++.
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~ 914 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELC 914 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhh
Confidence 9999999999999999999999999999999999999999999998855544
No 66
>PLN02789 farnesyltranstransferase
Probab=99.83 E-value=4.9e-18 Score=154.49 Aligned_cols=194 Identities=13% Similarity=0.071 Sum_probs=134.0
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH--HHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHH
Q psy3014 262 NFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEY--DQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKV 339 (570)
Q Consensus 262 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 339 (570)
++++++..++++++.+|++..+|..++.++...|+. ++++.++.++++.+|.+ ..+|..++.++...|++++++.
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN---y~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN---YHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhhhHHHHHH
Confidence 456666666666666666666666666666666653 55666666666666666 6666666666666666666666
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC---CC----HHHHHHHHHHHHhcCCCCH
Q psy3014 340 YFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKN---GK----YADAVKEYTEAINRNPDDP 412 (570)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~A~~~~~~al~~~p~~~ 412 (570)
++.++++ .+|.+..+|..++.++... |. .++++.+..+++..+|++.
T Consensus 164 ~~~~~I~--------------------------~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~ 217 (320)
T PLN02789 164 YCHQLLE--------------------------EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNE 217 (320)
T ss_pred HHHHHHH--------------------------HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCc
Confidence 6666666 6666666666666666554 22 2467778888888888888
Q ss_pred HHHHHHHHHHHH----hcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC------------------CHHHHHHHHH
Q psy3014 413 KYYSNRAACYTK----LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQ------------------QQSKAIDAYE 470 (570)
Q Consensus 413 ~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~ 470 (570)
.+|..++.++.. +++..+|+..+.+++...|+++.++..++.+|.... ..++|...++
T Consensus 218 SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 297 (320)
T PLN02789 218 SPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCS 297 (320)
T ss_pred CHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHH
Confidence 888888888877 455677888888888888888888888888887532 2355666666
Q ss_pred HHHhhCCCcHHHHH
Q psy3014 471 KALELDASNAEAVE 484 (570)
Q Consensus 471 ~al~~~p~~~~~~~ 484 (570)
..-+.||=-...|.
T Consensus 298 ~l~~~d~ir~~yw~ 311 (320)
T PLN02789 298 ELEVADPMRRNYWA 311 (320)
T ss_pred HHHhhCcHHHHHHH
Confidence 66566665544443
No 67
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.83 E-value=4.1e-17 Score=139.32 Aligned_cols=278 Identities=13% Similarity=0.141 Sum_probs=237.5
Q ss_pred hchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q psy3014 49 SNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMN 128 (570)
Q Consensus 49 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 128 (570)
+..|.-++-.++.++|++.|-..++.+|...++++.+|.++...|..+.|+..-+..++ .|+-+..
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~------------- 104 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFE------------- 104 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchH-------------
Confidence 45677788889999999999999999999999999999999999999999997766554 4543322
Q ss_pred ccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCC
Q psy3014 129 DMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDA 208 (570)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (570)
T Consensus 105 -------------------------------------------------------------------------------- 104 (389)
T COG2956 105 -------------------------------------------------------------------------------- 104 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 209 EEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIA 288 (570)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 288 (570)
....+...+|.-|+..|-++.|...|........--..+...+.
T Consensus 105 ------------------------------------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl 148 (389)
T COG2956 105 ------------------------------------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLL 148 (389)
T ss_pred ------------------------------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 23455667999999999999999999999887666678999999
Q ss_pred HHHHHhcCHHHHHHHHHHHhhcccCh--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Q psy3014 289 AVYFERKEYDQCIEQYIQKIENRADF--KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKE 366 (570)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 366 (570)
.+|....+|++|++.-++..+..+.. ..++..+..++..+....+.+.|...+.++++
T Consensus 149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq-------------------- 208 (389)
T COG2956 149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ-------------------- 208 (389)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh--------------------
Confidence 99999999999999999998887654 45678888889888889999999999999998
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC
Q psy3014 367 EEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD-PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF 445 (570)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 445 (570)
.+|....+-..+|.+....|+|+.|++.++.+++.+|.. +.+...+..||.++|+.++.+..+.++.+..+..
T Consensus 209 ------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 209 ------ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred ------hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 899999999999999999999999999999999999985 6688889999999999999999999999988764
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 446 LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
.+-..++..-....-.+.|..++.+-+...|+-...+
T Consensus 283 -~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~ 319 (389)
T COG2956 283 -DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFH 319 (389)
T ss_pred -cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHH
Confidence 4555667777777778889999999999999744433
No 68
>KOG4162|consensus
Probab=99.83 E-value=8.5e-17 Score=153.03 Aligned_cols=408 Identities=16% Similarity=0.143 Sum_probs=302.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKL-----DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
..+.....++.-..+.++++-..-..+.. -.+++.+|-.+.......|+++.+.+.|++++...-...+.|+.++
T Consensus 285 ~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~a 364 (799)
T KOG4162|consen 285 ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLA 364 (799)
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHH
Confidence 34444455555566666766654444332 2356778888999999999999999999999988888889999999
Q ss_pred HHHhhccCHHHHHHHHHHhhccC--CCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLD--PNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY 164 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (570)
.++...|.-..|+...+..+... |++.......+.++....+..
T Consensus 365 ls~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~---------------------------------- 410 (799)
T KOG4162|consen 365 LSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLV---------------------------------- 410 (799)
T ss_pred HHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhh----------------------------------
Confidence 99999999999999999999998 777776666665554411100
Q ss_pred HHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhH
Q psy3014 165 VQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQ 244 (570)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (570)
.+.+.-..+ .++ .. ......
T Consensus 411 eegldYA~k-------ai~---------~~--------------------------------------------~~~~~~ 430 (799)
T KOG4162|consen 411 EEGLDYAQK-------AIS---------LL--------------------------------------------GGQRSH 430 (799)
T ss_pred hhHHHHHHH-------HHH---------Hh--------------------------------------------hhhhhh
Confidence 000000000 000 00 000111
Q ss_pred HHHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccC
Q psy3014 245 RSAKKEKELGNEAYKK-----------KNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD 313 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 313 (570)
-.+..+..+|.+|..+ ....+++..++++++.+|+|+.+.+.++.-|...++.+.|.....++++.++.
T Consensus 431 l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~ 510 (799)
T KOG4162|consen 431 LKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRG 510 (799)
T ss_pred hhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC
Confidence 3567778888887543 34678999999999999999999999999999999999999999999999554
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCH--------HHHHHHHHHHHHHHHHHHHhcCChh---------
Q psy3014 314 FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTP--------EIRTLISEMEKKIKEEEKKAYIDPV--------- 376 (570)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~--------- 376 (570)
+. +.+|..++.++...+++.+|+...+.++...+.. .+...+++.++++..+...+..-..
T Consensus 511 ~~--~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~ 588 (799)
T KOG4162|consen 511 DS--AKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD 588 (799)
T ss_pred cc--HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 32 8999999999999999999999999999977662 2334456666666665554432221
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------CCCC-----HHHHHHHHHHHHHhcChHH
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINR---------------------NPDD-----PKYYSNRAACYTKLAAFDL 430 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---------------------~p~~-----~~~~~~la~~~~~~~~~~~ 430 (570)
........+.+....++..+|++.+..+... .|.. ...|...|..+...++.++
T Consensus 589 ~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~ 668 (799)
T KOG4162|consen 589 EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDE 668 (799)
T ss_pred hhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchH
Confidence 1112222333334445556666665555422 1121 2478899999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCH--HH---HHHHHc
Q psy3014 431 GLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNP--EE---VRKRAM 505 (570)
Q Consensus 431 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--e~---~~~~~~ 505 (570)
|..++.++-.++|..+..|+..|.++...|++.+|.+.|..|+.++|+++.+...++.++.+.|+.. +. ....++
T Consensus 669 a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 669 ARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999832 22 346667
Q ss_pred CCchHHHhhc
Q psy3014 506 GDPEVQQILR 515 (570)
Q Consensus 506 ~~p~~~~~~~ 515 (570)
-||.+.+.|.
T Consensus 749 ~dp~n~eaW~ 758 (799)
T KOG4162|consen 749 LDPLNHEAWY 758 (799)
T ss_pred hCCCCHHHHH
Confidence 7999888886
No 69
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.82 E-value=2.6e-17 Score=170.65 Aligned_cols=413 Identities=9% Similarity=-0.010 Sum_probs=292.5
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKL--DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
.+...+..+...+...++++.|...+..+.+. .| +...+..+..+|.+.|++++|.+.|++..+ | +...|..+.
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li 196 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTII 196 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHH
Confidence 46677888888899999999999999988764 45 467888999999999999999999999864 3 567789999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCc-HHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNN-EQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYV 165 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (570)
..|.+.|++++|+..|++..+..+.. ...+..+.......+....+........ .....+. ...+.
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~-------~~g~~~d------~~~~n 263 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL-------KTGVVGD------TFVSC 263 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHH-------HhCCCcc------ceeHH
Confidence 99999999999999999998754322 2222222222221111111000000000 0000000 00000
Q ss_pred HHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHH
Q psy3014 166 QMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQR 245 (570)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (570)
..+..+ ............+.... +.
T Consensus 264 ~Li~~y----------~k~g~~~~A~~vf~~m~---------------------------------------------~~ 288 (697)
T PLN03081 264 ALIDMY----------SKCGDIEDARCVFDGMP---------------------------------------------EK 288 (697)
T ss_pred HHHHHH----------HHCCCHHHHHHHHHhCC---------------------------------------------CC
Confidence 011111 11111111111111100 02
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc-cChhHHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFD-PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR-ADFKLIAKALQR 323 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~ 323 (570)
+..+|..+...|.+.|++++|+..|++..... .-+...+..+...+.+.|++++|.+.+..+++.. +.+ ..++..
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d---~~~~~~ 365 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD---IVANTA 365 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC---eeehHH
Confidence 35578888999999999999999999987653 2245678888888999999999999999988764 333 677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCC-----HHHHHHHHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHCCCHHH
Q psy3014 324 IGNCYKKMEDWKNAKVYFEKSMSEHRT-----PEIRTLISEMEKKIKEEEKKAY--IDPVKAEEAKERGNELFKNGKYAD 396 (570)
Q Consensus 324 l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 396 (570)
+...|.+.|+.++|...|++....... ...+...|+.++|++.+++... ..|+ ..++..+...+.+.|..++
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~ 444 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQ 444 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHH
Confidence 999999999999999999987653221 1234455778899999988765 3343 5567778888999999999
Q ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 397 AVKEYTEAINRNP--DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 397 A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
|..+|+...+..+ .+...|..+..++.+.|++++|.+.+++. ...| +...|..+...+...|+++.|...+++.++
T Consensus 445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 9999999876432 24567888999999999999999998874 2344 456788899999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhcCCHHH
Q psy3014 475 LDASNAEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 475 ~~p~~~~~~~~l~~~~~~~~~~~e~ 499 (570)
+.|++...+..+..++.+.|+..++
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHH
Confidence 9999999999999999999996653
No 70
>KOG2376|consensus
Probab=99.82 E-value=5.4e-16 Score=143.19 Aligned_cols=426 Identities=12% Similarity=0.066 Sum_probs=268.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHh
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALS 90 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 90 (570)
...++.--+.+...|+|++|+....+++...|++..++...-.|+++.++|++|+...+.-....-.+ ...+..|.|.+
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Y 90 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHH
Confidence 35677777788889999999999999999999988888888888888888888885554433222111 12267888888
Q ss_pred hccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHH
Q psy3014 91 YLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKE 170 (570)
Q Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (570)
+++..++|+..++ ..++.+.......+.+....+++.++.+.+..+...
T Consensus 91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn---------------------------- 139 (652)
T KOG2376|consen 91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN---------------------------- 139 (652)
T ss_pred HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----------------------------
Confidence 8888888888887 445555555556666665544444443333332210
Q ss_pred HhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchh-HHHHHH
Q psy3014 171 IQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDE-QRSAKK 249 (570)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 249 (570)
+......... ..+......+... ..+..... .+..+.
T Consensus 140 ---~~dd~d~~~r-~nl~a~~a~l~~~--------------------------------------~~q~v~~v~e~syel 177 (652)
T KOG2376|consen 140 ---NSDDQDEERR-ANLLAVAAALQVQ--------------------------------------LLQSVPEVPEDSYEL 177 (652)
T ss_pred ---CCchHHHHHH-HHHHHHHHhhhHH--------------------------------------HHHhccCCCcchHHH
Confidence 0000000000 0000000000000 00000000 146788
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEF--------DPTD-------ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF 314 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 314 (570)
+++.+.++...|+|.+|++.+++++.+ +.+. ..+...++.++..+|+.++|..+|...++.+|.+
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999543 1111 2456788999999999999999999999877755
Q ss_pred h-HHH---------------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy3014 315 K-LIA---------------------------------------------KALQRIGNCYKKMEDWKNAKVYFEKSMSEH 348 (570)
Q Consensus 315 ~-~~~---------------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 348 (570)
. ..+ .++.+.+.+.+..+..+.+.+...+.-...
T Consensus 258 ~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~ 337 (652)
T KOG2376|consen 258 EPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMS 337 (652)
T ss_pred chHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccC
Confidence 1 111 122222222233333333333333333333
Q ss_pred CCHH--------HHHHHHHHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHCCCHHHHHHHHHH--------HHhcCCCC
Q psy3014 349 RTPE--------IRTLISEMEKKIKEEEKKAYIDPVK-AEEAKERGNELFKNGKYADAVKEYTE--------AINRNPDD 411 (570)
Q Consensus 349 ~~~~--------~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~--------al~~~p~~ 411 (570)
|... .......+.++...+......+|.. ..+...++.+.+.+|+++.|+..+.. ..+.. ..
T Consensus 338 p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~ 416 (652)
T KOG2376|consen 338 PESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK-HL 416 (652)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cC
Confidence 3211 1122234666777777777778876 67888899999999999999999983 33222 34
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy3014 412 PKYYSNRAACYTKLAAFDLGLKDCETCLKL-------DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484 (570)
Q Consensus 412 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 484 (570)
|.+-..+-..+++.++.+.|...+.+++.- .+.....+...+.+..+.|+-++|...+++.++.+|++.+++.
T Consensus 417 P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~ 496 (652)
T KOG2376|consen 417 PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLV 496 (652)
T ss_pred hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHH
Confidence 555555666677777766666666666542 3333344556777788889999999999999999999999999
Q ss_pred HHHHHHHHhcCCH-HHHHHHHcCCchHH
Q psy3014 485 GYRQCSIAVSSNP-EEVRKRAMGDPEVQ 511 (570)
Q Consensus 485 ~l~~~~~~~~~~~-e~~~~~~~~~p~~~ 511 (570)
.+..++..+.-.. +.....+...+.+.
T Consensus 497 ~lV~a~~~~d~eka~~l~k~L~p~~~l~ 524 (652)
T KOG2376|consen 497 QLVTAYARLDPEKAESLSKKLPPLKGLK 524 (652)
T ss_pred HHHHHHHhcCHHHHHHHhhcCCCcccch
Confidence 9999999887532 23333333344443
No 71
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.81 E-value=2.6e-17 Score=170.63 Aligned_cols=354 Identities=10% Similarity=0.027 Sum_probs=263.3
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccC--C----------
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK--P---------- 76 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p---------- 76 (570)
.+...+..+...|.+.|++++|...|++... | +...|..+...|.+.|++++|+..|++..... |
T Consensus 156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232 (697)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 4667788888999999999999999998754 4 56788889999999999999999999876532 1
Q ss_pred ------------------------CChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCC
Q psy3014 77 ------------------------DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNR 132 (570)
Q Consensus 77 ------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 132 (570)
.+..++..+...|.+.|++++|...|+... +.+...|..+...+...+...++
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHH
Confidence 134467888999999999999999998764 34667777777777663322222
Q ss_pred CccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccC
Q psy3014 133 GDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMD 212 (570)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (570)
...+..+. ....
T Consensus 310 ~~lf~~M~-------------------------------------------------------~~g~------------- 321 (697)
T PLN03081 310 LCLYYEMR-------------------------------------------------------DSGV------------- 321 (697)
T ss_pred HHHHHHHH-------------------------------------------------------HcCC-------------
Confidence 21111110 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Q psy3014 213 VDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD-PTDITFQNNIAAVY 291 (570)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 291 (570)
..+..++..+...+.+.|++++|.+.+..+++.. +.+..++..+...|
T Consensus 322 -------------------------------~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 322 -------------------------------SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370 (697)
T ss_pred -------------------------------CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence 0123456667777777888888888888877765 45666777778888
Q ss_pred HHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHH--H-------HHHHHHHHH
Q psy3014 292 FERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE--I-------RTLISEMEK 362 (570)
Q Consensus 292 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~-------~~~~~~~~~ 362 (570)
.+.|++++|.+.|++..+ |+ ..+|..+...|.+.|+.++|+..|++.....-.++ . ....|..++
T Consensus 371 ~k~G~~~~A~~vf~~m~~--~d----~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~ 444 (697)
T PLN03081 371 SKWGRMEDARNVFDRMPR--KN----LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444 (697)
T ss_pred HHCCCHHHHHHHHHhCCC--CC----eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH
Confidence 888888888888877654 22 45677777888888888888888887766443322 1 223356777
Q ss_pred HHHHHHHHhcCCh--hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 363 KIKEEEKKAYIDP--VKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 363 a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
+...++......+ .+...|..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...+++.+.
T Consensus 445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 7777777654322 23457888999999999999999998764 2333 567899999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 441 LDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
+.|++...|..++.+|.+.|++++|.+.++...+.
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999987754
No 72
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.81 E-value=1.2e-15 Score=160.04 Aligned_cols=197 Identities=9% Similarity=0.029 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc--ccChhHHHHHHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFD-PTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN--RADFKLIAKALQRIG 325 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~~~~l~ 325 (570)
.+..+...|.+.|++++|.+.|+.+.+.+ +.+...|..+...|.+.|++++|...|.+..+. .|+ ..++..+.
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD----~~TynsLI 656 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD----EVFFSALV 656 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHH
Confidence 33444444445555555555555544443 223444444444555555555555555544432 232 23444444
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 326 NCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYID-PVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 326 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
..|.+.|++++|...++.+.+ .. +.+..++..+...|.+.|++++|...|++.
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k--------------------------~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARK--------------------------QGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--------------------------cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 445555555555555544443 32 345678888999999999999999999988
Q ss_pred HhcC-CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 405 INRN-PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL--DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 405 l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
.... ..+...|..+...|.+.|++++|++.|++.... .|+ ...|..+...+.+.|++++|...+.++.+..
T Consensus 711 ~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 6542 235778999999999999999999999987654 454 5567777788999999999999999998753
No 73
>KOG1840|consensus
Probab=99.81 E-value=8.9e-17 Score=152.52 Aligned_cols=209 Identities=19% Similarity=0.225 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc-----cC
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEF--------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR-----AD 313 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----~~ 313 (570)
......+|.+|...+++.+|+..|++|+.+ +|.-..++.+||.+|...|++++|..++++++++. ..
T Consensus 241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~ 320 (508)
T KOG1840|consen 241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS 320 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC
Confidence 334446899999999999999999999986 34446788999999999999999999999998653 34
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHCC
Q psy3014 314 FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY-IDPVKAEEAKERGNELFKNG 392 (570)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 392 (570)
.+.+...+..++.++..++++++|..+++++++... .+.. .++..+..+.++|.+|..+|
T Consensus 321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~-------------------~~~g~~~~~~a~~~~nl~~l~~~~g 381 (508)
T KOG1840|consen 321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL-------------------DAPGEDNVNLAKIYANLAELYLKMG 381 (508)
T ss_pred hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH-------------------hhccccchHHHHHHHHHHHHHHHhc
Confidence 556788999999999999999999999999887422 1111 44567889999999999999
Q ss_pred CHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHH
Q psy3014 393 KYADAVKEYTEAINRN--------PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL-------DPKFLKGWIRKGKILQ 457 (570)
Q Consensus 393 ~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~ 457 (570)
+|++|.+.|++++.+. +.....+..+|..|.+.+++.+|...|.+++.+ .|+....+.+||.+|.
T Consensus 382 k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~ 461 (508)
T KOG1840|consen 382 KYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYR 461 (508)
T ss_pred chhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Confidence 9999999999999863 334568899999999999999999999998865 3555677889999999
Q ss_pred hCCCHHHHHHHHHHHHh
Q psy3014 458 GMQQQSKAIDAYEKALE 474 (570)
Q Consensus 458 ~~g~~~~A~~~~~~al~ 474 (570)
.+|+++.|+++.++++.
T Consensus 462 ~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 462 AQGNYEAAEELEEKVLN 478 (508)
T ss_pred HcccHHHHHHHHHHHHH
Confidence 99999999999999984
No 74
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.79 E-value=3.2e-15 Score=156.75 Aligned_cols=380 Identities=10% Similarity=0.010 Sum_probs=292.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGT--NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
+...+...-..+.+.|++++|+..|+.....+.- +...+..+...+.+.|..++|...++.... | +...|..+-.
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~ 445 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMS 445 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHH
Confidence 3455556666777899999999999998776532 233344455677888999999999987765 5 4677888888
Q ss_pred HHhhccCHHHHHHHHHHhhccCCC-cHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPN-NEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ 166 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (570)
.+...|++++|...|+.+.+.... +...+..+...+...+....+..
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~-------------------------------- 493 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE-------------------------------- 493 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHH--------------------------------
Confidence 999999999999999999876532 44556666666555221111110
Q ss_pred HHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHH
Q psy3014 167 MIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRS 246 (570)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (570)
.+..+..... ..+
T Consensus 494 -----------------------vf~eM~~~Gv--------------------------------------------~Pd 506 (1060)
T PLN03218 494 -----------------------VFHEMVNAGV--------------------------------------------EAN 506 (1060)
T ss_pred -----------------------HHHHHHHcCC--------------------------------------------CCC
Confidence 0111110000 024
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhh----cccChhHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFD-PTDITFQNNIAAVYFERKEYDQCIEQYIQKIE----NRADFKLIAKAL 321 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~----~~~~~~~~~~~~ 321 (570)
..+|..+...|.+.|++++|+..|++..... .-+...|..+...+.+.|++++|.+.+.+... ..|+ ..++
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD----~vTy 582 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD----HITV 582 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc----HHHH
Confidence 6788899999999999999999999997653 23467889999999999999999999999975 3455 5788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcccCC--H-------HHHHHHHHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHHHH
Q psy3014 322 QRIGNCYKKMEDWKNAKVYFEKSMSEHRT--P-------EIRTLISEMEKKIKEEEKKAYI--DPVKAEEAKERGNELFK 390 (570)
Q Consensus 322 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 390 (570)
..+...|.+.|++++|...|+.+.+..-. . ..+...|++++|...+...... .|+ ..++..+...+.+
T Consensus 583 naLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k 661 (1060)
T PLN03218 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGH 661 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Confidence 88889999999999999999999886532 2 2334567899999999988764 444 5678889999999
Q ss_pred CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCCHHHHHH
Q psy3014 391 NGKYADAVKEYTEAINRN-PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL--DPKFLKGWIRKGKILQGMQQQSKAID 467 (570)
Q Consensus 391 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~ 467 (570)
.|++++|...+.++.+.. +.+...|..+...|.+.|++++|...|++.... .| +...|..+...|.+.|++++|.+
T Consensus 662 ~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999998764 346789999999999999999999999988654 45 46789999999999999999999
Q ss_pred HHHHHHhh--CCCcHHHHHHHHHHHHHhcCCHH
Q psy3014 468 AYEKALEL--DASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 468 ~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~e 498 (570)
.|++.... .|+ ...+..+..++.+.|+..+
T Consensus 741 lf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 741 VLSEMKRLGLCPN-TITYSILLVASERKDDADV 772 (1060)
T ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHH
Confidence 99988754 465 5566667788888888544
No 75
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=1.2e-15 Score=130.62 Aligned_cols=116 Identities=14% Similarity=0.137 Sum_probs=94.7
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCC-----hhHHh
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW-----PKGYS 83 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~ 83 (570)
.....-+-.|..++-..+.++|++.|-.+++.+|...+++..+|..+.+.|..+.|+..-+..+. .|+. ..+..
T Consensus 33 ~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~ 111 (389)
T COG2956 33 NRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQ 111 (389)
T ss_pred hhccHHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHH
Confidence 33445567788899999999999999999999999999999999999999999999998877655 4543 45788
Q ss_pred HHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 84 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
.+|.=|+..|-++.|...|....+...--..+...|..+|..
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~ 153 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQA 153 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHH
Confidence 999999999999999999998887544444555555544444
No 76
>KOG1840|consensus
Probab=99.78 E-value=4.9e-17 Score=154.23 Aligned_cols=237 Identities=16% Similarity=0.175 Sum_probs=201.2
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc----
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEF--------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN---- 310 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---- 310 (570)
.|....+...+|..|...|+|++|+..++.++.. .|.-......+|.+|..++++.+|+..|++++.+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4567777888999999999999999999999998 5555556667999999999999999999999965
Q ss_pred -ccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q psy3014 311 -RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELF 389 (570)
Q Consensus 311 -~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (570)
.++++..+.++.+||.+|...|++++|..++++++.+... ......|.....+..++.++.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~------------------~~~~~~~~v~~~l~~~~~~~~ 336 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK------------------LLGASHPEVAAQLSELAAILQ 336 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH------------------hhccChHHHHHHHHHHHHHHH
Confidence 3567777999999999999999999999999999874321 111255667778889999999
Q ss_pred HCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC--------CCCHHHHHHHH
Q psy3014 390 KNGKYADAVKEYTEAINRN--------PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD--------PKFLKGWIRKG 453 (570)
Q Consensus 390 ~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~ 453 (570)
..+++++|+.++++++++. |.-+..+.++|.+|..+|++++|.+++++|+.+. +.....+..+|
T Consensus 337 ~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la 416 (508)
T KOG1840|consen 337 SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLA 416 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHH
Confidence 9999999999999998762 2346689999999999999999999999999863 33456788899
Q ss_pred HHHHhCCCHHHHHHHHHHHHhh-------CCCcHHHHHHHHHHHHHhcCCH
Q psy3014 454 KILQGMQQQSKAIDAYEKALEL-------DASNAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~~~~~ 497 (570)
..|.+++++.+|...|..+..+ .|+-...+.+|+.+|..+|+..
T Consensus 417 ~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e 467 (508)
T KOG1840|consen 417 EAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYE 467 (508)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence 9999999999999999988875 3666788899999999999954
No 77
>KOG3785|consensus
Probab=99.78 E-value=3.4e-16 Score=135.34 Aligned_cols=364 Identities=15% Similarity=0.111 Sum_probs=245.9
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCc-chhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHH
Q psy3014 20 AALQANNFIEAIEAYSEAIKLDGTNH-ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKES 98 (570)
Q Consensus 20 ~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 98 (570)
-++...+|..|+..++-.+..+.... ..-..+|.|++++|+|++|+..|+-+...+.-+.+.+..+|.|++-+|.|.+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 35678899999999999887665432 55667999999999999999999999887766788999999999999999999
Q ss_pred HHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhH
Q psy3014 99 ISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLM 178 (570)
Q Consensus 99 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (570)
...-.++ |+++-....+-.+... .+.+. .+..
T Consensus 111 ~~~~~ka----~k~pL~~RLlfhlahk-lndEk-------------------------------~~~~------------ 142 (557)
T KOG3785|consen 111 KSIAEKA----PKTPLCIRLLFHLAHK-LNDEK-------------------------------RILT------------ 142 (557)
T ss_pred HHHHhhC----CCChHHHHHHHHHHHH-hCcHH-------------------------------HHHH------------
Confidence 8776654 5555444443333332 00000 0000
Q ss_pred HhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHH
Q psy3014 179 TTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAY 258 (570)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 258 (570)
+..-+ .+..+-...++.+++
T Consensus 143 ------------fh~~L------------------------------------------------qD~~EdqLSLAsvhY 162 (557)
T KOG3785|consen 143 ------------FHSSL------------------------------------------------QDTLEDQLSLASVHY 162 (557)
T ss_pred ------------HHHHH------------------------------------------------hhhHHHHHhHHHHHH
Confidence 00000 022234455788888
Q ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHH
Q psy3014 259 KKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAK 338 (570)
Q Consensus 259 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 338 (570)
..-.|.+|+..|.+++..+|+.......+|.||.++.-|+-+.+.+.-.+...|++ +.+....+...++.=+-..|.
T Consensus 163 mR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS---tiA~NLkacn~fRl~ngr~ae 239 (557)
T KOG3785|consen 163 MRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS---TIAKNLKACNLFRLINGRTAE 239 (557)
T ss_pred HHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc---HHHHHHHHHHHhhhhccchhH
Confidence 88899999999999999999999999999999999999999999999999999998 666666555554432222222
Q ss_pred HHHHHHhc------------------ccCCHH----------------------HHHHHHHHHHHHHHHHHHhcCChhhH
Q psy3014 339 VYFEKSMS------------------EHRTPE----------------------IRTLISEMEKKIKEEEKKAYIDPVKA 378 (570)
Q Consensus 339 ~~~~~~~~------------------~~~~~~----------------------~~~~~~~~~~a~~~~~~~~~~~~~~~ 378 (570)
.-.+.... ...+.+ .+...++.++|+...+. .+|..|
T Consensus 240 ~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP 316 (557)
T KOG3785|consen 240 DEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTP 316 (557)
T ss_pred HHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCCh
Confidence 22222111 111110 11233556666665554 678888
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH---hcC------CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHH
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAI---NRN------PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 449 (570)
.-+...|.++...|+--...+.++.+- ++. -+.......+|.+++-..++++.+.+++..-...-++....
T Consensus 317 ~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn 396 (557)
T KOG3785|consen 317 YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN 396 (557)
T ss_pred HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 888888888877776554444443332 221 12233455666777777777777777777666666677777
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhcCCH
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKALELD-ASNAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~ 497 (570)
+++++.+...|++.+|.+.|-++-..+ .+.......|++|+.+-++..
T Consensus 397 ~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 397 LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCch
Confidence 888888888888888888887776555 334445567888887777643
No 78
>PLN03077 Protein ECB2; Provisional
Probab=99.78 E-value=4.8e-16 Score=165.33 Aligned_cols=244 Identities=8% Similarity=-0.049 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCY 328 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 328 (570)
+|..+...+...|++++|+..|++.+...+.+...+..+-..+...|..+.+.+.+..+++..-... ..+...+-..|
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~--~~~~naLi~~y 534 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD--GFLPNALLDLY 534 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc--ceechHHHHHH
Confidence 4555666666777777777777777654333444444444455556666666666655554321110 33444556677
Q ss_pred HHcCCHHHHHHHHHHHhcccCCH-------HHHHHHHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHCCCHHHHHH
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTP-------EIRTLISEMEKKIKEEEKKAY--IDPVKAEEAKERGNELFKNGKYADAVK 399 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~ 399 (570)
.+.|+.++|...|+.. .++. ..+...|+.++|+..+++... ..|+ ..++..+-..+.+.|++++|..
T Consensus 535 ~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHH
Confidence 7777777777777765 2221 123344667777777776654 3444 3445556667889999999999
Q ss_pred HHHHHHhcCC--CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 400 EYTEAINRNP--DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 400 ~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
+|+...+..+ .+...|..+..++.+.|++++|.+.+++. ...|+ +..|..+-..+...|+.+.|....+++++++|
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p 688 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDP 688 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Confidence 9999874432 24578899999999999999999999885 35565 56677777778889999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhcCCHHHH
Q psy3014 478 SNAEAVEGYRQCSIAVSSNPEEV 500 (570)
Q Consensus 478 ~~~~~~~~l~~~~~~~~~~~e~~ 500 (570)
++...+..++.+|...|+..+..
T Consensus 689 ~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 689 NSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred CCcchHHHHHHHHHHCCChHHHH
Confidence 99999999999999999976533
No 79
>KOG1915|consensus
Probab=99.78 E-value=2.8e-14 Score=128.38 Aligned_cols=401 Identities=14% Similarity=0.117 Sum_probs=286.8
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHh
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (570)
++..--+...|..-|.--..++++..|.+.|++||..+..+...|...+.+-++.++...|...+++|+.+-|.-...|+
T Consensus 66 irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy 145 (677)
T KOG1915|consen 66 IRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY 145 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH
Confidence 44455567888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChH
Q psy3014 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS 163 (570)
Q Consensus 84 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (570)
.....-..+|+...|.+.|++-++..|+. .+|......-.....
T Consensus 146 KY~ymEE~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRyke----------------------------------- 189 (677)
T KOG1915|consen 146 KYIYMEEMLGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKE----------------------------------- 189 (677)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhH-----------------------------------
Confidence 99999999999999999999999999964 344433332222000
Q ss_pred HHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchh
Q psy3014 164 YVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDE 243 (570)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (570)
..+....+..++-..
T Consensus 190 --------------------ieraR~IYerfV~~H--------------------------------------------- 204 (677)
T KOG1915|consen 190 --------------------IERARSIYERFVLVH--------------------------------------------- 204 (677)
T ss_pred --------------------HHHHHHHHHHHheec---------------------------------------------
Confidence 011111222222111
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDI---TFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKA 320 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 320 (570)
.....|...+..-.+.|+..-|...|++|++...++. ......|..-..++.++.|.-+|+-++..-|.+.. ...
T Consensus 205 -P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra-eeL 282 (677)
T KOG1915|consen 205 -PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA-EEL 282 (677)
T ss_pred -ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH-HHH
Confidence 2355677778888888888888888888887655543 23344555556677788888888888877776621 222
Q ss_pred HHHHHHHHHHcCCH---HHHHH-----HHHHHhcccCCH--------HHHHHHHHHHHHHHHHHHHhcCChhhHH-----
Q psy3014 321 LQRIGNCYKKMEDW---KNAKV-----YFEKSMSEHRTP--------EIRTLISEMEKKIKEEEKKAYIDPVKAE----- 379 (570)
Q Consensus 321 ~~~l~~~~~~~~~~---~~A~~-----~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~----- 379 (570)
+......-.+-|+. ++++. .|++.+..+|.. .+....|..+.-.+.|++++...|...+
T Consensus 283 ~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~ 362 (677)
T KOG1915|consen 283 YKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWR 362 (677)
T ss_pred HHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHH
Confidence 22222222333442 23322 244445444431 1233345667777888888876664322
Q ss_pred ----HHHHHHH-HHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHH
Q psy3014 380 ----EAKERGN-ELFKNGKYADAVKEYTEAINRNPDD----PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWI 450 (570)
Q Consensus 380 ----~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 450 (570)
.|.+.+. .-+...+.+.+.+.|+.++++-|.. +.+|...|....++.+...|.+.+-.|+...|.+. .+-
T Consensus 363 RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk 441 (677)
T KOG1915|consen 363 RYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFK 441 (677)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHH
Confidence 2222221 1235678888888888888887753 56788888888888899999999999999988753 445
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHH--HHHHHHcCCc
Q psy3014 451 RKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPE--EVRKRAMGDP 508 (570)
Q Consensus 451 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e--~~~~~~~~~p 508 (570)
....+-.++++++.....|++.++.+|.+..+|..++.+-..+|+++. +.+..+...|
T Consensus 442 ~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 442 GYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 566777889999999999999999999999999999999999999653 5566665555
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.78 E-value=3.7e-17 Score=146.07 Aligned_cols=189 Identities=20% Similarity=0.238 Sum_probs=153.1
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc---chhhchhHHHhcccCHHHHHHHHhchhccCCCChh---
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH---ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPK--- 80 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 80 (570)
.+..++.++.+|..++..|+|++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 356789999999999999999999999999999999876 57899999999999999999999999999998876
Q ss_pred HHhHHHHHHhhc--------cCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhC
Q psy3014 81 GYSRKGSALSYL--------GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLD 152 (570)
Q Consensus 81 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (570)
+++.+|.++... |++++|+..|++++..+|++...+..+..+....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~-------------------------- 162 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR-------------------------- 162 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH--------------------------
Confidence 799999999876 8899999999999999999877665443332210
Q ss_pred CCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy3014 153 PRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKP 232 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (570)
T Consensus 163 -------------------------------------------------------------------------------- 162 (235)
T TIGR03302 163 -------------------------------------------------------------------------------- 162 (235)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q psy3014 233 AEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQNNIAAVYFERKEYDQCIEQYIQKIE 309 (570)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 309 (570)
.........+|..++..|++.+|+..|++++...|+. +.+++.+|.++...|++++|+.+++.+..
T Consensus 163 -----------~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 163 -----------NRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred -----------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0111223457777888888888888888888876654 46778888888888888888887777665
Q ss_pred ccc
Q psy3014 310 NRA 312 (570)
Q Consensus 310 ~~~ 312 (570)
..|
T Consensus 232 ~~~ 234 (235)
T TIGR03302 232 NYP 234 (235)
T ss_pred hCC
Confidence 544
No 81
>KOG0553|consensus
Probab=99.77 E-value=1.8e-17 Score=141.04 Aligned_cols=121 Identities=39% Similarity=0.647 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKIL 456 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 456 (570)
.++.+..-|.-+++.++|.+|+..|.+||+++|.++..|.++|.+|.++|.++.|++.++.++.++|.+..+|.++|.+|
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 35667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCH
Q psy3014 457 QGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 457 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 497 (570)
..+|++++|++.|+++|+++|+|...+.+|..+..+++...
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999998743
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.77 E-value=7.6e-15 Score=141.45 Aligned_cols=317 Identities=18% Similarity=0.162 Sum_probs=215.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
..+.+.-+..++...|++++|++.+++....-++...++-.+|.+++++|++++|...|...|..+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 46778888999999999999999999988888888889999999999999999999999999999999999999988887
Q ss_pred hhcc-----CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHH
Q psy3014 90 SYLG-----RYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY 164 (570)
Q Consensus 90 ~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (570)
.-.. +.+.-...|+......|........--. +.....|
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~------------------------------------~~~g~~F 126 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLD------------------------------------FLEGDEF 126 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcc------------------------------------cCCHHHH
Confidence 3332 4666777888887777765433221000 0001111
Q ss_pred HHHHHH-----H-hhCchhHH---hhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 165 VQMIKE-----I-QKDPSLMT---TKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEP 235 (570)
Q Consensus 165 ~~~~~~-----~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (570)
...+.. + ...|.... ....++.-...+..++............ ...
T Consensus 127 ~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~-------------------------~~~ 181 (517)
T PF12569_consen 127 KERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGS-------------------------FSN 181 (517)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCC-------------------------CCC
Confidence 111111 1 11122111 1112222122222222111100000000 000
Q ss_pred CCcccch-hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh
Q psy3014 236 EDKNLTD-EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF 314 (570)
Q Consensus 236 ~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 314 (570)
....... .....++++.++..|...|++++|+.+++++|+..|+.++.+...|.++...|++.+|...++.+..+++.+
T Consensus 182 ~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 182 GDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 0000011 113468889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCH
Q psy3014 315 KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394 (570)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (570)
-.+....+..+.+.|+.++|...+........++. ..+ .+-...+.....|.+|.+.|++
T Consensus 262 ---RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~--~~L---------------~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 262 ---RYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPL--SNL---------------NDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcc--cCH---------------HHHHHHHHHHHHHHHHHHHhhH
Confidence 77788888999999999999999988776442110 000 0011233334567777777888
Q ss_pred HHHHHHHHHHHhc
Q psy3014 395 ADAVKEYTEAINR 407 (570)
Q Consensus 395 ~~A~~~~~~al~~ 407 (570)
..|++.|..+.+.
T Consensus 322 ~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 322 GLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766544
No 83
>KOG0550|consensus
Probab=99.77 E-value=2e-17 Score=145.90 Aligned_cols=257 Identities=22% Similarity=0.333 Sum_probs=226.0
Q ss_pred chhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHH
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKA 320 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 320 (570)
......+.-....|..++...+|..|+..|..|++..|++...|...+.+++..+++++|.-..++.+++.|.. ...
T Consensus 43 ~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~---~k~ 119 (486)
T KOG0550|consen 43 QEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGF---SKG 119 (486)
T ss_pred chHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCc---ccc
Confidence 34446778888899999999999999999999999999999999999999999999999999999999999998 778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh---------------cccC-----------CHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3014 321 LQRIGNCYKKMEDWKNAKVYFEKSM---------------SEHR-----------TPEIRTLISEMEKKIKEEEKKAYID 374 (570)
Q Consensus 321 ~~~l~~~~~~~~~~~~A~~~~~~~~---------------~~~~-----------~~~~~~~~~~~~~a~~~~~~~~~~~ 374 (570)
+...+.++...++..+|...++..- ..+. ....+..++.++.|+..--..+.++
T Consensus 120 ~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld 199 (486)
T KOG0550|consen 120 QLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD 199 (486)
T ss_pred ccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc
Confidence 8888888888888877776665221 1110 0235566788899999999999999
Q ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH------------HHHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy3014 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPK------------YYSNRAACYTKLAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------------~~~~la~~~~~~~~~~~A~~~~~~al~~~ 442 (570)
+.+.++++..|.+++..++.+.|+..|++++.++|+... .+-..|.-.++.|++..|.+.|..+|.++
T Consensus 200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999998643 56677888999999999999999999999
Q ss_pred CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHHH
Q psy3014 443 PKF----LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEEV 500 (570)
Q Consensus 443 p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~~ 500 (570)
|++ ...|.++|.+..++|+..+|+...+.+++++|....++..-+.|+..+++..+++
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 986 5668899999999999999999999999999999999999999999999976644
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.76 E-value=2.8e-15 Score=143.47 Aligned_cols=208 Identities=11% Similarity=-0.055 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChh-HHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFK-LIAKALQR 323 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~~ 323 (570)
........+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..+++++...|..+ .....+..
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~ 191 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWH 191 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHH
Confidence 44566677899999999999999999999999999999999999999999999999999999998876432 12346778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHH---HHHHHHHHCCCHHHHHHH
Q psy3014 324 IGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAK---ERGNELFKNGKYADAVKE 400 (570)
Q Consensus 324 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~A~~~ 400 (570)
+|.++...|++++|+..|++++...+.. ....... .+...+...|....+..+
T Consensus 192 la~~~~~~G~~~~A~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~l~~~~~~g~~~~~~~w 247 (355)
T cd05804 192 LALFYLERGDYEAALAIYDTHIAPSAES------------------------DPALDLLDAASLLWRLELAGHVDVGDRW 247 (355)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccccCC------------------------ChHHHHhhHHHHHHHHHhcCCCChHHHH
Confidence 9999999999999999999987632210 1111110 112223333432222222
Q ss_pred --H-HHHHhcCCC--CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHhCCCHHHHH
Q psy3014 401 --Y-TEAINRNPD--DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK---------FLKGWIRKGKILQGMQQQSKAI 466 (570)
Q Consensus 401 --~-~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~g~~~~A~ 466 (570)
. .......|. ........+.++...|+.+.|...++........ ........+.++...|++++|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~ 327 (355)
T cd05804 248 EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATAL 327 (355)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHH
Confidence 1 111111121 2233346888888999999999999887654322 2455667889999999999999
Q ss_pred HHHHHHHhhC
Q psy3014 467 DAYEKALELD 476 (570)
Q Consensus 467 ~~~~~al~~~ 476 (570)
..+..++.+.
T Consensus 328 ~~L~~al~~a 337 (355)
T cd05804 328 ELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHH
Confidence 9999999765
No 85
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.76 E-value=6.4e-17 Score=130.37 Aligned_cols=125 Identities=18% Similarity=0.231 Sum_probs=116.7
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH
Q psy3014 367 EEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL 446 (570)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 446 (570)
+++++..+|+. +..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..|++++.++|+++
T Consensus 16 ~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~ 92 (144)
T PRK15359 16 LKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP 92 (144)
T ss_pred HHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 44444488875 567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
.+++++|.++..+|++++|+..|+++++++|+++..+..++.+...++
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887654
No 86
>PLN03077 Protein ECB2; Provisional
Probab=99.76 E-value=1.4e-15 Score=161.68 Aligned_cols=237 Identities=12% Similarity=0.042 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIG 325 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~ 325 (570)
+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|+..|++.....+.+ ..++..+-
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd---~~t~~~lL 496 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN---SVTLIAAL 496 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC---HhHHHHHH
Confidence 345677788999999999999999998643 456788999999999999999999999998543333 56777777
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCC---------HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHH
Q psy3014 326 NCYKKMEDWKNAKVYFEKSMSEHRT---------PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYAD 396 (570)
Q Consensus 326 ~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (570)
..+...|..+.+...+..+++..-. -+.+...|++++|...++.. +.+..+|..+...|...|+.++
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~ 572 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSM 572 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHH
Confidence 7888999999999999988875433 24556678899999999875 5577889999999999999999
Q ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy3014 397 AVKEYTEAINR--NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL---DPKFLKGWIRKGKILQGMQQQSKAIDAYEK 471 (570)
Q Consensus 397 A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (570)
|+..|++..+. .|+ ...+..+-..+.+.|+.++|..+|+...+. .| +...|..+..++.+.|++++|.+.+++
T Consensus 573 A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 573 AVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999998874 454 445666667899999999999999998844 34 346788899999999999999999988
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhcCC
Q psy3014 472 ALELDASNAEAVEGYRQCSIAVSSN 496 (570)
Q Consensus 472 al~~~p~~~~~~~~l~~~~~~~~~~ 496 (570)
. ...|+ ..+|..|-.++...++.
T Consensus 651 m-~~~pd-~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 651 M-PITPD-PAVWGALLNACRIHRHV 673 (857)
T ss_pred C-CCCCC-HHHHHHHHHHHHHcCCh
Confidence 5 46675 67787777777666663
No 87
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.74 E-value=7e-16 Score=137.84 Aligned_cols=203 Identities=14% Similarity=0.044 Sum_probs=149.7
Q ss_pred chhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHH
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDI---TFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLI 317 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 317 (570)
+..+..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 34566778888999999999999999999999999888875 577888999999999999999999999888888655
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
..+++.+|.++.... .......+.+++|+..+++++..+|.+...+..+..+....+ .
T Consensus 107 ~~a~~~~g~~~~~~~------------------~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~ 164 (235)
T TIGR03302 107 DYAYYLRGLSNYNQI------------------DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R 164 (235)
T ss_pred HHHHHHHHHHHHHhc------------------ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H
Confidence 567888888876540 011223455666777777777777766544432222211000 0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF---LKGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
.......+|.++...|++.+|+..+++++...|+. +.+++.+|.++..+|++++|..+++....
T Consensus 165 -------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 165 -------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred -------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 01223578888999999999999999999987664 57899999999999999999998888776
Q ss_pred hCCC
Q psy3014 475 LDAS 478 (570)
Q Consensus 475 ~~p~ 478 (570)
..|+
T Consensus 232 ~~~~ 235 (235)
T TIGR03302 232 NYPD 235 (235)
T ss_pred hCCC
Confidence 6653
No 88
>KOG2376|consensus
Probab=99.73 E-value=1.3e-13 Score=127.75 Aligned_cols=196 Identities=17% Similarity=0.211 Sum_probs=138.9
Q ss_pred hhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhcc
Q psy3014 51 RSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDM 130 (570)
Q Consensus 51 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 130 (570)
--..+...|+|++|+....+.+...|++..+....-.++.+.++|++|+...+.-....-.+... +.-+.+......
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yrlnk-- 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF-FEKAYCEYRLNK-- 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh-HHHHHHHHHccc--
Confidence 33456788999999999999999999999999999999999999999996555433222222221 222222222000
Q ss_pred CCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcc
Q psy3014 131 NRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEE 210 (570)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (570)
..+++..+. +.
T Consensus 95 ---------------------------------~Dealk~~~-----------------------~~------------- 105 (652)
T KOG2376|consen 95 ---------------------------------LDEALKTLK-----------------------GL------------- 105 (652)
T ss_pred ---------------------------------HHHHHHHHh-----------------------cc-------------
Confidence 011111110 00
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------------
Q psy3014 211 MDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDP------------ 278 (570)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------------ 278 (570)
++.+.......|.++++.|+|++|+..|+..++.+.
T Consensus 106 --------------------------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 106 --------------------------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred --------------------------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 112344667789999999999999999998865422
Q ss_pred ------------------C-CHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc--------cCh----hHHHHHHHHHHHH
Q psy3014 279 ------------------T-DITFQNNIAAVYFERKEYDQCIEQYIQKIENR--------ADF----KLIAKALQRIGNC 327 (570)
Q Consensus 279 ------------------~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--------~~~----~~~~~~~~~l~~~ 327 (570)
. +.+..++.|.++...|+|.+|++.+++++++. .+. ..+..+...++.+
T Consensus 154 a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 154 AVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred HHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 2 34677899999999999999999999995321 110 2346678899999
Q ss_pred HHHcCCHHHHHHHHHHHhcccCC
Q psy3014 328 YKKMEDWKNAKVYFEKSMSEHRT 350 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~~~~~ 350 (570)
+..+|+..+|...|...+...+.
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcCC
Confidence 99999999999999999886654
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.73 E-value=2.5e-14 Score=136.90 Aligned_cols=303 Identities=11% Similarity=0.010 Sum_probs=218.1
Q ss_pred CCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCC---hhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHH
Q psy3014 41 DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW---PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKE 117 (570)
Q Consensus 41 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 117 (570)
+|+.+.++..+|.++...|+.+.|...+.++....|.+ .+..+..|.++...|++++|...++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 79999999999999999999999999999988877754 456778899999999999999999999999998875543
Q ss_pred HHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcC
Q psy3014 118 AIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGV 197 (570)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (570)
. +..+..
T Consensus 82 ~-~~~~~~------------------------------------------------------------------------ 88 (355)
T cd05804 82 L-HLGAFG------------------------------------------------------------------------ 88 (355)
T ss_pred H-hHHHHH------------------------------------------------------------------------
Confidence 2 111111
Q ss_pred cccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q psy3014 198 NMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD 277 (570)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 277 (570)
+| ...+....+...+......+
T Consensus 89 -------------------------------------------------------~~---~~~~~~~~~~~~l~~~~~~~ 110 (355)
T cd05804 89 -------------------------------------------------------LG---DFSGMRDHVARVLPLWAPEN 110 (355)
T ss_pred -------------------------------------------------------hc---ccccCchhHHHHHhccCcCC
Confidence 11 11344445555555555667
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHH
Q psy3014 278 PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLI 357 (570)
Q Consensus 278 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 357 (570)
|....++..+|.++...|++++|+..++++++..|++ ..++..+|.++...|++++|+.++.+++...+.
T Consensus 111 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~------- 180 (355)
T cd05804 111 PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC------- 180 (355)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-------
Confidence 8888888999999999999999999999999999999 889999999999999999999999999983321
Q ss_pred HHHHHHHHHHHHHhcCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHH---HHHHHHHHhcChHHH
Q psy3014 358 SEMEKKIKEEEKKAYIDPV-KAEEAKERGNELFKNGKYADAVKEYTEAINRNPD--DPKYYS---NRAACYTKLAAFDLG 431 (570)
Q Consensus 358 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~---~la~~~~~~~~~~~A 431 (570)
.|. ....+..+|.++...|++++|+..|++++...|. ...... .+...+...|....+
T Consensus 181 ----------------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 181 ----------------SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred ----------------CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 111 1345678999999999999999999999876662 222111 222233334433333
Q ss_pred HHH--H-HHHHhcCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC---------cHHHHHHHHHHHHHhcCCH
Q psy3014 432 LKD--C-ETCLKLDPK--FLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS---------NAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 432 ~~~--~-~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~~~~~ 497 (570)
..+ . .......|. ........+.++...|+.++|...++......-. ...+....+.+....|+..
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 222 1 111111122 2233346888889999999999999887664322 3455566777777778755
Q ss_pred HHH
Q psy3014 498 EEV 500 (570)
Q Consensus 498 e~~ 500 (570)
++.
T Consensus 325 ~A~ 327 (355)
T cd05804 325 TAL 327 (355)
T ss_pred HHH
Confidence 543
No 90
>KOG3060|consensus
Probab=99.70 E-value=5.7e-14 Score=116.35 Aligned_cols=210 Identities=19% Similarity=0.189 Sum_probs=184.9
Q ss_pred ccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCC
Q psy3014 260 KKNFEEALAHYNKAVEF------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMED 333 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 333 (570)
..+.++-+++....+.. .|+...++-....+....|+.+-|..++++.....|.+ ..+....|..+...|+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S---~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGS---KRVGKLKAMLLEATGN 101 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHhhc
Confidence 34556666666655543 34445566667777888999999999999998888998 7888888999999999
Q ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Q psy3014 334 WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPK 413 (570)
Q Consensus 334 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 413 (570)
+++|+++|+..++ .+|.+..++...-.+...+|+..+|++.+...++..+.+++
T Consensus 102 ~~~A~e~y~~lL~--------------------------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~E 155 (289)
T KOG3060|consen 102 YKEAIEYYESLLE--------------------------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQE 155 (289)
T ss_pred hhhHHHHHHHHhc--------------------------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHH
Confidence 9999999999999 88888888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy3014 414 YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQ---QQSKAIDAYEKALELDASNAEAVEGYRQCS 490 (570)
Q Consensus 414 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 490 (570)
+|..++.+|...|+|++|.-++++.+-+.|-++..+..+|.+++-+| +++-|.++|.++++++|.+..++.++..|.
T Consensus 156 AW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 156 AWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877 688899999999999999999999999998
Q ss_pred HHhcCCHH
Q psy3014 491 IAVSSNPE 498 (570)
Q Consensus 491 ~~~~~~~e 498 (570)
..+-+.+.
T Consensus 236 ~~la~~sk 243 (289)
T KOG3060|consen 236 SALAQISK 243 (289)
T ss_pred HHHHHHhH
Confidence 88876443
No 91
>KOG0553|consensus
Probab=99.69 E-value=2.2e-16 Score=134.59 Aligned_cols=119 Identities=39% Similarity=0.686 Sum_probs=113.8
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
....++.+...|+.+++.++|.+|+..|.+||.++|+++..|.++|.+|.++|+++.|++.++.++.++|....+|.++|
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
.+|..+|++.+|+..|+++++++|+|..++..|..+...
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999888887777655
No 92
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.67 E-value=9.3e-15 Score=124.38 Aligned_cols=112 Identities=15% Similarity=0.212 Sum_probs=101.5
Q ss_pred cCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhcC--hHHHHHHHHHHHhcCCCCHHH
Q psy3014 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY-TKLAA--FDLGLKDCETCLKLDPKFLKG 448 (570)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~ 448 (570)
..+|++++.|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|...++++++.+|+++.+
T Consensus 67 ~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~a 146 (198)
T PRK10370 67 RANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTA 146 (198)
T ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhH
Confidence 389999999999999999999999999999999999999999999999975 67777 599999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 449 WIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
++.+|.++...|++++|+.+|+++++++|.+..-.
T Consensus 147 l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 147 LMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999999999999999988765444
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.67 E-value=2.3e-15 Score=121.30 Aligned_cols=125 Identities=12% Similarity=0.176 Sum_probs=74.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy3014 268 AHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSE 347 (570)
Q Consensus 268 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 347 (570)
.+|+++++++|++ +..+|.++...|++++|+..|++++..+|.+ ..++..+|.++...|++++|+..|++++.
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~y~~Al~- 86 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS---WRAHIALAGTWMMLKEYTTAINFYGHALM- 86 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-
Confidence 4556666666553 3445666666666666666666666666665 55666666666666666666666666655
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy3014 348 HRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK 424 (570)
Q Consensus 348 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 424 (570)
.+|.++.+++.+|.++...|++++|+..|++++...|+++..+.++|.+...
T Consensus 87 -------------------------l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 -------------------------LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred -------------------------cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 5555566666666666666666666666666666666666555555554433
No 94
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.67 E-value=1.4e-14 Score=145.73 Aligned_cols=71 Identities=10% Similarity=-0.043 Sum_probs=56.4
Q ss_pred cCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCc
Q psy3014 40 LDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112 (570)
Q Consensus 40 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (570)
.+|.+..++..+...+...|++++|+..++.+++.+|+....++.+|.++...+++.+|... .++...+.+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~ 96 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN 96 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc
Confidence 46777888888888888888888888888888888888888888888888888887777665 555554443
No 95
>KOG3785|consensus
Probab=99.67 E-value=2.8e-13 Score=117.55 Aligned_cols=401 Identities=14% Similarity=0.078 Sum_probs=254.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhcc--------------C----
Q psy3014 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL--------------K---- 75 (570)
Q Consensus 14 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~---- 75 (570)
-.-+|.++++.|+|++|+..|+-+...+.-+.+.+.++|.|++-+|.|.+|.....++-+. +
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHH
Confidence 3446899999999999999999999887778899999999999999999999988776432 1
Q ss_pred --------CCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCcccc----ccCCCc
Q psy3014 76 --------PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFA----NLFSDP 143 (570)
Q Consensus 76 --------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~ 143 (570)
.+..+-...+|.+++..-.|.+|+..|.+++.-+|+.......++.++.. .+........- +.+.+.
T Consensus 140 ~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK-lDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 140 ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK-LDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh-cchhhhHHHHHHHHHHhCCCc
Confidence 01223456678888888899999999999999999988888888888877 33222111110 001010
Q ss_pred hHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCC
Q psy3014 144 NIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKA 223 (570)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (570)
.+...+......+ .........-.+.+..+.+. .......+...+.-...+...
T Consensus 219 tiA~NLkacn~fR-l~ngr~ae~E~k~ladN~~~---------~~~f~~~l~rHNLVvFrngEg---------------- 272 (557)
T KOG3785|consen 219 TIAKNLKACNLFR-LINGRTAEDEKKELADNIDQ---------EYPFIEYLCRHNLVVFRNGEG---------------- 272 (557)
T ss_pred HHHHHHHHHHHhh-hhccchhHHHHHHHHhcccc---------cchhHHHHHHcCeEEEeCCcc----------------
Confidence 0100000000000 00001111111111111110 000111111111000000000
Q ss_pred CCCCCCCCCCCCCCcccch-hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Q psy3014 224 PSPPPAKKPAEPEDKNLTD-EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIE 302 (570)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 302 (570)
..+.++. -.--|++..++...|.++++..+|+...+. ++|..|.-+...|.++...|+-....+
T Consensus 273 ------------ALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 273 ------------ALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred ------------HHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHH
Confidence 0000000 113467888899999999999999888774 689999999999999998887554444
Q ss_pred HHHHH---hhcccChh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh
Q psy3014 303 QYIQK---IENRADFK---LIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV 376 (570)
Q Consensus 303 ~~~~~---l~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 376 (570)
.++-+ +.+-..+. ........++.+++-..++++.+.+++..-. ...+
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s--------------------------YF~N 391 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES--------------------------YFTN 391 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HhcC
Confidence 44333 22221110 0123344566667777788888888776665 4556
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH-HHHHHHHH
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRN-PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL-KGWIRKGK 454 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~ 454 (570)
+....+++++.....|+|.+|.+.|-+.-... .+.......+|.||.+.+.++.|...+-+. -.|... ..+-.++.
T Consensus 392 dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn 469 (557)
T KOG3785|consen 392 DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIAN 469 (557)
T ss_pred cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHH
Confidence 66778899999999999999999998775544 234556678999999999999998877552 123332 33445788
Q ss_pred HHHhCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy3014 455 ILQGMQQQSKAIDAYEKALELDASNAEAVEG 485 (570)
Q Consensus 455 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 485 (570)
.+++.+++--|-+.|...-.+||+ ++-|.+
T Consensus 470 ~CYk~~eFyyaaKAFd~lE~lDP~-pEnWeG 499 (557)
T KOG3785|consen 470 DCYKANEFYYAAKAFDELEILDPT-PENWEG 499 (557)
T ss_pred HHHHHHHHHHHHHhhhHHHccCCC-ccccCC
Confidence 899999999999999998888986 555544
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.65 E-value=2.6e-13 Score=130.95 Aligned_cols=308 Identities=16% Similarity=0.177 Sum_probs=205.0
Q ss_pred cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q psy3014 45 HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRN 124 (570)
Q Consensus 45 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 124 (570)
.++......++...|++++|++.+++....-++.....-.+|.++..+|++++|...|...++.+|+|...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 46677788899999999999999999988888999999999999999999999999999999999999999988888764
Q ss_pred HhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCC
Q psy3014 125 QEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMG 204 (570)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (570)
........ ...........+...- |+.
T Consensus 84 ~~~~~~~~---------------------------~~~~~~~~y~~l~~~y---------p~s----------------- 110 (517)
T PF12569_consen 84 LQLQLSDE---------------------------DVEKLLELYDELAEKY---------PRS----------------- 110 (517)
T ss_pred hhcccccc---------------------------cHHHHHHHHHHHHHhC---------ccc-----------------
Confidence 41100000 0000011111110000 000
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHH-HHHHHHHHHhcCCCCHHH
Q psy3014 205 DGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEE-ALAHYNKAVEFDPTDITF 283 (570)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~p~~~~~ 283 (570)
.+-..+...+..-..|.. +..++...+.. .-|..
T Consensus 111 -------------------------------------------~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPsl 145 (517)
T PF12569_consen 111 -------------------------------------------DAPRRLPLDFLEGDEFKERLDEYLRPQLRK--GVPSL 145 (517)
T ss_pred -------------------------------------------cchhHhhcccCCHHHHHHHHHHHHHHHHhc--CCchH
Confidence 000000000001111222 22333333322 23344
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHh---hcc----------cCh-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC
Q psy3014 284 QNNIAAVYFERKEYDQCIEQYIQKI---ENR----------ADF-KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHR 349 (570)
Q Consensus 284 ~~~la~~~~~~~~~~~A~~~~~~~l---~~~----------~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 349 (570)
...+-.+|....+..-...++.... +.. ... .....+++.++..|...|++++|+.+++++|.
T Consensus 146 F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--- 222 (517)
T PF12569_consen 146 FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--- 222 (517)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---
Confidence 4444444443222222222222221 110 011 11245778889999999999999999999998
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChH
Q psy3014 350 TPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFD 429 (570)
Q Consensus 350 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 429 (570)
..|..++.+...|.++-+.|++.+|..+++.+-.+++.+.-+-...+..+.+.|+.+
T Consensus 223 -----------------------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e 279 (517)
T PF12569_consen 223 -----------------------HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIE 279 (517)
T ss_pred -----------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHH
Confidence 888899999999999999999999999999999999988888888888899999999
Q ss_pred HHHHHHHHHHhcC--CC-------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 430 LGLKDCETCLKLD--PK-------FLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 430 ~A~~~~~~al~~~--p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
+|.+.+..-...+ |. ..+.....|.+|.+.|++..|+..|..+.+..
T Consensus 280 ~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 280 EAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999888776544 21 12333457889999999999999988887753
No 97
>KOG4340|consensus
Probab=99.65 E-value=4.4e-14 Score=119.60 Aligned_cols=360 Identities=12% Similarity=0.141 Sum_probs=242.3
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHH
Q psy3014 21 ALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESIS 100 (570)
Q Consensus 21 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 100 (570)
+.+..+|..||+++..-.+.+|.+...+..+|.||+...+|..|..+|++.-.+.|......+..+..+++.+.+.+|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHh
Q psy3014 101 TYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTT 180 (570)
Q Consensus 101 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (570)
........ +..+.....+..... . +..++......++..|
T Consensus 100 V~~~~~D~----~~L~~~~lqLqaAIk-Y------------------------------se~Dl~g~rsLveQlp----- 139 (459)
T KOG4340|consen 100 VAFLLLDN----PALHSRVLQLQAAIK-Y------------------------------SEGDLPGSRSLVEQLP----- 139 (459)
T ss_pred HHHHhcCC----HHHHHHHHHHHHHHh-c------------------------------ccccCcchHHHHHhcc-----
Confidence 88766543 222221111111100 0 0000000000000000
Q ss_pred hccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHc
Q psy3014 181 KLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKK 260 (570)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 260 (570)
....+....+.|.+.++.
T Consensus 140 --------------------------------------------------------------~en~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 140 --------------------------------------------------------------SENEADGQINLGCLLYKE 157 (459)
T ss_pred --------------------------------------------------------------CCCccchhccchheeecc
Confidence 003455667789999999
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhh----cccCh----------------------
Q psy3014 261 KNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE----NRADF---------------------- 314 (570)
Q Consensus 261 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~----~~~~~---------------------- 314 (570)
|+++.|++-|+.+++...-++..-++++.++++.|+++.|+++...+++ ..|..
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 9999999999999999999999999999999999999999998877764 34432
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC---HHHHH------HHHHHHHHHHHHHHHhcCChhhHHHHHHHH
Q psy3014 315 KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT---PEIRT------LISEMEKKIKEEEKKAYIDPVKAEEAKERG 385 (570)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 385 (570)
....+++...+-++++.++++.|.+.+...-..... +-.+. .-++.-.....+.-.+..+|-..++.-++-
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlL 317 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLL 317 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHH
Confidence 234677788888999999999998877544332221 11111 112233444555556668888888888888
Q ss_pred HHHHHCCCHHHHHHHHHH------------------HHhcCCCCHHH-HHHHHHH---------------HHHh-c----
Q psy3014 386 NELFKNGKYADAVKEYTE------------------AINRNPDDPKY-YSNRAAC---------------YTKL-A---- 426 (570)
Q Consensus 386 ~~~~~~~~~~~A~~~~~~------------------al~~~p~~~~~-~~~la~~---------------~~~~-~---- 426 (570)
.+|.+..-|+-|...+.+ ++-..|.+++. .-.++.+ .... .
T Consensus 318 llyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~ 397 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDE 397 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 888888888877665432 11123333321 1111110 0000 0
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy3014 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485 (570)
Q Consensus 427 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 485 (570)
....|++.|+.++++ ...+.+..++++....+|..+.+.|.+..+...++.....+
T Consensus 398 a~R~ai~~Yd~~LE~---YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~WkLN 453 (459)
T KOG4340|consen 398 AIRKAVNEYDETLEK---YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVWKLN 453 (459)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHhhccccccHHHHHHHHHHHhhhcccceeeec
Confidence 122344455555543 23456677888888888888888888888777665444333
No 98
>KOG3060|consensus
Probab=99.64 E-value=9.2e-14 Score=115.11 Aligned_cols=185 Identities=17% Similarity=0.081 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
+....+-....+....|+.+-|..++++.....|++..+....|..+...|++++|+++|+..++-+|.+ ..++...
T Consensus 50 e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~---~v~~KRK 126 (289)
T KOG3060|consen 50 EIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTD---TVIRKRK 126 (289)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcch---hHHHHHH
Confidence 5566667778888899999999999999999999999999999999999999999999999999999999 7777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
--+...+|+.-+|++.+...++ ..+.+.++|..++.+|+..|+|.+|.-|+++.
T Consensus 127 lAilka~GK~l~aIk~ln~YL~--------------------------~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 127 LAILKAQGKNLEAIKELNEYLD--------------------------KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHH--------------------------HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 7788889999999999999998 88999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhc---ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy3014 405 INRNPDDPKYYSNRAACYTKLA---AFDLGLKDCETCLKLDPKFLKGWIRKGKILQG 458 (570)
Q Consensus 405 l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 458 (570)
+-+.|.++..+..+|.+++-.| ++.-|.++|.++++++|.+..+++.+-.+...
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 9999999999999999998877 57789999999999999888888876655543
No 99
>KOG1130|consensus
Probab=99.64 E-value=1.2e-14 Score=128.44 Aligned_cols=319 Identities=16% Similarity=0.197 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----cchhhchhHHHhcccCHHHHHHHHhchhcc------CCCChh
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN----HILFSNRSAAFAKEGNYEKALEDAEKTISL------KPDWPK 80 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 80 (570)
--.+-..|.-+++.|++...+.+|+.|++....+ ..+|..+|.+|+.+++|++|+++-..-+.+ .-..+.
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 4456778999999999999999999999998776 456889999999999999999876544432 223456
Q ss_pred HHhHHHHHHhhccCHHHHHHHHHHhhccCCC------cHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCC
Q psy3014 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPN------NEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPR 154 (570)
Q Consensus 81 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (570)
+--++|..+.-.|.|++|+.+..+-+.+... ...+++.++.+|...+.....
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~---------------------- 154 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL---------------------- 154 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC----------------------
Confidence 6778999999999999999999887765321 122344444444331110000
Q ss_pred CCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 155 TKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAE 234 (570)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (570)
.- |.+
T Consensus 155 -------------------------------------------~~--------------------------------pee 159 (639)
T KOG1130|consen 155 -------------------------------------------EA--------------------------------PEE 159 (639)
T ss_pred -------------------------------------------CC--------------------------------hhh
Confidence 00 000
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q psy3014 235 PEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT------DITFQNNIAAVYFERKEYDQCIEQYIQKI 308 (570)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~l 308 (570)
. -..+.. -...++.|.++|..-+++... ...++-++|..|+.+|+|+.|+..-+.-+
T Consensus 160 ~-----g~f~~e------------v~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL 222 (639)
T KOG1130|consen 160 K-----GAFNAE------------VTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRL 222 (639)
T ss_pred c-----ccccHH------------HHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHH
Confidence 0 000000 012245566666665555322 23567788888999999999998888777
Q ss_pred hcccCh---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHH
Q psy3014 309 ENRADF---KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERG 385 (570)
Q Consensus 309 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 385 (570)
.+...+ .....++.++|.++.-.|+++.|+++|++.+.+. ++.- .....+...+.+|
T Consensus 223 ~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA---------------ielg-----~r~vEAQscYSLg 282 (639)
T KOG1130|consen 223 EIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA---------------IELG-----NRTVEAQSCYSLG 282 (639)
T ss_pred HHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH---------------HHhc-----chhHHHHHHHHhh
Confidence 554332 2335688889999999999999999998877521 1110 1122345567788
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-----CCC-CHHHHHHHH
Q psy3014 386 NELFKNGKYADAVKEYTEAINRNP------DDPKYYSNRAACYTKLAAFDLGLKDCETCLKL-----DPK-FLKGWIRKG 453 (570)
Q Consensus 386 ~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~~~~l~ 453 (570)
..|.-..++++|+.++.+-+.+.. ....+++.+|..+...|..++|+.+.++.++. +|. ...+..++.
T Consensus 283 Ntytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nls 362 (639)
T KOG1130|consen 283 NTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLS 362 (639)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhH
Confidence 888888888888888887766532 24567888888888888888888888777654 222 234455555
Q ss_pred HHHHhCCCHH
Q psy3014 454 KILQGMQQQS 463 (570)
Q Consensus 454 ~~~~~~g~~~ 463 (570)
..-...|..+
T Consensus 363 dl~~~lG~~d 372 (639)
T KOG1130|consen 363 DLILELGQED 372 (639)
T ss_pred HHHHHhCCCc
Confidence 5555555433
No 100
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.63 E-value=6.9e-12 Score=111.29 Aligned_cols=299 Identities=13% Similarity=0.115 Sum_probs=216.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCC-ChhHHhHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD-WPKGYSRKGSA 88 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 88 (570)
.+......|..-+..|+|.+|.+...+.-+..+....++..-+.+--++|+++.|-.++.++-+..++ .......++.+
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarl 162 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARL 162 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 45666678888899999999999999988887777777777788889999999999999999998554 45678889999
Q ss_pred HhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHH
Q psy3014 89 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMI 168 (570)
Q Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (570)
....|++..|.....++++..|.++.+.....
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~------------------------------------------------ 194 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPRHPEVLRLAL------------------------------------------------ 194 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcCChHHHHHHH------------------------------------------------
Confidence 99999999999999999999999988766443
Q ss_pred HHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHH
Q psy3014 169 KEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAK 248 (570)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (570)
T Consensus 195 -------------------------------------------------------------------------------- 194 (400)
T COG3071 195 -------------------------------------------------------------------------------- 194 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-H--HHHHHHHH--HHHhcCHHHHHH---HHHHHhhcccChhHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDI-T--FQNNIAAV--YFERKEYDQCIE---QYIQKIENRADFKLIAKA 320 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~--~~~~la~~--~~~~~~~~~A~~---~~~~~l~~~~~~~~~~~~ 320 (570)
.+|...|++.....++.+.-+..--+. + -+-..+.. +...++-..+.. .++..-..-..+ +..
T Consensus 195 ------r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~---p~l 265 (400)
T COG3071 195 ------RAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRND---PEL 265 (400)
T ss_pred ------HHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcC---hhH
Confidence 445556777777776666655432221 1 11111111 111122111111 222211112222 556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHH
Q psy3014 321 LQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKE 400 (570)
Q Consensus 321 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 400 (570)
...++.-+...|+.++|.+..+.+++...++.. ... .-...-++...=++.
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---------------------------~~~--~~~l~~~d~~~l~k~ 316 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---------------------------CRL--IPRLRPGDPEPLIKA 316 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---------------------------HHH--HhhcCCCCchHHHHH
Confidence 667777888889999999988888874432221 111 112455777777888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 401 YTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 401 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
.++.++.+|++|..+..+|.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+..+|.+.++.++.+
T Consensus 317 ~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 317 AEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999988888775 456777899999999999999998888744
No 101
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.63 E-value=2.4e-14 Score=115.62 Aligned_cols=125 Identities=19% Similarity=0.324 Sum_probs=115.9
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC
Q psy3014 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF 445 (570)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 445 (570)
.+++++..+|.+......+|..+...|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555559999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy3014 446 LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCS 490 (570)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 490 (570)
+..++.+|.++...|++++|+..|+++++++|++.........+.
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 129 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAE 129 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 999999999999999999999999999999999988765555443
No 102
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.62 E-value=6.5e-14 Score=141.01 Aligned_cols=210 Identities=15% Similarity=0.106 Sum_probs=180.3
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChh-------
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFK------- 315 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~------- 315 (570)
.|.+..++..+...+...+++++|+..++.+++.+|+.+.+++.+|.++...+++.++... .++...+...
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 4578999999999999999999999999999999999999999999999999998887766 5555544431
Q ss_pred ---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q psy3014 316 ---------LIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGN 386 (570)
Q Consensus 316 ---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 386 (570)
....+++.+|.||.++|++++|...|+++++ .+|.++.++.++|.
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~--------------------------~D~~n~~aLNn~AY 158 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK--------------------------ADRDNPEIVKKLAT 158 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh--------------------------cCcccHHHHHHHHH
Confidence 0136888899999999999999999999998 88999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHH--------HH-----
Q psy3014 387 ELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR--------KG----- 453 (570)
Q Consensus 387 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------l~----- 453 (570)
.+... +.++|+.++.+|+.. +...++|..+.+.+.+.+..+|.+.+.+.. +|
T Consensus 159 ~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~ 223 (906)
T PRK14720 159 SYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLV 223 (906)
T ss_pred HHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhH
Confidence 99988 999999999999876 666778889999999999988887554321 23
Q ss_pred -------HHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 454 -------KILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 454 -------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
.+|...++|++++..++.+++++|+|..++..++.|+...-.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~ 272 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYK 272 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHcc
Confidence 678888999999999999999999999999999999996655
No 103
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.62 E-value=1.4e-13 Score=115.40 Aligned_cols=179 Identities=15% Similarity=0.126 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3014 263 FEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFE 342 (570)
Q Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 342 (570)
...+...+-+....+|++..+ ..++..+...|+-+.+.....++...+|.+ ...+..+|......|++..|+..+.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d---~~ll~~~gk~~~~~g~~~~A~~~~r 124 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD---RELLAAQGKNQIRNGNFGEAVSVLR 124 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc---HHHHHHHHHHHHHhcchHHHHHHHH
Confidence 334666666666677777777 777777777777777777777776666666 5556557777777777777777777
Q ss_pred HHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy3014 343 KSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422 (570)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 422 (570)
++.. ..|.+.++|..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..+
T Consensus 125 kA~~--------------------------l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~ 178 (257)
T COG5010 125 KAAR--------------------------LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSL 178 (257)
T ss_pred HHhc--------------------------cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHH
Confidence 7776 66777777777777777777777777777777777777777777777777
Q ss_pred HHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy3014 423 TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEK 471 (570)
Q Consensus 423 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (570)
.-.|+++.|..++..+....+.+..+..+++.+...+|++.+|...-.+
T Consensus 179 ~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7777777777777777766666677777777777777777777655443
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.61 E-value=1.7e-13 Score=114.92 Aligned_cols=172 Identities=15% Similarity=0.095 Sum_probs=159.4
Q ss_pred HHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhh
Q psy3014 298 DQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVK 377 (570)
Q Consensus 298 ~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 377 (570)
..+...+-+....+|++ ..+ ..++..+...|+-+.+.....++.. .+|.+
T Consensus 50 ~~a~~al~~~~~~~p~d---~~i-~~~a~a~~~~G~a~~~l~~~~~~~~--------------------------~~~~d 99 (257)
T COG5010 50 QGAAAALGAAVLRNPED---LSI-AKLATALYLRGDADSSLAVLQKSAI--------------------------AYPKD 99 (257)
T ss_pred hHHHHHHHHHHhcCcch---HHH-HHHHHHHHhcccccchHHHHhhhhc--------------------------cCccc
Confidence 33666666777888888 677 8899999999999999999988777 78888
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQ 457 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 457 (570)
...+..+|...+..|+|..|+..++++....|+++.+|..+|.+|.+.|++++|...|.+++++.|+.+.+..++|..+.
T Consensus 100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~ 179 (257)
T COG5010 100 RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL 179 (257)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHH
Q psy3014 458 GMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 458 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~ 499 (570)
-.|+++.|..++..+...-+.+..+..+|+.+...+|+..++
T Consensus 180 L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 180 LRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 999999999999999999999999999999999999996654
No 105
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.61 E-value=7e-14 Score=109.44 Aligned_cols=119 Identities=8% Similarity=0.022 Sum_probs=108.3
Q ss_pred CC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHH
Q psy3014 373 ID-PVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR 451 (570)
Q Consensus 373 ~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 451 (570)
+. ++.-+..+.+|..++..|++++|...|+-+...+|.++..|++||.++..+|++++|+..|.+++.++|+++.++++
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 67 88889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhhC---CCcHHHHHHHHHHHH
Q psy3014 452 KGKILQGMQQQSKAIDAYEKALELD---ASNAEAVEGYRQCSI 491 (570)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~ 491 (570)
.|.|++..|+.+.|.+.|+.++... |.+..+...-...+.
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQ 151 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 9999999999999999999999987 455444444333333
No 106
>KOG1915|consensus
Probab=99.60 E-value=4.5e-11 Score=108.17 Aligned_cols=402 Identities=13% Similarity=0.053 Sum_probs=252.1
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
..+...|..-+..-++..+..-|...+++|+.+-|.--..|+.....-..+|+...|.+.|++.++..|+ ..+|.....
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~ 182 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIK 182 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHH
Confidence 4456678888999999999999999999999999998889999888888999999999999999999996 577888888
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQM 167 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (570)
.-...+..+.|...|++.+-..|+ ...|...+..-...++...+. ..+..+
T Consensus 183 fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR----------------------------~VyerA 233 (677)
T KOG1915|consen 183 FELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALAR----------------------------SVYERA 233 (677)
T ss_pred HHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHH----------------------------HHHHHH
Confidence 888888999999999999988875 344444444433311111000 111111
Q ss_pred HHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHH
Q psy3014 168 IKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSA 247 (570)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (570)
+..+..+..... +...+..+-.. ...-..+
T Consensus 234 ie~~~~d~~~e~-------lfvaFA~fEe~-------------------------------------------qkE~ERa 263 (677)
T KOG1915|consen 234 IEFLGDDEEAEI-------LFVAFAEFEER-------------------------------------------QKEYERA 263 (677)
T ss_pred HHHhhhHHHHHH-------HHHHHHHHHHH-------------------------------------------HHHHHHH
Confidence 111111100000 00000000000 0000111
Q ss_pred HHHHHHHHHHH-----------------HccC---HHHHH-----HHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Q psy3014 248 KKEKELGNEAY-----------------KKKN---FEEAL-----AHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIE 302 (570)
Q Consensus 248 ~~~~~la~~~~-----------------~~~~---~~~A~-----~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 302 (570)
...+..|.-.. +-|+ .++++ -.|++.+..+|.|.++|+..-.+-...|+.+.-.+
T Consensus 264 r~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire 343 (677)
T KOG1915|consen 264 RFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRE 343 (677)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHH
Confidence 11122221111 1222 12222 23455566677777788777777777788888888
Q ss_pred HHHHHhhcccChhH----HHHHHHHHHHHH---HHcCCHHHHHHHHHHHhcccCCH------------HHHHHHHHHHHH
Q psy3014 303 QYIQKIENRADFKL----IAKALQRIGNCY---KKMEDWKNAKVYFEKSMSEHRTP------------EIRTLISEMEKK 363 (570)
Q Consensus 303 ~~~~~l~~~~~~~~----~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~~~~~~a 363 (570)
.|++++...|.... .-.+|.-+-.++ ....+.+.+...|+.++++-|.. .......++..|
T Consensus 344 ~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~A 423 (677)
T KOG1915|consen 344 TYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGA 423 (677)
T ss_pred HHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHH
Confidence 88888766654311 111222222211 24567777777888877776652 122334566777
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Q psy3014 364 IKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443 (570)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 443 (570)
...+-.++...|.+- .......+-.+.++++.+...|++-++..|.+..+|...|.+-..+|+.+.|...|+-|+....
T Consensus 424 RkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 424 RKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 777777777777643 3334445556777888888888888888888888888888888888888888888888877543
Q ss_pred CCHH--HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy3014 444 KFLK--GWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSI 491 (570)
Q Consensus 444 ~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 491 (570)
-+.. .|-.....-...|.++.|...|++.|+..+... +|...+....
T Consensus 503 ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 503 LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 3322 233344445667888888888888888776554 7766666555
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.59 E-value=3.2e-13 Score=115.02 Aligned_cols=155 Identities=13% Similarity=0.188 Sum_probs=132.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME 332 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 332 (570)
-+..|+..|+++......++.. +|.. -+...++.++++..++++++.+|++ ...|..+|.+|...|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~---~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQN---SEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCC
Confidence 4456888999888655543221 2221 1113677899999999999999999 999999999999999
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH-HHCCC--HHHHHHHHHHHHhcCC
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNEL-FKNGK--YADAVKEYTEAINRNP 409 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~A~~~~~~al~~~p 409 (570)
++++|+..|++++. ..|+++.++..+|.++ ...|+ +++|...++++++.+|
T Consensus 88 ~~~~A~~a~~~Al~--------------------------l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP 141 (198)
T PRK10370 88 DYDNALLAYRQALQ--------------------------LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA 141 (198)
T ss_pred CHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 99999999999999 8999999999999975 67777 5999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHH
Q psy3014 410 DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLK 447 (570)
Q Consensus 410 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 447 (570)
+++.+++.+|.++...|++++|+..|+++++..|.+..
T Consensus 142 ~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 142 NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 99999999999999999999999999999999887543
No 108
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=2.3e-11 Score=108.00 Aligned_cols=285 Identities=14% Similarity=0.076 Sum_probs=214.1
Q ss_pred chhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhc
Q psy3014 50 NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129 (570)
Q Consensus 50 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 129 (570)
.-|..-+..|+|.+|.+...++-+..+.-.-++..-+.+-..+|+++.|-.++.++-+..+++.-
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l--------------- 153 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL--------------- 153 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH---------------
Confidence 34555667799999999999988888777778888888889999999999999999888554322
Q ss_pred cCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCc
Q psy3014 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAE 209 (570)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (570)
T Consensus 154 -------------------------------------------------------------------------------- 153 (400)
T COG3071 154 -------------------------------------------------------------------------------- 153 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 210 EMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAA 289 (570)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 289 (570)
......+.+....|+++.|..-..++++..|.++.+......
T Consensus 154 --------------------------------------~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r 195 (400)
T COG3071 154 --------------------------------------AVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALR 195 (400)
T ss_pred --------------------------------------HHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHH
Confidence 122346777778999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH--HHHcCCHHHHHH---HHHHHhcccCCHHHHHHHHHHHHHH
Q psy3014 290 VYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC--YKKMEDWKNAKV---YFEKSMSEHRTPEIRTLISEMEKKI 364 (570)
Q Consensus 290 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~---~~~~~~~~~~~~~~~~~~~~~~~a~ 364 (570)
+|...|+|.....++.+.-+..--+.....-+-+.+.. +....+-..+.. +.+..-.
T Consensus 196 ~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr------------------ 257 (400)
T COG3071 196 AYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR------------------ 257 (400)
T ss_pred HHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH------------------
Confidence 99999999999998888775533221112222222211 111111111111 2211111
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC
Q psy3014 365 KEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444 (570)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 444 (570)
.-..++.....++.-+...|+.++|.+...++++..-+. .....++ ...-+++..=++..++.++..|+
T Consensus 258 --------~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 258 --------KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-RLCRLIP--RLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred --------HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-hHHHHHh--hcCCCCchHHHHHHHHHHHhCCC
Confidence 223456777788889999999999999999999876433 3222222 34568899999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCH
Q psy3014 445 FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 497 (570)
++..+..+|.++.+.+.|.+|..+|+.+++..|+ ...+..++.++.++|+..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPE 378 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChH
Confidence 9999999999999999999999999999999986 677889999999999854
No 109
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.56 E-value=2.6e-13 Score=122.19 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHH
Q psy3014 393 KYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQ-SKAIDAYEK 471 (570)
Q Consensus 393 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 471 (570)
++.+|...|++..+..+.++..++.+|.++..+|+|++|...+++++..+|+++.++.+++.+...+|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 3555555555555554555555555555555555555555555555555555555555555555555555 344445555
Q ss_pred HHhhCCCcHHH
Q psy3014 472 ALELDASNAEA 482 (570)
Q Consensus 472 al~~~p~~~~~ 482 (570)
....+|+++.+
T Consensus 262 L~~~~p~h~~~ 272 (290)
T PF04733_consen 262 LKQSNPNHPLV 272 (290)
T ss_dssp CHHHTTTSHHH
T ss_pred HHHhCCCChHH
Confidence 55555555443
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.56 E-value=5.1e-13 Score=133.96 Aligned_cols=135 Identities=9% Similarity=0.013 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
+.++..||.+....|.+++|...++.+++ ..|++..++..++.++.+.+++++|
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--------------------------~~Pd~~~a~~~~a~~L~~~~~~eeA 139 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--------------------------RFPDSSEAFILMLRGVKRQQGIEAG 139 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHhccHHHH
Confidence 55666666666666666666666666665 5566666666666666666666666
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
+..+++++..+|+++..++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...
T Consensus 140 ~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 140 RAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666666666666665666666666666666666666666666666665544
Q ss_pred C
Q psy3014 478 S 478 (570)
Q Consensus 478 ~ 478 (570)
+
T Consensus 220 ~ 220 (694)
T PRK15179 220 D 220 (694)
T ss_pred c
Confidence 3
No 111
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.55 E-value=2.8e-13 Score=122.01 Aligned_cols=167 Identities=13% Similarity=0.113 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
......|.++...|++++|++.+.+. .+.++......++..+++++.|.+.++.+.+.+.+. .-+....+++
T Consensus 103 ~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~---~l~qLa~awv 174 (290)
T PF04733_consen 103 IVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDS---ILTQLAEAWV 174 (290)
T ss_dssp HHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcH---HHHHHHHHHH
Confidence 34455678888899999999998864 678888889999999999999999999998888776 5555555566
Q ss_pred HHHcC--CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q psy3014 328 YKKME--DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAI 405 (570)
Q Consensus 328 ~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 405 (570)
....| ++.+|...|+.... ..+..+..+..++.+++.+|+|++|...+.+++
T Consensus 175 ~l~~g~e~~~~A~y~f~El~~--------------------------~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 175 NLATGGEKYQDAFYIFEELSD--------------------------KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHTTTCCCHHHHHHHHHHC--------------------------CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHhCchhHHHHHHHHHHHHh--------------------------ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 65555 58999999999877 566778889999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCh-HHHHHHHHHHHhcCCCCHHH
Q psy3014 406 NRNPDDPKYYSNRAACYTKLAAF-DLGLKDCETCLKLDPKFLKG 448 (570)
Q Consensus 406 ~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~~ 448 (570)
..+|+++.++.+++.+...+|+. +.+.+++.+....+|+++..
T Consensus 229 ~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 229 EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999998 66777888888889998754
No 112
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.54 E-value=1.2e-13 Score=108.14 Aligned_cols=106 Identities=8% Similarity=0.043 Sum_probs=101.5
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
++..+.++..|..++..|++++|...|+-+...+|.++..|++||.|+..+|+|++|+..|.+++.++|+++.+++..|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNE 113 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~ 113 (570)
|++..|+.+.|.+.|+.++.....++
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccCh
Confidence 99999999999999999999874443
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.53 E-value=1.2e-12 Score=131.27 Aligned_cols=173 Identities=13% Similarity=0.024 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKA---VEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~a---l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
+.+..+-.+....+....+...+-++ ....|.++.++..+|.+....|.+++|...++.+++..|++ ..++..+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~---~~a~~~~ 126 (694)
T PRK15179 50 ELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS---SEAFILM 126 (694)
T ss_pred HHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc---HHHHHHH
Confidence 34444455555555555544444444 45589999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
+.++.+.+++++|+..+++++. .+|+++..++.+|.++...|++++|+.+|+++
T Consensus 127 a~~L~~~~~~eeA~~~~~~~l~--------------------------~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 127 LRGVKRQQGIEAGRAEIELYFS--------------------------GGSSSAREILLEAKSWDEIGQSEQADACFERL 180 (694)
T ss_pred HHHHHHhccHHHHHHHHHHHhh--------------------------cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 9999999999999999999999 89999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHH
Q psy3014 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 405 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 449 (570)
+..+|+++.++..+|.++...|+.++|...|+++++....-...+
T Consensus 181 ~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 181 SRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 999999999999999999999999999999999999876655543
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.53 E-value=1.3e-11 Score=133.47 Aligned_cols=357 Identities=12% Similarity=0.014 Sum_probs=223.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-ccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCC---------Chh
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAI-KLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD---------WPK 80 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~ 80 (570)
+..+...|......|++..+..++..+- .....++......+.++...|++++|...+..+....+. ...
T Consensus 374 ~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~ 453 (903)
T PRK04841 374 RDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAE 453 (903)
T ss_pred HHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHH
Confidence 3555566777777777777666665431 112234555566777777778888887777776543221 123
Q ss_pred HHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHH-----HHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCC
Q psy3014 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ-----MKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRT 155 (570)
Q Consensus 81 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (570)
....+|.++...|++++|...+++++...+.... +...++.++...++
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~--------------------------- 506 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE--------------------------- 506 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC---------------------------
Confidence 4455677777888888888888887775444322 11222222222111
Q ss_pred CCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 156 KPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEP 235 (570)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (570)
+..+...+.........
T Consensus 507 --------~~~A~~~~~~al~~~~~------------------------------------------------------- 523 (903)
T PRK04841 507 --------LARALAMMQQTEQMARQ------------------------------------------------------- 523 (903)
T ss_pred --------HHHHHHHHHHHHHHHhh-------------------------------------------------------
Confidence 11111100000000000
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy3014 236 EDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDP--------TDITFQNNIAAVYFERKEYDQCIEQYIQK 307 (570)
Q Consensus 236 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 307 (570)
..........+..+|.++...|++++|...+++++.... .....+..+|.++...|++++|...+.++
T Consensus 524 ----~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 599 (903)
T PRK04841 524 ----HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKG 599 (903)
T ss_pred ----hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 000012344667789999999999999999999988621 12334567889999999999999999999
Q ss_pred hhcccC--hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh-hHHHHHHH
Q psy3014 308 IENRAD--FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV-KAEEAKER 384 (570)
Q Consensus 308 l~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 384 (570)
+..... ......++..+|.++...|+++.|...+.++........ .... ........
T Consensus 600 l~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~--------------------~~~~~~~~~~~~~ 659 (903)
T PRK04841 600 LEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR--------------------YHSDWIANADKVR 659 (903)
T ss_pred HHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc--------------------ccHhHhhHHHHHH
Confidence 865321 112356777789999999999999999999876321100 0000 00111112
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHhcChHHHHHHHHHHHhcCC------CCHHHHHHHHH
Q psy3014 385 GNELFKNGKYADAVKEYTEAINRNPDDPK----YYSNRAACYTKLAAFDLGLKDCETCLKLDP------KFLKGWIRKGK 454 (570)
Q Consensus 385 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~ 454 (570)
...+...|+.+.|..++.......+.... .+..+|.++...|++++|...+++++.... ....++..+|.
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 24445578888888887776543322221 256788899999999999999999887521 23456778899
Q ss_pred HHHhCCCHHHHHHHHHHHHhhCCCcHH
Q psy3014 455 ILQGMQQQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 455 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 481 (570)
++...|+.++|...+.+++++......
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 999999999999999999988755433
No 115
>KOG1130|consensus
Probab=99.53 E-value=4e-13 Score=118.95 Aligned_cols=226 Identities=17% Similarity=0.238 Sum_probs=170.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhcC--------------------HHHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDP------TDITFQNNIAAVYFERKE--------------------YDQCIEQY 304 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~--------------------~~~A~~~~ 304 (570)
-++|..+.-.|.|++|+.+..+-+.+.. ....+++++|.+|...|+ ++.|.++|
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 3588899999999999999888776532 236789999999988765 34555666
Q ss_pred HHHhhcccCh---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHH
Q psy3014 305 IQKIENRADF---KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEA 381 (570)
Q Consensus 305 ~~~l~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 381 (570)
..-+++.... .....++-++|..|+.+|+|+.|+..-+.-+.+... .- .....-.++
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e---------------fG-----DrAaeRRA~ 238 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE---------------FG-----DRAAERRAH 238 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH---------------hh-----hHHHHHHhh
Confidence 5555443222 123567888999999999999999888766652211 00 111234577
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC----C--CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC------CCHHHH
Q psy3014 382 KERGNELFKNGKYADAVKEYTEAINRN----P--DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP------KFLKGW 449 (570)
Q Consensus 382 ~~~~~~~~~~~~~~~A~~~~~~al~~~----p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~ 449 (570)
.++|.++.-.|+++.|+++|+..+.+. . -.+...+.+|..|.-..++++|+.++.+-+.+.. ....++
T Consensus 239 sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Rac 318 (639)
T KOG1130|consen 239 SNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRAC 318 (639)
T ss_pred cccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 889999999999999999999887542 2 2356788999999999999999999998776632 346788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC-----CC-cHHHHHHHHHHHHHhcCC
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKALELD-----AS-NAEAVEGYRQCSIAVSSN 496 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~l~~~~~~~~~~ 496 (570)
+.+|..+..+|..++|+.+.++.+++. |. ...+..+|......+|..
T Consensus 319 wSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 319 WSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence 899999999999999999988887653 32 556788899999888873
No 116
>KOG1128|consensus
Probab=99.53 E-value=3.7e-13 Score=127.93 Aligned_cols=220 Identities=15% Similarity=0.182 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
........++..+...|-...|+..|++ +..|-....||...|+..+|..+..+-++.+|+ +..|..+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d----~~lyc~L 463 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPD----PRLYCLL 463 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCc----chhHHHh
Confidence 3455667789999999999999999998 477888899999999999999999999884444 7888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCC--HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRT--PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
|.+.....-|++|.++.+........ +......++++++...++..+.++|-....|+.+|.+..+.++++.|..+|.
T Consensus 464 GDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 98888877778887777665443111 1112234678888888888888888888888888888888888888888888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 403 EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
.++..+|++..+|++++.+|...|+-.+|...++++++.+-+++..|-+.-.+....|.+++|++.|.+.+.+.
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888887654
No 117
>KOG1128|consensus
Probab=99.52 E-value=1.3e-12 Score=124.28 Aligned_cols=210 Identities=14% Similarity=0.213 Sum_probs=191.0
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHH
Q psy3014 278 PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLI 357 (570)
Q Consensus 278 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 357 (570)
|........++.++...|-...|+.++++ ...|-....||...|+..+|.....+-++..+++..+-.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er-----------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER-----------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh-----------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHh
Confidence 33445667899999999999999999988 5677788899999999999999999999988999999999
Q ss_pred HHHHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHH
Q psy3014 358 SEMEKKIKEEEKKAYIDP-VKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCE 436 (570)
Q Consensus 358 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 436 (570)
|++-.-...++++.+... .+..+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.|.++|.
T Consensus 464 GDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 988877788888777543 3566777888888889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHH
Q psy3014 437 TCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 437 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e 498 (570)
.++.++|++..+|.+++..|.+.|+..+|...++.|++-+-++..+|.++..+....|..++
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999665
No 118
>KOG2047|consensus
Probab=99.51 E-value=1.1e-09 Score=103.01 Aligned_cols=409 Identities=12% Similarity=0.106 Sum_probs=260.3
Q ss_pred HHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCC--ChhHHhHHHHHHhhccCHHHHHHHHHH
Q psy3014 27 FIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD--WPKGYSRKGSALSYLGRYKESISTYEE 104 (570)
Q Consensus 27 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 104 (570)
|+.--.+|++++-.-.+-+..|.......+.+|+...-...|.+++..-|- +...|-..-......|-++-++..|++
T Consensus 84 ~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrR 163 (835)
T KOG2047|consen 84 YESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRR 163 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHH
Confidence 334445566666555556778888888888889988888899888887764 344555555666677778889999999
Q ss_pred hhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccC
Q psy3014 105 GLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKD 184 (570)
Q Consensus 105 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (570)
.++.+|...+-+.. .+.......++...+...+.++.+...- .-....-+......+.++|......-
T Consensus 164 YLk~~P~~~eeyie---~L~~~d~~~eaa~~la~vln~d~f~sk~-------gkSn~qlw~elcdlis~~p~~~~sln-- 231 (835)
T KOG2047|consen 164 YLKVAPEAREEYIE---YLAKSDRLDEAAQRLATVLNQDEFVSKK-------GKSNHQLWLELCDLISQNPDKVQSLN-- 231 (835)
T ss_pred HHhcCHHHHHHHHH---HHHhccchHHHHHHHHHhcCchhhhhhc-------ccchhhHHHHHHHHHHhCcchhcccC--
Confidence 99998876432221 1111122222333333333222221110 00011122233333333333222111
Q ss_pred ccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHH
Q psy3014 185 PRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFE 264 (570)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 264 (570)
+-..+....+.. ...-...|..+|..|.+.|.++
T Consensus 232 --vdaiiR~gi~rf--------------------------------------------tDq~g~Lw~SLAdYYIr~g~~e 265 (835)
T KOG2047|consen 232 --VDAIIRGGIRRF--------------------------------------------TDQLGFLWCSLADYYIRSGLFE 265 (835)
T ss_pred --HHHHHHhhcccC--------------------------------------------cHHHHHHHHHHHHHHHHhhhhH
Confidence 111111101100 1145678889999999999999
Q ss_pred HHHHHHHHHHhc-------------------------------------------------------------------C
Q psy3014 265 EALAHYNKAVEF-------------------------------------------------------------------D 277 (570)
Q Consensus 265 ~A~~~~~~al~~-------------------------------------------------------------------~ 277 (570)
+|...|++++.. +
T Consensus 266 karDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn 345 (835)
T KOG2047|consen 266 KARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence 999999998754 2
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhh-cccCh--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC----
Q psy3014 278 PTDITFQNNIAAVYFERKEYDQCIEQYIQKIE-NRADF--KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT---- 350 (570)
Q Consensus 278 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---- 350 (570)
|++..-|.... -+..|+..+-+..|..+++ .+|.- ......|..+|..|...|+.+.|...|+++....-.
T Consensus 346 ~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d 423 (835)
T KOG2047|consen 346 PHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED 423 (835)
T ss_pred CccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH
Confidence 22223232222 2234667777888888773 34432 123678899999999999999999999999875432
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHhcCChh------------------hHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 351 --------PEIRTLISEMEKKIKEEEKKAYIDPV------------------KAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 351 --------~~~~~~~~~~~~a~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
++......+++.|+...+.+...... +..+|..++......|-++.....|++.
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri 503 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI 503 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 12334445678888887776653211 3557778888888899999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC--CCCHHHHHHH---HHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD--PKFLKGWIRK---GKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 405 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l---~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
+.+.--.|....+.|..+....-+++|.+.|++.+.+. |.-.+.|... ..--+.-...+.|...|++|++..|..
T Consensus 504 idLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~ 583 (835)
T KOG2047|consen 504 IDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPE 583 (835)
T ss_pred HHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Confidence 99988889999999999999999999999999999886 4444555442 222333457899999999999998832
Q ss_pred --HHHHHHHHHHHHHhcC
Q psy3014 480 --AEAVEGYRQCSIAVSS 495 (570)
Q Consensus 480 --~~~~~~l~~~~~~~~~ 495 (570)
..++..++......|-
T Consensus 584 ~aKtiyLlYA~lEEe~GL 601 (835)
T KOG2047|consen 584 HAKTIYLLYAKLEEEHGL 601 (835)
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 2344455555555554
No 119
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.50 E-value=1.6e-10 Score=125.08 Aligned_cols=371 Identities=11% Similarity=-0.027 Sum_probs=241.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhc-cCCCChhHHhHHHHHH
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS-LKPDWPKGYSRKGSAL 89 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~ 89 (570)
...+...|..+...|++.+|+..+..+-.. +.-.......+......|++..+...+..+-. ....++.....++.++
T Consensus 341 ~~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 341 PELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 455566677788899999999877665221 11234455567778888999887777765411 1123455667788899
Q ss_pred hhccCHHHHHHHHHHhhccCCC-----cHHH----HHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCC
Q psy3014 90 SYLGRYKESISTYEEGLKLDPN-----NEQM----KEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS 160 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~-----~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (570)
...|++++|...+..+....+. .... ...++.++...+
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g--------------------------------- 466 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDG--------------------------------- 466 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCC---------------------------------
Confidence 9999999999999988764332 1111 111111111100
Q ss_pred ChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q psy3014 161 DPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNL 240 (570)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (570)
++..+...... .+... + .
T Consensus 467 --~~~~A~~~~~~--------------------al~~~---------------------------------~-------~ 484 (903)
T PRK04841 467 --DPEEAERLAEL--------------------ALAEL---------------------------------P-------L 484 (903)
T ss_pred --CHHHHHHHHHH--------------------HHhcC---------------------------------C-------C
Confidence 01111100000 00000 0 0
Q ss_pred chhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD------ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF 314 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 314 (570)
........+...+|.++...|++++|...+++++...... ..++..+|.++...|++++|...+++++......
T Consensus 485 ~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 485 TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 0001233456678889999999999999999998763321 2455778899999999999999999988653211
Q ss_pred -----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q psy3014 315 -----KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELF 389 (570)
Q Consensus 315 -----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (570)
......+..+|.++...|++++|...+.+++...... ..+.....+..+|.++.
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~---------------------~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY---------------------QPQQQLQCLAMLAKISL 623 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc---------------------CchHHHHHHHHHHHHHH
Confidence 1123446678888999999999999999887632210 11223456677899999
Q ss_pred HCCCHHHHHHHHHHHHhcCCCC---HHHH----HHHHHHHHHhcChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHh
Q psy3014 390 KNGKYADAVKEYTEAINRNPDD---PKYY----SNRAACYTKLAAFDLGLKDCETCLKLDPKFLK----GWIRKGKILQG 458 (570)
Q Consensus 390 ~~~~~~~A~~~~~~al~~~p~~---~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~ 458 (570)
..|++++|...+.++....+.. .... ......+...|+.+.|...+.......+.... .+..+|.++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 9999999999999997753321 1111 11234455678999999998776653322221 24678999999
Q ss_pred CCCHHHHHHHHHHHHhhC------CCcHHHHHHHHHHHHHhcCCHH
Q psy3014 459 MQQQSKAIDAYEKALELD------ASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 459 ~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~e 498 (570)
.|++++|...+++++... +....++..++.++...|+..+
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~ 749 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSE 749 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999863 2334577889999999998543
No 120
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.49 E-value=1.3e-12 Score=105.55 Aligned_cols=116 Identities=13% Similarity=0.233 Sum_probs=61.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy3014 269 HYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEH 348 (570)
Q Consensus 269 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 348 (570)
.|++++..+|++....+.+|.++...|++++|+..+++++..+|++ ..++..+|.++...|++++|+..+++++.
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~-- 79 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAA-- 79 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 3445555555555555555555555555555555555555555554 45555555555555555555555555554
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Q psy3014 349 RTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPK 413 (570)
Q Consensus 349 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 413 (570)
.+|.++..++.+|.++...|++++|+..|+++++.+|++..
T Consensus 80 ------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 80 ------------------------LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred ------------------------cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44445555555555555555555555555555555554433
No 121
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.48 E-value=1.3e-12 Score=122.57 Aligned_cols=115 Identities=26% Similarity=0.494 Sum_probs=110.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q psy3014 381 AKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQ 460 (570)
Q Consensus 381 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 460 (570)
+...|..++..|+|++|+.+|+++++.+|+++.+++++|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 461 QQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 461 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
++++|+..|+++++++|+++.+...++.|..++..
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888854
No 122
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.46 E-value=5.4e-13 Score=125.07 Aligned_cols=115 Identities=34% Similarity=0.560 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhh
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSY 91 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 91 (570)
..+...|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..+++++.++|+++.+++.+|.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 34788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q psy3014 92 LGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 126 (570)
Q Consensus 92 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 126 (570)
+|++++|+..|+++++++|++..+...+..+....
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888886663
No 123
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.46 E-value=2.3e-11 Score=106.99 Aligned_cols=107 Identities=16% Similarity=0.119 Sum_probs=92.4
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchh---hchhHHHhcccCHHHHHHHHhchhccCCCCh---hHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILF---SNRSAAFAKEGNYEKALEDAEKTISLKPDWP---KGY 82 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 82 (570)
.+++.++..|..++..|+|++|+..|++++...|..+.+. +.+|.++++.+++++|+..+++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3678899999999999999999999999999999986554 8999999999999999999999999998864 678
Q ss_pred hHHHHHHhhcc------------------CHHHHHHHHHHhhccCCCcHHH
Q psy3014 83 SRKGSALSYLG------------------RYKESISTYEEGLKLDPNNEQM 115 (570)
Q Consensus 83 ~~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~ 115 (570)
+.+|.++...+ ...+|+..|++.++..|+..-+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya 160 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT 160 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH
Confidence 99998865554 1357889999999999987644
No 124
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.42 E-value=9.3e-11 Score=103.21 Aligned_cols=182 Identities=13% Similarity=0.095 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ---NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
.+..++..|..++..|++++|+..|++++...|..+.+. +.+|.++++.+++++|+..+++.++..|+++....+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 466788899999999999999999999999999986654 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC------------------HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHH
Q psy3014 323 RIGNCYKKMED------------------WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKER 384 (570)
Q Consensus 323 ~l~~~~~~~~~------------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 384 (570)
.+|.++...+. ..+|+..|++.+...|+..........- ......-..--+..
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl---------~~l~~~la~~e~~i 181 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRL---------VFLKDRLAKYELSV 181 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHH---------HHHHHHHHHHHHHH
Confidence 99988655431 2467788888888777643221111100 00111112223355
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcChHHHHHHHH
Q psy3014 385 GNELFKNGKYADAVKEYTEAINRNPDD---PKYYSNRAACYTKLAAFDLGLKDCE 436 (570)
Q Consensus 385 ~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~ 436 (570)
|..|.+.|.|..|+.-++.+++..|+. .+++..++..|..+|..++|.....
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 666666777777777777777666653 4466666666666666666665543
No 125
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.42 E-value=2e-11 Score=105.11 Aligned_cols=108 Identities=26% Similarity=0.283 Sum_probs=88.4
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchhhchhHHHhcccCHHHHHHHHhchhccCCCCh---hHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWP---KGY 82 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 82 (570)
.+++.++..|..++..|+|.+|+..|++++...|.+ +.+.+.+|.+++..|++++|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 467899999999999999999999999999998886 56789999999999999999999999999999865 588
Q ss_pred hHHHHHHhhcc-----------CHHHHHHHHHHhhccCCCcHHHH
Q psy3014 83 SRKGSALSYLG-----------RYKESISTYEEGLKLDPNNEQMK 116 (570)
Q Consensus 83 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~ 116 (570)
+.+|.++..+. ...+|+..|+..+...|++..+.
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~ 127 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE 127 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH
Confidence 99999876653 34589999999999999876543
No 126
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.42 E-value=4.9e-11 Score=102.64 Aligned_cols=178 Identities=22% Similarity=0.268 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKAL 321 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 321 (570)
..+..++..|..++..|+|.+|+..|++++...|.. +.+.+.+|.+++..|+++.|+..+++.++..|+++....++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 467889999999999999999999999999998876 67889999999999999999999999999999999889999
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy3014 322 QRIGNCYKKME-----------DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK 390 (570)
Q Consensus 322 ~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (570)
+.+|.++.... ...+|+..|+..+...|+..........-.. +......--+..|..|++
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~---------l~~~la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAE---------LRNRLAEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHH---------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 99999877653 2347788888888877764322111110000 111122233456777777
Q ss_pred CCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcChHHH
Q psy3014 391 NGKYADAVKEYTEAINRNPDDP---KYYSNRAACYTKLAAFDLG 431 (570)
Q Consensus 391 ~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A 431 (570)
.|.|..|+..++.+++..|+.+ .++..++.+|.++|..+.|
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777777777777777777753 4566777777777776643
No 127
>KOG4648|consensus
Probab=99.41 E-value=1.6e-13 Score=118.53 Aligned_cols=238 Identities=19% Similarity=0.195 Sum_probs=170.2
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSA 88 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 88 (570)
.....+...|+.||.+|.|++||.+|.+++..+|.++..+.++|.+|++++.|..|...|+.++.++.....+|-++|.+
T Consensus 95 ~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 95 KKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA 174 (536)
T ss_pred HhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 34455789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHH
Q psy3014 89 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMI 168 (570)
Q Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (570)
-..+|...+|.+.++.++.+.|++.+....++.+........
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I-------------------------------------- 216 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKI-------------------------------------- 216 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhH--------------------------------------
Confidence 999999999999999999999998887766555432200000
Q ss_pred HHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHH
Q psy3014 169 KEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAK 248 (570)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (570)
.....++. ..+ .......-
T Consensus 217 -~~KsT~G~----------------------------~~A--------------------------------~Q~~~Q~l 235 (536)
T KOG4648|consen 217 -ATKSTPGF----------------------------TPA--------------------------------RQGMIQIL 235 (536)
T ss_pred -HhhcCCCC----------------------------Ccc--------------------------------ccchhhhc
Confidence 00000000 000 00000000
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCY 328 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 328 (570)
.....|..+...|.++.++.++.+-+..+..+...... +..+.+..+++.++....+++..+|.. .......|.+-
T Consensus 236 ~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~---~~~~s~~~~A~ 311 (536)
T KOG4648|consen 236 PIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTP---MPDTSGPPKAE 311 (536)
T ss_pred cccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCc---CcccCCCchhH
Confidence 01124667777888888888888777665555444334 666777778888888888877776665 34444444444
Q ss_pred HHcCCHHHHHHHHHHHhcccC
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHR 349 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~ 349 (570)
.-.|...++...++.++...|
T Consensus 312 T~~~~~~E~K~~~~T~~~~~P 332 (536)
T KOG4648|consen 312 TIAKTSKEVKPTKQTAVKVAP 332 (536)
T ss_pred HHHhhhhhcCcchhheeeecc
Confidence 455566666666776666443
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.40 E-value=1.4e-10 Score=106.07 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHH
Q psy3014 278 PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLI 357 (570)
Q Consensus 278 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 357 (570)
|....+++..+..++..|++++|...+...+...|++ +..+...+.++...++..+|.+.+++++.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N---~~~~~~~~~i~~~~nk~~~A~e~~~kal~----------- 368 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN---PYYLELAGDILLEANKAKEAIERLKKALA----------- 368 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----------
Confidence 5556666666666666666666666666666666666 55666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHH
Q psy3014 358 SEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437 (570)
Q Consensus 358 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 437 (570)
.+|..+..+.++|.++++.|++.+|+..++..+..+|+++..|..+|..|..+|+..+|.
T Consensus 369 ---------------l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~----- 428 (484)
T COG4783 369 ---------------LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL----- 428 (484)
T ss_pred ---------------cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH-----
Confidence 566666666666666666666666666666666666666666666666666666554443
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 438 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
...+..+...|++++|+..+..+.+..
T Consensus 429 ------------~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 429 ------------LARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred ------------HHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 234455555666666666666666554
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.38 E-value=1.6e-10 Score=105.76 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
..+++..+..+...|++++|+..+...+. ..|+++..+...+.+++..|+..+|
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--------------------------~~P~N~~~~~~~~~i~~~~nk~~~A 359 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIA--------------------------AQPDNPYYLELAGDILLEANKAKEA 359 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCChHHH
Confidence 67778888888888888888888888777 7788888888888888888888888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
.+.+++++..+|+.+..+.++|..+.+.|++.+|+..++..+..+|+++..|..+|..|..+|+..+|...+-..+.+..
T Consensus 360 ~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G 439 (484)
T COG4783 360 IERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAG 439 (484)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred CcHHHHHHHHHHHHHhcC
Q psy3014 478 SNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 478 ~~~~~~~~l~~~~~~~~~ 495 (570)
.-..+...+..+..+.+.
T Consensus 440 ~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 440 RLEQAIIFLMRASQQVKL 457 (484)
T ss_pred CHHHHHHHHHHHHHhccC
Confidence 777777777777776654
No 130
>KOG4340|consensus
Probab=99.38 E-value=4.5e-10 Score=95.72 Aligned_cols=318 Identities=13% Similarity=0.103 Sum_probs=219.2
Q ss_pred HhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCc
Q psy3014 55 FAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGD 134 (570)
Q Consensus 55 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 134 (570)
+++..+|..|++++..-.+.+|.+..++..+|.||+...++..|..+|++.-...|.........+..+.......+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD--- 96 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD--- 96 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH---
Confidence 37888999999999999999999999999999999999999999999999999999887766655554443110000
Q ss_pred cccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCC
Q psy3014 135 PFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVD 214 (570)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (570)
.......+..+
T Consensus 97 -----------------------------ALrV~~~~~D~---------------------------------------- 107 (459)
T KOG4340|consen 97 -----------------------------ALRVAFLLLDN---------------------------------------- 107 (459)
T ss_pred -----------------------------HHHHHHHhcCC----------------------------------------
Confidence 00000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy3014 215 PQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFER 294 (570)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 294 (570)
..-..+.....+-+.+..+++..+....++.-. .++.....+.|.+.++.
T Consensus 108 ----------------------------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 108 ----------------------------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKE 157 (459)
T ss_pred ----------------------------HHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeecc
Confidence 002234445556677778888888777665321 15677888899999999
Q ss_pred cCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3014 295 KEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYID 374 (570)
Q Consensus 295 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 374 (570)
|+++.|++-|+.+++...-. +-.-++++.+.++.+++..|+++...++... +..+
T Consensus 158 gqyEaAvqkFqaAlqvsGyq---pllAYniALaHy~~~qyasALk~iSEIieRG----------------------~r~H 212 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQ---PLLAYNLALAHYSSRQYASALKHISEIIERG----------------------IRQH 212 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCC---chhHHHHHHHHHhhhhHHHHHHHHHHHHHhh----------------------hhcC
Confidence 99999999999999887776 6778889999999999999999888877622 2245
Q ss_pred hh-------------------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcC
Q psy3014 375 PV-------------------------KAEEAKERGNELFKNGKYADAVKEYTEAINRN--PDDPKYYSNRAACYTKLAA 427 (570)
Q Consensus 375 ~~-------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~ 427 (570)
|. -.+++...+-++++.|+++.|.+.+...--.. .-+|..+.+++..- ..++
T Consensus 213 PElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~ 291 (459)
T KOG4340|consen 213 PELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDAR 291 (459)
T ss_pred CccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCC
Confidence 54 23455566777888888888876554322111 12566777777543 3456
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHHhcCCHHHHHH
Q psy3014 428 FDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA-----EAVEGYRQCSIAVSSNPEEVRK 502 (570)
Q Consensus 428 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~~e~~~~ 502 (570)
+.....-+.=.+.++|--+..+.++-.+|.+..-|+-|-..+ .-+|+.. +..+.|-..+....-.+|...+
T Consensus 292 p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL----AEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~K 367 (459)
T KOG4340|consen 292 PTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL----AENAHLTYKFLTPYLYDLLDALITCQTAPEEAFK 367 (459)
T ss_pred ccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH----hhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHH
Confidence 777777777788888866777788888888887777776543 4455432 2334455555555556666655
Q ss_pred HH
Q psy3014 503 RA 504 (570)
Q Consensus 503 ~~ 504 (570)
++
T Consensus 368 KL 369 (459)
T KOG4340|consen 368 KL 369 (459)
T ss_pred HH
Confidence 54
No 131
>KOG4648|consensus
Probab=99.35 E-value=8.5e-13 Score=114.14 Aligned_cols=241 Identities=15% Similarity=0.118 Sum_probs=193.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYK 329 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 329 (570)
....|..|+++|.|++|+.||.+++..+|.|+..+.++|..|++.+++..|...++.++.++..+ ..+|.+.|.+-.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y---~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY---VKAYSRRMQARE 176 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH---HHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999888 999999999999
Q ss_pred HcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHH---------HHHHHHHHHHCCCHHHHHHH
Q psy3014 330 KMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEE---------AKERGNELFKNGKYADAVKE 400 (570)
Q Consensus 330 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~A~~~ 400 (570)
.+|+..+|.+.++.++.+.|...-+...-.--.....-+-+....|....+ ...-|..+...|.++.++.+
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~ 256 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVD 256 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeE
Confidence 999999999999999999887432222211111111111122222221111 22347777888899999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 401 YTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 401 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
+...+.....+.....+ +..+.+..+++.|+..+.+++..+|.........|..-.-.|...++...++.++.+.|.+.
T Consensus 257 ~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~ 335 (536)
T KOG4648|consen 257 VVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVE 335 (536)
T ss_pred eeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccc
Confidence 88877766665555555 77888899999999999999999998877777777777778899999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q psy3014 481 EAVEGYRQCSIAVS 494 (570)
Q Consensus 481 ~~~~~l~~~~~~~~ 494 (570)
.+...+.+.-..+-
T Consensus 336 ~~~~~~sr~~~~ii 349 (536)
T KOG4648|consen 336 TPKETETRKDTKIV 349 (536)
T ss_pred cchhhhhhhccccc
Confidence 99888877765553
No 132
>KOG4234|consensus
Probab=99.35 E-value=8.5e-12 Score=99.50 Aligned_cols=120 Identities=31% Similarity=0.527 Sum_probs=110.0
Q ss_pred hhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-----cchhhchhHHHhcccCHHHHHHHHhchhccCCCChh
Q psy3014 6 SLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN-----HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPK 80 (570)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 80 (570)
.....++.+...|+.+|..|+|++|..-|..||...|.. ...|.+.|.++++++.++.|+..+.++|+++|.+..
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k 169 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK 169 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH
Confidence 335678899999999999999999999999999999875 457889999999999999999999999999999999
Q ss_pred HHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 81 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
++.++|.+|.++.++++|+..|+++++.+|....+...++++-..
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~ 214 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPK 214 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHH
Confidence 999999999999999999999999999999999888877766443
No 133
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.34 E-value=9.6e-12 Score=98.09 Aligned_cols=108 Identities=20% Similarity=0.241 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchhhchhHHHhcccCHHHHHHHHhchhccCCCC---hhHHhH
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW---PKGYSR 84 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 84 (570)
++.++..|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 5788999999999999999999999999999886 4688999999999999999999999999998885 678999
Q ss_pred HHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHH
Q psy3014 85 KGSALSYLGRYKESISTYEEGLKLDPNNEQMKEA 118 (570)
Q Consensus 85 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 118 (570)
+|.++...|++++|+..++++++..|++..+...
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 9999999999999999999999999998776543
No 134
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.34 E-value=4.1e-11 Score=94.49 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC---HHHHHH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDD---PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF---LKGWIR 451 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 451 (570)
+.+++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|+++.|+..|++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578899999999999999999999999998876 5789999999999999999999999999998885 678999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy3014 452 KGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485 (570)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 485 (570)
+|.++..+|++++|..+++++++..|++..+...
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 9999999999999999999999999999876544
No 135
>PRK15331 chaperone protein SicA; Provisional
Probab=99.32 E-value=1.1e-10 Score=92.06 Aligned_cols=122 Identities=14% Similarity=0.077 Sum_probs=111.1
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
+.++.-+..+..|.-++..|++++|...|+-..-.+|.++..|..||.|+..+++|++|+..|..+..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 67778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
|.|+..+|+...|+.+|+.+++ .|.+..+...-...+..+..
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT 153 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999 68877776655555554443
No 136
>KOG0543|consensus
Probab=99.30 E-value=6.3e-11 Score=106.23 Aligned_cols=118 Identities=34% Similarity=0.506 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----C-----------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPD----D-----------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 443 (570)
......|..+++.|+|..|...|++++..-+. + ..++.+++.|+.++++|.+|+..++++|.++|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 34566799999999999999999999875321 1 23799999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCC
Q psy3014 444 KFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSN 496 (570)
Q Consensus 444 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 496 (570)
+|..++|+.|.++..+|+++.|+..|+++++++|+|..+...|..|..+....
T Consensus 289 ~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 289 NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888763
No 137
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.29 E-value=1.5e-11 Score=85.62 Aligned_cols=67 Identities=22% Similarity=0.408 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCC
Q psy3014 411 DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQ-QQSKAIDAYEKALELDA 477 (570)
Q Consensus 411 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p 477 (570)
++.+|..+|.++...|++++|+..|+++++++|+++.+++++|.++..+| ++++|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46677788888888888888888888888888888888888888888887 68888888888888777
No 138
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.1e-10 Score=99.44 Aligned_cols=124 Identities=18% Similarity=0.134 Sum_probs=110.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC---hHHHHHHHHHHHhcC
Q psy3014 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAA---FDLGLKDCETCLKLD 442 (570)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~ 442 (570)
.++..+..+|++++-|..+|.+|+.+|+++.|...|.+++++.|++++.+..+|.+++...+ ..++...+++++..+
T Consensus 144 ~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D 223 (287)
T COG4235 144 RLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD 223 (287)
T ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence 33444448999999999999999999999999999999999999999999999999887654 678999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy3014 443 PKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489 (570)
Q Consensus 443 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 489 (570)
|++..+.+.+|..++..|+|.+|...++..++..|.+..-...+...
T Consensus 224 ~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 224 PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999998876655444433
No 139
>KOG0543|consensus
Probab=99.28 E-value=3.7e-11 Score=107.70 Aligned_cols=118 Identities=25% Similarity=0.423 Sum_probs=108.0
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---------------cchhhchhHHHhcccCHHHHHHHHhchh
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN---------------HILFSNRSAAFAKEGNYEKALEDAEKTI 72 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al 72 (570)
-..+......|+.+++.|+|..|...|++++..-+.. ..++.+++.|+.++++|.+|+..+++++
T Consensus 205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3567788899999999999999999999998763311 4578999999999999999999999999
Q ss_pred ccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 73 SLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 73 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
..+|+|+.++++.|.++..+|+++.|+..|+++++++|+|..+...+..+...
T Consensus 285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888766
No 140
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.27 E-value=1.8e-10 Score=96.78 Aligned_cols=107 Identities=22% Similarity=0.272 Sum_probs=97.4
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD---PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 449 (570)
..+.....++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|++..++
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 345667789999999999999999999999999887653 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC--------------HHHHHHHHHHHHhhCCCc
Q psy3014 450 IRKGKILQGMQQ--------------QSKAIDAYEKALELDASN 479 (570)
Q Consensus 450 ~~l~~~~~~~g~--------------~~~A~~~~~~al~~~p~~ 479 (570)
..+|.++...|+ +.+|.+++++++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999888 678888999999999987
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.26 E-value=1e-09 Score=89.09 Aligned_cols=133 Identities=19% Similarity=0.205 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
.+...+.........++...+...++..+..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+......+.+
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 34444555555556888888888888888888887 456677888888888888888888888887776665667788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
.++.++...|++++|+..++... ..+..+.++..+|.++...|++++|+..|+
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~---------------------------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIP---------------------------DEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcc---------------------------CcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888888888886632 344556677778888888888888888888
Q ss_pred HHH
Q psy3014 403 EAI 405 (570)
Q Consensus 403 ~al 405 (570)
+++
T Consensus 143 ~Al 145 (145)
T PF09976_consen 143 KAL 145 (145)
T ss_pred HhC
Confidence 764
No 142
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.25 E-value=6.2e-12 Score=87.56 Aligned_cols=67 Identities=36% Similarity=0.545 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhccc-CHHHHHHHHhchhccCC
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEG-NYEKALEDAEKTISLKP 76 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 76 (570)
++..|..+|..++..|+|++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46677777777777777777777777777777777777777777777777 67777777777777776
No 143
>KOG2047|consensus
Probab=99.24 E-value=2.8e-07 Score=87.35 Aligned_cols=347 Identities=14% Similarity=0.114 Sum_probs=230.0
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-CCCC-----cchhhchhHHHhcccCHHHHHHHHhchhccCCC
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKL-DGTN-----HILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 77 (570)
+++.|.+++.|...... ..|+..+-+..|.+|++. +|.. ...|...|..|...|+.+.|...|+++++..-.
T Consensus 342 LRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 34555666666655443 366777777777777653 4542 345667777777777777777777777766432
Q ss_pred ----ChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCC
Q psy3014 78 ----WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDP 153 (570)
Q Consensus 78 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (570)
-..+|...|..-....+++.|++..+++... |.++..-.
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~------------------------------------ 462 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEY------------------------------------ 462 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhh------------------------------------
Confidence 2456777777777777777777777776654 33222000
Q ss_pred CCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 154 RTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPA 233 (570)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (570)
..+...
T Consensus 463 ----------------------------yd~~~p---------------------------------------------- 468 (835)
T KOG2047|consen 463 ----------------------------YDNSEP---------------------------------------------- 468 (835)
T ss_pred ----------------------------hcCCCc----------------------------------------------
Confidence 000000
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccc-
Q psy3014 234 EPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA- 312 (570)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~- 312 (570)
....--.....|...+......|-++.....|++.+.+.--.|....+.|..+....-+++|.+.|++.+.+.+
T Consensus 469 -----vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 469 -----VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred -----HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 00000134667778888888999999999999999999988999999999999999999999999999998864
Q ss_pred -ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhH-HHHHHHHHHHHH
Q psy3014 313 -DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKA-EEAKERGNELFK 390 (570)
Q Consensus 313 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 390 (570)
.-..+...|......-...-..+.|...|+++++..| |..+ ..+...+..-..
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp-------------------------p~~aKtiyLlYA~lEEe 598 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP-------------------------PEHAKTIYLLYAKLEEE 598 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-------------------------HHHHHHHHHHHHHHHHH
Confidence 3323344444444444445578889999999988443 2222 234455666667
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc----ChHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHhCCCHHH
Q psy3014 391 NGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA----AFDLGLKDCETCLKLDPKFL--KGWIRKGKILQGMQQQSK 464 (570)
Q Consensus 391 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~ 464 (570)
-|--..|+..|+++-...+... .+.+=.+|...- -...-...|++|++.-|+.. ..-...+..-.+.|..+.
T Consensus 599 ~GLar~amsiyerat~~v~~a~--~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidR 676 (835)
T KOG2047|consen 599 HGLARHAMSIYERATSAVKEAQ--RLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDR 676 (835)
T ss_pred hhHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHH
Confidence 7888889999998876543211 111222222110 12345677888888877643 334557888888999999
Q ss_pred HHHHHHHHHhhC-C-CcHHHHHHHHHHHHHhcC
Q psy3014 465 AIDAYEKALELD-A-SNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 465 A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~~~ 495 (570)
|...|.-+-++. | .+++.|........+.|+
T Consensus 677 ARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 677 ARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 999998888875 3 467888888888888888
No 144
>KOG4234|consensus
Probab=99.24 E-value=2.7e-10 Score=91.04 Aligned_cols=116 Identities=34% Similarity=0.606 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPDDP-----KYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKG 453 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 453 (570)
..+..-|.-++..|+|.+|..-|..|+.+.|..+ ..|.+.|.+..+++.++.|+..+.++++++|.+..++.+.|
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 3455568889999999999999999999999753 47889999999999999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 454 KILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
.+|.++..|++|++.|+++++.+|...++....+++--...
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999888777666544444
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.22 E-value=1.4e-11 Score=89.43 Aligned_cols=82 Identities=30% Similarity=0.490 Sum_probs=74.0
Q ss_pred HcCCHHHHHHHHHHHHccCCC--CcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHH
Q psy3014 23 QANNFIEAIEAYSEAIKLDGT--NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESIS 100 (570)
Q Consensus 23 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 100 (570)
.+|+|++|+..|++++..+|. +...++.+|.|+++.|++++|+..+++ ...+|.++..++.+|.++..+|++++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 466788899999999999999999999 88999999999999999999999999999
Q ss_pred HHHHh
Q psy3014 101 TYEEG 105 (570)
Q Consensus 101 ~~~~a 105 (570)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.22 E-value=2.1e-10 Score=86.69 Aligned_cols=99 Identities=36% Similarity=0.584 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q psy3014 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM 459 (570)
Q Consensus 380 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 459 (570)
+++.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q psy3014 460 QQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 460 g~~~~A~~~~~~al~~~p~ 478 (570)
|++++|..++.++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999998874
No 147
>KOG1941|consensus
Probab=99.22 E-value=3.2e-09 Score=93.13 Aligned_cols=316 Identities=16% Similarity=0.172 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchhhchhHHHhcccCHHHHHHHHhchhcc----CCC--ChhH
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKEGNYEKALEDAEKTISL----KPD--WPKG 81 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~ 81 (570)
+......|..++...++++|+..+.+.+..-.+. ...+-.+..+...+|.|++++..--..+.. +.. ..++
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788999999999999999999998765443 233445667888899999887765444332 222 2467
Q ss_pred HhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCC
Q psy3014 82 YSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD 161 (570)
Q Consensus 82 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (570)
+.++++.+...-++.+++.+-+..+.+....+.-
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~---------------------------------------------- 119 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQ---------------------------------------------- 119 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc----------------------------------------------
Confidence 8888999988888888888777666654322100
Q ss_pred hHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q psy3014 162 PSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLT 241 (570)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (570)
T Consensus 120 -------------------------------------------------------------------------------- 119 (518)
T KOG1941|consen 120 -------------------------------------------------------------------------------- 119 (518)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh-
Q psy3014 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD------ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF- 314 (570)
Q Consensus 242 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~- 314 (570)
.-......+|..+...+.++++++.|++|+...-++ ..+...+|.++-..+++++|.-+..++.++..+.
T Consensus 120 ---~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~ 196 (518)
T KOG1941|consen 120 ---LGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG 196 (518)
T ss_pred ---ccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC
Confidence 001223347888888999999999999999874332 3577899999999999999999999988654322
Q ss_pred ------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q psy3014 315 ------KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNEL 388 (570)
Q Consensus 315 ------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (570)
.....+++.++..+..+|..-+|.++.+++.+..-.. -..+........+|.+|
T Consensus 197 l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~--------------------Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 197 LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH--------------------GDRALQARCLLCFADIY 256 (518)
T ss_pred cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh--------------------CChHHHHHHHHHHHHHH
Confidence 2346778899999999999999999999987732100 02344567778899999
Q ss_pred HHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcChHH-----HHHHHHHHHhcCCC------CHHHHHH
Q psy3014 389 FKNGKYADAVKEYTEAINRNPD------DPKYYSNRAACYTKLAAFDL-----GLKDCETCLKLDPK------FLKGWIR 451 (570)
Q Consensus 389 ~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~-----A~~~~~~al~~~p~------~~~~~~~ 451 (570)
...|+.+.|..-|+.+...... ...++...|.++....-..+ |++.-++++++... -...+..
T Consensus 257 R~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcr 336 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCR 336 (518)
T ss_pred HhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999999865322 34566777777766555554 88888888876433 2456788
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 452 KGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
++.+|..+|.-++=...+.++-+.
T Consensus 337 la~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 337 LASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHhccchhHHHHHHHHHHHH
Confidence 999999998887777777765443
No 148
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.21 E-value=3.3e-09 Score=86.23 Aligned_cols=108 Identities=22% Similarity=0.254 Sum_probs=103.1
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
..+.+..+++.|..|-..|-+.-|.--|.+++.+.|+-+.++..+|.-+...|+++.|.+.|+..++++|.+.-++.++|
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg 140 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 140 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCcHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNNEQ 114 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (570)
..++--|++.-|.+.+.+-.+.+|+++-
T Consensus 141 i~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 141 IALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred eeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 9999999999999999999999999874
No 149
>PRK15331 chaperone protein SicA; Provisional
Probab=99.21 E-value=2.2e-10 Score=90.30 Aligned_cols=109 Identities=11% Similarity=-0.010 Sum_probs=101.5
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
....+..+..|..++.+|++++|...|+-....+|.++..+++||.|+..+++|++|+..|..+..++++++...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcHHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNEQMKE 117 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 117 (570)
|+..+|+...|+.+|+.++. .|.+.....
T Consensus 114 C~l~l~~~~~A~~~f~~a~~-~~~~~~l~~ 142 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE-RTEDESLRA 142 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh-CcchHHHHH
Confidence 99999999999999999998 466554433
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.20 E-value=8.9e-11 Score=88.78 Aligned_cols=99 Identities=42% Similarity=0.650 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhc
Q psy3014 13 LLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYL 92 (570)
Q Consensus 13 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 92 (570)
.++.+|..++..|++++|+..|+++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHhhccCCC
Q psy3014 93 GRYKESISTYEEGLKLDPN 111 (570)
Q Consensus 93 g~~~~A~~~~~~al~~~p~ 111 (570)
|++++|...+.++++.+|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988874
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.19 E-value=9.5e-10 Score=92.37 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 281 ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 281 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
..+++.+|.++...|++++|+.+|+++++..|+......++..+|.++...|++++|+..+.+++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555555544443322234555555555555555555555555555
No 152
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.19 E-value=1.3e-09 Score=91.35 Aligned_cols=105 Identities=19% Similarity=0.182 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 376 VKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD---PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
.....++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..+++++.++|.....+..+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 347788999999999999999999999999887663 45899999999999999999999999999999999999999
Q ss_pred HHHHH-------hCCCHH-------HHHHHHHHHHhhCCCcH
Q psy3014 453 GKILQ-------GMQQQS-------KAIDAYEKALELDASNA 480 (570)
Q Consensus 453 ~~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 480 (570)
|.++. .+|+++ +|+.+|++++..+|++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99988 777766 66777777888888655
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.18 E-value=1.1e-10 Score=79.96 Aligned_cols=64 Identities=31% Similarity=0.466 Sum_probs=49.8
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 417 NRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 417 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
.+|..+...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5677778888888888888888888888888888888888888888888888888888888764
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.18 E-value=6.7e-11 Score=85.77 Aligned_cols=81 Identities=28% Similarity=0.459 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q psy3014 391 NGKYADAVKEYTEAINRNPD--DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDA 468 (570)
Q Consensus 391 ~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (570)
+|+|+.|+..++++++..|. +...++.+|.|+++.|++++|+..+++ ...+|.+...++.+|.++.++|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999995 466788899999999999999999999 888888888999999999999999999999
Q ss_pred HHHH
Q psy3014 469 YEKA 472 (570)
Q Consensus 469 ~~~a 472 (570)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.18 E-value=3.2e-09 Score=96.81 Aligned_cols=221 Identities=21% Similarity=0.286 Sum_probs=157.0
Q ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc---c
Q psy3014 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDP--TD----ITFQNNIAAVYFERKEYDQCIEQYIQKIENR---A 312 (570)
Q Consensus 242 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---~ 312 (570)
....-++.+...|..|...|++++|..+|.++....- ++ ...+...+.++... ++++|+.++++++.+. .
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC
Confidence 3445678888899999999999999999999977532 11 34556666666555 9999999999998653 3
Q ss_pred ChhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC
Q psy3014 313 DFKLIAKALQRIGNCYKKM-EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKN 391 (570)
Q Consensus 313 ~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (570)
.....+.++..+|.+|... |++++|+.+|+++.......+ ..-.....+..+|.++...
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--------------------~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--------------------SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---------------------HHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--------------------ChhhHHHHHHHHHHHHHHh
Confidence 3345588999999999998 999999999999988432110 1112355677899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHh-
Q psy3014 392 GKYADAVKEYTEAINRNPDD-------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL-----KGWIRKGKILQG- 458 (570)
Q Consensus 392 ~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~- 458 (570)
|+|++|+..|+++....-++ ...++..+.|+...|++..|...+++....+|... .....+-.++..
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 99999999999998753221 23567788899999999999999999999988653 233344444433
Q ss_pred -CCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 459 -MQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 459 -~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
...+..|+..|.+.-.+||=...++
T Consensus 249 D~e~f~~av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp -CCCHHHHCHHHTTSS---HHHHHHH
T ss_pred CHHHHHHHHHHHcccCccHHHHHHHH
Confidence 4578888888888877776443333
No 156
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.6e-10 Score=98.81 Aligned_cols=119 Identities=21% Similarity=0.210 Sum_probs=108.2
Q ss_pred hhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhccc---CHHHHHHHHhchhccCCCCh
Q psy3014 3 NLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEG---NYEKALEDAEKTISLKPDWP 79 (570)
Q Consensus 3 ~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~ 79 (570)
.+...|.+++.|..+|.+|+..|+++.|...|.+++++.|+++..+..+|.++..+. ...++...+++++..+|+++
T Consensus 148 ~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~i 227 (287)
T COG4235 148 HLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANI 227 (287)
T ss_pred HHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccH
Confidence 467889999999999999999999999999999999999999999999999987653 46789999999999999999
Q ss_pred hHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q psy3014 80 KGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKD 121 (570)
Q Consensus 80 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 121 (570)
.+.+.+|..++..|+|.+|+..++..++..|.+......+-.
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 999999999999999999999999999999887655444333
No 157
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.16 E-value=6.2e-09 Score=84.65 Aligned_cols=199 Identities=12% Similarity=0.002 Sum_probs=148.9
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
+...+..++..|..|-..|-+.-|.-.|.+++.+.|+.+.++..+|..+...|+|+.|.+.|...++++|.+ ..+..
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y---~Ya~l 137 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHL 137 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc---hHHHh
Confidence 347789999999999999999999999999999999999999999999999999999999999999999999 88999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH--HHCCCHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNEL--FKNGKYADAVKE 400 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~ 400 (570)
+.|..+..-|++.-|...+.+-.+ .+|++|--- -++| ...-+..+|...
T Consensus 138 NRgi~~YY~gR~~LAq~d~~~fYQ--------------------------~D~~DPfR~---LWLYl~E~k~dP~~A~tn 188 (297)
T COG4785 138 NRGIALYYGGRYKLAQDDLLAFYQ--------------------------DDPNDPFRS---LWLYLNEQKLDPKQAKTN 188 (297)
T ss_pred ccceeeeecCchHhhHHHHHHHHh--------------------------cCCCChHHH---HHHHHHHhhCCHHHHHHH
Confidence 999999999999999999999888 555554211 1122 233456667665
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy3014 401 YTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF-------LKGWIRKGKILQGMQQQSKAIDAYEKAL 473 (570)
Q Consensus 401 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al 473 (570)
+.+-.+...+..+.|...+. .+|+..+ ...++++.....++ .++++.+|..+...|+.++|...|+-++
T Consensus 189 L~qR~~~~d~e~WG~~iV~~---yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 189 LKQRAEKSDKEQWGWNIVEF---YLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHhccHhhhhHHHHHH---HHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 54443333334444443332 2333221 12233333322222 4678889999999999999999999998
Q ss_pred hhCC
Q psy3014 474 ELDA 477 (570)
Q Consensus 474 ~~~p 477 (570)
..+-
T Consensus 265 annV 268 (297)
T COG4785 265 ANNV 268 (297)
T ss_pred HHhH
Confidence 7654
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.14 E-value=6.1e-11 Score=81.26 Aligned_cols=63 Identities=29% Similarity=0.402 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCC
Q psy3014 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW 78 (570)
Q Consensus 16 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (570)
.+|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555555555555555555555555555555555555555555555555555555555544
No 159
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.13 E-value=5.1e-09 Score=85.02 Aligned_cols=93 Identities=19% Similarity=0.199 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPDD---PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKI 455 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 455 (570)
.+.+.+|.+++..|++++|...|+.++...|+. +.+.+.+|.++...|++++|+..++. +.-.+-.+.++..+|.+
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi 127 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDI 127 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHH
Confidence 344444444444555555555555544443332 22444455555555555555555433 12222233344445555
Q ss_pred HHhCCCHHHHHHHHHHH
Q psy3014 456 LQGMQQQSKAIDAYEKA 472 (570)
Q Consensus 456 ~~~~g~~~~A~~~~~~a 472 (570)
+...|++++|+..|++|
T Consensus 128 ~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 128 YLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHCCCHHHHHHHHHHh
Confidence 55555555555555544
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.13 E-value=2.8e-09 Score=94.45 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC---CHHHH
Q psy3014 377 KAEEAKERGNEL-FKNGKYADAVKEYTEAINRNPDD---PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK---FLKGW 449 (570)
Q Consensus 377 ~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~ 449 (570)
....++..+..+ +..|+|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|++++...|+ .++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 346667777765 66899999999999999999987 579999999999999999999999999988877 57889
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 486 (570)
+.+|.++..+|++++|+..|+++++..|+...+....
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~ 257 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQ 257 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 9999999999999999999999999999988765443
No 161
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.13 E-value=6.4e-10 Score=98.44 Aligned_cols=110 Identities=14% Similarity=0.065 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHccCCCC---cchhhchhHHHhcccCHHHHHHHHhchhccCCC---ChhHH
Q psy3014 10 EVSLLKDKGNAA-LQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKEGNYEKALEDAEKTISLKPD---WPKGY 82 (570)
Q Consensus 10 ~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~ 82 (570)
+....+..|..+ +..|+|++|+..|+..+...|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 357788888887 66899999999999999999998 479999999999999999999999999988887 57899
Q ss_pred hHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHH
Q psy3014 83 SRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAI 119 (570)
Q Consensus 83 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 119 (570)
+.+|.++..+|++++|...|+++++..|+...+....
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~ 257 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQ 257 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 9999999999999999999999999999988765543
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.12 E-value=3.1e-09 Score=96.97 Aligned_cols=185 Identities=23% Similarity=0.247 Sum_probs=136.7
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc---cChhHHHHHHHHHHHHHHHcCCHHHH
Q psy3014 261 KNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR---ADFKLIAKALQRIGNCYKKMEDWKNA 337 (570)
Q Consensus 261 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A 337 (570)
.++++|...|++| |.+|...|++++|...|.++.... .+.......+...+.++... ++++|
T Consensus 29 ~~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~A 93 (282)
T PF14938_consen 29 PDYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEA 93 (282)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHH
T ss_pred CCHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHH
Confidence 3677777777765 677888999999999999987443 22233466777777777666 99999
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCC--CC---
Q psy3014 338 KVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKN-GKYADAVKEYTEAINRNP--DD--- 411 (570)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p--~~--- 411 (570)
+.+|++++... ...|++ ..-+..+..+|.+|... |++++|+++|++|++... +.
T Consensus 94 i~~~~~A~~~y------~~~G~~--------------~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~ 153 (282)
T PF14938_consen 94 IECYEKAIEIY------REAGRF--------------SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS 153 (282)
T ss_dssp HHHHHHHHHHH------HHCT-H--------------HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHH------HhcCcH--------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh
Confidence 99999998732 122211 22356778899999999 999999999999998732 12
Q ss_pred -HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 412 -PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF-------LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 412 -~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
...+..+|.++...|+|++|++.|+++....-++ ...++..+.|+...|++..|...+++....+|...
T Consensus 154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 3477889999999999999999999998754221 13456788899999999999999999999998643
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.11 E-value=5.2e-09 Score=102.34 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=41.7
Q ss_pred HhcCCCCHHHH--HHHHHHHHHhcC---HHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHc
Q psy3014 274 VEFDPTDITFQ--NNIAAVYFERKE---YDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKM 331 (570)
Q Consensus 274 l~~~p~~~~~~--~~la~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 331 (570)
....|.++.+| +..|.-+...++ ...|+.+|+++++.+|++ +.++..++.++...
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~---a~a~A~la~~~~~~ 389 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF---TYAQAEKALADIVR 389 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHH
Confidence 34567777766 556666665544 789999999999999999 88888888777543
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.11 E-value=3e-09 Score=89.07 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=76.8
Q ss_pred cCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHH
Q psy3014 261 KNFEEALAHYNKAVEFDPTD--ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAK 338 (570)
Q Consensus 261 ~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 338 (570)
..+..+...+...++..+.+ ...++.+|.++...|++++|+..|++++...|+....+.++.++|.++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 44566666665555555544 5666888888888888888888888888776664334567888888888888888888
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC
Q psy3014 339 VYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNG 392 (570)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (570)
..+++++. ..|.....+..+|.++...|
T Consensus 93 ~~~~~Al~--------------------------~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 93 EYYFQALE--------------------------RNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHH--------------------------hCcCcHHHHHHHHHHHHHhh
Confidence 88888887 66666677777777776333
No 165
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.11 E-value=5.2e-08 Score=82.80 Aligned_cols=188 Identities=19% Similarity=0.229 Sum_probs=147.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc---chhhchhHHHhcccCHHHHHHHHhchhccCCCCh---hHHh
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH---ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWP---KGYS 83 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 83 (570)
.+..|+..|...++.|+|++|++.|+.+....|.++ .+...++.++++.+++++|+..+++-+.+.|+++ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 578999999999999999999999999999988764 5688899999999999999999999999999865 4577
Q ss_pred HHHHHHhhc--------cCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCC
Q psy3014 84 RKGSALSYL--------GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRT 155 (570)
Q Consensus 84 ~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (570)
..|.++... .-..+|+..|+..+...|+..-+-.....+...
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~------------------------------ 162 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKL------------------------------ 162 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH------------------------------
Confidence 788887643 234578889999999999876543333222211
Q ss_pred CCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 156 KPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEP 235 (570)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (570)
T Consensus 163 -------------------------------------------------------------------------------- 162 (254)
T COG4105 163 -------------------------------------------------------------------------------- 162 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhccc
Q psy3014 236 EDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312 (570)
Q Consensus 236 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 312 (570)
....+.--..+|..|.+.|.+..|+.-++.+++..|+. .+++..+..+|..+|-.++|...-.-+-...|
T Consensus 163 -------~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 163 -------NDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred -------HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 00223334568999999999999999999999987765 46778888889999999998876655445555
Q ss_pred Ch
Q psy3014 313 DF 314 (570)
Q Consensus 313 ~~ 314 (570)
++
T Consensus 236 ~s 237 (254)
T COG4105 236 DS 237 (254)
T ss_pred CC
Confidence 55
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.09 E-value=6e-09 Score=101.91 Aligned_cols=137 Identities=17% Similarity=0.138 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC--
Q psy3014 318 AKALQRIGNCYKKMED---WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNG-- 392 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 392 (570)
+.-++..|..+...+. ...|+.+|+++++ .+|+.+.++-.++.++....
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--------------------------ldP~~a~a~A~la~~~~~~~~~ 392 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--------------------------SEPDFTYAQAEKALADIVRHSQ 392 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHHHhc
Confidence 3444555666655443 6677777777777 89999999888888775432
Q ss_pred ------CHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH
Q psy3014 393 ------KYADAVKEYTEAINR--NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK 464 (570)
Q Consensus 393 ------~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 464 (570)
+...+.....+++.. +|.++.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++
T Consensus 393 ~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~e 471 (517)
T PRK10153 393 QPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRL 471 (517)
T ss_pred CCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHH
Confidence 244566666666664 777889999999999999999999999999999999 47899999999999999999
Q ss_pred HHHHHHHHHhhCCCcHH
Q psy3014 465 AIDAYEKALELDASNAE 481 (570)
Q Consensus 465 A~~~~~~al~~~p~~~~ 481 (570)
|++.|++|+.++|.++.
T Consensus 472 A~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 472 AADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHhcCCCCch
Confidence 99999999999999885
No 167
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.09 E-value=1.4e-07 Score=80.31 Aligned_cols=188 Identities=18% Similarity=0.181 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
.+..++..|...++.|++++|+..|+.+....|.. ..+...++.++++.++++.|+...++.+.+.|.++....+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 47889999999999999999999999999998876 568899999999999999999999999999999999899999
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHhcccCCHH----HHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy3014 323 RIGNCYKKM--------EDWKNAKVYFEKSMSEHRTPE----IRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK 390 (570)
Q Consensus 323 ~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (570)
..|.++... .-...|+..|+..+...|+.. ....+..+..+ .+.--...|..|.+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~-------------LA~~Em~IaryY~k 179 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDA-------------LAGHEMAIARYYLK 179 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 999987653 224567788888888887743 22222221111 12223456778888
Q ss_pred CCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH
Q psy3014 391 NGKYADAVKEYTEAINRNPDD---PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL 446 (570)
Q Consensus 391 ~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 446 (570)
.|.+-.|+..++.+++..|+. .+++..+..+|..+|-.++|...-.-.-.-.|++.
T Consensus 180 r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 180 RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 888888888888888876654 45677777788888888877765544444445443
No 168
>KOG3081|consensus
Probab=99.08 E-value=1.9e-07 Score=78.88 Aligned_cols=163 Identities=14% Similarity=0.130 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCY 328 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 328 (570)
....-|.++...|++++|++..... .+.++...-..++.++.+.+-|.+.+++....+.+. ++..|+..+
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~-----tLtQLA~aw 179 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA-----TLTQLAQAW 179 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH-----HHHHHHHHH
Confidence 3444567777888888888777662 445666666677778888888888888877776554 333344433
Q ss_pred HH----cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 329 KK----MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 329 ~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
.. .++..+|.-+|+..-+ ..|..+.....++.+++.+|+|++|...++.+
T Consensus 180 v~la~ggek~qdAfyifeE~s~--------------------------k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 180 VKLATGGEKIQDAFYIFEELSE--------------------------KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred HHHhccchhhhhHHHHHHHHhc--------------------------ccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 32 2346666666666655 45556666777777777777777777777777
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcChHHHHH-HHHHHHhcCCCCHH
Q psy3014 405 INRNPDDPKYYSNRAACYTKLAAFDLGLK-DCETCLKLDPKFLK 447 (570)
Q Consensus 405 l~~~p~~~~~~~~la~~~~~~~~~~~A~~-~~~~al~~~p~~~~ 447 (570)
+..++++++++.++-.+-...|...++.. .+.+....+|+++.
T Consensus 234 L~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 234 LDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 77777777777777777777777655544 33444455666553
No 169
>PRK11906 transcriptional regulator; Provisional
Probab=99.06 E-value=2.1e-08 Score=92.72 Aligned_cols=171 Identities=13% Similarity=0.051 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHccC---HHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 249 KEKELGNEAYKKKN---FEEALAHYNKAV---EFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 249 ~~~~la~~~~~~~~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
.++..|...+..+. .+.|+.+|.+++ +++|....++..++.|++..--
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~-------------------------- 310 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL-------------------------- 310 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH--------------------------
Confidence 33555655544443 445666777777 6677777777777766653300
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
+|..- ......+|....+++++ .+|.++.++..+|.+....++++.|...|+
T Consensus 311 -~g~~~-~~~~~~~a~~~A~rAve--------------------------ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~ 362 (458)
T PRK11906 311 -HGKSE-LELAAQKALELLDYVSD--------------------------ITTVDGKILAIMGLITGLSGQAKVSHILFE 362 (458)
T ss_pred -hcCCC-chHHHHHHHHHHHHHHh--------------------------cCCCCHHHHHHHHHHHHhhcchhhHHHHHH
Confidence 00000 11223445555555555 566666666666666666666666666666
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHH
Q psy3014 403 EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKI-LQGMQQQSKAIDAYEKAL 473 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al 473 (570)
+++.++|+.+.+|+..|.+....|+.++|++.++++++++|....+-...-.+ .+-....++|+..|-+--
T Consensus 363 rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 363 QAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred HHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhcc
Confidence 66666666666666666666666666666666666666666554443332233 233344556666555443
No 170
>PRK11906 transcriptional regulator; Provisional
Probab=99.06 E-value=2.8e-08 Score=91.95 Aligned_cols=162 Identities=9% Similarity=-0.026 Sum_probs=129.8
Q ss_pred HhcCCCCH---HHH----HHHHHHHHHhc---CHHHHHHHHHHHh---hcccChhHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy3014 274 VEFDPTDI---TFQ----NNIAAVYFERK---EYDQCIEQYIQKI---ENRADFKLIAKALQRIGNCYKKMEDWKNAKVY 340 (570)
Q Consensus 274 l~~~p~~~---~~~----~~la~~~~~~~---~~~~A~~~~~~~l---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 340 (570)
....|.+. .+| +..|...+..+ ..+.|..+|.+++ .++|++ +.++..++.++...
T Consensus 241 ~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~---a~a~~~lA~~h~~~--------- 308 (458)
T PRK11906 241 VRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLK---TECYCLLAECHMSL--------- 308 (458)
T ss_pred hcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCccc---HHHHHHHHHHHHHH---------
Confidence 44445555 444 66666665554 3567899999999 889998 99999999887642
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 341 FEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAA 420 (570)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 420 (570)
+. +|..- ...+..+|....+++++++|.++.++..+|.
T Consensus 309 ---~~--------------------------------------~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~ 346 (458)
T PRK11906 309 ---AL--------------------------------------HGKSE-LELAAQKALELLDYVSDITTVDGKILAIMGL 346 (458)
T ss_pred ---HH--------------------------------------hcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 00 01111 1234568899999999999999999999999
Q ss_pred HHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy3014 421 CYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489 (570)
Q Consensus 421 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 489 (570)
+....++++.|...|++|+.++|+.+.+|+..|.+....|+.++|.+.++++++++|....+-..--++
T Consensus 347 ~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~ 415 (458)
T PRK11906 347 ITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECV 415 (458)
T ss_pred HHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876665443333
No 171
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.04 E-value=2.1e-07 Score=84.51 Aligned_cols=203 Identities=27% Similarity=0.318 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVE--FDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
.......+..+...+.+..+...+...+. ..+.....+...+..+...+++..++..+..++...+.. .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 135 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP---DLAEALL 135 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc---chHHHHH
Confidence 56677788888888889999988888887 677888888888888888888999999999888877665 3444444
Q ss_pred HH-HHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCCh---hhHHHHHHHHHHHHHCCCHHHHHHH
Q psy3014 325 GN-CYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDP---VKAEEAKERGNELFKNGKYADAVKE 400 (570)
Q Consensus 325 ~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~ 400 (570)
+. ++...|+++.|...+.+++. ..| .........+..+...++++.|+..
T Consensus 136 ~~~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 136 ALGALYELGDYEEALELYEKALE--------------------------LDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--------------------------cCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 55 78888888888888888866 333 3455556666667888899999999
Q ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 401 YTEAINRNPD-DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 401 ~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
+.+++...+. ....+..++.++...++++.|+..+..++...|.....+..++..+...|.++++...+.+++...|.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999888 68889999999999999999999999999998887777778888888777899999999999999887
No 172
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.04 E-value=9.8e-07 Score=79.98 Aligned_cols=169 Identities=27% Similarity=0.413 Sum_probs=111.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAA-VYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCY 328 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 328 (570)
+...|......+++..++..+..++...+.+.......+. ++...|+++.|...+.+++...|............+..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALL 177 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHH
Confidence 3344555555555666666666666665555444444444 666777777777777776664442001144555555556
Q ss_pred HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV-KAEEAKERGNELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 407 (570)
...++++.++..+.+++. ..+. ....+..++..+...+++..|+..+..++..
T Consensus 178 ~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 178 EALGRYEEALELLEKALK--------------------------LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred HHhcCHHHHHHHHHHHHh--------------------------hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 667777777777777776 4555 4666777777777777778888888888777
Q ss_pred CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC
Q psy3014 408 NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444 (570)
Q Consensus 408 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 444 (570)
.|.....+..++..+...+.++.+...+.+++...|.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 232 DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7776666777777777666688888888888877776
No 173
>KOG3081|consensus
Probab=99.01 E-value=8.2e-07 Score=75.19 Aligned_cols=168 Identities=14% Similarity=0.121 Sum_probs=122.3
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHH
Q psy3014 280 DITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISE 359 (570)
Q Consensus 280 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 359 (570)
+...+..-|.++...|++++|.+....... .++...-..++.++.+.+-|...+++..+
T Consensus 107 n~i~~l~aa~i~~~~~~~deAl~~~~~~~~--------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~------------- 165 (299)
T KOG3081|consen 107 NLIDLLLAAIIYMHDGDFDEALKALHLGEN--------LEAAALNVQILLKMHRFDLAEKELKKMQQ------------- 165 (299)
T ss_pred hHHHHHHhhHHhhcCCChHHHHHHHhccch--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------
Confidence 334555667778888999999888776322 44555556677788888888888888876
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHH----HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHH
Q psy3014 360 MEKKIKEEEKKAYIDPVKAEEAKERGNELF----KNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDC 435 (570)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 435 (570)
.+.+ .++..++..+. ..+++.+|.-+|++.-+..|..+......+.|+..+|+|++|...+
T Consensus 166 -------------ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 166 -------------IDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred -------------cchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 3322 23333444433 2346888888888888878888888889999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHH-HHHHHHhhCCCcHHHH
Q psy3014 436 ETCLKLDPKFLKGWIRKGKILQGMQQQSKAID-AYEKALELDASNAEAV 483 (570)
Q Consensus 436 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~ 483 (570)
+.++..+++++..+.++-.+-...|...++.+ ...+....+|+++-+.
T Consensus 231 ~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 231 EEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 99999999999999888888888887766654 4445555667765543
No 174
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.01 E-value=1e-06 Score=78.70 Aligned_cols=272 Identities=13% Similarity=0.051 Sum_probs=182.3
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN-HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
+.+-+....++..+-.|+|+.|.+-|+..+. +|.- ...+..|-..-.+.|..+.|..+.+.+-...|.-++++...-.
T Consensus 118 qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe 196 (531)
T COG3898 118 QEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE 196 (531)
T ss_pred chHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 4455666777777778888888888877664 3331 1112222222345778888888888888888887777777777
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcH-HHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNE-QMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ 166 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (570)
.....|+|+.|++..+......--.. .+....
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~r----------------------------------------------- 229 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSR----------------------------------------------- 229 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHH-----------------------------------------------
Confidence 77778888888877765443211000 011111
Q ss_pred HHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHH
Q psy3014 167 MIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRS 246 (570)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (570)
T Consensus 230 -------------------------------------------------------------------------------- 229 (531)
T COG3898 230 -------------------------------------------------------------------------------- 229 (531)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGN 326 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (570)
+..+...+... -..+...|...-.+++++.|+-..+-..-+..+++.|+..++-.+++.+.+..|.. . ++.
T Consensus 230 AvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP----~----ia~ 300 (531)
T COG3898 230 AVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP----D----IAL 300 (531)
T ss_pred HHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh----H----HHH
Confidence 11111111111 23457788899999999999999888899999999999999999999999988874 2 334
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q psy3014 327 CYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAIN 406 (570)
Q Consensus 327 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 406 (570)
.|....--+.++.-++++-.+ ..+.|++.+.....+...+..|++..|..--+.+..
T Consensus 301 lY~~ar~gdta~dRlkRa~~L-----------------------~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 301 LYVRARSGDTALDRLKRAKKL-----------------------ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred HHHHhcCCCcHHHHHHHHHHH-----------------------HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 444443334444445444331 117788888888888888888999888888888888
Q ss_pred cCCCCHHHHHHHHHHHHHh-cChHHHHHHHHHHHhc
Q psy3014 407 RNPDDPKYYSNRAACYTKL-AAFDLGLKDCETCLKL 441 (570)
Q Consensus 407 ~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~ 441 (570)
..|. ..++..++.+-... |+-.++..++-+++..
T Consensus 358 ~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 358 EAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 8875 34566677776554 8888888888888864
No 175
>KOG1070|consensus
Probab=99.00 E-value=3.6e-07 Score=94.07 Aligned_cols=162 Identities=12% Similarity=0.115 Sum_probs=117.4
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHH
Q psy3014 260 KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKV 339 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 339 (570)
-|.-+...+.|++|.+.. +...++..|..+|...+++++|.++++..++..... ..+|...|..+++.++-+.|..
T Consensus 1510 yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~---~~vW~~y~~fLl~~ne~~aa~~ 1585 (1710)
T KOG1070|consen 1510 YGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT---RKVWIMYADFLLRQNEAEAARE 1585 (1710)
T ss_pred hCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch---hhHHHHHHHHHhcccHHHHHHH
Confidence 355566667777776654 335677777778888888888888888888776655 7778888888888888788888
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy3014 340 YFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV--KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSN 417 (570)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 417 (570)
.+.+|+. .-|. ..+.....+++-++.|+.+.+...|+..+..+|...+.|.-
T Consensus 1586 lL~rAL~--------------------------~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~V 1639 (1710)
T KOG1070|consen 1586 LLKRALK--------------------------SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSV 1639 (1710)
T ss_pred HHHHHHh--------------------------hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHH
Confidence 8888877 3343 55666667777788888888888888888888888888887
Q ss_pred HHHHHHHhcChHHHHHHHHHHHhcC--CCCHHHHHH
Q psy3014 418 RAACYTKLAAFDLGLKDCETCLKLD--PKFLKGWIR 451 (570)
Q Consensus 418 la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~ 451 (570)
+...-.+.|+.+.+...|++++.+. |.....++.
T Consensus 1640 Yid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1640 YIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 7777777888888888888877653 333333433
No 176
>KOG2053|consensus
Probab=99.00 E-value=4.6e-05 Score=75.79 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=92.3
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHH
Q psy3014 21 ALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESIS 100 (570)
Q Consensus 21 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 100 (570)
....+++.+|+....+.++..|+...+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..+|++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 35678999999999999999999999999999999999999999988888878888888889999999999999999999
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 101 TYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 101 ~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
+|++++..+|+ .+....+-..+..
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR 122 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVR 122 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHH
Confidence 99999999999 6655555554444
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.99 E-value=8.6e-10 Score=76.44 Aligned_cols=66 Identities=24% Similarity=0.299 Sum_probs=45.5
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 22 LQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 22 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
+..|+|++|+..|++++..+|++..+++.+|.||+..|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456777777777777777777777777777777777777777777777777777776666655554
No 178
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.98 E-value=6.8e-09 Score=95.82 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=81.3
Q ss_pred cCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 407 RNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKG---WIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 407 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
.+|+++..++++|.+|...|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++|+++.+.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~----- 144 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL----- 144 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch-----
Confidence 467888999999999999999999999999999999998854 999999999999999999999999987321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHcCCchHHHhhcCHHHHHHHHHhhc
Q psy3014 484 EGYRQCSIAVSSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQN 528 (570)
Q Consensus 484 ~~l~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 528 (570)
.+..+..||++..+..++.+..+++....
T Consensus 145 ----------------~f~~i~~DpdL~plR~~pef~eLlee~rk 173 (453)
T PLN03098 145 ----------------KFSTILNDPDLAPFRASPEFKELQEEARK 173 (453)
T ss_pred ----------------hHHHHHhCcchhhhcccHHHHHHHHHHHH
Confidence 11234457777777777777777665543
No 179
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.97 E-value=7.5e-09 Score=79.92 Aligned_cols=109 Identities=22% Similarity=0.291 Sum_probs=98.0
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchhhchhHHHhcccCHHHHHHHHhchhccCCCCh---hHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWP---KGY 82 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 82 (570)
..+..++..|...+..|+|++|++.|+.+....|-. ..+.+.+|.+|+..|++++|+..+++-++++|+++ .++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 357889999999999999999999999999988875 56788999999999999999999999999999875 578
Q ss_pred hHHHHHHhhccC---------------HHHHHHHHHHhhccCCCcHHHHH
Q psy3014 83 SRKGSALSYLGR---------------YKESISTYEEGLKLDPNNEQMKE 117 (570)
Q Consensus 83 ~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~~ 117 (570)
+..|.+++.+.. ..+|...|+++++..|++..+-.
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999877 88999999999999999876543
No 180
>KOG1941|consensus
Probab=98.96 E-value=1.2e-07 Score=83.42 Aligned_cols=237 Identities=12% Similarity=0.115 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh---hHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD-----ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF---KLI 317 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~ 317 (570)
.-+++.+++..+.+..++.+++.+-+..+.+.... ..+...+|..+..++.++++++.|+.+++...+. ...
T Consensus 82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 45667788888888889999999988888764333 3577789999999999999999999999764322 122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
..++..+|..+....++++|.-+..++..+...-.+- ++ .......+++.++..+..+|+...|
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~----d~------------~~kyr~~~lyhmaValR~~G~LgdA 225 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK----DW------------SLKYRAMSLYHMAVALRLLGRLGDA 225 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC----ch------------hHHHHHHHHHHHHHHHHHhcccccH
Confidence 5678899999999999999999999988743221000 00 0112345677889999999999999
Q ss_pred HHHHHHHHhcC------CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCCHHH-
Q psy3014 398 VKEYTEAINRN------PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK------FLKGWIRKGKILQGMQQQSK- 464 (570)
Q Consensus 398 ~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~- 464 (570)
.++.+++.++. +-.......+|.+|...|+.+.|..-|+.+...... ...++...+.++....-..+
T Consensus 226 ~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~ 305 (518)
T KOG1941|consen 226 MECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKI 305 (518)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999998762 224557788999999999999999999999875322 24455666666655443333
Q ss_pred ----HHHHHHHHHhhCCC------cHHHHHHHHHHHHHhcCCHH
Q psy3014 465 ----AIDAYEKALELDAS------NAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 465 ----A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~e 498 (570)
|++.-++++++... -...+..++.+|...|..++
T Consensus 306 ~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~ 349 (518)
T KOG1941|consen 306 CNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDE 349 (518)
T ss_pred cccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhH
Confidence 88888888877532 12455678888888876544
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.96 E-value=2.5e-08 Score=76.12 Aligned_cols=63 Identities=11% Similarity=0.126 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 284 QNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 284 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
++.+|.++-..|+.++|+..|++++....+......++..+|..+...|++++|+..+++.+.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444444444443333333334444444444444444444444444444
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.95 E-value=3.2e-09 Score=73.56 Aligned_cols=66 Identities=20% Similarity=0.180 Sum_probs=47.0
Q ss_pred HHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy3014 423 TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQ 488 (570)
Q Consensus 423 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 488 (570)
...|++++|+..|++++..+|++..+++.+|.++.+.|++++|...+++++..+|+++.++..+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456777777777777777777777777777777777777777777777777777777666665554
No 183
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.94 E-value=1.4e-08 Score=87.09 Aligned_cols=111 Identities=20% Similarity=0.233 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchhhchhHHHhcccCHHHHHHHHhchhccCCCC---hhHHhH
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW---PKGYSR 84 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 84 (570)
+..+|..|..++..|+|..|...|..-++..|++ +.+++.||.+++.+|++++|...|..+++..|++ +++++.
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3458999999999999999999999999999986 6889999999999999999999999999988775 578999
Q ss_pred HHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q psy3014 85 KGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKD 121 (570)
Q Consensus 85 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 121 (570)
+|.+...+|+.++|...|+++++..|+...+...-..
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~ 257 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA 257 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 9999999999999999999999999999887655443
No 184
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.93 E-value=6.4e-09 Score=73.23 Aligned_cols=69 Identities=23% Similarity=0.394 Sum_probs=50.0
Q ss_pred HHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy3014 419 AACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYR 487 (570)
Q Consensus 419 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 487 (570)
..+|...+++++|++.+++++.++|+++..+..+|.++..+|++.+|+..|+++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456677777777777777777777777777777777777777777777777777777777766655443
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.93 E-value=8.8e-08 Score=73.11 Aligned_cols=99 Identities=16% Similarity=0.105 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
.+++.+|.++-..|+.++|+.+|++++...+.. ..++..+|.++..+|++++|+..+++.+...|++.....+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 468899999999999999999999999976554 56889999999999999999999999999989844447788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHhc
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988775
No 186
>KOG2471|consensus
Probab=98.93 E-value=1e-06 Score=80.90 Aligned_cols=163 Identities=17% Similarity=0.062 Sum_probs=120.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhch-hccCC------CC--hhHHhHH
Q psy3014 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKT-ISLKP------DW--PKGYSRK 85 (570)
Q Consensus 15 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p------~~--~~~~~~l 85 (570)
......++...+...+..-.+.+.....+++.+.+..+..++..|++.+|.+.+... +...| .. .-.|.++
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl 289 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL 289 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc
Confidence 334445566777777888888888777888999999999999999999999988653 22233 22 2357889
Q ss_pred HHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHH
Q psy3014 86 GSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYV 165 (570)
Q Consensus 86 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (570)
|-+++.+|.|.-+..+|.++++ |......-+ +.. ..++
T Consensus 290 GcIh~~~~~y~~~~~~F~kAL~----N~c~qL~~g--~~~-----------~~~~------------------------- 327 (696)
T KOG2471|consen 290 GCIHYQLGCYQASSVLFLKALR----NSCSQLRNG--LKP-----------AKTF------------------------- 327 (696)
T ss_pred ceEeeehhhHHHHHHHHHHHHH----HHHHHHhcc--CCC-----------Ccce-------------------------
Confidence 9999999999999999999997 111110000 000 0000
Q ss_pred HHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHH
Q psy3014 166 QMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQR 245 (570)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (570)
......
T Consensus 328 --------------------------------------------------------------------------tls~nk 333 (696)
T KOG2471|consen 328 --------------------------------------------------------------------------TLSQNK 333 (696)
T ss_pred --------------------------------------------------------------------------ehhccc
Confidence 000013
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE 293 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 293 (570)
.-++.++.|..+...|++-.|.++|.+++...-.+|..|..+|.|.+.
T Consensus 334 s~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 334 SMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred chhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 457789999999999999999999999999999999999999999874
No 187
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.90 E-value=5.9e-08 Score=90.57 Aligned_cols=131 Identities=16% Similarity=0.212 Sum_probs=111.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Q psy3014 324 IGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTE 403 (570)
Q Consensus 324 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 403 (570)
+-.++...++++.|+..+++..+ .+|+ +...++.++...++..+|+..+.+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~--------------------------~~pe---v~~~LA~v~l~~~~E~~AI~ll~~ 225 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRE--------------------------RDPE---VAVLLARVYLLMNEEVEAIRLLNE 225 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHh--------------------------cCCc---HHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34455566788888888888877 5554 566789999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 404 AINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 404 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
++...|.+...+...|..+...++++.|+...++++...|++...|+.|+.+|..+|++++|+..++.+=-..+.+....
T Consensus 226 aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~~ 305 (395)
T PF09295_consen 226 ALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYKL 305 (395)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999988775544433443343
No 188
>KOG1070|consensus
Probab=98.89 E-value=2.1e-07 Score=95.73 Aligned_cols=211 Identities=13% Similarity=0.019 Sum_probs=122.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-ccCh-hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3014 266 ALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN-RADF-KLIAKALQRIGNCYKKMEDWKNAKVYFEK 343 (570)
Q Consensus 266 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 343 (570)
..+-|++.+..+|+..-.|..+-..+...++.++|.+..++++.. ++.. .....+|..+-.....-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 344555555556666555655555555566666666666665532 2211 11122333333333333444444555555
Q ss_pred HhcccCC-------HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHH
Q psy3014 344 SMSEHRT-------PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD--DPKY 414 (570)
Q Consensus 344 ~~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~ 414 (570)
|.+.... ..++.....+++|.+.++..++...+....|..+|..++++++-+.|...+.+|++.-|. +...
T Consensus 1523 Acqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1523 ACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred HHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 5543322 112222223333333333333344456667777777777777777777777777777776 5666
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 415 YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 415 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
....|.+-++.|+.+.+...|+-.+..+|...+.|.-+...-.+.|+.+.+...|++++.+.
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 66777777777777777777777777777777777777777777777777777777777654
No 189
>KOG3617|consensus
Probab=98.89 E-value=2.1e-06 Score=83.91 Aligned_cols=207 Identities=13% Similarity=0.079 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGN 326 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (570)
...|.--|..+...|+.+.|+.+|..| .-|+.+..+..-+|+.++|..+-++. .+ ..+.+.+|.
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A--------~D~fs~VrI~C~qGk~~kAa~iA~es-----gd---~AAcYhlaR 975 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSA--------KDYFSMVRIKCIQGKTDKAARIAEES-----GD---KAACYHLAR 975 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHh--------hhhhhheeeEeeccCchHHHHHHHhc-----cc---HHHHHHHHH
Confidence 345555688888899999999999986 44677778888899999998766543 33 678889999
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhh----HHHH-------HHHHHHHHHCCCHH
Q psy3014 327 CYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVK----AEEA-------KERGNELFKNGKYA 395 (570)
Q Consensus 327 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~~~ 395 (570)
.|...|+..+|+.+|.++-.....-.+...- .+++ ....-++...|.+ +..+ ..-..+|.+.|.+.
T Consensus 976 ~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~d--~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~ 1052 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMKD--RLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIG 1052 (1416)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHH--HHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchH
Confidence 9999999999999998875522110000000 0000 0000011111111 0000 11123445556666
Q ss_pred HHHHHHHH-----HH-----hcCC-CCHHHHHHHHHHHHHhcChHHHHHHHHH------HHhcC----------------
Q psy3014 396 DAVKEYTE-----AI-----NRNP-DDPKYYSNRAACYTKLAAFDLGLKDCET------CLKLD---------------- 442 (570)
Q Consensus 396 ~A~~~~~~-----al-----~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~------al~~~---------------- 442 (570)
+|++..=+ ++ .++| .+|..+..-+..+....+|++|+..+-. |+.+.
T Consensus 1053 kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mT 1132 (1416)
T KOG3617|consen 1053 KALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMT 1132 (1416)
T ss_pred HHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcC
Confidence 65543211 11 2344 3677888888888888899998876543 44331
Q ss_pred CC---------CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy3014 443 PK---------FLKGWIRKGKILQGMQQQSKAIDAYEKA 472 (570)
Q Consensus 443 p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~a 472 (570)
|. ....+..+|.++.++|.|..|-+-|.+|
T Consensus 1133 p~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1133 PTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred cCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 11 1356778999999999999999888776
No 190
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.87 E-value=6.5e-08 Score=83.14 Aligned_cols=97 Identities=10% Similarity=0.195 Sum_probs=62.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGN 326 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (570)
.++.|.-++..|+|..|...|..-++..|++ +.+++.||.+++.+|+|++|...|..+.+..|+++..+++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6666666666666666666666666666654 4566666666666666666666666666666666555666666666
Q ss_pred HHHHcCCHHHHHHHHHHHhc
Q psy3014 327 CYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 327 ~~~~~~~~~~A~~~~~~~~~ 346 (570)
+...+|+.++|...|+++++
T Consensus 224 ~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 66666666666666666666
No 191
>KOG2471|consensus
Probab=98.86 E-value=8.6e-07 Score=81.40 Aligned_cols=117 Identities=14% Similarity=0.053 Sum_probs=98.6
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHH-HccCCC--------CcchhhchhHHHhcccCHHHHHHHHhchhc-c----
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEA-IKLDGT--------NHILFSNRSAAFAKEGNYEKALEDAEKTIS-L---- 74 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~---- 74 (570)
..+.+++.++..++..|+|.+|.+.+... +...|. .-..|.++|.+++++|.|.-+..+|.+|+. .
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999988654 222332 235678999999999999999999999995 1
Q ss_pred ----CC---------CChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 75 ----KP---------DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 75 ----~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
.| ...+..++.|..|...|++-.|.++|.++......++..|..++.+...
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 12 2456889999999999999999999999999999999999999988765
No 192
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.85 E-value=9.3e-08 Score=89.30 Aligned_cols=122 Identities=19% Similarity=0.291 Sum_probs=102.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Q psy3014 286 NIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365 (570)
Q Consensus 286 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 365 (570)
.+-.++...++++.|+..+++..+.+|+. ...++.++...++..+|+..+.+++.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev------~~~LA~v~l~~~~E~~AI~ll~~aL~------------------- 228 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEV------AVLLARVYLLMNEEVEAIRLLNEALK------------------- 228 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcH------HHHHHHHHHhcCcHHHHHHHHHHHHH-------------------
Confidence 34445566788999999999988877653 44578888888888899999988887
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q psy3014 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCL 439 (570)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 439 (570)
..|.+...+...+..+...++++.|+.+.++++...|++...|+.||.+|...|+++.|+..++.+-
T Consensus 229 -------~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 229 -------ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred -------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7888888888899999999999999999999999999999999999999999999999998777543
No 193
>KOG4642|consensus
Probab=98.85 E-value=4.5e-09 Score=86.81 Aligned_cols=102 Identities=25% Similarity=0.373 Sum_probs=97.7
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
++..++.+...|+.++....|+.|+..|.++|.++|..+..+.+.+.|+++.++++.+...+.+++++.|+.+.+++.+|
T Consensus 6 ~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg 85 (284)
T KOG4642|consen 6 MSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLG 85 (284)
T ss_pred cchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHhhcc
Q psy3014 87 SALSYLGRYKESISTYEEGLKL 108 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (570)
.+......+++|+..++++..+
T Consensus 86 ~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999665
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.83 E-value=2.5e-08 Score=70.17 Aligned_cols=70 Identities=24% Similarity=0.467 Sum_probs=64.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 385 GNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGK 454 (570)
Q Consensus 385 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 454 (570)
..++...+++++|+.++++++..+|+++..+..+|.++..+|++.+|+..++++++..|+++.+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999999999887765543
No 195
>KOG3617|consensus
Probab=98.80 E-value=1.1e-05 Score=78.98 Aligned_cols=288 Identities=19% Similarity=0.198 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGN 326 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (570)
-..|++.+..+...++.+.|+++|+++-. +. -.+...+.++..+++.|-+- ..+ ...|..-|.
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~-----ha-----fev~rmL~e~p~~~e~Yv~~---~~d----~~L~~WWgq 920 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGV-----HA-----FEVFRMLKEYPKQIEQYVRR---KRD----ESLYSWWGQ 920 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCC-----hH-----HHHHHHHHhChHHHHHHHHh---ccc----hHHHHHHHH
Confidence 34677888888889999999999998521 11 01222233444444444221 111 345555666
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q psy3014 327 CYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAIN 406 (570)
Q Consensus 327 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 406 (570)
.....|+.+.|+.+|..+-.-..-..+.-.+|+.++|-...+ ...+-.+.+.+|..|...|++.+|+..|.+|-.
T Consensus 921 YlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~-----esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 921 YLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAE-----ESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHH-----hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 667777777777777776654433333333344444433322 234556778899999999999999998887642
Q ss_pred ------cCCCC--HH------------HHHHHHHHHHHhc-ChHHHHHHHHHH------H-----------------hcC
Q psy3014 407 ------RNPDD--PK------------YYSNRAACYTKLA-AFDLGLKDCETC------L-----------------KLD 442 (570)
Q Consensus 407 ------~~p~~--~~------------~~~~la~~~~~~~-~~~~A~~~~~~a------l-----------------~~~ 442 (570)
+...+ .+ -....|..|...| +...|+..|.+| + .++
T Consensus 996 fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd 1075 (1416)
T KOG3617|consen 996 FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLD 1075 (1416)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcC
Confidence 21111 01 1112233333443 444444444332 1 123
Q ss_pred C-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHHHHHHHcCCchHHHhhcCHHHHH
Q psy3014 443 P-KFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEEVRKRAMGDPEVQQILRDPAMRL 521 (570)
Q Consensus 443 p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~ 521 (570)
| .++..+...+..+....+|++|...+-.+-+.. ..|..|..+-=...|+..+... |.-...+....-..
T Consensus 1076 ~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~-------~AlqlC~~~nv~vtee~aE~mT--p~Kd~~~~e~~R~~ 1146 (1416)
T KOG3617|consen 1076 AGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFS-------GALQLCKNRNVRVTEEFAELMT--PTKDDMPNEQERKQ 1146 (1416)
T ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHhcCCCchhHHHHHhcC--cCcCCCccHHHHHH
Confidence 4 367777888888899999999988766554332 1222222222122232222221 11111222222222
Q ss_pred HHHHh-------hcCHHHHHHhhcCHHHHHHHHHHHhcCchhhhHHhhhhh
Q psy3014 522 ILEQM-------QNDPRALSDHLKNPEIASKIQKLVNSGLIVLAFIFLSIS 565 (570)
Q Consensus 522 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (570)
+++++ -.+-.+...+-+-+.-...+..++.+|......+|.++|
T Consensus 1147 vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~s 1197 (1416)
T KOG3617|consen 1147 VLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTS 1197 (1416)
T ss_pred HHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeecc
Confidence 22222 223444455656666677888889999888877777765
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.79 E-value=2e-06 Score=68.55 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHH
Q psy3014 319 KALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAV 398 (570)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 398 (570)
.-.+.+|......|++.+|...|++++.- ....++..+..+++..+..+++..|.
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG-------------------------~fA~d~a~lLglA~Aqfa~~~~A~a~ 144 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSG-------------------------IFAHDAAMLLGLAQAQFAIQEFAAAQ 144 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhcc-------------------------ccCCCHHHHHHHHHHHHhhccHHHHH
Confidence 34455555555555555555555555542 33344455555555555555555555
Q ss_pred HHHHHHHhcCCC--CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q psy3014 399 KEYTEAINRNPD--DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDA 468 (570)
Q Consensus 399 ~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (570)
..+++..+.+|. .|+....+|..+...|++..|...|+.++...|. +.+....+..+.++|+..+|..-
T Consensus 145 ~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 145 QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHH
Confidence 555555555543 3445555555555555555555555555555553 33444455555555554444433
No 197
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.79 E-value=2.5e-07 Score=71.60 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKAL 321 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 321 (570)
..+..++..|...++.|+|++|++.|+.+....|.. ..+.+.+|.+|+..+++++|+..+++.++++|.++.+..++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 567778888888999999999999999888887765 56788889999999999999999999999999888888888
Q ss_pred HHHHHHHHHcCC
Q psy3014 322 QRIGNCYKKMED 333 (570)
Q Consensus 322 ~~l~~~~~~~~~ 333 (570)
+..|.++..+..
T Consensus 88 Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 88 YMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHhh
Confidence 888888776544
No 198
>KOG4555|consensus
Probab=98.77 E-value=1.2e-07 Score=70.35 Aligned_cols=104 Identities=23% Similarity=0.322 Sum_probs=94.0
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCC----hhHHhH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW----PKGYSR 84 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~ 84 (570)
+....+-..|..+...|+.+.|++.|.+++.+-|..+.+|.+.+.++.-+|+.++|++.+++++++.... ..++..
T Consensus 41 e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQ 120 (175)
T KOG4555|consen 41 KASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQ 120 (175)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 3456778889999999999999999999999999999999999999999999999999999999987543 367899
Q ss_pred HHHHHhhccCHHHHHHHHHHhhccCCCc
Q psy3014 85 KGSALSYLGRYKESISTYEEGLKLDPNN 112 (570)
Q Consensus 85 la~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (570)
+|.+|..+|+-+.|...|+.+-++....
T Consensus 121 Rg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 121 RGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 9999999999999999999998776543
No 199
>KOG4555|consensus
Probab=98.76 E-value=1.7e-06 Score=64.41 Aligned_cols=105 Identities=14% Similarity=0.194 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh-hHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF-KLIAKALQR 323 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~~ 323 (570)
.....+-..|..+...|+.+.|++.|.+++.+.|..+.++.+.+..+.-.|+.++|++.+++++++..+. .....++..
T Consensus 41 e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQ 120 (175)
T KOG4555|consen 41 KASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQ 120 (175)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 3445566778899999999999999999999999999999999999999999999999999999885443 345778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccC
Q psy3014 324 IGNCYKKMEDWKNAKVYFEKSMSEHR 349 (570)
Q Consensus 324 l~~~~~~~~~~~~A~~~~~~~~~~~~ 349 (570)
.|.+|...|+.+.|...|+.+-+...
T Consensus 121 Rg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 121 RGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 99999999999999999999987544
No 200
>KOG2300|consensus
Probab=98.75 E-value=2.6e-05 Score=71.91 Aligned_cols=443 Identities=12% Similarity=0.030 Sum_probs=251.1
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHccCCCC---cchhhchhHHH-hcccCHHHHHHHHhchhccC---CCC---
Q psy3014 11 VSLLKDKGNAALQAN--NFIEAIEAYSEAIKLDGTN---HILFSNRSAAF-AKEGNYEKALEDAEKTISLK---PDW--- 78 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~---p~~--- 78 (570)
+.++..+|..+...| +...++++++..+...|.+ +..+..+|.++ ...++.+.|...++++..+. |+.
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 567888888888888 8889999999998887764 44566677655 45678899999999887553 332
Q ss_pred -hhHHhHHHHHHhhcc-CHHHHHHHHHHhhccCCCcHHH----HHHHHHHHHHhhhccCCCccccccCC--CchHHHH--
Q psy3014 79 -PKGYSRKGSALSYLG-RYKESISTYEEGLKLDPNNEQM----KEAIKDVRNQEMNDMNRGDPFANLFS--DPNIFVQ-- 148 (570)
Q Consensus 79 -~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-- 148 (570)
.++.-.++.+|.... .+..|...+++++++..+.+.. ...++.+.....+...+.+.+.--.. ++..+..
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr 166 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLR 166 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHH
Confidence 356677888888877 7788888899999888776632 34444444442222222221111000 0000000
Q ss_pred ----------hhhCCC--------------CCCCCCChHHHHHHHHHhhCchhHHhhc--cCccHHHHHHHHhcCcccCC
Q psy3014 149 ----------LQLDPR--------------TKPFLSDPSYVQMIKEIQKDPSLMTTKL--KDPRMMTTLSVLLGVNMSST 202 (570)
Q Consensus 149 ----------~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 202 (570)
+-..++ ......++.-.+.++.+--.-... .++ ...+.....-..+....+..
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~-yy~~~gq~rt~k~~lkQLQ~siqti 245 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLS-YYLLPGQVRTVKPALKQLQDSIQTI 245 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH-HHhcccchhhhHHHHHHHHHHHhcc
Confidence 000000 000011111111111110000000 000 01111111111111111100
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----
Q psy3014 203 MGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD----- 277 (570)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----- 277 (570)
....... ....--.+.......++...-.+-++......-...|-+++|.++-++++...
T Consensus 246 st~~~~h---------------~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq 310 (629)
T KOG2300|consen 246 STSSRGH---------------DEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQ 310 (629)
T ss_pred CCCCCCc---------------cccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhccc
Confidence 0000000 00000001111122223333344444444444456677888888888887652
Q ss_pred -CCCH--------HHHHHHHHHHHHhcCHHHHHHHHHHHhhc---ccCh----hHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3014 278 -PTDI--------TFQNNIAAVYFERKEYDQCIEQYIQKIEN---RADF----KLIAKALQRIGNCYKKMEDWKNAKVYF 341 (570)
Q Consensus 278 -p~~~--------~~~~~la~~~~~~~~~~~A~~~~~~~l~~---~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~ 341 (570)
|... ..+-.+..|-.-.|++.+|++....+.+. .|.. ...+..+..+|.....-+.++.|...|
T Consensus 311 ~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf 390 (629)
T KOG2300|consen 311 ADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHF 390 (629)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHH
Confidence 1111 23345667777889999999888777643 3431 123677788899889999999999999
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----------
Q psy3014 342 EKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD---------- 411 (570)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------- 411 (570)
..+.+.....+ -.+....+++.+|.+.|+-+.-.+.++. +.|.+
T Consensus 391 ~~a~k~t~~~d-----------------------l~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~ 444 (629)
T KOG2300|consen 391 IEATKLTESID-----------------------LQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLE 444 (629)
T ss_pred HHHHHhhhHHH-----------------------HHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHH
Confidence 99987432211 1234456789999998876554444443 34432
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC---CCcHHH
Q psy3014 412 PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK------FLKGWIRKGKILQGMQQQSKAIDAYEKALELD---ASNAEA 482 (570)
Q Consensus 412 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~ 482 (570)
..+++..|...+.++++.+|...+.+.++.... ..-.+..+|.+....|+..++.....-++++. ||.+..
T Consensus 445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vq 524 (629)
T KOG2300|consen 445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQ 524 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHH
Confidence 346778888889999999999999999987521 13345668999999999999999998888765 554433
Q ss_pred H---HHHHHHHHHhcC
Q psy3014 483 V---EGYRQCSIAVSS 495 (570)
Q Consensus 483 ~---~~l~~~~~~~~~ 495 (570)
+ ..+..++...|+
T Consensus 525 Lws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 525 LWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 3 345666777776
No 201
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.75 E-value=0.00018 Score=66.18 Aligned_cols=98 Identities=10% Similarity=-0.052 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc-----chhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHH
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH-----ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRK 85 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (570)
--.+-..|.++..++++.+|.+.|.++.+...+++ +++.++-.-.+-+++.+.-...+-..-+..|+.+...+..
T Consensus 6 ~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~ 85 (549)
T PF07079_consen 6 QYLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFK 85 (549)
T ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34566789999999999999999999987765543 3333444444556677776666666667788888888999
Q ss_pred HHHHhhccCHHHHHHHHHHhhcc
Q psy3014 86 GSALSYLGRYKESISTYEEGLKL 108 (570)
Q Consensus 86 a~~~~~~g~~~~A~~~~~~al~~ 108 (570)
|...++.+.+.+|++.+......
T Consensus 86 ~L~~Y~~k~~~kal~~ls~w~~~ 108 (549)
T PF07079_consen 86 ALVAYKQKEYRKALQALSVWKEQ 108 (549)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhh
Confidence 99999999999999988765544
No 202
>KOG0376|consensus
Probab=98.74 E-value=2.2e-08 Score=92.03 Aligned_cols=116 Identities=35% Similarity=0.532 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
.+..+-..|..++..+.|+.|+..|.+||+++|+++..+.+++.++++.+++..|+..+.++++.+|....+|++.|.+.
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 35667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 90 SYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
..++.+.+|...|+....+.|+.+.+...+..+-..
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 999999999999999999999999998888877655
No 203
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.73 E-value=6.3e-05 Score=67.60 Aligned_cols=289 Identities=14% Similarity=0.105 Sum_probs=201.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCc--chhhchhHHHhcccCHHHHHHHHhchhccCCC-ChhHHhHHHHHHhhc
Q psy3014 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNH--ILFSNRSAAFAKEGNYEKALEDAEKTISLKPD-WPKGYSRKGSALSYL 92 (570)
Q Consensus 16 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 92 (570)
..|.+....|+-..|.+.-.++-++-..+. .++..-+..-+-.|+++.|.+-|+..+. +|. ..-.+-.|-.--..+
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~ 167 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRL 167 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhc
Confidence 345666667788888887777765544443 3444456666777888888888887665 332 222222233333467
Q ss_pred cCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHh
Q psy3014 93 GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQ 172 (570)
Q Consensus 93 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (570)
|..+.|+.+-+++....|.-+.++..
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~A------------------------------------------------------ 193 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARA------------------------------------------------------ 193 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHH------------------------------------------------------
Confidence 88888888888888877766554432
Q ss_pred hCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHH
Q psy3014 173 KDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKE 252 (570)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (570)
T Consensus 194 -------------------------------------------------------------------------------- 193 (531)
T COG3898 194 -------------------------------------------------------------------------------- 193 (531)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcC---CCCH---HH--HHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFD---PTDI---TF--QNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~---p~~~---~~--~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
.-......|+++.|+++.+...... ++-. .+ +...+... -.-+...|...-.+++++.|+. ..+-..-
T Consensus 194 tLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdl---vPaav~A 269 (531)
T COG3898 194 TLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDL---VPAAVVA 269 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCcc---chHHHHH
Confidence 2223345899999999998776542 2221 11 11122222 2346788999999999999999 8888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH--
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT-- 402 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-- 402 (570)
+..+++.|+..++-..++.+-+..|.+++ . ...++.+.|+ .++.-++
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~i------------------------a-----~lY~~ar~gd--ta~dRlkRa 318 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPDI------------------------A-----LLYVRARSGD--TALDRLKRA 318 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChHH------------------------H-----HHHHHhcCCC--cHHHHHHHH
Confidence 99999999999999999999985543221 1 1223344454 4444444
Q ss_pred -HHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhh
Q psy3014 403 -EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM-QQQSKAIDAYEKALEL 475 (570)
Q Consensus 403 -~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~ 475 (570)
+.-.+.|++.+..+.++..-+..|++..|..--+.+....|.. .++..++.+-... |+-.++..++-++++-
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4456789999999999999999999999999999999999974 4677788888665 9999999999999874
No 204
>KOG2053|consensus
Probab=98.73 E-value=6.9e-05 Score=74.63 Aligned_cols=228 Identities=15% Similarity=0.103 Sum_probs=147.5
Q ss_pred hcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCcc
Q psy3014 56 AKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDP 135 (570)
Q Consensus 56 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 135 (570)
...+++.+|+..+.+.++..|+...+....|.++.++|+.++|..+++..-...+++.....
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq------------------ 81 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQ------------------ 81 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHH------------------
Confidence 46789999999999999999999999999999999999999999877766555555433322
Q ss_pred ccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCC
Q psy3014 136 FANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDP 215 (570)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (570)
T Consensus 82 -------------------------------------------------------------------------------- 81 (932)
T KOG2053|consen 82 -------------------------------------------------------------------------------- 81 (932)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy3014 216 QPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK 295 (570)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 295 (570)
.+-.+|...|++++|..+|++++..+|+ ......+=.+|.+.+
T Consensus 82 ------------------------------------~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 82 ------------------------------------FLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREK 124 (932)
T ss_pred ------------------------------------HHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHH
Confidence 3556677799999999999999999999 888888888899999
Q ss_pred CHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHH---------HHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Q psy3014 296 EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWK---------NAKVYFEKSMSEHRTPEIRTLISEMEKKIKE 366 (570)
Q Consensus 296 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 366 (570)
.|.+-.+.--+..+..|..+ ...|.-+..+.......+ -|...+++.+....
T Consensus 125 ~yk~qQkaa~~LyK~~pk~~--yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g----------------- 185 (932)
T KOG2053|consen 125 SYKKQQKAALQLYKNFPKRA--YYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG----------------- 185 (932)
T ss_pred HHHHHHHHHHHHHHhCCccc--chHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-----------------
Confidence 88876666666666777762 222333333333332222 23344444444321
Q ss_pred HHHHhcCChhh-HHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Q psy3014 367 EEKKAYIDPVK-AEEAKERGNELFKNGKYADAVKEYTEAI--NRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443 (570)
Q Consensus 367 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 443 (570)
+-. ..-....-.++..+|++++|...+..-+ ...+.+...-..-...+...++|.+-.+...+++...+
T Consensus 186 --------k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 186 --------KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred --------ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 111 1111122234455666666666663222 22233333334445555556666666666666666666
Q ss_pred CC
Q psy3014 444 KF 445 (570)
Q Consensus 444 ~~ 445 (570)
++
T Consensus 258 Dd 259 (932)
T KOG2053|consen 258 DD 259 (932)
T ss_pred cc
Confidence 55
No 205
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.67 E-value=3e-07 Score=73.47 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy3014 429 DLGLKDCETCLKLDPKFLKGWIRKGKILQGMQ-----------QQSKAIDAYEKALELDASNAEAVEGYRQC 489 (570)
Q Consensus 429 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 489 (570)
++|+.-|++|+.++|+...+++.+|.+|..++ .|++|..+|++|...+|+|...+..|..+
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34455555555555555555555555554433 37888999999999999998888777665
No 206
>KOG1914|consensus
Probab=98.66 E-value=0.0004 Score=65.43 Aligned_cols=437 Identities=10% Similarity=0.040 Sum_probs=229.6
Q ss_pred chhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhH
Q psy3014 2 ENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKG 81 (570)
Q Consensus 2 ~~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 81 (570)
++++..|.+.++|+.+-..+-.+ -+++..+.|++.+...|..+.+|.......+..++|+.-...|.+++..-=+ .+.
T Consensus 11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDL 88 (656)
T KOG1914|consen 11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDL 88 (656)
T ss_pred HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhH
Confidence 35677888999999998887666 8999999999999999999999999999999999999999999998864322 333
Q ss_pred HhH-HHHHHhhccCHHHHHH----HHHHhh---ccCCCcHHHHHHHHHHHHHhhhccCCCccccc---cCCCchHHHHhh
Q psy3014 82 YSR-KGSALSYLGRYKESIS----TYEEGL---KLDPNNEQMKEAIKDVRNQEMNDMNRGDPFAN---LFSDPNIFVQLQ 150 (570)
Q Consensus 82 ~~~-la~~~~~~g~~~~A~~----~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 150 (570)
|.. +-.+....|+...+.. .|+-++ -.++....+|......... ..+...+.. +-.-..+++...
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~----vea~gk~ee~QRI~~vRriYqral 164 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEG----VEAVGKYEENQRITAVRRIYQRAL 164 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHc----ccccccHHHHHHHHHHHHHHHHHh
Confidence 322 2233333343333222 222222 2455555556555544433 011000000 000001111111
Q ss_pred hCCCCCCCCCChHHHHHHHHHhhCc------hhHHhhccCccHHHHHHHHh-cCcccCCCCCCCCcccCCCCCCCCCCCC
Q psy3014 151 LDPRTKPFLSDPSYVQMIKEIQKDP------SLMTTKLKDPRMMTTLSVLL-GVNMSSTMGDGDAEEMDVDPQPPSPKKA 223 (570)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (570)
..|-...-.--.++......+.... +....+.+..+....+..+. |......
T Consensus 165 ~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~--------------------- 223 (656)
T KOG1914|consen 165 VTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAP--------------------- 223 (656)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCC---------------------
Confidence 1111100000011111111111100 00001111111222222111 1111100
Q ss_pred CCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHcc------C--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy3014 224 PSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKK------N--FEEALAHYNKAVEFDPTDITFQNNIAAVYFERK 295 (570)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~------~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 295 (570)
. .-.......-...+.|.+.-..-...+ . -..-.=.|++++..-+..+++|+..+..+...+
T Consensus 224 ---------~-vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s 293 (656)
T KOG1914|consen 224 ---------A-VPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEIS 293 (656)
T ss_pred ---------C-CCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Confidence 0 000111112233444444333322211 1 112334578888888888999988777766666
Q ss_pred C--------------HHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcccCC--------
Q psy3014 296 E--------------YDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME---DWKNAKVYFEKSMSEHRT-------- 350 (570)
Q Consensus 296 ~--------------~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~-------- 350 (570)
+ .+++..+|++++..-... ....++.++..-...- .++..-..+++++.....
T Consensus 294 ~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~--~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~ 371 (656)
T KOG1914|consen 294 DLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE--NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQ 371 (656)
T ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhH
Confidence 6 778888888887543221 1333444443322222 355566666666654322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCh
Q psy3014 351 -PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNE-LFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAF 428 (570)
Q Consensus 351 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 428 (570)
-....+..-+..|...|.++-+..-....++..-|.+ |...++..-|...|+-.++..++.+..-.....-+...|+-
T Consensus 372 ~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd 451 (656)
T KOG1914|consen 372 YMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDD 451 (656)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcc
Confidence 1122333445666666666655444333444444433 45667778888888888888888777777777777777888
Q ss_pred HHHHHHHHHHHhc--CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 429 DLGLKDCETCLKL--DPK-FLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 429 ~~A~~~~~~al~~--~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
..|...|++++.. .|+ ....|...-..-..-|+....++.=++-....|
T Consensus 452 ~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 452 NNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 8888888887765 332 234555555555666777777666666555555
No 207
>KOG0545|consensus
Probab=98.63 E-value=2.7e-07 Score=76.81 Aligned_cols=108 Identities=24% Similarity=0.321 Sum_probs=97.1
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------CCCC----------cchhhchhHHHhcccCHHHHHHHHhc
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKL--------DGTN----------HILFSNRSAAFAKEGNYEKALEDAEK 70 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~ 70 (570)
..+..+...|+.++..|+|.+|...|+.|+.. .|.+ ...+.+.+.|++..|+|-++++.+..
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 35678999999999999999999999999753 3443 45678999999999999999999999
Q ss_pred hhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHH
Q psy3014 71 TISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMK 116 (570)
Q Consensus 71 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (570)
++..+|.+..+++.+|.++...-+..+|...|.++++++|.-..+.
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 9999999999999999999999999999999999999999865543
No 208
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.61 E-value=4.5e-08 Score=69.86 Aligned_cols=63 Identities=25% Similarity=0.422 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhc----C---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 413 KYYSNRAACYTKLAAFDLGLKDCETCLKL----D---PKFLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 413 ~~~~~la~~~~~~~~~~~A~~~~~~al~~----~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
.++.++|.+|...|++++|+.+|++++.+ . |....++.++|.++..+|++++|++++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444555555555555555555554433 1 111334455555555555555555555555543
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.60 E-value=1.3e-05 Score=64.01 Aligned_cols=159 Identities=19% Similarity=0.171 Sum_probs=130.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhh-cccChhHHHHHHHHHHHHHHHc
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE-NRADFKLIAKALQRIGNCYKKM 331 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~ 331 (570)
++....+.=+++.+..-..+.+...|.. .-.+.+|....+.|++.+|...|++++. +..++ +..+..++...+..
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d---~a~lLglA~Aqfa~ 137 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHD---AAMLLGLAQAQFAI 137 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC---HHHHHHHHHHHHhh
Confidence 4555566677888888888888888775 4578899999999999999999999984 45666 88899999999999
Q ss_pred CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q psy3014 332 EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD 411 (570)
Q Consensus 332 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 411 (570)
+++..|...+++..+.+|. -..++....+|..+...|++.+|...|+.++...|+
T Consensus 138 ~~~A~a~~tLe~l~e~~pa------------------------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg- 192 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPA------------------------FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG- 192 (251)
T ss_pred ccHHHHHHHHHHHhhcCCc------------------------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-
Confidence 9999999999999984332 134667788899999999999999999999999885
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 412 PKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 412 ~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
+.+....+..+.++|+..+|...+....+
T Consensus 193 ~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 193 PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 67777888999999998888776655543
No 210
>KOG2796|consensus
Probab=98.60 E-value=2.9e-05 Score=65.81 Aligned_cols=222 Identities=12% Similarity=0.056 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------------------HHHHHHHHHHHHHhcCHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD-------------------ITFQNNIAAVYFERKEYDQCIEQYI 305 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~~~~~~A~~~~~ 305 (570)
+....|...-.++.+...+++|..-+...-+.+..+ .......|.+....|...+.+.-+.
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~ 146 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 146 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 556667777777888888888888777666554222 1223344566666777666654443
Q ss_pred HHhh------------cccCh------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Q psy3014 306 QKIE------------NRADF------KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEE 367 (570)
Q Consensus 306 ~~l~------------~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 367 (570)
.... ..|.+ +....+.+.+..++...|+|.-....+.+.++
T Consensus 147 ~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~--------------------- 205 (366)
T KOG2796|consen 147 KLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIK--------------------- 205 (366)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHH---------------------
Confidence 3321 11111 12234555666677777777777777777776
Q ss_pred HHHhcCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 368 EKKAYID-PVKAEEAKERGNELFKNGKYADAVKEYTEAINRN------PDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 368 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
.+ |..+.....+|.+.++.|+.+.|..+|+.+-+.. .....+..+.+.+|...+++.+|...+.+++.
T Consensus 206 -----~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~ 280 (366)
T KOG2796|consen 206 -----YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILR 280 (366)
T ss_pred -----hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccc
Confidence 44 6778888899999999999999999999654332 23456788889999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHH
Q psy3014 441 LDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN---AEAVEGYRQCSIA 492 (570)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~ 492 (570)
.+|.++.+..+.|.|+.-.|+...|++.++.+++..|.. ..+..+|..++.-
T Consensus 281 ~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL 335 (366)
T KOG2796|consen 281 MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYEL 335 (366)
T ss_pred cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999974 3444555555443
No 211
>KOG4642|consensus
Probab=98.59 E-value=4.4e-07 Score=75.37 Aligned_cols=117 Identities=31% Similarity=0.466 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG 458 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 458 (570)
.-+..-|..++...+|..|+.+|.+++.++|..+..|.+.+.||++.++++.+...+.++++++|+....++.+|.+...
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 33455678888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHhcC
Q psy3014 459 MQQQSKAIDAYEKALELD-----ASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 459 ~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~~~ 495 (570)
...|.+|+..++++..+. |.-.++...|..+...--.
T Consensus 91 s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~ 132 (284)
T KOG4642|consen 91 SKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWE 132 (284)
T ss_pred hccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccc
Confidence 999999999999996653 2334666677666655554
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.59 E-value=1.2e-07 Score=67.66 Aligned_cols=67 Identities=21% Similarity=0.391 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC-C---CHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Q psy3014 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINR---NP-D---DPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441 (570)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p-~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 441 (570)
|+...++..+|.++...|++++|+.+|++++++ .+ + ...++.++|.++...|++++|+.++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 667889999999999999999999999999976 22 2 2568999999999999999999999999875
No 213
>KOG4507|consensus
Probab=98.59 E-value=1.4e-05 Score=75.45 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=97.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHH
Q psy3014 385 GNELFKNGKYADAVKEYTEAINRNPDDP-KYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQS 463 (570)
Q Consensus 385 ~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 463 (570)
|......|+...|+.++..|+...|... ....++|.+..+.|-...|-..+.+++.+....+-.++.+|..+..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 4444568999999999999999988643 467889999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 464 KAIDAYEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 464 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
.|++.|++|++++|+++.+...|-.+..+.
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c~~ 723 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRCMQ 723 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHhh
Confidence 999999999999999999998887766533
No 214
>KOG1308|consensus
Probab=98.58 E-value=1.7e-07 Score=82.13 Aligned_cols=164 Identities=22% Similarity=0.410 Sum_probs=100.8
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHH
Q psy3014 388 LFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAID 467 (570)
Q Consensus 388 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 467 (570)
.+..|.+++|++.|..++.++|.....+-.++.++.++++...|+..|..++.++|+....+-..|.....+|++++|..
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34455566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhhCCCc--HHHH------------------------------------------HHHHHHHHHhcC--------
Q psy3014 468 AYEKALELDASN--AEAV------------------------------------------EGYRQCSIAVSS-------- 495 (570)
Q Consensus 468 ~~~~al~~~p~~--~~~~------------------------------------------~~l~~~~~~~~~-------- 495 (570)
++..+.+++-+- ...+ .+.......+..
T Consensus 204 dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e~~~~~r~er~r~~r~~~e~~~~e~~k~~~~~~~~~~~~g 283 (377)
T KOG1308|consen 204 DLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAREEREIKERVERVRYAREPEEMANPEEFKRMLKNPQYRQFLG 283 (377)
T ss_pred HHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHHHhcccccccccccccchhhhcChhhhhhhhccCCCCcccC
Confidence 666665554221 1110 000000000000
Q ss_pred -CH----------------------HHH---------HHHHcCCchHHHhhcCHHHHHHHHHhhcCHHHHHHhhcCHHHH
Q psy3014 496 -NP----------------------EEV---------RKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIA 543 (570)
Q Consensus 496 -~~----------------------e~~---------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (570)
.+ --. +..+..+|++...+.||.+...+....++|.+...|.+||++.
T Consensus 284 ~~p~~M~g~~~~~~~m~~~m~~~~~n~~~~~~p~~~gi~ki~~dpev~aAfqdp~v~aal~d~~~np~n~~kyq~n~kv~ 363 (377)
T KOG1308|consen 284 GFPGGMPGSFPGDKRMTDGMKGFDGNSPVKQQPNQIGISKILSDPEVAAAFQDPEVQAALMDVSQNPANMMKYQNNPKVM 363 (377)
T ss_pred CCcccCCCCCCCccccccccccCCCCCccccCCCcccHhhhcCchHHHHhhcChHHHhhhhhcccChHHHHHhccChHHH
Confidence 00 011 4555667888888888999999999999999999999999999
Q ss_pred HHHHHHHh
Q psy3014 544 SKIQKLVN 551 (570)
Q Consensus 544 ~~~~~~~~ 551 (570)
..+.++..
T Consensus 364 ~~i~kl~~ 371 (377)
T KOG1308|consen 364 DVISKLSQ 371 (377)
T ss_pred HHHHHHHh
Confidence 99998754
No 215
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.58 E-value=3.8e-07 Score=84.53 Aligned_cols=70 Identities=27% Similarity=0.358 Sum_probs=66.8
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKY---YSNRAACYTKLAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~ 442 (570)
.+|+++..++++|.+++..|+|++|+.+|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 678999999999999999999999999999999999999854 9999999999999999999999999973
No 216
>KOG1586|consensus
Probab=98.56 E-value=3e-05 Score=64.55 Aligned_cols=201 Identities=19% Similarity=0.218 Sum_probs=135.1
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc---cChhHHHHHHHHHHHHHHHcCCHHH
Q psy3014 260 KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR---ADFKLIAKALQRIGNCYKKMEDWKN 336 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~~~~l~~~~~~~~~~~~ 336 (570)
.+++++|.++|.++- ..|...++|..|=..|.++-... .+-...+..+...+.+|.+ +++.+
T Consensus 27 ~~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~e 91 (288)
T KOG1586|consen 27 SNKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEE 91 (288)
T ss_pred CcchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHH
Confidence 467888888888763 33444455555555555543221 1111225566666666655 48999
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCC----
Q psy3014 337 AKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKN-GKYADAVKEYTEAINRNPDD---- 411 (570)
Q Consensus 337 A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~---- 411 (570)
|+.+++++++ ++..+|++..| +.-+..+|.+|... .++++|+.+|+++-+.....
T Consensus 92 Av~cL~~aie------Iyt~~Grf~~a--------------Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 92 AVNCLEKAIE------IYTDMGRFTMA--------------AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS 151 (288)
T ss_pred HHHHHHHHHH------HHHhhhHHHHH--------------HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 9999999987 33444444333 22345677777655 88999999999998764332
Q ss_pred --HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Q psy3014 412 --PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL-------KGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482 (570)
Q Consensus 412 --~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 482 (570)
...+...|..-..+++|.+|+..|+++....-++. ..++.-|.|++-..+.-.+...+++..+++|.....
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 23566777778889999999999999887655543 234567888888899999999999999999987665
Q ss_pred HH--HHHHHHHHhcC
Q psy3014 483 VE--GYRQCSIAVSS 495 (570)
Q Consensus 483 ~~--~l~~~~~~~~~ 495 (570)
+. .|..+...+..
T Consensus 232 REckflk~L~~aieE 246 (288)
T KOG1586|consen 232 RECKFLKDLLDAIEE 246 (288)
T ss_pred HHHHHHHHHHHHHhh
Confidence 43 44444444444
No 217
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.54 E-value=2.5e-07 Score=73.85 Aligned_cols=98 Identities=17% Similarity=0.252 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHccCCCCcchhhchhHHHhccc----------CHHHHHHHHhchhccCCCChhHHhHHHHHHhhccC--
Q psy3014 27 FIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEG----------NYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGR-- 94 (570)
Q Consensus 27 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 94 (570)
|+.|.+.++.....+|.+++.+++-|.++..+. -+++|+.-|++|+.++|+..++++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 788999999999999999999999988887663 36778889999999999999999999999987764
Q ss_pred ---------HHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q psy3014 95 ---------YKESISTYEEGLKLDPNNEQMKEAIKDVRN 124 (570)
Q Consensus 95 ---------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 124 (570)
|++|..+|+++...+|++...+..|.....
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 788999999999999999988887776643
No 218
>KOG0376|consensus
Probab=98.52 E-value=1.6e-07 Score=86.52 Aligned_cols=114 Identities=29% Similarity=0.510 Sum_probs=107.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Q psy3014 382 KERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQ 461 (570)
Q Consensus 382 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 461 (570)
-..+...+..++|+.|+..|.++++++|+.+..+.+++..+.+.+++..|+..+.++++.+|....+|+..|.++...++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34567778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 462 QSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 462 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
+.+|+..|++...+.|+++.+...+..|-....+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988776654
No 219
>KOG0545|consensus
Probab=98.51 E-value=3.9e-06 Score=70.08 Aligned_cols=106 Identities=31% Similarity=0.491 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCH----------HHHHHHHHHHHHhcChHHHHHHHHHHH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINR--------NPDDP----------KYYSNRAACYTKLAAFDLGLKDCETCL 439 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~----------~~~~~la~~~~~~~~~~~A~~~~~~al 439 (570)
..++...|+-+++.|+|.+|...|..|+.. .|..+ ..+.+++.|+...|+|-++++.+..++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 557788899999999999999999998742 45543 478899999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 440 KLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 440 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
..+|.+..+++..|.++...=+..+|...|.++++++|.-..+.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 99999999999999999999999999999999999999865554
No 220
>KOG1914|consensus
Probab=98.49 E-value=0.0012 Score=62.28 Aligned_cols=81 Identities=12% Similarity=0.051 Sum_probs=70.6
Q ss_pred HHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHH
Q psy3014 35 SEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114 (570)
Q Consensus 35 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (570)
++-++.+|.+..+|+.+-.-+..+ -+++..+.|++.+...|..+.+|.......+...+|+.-...|.+++...-+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 677889999999999998877666 9999999999999999999999999999999999999999999999865432 44
Q ss_pred HHH
Q psy3014 115 MKE 117 (570)
Q Consensus 115 ~~~ 117 (570)
.|.
T Consensus 88 LW~ 90 (656)
T KOG1914|consen 88 LWK 90 (656)
T ss_pred HHH
Confidence 443
No 221
>KOG0551|consensus
Probab=98.48 E-value=7e-07 Score=77.97 Aligned_cols=109 Identities=32% Similarity=0.529 Sum_probs=98.9
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC----CcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHh
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGT----NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (570)
-+.++.+...|+-|+..++|..|+..|.+.|+..-. +...|.++|.|.+..|+|..|+..+.+++.++|.+..+++
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~ 157 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYI 157 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhh
Confidence 357889999999999999999999999999998544 3567999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHHHHHHhhccCCCcHHHH
Q psy3014 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMK 116 (570)
Q Consensus 84 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (570)
+-|.|++.+.++.+|..+++..+.++.....+.
T Consensus 158 R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~ 190 (390)
T KOG0551|consen 158 RGAKCLLELERFAEAVNWCEEGLQIDDEAKKAI 190 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 999999999999999999999988876655443
No 222
>KOG1258|consensus
Probab=98.47 E-value=0.0016 Score=62.60 Aligned_cols=409 Identities=9% Similarity=-0.008 Sum_probs=246.2
Q ss_pred HHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH-HHhhccCHHHHHHHHHHh
Q psy3014 27 FIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS-ALSYLGRYKESISTYEEG 105 (570)
Q Consensus 27 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~a 105 (570)
.+.+...|...|...|.....|...|..-.+.|..+.+.+.|++++.--|-....|..+-. +--.-|+.+.-...|++|
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3566677778888888888888888999999999999999999999999887777765433 333567777777788888
Q ss_pred hccCCCcH---HHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhc
Q psy3014 106 LKLDPNNE---QMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKL 182 (570)
Q Consensus 106 l~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (570)
......+- ..|.........+.+.......+.+.+..|- ......+....+.+...+.......
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~-------------~~~~~~f~~f~~~l~~~~~~~l~~~ 207 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL-------------HQLNRHFDRFKQLLNQNEEKILLSI 207 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh-------------hHhHHHHHHHHHHHhcCChhhhcCH
Confidence 87765442 2222222221111111111111111111111 0111122222222222111110000
Q ss_pred cCccHHHHHHHHhcCcccCCCCC-CCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhH-HHHHHHHHHHHHHHHc
Q psy3014 183 KDPRMMTTLSVLLGVNMSSTMGD-GDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQ-RSAKKEKELGNEAYKK 260 (570)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~ 260 (570)
...................+. .+........ ... +.. .+.... .........=.++...
T Consensus 208 --d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~--------~~~-----~s~----~l~~~~~~l~~~~~~~~~~~~~s 268 (577)
T KOG1258|consen 208 --DELIQLRSDVAERSKITHSQEPLEELEIGVKD--------STD-----PSK----SLTEEKTILKRIVSIHEKVYQKS 268 (577)
T ss_pred --HHHHHHhhhHHhhhhcccccChhHHHHHHHhh--------ccC-----ccc----hhhHHHHHHHHHHHHHHHHHHhh
Confidence 000000000000000000000 0000000000 000 000 000000 1111112222334444
Q ss_pred cCHHHHHHHHHHHHhc-----CC---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC
Q psy3014 261 KNFEEALAHYNKAVEF-----DP---TDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME 332 (570)
Q Consensus 261 ~~~~~A~~~~~~al~~-----~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 332 (570)
....+.+-.++..+.. .| .+...|......-...|+++...-.|++++--.... ...|...+......|
T Consensus 269 ~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y---~efWiky~~~m~~~~ 345 (577)
T KOG1258|consen 269 EEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY---DEFWIKYARWMESSG 345 (577)
T ss_pred HhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh---HHHHHHHHHHHHHcC
Confidence 5556666667766653 22 335677777888889999999999999999877777 788999998888889
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDP 412 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 412 (570)
+.+-|...+..+.+. ..|..+.++..-+...-..|++..|...++......|+..
T Consensus 346 ~~~~~~~~~~~~~~i-------------------------~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v 400 (577)
T KOG1258|consen 346 DVSLANNVLARACKI-------------------------HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLV 400 (577)
T ss_pred chhHHHHHHHhhhhh-------------------------cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchh
Confidence 999998888887774 5677788888888888999999999999999999889988
Q ss_pred HHHHHHHHHHHHhcChHHHHH---HHHHHHhcCCC---CHHHHHHHHHHH-HhCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy3014 413 KYYSNRAACYTKLAAFDLGLK---DCETCLKLDPK---FLKGWIRKGKIL-QGMQQQSKAIDAYEKALELDASNAEAVEG 485 (570)
Q Consensus 413 ~~~~~la~~~~~~~~~~~A~~---~~~~al~~~p~---~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 485 (570)
.+-........+.|+.+.+.. .+.....-..+ ....+...++.. .-.++.+.|...+.++++..|++...+..
T Consensus 401 ~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~ 480 (577)
T KOG1258|consen 401 EVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLE 480 (577)
T ss_pred hhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHH
Confidence 888888888889999988883 33333322211 133444555544 45688999999999999999999999999
Q ss_pred HHHHHHHhcC
Q psy3014 486 YRQCSIAVSS 495 (570)
Q Consensus 486 l~~~~~~~~~ 495 (570)
+..+....+.
T Consensus 481 ~~~~~~~~~~ 490 (577)
T KOG1258|consen 481 LIRFELIQPS 490 (577)
T ss_pred HHHHHHhCCc
Confidence 9988888875
No 223
>KOG2796|consensus
Probab=98.44 E-value=1.1e-05 Score=68.21 Aligned_cols=141 Identities=20% Similarity=0.253 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhccc-ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHH
Q psy3014 282 TFQNNIAAVYFERKEYDQCIEQYIQKIENRA-DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360 (570)
Q Consensus 282 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 360 (570)
.+.+.+..++.-.|.|.-....+.+.++.+| .. +.....+|.+.++.|+.+.|..+|+..-+....
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~---p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k---------- 244 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE---PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK---------- 244 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCccc---HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh----------
Confidence 4567788888899999999999999998874 44 777888999999999999999999866542110
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
+..-.....+..+.+.++...+++..|...|.+++..+|.++.+.++.|.|....|+...|++..+.++.
T Consensus 245 ----------L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 245 ----------LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred ----------hhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0022234556778889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy3014 441 LDPKF 445 (570)
Q Consensus 441 ~~p~~ 445 (570)
..|..
T Consensus 315 ~~P~~ 319 (366)
T KOG2796|consen 315 QDPRH 319 (366)
T ss_pred cCCcc
Confidence 99974
No 224
>KOG2300|consensus
Probab=98.44 E-value=0.0015 Score=60.85 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C--HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC---------
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPD-D--PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF--------- 445 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--------- 445 (570)
+..+..+|......+.++.|...|..+.+.... + ...-.++|.+|...|+-+.-.+.++. +.|.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHH
Confidence 444555666666666666666666666665332 1 22345567777776654433333332 23332
Q ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH-------HHHHHHHHHHHhcCCHHH------HHHHHcCCchHH
Q psy3014 446 -LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE-------AVEGYRQCSIAVSSNPEE------VRKRAMGDPEVQ 511 (570)
Q Consensus 446 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~~~~~e~------~~~~~~~~p~~~ 511 (570)
..+++..|...+.++++.||...+.+.++.. +..+ .+..|+.+..-+|+..|. ......+.|++.
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~ 522 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIP 522 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCch
Confidence 3456778888899999999999999999987 2222 234456666677775542 355666677765
Q ss_pred -HhhcCHHHHHHHHHhhcCHH
Q psy3014 512 -QILRDPAMRLILEQMQNDPR 531 (570)
Q Consensus 512 -~~~~~~~~~~~~~~~~~~~~ 531 (570)
..|....+..+......+|.
T Consensus 523 vqLws~si~~~L~~a~g~~~~ 543 (629)
T KOG2300|consen 523 VQLWSSSILTDLYQALGEKGN 543 (629)
T ss_pred HHHHHHHHHHHHHHHhCcchh
Confidence 45566666666666665444
No 225
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.43 E-value=6.1e-07 Score=55.17 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQ 488 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 488 (570)
.+++.+|.+|..+|++++|+..|+++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467778888888888888888888888888888888877765
No 226
>KOG1586|consensus
Probab=98.40 E-value=6.8e-05 Score=62.50 Aligned_cols=183 Identities=19% Similarity=0.215 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----CCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh---h
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD-----PTD-ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF---K 315 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~ 315 (570)
+.++.+..-|..|....++..|=..|.++-... .++ ...+...+.|| +..+..+|+.++++++++..+- .
T Consensus 32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~ 110 (288)
T KOG1586|consen 32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFT 110 (288)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHH
Confidence 667888888999999999999999998887652 122 33444555554 4559999999999999876543 2
Q ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCH
Q psy3014 316 LIAKALQRIGNCYKKM-EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394 (570)
Q Consensus 316 ~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (570)
..+.-+..+|.+|... .++++|+.+|+++-+-+...+ ........+...+..-...++|
T Consensus 111 ~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee--------------------s~ssANKC~lKvA~yaa~leqY 170 (288)
T KOG1586|consen 111 MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE--------------------SVSSANKCLLKVAQYAAQLEQY 170 (288)
T ss_pred HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh--------------------hhhhHHHHHHHHHHHHHHHHHH
Confidence 2344556788888765 888888888888876333221 1222234455667777788999
Q ss_pred HHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHH
Q psy3014 395 ADAVKEYTEAINRNPDDP-------KYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKG 448 (570)
Q Consensus 395 ~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 448 (570)
.+|+..|++.....-+++ ..++.-|.|+....+.-.+...+++..+++|.....
T Consensus 171 ~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 171 SKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 999999999987655554 346667888888899999999999999999987654
No 227
>KOG1308|consensus
Probab=98.37 E-value=4e-07 Score=79.97 Aligned_cols=105 Identities=30% Similarity=0.440 Sum_probs=98.0
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
....+......+...+..|++++|++.|..++.++|.....+..++.+++++++...|+..|..++.++|+....|-.+|
T Consensus 110 ~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg 189 (377)
T KOG1308|consen 110 MMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRG 189 (377)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhh
Confidence 34556677778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCC
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPN 111 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~ 111 (570)
.....+|+|.+|...+..+.+++-+
T Consensus 190 ~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 190 YAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred HHHHHhhchHHHHHHHHHHHhcccc
Confidence 9999999999999999999988654
No 228
>KOG3616|consensus
Probab=98.35 E-value=0.00022 Score=69.49 Aligned_cols=242 Identities=13% Similarity=0.096 Sum_probs=132.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYK 329 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 329 (570)
|-.++.-|...|+|+-|.+.|.++- ....-...|-+.|+|.+|.+.-+++...... ...|...+.-..
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~~e~t----~~~yiakaedld 835 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHGPEAT----ISLYIAKAEDLD 835 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcCchhH----HHHHHHhHHhHH
Confidence 3457888889999999999998752 2223345677889999998887776542221 455666667777
Q ss_pred HcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Q psy3014 330 KMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV-KAEEAKERGNELFKNGKYADAVKEYTEAINR- 407 (570)
Q Consensus 330 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~- 407 (570)
..|++.+|.+.|-..-.-...-..+...+..+.-+...++ .+|+ ..+.+..+|.-+...|+...|...|-++-..
T Consensus 836 ehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k---~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~k 912 (1636)
T KOG3616|consen 836 EHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEK---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFK 912 (1636)
T ss_pred hhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHH---hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHH
Confidence 7777777766653322111111111112222222222221 2222 2445556666666666666666665544221
Q ss_pred -----C-----------------CCCHH--HHHH---------HHHHHHHhcChHHHHHHHH------HHHh-----cCC
Q psy3014 408 -----N-----------------PDDPK--YYSN---------RAACYTKLAAFDLGLKDCE------TCLK-----LDP 443 (570)
Q Consensus 408 -----~-----------------p~~~~--~~~~---------la~~~~~~~~~~~A~~~~~------~al~-----~~p 443 (570)
. ..+.. +.+. ...++.+.|-.+.|+...- -+.. ...
T Consensus 913 aavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~ 992 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD 992 (1636)
T ss_pred HHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc
Confidence 0 00110 1110 0122333444444443211 1111 123
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHH----HHHHHHHhcCCHHHHHHHHcC
Q psy3014 444 KFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG----YRQCSIAVSSNPEEVRKRAMG 506 (570)
Q Consensus 444 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----l~~~~~~~~~~~e~~~~~~~~ 506 (570)
..+..+..++..+...|++++|-+.|-.+++++.-|...... .-.-..+.|+.++.+......
T Consensus 993 k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~ 1059 (1636)
T KOG3616|consen 993 KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIH 1059 (1636)
T ss_pred cCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhh
Confidence 456788899999999999999999999999998655433221 122334566666555444433
No 229
>KOG1585|consensus
Probab=98.34 E-value=0.00022 Score=59.95 Aligned_cols=178 Identities=13% Similarity=0.060 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh--h
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDI------TFQNNIAAVYFERKEYDQCIEQYIQKIENRADF--K 315 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--~ 315 (570)
...+..+..-+..|...++|++|..++.++.+-..++. .++-..+.+...+..+.++..+++++....-.+ +
T Consensus 28 dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 28 DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSP 107 (308)
T ss_pred hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence 35567777788888888999999999999986654442 233445556666777777777777776442111 1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHH
Q psy3014 316 LIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYA 395 (570)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (570)
..+..-...+--.....++++|+..|++++......+ ....-.+.+...+.++.+..+|.
T Consensus 108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d--------------------r~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD--------------------RDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc--------------------hHHHHHHHHHHhhhHhhhhHHhh
Confidence 1122222223333445566666666666655222111 01112334445566666666666
Q ss_pred HHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Q psy3014 396 DAVKEYTEAINR------NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441 (570)
Q Consensus 396 ~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 441 (570)
+|-..+.+-... .++....+.....+|....+|..|..+++...++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 666555543221 2222233444444555555666666666655443
No 230
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.34 E-value=0.00017 Score=67.44 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=43.2
Q ss_pred hHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccC
Q psy3014 52 SAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLD 109 (570)
Q Consensus 52 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 109 (570)
..-..+..+.+.-++...+|++++|+++.+|..+|.-. ..-..+|...|+++++..
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAg 230 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAG 230 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHH
Confidence 33445677888899999999999999999998887632 334678888888887654
No 231
>KOG1585|consensus
Probab=98.28 E-value=0.00051 Score=57.89 Aligned_cols=187 Identities=14% Similarity=0.137 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHH
Q psy3014 282 TFQNNIAAVYFERKEYDQCIEQYIQKIENRADF---KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLIS 358 (570)
Q Consensus 282 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 358 (570)
..+..-+.+|...+++++|...+.++.+-..++ ...+.++-..+.+......+.++..+|+++...+-..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~------- 104 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC------- 104 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-------
Confidence 344455677888899999999999998543333 2335666677777778888888888888887632111
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcChHHHH
Q psy3014 359 EMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD------PKYYSNRAACYTKLAAFDLGL 432 (570)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~ 432 (570)
-.|+.+..-...+--.....+.++|+..|++++.+...+ .+.+-..+.++.+...+++|-
T Consensus 105 --------------GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 105 --------------GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred --------------CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 234444444455555677788999999999988764332 345667788899999999998
Q ss_pred HHHHHHHhc------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC----CCcHHHHHHHHHH
Q psy3014 433 KDCETCLKL------DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD----ASNAEAVEGYRQC 489 (570)
Q Consensus 433 ~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~ 489 (570)
..+.+-... .|+....+.....+|....+|..|..+|+...++. |++.....+|-..
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 888764332 34444556666666777789999999999987764 4444444444433
No 232
>KOG0551|consensus
Probab=98.25 E-value=8.4e-06 Score=71.45 Aligned_cols=107 Identities=37% Similarity=0.632 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPD----DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
.+.-+..-|+-|++.++|..|+.+|.+.|+..-. +...|.++|.+....|+|..|+..+.+++.++|.+..++++-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4556667899999999999999999999987544 356899999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
|.|++.+.++.+|..+.+..+.++-+...+.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~ 190 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEAKKAI 190 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 9999999999999999999888776555444
No 233
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.23 E-value=5.7e-05 Score=68.70 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH-CCCHHHHH
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK-NGKYADAV 398 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~ 398 (570)
+|..+.....+.+..+.|...|.++.. ..+....+|...|.+-+. .++.+.|.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------------------------~~~~~~~vy~~~A~~E~~~~~d~~~A~ 56 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--------------------------DKRCTYHVYVAYALMEYYCNKDPKRAR 56 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------CCCS-THHHHHHHHHHHHTCS-HHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--------------------------CCCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 455666666666667788888888875 666677889999999777 56666699
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 399 KEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL---KGWIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 399 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
..|+.+++..|.+..+|......+...|+.+.|...|++++..-|... ..|......-...|+.+......+++.+.
T Consensus 57 ~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 57 KIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877654 57778888888999999999999999999
Q ss_pred CCCcHHHHH
Q psy3014 476 DASNAEAVE 484 (570)
Q Consensus 476 ~p~~~~~~~ 484 (570)
.|++.....
T Consensus 137 ~~~~~~~~~ 145 (280)
T PF05843_consen 137 FPEDNSLEL 145 (280)
T ss_dssp TTTS-HHHH
T ss_pred hhhhhHHHH
Confidence 999665554
No 234
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.22 E-value=3.3e-06 Score=51.91 Aligned_cols=42 Identities=19% Similarity=0.136 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAA 289 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 289 (570)
.++..+|..+...|++++|++.|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467778888888888888888888888888888888887764
No 235
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.22 E-value=0.00023 Score=66.66 Aligned_cols=194 Identities=13% Similarity=0.093 Sum_probs=128.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME 332 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 332 (570)
+-....+..++..-++.-.+|++++|+.+.++..+|.- ......+|.++++++++..... +.........|
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~-------lg~s~~~~~~g 244 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS-------LGKSQFLQHHG 244 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh-------hchhhhhhccc
Confidence 44455677888888888999999999888888777642 2334677778888777643322 11111111111
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD-- 410 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-- 410 (570)
..-+. .... .......+...+|.+..+.|+.++|++.++..++..|.
T Consensus 245 ~~~e~------~~~R-------------------------dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~ 293 (539)
T PF04184_consen 245 HFWEA------WHRR-------------------------DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD 293 (539)
T ss_pred chhhh------hhcc-------------------------ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc
Confidence 11110 0000 01112445567899999999999999999999988775
Q ss_pred CHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHh-CCC---------------HHHHHHHHHHHH
Q psy3014 411 DPKYYSNRAACYTKLAAFDLGLKDCETCLKL-DPKFLKGWIRKGKILQG-MQQ---------------QSKAIDAYEKAL 473 (570)
Q Consensus 411 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~-~g~---------------~~~A~~~~~~al 473 (570)
+..++.++..++...+.|.++...+.+.-++ -|+.+...+..+.+-.+ .|+ -..|.+.+.+|+
T Consensus 294 ~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAv 373 (539)
T PF04184_consen 294 NLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAV 373 (539)
T ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHH
Confidence 4668999999999999999999999886443 35666666655554332 111 245788999999
Q ss_pred hhCCCcHHHHHHH
Q psy3014 474 ELDASNAEAVEGY 486 (570)
Q Consensus 474 ~~~p~~~~~~~~l 486 (570)
+.+|.-+..+...
T Consensus 374 efNPHVp~YLLe~ 386 (539)
T PF04184_consen 374 EFNPHVPKYLLEM 386 (539)
T ss_pred HhCCCCchhhhcc
Confidence 9999888776443
No 236
>KOG0985|consensus
Probab=98.18 E-value=0.0011 Score=67.25 Aligned_cols=77 Identities=21% Similarity=0.259 Sum_probs=40.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHH
Q psy3014 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYK 96 (570)
Q Consensus 17 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 96 (570)
.|.+....+-|++|...|++- .. +..+ +-.....-+..+.|.++.+++ +.+..|-.+|.+....|...
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf-~~---n~~A---~~VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF-DM---NVSA---IQVLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh-cc---cHHH---HHHHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence 345555555666666666552 11 1111 111122345555555555544 34566666777777777777
Q ss_pred HHHHHHHHh
Q psy3014 97 ESISTYEEG 105 (570)
Q Consensus 97 ~A~~~~~~a 105 (570)
+|++.|-++
T Consensus 1122 dAieSyika 1130 (1666)
T KOG0985|consen 1122 DAIESYIKA 1130 (1666)
T ss_pred HHHHHHHhc
Confidence 777666544
No 237
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.18 E-value=4.3e-06 Score=48.13 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 567777888888888888888888888887764
No 238
>KOG2610|consensus
Probab=98.14 E-value=0.00028 Score=62.27 Aligned_cols=170 Identities=14% Similarity=0.045 Sum_probs=130.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHH
Q psy3014 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSE-HRTPEIRTLISEMEKK 363 (570)
Q Consensus 285 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~a 363 (570)
..-+.+....|++.+|...+++.++-.|.+ .-++..--.+++..|+...-...+++++.. .+
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtD---lla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~-------------- 169 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTD---LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNA-------------- 169 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchh---hhhhhhhhhHHHhccchhhhhhHHHHhccccCC--------------
Confidence 334556677888888888888888888887 666666667778888888888888888763 11
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Q psy3014 364 IKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443 (570)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 443 (570)
.-|-...+.-.++..+...|-|++|.+..+++++++|.+..+...++.++...|++.++.+...+.-..-.
T Consensus 170 ---------dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr 240 (491)
T KOG2610|consen 170 ---------DLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR 240 (491)
T ss_pred ---------CCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh
Confidence 23444666677888889999999999999999999999999999999999999999999998877533211
Q ss_pred CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHH--hhCCCcH
Q psy3014 444 KF----LKGWIRKGKILQGMQQQSKAIDAYEKAL--ELDASNA 480 (570)
Q Consensus 444 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~ 480 (570)
.. ..-|..-+.++..-+.|+.|++.|.+-+ ++..++.
T Consensus 241 ~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 241 QSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 11 1234457888888999999999998765 3444555
No 239
>KOG2610|consensus
Probab=98.14 E-value=0.00016 Score=63.74 Aligned_cols=164 Identities=12% Similarity=0.080 Sum_probs=137.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-ccChhHHHHHHHHHHHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN-RADFKLIAKALQRIGNCY 328 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~~~~l~~~~ 328 (570)
...-+-+....|++.+|....++.++..|.+.-++..--.+++.+|+...-...+++++.. +++-+-...+.-.++..+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3344566778899999999999999999999999988889999999999999999999966 777665567777788889
Q ss_pred HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 408 (570)
...|-+++|.+.-+++++ +++.+..+...++.++...|++.++.+...+.-..-
T Consensus 186 ~E~g~y~dAEk~A~ralq--------------------------iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~W 239 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQ--------------------------INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDW 239 (491)
T ss_pred HHhccchhHHHHHHhhcc--------------------------CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccch
Confidence 999999999999999999 899999999999999999999999999877653221
Q ss_pred CCC----HHHHHHHHHHHHHhcChHHHHHHHHHHH
Q psy3014 409 PDD----PKYYSNRAACYTKLAAFDLGLKDCETCL 439 (570)
Q Consensus 409 p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al 439 (570)
... ..-|..-|.++...+.|+.|++.|++-+
T Consensus 240 r~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 240 RQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 111 2235567888889999999999998755
No 240
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.13 E-value=2.7e-06 Score=48.48 Aligned_cols=32 Identities=13% Similarity=0.259 Sum_probs=16.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHH
Q psy3014 435 CETCLKLDPKFLKGWIRKGKILQGMQQQSKAI 466 (570)
Q Consensus 435 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (570)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44455555555555555555555555555443
No 241
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.10 E-value=8.4e-06 Score=46.94 Aligned_cols=33 Identities=36% Similarity=0.613 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
.+++.+|.++..+|++++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 567777778888888888888888888777764
No 242
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.10 E-value=3.2e-06 Score=48.17 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=28.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHH
Q psy3014 400 EYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432 (570)
Q Consensus 400 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 432 (570)
+|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 367888888888888888888888888888886
No 243
>KOG1258|consensus
Probab=98.09 E-value=0.012 Score=56.98 Aligned_cols=124 Identities=7% Similarity=-0.064 Sum_probs=106.7
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-CCCCHHHHHHH
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL-DPKFLKGWIRK 452 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l 452 (570)
++.....|......-...|+++...-.|++++-........|...+.-....|+.+-|-..+..+.++ .|+.+..+..-
T Consensus 293 ~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~ 372 (577)
T KOG1258|consen 293 DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE 372 (577)
T ss_pred cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence 44556677777788889999999999999999888888999999999999999999999888888776 57778888888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCH
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 497 (570)
+.+....|++..|...++++.+-.|+...+-........+.|+..
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~ 417 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLE 417 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchh
Confidence 889999999999999999999888999999888888888888743
No 244
>KOG1550|consensus
Probab=98.07 E-value=0.0018 Score=65.28 Aligned_cols=113 Identities=16% Similarity=0.027 Sum_probs=77.6
Q ss_pred HhHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcc-----CCCCcchhhchhHHHhccc-----CHHHHHHHHhchhc
Q psy3014 9 YEVSLLKDKGNAALQA-----NNFIEAIEAYSEAIKL-----DGTNHILFSNRSAAFAKEG-----NYEKALEDAEKTIS 73 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~ 73 (570)
.++.+...+|.+++.- +|.+.|+.+|+.+... .-..+.+.+.+|.+|.+.. ++..|+.++.++-.
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 3455666677777654 6788899988888761 1125667888888887743 67778888888777
Q ss_pred cCCCChhHHhHHHHHHhhcc---CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 74 LKPDWPKGYSRKGSALSYLG---RYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 74 ~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
.. ++.+.+.+|.++..-. ++..|..+|..|... .+..+...++.++..
T Consensus 322 ~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 322 LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL 372 (552)
T ss_pred cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence 64 5677788888887655 467788888777653 345555666655544
No 245
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.07 E-value=0.00027 Score=64.34 Aligned_cols=139 Identities=14% Similarity=0.047 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE-RKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
+|..+.....+.+..+.|..+|.+|.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+ ...|......
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~---~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD---PDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT----HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHH
Confidence 456666777777778888888888886666677888888888666 456666888888888888888 7777777778
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q psy3014 328 YKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 407 (570)
+...|+.+.|...|++++..-+.. .....+|......-...|+.+...+..+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~-----------------------~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKE-----------------------KQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCH-----------------------HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCch-----------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888888742211 112346666666667777777777777777777
Q ss_pred CCCCHH
Q psy3014 408 NPDDPK 413 (570)
Q Consensus 408 ~p~~~~ 413 (570)
.|.+..
T Consensus 137 ~~~~~~ 142 (280)
T PF05843_consen 137 FPEDNS 142 (280)
T ss_dssp TTTS-H
T ss_pred hhhhhH
Confidence 776433
No 246
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.05 E-value=0.0034 Score=60.11 Aligned_cols=139 Identities=19% Similarity=0.249 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
...+...+.+..+.|+++.|...+.++....+. ..+..+.+.+..+.++...|+..+|
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~----------------------~~~~~~~v~~e~akllw~~g~~~~A 203 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPS----------------------SESLLPRVFLEYAKLLWAQGEQEEA 203 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc----------------------ccCCCcchHHHHHHHHHHcCCHHHH
Confidence 667777888888888888888887777663211 1122456666777777778887888
Q ss_pred HHHHHHHHhcCCC----------------------------------CHHHHHHHHHHHHHh------cChHHHHHHHHH
Q psy3014 398 VKEYTEAINRNPD----------------------------------DPKYYSNRAACYTKL------AAFDLGLKDCET 437 (570)
Q Consensus 398 ~~~~~~al~~~p~----------------------------------~~~~~~~la~~~~~~------~~~~~A~~~~~~ 437 (570)
+..++..+..... ...++..+|...... +..++++..|.+
T Consensus 204 i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~ 283 (352)
T PF02259_consen 204 IQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKE 283 (352)
T ss_pred HHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 7777777661110 122444555555555 566667777777
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCC-----------------HHHHHHHHHHHHhhCCC
Q psy3014 438 CLKLDPKFLKGWIRKGKILQGMQQ-----------------QSKAIDAYEKALELDAS 478 (570)
Q Consensus 438 al~~~p~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~al~~~p~ 478 (570)
++..+|+...+|+.+|..+...=+ ...|+..|-+++...|+
T Consensus 284 a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 284 ATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 777777776677666665543211 13366666666666655
No 247
>KOG1550|consensus
Probab=98.03 E-value=0.002 Score=64.80 Aligned_cols=284 Identities=14% Similarity=0.117 Sum_probs=182.6
Q ss_pred CHHHHHHHHHHHHccCCCCcchhhchhHHHhcc-----cCHHHHHHHHhchhcc-----CCCChhHHhHHHHHHhhcc--
Q psy3014 26 NFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKE-----GNYEKALEDAEKTISL-----KPDWPKGYSRKGSALSYLG-- 93 (570)
Q Consensus 26 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 93 (570)
+...|..+|+.+-.. .+..+...+|.||..- .+.+.|+.+++.+... .-.++.+.+.+|.+|..-.
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888887655 4567778888887654 6888999999888661 1125667888888888743
Q ss_pred ---CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHH
Q psy3014 94 ---RYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKE 170 (570)
Q Consensus 94 ---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (570)
++..|+..|.++..... +.+...++.++..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~--------------------------------------------- 337 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN--PDAQYLLGVLYET--------------------------------------------- 337 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHc---------------------------------------------
Confidence 56778888888776543 3333333333332
Q ss_pred HhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHH
Q psy3014 171 IQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKE 250 (570)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (570)
T Consensus 338 -------------------------------------------------------------------------------- 337 (552)
T KOG1550|consen 338 -------------------------------------------------------------------------------- 337 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----cCHHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFER----KEYDQCIEQYIQKIENRADFKLIAKALQRIGN 326 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (570)
|. ...++..|..+|..|... .+..+.+.+|.||..- .+...|..+++++.+..+ +.+...++.
T Consensus 338 ---g~---~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-----~~A~~~~~~ 404 (552)
T KOG1550|consen 338 ---GT---KERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN-----PSAAYLLGA 404 (552)
T ss_pred ---CC---ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-----hhhHHHHHH
Confidence 00 124678899999988765 5678888888887743 478899999999988773 344555555
Q ss_pred HHHHc-CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHH----CCCHHHHHHH
Q psy3014 327 CYKKM-EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVK-AEEAKERGNELFK----NGKYADAVKE 400 (570)
Q Consensus 327 ~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~A~~~ 400 (570)
.+... +.++.+...+.......- ..+.. ............. ..+...+...
T Consensus 405 ~~~~g~~~~~~~~~~~~~~a~~g~-----------------------~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (552)
T KOG1550|consen 405 FYEYGVGRYDTALALYLYLAELGY-----------------------EVAQSNAAYLLDQSEEDLFSRGVISTLERAFSL 461 (552)
T ss_pred HHHHccccccHHHHHHHHHHHhhh-----------------------hHHhhHHHHHHHhccccccccccccchhHHHHH
Confidence 44433 666666555544433111 00111 1111111111111 1244555555
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHh----cChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-C--CCHHHHHHHHHHHH
Q psy3014 401 YTEAINRNPDDPKYYSNRAACYTKL----AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG-M--QQQSKAIDAYEKAL 473 (570)
Q Consensus 401 ~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~--g~~~~A~~~~~~al 473 (570)
+.++. .+.++.+...+|.+|..- .+++.|...|.++.... ....+++|.++.. . .....|..+|.++.
T Consensus 462 ~~~a~--~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~ 536 (552)
T KOG1550|consen 462 YSRAA--AQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQAS 536 (552)
T ss_pred HHHHH--hccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHH
Confidence 65554 345778888888888765 35899999999988776 8889999999865 1 22789999999998
Q ss_pred hhCCCc
Q psy3014 474 ELDASN 479 (570)
Q Consensus 474 ~~~p~~ 479 (570)
+.+...
T Consensus 537 ~~~~~~ 542 (552)
T KOG1550|consen 537 EEDSRA 542 (552)
T ss_pred hcCchh
Confidence 877653
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.02 E-value=0.0037 Score=61.38 Aligned_cols=113 Identities=15% Similarity=0.013 Sum_probs=80.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcChHHHHHHHHHHH
Q psy3014 364 IKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD----PKYYSNRAACYTKLAAFDLGLKDCETCL 439 (570)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al 439 (570)
...+.......|+.+-..+..|.++...|+.++|+..|++++.....- .-.++.+|+++..+++|++|..++.+..
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 333333344778888888888888888888888888888887533322 3367788888888888888888888888
Q ss_pred hcCCCC-HHHHHHHHHHHHhCCCH-------HHHHHHHHHHHhhC
Q psy3014 440 KLDPKF-LKGWIRKGKILQGMQQQ-------SKAIDAYEKALELD 476 (570)
Q Consensus 440 ~~~p~~-~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~ 476 (570)
+.+.-. ....+..|.|+...|+. ++|.+.|.++-.+.
T Consensus 333 ~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 333 KESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred hccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 765432 23345577888888888 77777777765443
No 249
>KOG3616|consensus
Probab=97.99 E-value=0.0022 Score=62.90 Aligned_cols=172 Identities=16% Similarity=0.178 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHH------hhc----ccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHH
Q psy3014 284 QNNIAAVYFERKEYDQCIEQYIQK------IEN----RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEI 353 (570)
Q Consensus 284 ~~~la~~~~~~~~~~~A~~~~~~~------l~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 353 (570)
+-.-|.++.+..++++|+++|++. +++ .|.. ....-..-|.-+...|+++.|+..|-.+-......+.
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~e--vv~lee~wg~hl~~~~q~daainhfiea~~~~kaiea 741 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEE--VVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEA 741 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHH--HhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHH
Confidence 334455555566666666666542 211 1221 1222334466677788888888877666544333444
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHH
Q psy3014 354 RTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLK 433 (570)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 433 (570)
......+.+|+...+..... ......|-..+.-|...|+|+-|.+.|.++-. ....-..|-+.|+|+.|.+
T Consensus 742 ai~akew~kai~ildniqdq-k~~s~yy~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQ-KTASGYYGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhh-ccccccchHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHH
Confidence 44555666666665543221 12233455678888888999999888877522 2223345667788888877
Q ss_pred HHHHHHhcCCCC-HHHHHHHHHHHHhCCCHHHHHHH
Q psy3014 434 DCETCLKLDPKF-LKGWIRKGKILQGMQQQSKAIDA 468 (570)
Q Consensus 434 ~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~ 468 (570)
.-+++.. |.. ...|...+.-+...|+|.+|...
T Consensus 813 la~e~~~--~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 813 LAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred HHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 7766543 332 23344445444555554444433
No 250
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.98 E-value=0.0021 Score=59.49 Aligned_cols=172 Identities=15% Similarity=-0.005 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc----ccChhHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHhcccCCHHH
Q psy3014 281 ITFQNNIAAVYFERKEYDQCIEQYIQKIEN----RADFKLIAKALQRIGNCYKK---MEDWKNAKVYFEKSMSEHRTPEI 353 (570)
Q Consensus 281 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~ 353 (570)
++....+-.+|....+|+.-++..+..-.. -++. ..+....|.++.+ .|+.++|+..+..++..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~---~~i~~~yafALnRrn~~gdre~Al~il~~~l~~------ 211 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQ---HNIKFQYAFALNRRNKPGDREKALQILLPVLES------ 211 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcc---hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc------
Confidence 455566666788888888888777776544 2233 5566677777777 78888888888775442
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy3014 354 RTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK---------NGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK 424 (570)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 424 (570)
..+.+++++..+|.+|-. ....++|+.+|.++.+.+|+. ..-.|++.++..
T Consensus 212 -------------------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~ 271 (374)
T PF13281_consen 212 -------------------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLML 271 (374)
T ss_pred -------------------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHH
Confidence 444556666666666532 224789999999999999643 344566667776
Q ss_pred hcChHHHHHHHHHHH-h-------c----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH
Q psy3014 425 LAAFDLGLKDCETCL-K-------L----DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 425 ~~~~~~A~~~~~~al-~-------~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 481 (570)
.|...+.....++.. . . .-.+.+.+-.++.+..-.|++++|..++++++.+.|..-.
T Consensus 272 ~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 272 AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 776443332222221 1 1 2234555667888889999999999999999999876543
No 251
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.97 E-value=1.3e-05 Score=46.09 Aligned_cols=33 Identities=33% Similarity=0.489 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGT 43 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 43 (570)
+..|+.+|.+++..|++++|+..|+++++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 456777777777777777777777777777775
No 252
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.96 E-value=0.016 Score=53.86 Aligned_cols=205 Identities=12% Similarity=0.010 Sum_probs=116.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy3014 269 HYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEH 348 (570)
Q Consensus 269 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 348 (570)
.+++++...|-.+++|+.........++-+.|+....+++...|. ....++.+|...++-+.-..+|+++++.-
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps------L~~~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS------LTMFLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc------hheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 467778888888899988888888888888898888888777765 35566777777777666666676665410
Q ss_pred C----------------C----HH------------------HHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH-HH
Q psy3014 349 R----------------T----PE------------------IRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNE-LF 389 (570)
Q Consensus 349 ~----------------~----~~------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~ 389 (570)
. + .+ ...+..-++.|...|-++-...-...+++..-|.+ +.
T Consensus 364 ~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~ 443 (660)
T COG5107 364 KRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY 443 (660)
T ss_pred HHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH
Confidence 0 0 00 11111223444444444433322223333333322 34
Q ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhCCCHHHHHH
Q psy3014 390 KNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF--LKGWIRKGKILQGMQQQSKAID 467 (570)
Q Consensus 390 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~ 467 (570)
..|++.-|...|+-.+...|+++..-...-..+...++-+.|...|++++..-... ...|-.+-..-..-|+...+..
T Consensus 444 ~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~s 523 (660)
T COG5107 444 ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYS 523 (660)
T ss_pred hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence 45666666666666666666665555555555556666666666666555432221 2233333334444555555555
Q ss_pred HHHHHHhhCCCc
Q psy3014 468 AYEKALELDASN 479 (570)
Q Consensus 468 ~~~~al~~~p~~ 479 (570)
.=++..++.|..
T Consensus 524 Le~rf~e~~pQe 535 (660)
T COG5107 524 LEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHcCcH
Confidence 555555555543
No 253
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.96 E-value=0.0017 Score=53.00 Aligned_cols=119 Identities=10% Similarity=0.036 Sum_probs=61.7
Q ss_pred HHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHH
Q psy3014 302 EQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEA 381 (570)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 381 (570)
...++....++.......+-..++..+...|++++|+..++.++....+. .-.+-+-
T Consensus 73 ~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De-----------------------~lk~l~~ 129 (207)
T COG2976 73 AAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDE-----------------------NLKALAA 129 (207)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhH-----------------------HHHHHHH
Confidence 33344444444443334445556666666666666666666666422110 0112334
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC
Q psy3014 382 KERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444 (570)
Q Consensus 382 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 444 (570)
..++.+...+|.+++|+..+...-... -.+......|.++...|+-++|...|++++...++
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 456666666666666666555432110 11233445566666666666666666666666543
No 254
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.96 E-value=1.9e-05 Score=45.41 Aligned_cols=34 Identities=35% Similarity=0.420 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN 44 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 44 (570)
++.++.+|.+++..|+|++|+..|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4567788888888888888888888888888764
No 255
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.93 E-value=0.0029 Score=58.67 Aligned_cols=172 Identities=12% Similarity=0.148 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---hcCHHHHHHHHHHHh-hcccChhHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEF----DPTDITFQNNIAAVYFE---RKEYDQCIEQYIQKI-ENRADFKLI 317 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~~l-~~~~~~~~~ 317 (570)
.+++..++=..|....+|+.-+++.+..-.+ -++.+.+.+.+|.++.+ .|+.++|+..+..++ ...+.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~--- 216 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD--- 216 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC---
Confidence 4566677777899999999999999988776 55677888899999999 999999999999955 445555
Q ss_pred HHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q psy3014 318 AKALQRIGNCYKKM---------EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNEL 388 (570)
Q Consensus 318 ~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (570)
++++..+|.+|... ...++|+..|.++.. .+|+ ...-.+++.++
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--------------------------~~~~-~Y~GIN~AtLL 269 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--------------------------IEPD-YYSGINAATLL 269 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--------------------------CCcc-ccchHHHHHHH
Confidence 88999999988753 123445555555544 6643 23334455555
Q ss_pred HHCCCHHHHHHHHHHHH--------hc----CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHH
Q psy3014 389 FKNGKYADAVKEYTEAI--------NR----NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLK 447 (570)
Q Consensus 389 ~~~~~~~~A~~~~~~al--------~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 447 (570)
...|.-.+.....++.. +. .-.+.+.+-.++.+..-.|++++|+..+++++.+.|....
T Consensus 270 ~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 270 MLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 55554322222222211 11 2235566677888889999999999999999999876543
No 256
>KOG0985|consensus
Probab=97.93 E-value=0.0047 Score=62.95 Aligned_cols=77 Identities=19% Similarity=0.165 Sum_probs=65.6
Q ss_pred HcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHH
Q psy3014 23 QANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTY 102 (570)
Q Consensus 23 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 102 (570)
.-++.+.|.++-+++ +.+.+|..+|.+.++.|...+|++.|-++ +++..|.....+..+.|.|++-+.++
T Consensus 1087 ~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 457788888887776 56889999999999999999999999765 56778888899999999999999999
Q ss_pred HHhhccC
Q psy3014 103 EEGLKLD 109 (570)
Q Consensus 103 ~~al~~~ 109 (570)
.-+-+..
T Consensus 1157 ~MaRkk~ 1163 (1666)
T KOG0985|consen 1157 LMARKKV 1163 (1666)
T ss_pred HHHHHhh
Confidence 8877643
No 257
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.88 E-value=0.043 Score=56.44 Aligned_cols=138 Identities=12% Similarity=0.048 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHH------HHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE------IRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGK 393 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (570)
++..-|......+..++|.+++.++++.-.... ....+......... ..--.....+..+.+.+-.++
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~------~~~l~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQW------LRYLQCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHH------HHHHHHHHHHHHHHHHHHCcC
Confidence 344446666777777788888888876321110 00000000000000 000123345667888889999
Q ss_pred HHHHHHHHHHHHhcC---CC------CHHHHHHHHHHHHHhcChHHHHHHHH--------HHHhcCCCC---HHHHHHHH
Q psy3014 394 YADAVKEYTEAINRN---PD------DPKYYSNRAACYTKLAAFDLGLKDCE--------TCLKLDPKF---LKGWIRKG 453 (570)
Q Consensus 394 ~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~~~~~~A~~~~~--------~al~~~p~~---~~~~~~l~ 453 (570)
+..|......+.... |. .+..++..|..+...|+.+.|...|. .+....+.. .-+..++.
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~ 456 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLA 456 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHH
Confidence 999999988777552 22 36788999999999999999999998 333334433 23345567
Q ss_pred HHHHhCCCHH
Q psy3014 454 KILQGMQQQS 463 (570)
Q Consensus 454 ~~~~~~g~~~ 463 (570)
.++...+...
T Consensus 457 ~I~~~~~~~~ 466 (608)
T PF10345_consen 457 IILQYESSRD 466 (608)
T ss_pred HHhHhhcccc
Confidence 7776655533
No 258
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.87 E-value=0.047 Score=56.22 Aligned_cols=236 Identities=16% Similarity=0.076 Sum_probs=134.3
Q ss_pred ccCHHHHHHHHHHHHhcC--CCCHHHH----HHHHHHHHHhcCHHHHHHHHHHHhhcc------cC-hhHHHHHHHHHHH
Q psy3014 260 KKNFEEALAHYNKAVEFD--PTDITFQ----NNIAAVYFERKEYDQCIEQYIQKIENR------AD-FKLIAKALQRIGN 326 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~~--p~~~~~~----~~la~~~~~~~~~~~A~~~~~~~l~~~------~~-~~~~~~~~~~l~~ 326 (570)
.+++..|++.++...... +.++.+. ...+.++...+..+++++..+++.... |+ ......++..+-.
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 379999999999988765 3554433 344566777788888888888875321 11 1111344444433
Q ss_pred --HHHHcCCHHHHHHHHHHHhc---ccCCH--------H--HHHHHHHHHHHHHHHHHHhc-CChhh--HHHHHHHHHHH
Q psy3014 327 --CYKKMEDWKNAKVYFEKSMS---EHRTP--------E--IRTLISEMEKKIKEEEKKAY-IDPVK--AEEAKERGNEL 388 (570)
Q Consensus 327 --~~~~~~~~~~A~~~~~~~~~---~~~~~--------~--~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~~~~~~~~~ 388 (570)
++...|+++.+...++..-. ..... + +....+.-..+-....-... .+..+ .-++..-|...
T Consensus 232 l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~ 311 (608)
T PF10345_consen 232 LCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHN 311 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHH
Confidence 44567776666665544332 11110 0 00000000000000000000 00111 22344456667
Q ss_pred HHCCCHHHHHHHHHHHHhcC-------CCC-------------------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy3014 389 FKNGKYADAVKEYTEAINRN-------PDD-------------------PKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 389 ~~~~~~~~A~~~~~~al~~~-------p~~-------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 442 (570)
...+..++|.+++.++++.- +.. ....+..+.+..-.+++..|....+.+....
T Consensus 312 ~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~ 391 (608)
T PF10345_consen 312 LYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLC 391 (608)
T ss_pred hhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 77787778888888887541 110 1145566888888999999999888776542
Q ss_pred ---CC------CHHHHHHHHHHHHhCCCHHHHHHHHH--------HHHhhCCCcHHH---HHHHHHHHHHhcC
Q psy3014 443 ---PK------FLKGWIRKGKILQGMQQQSKAIDAYE--------KALELDASNAEA---VEGYRQCSIAVSS 495 (570)
Q Consensus 443 ---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~--------~al~~~p~~~~~---~~~l~~~~~~~~~ 495 (570)
|. .+..++..|..+...|+.+.|...|. .+....+.+.-. ..++..++...+.
T Consensus 392 ~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~ 464 (608)
T PF10345_consen 392 QRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESS 464 (608)
T ss_pred hcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcc
Confidence 22 36778889999999999999999998 555555554332 2345555555554
No 259
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.86 E-value=0.0021 Score=52.55 Aligned_cols=98 Identities=24% Similarity=0.197 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC-HHHHHHHHHH
Q psy3014 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDD---PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF-LKGWIRKGKI 455 (570)
Q Consensus 380 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~ 455 (570)
....++..+...|++++|+..++.++....+. +.+-..+|.+...+|.+++|+..++.... ++. +..-...|.+
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDi 168 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhH
Confidence 44567888999999999999999998654432 44677899999999999999998876533 221 2234568999
Q ss_pred HHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 456 LQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 456 ~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
+...|+.++|+..|+++++.+++.
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCCh
Confidence 999999999999999999998553
No 260
>KOG1464|consensus
Probab=97.84 E-value=0.0043 Score=53.29 Aligned_cols=264 Identities=15% Similarity=0.199 Sum_probs=152.5
Q ss_pred HccCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHHhhccc-----ChhHHHHHHHHHHHHHH
Q psy3014 259 KKKNFEEALAHYNKAVEFDPTDI----TFQNNIAAVYFERKEYDQCIEQYIQKIENRA-----DFKLIAKALQRIGNCYK 329 (570)
Q Consensus 259 ~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-----~~~~~~~~~~~l~~~~~ 329 (570)
...++++|+..|++++++.|... .++..+..+++++++|++-...|.+.+..-. ++. ......+-..-.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS--EKsIN~IlDyiS 116 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS--EKSINSILDYIS 116 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHh
Confidence 35689999999999999988764 4566777889999999999999988774311 110 111112211112
Q ss_pred HcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHH----HHHHHHHHHHHCCCHHHHHHHHHHHH
Q psy3014 330 KMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAE----EAKERGNELFKNGKYADAVKEYTEAI 405 (570)
Q Consensus 330 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~A~~~~~~al 405 (570)
...+.+.-..+|+..+. .+ .+..+.. ....+|.+++..|+|.+-.+.+.+.-
T Consensus 117 tS~~m~LLQ~FYeTTL~-------------------AL-----kdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLD-------------------AL-----KDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred hhhhhHHHHHHHHHHHH-------------------HH-----HhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 22333333333333322 11 1111222 23468999999999888777777665
Q ss_pred hcCCC------------CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHH------HHHHHHHhCCCHHHHHH
Q psy3014 406 NRNPD------------DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWI------RKGKILQGMQQQSKAID 467 (570)
Q Consensus 406 ~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------~l~~~~~~~g~~~~A~~ 467 (570)
+.... -.++|..--..|..+++-.+-...|++++.+...-|..+. -=|..+.+.|+|++|-.
T Consensus 173 ~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 173 QSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred HHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 44221 1235555566788888888888899999987654333222 12456788999999999
Q ss_pred HHHHHHhhC-----CCcHHHHH--HHHHHHHHhcC--CHHHHHHHHcCCchHHHhh------cCHHHHHHHHHhhcCHHH
Q psy3014 468 AYEKALELD-----ASNAEAVE--GYRQCSIAVSS--NPEEVRKRAMGDPEVQQIL------RDPAMRLILEQMQNDPRA 532 (570)
Q Consensus 468 ~~~~al~~~-----p~~~~~~~--~l~~~~~~~~~--~~e~~~~~~~~~p~~~~~~------~~~~~~~~~~~~~~~~~~ 532 (570)
.|=.|++.. |.....+. -|+.++.+.|- .+.+...-...||++..+- .+..+...-..++ ..
T Consensus 253 DFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~NdI~eFE~Il~---~~ 329 (440)
T KOG1464|consen 253 DFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQNNDIIEFERILK---SN 329 (440)
T ss_pred HHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhcccHHHHHHHHH---hh
Confidence 988888753 44444443 34555555443 2222222334455554331 2222111111111 12
Q ss_pred HHHhhcCHHHHHHHHHHHh
Q psy3014 533 LSDHLKNPEIASKIQKLVN 551 (570)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~ 551 (570)
-..++.||-+|+..+.++.
T Consensus 330 ~~~IM~DpFIReh~EdLl~ 348 (440)
T KOG1464|consen 330 RSNIMDDPFIREHIEDLLR 348 (440)
T ss_pred hccccccHHHHHHHHHHHH
Confidence 2246778999998887754
No 261
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.81 E-value=0.012 Score=56.22 Aligned_cols=123 Identities=16% Similarity=0.132 Sum_probs=102.5
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-C--C---
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP----DDPKYYSNRAACYTKLAAFDLGLKDCETCLKL-D--P--- 443 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~--p--- 443 (570)
.......|...+.+..+.|.++.|...+.++....+ ..+.+.+..+.+....|+..+|+..++..+.. . +
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 556778899999999999999999999999987652 25778888999999999999999999888871 0 0
Q ss_pred ----------------------C------CHHHHHHHHHHHHhC------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy3014 444 ----------------------K------FLKGWIRKGKILQGM------QQQSKAIDAYEKALELDASNAEAVEGYRQC 489 (570)
Q Consensus 444 ----------------------~------~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 489 (570)
. ...++..+|...... +..+++...|.++.+++|+...++..++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 0 134566677777777 889999999999999999999999999999
Q ss_pred HHHhcCC
Q psy3014 490 SIAVSSN 496 (570)
Q Consensus 490 ~~~~~~~ 496 (570)
+..+-..
T Consensus 302 ~~~~~~~ 308 (352)
T PF02259_consen 302 NDKLLES 308 (352)
T ss_pred HHHHHHh
Confidence 8887653
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.003 Score=55.37 Aligned_cols=148 Identities=13% Similarity=0.141 Sum_probs=84.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYK 329 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 329 (570)
-+..+.-....|++.+|...|..++...|++..+...++.++...|+.+.|...+...-....+. ....
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~----~~~~------- 205 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK----AAHG------- 205 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh----HHHH-------
Confidence 34455566777888888888888888888888888888888888888888777765543222221 0000
Q ss_pred HcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q psy3014 330 KMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP 409 (570)
Q Consensus 330 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 409 (570)
....++.+.++-...+.. .+++....+|++..+-+.++..+...|+.+.|.+.+-..++.+.
T Consensus 206 ----l~a~i~ll~qaa~~~~~~--------------~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 206 ----LQAQIELLEQAAATPEIQ--------------DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred ----HHHHHHHHHHHhcCCCHH--------------HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 011123333332222111 11112225677777777777777777777777777766666543
Q ss_pred C--CHHHHHHHHHHHHHhc
Q psy3014 410 D--DPKYYSNRAACYTKLA 426 (570)
Q Consensus 410 ~--~~~~~~~la~~~~~~~ 426 (570)
. +..+.-.+-.++...|
T Consensus 268 ~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 268 GFEDGEARKTLLELFEAFG 286 (304)
T ss_pred cccCcHHHHHHHHHHHhcC
Confidence 2 3334444444444444
No 263
>KOG0530|consensus
Probab=97.79 E-value=0.0093 Score=51.15 Aligned_cols=195 Identities=10% Similarity=0.057 Sum_probs=122.4
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH-HHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy3014 262 NFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYD-QCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVY 340 (570)
Q Consensus 262 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 340 (570)
+..+-++++.+.++.+|+|..+|..+-.+....|++. .-++..+.++..+..+ ..+|...-.+....+.++.-+.+
T Consensus 93 dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKN---YHaWshRqW~~r~F~~~~~EL~y 169 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKN---YHAWSHRQWVLRFFKDYEDELAY 169 (318)
T ss_pred HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccc---hhhhHHHHHHHHHHhhHHHHHHH
Confidence 4667788899999999999999998888888888888 7888888888888777 88888888888888889888888
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH-CC-----CHHHHHHHHHHHHhcCCCCHHH
Q psy3014 341 FEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK-NG-----KYADAVKEYTEAINRNPDDPKY 414 (570)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~A~~~~~~al~~~p~~~~~ 414 (570)
....++ .+-.+-.+|...-.+... .| ..+.-+.+..+.+...|++..+
T Consensus 170 ~~~Lle--------------------------~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSa 223 (318)
T KOG0530|consen 170 ADELLE--------------------------EDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESA 223 (318)
T ss_pred HHHHHH--------------------------HhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccH
Confidence 888887 333333333322111111 11 1233455666777778888888
Q ss_pred HHHHHHHHHH-hc--ChHHHHHHHHHHH-hcCCCCHHHHHHHHHHH------HhCCCHH---HHHHHHHHHH-hhCCCcH
Q psy3014 415 YSNRAACYTK-LA--AFDLGLKDCETCL-KLDPKFLKGWIRKGKIL------QGMQQQS---KAIDAYEKAL-ELDASNA 480 (570)
Q Consensus 415 ~~~la~~~~~-~~--~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~------~~~g~~~---~A~~~~~~al-~~~p~~~ 480 (570)
|..|.-++.. .| .+.+-.......+ ......+..+-.+..+| .+.+.-+ +|.+.|+..- +.||-..
T Consensus 224 WnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~ 303 (318)
T KOG0530|consen 224 WNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRK 303 (318)
T ss_pred HHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHH
Confidence 8777777664 33 1333344444333 22333444444444444 1122222 3555555443 5666555
Q ss_pred HHHHH
Q psy3014 481 EAVEG 485 (570)
Q Consensus 481 ~~~~~ 485 (570)
..|..
T Consensus 304 nyW~~ 308 (318)
T KOG0530|consen 304 NYWRH 308 (318)
T ss_pred HHHHH
Confidence 55543
No 264
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.75 E-value=0.00038 Score=56.68 Aligned_cols=98 Identities=28% Similarity=0.320 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----------------------cchhhchhHHHhcccCHHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN----------------------HILFSNRSAAFAKEGNYEKALED 67 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~ 67 (570)
..+.+...|......|+.+.++..+++++.+.... ..+...++..+...|++++|+..
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 34556667888888999999999999999985332 12334566778889999999999
Q ss_pred HhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhc
Q psy3014 68 AEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107 (570)
Q Consensus 68 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 107 (570)
+++++..+|.+..++..+..+|...|+..+|+..|++...
T Consensus 85 ~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 85 LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998754
No 265
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.74 E-value=6.1e-05 Score=43.24 Aligned_cols=33 Identities=33% Similarity=0.592 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
.+|+.+|.+|..+|++++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 467778888888888888888888888887753
No 266
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.68 E-value=0.0071 Score=59.48 Aligned_cols=122 Identities=18% Similarity=0.192 Sum_probs=99.9
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhH-HHHHHHHHHHHHHHcCCHHHHH
Q psy3014 260 KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKL-IAKALQRIGNCYKKMEDWKNAK 338 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 338 (570)
....+.|.+.+....+..|+..-..+..|.++...|+.++|++.+++++......+. ..-+++.+|.++..+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 467889999999999999999999999999999999999999999998854433322 2457789999999999999999
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh-hHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHhc
Q psy3014 339 VYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV-KAEEAKERGNELFKNGKY-------ADAVKEYTEAINR 407 (570)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~A~~~~~~al~~ 407 (570)
.++.+..+ .+.- .....+..|.++...|+. ++|...|.++-..
T Consensus 326 ~~f~~L~~--------------------------~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 326 EYFLRLLK--------------------------ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHh--------------------------ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999988 3333 344556678888888988 7777777777544
No 267
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.67 E-value=0.0017 Score=52.84 Aligned_cols=93 Identities=16% Similarity=0.194 Sum_probs=69.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHhcChHHHHHHHHHHH
Q psy3014 382 KERGNELFKNGKYADAVKEYTEAINRNPDD----------------------PKYYSNRAACYTKLAAFDLGLKDCETCL 439 (570)
Q Consensus 382 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~al 439 (570)
...|......++...++..+.+++.+.... ..+...++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 334556667788888888888888763221 1245567778888999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 440 KLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 440 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
..+|.+..++..+-.+|...|+..+|+..|++...
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888754
No 268
>KOG0890|consensus
Probab=97.66 E-value=0.15 Score=57.64 Aligned_cols=152 Identities=15% Similarity=0.124 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHh---hcccC-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhc
Q psy3014 297 YDQCIEQYIQKI---ENRAD-FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372 (570)
Q Consensus 297 ~~~A~~~~~~~l---~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 372 (570)
..+-+-.+++++ ..+|+ .....++|...|.+....|+++.|...+-++.+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e-------------------------- 1698 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE-------------------------- 1698 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh--------------------------
Confidence 455555555554 22332 235689999999999999999999999888876
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----------------HHHHHHHHHHHHHhcCh--HHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD-----------------PKYYSNRAACYTKLAAF--DLGLK 433 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----------------~~~~~~la~~~~~~~~~--~~A~~ 433 (570)
.. -+.++...|..++..|+-..|+..+++.++.+-.+ ..+...++.-....|++ ..-++
T Consensus 1699 ~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk 1776 (2382)
T KOG0890|consen 1699 SR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILK 1776 (2382)
T ss_pred cc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHH
Confidence 22 56788899999999999999999999999653211 11333444444455553 34577
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHH------------hCCCHHH---HHHHHHHHHhhC
Q psy3014 434 DCETCLKLDPKFLKGWIRKGKILQ------------GMQQQSK---AIDAYEKALELD 476 (570)
Q Consensus 434 ~~~~al~~~p~~~~~~~~l~~~~~------------~~g~~~~---A~~~~~~al~~~ 476 (570)
.|..+.+..|.....++.+|..|. +.|++.. |+-.|.+++...
T Consensus 1777 ~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg 1834 (2382)
T KOG0890|consen 1777 YYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYG 1834 (2382)
T ss_pred HHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhc
Confidence 889999999988777777775443 2455555 555556666554
No 269
>KOG0890|consensus
Probab=97.58 E-value=0.12 Score=58.46 Aligned_cols=118 Identities=13% Similarity=-0.002 Sum_probs=93.1
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC-CC--------
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD-PK-------- 444 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~-------- 444 (570)
+....+.|...|.+....|+++.|...+-.|.+.. -+.++...|..+...|+-..|+..+++.++.+ |+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 45568899999999999999999999999998776 57889999999999999999999999999653 22
Q ss_pred --C------HHHHHHHHHHHHhCCCH--HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 445 --F------LKGWIRKGKILQGMQQQ--SKAIDAYEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 445 --~------~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
. ..+.+.++......|++ ..-+.+|..+.+..|....-++.+|.-+.++
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kl 1802 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKL 1802 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHH
Confidence 1 22344455555566664 4567899999999998888777777554444
No 270
>KOG0530|consensus
Probab=97.55 E-value=0.023 Score=48.82 Aligned_cols=172 Identities=13% Similarity=0.101 Sum_probs=89.4
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHH
Q psy3014 257 AYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK-EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWK 335 (570)
Q Consensus 257 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (570)
+.+...-..|+...+.++.++|.+..+|..+-.++..++ +..+-++.+..+++.+|.+ ..+|...-.+....|++.
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN---YQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN---YQVWHHRRVIVELLGDPS 129 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc---hhHHHHHHHHHHHhcCcc
Confidence 344455566666666677777766666655555544433 4455556666666666666 555655555555555554
Q ss_pred -HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Q psy3014 336 -NAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKY 414 (570)
Q Consensus 336 -~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 414 (570)
.-++..+.++. .+..+..+|...-.+...-+.|+.-+.+..+.++.+-.+-.+
T Consensus 130 ~rELef~~~~l~--------------------------~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSA 183 (318)
T KOG0530|consen 130 FRELEFTKLMLD--------------------------DDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSA 183 (318)
T ss_pred cchHHHHHHHHh--------------------------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccch
Confidence 44455555554 445555555555555555555666555555555554444444
Q ss_pred HHHHHHHHHH-hc-----ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy3014 415 YSNRAACYTK-LA-----AFDLGLKDCETCLKLDPKFLKGWIRKGKILQ 457 (570)
Q Consensus 415 ~~~la~~~~~-~~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 457 (570)
|..+=.+... .| ..+.-+.+..+.+...|++..+|..+.-++.
T Consensus 184 WN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~ 232 (318)
T KOG0530|consen 184 WNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLE 232 (318)
T ss_pred hheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 4332111111 01 1122333444445555555555555444444
No 271
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.50 E-value=0.037 Score=52.16 Aligned_cols=102 Identities=13% Similarity=-0.035 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHH-HHHHHHHHHHHhcChHHHHHHHHHHHhcCC-----CCHHHHH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPD-DPK-YYSNRAACYTKLAAFDLGLKDCETCLKLDP-----KFLKGWI 450 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~ 450 (570)
..+.+.....+.++|-+..|.++.+-.+.++|. +|- +.+.+-....+.++|+=-+..++....... .-|..-+
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~ 182 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF 182 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH
Confidence 445566677888899999999999999999998 665 344444555667777766777666544211 1234566
Q ss_pred HHHHHHHhCCCH---------------HHHHHHHHHHHhhCCCc
Q psy3014 451 RKGKILQGMQQQ---------------SKAIDAYEKALELDASN 479 (570)
Q Consensus 451 ~l~~~~~~~g~~---------------~~A~~~~~~al~~~p~~ 479 (570)
..+.+++..++. +.|...+.+|+...|.-
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 777888888887 89999999999988863
No 272
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.48 E-value=0.16 Score=51.85 Aligned_cols=204 Identities=15% Similarity=0.001 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh---hHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD-----ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF---KLIA 318 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~ 318 (570)
++..-..|.+....|++++|++..+.++..-|.+ ..+...+|.+..-.|++++|..+...+.+....+ ....
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~ 537 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLAL 537 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 3344456888889999999999999999987765 4567788999999999999999999888663322 2224
Q ss_pred HHHHHHHHHHHHcCCHHHH--HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHH
Q psy3014 319 KALQRIGNCYKKMEDWKNA--KVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYAD 396 (570)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~A--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (570)
.+....+.++..+|+...| ...+...-. +-....|.........+.++...-+++.
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~----------------------q~l~q~~~~~f~~~~r~~ll~~~~r~~~ 595 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIRE----------------------QHLEQKPRHEFLVRIRAQLLRAWLRLDL 595 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----------------------HHhhhcccchhHHHHHHHHHHHHHHHhh
Confidence 4555667788888833222 222222211 0001222222223333333333333555
Q ss_pred HHHHHHHHHhc----CCCC--HH-HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC-HHH------HHHHHHHHHhCCCH
Q psy3014 397 AVKEYTEAINR----NPDD--PK-YYSNRAACYTKLAAFDLGLKDCETCLKLDPKF-LKG------WIRKGKILQGMQQQ 462 (570)
Q Consensus 397 A~~~~~~al~~----~p~~--~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~------~~~l~~~~~~~g~~ 462 (570)
+.......++. .|.. .. .++.++.++...|++++|...+.....+-.+. +.. +.-.......+|+.
T Consensus 596 ~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~ 675 (894)
T COG2909 596 AEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDK 675 (894)
T ss_pred hhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCH
Confidence 55555554443 3322 21 33578999999999999999888876653222 111 11122334567899
Q ss_pred HHHHHHHHHH
Q psy3014 463 SKAIDAYEKA 472 (570)
Q Consensus 463 ~~A~~~~~~a 472 (570)
.+|.....+.
T Consensus 676 ~~a~~~l~~s 685 (894)
T COG2909 676 ELAAEWLLKS 685 (894)
T ss_pred HHHHHHHHhc
Confidence 9988888773
No 273
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.019 Score=50.59 Aligned_cols=134 Identities=12% Similarity=0.097 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHH
Q psy3014 281 ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360 (570)
Q Consensus 281 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 360 (570)
...-+.-+.-....|++.+|...+..++...|++ ..+...++.+|...|+.+.|...+...-.......
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~---~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-------- 202 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN---SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-------- 202 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc---chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH--------
Confidence 3444555666788899999999999999999998 88999999999999999999888877544221111
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
..........+.+.....+. ..+++.+..+|++..+.+.+|..+...|+.+.|.+.+-..+.
T Consensus 203 -----------------~~~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 203 -----------------AHGLQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred -----------------HHHHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00000111112222221111 234455667888888888888888888888888887777776
Q ss_pred cCC
Q psy3014 441 LDP 443 (570)
Q Consensus 441 ~~p 443 (570)
.+.
T Consensus 265 ~d~ 267 (304)
T COG3118 265 RDR 267 (304)
T ss_pred hcc
Confidence 644
No 274
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.45 E-value=0.00021 Score=40.92 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGT 43 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 43 (570)
+.++.+|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 56777777777777777777777777777764
No 275
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.45 E-value=0.088 Score=48.08 Aligned_cols=99 Identities=14% Similarity=0.178 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhc----CCC---C-------HHHHHHHHHHHHHhcCHH---HHHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKK-NFEEALAHYNKAVEF----DPT---D-------ITFQNNIAAVYFERKEYD---QCIEQYIQK 307 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~----~p~---~-------~~~~~~la~~~~~~~~~~---~A~~~~~~~ 307 (570)
-+..+++.|......+ +++.|...++++.++ .+. . ..++..++.+|...+.++ +|...++.+
T Consensus 34 La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l 113 (278)
T PF08631_consen 34 LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLL 113 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3556677899999999 999999999999887 211 1 346677888888877765 455555555
Q ss_pred hhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy3014 308 IENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSE 347 (570)
Q Consensus 308 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 347 (570)
-...|+. +..+...-.+..+.++.+.+.+.+.+++..
T Consensus 114 ~~e~~~~---~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 114 ESEYGNK---PEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHhCCCC---cHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 5666776 555544455555588889999999888874
No 276
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.44 E-value=0.098 Score=48.44 Aligned_cols=186 Identities=19% Similarity=0.183 Sum_probs=134.6
Q ss_pred HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----cCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHH---
Q psy3014 258 YKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFER----KEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKK--- 330 (570)
Q Consensus 258 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~--- 330 (570)
...+++..|...+..+-.. .++.....++.+|... .+..+|...|..+.. ... +.+.+.+|.+|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~---~~a~~~lg~~~~~G~g 124 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGL---AEALFNLGLMYANGRG 124 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--ccc---HHHHHhHHHHHhcCCC
Confidence 3578889999999988763 3346777888887654 468889999985543 333 6788889999887
Q ss_pred -cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC-------CHHHHHHHHH
Q psy3014 331 -MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNG-------KYADAVKEYT 402 (570)
Q Consensus 331 -~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~A~~~~~ 402 (570)
..+..+|..+|.++...... .-....+.+|..+..-. +...|...|.
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~-------------------------~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~ 179 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNV-------------------------EAALAMYRLGLAYLSGLQALAVAYDDKKALYLYR 179 (292)
T ss_pred cccCHHHHHHHHHHHHHcCCh-------------------------hHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHH
Confidence 45899999999999874221 11233566666665531 2347888888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHH----hcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC---------------CHH
Q psy3014 403 EAINRNPDDPKYYSNRAACYTK----LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQ---------------QQS 463 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---------------~~~ 463 (570)
++-... ++.+.+.+|.+|.. ..++.+|..+|.++-+... ....+.++ ++...| +..
T Consensus 180 ~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~ 254 (292)
T COG0790 180 KAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKK 254 (292)
T ss_pred HHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHH
Confidence 887765 78888999988865 3478999999999998876 78888888 666655 777
Q ss_pred HHHHHHHHHHhhCCCcH
Q psy3014 464 KAIDAYEKALELDASNA 480 (570)
Q Consensus 464 ~A~~~~~~al~~~p~~~ 480 (570)
.|..++.++....+...
T Consensus 255 ~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 255 QALEWLQKACELGFDNA 271 (292)
T ss_pred HHHHHHHHHHHcCChhH
Confidence 77777777776655433
No 277
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.42 E-value=0.0012 Score=41.80 Aligned_cols=47 Identities=13% Similarity=-0.026 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
+.++.+|..+.++|+|.+|..+.+.+++++|+|..+......+..++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 35677888888888888888888888888888888876666554443
No 278
>KOG2396|consensus
Probab=97.35 E-value=0.15 Score=48.47 Aligned_cols=94 Identities=12% Similarity=0.129 Sum_probs=80.9
Q ss_pred HHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccC-HHHHHHHHHHhhc
Q psy3014 29 EAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGR-YKESISTYEEGLK 107 (570)
Q Consensus 29 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 107 (570)
.-...|+.++...+.++..|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...+.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 445678899988888999998888777777779999999999999999999999999988888777 8899999999999
Q ss_pred cCCCcHHHHHHHHHH
Q psy3014 108 LDPNNEQMKEAIKDV 122 (570)
Q Consensus 108 ~~p~~~~~~~~l~~~ 122 (570)
.+|+++..|...-++
T Consensus 169 ~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRM 183 (568)
T ss_pred cCCCChHHHHHHHHH
Confidence 999999887655444
No 279
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.28 E-value=0.17 Score=47.54 Aligned_cols=182 Identities=10% Similarity=0.072 Sum_probs=98.4
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH------HHHHH-Hhc---CHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 255 NEAYKKKNFEEALAHYNKAVEFDPTDITFQNNI------AAVYF-ERK---EYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l------a~~~~-~~~---~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
....+.++...|..++.-...++|+.....-.+ -.+.. .-. +...=+..++.+-..+-+......-+..-
T Consensus 306 s~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~ 385 (549)
T PF07079_consen 306 SFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFG 385 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 344577888888888888888888865221111 11111 001 11222334444444455555556666777
Q ss_pred HHHHHHcCC-HHHHHHHHHHHhcccCCHH-----HHHHH-HHHHHHHHH--HHHH---------hcCCh---hhHHHHHH
Q psy3014 325 GNCYKKMED-WKNAKVYFEKSMSEHRTPE-----IRTLI-SEMEKKIKE--EEKK---------AYIDP---VKAEEAKE 383 (570)
Q Consensus 325 ~~~~~~~~~-~~~A~~~~~~~~~~~~~~~-----~~~~~-~~~~~a~~~--~~~~---------~~~~~---~~~~~~~~ 383 (570)
+.-+.+.|. -++|+..++.++.-.+..- +.... ..+.+|+.. +.+. ..+.| .+.+.-..
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 777788877 7888888888887554421 11111 111111110 0000 00111 12233333
Q ss_pred H--HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHH
Q psy3014 384 R--GNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437 (570)
Q Consensus 384 ~--~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 437 (570)
+ |..++.+|+|.++..+-.-..++.| ++.++..+|.|.....+|++|..++..
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3 3345667777777776666666777 677777777777777777777776655
No 280
>KOG2041|consensus
Probab=97.27 E-value=0.23 Score=49.13 Aligned_cols=143 Identities=8% Similarity=0.104 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
....++.++|..+.....+++|.++|...-. .-+...+++....|++-..+ ...-|++ ...+-.+
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~l----a~~Lpe~---s~llp~~ 858 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEVL----ARTLPED---SELLPVM 858 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHHH----HHhcCcc---cchHHHH
Confidence 4567888999999999999999999987522 23566778877777654433 3334555 5667778
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
|..+...|.-++|.+.|-+.-.-.........++++.+|.+..++- .-|.........+.-+...++.-+|++..+++
T Consensus 859 a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~--~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 859 ADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRF--QLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 8888888888888888766543222234455667777777765543 22333333333444555666667777766665
No 281
>KOG1310|consensus
Probab=97.27 E-value=0.00073 Score=63.44 Aligned_cols=111 Identities=30% Similarity=0.308 Sum_probs=101.3
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcc---cCHHHHHHHHhchhccCCCChh
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKE---GNYEKALEDAEKTISLKPDWPK 80 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~ 80 (570)
..++++.++.++..|+-.+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+..+..+++++|....
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~k 446 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQK 446 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHH
Confidence 3567889999999999999999999999999999999999999999999998875 5778899999999999999999
Q ss_pred HHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHH
Q psy3014 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114 (570)
Q Consensus 81 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (570)
+|+.++.++..++++.+|+.+...+....|.+..
T Consensus 447 ah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 447 AHFRLARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 9999999999999999999999888888886543
No 282
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.23 E-value=0.043 Score=51.20 Aligned_cols=139 Identities=8% Similarity=-0.001 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3014 263 FEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFE 342 (570)
Q Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 342 (570)
.+.-+.+|++|++.+|++...+..+-.+..+..+.++..+-+++++..+|++..+...|...-......-.++.....|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 56778899999999999999999998899999999999999999999999984433333333333334456778888888
Q ss_pred HHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q psy3014 343 KSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP 409 (570)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 409 (570)
+++..-...... ....-............++..+.......|..+.|+..++-.++.+=
T Consensus 127 ~~l~~L~~~~~~--------~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSG--------RMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhcc--------ccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 887621110000 00000000001112234555666677788888888888888888753
No 283
>KOG2041|consensus
Probab=97.21 E-value=0.14 Score=50.48 Aligned_cols=196 Identities=17% Similarity=0.123 Sum_probs=129.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCC
Q psy3014 254 GNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMED 333 (570)
Q Consensus 254 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 333 (570)
+.+-.--|+|++|.+.|-.+=.. + .-..++...|+|-...+.++..-. +.++.....++..+|..+..+..
T Consensus 741 aei~~~~g~feeaek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~ 811 (1189)
T KOG2041|consen 741 AEISAFYGEFEEAEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMME 811 (1189)
T ss_pred HhHhhhhcchhHhhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHH
Confidence 44444568899999988764221 1 122456677888777776654322 33445567899999999999999
Q ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Q psy3014 334 WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPK 413 (570)
Q Consensus 334 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 413 (570)
|++|.++|...-......+.+..+..+++ ++.....-|++...+-.+|..+...|--++|++.|-+.- .| .
T Consensus 812 We~A~~yY~~~~~~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~p---k 882 (1189)
T KOG2041|consen 812 WEEAAKYYSYCGDTENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LP---K 882 (1189)
T ss_pred HHHHHHHHHhccchHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--Cc---H
Confidence 99999999988776666666666555543 333344567778888889999999999999998876541 22 2
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy3014 414 YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKA 472 (570)
Q Consensus 414 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 472 (570)
+ ....+..+++|.+|.+..++-- -|.-.......+.-+...++..+|++.++++
T Consensus 883 a---Av~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 883 A---AVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred H---HHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 1 1223456677778877665521 2333333344455556677777777777776
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.17 E-value=0.00086 Score=38.83 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 448 GWIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
++..+|.+|..+|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777777777777777777775433
No 285
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.17 E-value=0.00062 Score=38.61 Aligned_cols=31 Identities=10% Similarity=0.203 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 448 GWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666666554
No 286
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.15 E-value=0.00072 Score=38.32 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN 44 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 44 (570)
++++.+|.++...|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 356777777777777777777777777777753
No 287
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.13 E-value=0.0029 Score=46.67 Aligned_cols=93 Identities=22% Similarity=0.327 Sum_probs=77.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCc---chhhchhHHHhcccC-----------HHHHHHHHhchhccCCCChhHH
Q psy3014 17 KGNAALQANNFIEAIEAYSEAIKLDGTNH---ILFSNRSAAFAKEGN-----------YEKALEDAEKTISLKPDWPKGY 82 (570)
Q Consensus 17 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 82 (570)
+|..++..||+-+|+++.+..+...+++. ..+..-|.++..+.. .-.+++++.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57789999999999999999999988876 455666777765432 4568999999999999999999
Q ss_pred hHHHHHHhhccCHHHHHHHHHHhhccC
Q psy3014 83 SRKGSALSYLGRYKESISTYEEGLKLD 109 (570)
Q Consensus 83 ~~la~~~~~~g~~~~A~~~~~~al~~~ 109 (570)
+.+|.-+-....|+++....++++.+.
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 999988777778888888888888753
No 288
>KOG3824|consensus
Probab=97.13 E-value=0.0018 Score=56.53 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=49.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 383 ERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGK 454 (570)
Q Consensus 383 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 454 (570)
..+.-..+.|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+|+.++|.+..++.+.++
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 344445566777777777777777777777777777777666666777777777777777777766666554
No 289
>KOG4507|consensus
Probab=97.13 E-value=0.00099 Score=63.42 Aligned_cols=107 Identities=17% Similarity=0.177 Sum_probs=95.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCC-cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHH
Q psy3014 18 GNAALQANNFIEAIEAYSEAIKLDGTN-HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYK 96 (570)
Q Consensus 18 g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 96 (570)
|.-+...|+...|+.++..|+-..|.. .....++|.+.++.|-.-.|-..+.+++.+....+-.++.+|..+..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 444556899999999999999999874 4567899999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHhhccCCCcHHHHHHHHHHHH
Q psy3014 97 ESISTYEEGLKLDPNNEQMKEAIKDVRN 124 (570)
Q Consensus 97 ~A~~~~~~al~~~p~~~~~~~~l~~~~~ 124 (570)
.|++.|+.+++.+|+++.....+..+..
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999988776655543
No 290
>KOG3824|consensus
Probab=97.12 E-value=0.0017 Score=56.78 Aligned_cols=77 Identities=12% Similarity=0.127 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
+..-...|.-....|+.++|...|+.|+.++|.++.++...|......++.-+|-.+|-+|+.++|.+.+++.++++
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 33334445555567777777777777777777777777777777777777777777777777777777777666554
No 291
>PRK10941 hypothetical protein; Provisional
Probab=97.10 E-value=0.0069 Score=54.01 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy3014 414 YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYR 487 (570)
Q Consensus 414 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 487 (570)
...++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+..-..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 45566677777888888888888888888888877777888888888888888888888888887776654333
No 292
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.10 E-value=0.039 Score=51.44 Aligned_cols=146 Identities=12% Similarity=0.038 Sum_probs=101.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcC------------HHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHH
Q psy3014 268 AHYNKAVEFDPTDITFQNNIAAVYFERKE------------YDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWK 335 (570)
Q Consensus 268 ~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (570)
.-|++.+..+|.+..+|..+....-..-. .+.-+.++++|++.+|++ ...+..+-.+..+....+
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~---~~L~l~~l~~~~~~~~~~ 82 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS---ERLLLGYLEEGEKVWDSE 82 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHH
Confidence 45788899999999999988876554422 456778888999888888 666666666666777777
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhcCCC--
Q psy3014 336 NAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK---NGKYADAVKEYTEAINRNPD-- 410 (570)
Q Consensus 336 ~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p~-- 410 (570)
+....+++++. .+|.++..|...-..... .-.++.....|.+++..-..
T Consensus 83 ~l~~~we~~l~--------------------------~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~ 136 (321)
T PF08424_consen 83 KLAKKWEELLF--------------------------KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRR 136 (321)
T ss_pred HHHHHHHHHHH--------------------------HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhh
Confidence 77777888777 677777777665444332 33567777777777653110
Q ss_pred ----------------CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy3014 411 ----------------DPKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 411 ----------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 442 (570)
...++..++....+.|..+.|+..++..++++
T Consensus 137 ~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 137 SGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 02245556666677777888888887777764
No 293
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.09 E-value=0.22 Score=45.47 Aligned_cols=67 Identities=10% Similarity=-0.005 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHccCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccc
Q psy3014 246 SAKKEKELGNEAYKKKNFE---EALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 312 (570)
...++..++.++...+.++ +|....+.+-...|+.+..+...-.+....++.+.+.+.+.+++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 3455566777777766654 566666677777888888886666666668999999999999986543
No 294
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.05 E-value=0.16 Score=47.03 Aligned_cols=167 Identities=17% Similarity=0.084 Sum_probs=125.4
Q ss_pred HHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Q psy3014 291 YFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKM----EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKE 366 (570)
Q Consensus 291 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 366 (570)
....+.+..+...+..+-... . ......++.+|... .+..+|..+|..+.
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~--~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--------------------- 104 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELG--D---AAALALLGQMYGAGKGVSRDKTKAADWYRCAA--------------------- 104 (292)
T ss_pred ccccccHHHHHHHHHHhhhcC--C---hHHHHHHHHHHHhccCccccHHHHHHHHHHHh---------------------
Confidence 345677888888888876522 1 35677777777653 46778888888554
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhc-------ChHHHHHH
Q psy3014 367 EEKKAYIDPVKAEEAKERGNELFK----NGKYADAVKEYTEAINRNPDD-PKYYSNRAACYTKLA-------AFDLGLKD 434 (570)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~ 434 (570)
....+...+.+|.++.. ..+..+|..+|.++.+..... ..+.+.+|.+|..-+ +...|...
T Consensus 105 -------~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~ 177 (292)
T COG0790 105 -------ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYL 177 (292)
T ss_pred -------hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHH
Confidence 34567778889999887 459999999999999875433 344788888887642 23479999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 435 CETCLKLDPKFLKGWIRKGKILQG----MQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 435 ~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
|.++-... ++.+.+.+|.+|.. ..++.+|..+|.++-+... ..+...++ ++..-|.
T Consensus 178 ~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~ 237 (292)
T COG0790 178 YRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGE 237 (292)
T ss_pred HHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCC
Confidence 99988766 77889999988855 3489999999999999876 88888888 6666664
No 295
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.05 E-value=0.48 Score=48.65 Aligned_cols=212 Identities=13% Similarity=0.069 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--C-------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChh
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT--D-------ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFK 315 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 315 (570)
..+......+.......++.+|..++.++...-|. . ....-..|.+....|+.++|++..+.++..-|...
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 34556667788888999999999999988765433 1 24445678888999999999999999998766553
Q ss_pred --HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC
Q psy3014 316 --LIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGK 393 (570)
Q Consensus 316 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (570)
....++..+|.+..-.|++++|..+...+.+.....+ ...-...+....+.++..+|+
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--------------------~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--------------------VYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--------------------cHHHHHHHHHHHHHHHHHhhH
Confidence 2356677889999999999999999988876322111 122234445566788888883
Q ss_pred --HHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc----CCCCHH---HHHHHHHHHHhCC
Q psy3014 394 --YADAVKEYTEAI----NRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL----DPKFLK---GWIRKGKILQGMQ 460 (570)
Q Consensus 394 --~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~---~~~~l~~~~~~~g 460 (570)
+.+....|...- ...|-+.-.....+.++...-+++.+.......++. .|.... .++.++.+.+..|
T Consensus 553 ~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~G 632 (894)
T COG2909 553 VARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRG 632 (894)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcC
Confidence 333333333222 223433334444444444444467666666666554 233222 2347999999999
Q ss_pred CHHHHHHHHHHHHhhC
Q psy3014 461 QQSKAIDAYEKALELD 476 (570)
Q Consensus 461 ~~~~A~~~~~~al~~~ 476 (570)
+.++|...+.....+-
T Consensus 633 dl~~A~~~l~~~~~l~ 648 (894)
T COG2909 633 DLDKALAQLDELERLL 648 (894)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999998887654
No 296
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.13 Score=41.40 Aligned_cols=147 Identities=12% Similarity=0.146 Sum_probs=89.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhH-HHHHHHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTD--ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKL-IAKALQRIGNC 327 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~~l~~~ 327 (570)
+.-+.-+.+.+..++|+..|...-+..-.. .-+....|.+....|+...|+..|..+-...|.... .-.+...-+.+
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 344555566777888888877766654333 234466677777788888888888777654443211 12334445566
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q psy3014 328 YKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 407 (570)
+...|-|++-..-.+..-.. .+|-...+...+|..-++.|++.+|.++|.....
T Consensus 142 LvD~gsy~dV~srvepLa~d-------------------------~n~mR~sArEALglAa~kagd~a~A~~~F~qia~- 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGD-------------------------GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN- 195 (221)
T ss_pred HhccccHHHHHHHhhhccCC-------------------------CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-
Confidence 66777776655554443221 4555566667777777888888888888877665
Q ss_pred CCCCHHHHHHHHHHHH
Q psy3014 408 NPDDPKYYSNRAACYT 423 (570)
Q Consensus 408 ~p~~~~~~~~la~~~~ 423 (570)
+...|....+.+.+..
T Consensus 196 Da~aprnirqRAq~ml 211 (221)
T COG4649 196 DAQAPRNIRQRAQIML 211 (221)
T ss_pred cccCcHHHHHHHHHHH
Confidence 4444555555555443
No 297
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.01 E-value=0.01 Score=42.94 Aligned_cols=67 Identities=13% Similarity=0.098 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHhcCCH
Q psy3014 431 GLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN--AEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 431 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~ 497 (570)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+|+. ..+...+-.+...+|...
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 3556777777888888888888888888888888888888888877655 777777777777777643
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.95 E-value=0.0092 Score=47.67 Aligned_cols=89 Identities=17% Similarity=0.011 Sum_probs=82.3
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
..-+..++.........++.+++...+.-.--+.|+.+..-..-|..++..|+|.+|+..++.+....|..+.+--.++.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCHH
Q psy3014 88 ALSYLGRYK 96 (570)
Q Consensus 88 ~~~~~g~~~ 96 (570)
|+..+|+..
T Consensus 87 CL~~~~D~~ 95 (160)
T PF09613_consen 87 CLYALGDPS 95 (160)
T ss_pred HHHHcCChH
Confidence 999999853
No 299
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.94 E-value=0.13 Score=41.26 Aligned_cols=115 Identities=15% Similarity=-0.017 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQ 457 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 457 (570)
...+.....+-...++.+++...+...--+.|+.+.+-..-|+++...|+|.+|+..++.+....|..+.+--.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 44556666677778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 458 GMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 458 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
.+|+..= ..+-..+++..| ++.+......++..-+
T Consensus 90 ~~~D~~W-r~~A~evle~~~-d~~a~~Lv~~Ll~~~~ 124 (160)
T PF09613_consen 90 ALGDPSW-RRYADEVLESGA-DPDARALVRALLARAD 124 (160)
T ss_pred HcCChHH-HHHHHHHHhcCC-ChHHHHHHHHHHHhcc
Confidence 8887531 122334444443 4555554444444433
No 300
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.89 E-value=0.39 Score=45.09 Aligned_cols=78 Identities=17% Similarity=0.049 Sum_probs=62.9
Q ss_pred HHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCC
Q psy3014 33 AYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDP 110 (570)
Q Consensus 33 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 110 (570)
-++.-++.+|++...|+.+..-+..+|.+++-.+.+++...-.|-.+.+|...-..-...+++..-...|-+++...-
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 566778889999999999999999999999999999999888887777776665555566778877778888776543
No 301
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.88 E-value=0.053 Score=46.83 Aligned_cols=96 Identities=18% Similarity=0.189 Sum_probs=62.3
Q ss_pred hcCHHHHHHHHHHHhh----cccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Q psy3014 294 RKEYDQCIEQYIQKIE----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEK 369 (570)
Q Consensus 294 ~~~~~~A~~~~~~~l~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 369 (570)
...+++|++.|.-++- ...+....+..+..+|++|...|+.+....++++|+. .|.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~-------------------~y~~ 150 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALE-------------------FYEE 150 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH-------------------HHHH
Confidence 4456677777666652 2233335588899999999999997776666666655 2222
Q ss_pred HhcC------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q psy3014 370 KAYI------DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 370 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 408 (570)
+... .-+...+.+.+|.+..+.|++++|..+|.+++...
T Consensus 151 a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 151 AYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 2211 11335567777888888888888888888877653
No 302
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.86 E-value=0.0017 Score=37.55 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy3014 13 LLKDKGNAALQANNFIEAIEAYSEAIK 39 (570)
Q Consensus 13 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 39 (570)
+|..+|.++...|+|++|+.+|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356777777777777777777777543
No 303
>KOG2396|consensus
Probab=96.82 E-value=0.024 Score=53.55 Aligned_cols=88 Identities=19% Similarity=0.157 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhC
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQ-QSKAIDAYEKALELD 476 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~ 476 (570)
...|+.++...+.++..|.....-..+.+.+.+--..|.+++..+|+++..|..-|.-.+..+. .+.|...|.+++..+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 3445555555555555555555544555555555555555555566655555555554444443 555555566666666
Q ss_pred CCcHHHHHH
Q psy3014 477 ASNAEAVEG 485 (570)
Q Consensus 477 p~~~~~~~~ 485 (570)
|+++..|..
T Consensus 171 pdsp~Lw~e 179 (568)
T KOG2396|consen 171 PDSPKLWKE 179 (568)
T ss_pred CCChHHHHH
Confidence 665555543
No 304
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.79 E-value=0.021 Score=42.29 Aligned_cols=92 Identities=16% Similarity=0.248 Sum_probs=70.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcC-----------hHHHHHHHHHHHhcCCCCHHHH
Q psy3014 384 RGNELFKNGKYADAVKEYTEAINRNPDDP---KYYSNRAACYTKLAA-----------FDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 384 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~ 449 (570)
++.-++..|++-+|++..+..+..++++. ..+..-|.++..+.. .-.|++.|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 35667889999999999999998877765 455566777765543 3468888899999999888888
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
+.+|.-+-...-|+++..--+++|.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888776677778888777777765
No 305
>PRK10941 hypothetical protein; Provisional
Probab=96.79 E-value=0.02 Score=51.07 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKI 455 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 455 (570)
....++-.++...++++.|+.+.+..+.+.|+++.-+..+|.+|.++|.+..|...++..++..|+++.+-.....+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 34556778899999999999999999999999999999999999999999999999999999999998876654444
No 306
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.78 E-value=0.02 Score=42.50 Aligned_cols=94 Identities=23% Similarity=0.406 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCC------------CcchhhchhHHHhcccCHHHHHHHHhchhc-------cC
Q psy3014 15 KDKGNAALQANNFIEAIEAYSEAIKLDGT------------NHILFSNRSAAFAKEGNYEKALEDAEKTIS-------LK 75 (570)
Q Consensus 15 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~ 75 (570)
...|...+..|-|++|...++++.....+ +.-++..|+.++..+|+|++++...++++. ++
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 34456667889999999999999986432 245677889999999999999888877774 44
Q ss_pred CC----ChhHHhHHHHHHhhccCHHHHHHHHHHhhcc
Q psy3014 76 PD----WPKGYSRKGSALSYLGRYKESISTYEEGLKL 108 (570)
Q Consensus 76 p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 108 (570)
.+ ...+.+.+|..+..+|+.++|+..|+.+-+.
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44 3456678999999999999999999988653
No 307
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.74 E-value=0.0082 Score=38.00 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHH
Q psy3014 414 YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWI 450 (570)
Q Consensus 414 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 450 (570)
.++.+|..++++|+|++|..+.+.+++..|++..+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3455555556666666666666666666666555443
No 308
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.74 E-value=0.0069 Score=43.77 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=46.8
Q ss_pred HHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCC--hhHHhHHHHHHhhccCHHHHHHHHH
Q psy3014 30 AIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW--PKGYSRKGSALSYLGRYKESISTYE 103 (570)
Q Consensus 30 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~ 103 (570)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+|++ ..+.-.+-.++..+|.-+.-...|+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 3566777777888888888888888888888888888888888777664 4455555555555555444333333
No 309
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.65 E-value=0.16 Score=42.52 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccC---hhHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD---FKLIA 318 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~ 318 (570)
.-..++..+|..|.+.|+.++|++.|.++....... .+.++.+..+.+..+++.....++.++-..... .....
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 456788899999999999999999999988765332 467788888899999999999999888644222 22223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy3014 319 KALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT 350 (570)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 350 (570)
.....-|..+...++|..|...|-.+......
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~ 145 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSLSTFTS 145 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccCcCCCC
Confidence 44555677888899999999999888776543
No 310
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.63 E-value=0.0031 Score=35.32 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 448 GWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
++..+|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666666554
No 311
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.62 E-value=0.11 Score=38.75 Aligned_cols=91 Identities=18% Similarity=0.298 Sum_probs=68.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHhcChHHHHHHHHHHHh-------cCCCC
Q psy3014 385 GNELFKNGKYADAVKEYTEAINRNPD------------DPKYYSNRAACYTKLAAFDLGLKDCETCLK-------LDPKF 445 (570)
Q Consensus 385 ~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~-------~~p~~ 445 (570)
|.-.+..|-|++|...+.+++..... +.-.+-.|+..+..+|+|++++...++++. ++.+.
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 34456778999999999999876432 234677889999999999998887777774 45554
Q ss_pred HHH----HHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 446 LKG----WIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 446 ~~~----~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
... .+..|..+...|+.++|+..|+.+-++
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 444 466889999999999999999998664
No 312
>KOG3364|consensus
Probab=96.61 E-value=0.067 Score=40.97 Aligned_cols=85 Identities=16% Similarity=0.078 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHhcC---hHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy3014 411 DPKYYSNRAACYTKLAA---FDLGLKDCETCLK-LDPK-FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485 (570)
Q Consensus 411 ~~~~~~~la~~~~~~~~---~~~A~~~~~~al~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 485 (570)
.....+++|+++.+..+ ..+.+..++..++ -.|. .-+..+.++.-+.+.|+|+.|+.+....++..|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45567788888776554 5677888888886 4444 34566778888888888888888888888888888888766
Q ss_pred HHHHHHHhcC
Q psy3014 486 YRQCSIAVSS 495 (570)
Q Consensus 486 l~~~~~~~~~ 495 (570)
-..+..++.+
T Consensus 111 k~~ied~itk 120 (149)
T KOG3364|consen 111 KETIEDKITK 120 (149)
T ss_pred HHHHHHHHhh
Confidence 6655555543
No 313
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.59 E-value=0.034 Score=46.43 Aligned_cols=108 Identities=10% Similarity=0.101 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHH
Q psy3014 281 ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360 (570)
Q Consensus 281 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 360 (570)
..++..+|..|.+.|+.+.|++.|.++.............+..+..+....+++.....++.++-.....+.-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d------- 108 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD------- 108 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch-------
Confidence 3577899999999999999999999999877766667888999999999999999999999888763322100
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q psy3014 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 408 (570)
...........|..++..++|.+|...|-.+....
T Consensus 109 -------------~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 109 -------------WERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred -------------HHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 00112234445777778888888888887775443
No 314
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.55 E-value=0.095 Score=49.50 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHH-HHHHHHHHHhcCHHHHHHHHHHHhhccc-C-hhHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT-DITFQ-NNIAAVYFERKEYDQCIEQYIQKIENRA-D-FKLIAKA 320 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~-~~la~~~~~~~~~~~A~~~~~~~l~~~~-~-~~~~~~~ 320 (570)
.--.+.+.....+.+.|-+..|.++.+-.+.++|. |+-.. +.+-....+.++|+--++.++....... + ....+..
T Consensus 101 ~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~ 180 (360)
T PF04910_consen 101 QFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF 180 (360)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH
Confidence 44566677788889999999999999999999999 76544 4444455677888888888877654211 1 1112455
Q ss_pred HHHHHHHHHHcCCH---------------HHHHHHHHHHhcc
Q psy3014 321 LQRIGNCYKKMEDW---------------KNAKVYFEKSMSE 347 (570)
Q Consensus 321 ~~~l~~~~~~~~~~---------------~~A~~~~~~~~~~ 347 (570)
-+..+.++...++. +.|...+.+|+..
T Consensus 181 a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 181 AFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred HHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 67778888888887 7888888888873
No 315
>KOG1310|consensus
Probab=96.55 E-value=0.01 Score=56.09 Aligned_cols=106 Identities=25% Similarity=0.326 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL---AAFDLGLKDCETCLKLDPKFLKGWIRKG 453 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~ 453 (570)
..+....-|.-.+..+....|+..|.+++...|.....+.+.+.++.+. |+.-.|+..+..+++++|....+|+.++
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 3444444455555566788999999999999999999999999998875 4566788999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Q psy3014 454 KILQGMQQQSKAIDAYEKALELDASNAEA 482 (570)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 482 (570)
.++..++++.+|+.+...+....|.+...
T Consensus 453 ~aL~el~r~~eal~~~~alq~~~Ptd~a~ 481 (758)
T KOG1310|consen 453 RALNELTRYLEALSCHWALQMSFPTDVAR 481 (758)
T ss_pred HHHHHHhhHHHhhhhHHHHhhcCchhhhh
Confidence 99999999999999999888888865443
No 316
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.13 Score=49.92 Aligned_cols=125 Identities=19% Similarity=0.074 Sum_probs=102.8
Q ss_pred CChhhHHHHHH--HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHH-HHhcCCCCHHHH
Q psy3014 373 IDPVKAEEAKE--RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET-CLKLDPKFLKGW 449 (570)
Q Consensus 373 ~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~ 449 (570)
.++.++..+.. +...+...++...+.-.+..++..+|++..+..++|......|....+...+.. +....|++....
T Consensus 60 ~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~ 139 (620)
T COG3914 60 INDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFL 139 (620)
T ss_pred cCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHH
Confidence 55555555333 477777888988999999999999999999999999999888887777766665 888889887766
Q ss_pred HHH------HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCH
Q psy3014 450 IRK------GKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 450 ~~l------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 497 (570)
..+ |.....+|+..++....+++..+.|.++.+...+.....+.-...
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~ 193 (620)
T COG3914 140 GHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP 193 (620)
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch
Confidence 555 888999999999999999999999999999888888866665543
No 317
>KOG3783|consensus
Probab=96.47 E-value=0.43 Score=46.04 Aligned_cols=91 Identities=10% Similarity=-0.007 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCC----hhHHhHHHHHHhhccCHHHHHHHHH
Q psy3014 28 IEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW----PKGYSRKGSALSYLGRYKESISTYE 103 (570)
Q Consensus 28 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 103 (570)
....+.+.......|+++...+..+..+...|+.+.|+..++..+. +.. .-.++.+|.++..+.+|..|-..+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444555555567899999999999999999998999999999888 332 3456788999999999999999999
Q ss_pred HhhccCCCcHHHHHHHH
Q psy3014 104 EGLKLDPNNEQMKEAIK 120 (570)
Q Consensus 104 ~al~~~p~~~~~~~~l~ 120 (570)
...+.+.-....+..++
T Consensus 328 ~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHhhhhhhHHHHHHHH
Confidence 88887665555555444
No 318
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.36 E-value=0.0058 Score=51.20 Aligned_cols=60 Identities=25% Similarity=0.436 Sum_probs=42.8
Q ss_pred HHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH
Q psy3014 422 YTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 422 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 481 (570)
..+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|...|++.++++|.+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 345567777777777777777777777777777777777777777777777777776543
No 319
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.35 E-value=1.9 Score=46.15 Aligned_cols=101 Identities=17% Similarity=0.136 Sum_probs=83.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchhhchhHHHhcc----c---CHHHHHHHHhchhccCCCChhHHhHH
Q psy3014 16 DKGNAALQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKE----G---NYEKALEDAEKTISLKPDWPKGYSRK 85 (570)
Q Consensus 16 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~l 85 (570)
...++++..+.|++|+..|++.-..-|.. .++.+..|.+.+.+ | .+++|+..|++. .-.|.-|--|...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 558 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGK 558 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhH
Confidence 34567788899999999999999988875 46777888877643 2 578888888874 4467777889999
Q ss_pred HHHHhhccCHHHHHHHHHHhhccCCCcHHHHH
Q psy3014 86 GSALSYLGRYKESISTYEEGLKLDPNNEQMKE 117 (570)
Q Consensus 86 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 117 (570)
|.+|..+|++++-+++|.-+++..|+++..-.
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 99999999999999999999999999986543
No 320
>KOG4814|consensus
Probab=96.29 E-value=0.36 Score=47.41 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDD------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKG 453 (570)
Q Consensus 380 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 453 (570)
++.+-+.-+++..+|..++++|...+..-|.+ .....+++.||..+.+.+.|.+++++|-+.+|.++-.-...-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 44556777889999999999999999876654 457788999999999999999999999999999998888888
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 454 KILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
.+....|+-++|+.+..+.....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhhh
Confidence 89999999999999988876543
No 321
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.25 E-value=0.0069 Score=50.77 Aligned_cols=62 Identities=31% Similarity=0.572 Sum_probs=51.0
Q ss_pred HHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHH
Q psy3014 53 AAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114 (570)
Q Consensus 53 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (570)
......++.+.|.+.|.+++.+.|.+...|+++|....+.|+++.|...|++.++++|.+..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34566788888888888888888888888888888888888888888888888888887643
No 322
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.23 E-value=0.0078 Score=33.57 Aligned_cols=31 Identities=39% Similarity=0.571 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy3014 13 LLKDKGNAALQANNFIEAIEAYSEAIKLDGT 43 (570)
Q Consensus 13 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 43 (570)
.++.+|.+++..|++++|+..|+++++.+|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666666554
No 323
>KOG1464|consensus
Probab=96.21 E-value=0.38 Score=41.88 Aligned_cols=194 Identities=12% Similarity=0.108 Sum_probs=105.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh---hcccChhHHHHHH
Q psy3014 252 ELGNEAYKKKNFEEALAHYNKAVEF-------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKI---ENRADFKLIAKAL 321 (570)
Q Consensus 252 ~la~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l---~~~~~~~~~~~~~ 321 (570)
.+..+.++.++|++-...|.+.+.. +-. ......+-..-....+.+--...|+..+ +-..+...-....
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS-EKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS-EKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 4556667778888777777776542 111 1111111111112223333333333333 2222221113344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Q psy3014 322 QRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEY 401 (570)
Q Consensus 322 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 401 (570)
..+|.+|+..++|.+-.+.+++.-..+.+.+-...+. ......++|..-.++|..+.+-.+-...|
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~k--------------KGtQLLEiYAlEIQmYT~qKnNKkLK~lY 214 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQK--------------KGTQLLEIYALEIQMYTEQKNNKKLKALY 214 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhh--------------ccchhhhhHhhHhhhhhhhcccHHHHHHH
Confidence 6789999999999888877777665443321100000 12223445555567777777777777888
Q ss_pred HHHHhcCCCC--HHH----HHHHHHHHHHhcChHHHHHHHHHHHhcC-----CCCHHH--HHHHHHHHHhCC
Q psy3014 402 TEAINRNPDD--PKY----YSNRAACYTKLAAFDLGLKDCETCLKLD-----PKFLKG--WIRKGKILQGMQ 460 (570)
Q Consensus 402 ~~al~~~p~~--~~~----~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~--~~~l~~~~~~~g 460 (570)
++++.+...- |.+ .-.=|..+.+.|++++|-..|-.|.+.. |....+ |.-+|..+.+.|
T Consensus 215 eqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 215 EQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 8888765432 222 2223556778888999988888887653 333333 344666666655
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.21 E-value=0.074 Score=41.78 Aligned_cols=88 Identities=17% Similarity=0.027 Sum_probs=79.0
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSA 88 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 88 (570)
.-+..+..........++.+++...+...--+.|+.+..-..-|.+++..|+|.+|+..++...+..|..+-+.-.++.|
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 34567777888888899999999999999889999999999999999999999999999999999888888888899999
Q ss_pred HhhccCHH
Q psy3014 89 LSYLGRYK 96 (570)
Q Consensus 89 ~~~~g~~~ 96 (570)
+..+|+.+
T Consensus 88 L~al~Dp~ 95 (153)
T TIGR02561 88 LNAKGDAE 95 (153)
T ss_pred HHhcCChH
Confidence 99999864
No 325
>KOG3364|consensus
Probab=96.14 E-value=0.22 Score=38.24 Aligned_cols=79 Identities=11% Similarity=0.155 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHCC---CHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHH
Q psy3014 377 KAEEAKERGNELFKNG---KYADAVKEYTEAIN-RNPD-DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR 451 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 451 (570)
.....+++++++.+.. +..+.+.+++..++ .+|. ..+..+.+|..+++.++|+.|+.+.+..++..|++.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4567788888888665 45678899999996 4554 45688899999999999999999999999999999887655
Q ss_pred HHHH
Q psy3014 452 KGKI 455 (570)
Q Consensus 452 l~~~ 455 (570)
.-.+
T Consensus 111 k~~i 114 (149)
T KOG3364|consen 111 KETI 114 (149)
T ss_pred HHHH
Confidence 4433
No 326
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.03 E-value=0.16 Score=40.02 Aligned_cols=82 Identities=10% Similarity=-0.125 Sum_probs=58.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q psy3014 381 AKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQ 460 (570)
Q Consensus 381 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 460 (570)
+......-...++.+++...+...--+.|+.+.+-..-|+++...|+|.+|+..++...+-.+..+..--.++.|+..+|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33344444557777777777777767777777777777777777777777777777777776666666667777777777
Q ss_pred CH
Q psy3014 461 QQ 462 (570)
Q Consensus 461 ~~ 462 (570)
+.
T Consensus 93 Dp 94 (153)
T TIGR02561 93 DA 94 (153)
T ss_pred Ch
Confidence 64
No 327
>KOG3783|consensus
Probab=95.88 E-value=1.9 Score=41.90 Aligned_cols=66 Identities=11% Similarity=0.005 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhCCCc
Q psy3014 414 YYSNRAACYTKLAAFDLGLKDCETCLKL---DPK----FLKGWIRKGKILQGMQQ-QSKAIDAYEKALELDASN 479 (570)
Q Consensus 414 ~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~----~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~ 479 (570)
-++.+|.++..+|+...|..+|..+++. ..+ .|.++|.+|.++..+|. ..++..++.+|-+...++
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 4677899999999999999999988743 111 36788999999999988 999999999998877554
No 328
>KOG1463|consensus
Probab=95.87 E-value=1.3 Score=40.08 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=72.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHH---HHHHHHHHHHHhcChHH--HHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 382 KERGNELFKNGKYADAVKEYTEAINRNPD---DPK---YYSNRAACYTKLAAFDL--GLKDCETCLKLDPKFLKGWIRKG 453 (570)
Q Consensus 382 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~---~~~~la~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~l~ 453 (570)
..-|.++....+|..|..+|-++++-... +.. ++-.+-.|-...+..++ ++-.-+.+++.......+....+
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavA 292 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVA 292 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHH
Confidence 34477777779999999999999875321 223 22233334444555554 44455667777777888888888
Q ss_pred HHHHh--CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 454 KILQG--MQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 454 ~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
..+.+ +.+|+.|+..|..=+..|| -+..++..++-.+
T Consensus 293 eA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Lyd~l 331 (411)
T KOG1463|consen 293 EAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLYDNL 331 (411)
T ss_pred HHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHHHHH
Confidence 88855 4689999999988887665 4555555554443
No 329
>KOG2422|consensus
Probab=95.83 E-value=1.1 Score=43.57 Aligned_cols=88 Identities=14% Similarity=0.162 Sum_probs=63.6
Q ss_pred ccCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----hc------------
Q psy3014 260 KKNFEEALAHYNKAVEF------------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKI-----EN------------ 310 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l-----~~------------ 310 (570)
...|++|...|.-+... .|.+...+..++.+...+|+.+-|....++++ ..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45678888888877665 46667889999999999999998888888877 11
Q ss_pred ----ccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy3014 311 ----RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSE 347 (570)
Q Consensus 311 ----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 347 (570)
.|.+....-+++..-..+.+.|-+..|.++++-.++.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL 371 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL 371 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 2222333444455555666778888888888888873
No 330
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.83 E-value=0.024 Score=49.98 Aligned_cols=85 Identities=20% Similarity=0.221 Sum_probs=54.2
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHhhCCCcHH
Q psy3014 403 EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR-KGKILQGMQQQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 481 (570)
++....|+++..|...+..-.+.|-|.+--..|.+++..+|.+.+.|.. .+.-+...++++.+...|.+++.++|++|.
T Consensus 98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 3444456666666666666666666666666677777777777666655 344455666777777777777777777776
Q ss_pred HHHHHH
Q psy3014 482 AVEGYR 487 (570)
Q Consensus 482 ~~~~l~ 487 (570)
+|..+-
T Consensus 178 iw~eyf 183 (435)
T COG5191 178 IWIEYF 183 (435)
T ss_pred HHHHHH
Confidence 665443
No 331
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=1.3 Score=39.02 Aligned_cols=170 Identities=14% Similarity=0.153 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhh---cccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q psy3014 286 NIAAVYFERKEYDQCIEQYIQKIE---NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362 (570)
Q Consensus 286 ~la~~~~~~~~~~~A~~~~~~~l~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (570)
.+..+++..|.|.+|+......+. ...+-.....++..-..+|....+..++...+..+-.....
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans------------ 197 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANS------------ 197 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhc------------
Confidence 445556666666666665555441 11111122444455555555555555554444433321110
Q ss_pred HHHHHHHHhcCChhhHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHH-----HHHHHHHHHHhcChHHHH
Q psy3014 363 KIKEEEKKAYIDPVKAE--EAKERGNELFKNGKYADAVKEYTEAINRNPD---DPKY-----YSNRAACYTKLAAFDLGL 432 (570)
Q Consensus 363 a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~-----~~~la~~~~~~~~~~~A~ 432 (570)
+ ..|.... .-..-|..+....+|..|..+|-++++-... +..+ |..+..+. .+..++-.
T Consensus 198 --------~-YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIM--lN~~~evk 266 (421)
T COG5159 198 --------A-YCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIM--LNRREEVK 266 (421)
T ss_pred --------c-CCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH--HhhHHHHH
Confidence 0 2333322 2233466777888999999999999875332 2322 23333333 33333322
Q ss_pred HHH--HHHHh-cCCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhhCCC
Q psy3014 433 KDC--ETCLK-LDPKFLKGWIRKGKILQG--MQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 433 ~~~--~~al~-~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~ 478 (570)
..+ +..++ .+.....+....+..+-. +.+|..|+..|..-+.-||-
T Consensus 267 ~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 267 AVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence 222 23333 344566777777777743 46888999888887766654
No 332
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.73 E-value=0.042 Score=50.66 Aligned_cols=113 Identities=14% Similarity=0.204 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccC--------CCC----------cchhhchhHHHhcccCHHHHHHHHhchhc
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLD--------GTN----------HILFSNRSAAFAKEGNYEKALEDAEKTIS 73 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 73 (570)
..-..-|...+++++|..|..-|..+|++- |.. ...--.+..||+++++.+-|+....+.|.
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 344555667778888888888888887752 221 12234688999999999999999999999
Q ss_pred cCCCChhHHhHHHHHHhhccCHHHHHHHHHHhh---ccCCCcHHHHHHHHHHHH
Q psy3014 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGL---KLDPNNEQMKEAIKDVRN 124 (570)
Q Consensus 74 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~ 124 (570)
++|.+..-++..|.|+..+.+|.+|-+.+--+. -+...+......+..+|.
T Consensus 257 lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyW 310 (569)
T PF15015_consen 257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYW 310 (569)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHH
Confidence 999999999999999999999999987665443 333433333333444443
No 333
>KOG4814|consensus
Probab=95.69 E-value=0.044 Score=53.33 Aligned_cols=98 Identities=10% Similarity=0.094 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHH
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN------HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRK 85 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (570)
..+...|...|+..+|..++++|...+..-|.+ +.....++.||+.+.+.+.|.+++++|-+.+|.++-..+..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 467788899999999999999999999987765 44567889999999999999999999999999999888888
Q ss_pred HHHHhhccCHHHHHHHHHHhhccC
Q psy3014 86 GSALSYLGRYKESISTYEEGLKLD 109 (570)
Q Consensus 86 a~~~~~~g~~~~A~~~~~~al~~~ 109 (570)
-.+....|.-++|+.+........
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhh
Confidence 888889999999999988776543
No 334
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.63 E-value=0.95 Score=36.69 Aligned_cols=115 Identities=14% Similarity=0.030 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhcChHHHHHHHHHHH-hcCCCCHHHHHHH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPD----DPKYYSNRAACYTKLAAFDLGLKDCETCL-KLDPKFLKGWIRK 452 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l 452 (570)
.-+.+..|.+....|+...|+..|.++-.-.|- .-.+...-+.++...|-|+.-....+..- ..+|-...+.-.|
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL 173 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL 173 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence 445677889999999999999999998765442 12345566778888999988766655432 2345455677789
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
|..-++.|++..|..+|.+... |..-+....+.+++...+
T Consensus 174 glAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 174 GLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred hHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 9999999999999999999887 555555555555554443
No 335
>KOG0529|consensus
Probab=95.50 E-value=1.5 Score=41.08 Aligned_cols=133 Identities=12% Similarity=0.089 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC----hHHHHH
Q psy3014 360 MEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGK--YADAVKEYTEAINRNPDDPKYYSNRAACYTKLAA----FDLGLK 433 (570)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----~~~A~~ 433 (570)
++..+.....++..+|+...+|+.+..++.+.+. +..=+..++++++.+|.+..+|..+=.+...... ..+=++
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ 170 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE 170 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH
Confidence 3444445555555999999999999999987764 6888999999999999998887776655554433 466778
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHh------CCC------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy3014 434 DCETCLKLDPKFLKGWIRKGKILQG------MQQ------QSKAIDAYEKALELDASNAEAVEGYRQCSIA 492 (570)
Q Consensus 434 ~~~~al~~~p~~~~~~~~l~~~~~~------~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 492 (570)
+..+++..++.+..+|.....++.. .|+ ...-++.-..|+-.+|++..+|....+.+.+
T Consensus 171 ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 171 FTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred HHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 8899999999999999888777652 232 3455677778888999999999886666655
No 336
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.34 E-value=0.6 Score=40.42 Aligned_cols=65 Identities=14% Similarity=0.037 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHCCCHHH-------HHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Q psy3014 377 KAEEAKERGNELFKNGKYAD-------AVKEYTEAINRNPD------DPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~-------A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 441 (570)
.+..+..+|++|...|+.+. |...|.+++..... ...+.+.+|.+..+.|++++|..+|.+++..
T Consensus 117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 45666777777777777443 33333333332211 1345555666666666666666666665554
No 337
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.32 E-value=0.16 Score=47.93 Aligned_cols=125 Identities=10% Similarity=0.062 Sum_probs=69.5
Q ss_pred HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHH
Q psy3014 258 YKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNA 337 (570)
Q Consensus 258 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 337 (570)
...|+.-.|-.-...++...|.+|......+.+...+|.|+.+...+..+-..-... ..+...+-.....+|+++.|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~---~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT---DSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC---chHHHHHHHhhhchhhHHHH
Confidence 345666666666666666666666666666666666666666666655443332222 23334444445555566655
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q psy3014 338 KVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD 411 (570)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 411 (570)
...-.-.+. ..-+++++...-+......|-+++|...+++.+.++|..
T Consensus 377 ~s~a~~~l~--------------------------~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 377 LSTAEMMLS--------------------------NEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhc--------------------------cccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 555554444 333344444444444455555666666666666665543
No 338
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.26 E-value=0.095 Score=49.30 Aligned_cols=122 Identities=12% Similarity=0.115 Sum_probs=65.0
Q ss_pred hcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy3014 294 RKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYI 373 (570)
Q Consensus 294 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 373 (570)
.|+.-.|-+-+..++...|.. +......+.+...+|.|+.+...+..+-..
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~---p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-------------------------- 352 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQD---PVLIQLRSVIFSHLGYYEQAYQDISDVEKI-------------------------- 352 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCC---chhhHHHHHHHHHhhhHHHHHHHhhchhhh--------------------------
Confidence 455555555555666655555 444555566666666666666555433321
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 444 (570)
-.....+...+-......|++++|.....-.+.-.-.++++....|.....+|-+++|..++++.+.++|.
T Consensus 353 ~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 353 IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 11111222333344455566666666655555544455555555555555566666666666666666554
No 339
>KOG1839|consensus
Probab=95.15 E-value=0.38 Score=51.61 Aligned_cols=169 Identities=11% Similarity=0.081 Sum_probs=118.5
Q ss_pred HHHHHHHHhcCHHHHHH------HHHHHh-hcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHH
Q psy3014 286 NIAAVYFERKEYDQCIE------QYIQKI-ENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLIS 358 (570)
Q Consensus 286 ~la~~~~~~~~~~~A~~------~~~~~l-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 358 (570)
..|......|.+.+|.+ .+.... .+.|+. ...+..++.++...|++++|+..-.++.-.......
T Consensus 937 e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~---~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g----- 1008 (1236)
T KOG1839|consen 937 EQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEV---ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG----- 1008 (1236)
T ss_pred hhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhH---HHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc-----
Confidence 34444455556665555 333222 334555 888889999999999999998888777653322100
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcChHH
Q psy3014 359 EMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR--------NPDDPKYYSNRAACYTKLAAFDL 430 (570)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~ 430 (570)
...|+....+..++...+..++...|...+.++..+ .|.-.....+++.++...++++.
T Consensus 1009 -------------~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~ 1075 (1236)
T KOG1839|consen 1009 -------------KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADT 1075 (1236)
T ss_pred -------------CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHH
Confidence 045667777888888888888999999998888764 55566677889999999999999
Q ss_pred HHHHHHHHHhcCCC--------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 431 GLKDCETCLKLDPK--------FLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 431 A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
|+.+.+.|+..... ....+..+++.+..+|++..|....+....+
T Consensus 1076 al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1076 ALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 99999999885322 3445566777777777777777666665543
No 340
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=1.6 Score=42.76 Aligned_cols=72 Identities=6% Similarity=-0.083 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy3014 266 ALAHYNKAVEFDPTDITFQNN--IAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVY 340 (570)
Q Consensus 266 A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 340 (570)
++..+...+.++|.++..+.. ++..+...+....+.-....++..+|++ ..+..+++......|....+...
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~L~~ale~~~~~~~~~~~ 123 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPEN---CPAVQNLAAALELDGLQFLALAD 123 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCccc---chHHHHHHHHHHHhhhHHHHHHH
Confidence 444444444455555544322 2444444555555555555555555555 55555555555444444443333
No 341
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.86 E-value=0.073 Score=31.83 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
.++.++|.+|..+|++++|..++++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 456778888888888888888888887653
No 342
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.77 E-value=4.2 Score=39.29 Aligned_cols=89 Identities=12% Similarity=0.085 Sum_probs=64.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME 332 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 332 (570)
+-.++....++.-....+.+.+... .+-.+++.++.||... ..++-...+++..+.+-++ ...-..++..|.. +
T Consensus 72 ~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnD---vv~~ReLa~~yEk-i 145 (711)
T COG1747 72 LLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFND---VVIGRELADKYEK-I 145 (711)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchh---HHHHHHHHHHHHH-h
Confidence 3334444444555556677777665 5567788899999888 6677788888888888777 6666677777766 8
Q ss_pred CHHHHHHHHHHHhcc
Q psy3014 333 DWKNAKVYFEKSMSE 347 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~ 347 (570)
+.+.+..+|.+++..
T Consensus 146 k~sk~a~~f~Ka~yr 160 (711)
T COG1747 146 KKSKAAEFFGKALYR 160 (711)
T ss_pred chhhHHHHHHHHHHH
Confidence 888999999998864
No 343
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.67 E-value=0.3 Score=42.98 Aligned_cols=70 Identities=19% Similarity=0.154 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy3014 415 YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484 (570)
Q Consensus 415 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 484 (570)
..++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|+..++..++..|+.+.+-.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 3444556667777888888888888888887777777788888888888888888887777777766543
No 344
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=94.63 E-value=0.079 Score=31.61 Aligned_cols=39 Identities=33% Similarity=0.669 Sum_probs=35.0
Q ss_pred CchHHHhhcCHHHHHHHHHhhcCHHHHHHhhc-CHHHHHH
Q psy3014 507 DPEVQQILRDPAMRLILEQMQNDPRALSDHLK-NPEIASK 545 (570)
Q Consensus 507 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 545 (570)
+|++...+.+|.+..++..+..+|.....+++ +|.++..
T Consensus 1 dP~~~~~l~~P~~~~~l~~~~~nP~~~~~~~~~nP~~~~~ 40 (41)
T smart00727 1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQENPQLLQL 40 (41)
T ss_pred CHHHHHHHcCHHHHHHHHHHHHCHHHHHHHHHhCHHhHhh
Confidence 57888889999999999999999999999998 9998753
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.61 E-value=2.3 Score=41.57 Aligned_cols=130 Identities=15% Similarity=0.095 Sum_probs=75.0
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHH
Q psy3014 257 AYKKKNFEEALAHYNKAVEFDPTD-ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWK 335 (570)
Q Consensus 257 ~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (570)
....++++++.+..... ++-|.- ......++..+.+.|.++.|+...+ + +...+. +..+.|+.+
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~-----D------~~~rFe---LAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT-----D------PDHRFE---LALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------------HHHHHH---HHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC-----C------hHHHhH---HHHhcCCHH
Confidence 34578888877777522 222222 3445666777777888877776431 2 233333 346678887
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Q psy3014 336 NAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYY 415 (570)
Q Consensus 336 ~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 415 (570)
.|.+.. ...+++..|..+|...+.+|+++-|..+|.++-. +
T Consensus 336 ~A~~~a-------------------------------~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~ 376 (443)
T PF04053_consen 336 IALEIA-------------------------------KELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------F 376 (443)
T ss_dssp HHHHHC-------------------------------CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------H
T ss_pred HHHHHH-------------------------------HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------c
Confidence 777664 3334677899999999999999999999988632 3
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 416 SNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 416 ~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
..+..+|.-.|+.+.=.+..+.+..
T Consensus 377 ~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 377 SGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cccHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455566667776555555544443
No 346
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.59 E-value=0.073 Score=47.07 Aligned_cols=79 Identities=11% Similarity=0.129 Sum_probs=70.5
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSN-RAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR 451 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 451 (570)
..|.++..|...+....+.|-|.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...|.+++..+|+++..|+.
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 678889999998888888999999999999999999999999877 5556778899999999999999999999988765
No 347
>KOG1839|consensus
Probab=94.57 E-value=0.79 Score=49.32 Aligned_cols=179 Identities=15% Similarity=0.094 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHH------HHH-HHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-----cc
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALA------HYN-KAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN-----RA 312 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~------~~~-~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~~ 312 (570)
..+.-....|......|.+.+|.+ .+. ..-.+.|.....+..++.++...+++++|+..-.++.-+ .-
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 345555667777888888888887 444 223457888999999999999999999999998887632 12
Q ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC
Q psy3014 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNG 392 (570)
Q Consensus 313 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (570)
+.+.....+.+++...+..++...|...+.++.....-. .-...|.......+++.++...+
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls------------------~ge~hP~~a~~~~nle~l~~~v~ 1071 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS------------------SGEDHPPTALSFINLELLLLGVE 1071 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc------------------cCCCCCchhhhhhHHHHHHhhHH
Confidence 333347788888888888888888888888776521100 00046667777788899999999
Q ss_pred CHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Q psy3014 393 KYADAVKEYTEAINRNPD--------DPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441 (570)
Q Consensus 393 ~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 441 (570)
+++.|+.+.+.|+..+.. ....+..++.++...+++..|+...+....+
T Consensus 1072 e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1072 EADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 999999999999885321 3445666777777777777777666655443
No 348
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.36 E-value=0.68 Score=31.90 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH---HHHHHHhcCHHHHHHHHHHHh
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNI---AAVYFERKEYDQCIEQYIQKI 308 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~~~~~~A~~~~~~~l 308 (570)
.+......|.-++..++.++|+..++++++..++.+.-+..+ ..+|...|+|.+.+.+--+-+
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777788888888888888888777766554444 445677777777776654433
No 349
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.33 E-value=0.18 Score=28.90 Aligned_cols=32 Identities=16% Similarity=-0.004 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHH--HHHHHhhCCC
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDA--YEKALELDAS 478 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~--~~~al~~~p~ 478 (570)
+.++.+|..+..+|++++|+.. |.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3455666666666666666666 3355555554
No 350
>KOG0546|consensus
Probab=94.32 E-value=0.13 Score=46.64 Aligned_cols=116 Identities=20% Similarity=0.287 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------C--------CcchhhchhHHHhcccCHHHHHHHHhc
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDG-----------T--------NHILFSNRSAAFAKEGNYEKALEDAEK 70 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----------~--------~~~~~~~la~~~~~~g~~~~A~~~~~~ 70 (570)
..+.....|...+..++|+.|..-|.+++..-. + -...+.+++.+-+..+.+..|+.....
T Consensus 221 ~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~ 300 (372)
T KOG0546|consen 221 REEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNE 300 (372)
T ss_pred hhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccc
Confidence 345556678889999999999999988876421 1 123456788899999999999999999
Q ss_pred hhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 71 TISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 71 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
++..+++...+++.++..+..+.++++|++.++.+....|++..+...+......
T Consensus 301 ~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 301 ALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred ccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 9999999999999999999999999999999999999999998877766655443
No 351
>KOG3807|consensus
Probab=94.26 E-value=4.1 Score=36.92 Aligned_cols=197 Identities=14% Similarity=0.067 Sum_probs=102.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKK 330 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 330 (570)
+.+-+...+..+..+-++.-..+++++|....++..++.- ..--..+|.+.++++++.... .++.......
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~-------~yr~sqq~qh 258 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGET-------IYRQSQQCQH 258 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHH-------HHhhHHHHhh
Confidence 3455566677888888888899999999988888777643 233456777777777754222 1222222222
Q ss_pred cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q psy3014 331 MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD 410 (570)
Q Consensus 331 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 410 (570)
.|...+|.. .. ...-...+...++.+..++|+..+|++.++...+..|-
T Consensus 259 ~~~~~da~~------rR-------------------------Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl 307 (556)
T KOG3807|consen 259 QSPQHEAQL------RR-------------------------DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL 307 (556)
T ss_pred hccchhhhh------hc-------------------------ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH
Confidence 222111110 00 00011223345677777788888888887777766652
Q ss_pred C--HHHHHHHHHHHHHhcChHHHHHHHHHHHhc-CCCCHHHHHHHHH-------------HHHhCC---CHHHHHHHHHH
Q psy3014 411 D--PKYYSNRAACYTKLAAFDLGLKDCETCLKL-DPKFLKGWIRKGK-------------ILQGMQ---QQSKAIDAYEK 471 (570)
Q Consensus 411 ~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~-------------~~~~~g---~~~~A~~~~~~ 471 (570)
. ..++-++-..+....-|......+-+.-++ -|.....-+.-+. .-.+.| --..|++...+
T Consensus 308 ~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihR 387 (556)
T KOG3807|consen 308 LTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHR 387 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHH
Confidence 2 123334444444443333332222222111 1222221111111 111112 12468888899
Q ss_pred HHhhCCCcHHHHHHHH
Q psy3014 472 ALELDASNAEAVEGYR 487 (570)
Q Consensus 472 al~~~p~~~~~~~~l~ 487 (570)
|++.+|.-+..+..+.
T Consensus 388 AvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 388 AVEFNPHVPKYLLEMK 403 (556)
T ss_pred HhhcCCCCcHHHHHHH
Confidence 9999998877765443
No 352
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=3.8 Score=36.30 Aligned_cols=98 Identities=20% Similarity=0.124 Sum_probs=70.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-----ccChhHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEF------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN-----RADFKLIAK 319 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~ 319 (570)
..+...+++.|.|.+|+......+.. .|+-..++..-..+|....+..++...+..+-.. .|.. ..+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpq-lqa~ 207 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQ-LQAQ 207 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHH-HHHH
Confidence 34678889999999999988877643 3455677888888999999988888887766532 3332 1122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccC
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHR 349 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 349 (570)
.-..-|.......+|..|..+|-.+++-+.
T Consensus 208 lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 208 LDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred HHHhccceeeccccchhHHHHHHHHHhccc
Confidence 223336666778899999999999988554
No 353
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.13 E-value=0.13 Score=30.67 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEF 276 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 276 (570)
.++.++|.++...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 44556666666666666666666666654
No 354
>KOG1463|consensus
Probab=94.04 E-value=4.7 Score=36.79 Aligned_cols=172 Identities=18% Similarity=0.084 Sum_probs=113.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhc----C--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-----ccChhHHHHH
Q psy3014 252 ELGNEAYKKKNFEEALAHYNKAVEF----D--PTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN-----RADFKLIAKA 320 (570)
Q Consensus 252 ~la~~~~~~~~~~~A~~~~~~al~~----~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~~ 320 (570)
.+...|+..++|.+|+......+.. + +.-.+++..-..+|+...+..+|...+..+-.. .|.. ..+..
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPq-lQa~l 211 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQ-LQATL 211 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHH-HHHHH
Confidence 4788899999999999988777653 2 223566677788899999999998888777532 2221 11233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHH--HH
Q psy3014 321 LQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYAD--AV 398 (570)
Q Consensus 321 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--A~ 398 (570)
=..-|.++....+|..|..+|-.+.+-+...+ .++.-...+..+-.+-...+..++ ++
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~--------------------~~v~A~~sLKYMlLcKIMln~~ddv~~l 271 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLD--------------------DDVKALTSLKYMLLCKIMLNLPDDVAAL 271 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccC--------------------CcHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 33446677777899999999999988544321 122223333333333444455554 33
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH--hcChHHHHHHHHHHHhcCCC
Q psy3014 399 KEYTEAINRNPDDPKYYSNRAACYTK--LAAFDLGLKDCETCLKLDPK 444 (570)
Q Consensus 399 ~~~~~al~~~p~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~ 444 (570)
-.-..+++....+..+....|.++.. +.+|+.|+..|..-+..+|-
T Consensus 272 ls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 272 LSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 33455666677778888888887754 56788999999888877663
No 355
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.02 E-value=0.38 Score=44.68 Aligned_cols=90 Identities=19% Similarity=0.358 Sum_probs=72.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC--------C-----C-----HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH
Q psy3014 385 GNELFKNGKYADAVKEYTEAINRNP--------D-----D-----PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL 446 (570)
Q Consensus 385 ~~~~~~~~~~~~A~~~~~~al~~~p--------~-----~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 446 (570)
|..++++++|..|.--|..++++.. . + ..+--.+..||.++++.+.|+...-+.+.++|.+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 5566777777777777777776521 1 1 12345688999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
.-+...|.|+..+.+|.+|-..+.-+.-
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887766643
No 356
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.90 E-value=0.67 Score=40.88 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChh
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFK 315 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 315 (570)
-.....++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.++..++..|+.+
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 3444455556677788888888888888888888888888888888888888888888888888888873
No 357
>KOG0529|consensus
Probab=93.90 E-value=2.6 Score=39.50 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC----CCHHHHH
Q psy3014 393 KYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAA--FDLGLKDCETCLKLDPKFLKGWIRKGKILQGM----QQQSKAI 466 (570)
Q Consensus 393 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~~A~ 466 (570)
-.++-+.+...+++.+|+...+|+.+.+++.+.+. +..=+..++++++.+|.+..+|...-.+.... ....+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 45677788889999999999999999999998774 57889999999999999988886655444332 2356778
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 467 DAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 467 ~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
++..+++.-++.|-.+|..-..++..+-
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~ 197 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLH 197 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhc
Confidence 8899999999999999999888887543
No 358
>KOG1538|consensus
Probab=93.82 E-value=3.1 Score=41.30 Aligned_cols=206 Identities=16% Similarity=0.112 Sum_probs=109.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc--------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh------h
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEF--------------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKI------E 309 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~--------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l------~ 309 (570)
|..+|......=+++-|.+.|.++-.+ ...-|. -..+|.++...|++.+|.+.|.+.= +
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlE 666 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRSGHENRALE 666 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHcCchhhHHH
Confidence 455666666667777787777765432 111111 2456777778888888888886542 2
Q ss_pred cccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cc-CC--HHHHHHHHHHHHHHHHH----------HHHhc
Q psy3014 310 NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS----EH-RT--PEIRTLISEMEKKIKEE----------EKKAY 372 (570)
Q Consensus 310 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~--~~~~~~~~~~~~a~~~~----------~~~~~ 372 (570)
+..+- -.+..+.-+...|..++-....++--+ .. |. ++.+...|+.++|+... +-...
T Consensus 667 myTDl-----RMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rk 741 (1081)
T KOG1538|consen 667 MYTDL-----RMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARK 741 (1081)
T ss_pred HHHHH-----HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhh
Confidence 22211 122333444444443333332222111 00 11 23333344455544432 11222
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
++...-+.+...+..+.+...+.-|.+.|.+.-.. -.+...+...++|++|....++.-+.-| ..++-.
T Consensus 742 ld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~~~---dVy~py 810 (1081)
T KOG1538|consen 742 LDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEFKD---DVYMPY 810 (1081)
T ss_pred cchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCccccc---cccchH
Confidence 34444455555566666666666666666654221 2345566777888888777666433333 456667
Q ss_pred HHHHHhCCCHHHHHHHHHHH
Q psy3014 453 GKILQGMQQQSKAIDAYEKA 472 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~a 472 (570)
|+.+....+|++|.+.|-+|
T Consensus 811 aqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 811 AQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HHHhhhhhhHHHHHHHHHHh
Confidence 77777777777777777665
No 359
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.78 E-value=0.21 Score=28.64 Aligned_cols=32 Identities=25% Similarity=0.184 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHccCCC
Q psy3014 12 SLLKDKGNAALQANNFIEAIEA--YSEAIKLDGT 43 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~--~~~al~~~p~ 43 (570)
+.++..|..+..+|+|++|+.. |.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 5677778888888888888888 4466666654
No 360
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.68 E-value=1.1 Score=40.13 Aligned_cols=65 Identities=17% Similarity=0.203 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 309 (570)
....++..++..+...|+++.+++.+++.+..+|.+...|..+-..|...|+...|+..|++.-+
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 44667778899999999999999999999999999999999999999999999999999988764
No 361
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.64 E-value=0.62 Score=34.18 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=40.4
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhccc
Q psy3014 257 AYKKKNFEEALAHYNKAVEFDPTD---------ITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312 (570)
Q Consensus 257 ~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 312 (570)
..+.|+|.+|++.+.+........ ..+...+|.++...|++++|+..+++++++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 456788888887777777653221 34567788888888888888888888886543
No 362
>KOG0546|consensus
Probab=93.64 E-value=0.15 Score=46.28 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=91.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC-------------------CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC
Q psy3014 384 RGNELFKNGKYADAVKEYTEAINRNP-------------------DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444 (570)
Q Consensus 384 ~~~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 444 (570)
.|...++.++++.|..-+.+++..-. .-...+.+++.+-...+.+..|+.....++..+++
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s 307 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERS 307 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChh
Confidence 35556777777777777776654311 11235667888999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 445 FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
...+++..+..+....++++|++.++.+....|++..+...+..+.....+
T Consensus 308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999998888877666655
No 363
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.59 E-value=0.14 Score=29.69 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
+++..+|.+-...++|++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 456777888888888888888888887753
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.52 E-value=0.73 Score=31.76 Aligned_cols=62 Identities=8% Similarity=0.136 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 285 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
...|.-++..++.++|+..++++++..++.+....++..+..+|...|++.+.+.+--.-+.
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567888999999999999999888866677778888899999999998887655444
No 365
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.34 E-value=4 Score=34.46 Aligned_cols=78 Identities=12% Similarity=0.031 Sum_probs=56.0
Q ss_pred HHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHhCCCHH
Q psy3014 389 FKNGKYADAVKEYTEAINRN-PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK----FLKGWIRKGKILQGMQQQS 463 (570)
Q Consensus 389 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~ 463 (570)
..+..-++|...|-++-... -+++...+.+|..|. ..+.++|+..+-+++++.+. +++.+..++.++.++|+++
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34433467777766553321 146888888887766 56889999999999987543 4788888999999999988
Q ss_pred HHHH
Q psy3014 464 KAID 467 (570)
Q Consensus 464 ~A~~ 467 (570)
.|--
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 8753
No 366
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.25 E-value=0.13 Score=26.89 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=15.0
Q ss_pred hHHhHHHHHHhhccCHHHHHHHHH
Q psy3014 80 KGYSRKGSALSYLGRYKESISTYE 103 (570)
Q Consensus 80 ~~~~~la~~~~~~g~~~~A~~~~~ 103 (570)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345566666666666666666554
No 367
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.16 E-value=0.46 Score=34.84 Aligned_cols=55 Identities=11% Similarity=0.210 Sum_probs=39.8
Q ss_pred HHhcChHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 423 TKLAAFDLGLKDCETCLKLDPK---------FLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 423 ~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
.+.|+|..|++.+.+.+..... ...++.++|.++...|++++|+..++.++++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4567777776666666654221 235667788999999999999999999988753
No 368
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.15 E-value=0.14 Score=29.75 Aligned_cols=29 Identities=31% Similarity=0.560 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKL 40 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 40 (570)
+.+..+|.+-+..++|++|+.-|++++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667777777777777777777777765
No 369
>KOG2581|consensus
Probab=93.13 E-value=2.5 Score=39.39 Aligned_cols=211 Identities=11% Similarity=0.019 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CC--------CHHHHHHHHHHHHHhcCHHHHHHHHHHHhh---cccCh
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFD-PT--------DITFQNNIAAVYFERKEYDQCIEQYIQKIE---NRADF 314 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~---~~~~~ 314 (570)
+-.++.....++.+.++++|..+-+..+..- -. ....|+.+..+|...|+...-...+...+. +..+.
T Consensus 126 aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~ 205 (493)
T KOG2581|consen 126 AYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDE 205 (493)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcc
Confidence 3333444445566788999988887766431 11 145667777777778876665555555553 34455
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCH
Q psy3014 315 KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394 (570)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (570)
...+...+.+-..|...+.|+.|.....+..- |... .+...+...+.+|.+..-+++|
T Consensus 206 e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~--pe~~--------------------snne~ARY~yY~GrIkaiqldY 263 (493)
T KOG2581|consen 206 EGQAVLINLLLRNYLHNKLYDQADKLVSKSVY--PEAA--------------------SNNEWARYLYYLGRIKAIQLDY 263 (493)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC--cccc--------------------ccHHHHHHHHHHhhHHHhhcch
Confidence 55666667777788888888888777666543 1110 2334566778899999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHhCCCHHHHH
Q psy3014 395 ADAVKEYTEAINRNPDDPKY------YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKI--LQGMQQQSKAI 466 (570)
Q Consensus 395 ~~A~~~~~~al~~~p~~~~~------~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~g~~~~A~ 466 (570)
..|.++|-.|+...|.+... .-.+..+-.-+|++.+=.-..+..++ .....|+.+... .-...+|.+-+
T Consensus 264 ssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~---ksL~~Yf~Lt~AVr~gdlkkF~~~l 340 (493)
T KOG2581|consen 264 SSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMR---KSLRPYFKLTQAVRLGDLKKFNETL 340 (493)
T ss_pred hHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHH---HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999974332 22223333344555443222221111 123344544443 23344566777
Q ss_pred HHHHHHHhhCCCcHHH
Q psy3014 467 DAYEKALELDASNAEA 482 (570)
Q Consensus 467 ~~~~~al~~~p~~~~~ 482 (570)
+-|..-+..+....-+
T Consensus 341 eq~k~~f~~D~ty~Li 356 (493)
T KOG2581|consen 341 EQFKDKFQADGTYTLI 356 (493)
T ss_pred HHHHHHHhhCCcchHH
Confidence 7777777766654433
No 370
>KOG3807|consensus
Probab=92.75 E-value=7.5 Score=35.31 Aligned_cols=53 Identities=11% Similarity=0.138 Sum_probs=33.8
Q ss_pred HHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhcc
Q psy3014 54 AFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKL 108 (570)
Q Consensus 54 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 108 (570)
...+..+..+-++....+++++|.+..++..+|.-- .--..+|.+.++++++.
T Consensus 193 ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHH
Confidence 334455566667777777777777777777776532 22355677777776654
No 371
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.69 E-value=0.18 Score=26.38 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Q psy3014 448 GWIRKGKILQGMQQQSKAIDAYE 470 (570)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~ 470 (570)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555555443
No 372
>KOG4151|consensus
Probab=92.50 E-value=0.47 Score=48.02 Aligned_cols=119 Identities=23% Similarity=0.352 Sum_probs=98.8
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----cchhhchhHHHh--cccCHHHHHHHHhchhccCCCChh
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN----HILFSNRSAAFA--KEGNYEKALEDAEKTISLKPDWPK 80 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~ 80 (570)
.-..+..+...|+..++.++|..|.--|..++.+-|.+ ...+.+.+.|++ ..|+|.+++..+.-++...|....
T Consensus 49 ~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~ 128 (748)
T KOG4151|consen 49 FLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISK 128 (748)
T ss_pred HHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHH
Confidence 34456677888999999999999999999999888853 445566777765 467999999999999999999999
Q ss_pred HHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 81 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
+++.++.+|...++++-|++...-....+|.+..+...+..+...
T Consensus 129 ~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~l 173 (748)
T KOG4151|consen 129 ALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGL 173 (748)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence 999999999999999999999988899999997666544444433
No 373
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=92.23 E-value=9 Score=35.00 Aligned_cols=97 Identities=19% Similarity=0.176 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCCHHHHHHH
Q psy3014 391 NGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL--DPKFLKGWIRKGKILQGMQQQSKAIDA 468 (570)
Q Consensus 391 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (570)
.-+|..-...|.-.....| +|.+-.|.+....+..-...++...+..... -..+...+-..|.++.++|+.++|...
T Consensus 309 dtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~a 387 (415)
T COG4941 309 DTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAA 387 (415)
T ss_pred CCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHH
Confidence 3467777777776666666 5667777888777777778888777766554 233445667799999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHH
Q psy3014 469 YEKALELDASNAEAVEGYRQ 488 (570)
Q Consensus 469 ~~~al~~~p~~~~~~~~l~~ 488 (570)
|++++.+.++..+.......
T Consensus 388 ydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 388 YDRAIALARNAAERAFLRQR 407 (415)
T ss_pred HHHHHHhcCChHHHHHHHHH
Confidence 99999999988776654443
No 374
>KOG2581|consensus
Probab=92.22 E-value=10 Score=35.63 Aligned_cols=139 Identities=11% Similarity=0.060 Sum_probs=89.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhhc-cc-----ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHH
Q psy3014 287 IAAVYFERKEYDQCIEQYIQKIEN-RA-----DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360 (570)
Q Consensus 287 la~~~~~~~~~~~A~~~~~~~l~~-~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 360 (570)
....++..+++.+|..+-...+.. .- -+-..+..|+.+..+|...|+...-...+...+....-..
T Consensus 132 v~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh-------- 203 (493)
T KOG2581|consen 132 VLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH-------- 203 (493)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC--------
Confidence 333455567777777776665521 11 1123367788888888888887666666655444322210
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC--CCHHHHHHHHHHHHHhcChHHHHHHHH
Q psy3014 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR--NP--DDPKYYSNRAACYTKLAAFDLGLKDCE 436 (570)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p--~~~~~~~~la~~~~~~~~~~~A~~~~~ 436 (570)
.....+.....+-..|...+.|+.|.....+..-- .. ..+..++.+|.+..-+++|..|.+++-
T Consensus 204 ------------d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~ 271 (493)
T KOG2581|consen 204 ------------DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFL 271 (493)
T ss_pred ------------cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHH
Confidence 12233445566777888888888888888877522 11 224567778888888888999999998
Q ss_pred HHHhcCCCC
Q psy3014 437 TCLKLDPKF 445 (570)
Q Consensus 437 ~al~~~p~~ 445 (570)
+|+...|.+
T Consensus 272 qa~rkapq~ 280 (493)
T KOG2581|consen 272 QALRKAPQH 280 (493)
T ss_pred HHHHhCcch
Confidence 888888874
No 375
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.93 E-value=21 Score=38.63 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHH
Q psy3014 262 NFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLI 317 (570)
Q Consensus 262 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 317 (570)
.+++|+..|++.. ..|.-|--|...|.+|.++|++++-++++.-+++..|.++.+
T Consensus 534 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 534 DFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 4666666666643 345556666677777777777777777777777777766443
No 376
>KOG0686|consensus
Probab=91.92 E-value=9.3 Score=35.92 Aligned_cols=178 Identities=15% Similarity=0.116 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC-------C-CCH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPD---DPKYYSNRAACYTKLAAFDLGLKDCETCLKLD-------P-KFL 446 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p-~~~ 446 (570)
-.++..+|..|...|+++.|+++|.++-....+ ....+.++-.+-..+|+|..-..+-.++...- + -.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 456777899999999999999999997655443 24567777788888899988777777776541 0 012
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh--------hCCCcHHHHHHHHHHHHHhcC--------CHHHHHHHHcCCchH
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALE--------LDASNAEAVEGYRQCSIAVSS--------NPEEVRKRAMGDPEV 510 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~~~~~~~--------~~e~~~~~~~~~p~~ 510 (570)
.....-|.+...+++|..|..+|-.+.. +.|.+..++.+|..+ .-.++ ..+........+|.+
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcAL-Atfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCAL-ATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhh-ccCCHHHHHHHHHcchhhhhHHhcChHH
Confidence 3445566677777799999998877643 235666665554432 22222 112333444556777
Q ss_pred HHhhc---CHHHHHHHHHhhc-CHHHHHHhhcCHHHHHHHHHHHhcCchh
Q psy3014 511 QQILR---DPAMRLILEQMQN-DPRALSDHLKNPEIASKIQKLVNSGLIV 556 (570)
Q Consensus 511 ~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (570)
.+++. ...+...++-+++ .|..+...+=.|.|...++++..-+++.
T Consensus 309 r~il~~fy~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~r~llq 358 (466)
T KOG0686|consen 309 REILFKFYSSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRNRALLQ 358 (466)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhccceeechhcchhHHHHHHHHHHhhHHH
Confidence 65543 3344555555543 3443334444566666666666655443
No 377
>KOG1538|consensus
Probab=91.75 E-value=15 Score=36.94 Aligned_cols=58 Identities=10% Similarity=0.182 Sum_probs=33.8
Q ss_pred hhchhHHHhcccCHHHHHHHHhchhccC-------------CCChhHHhHHHHHHhhccCHHHHHHHHHHh
Q psy3014 48 FSNRSAAFAKEGNYEKALEDAEKTISLK-------------PDWPKGYSRKGSALSYLGRYKESISTYEEG 105 (570)
Q Consensus 48 ~~~la~~~~~~g~~~~A~~~~~~al~~~-------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 105 (570)
|-.+|.-.+..=+++-|.+.|.++-.+. .....--..+|.++...|++.+|.+.|.+.
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHc
Confidence 4455555555555666666665543220 011112355788888888888888888653
No 378
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.50 E-value=1.3 Score=39.69 Aligned_cols=63 Identities=22% Similarity=0.175 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 412 PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 412 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
..++..++..+...|+++.++..+++.+..+|-+...|..+-..|...|+...|+..|++.-+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 446666777777777777777777777777777777777777777777777777777776655
No 379
>KOG2422|consensus
Probab=91.35 E-value=16 Score=36.14 Aligned_cols=165 Identities=13% Similarity=0.154 Sum_probs=110.5
Q ss_pred hcCHHHHHHHHHHHhhcccCh---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Q psy3014 294 RKEYDQCIEQYIQKIENRADF---------KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKI 364 (570)
Q Consensus 294 ~~~~~~A~~~~~~~l~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~ 364 (570)
...|++|...|.-+....+.+ +.-...+..++.+...+|+.+-|....++++=.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~----------------- 313 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYV----------------- 313 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHH-----------------
Confidence 345778888887776443221 223788999999999999999998888887641
Q ss_pred HHHHHHhc--------------CChhhHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH-Hh
Q psy3014 365 KEEEKKAY--------------IDPVKAE---EAKERGNELFKNGKYADAVKEYTEAINRNPD-DPKYYSNRAACYT-KL 425 (570)
Q Consensus 365 ~~~~~~~~--------------~~~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~-~~ 425 (570)
++++.. ..|.+-. +++..-..+.+.|-+..|.++++-.++++|. +|.+...+-.+|. +.
T Consensus 314 --~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALra 391 (665)
T KOG2422|consen 314 --FDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRA 391 (665)
T ss_pred --HHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHH
Confidence 111111 2333333 3334455667899999999999999999998 7766555555443 44
Q ss_pred cChHHHHHHHHHH-----HhcCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhhCCC
Q psy3014 426 AAFDLGLKDCETC-----LKLDPKFLKGWIRKGKILQGMQQ---QSKAIDAYEKALELDAS 478 (570)
Q Consensus 426 ~~~~~A~~~~~~a-----l~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~ 478 (570)
.+|.=-+..++.. +..-|+.+. -..+|..|..... .+.|...+.+|+.+.|.
T Consensus 392 reYqwiI~~~~~~e~~n~l~~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 392 REYQWIIELSNEPENMNKLSQLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HhHHHHHHHHHHHHhhccHhhcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 5555555555544 344565442 2356777766665 78899999999999985
No 380
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=91.33 E-value=0.89 Score=41.66 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy3014 431 GLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIA 492 (570)
Q Consensus 431 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 492 (570)
|..+|.+|+.+.|++...+..+|.++...|+.-.|+-+|-+++-..--.+.+..+|.....+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555554333334455555555444
No 381
>KOG0128|consensus
Probab=91.28 E-value=20 Score=37.16 Aligned_cols=77 Identities=10% Similarity=0.039 Sum_probs=55.2
Q ss_pred CcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHH
Q psy3014 44 NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIK 120 (570)
Q Consensus 44 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 120 (570)
+.++.+..+.=-...+.-+.=+..++.-+.+++.+...+..|-.++...|+.++-...-..+..+.|.++..|....
T Consensus 78 sSe~~~ds~sD~s~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl 154 (881)
T KOG0128|consen 78 SSEVSMDSDSDSSNEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWL 154 (881)
T ss_pred cCcccccccCCccccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 33444444333344445556667777777888888888888999999999998888777788888888887776543
No 382
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.10 E-value=7.5 Score=38.10 Aligned_cols=132 Identities=14% Similarity=0.012 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
.....++..+.+.|.++.|+.+.+ ++...+.+| .+.|+.+.|.+..++. ++ ...|..+|..
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLA---l~lg~L~~A~~~a~~~-----~~---~~~W~~Lg~~ 356 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVT--------DPDHRFELA---LQLGNLDIALEIAKEL-----DD---PEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHH---HHCT-HHHHHHHCCCC-----ST---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHH---HhcCCHHHHHHHHHhc-----Cc---HHHHHHHHHH
Confidence 345667778888898888876643 456555554 6789999988765332 34 6799999999
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q psy3014 328 YKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 407 (570)
....|+++-|..+|.++-. +..+..+|...|+.+.-.+....+...
T Consensus 357 AL~~g~~~lAe~c~~k~~d----------------------------------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD----------------------------------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT-----------------------------------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHhhcC----------------------------------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 9999999999999998865 344566667777765555555544433
Q ss_pred CCCCHHHHHHHHHHHHHhcChHHHHHHHHH
Q psy3014 408 NPDDPKYYSNRAACYTKLAAFDLGLKDCET 437 (570)
Q Consensus 408 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 437 (570)
... ...-.++..+|+.++.++.+.+
T Consensus 403 ~~~-----n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GDI-----NIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-H-----HHHHHHHHHHT-HHHHHHHHHH
T ss_pred cCH-----HHHHHHHHHcCCHHHHHHHHHH
Confidence 221 1122234445666665555443
No 383
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.01 E-value=2.5 Score=35.59 Aligned_cols=86 Identities=15% Similarity=0.251 Sum_probs=65.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh-hHHHHHHHHHHHHHHH
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFD-PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF-KLIAKALQRIGNCYKK 330 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~~l~~~~~~ 330 (570)
+...+...-.-+.|...|-++-... -++++..+.+|..|. ..+.++++..+.+++++.+.. ...++++..|+.++..
T Consensus 112 llYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 112 LLYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 3344445545577877777654332 256888899987776 778999999999999876544 4558999999999999
Q ss_pred cCCHHHHHH
Q psy3014 331 MEDWKNAKV 339 (570)
Q Consensus 331 ~~~~~~A~~ 339 (570)
.|+++.|.-
T Consensus 191 ~~~~e~AYi 199 (203)
T PF11207_consen 191 LKNYEQAYI 199 (203)
T ss_pred hcchhhhhh
Confidence 999998853
No 384
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=90.67 E-value=18 Score=35.42 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC--C---CHHHHHHHHHHH--HHhcChHHHHHHHHHHHhcCCCCHH
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINR--NP--D---DPKYYSNRAACY--TKLAAFDLGLKDCETCLKLDPKFLK 447 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p--~---~~~~~~~la~~~--~~~~~~~~A~~~~~~al~~~p~~~~ 447 (570)
...+....+.++...|.+.+|...+-+.... .. . .+.++-..|.|+ ........-..-++ ....
T Consensus 299 a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~R-------K~af 371 (414)
T PF12739_consen 299 ALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFR-------KYAF 371 (414)
T ss_pred hHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhH-------HHHH
Confidence 3445666777788888888877776666554 22 2 333445555555 11100000000000 0122
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 448 GWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
-+..-|.-|.+.|+...|..+|.+|+....
T Consensus 372 ~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 372 HMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 233456788999999999999999998764
No 385
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=89.90 E-value=1 Score=24.71 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy3014 460 QQQSKAIDAYEKALELDASNAEAVEGYRQC 489 (570)
Q Consensus 460 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 489 (570)
|+.+.|...|++++...|.++.+|..+...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456677777777777777777777666544
No 386
>KOG0128|consensus
Probab=89.79 E-value=28 Score=36.27 Aligned_cols=97 Identities=14% Similarity=0.062 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHh---hccCHHHHHHH
Q psy3014 25 NNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALS---YLGRYKESIST 101 (570)
Q Consensus 25 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~ 101 (570)
+.-++=+..++.-+.+++.+...+..|-.++...|++++-...-.++..+.|.++..|.....-.. ..+...++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 334455667777788888888888999999999999998888777778888888877766554332 23667778888
Q ss_pred HHHhhccCCCcHHHHHHHHHH
Q psy3014 102 YEEGLKLDPNNEQMKEAIKDV 122 (570)
Q Consensus 102 ~~~al~~~p~~~~~~~~l~~~ 122 (570)
|++++.-. +....|...+..
T Consensus 173 ~ekal~dy-~~v~iw~e~~~y 192 (881)
T KOG0128|consen 173 FEKALGDY-NSVPIWEEVVNY 192 (881)
T ss_pred HHHHhccc-ccchHHHHHHHH
Confidence 88888533 344444443333
No 387
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.65 E-value=1.4 Score=39.16 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy3014 414 YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKA 472 (570)
Q Consensus 414 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 472 (570)
.+...+..|...|.+.+|+.+.++++.++|-+...+..+-.++..+|+--.|++.|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34455667777888888888888888888888888888888888888877777777654
No 388
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.02 E-value=24 Score=34.50 Aligned_cols=182 Identities=14% Similarity=0.053 Sum_probs=104.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHH
Q psy3014 277 DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTL 356 (570)
Q Consensus 277 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 356 (570)
.|-+-..+..+-.++....++.-....+.+.+....+ -.+++.++.+|... ..++-....++.++
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~----kmal~el~q~y~en-~n~~l~~lWer~ve---------- 126 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGES----KMALLELLQCYKEN-GNEQLYSLWERLVE---------- 126 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcch----HHHHHHHHHHHHhc-CchhhHHHHHHHHH----------
Confidence 3445555555666666666666667777888876655 57888899999887 44555666666666
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC--C---HHHHHHHHHHHHHhcChHH
Q psy3014 357 ISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN-PD--D---PKYYSNRAACYTKLAAFDL 430 (570)
Q Consensus 357 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~--~---~~~~~~la~~~~~~~~~~~ 430 (570)
.+-++...-..++..|.+ ++-+++..+|.+++... |. + .++|-.+-.. --.+.+.
T Consensus 127 ----------------~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~ 187 (711)
T COG1747 127 ----------------YDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDF 187 (711)
T ss_pred ----------------hcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHH
Confidence 555555556666666655 77788888888877542 21 1 1222222110 0112222
Q ss_pred HHHHHHHHHhcCC-CCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy3014 431 GLKDCETCLKLDP-KFLKGWIR-KGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIA 492 (570)
Q Consensus 431 A~~~~~~al~~~p-~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 492 (570)
-+....+.-.... ......+. .-.-|....++.+|+..+...++++..+..++.++...++.
T Consensus 188 fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 188 FLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 2222222221111 11112221 22334556678888888888888888877777776666555
No 389
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.93 E-value=3.9 Score=34.76 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=62.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 254 GNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 254 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
...+.+.+...+|+...+.-++..|.+......+-.++.-.|+|++|...++-+-++.|++......|..+-.+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999886555555555444
No 390
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.90 E-value=1.8 Score=26.22 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHh
Q psy3014 286 NIAAVYFERKEYDQCIEQYIQKI 308 (570)
Q Consensus 286 ~la~~~~~~~~~~~A~~~~~~~l 308 (570)
.+|..|..+|+++.|.+.++.++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 34445555555555555555544
No 391
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.77 E-value=1.6 Score=39.97 Aligned_cols=62 Identities=16% Similarity=0.064 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy3014 397 AVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG 458 (570)
Q Consensus 397 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 458 (570)
|..+|.+|+.+.|++...|+.+|.++...|+.-.|+-+|-+++....-.+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45666777777777777777777777777777677766666665544445566666666655
No 392
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=88.57 E-value=18 Score=32.58 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=21.9
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
.-.++..+..+|..+++.|++.+|..+|-
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 33578899999999999999998887774
No 393
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.54 E-value=2.7 Score=25.44 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
+.+|..|..+|+.+.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456666666666666666666663
No 394
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=88.30 E-value=25 Score=33.84 Aligned_cols=63 Identities=10% Similarity=0.143 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH--HHHHH--HHHHHHhcCHHHHHHHHHHHhhc
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDIT--FQNNI--AAVYFERKEYDQCIEQYIQKIEN 310 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l--a~~~~~~~~~~~A~~~~~~~l~~ 310 (570)
......+..+++.++|..|...+......-|.+.. .+..+ |.-+...-++.+|.+.++..+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45566777888999999999999998885333333 33333 44456677888888888887654
No 395
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=88.18 E-value=1.4 Score=24.16 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=23.0
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy3014 261 KNFEEALAHYNKAVEFDPTDITFQNNIAAV 290 (570)
Q Consensus 261 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 290 (570)
|+++.|...|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 457788888888888888888888766544
No 396
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=87.74 E-value=13 Score=29.72 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=36.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q psy3014 254 GNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYI 305 (570)
Q Consensus 254 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 305 (570)
-..+...+.+...+.+++.++..++.++..+..+..+|... +..+.++.++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 33445567888899999998888887788888888887654 3444555554
No 397
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.35 E-value=4 Score=36.40 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQK 307 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 307 (570)
.+...+..|...|.+.+|+++.++++..+|-+...+..+-.++..+|+--.+++.|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33444556666777777777777777777777777777767777777666666655543
No 398
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=87.19 E-value=28 Score=34.07 Aligned_cols=43 Identities=19% Similarity=0.092 Sum_probs=30.8
Q ss_pred HhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 82 YSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 82 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
.-.+|.+++.+|+|+-|...|+.+.+-.. +..+|..++.+...
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~-~Dkaw~~~A~~~Em 253 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFK-NDKAWKYLAGAQEM 253 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHh-hchhHHHHHhHHHH
Confidence 44589999999999999999998776433 34455555554433
No 399
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=87.13 E-value=1.1 Score=35.54 Aligned_cols=49 Identities=20% Similarity=0.207 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhccc
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEG 59 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 59 (570)
++.+...+...+..|+|.-|..+.+.++..+|++..+...++.++.++|
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666666666666666555544
No 400
>KOG2114|consensus
Probab=86.74 E-value=44 Score=34.98 Aligned_cols=106 Identities=11% Similarity=0.100 Sum_probs=58.5
Q ss_pred HHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHH---HHHHHHHH
Q psy3014 289 AVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLI---SEMEKKIK 365 (570)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---~~~~~a~~ 365 (570)
.++.+..-|+-|+...+.- ..+++ ....++...|..++..|++++|...|-+.+..-..+.+.... .+..+-..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-~~d~d--~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~ 418 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-HLDED--TLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTS 418 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-CCCHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHH
Confidence 4456666677777655432 22222 246677777888888888888888888887766555443322 11222222
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
.++.+....-.+.+--..+-.+|.+.++.++-
T Consensus 419 YLe~L~~~gla~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 419 YLEALHKKGLANSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHHHHHHcccccchhHHHHHHHHHHhcchHHH
Confidence 33333333333333334455666666655443
No 401
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=86.36 E-value=25 Score=33.81 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHhc
Q psy3014 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI--GNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 285 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
...+.-.+..++|..|...+..+...-|.... ...+..+ |..+...-++.+|...+++.+.
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455566666666666666666654222211 1222222 2233344555555555555443
No 402
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=86.26 E-value=3.8 Score=32.57 Aligned_cols=50 Identities=10% Similarity=0.010 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 446 LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
.+.....+.-.+..|++.-|.+....++..+|+|..++...+.++.+++.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 45566677777888899999999999999999999999999999888886
No 403
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=86.21 E-value=23 Score=31.32 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHh-----cCCCCHH---HHHHHHHHH-HhCCCHHHHHHHHHHHHh
Q psy3014 429 DLGLKDCETCLK-----LDPKFLK---GWIRKGKIL-QGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 429 ~~A~~~~~~al~-----~~p~~~~---~~~~l~~~~-~~~g~~~~A~~~~~~al~ 474 (570)
+.|...|++|+. +.|.+|. ...+.+..| .-+|+.++|+...++|+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 455555555543 3566553 223344444 557888888887777764
No 404
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.08 E-value=47 Score=34.66 Aligned_cols=25 Identities=4% Similarity=-0.136 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSE 36 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~ 36 (570)
...+..+...+..|++..+...-.+
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~ 58 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPT 58 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 5678889999999999887666554
No 405
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.66 E-value=17 Score=31.14 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=47.9
Q ss_pred HHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHH
Q psy3014 53 AAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114 (570)
Q Consensus 53 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (570)
..+++.+..++|+...+.-++.+|.+......+-.++.-.|+|++|...++-+-.+.|+...
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34566777788888888888888888888877888888888888888888888888777643
No 406
>KOG0686|consensus
Probab=84.94 E-value=25 Score=33.28 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHH
Q psy3014 282 TFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEME 361 (570)
Q Consensus 282 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 361 (570)
.++..+|.-|...|+.+.|++.|-++-....+...+...+.++-.+-...|+|..-..+..++.+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~----------- 219 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDA----------- 219 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh-----------
Confidence 567889999999999999999999988777777667888899999999999999999988888764200
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q psy3014 362 KKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAI 405 (570)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 405 (570)
.......-| +......|.+.+..++|..|..+|-.+.
T Consensus 220 -----~~~~~q~v~--~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 220 -----NENLAQEVP--AKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred -----hhhHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 000000111 2244555666777778999888887664
No 407
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.34 E-value=29 Score=30.99 Aligned_cols=127 Identities=10% Similarity=0.007 Sum_probs=89.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHhcChHHHHHHHHH
Q psy3014 366 EEEKKAYIDPVKAEEAKERGNELFKN--GKYADAVKEYTEAINRNPDDPKYYSNRAACY------TKLAAFDLGLKDCET 437 (570)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~~~~~~A~~~~~~ 437 (570)
.+..+...+|.+..+|...-.++-.. .++..-....++.++.++.+..+|..+-.+. .....+..-.++-..
T Consensus 96 ~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~ 175 (328)
T COG5536 96 FLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTS 175 (328)
T ss_pred HHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHH
Confidence 34444448888888888777776554 6678888888999999999887776655544 223334444566667
Q ss_pred HHhcCCCCHHHHHHH---HHHHHhCCC------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy3014 438 CLKLDPKFLKGWIRK---GKILQGMQQ------QSKAIDAYEKALELDASNAEAVEGYRQCSIA 492 (570)
Q Consensus 438 al~~~p~~~~~~~~l---~~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 492 (570)
++..++.+..+|... -...+..|+ +++-+++.-.++-.+|++..+|..+..+...
T Consensus 176 ~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~ 239 (328)
T COG5536 176 LIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSE 239 (328)
T ss_pred HHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhcc
Confidence 788899998888775 333344554 4566777777888899999999888777665
No 408
>KOG1920|consensus
Probab=83.28 E-value=64 Score=35.38 Aligned_cols=113 Identities=11% Similarity=0.068 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHH
Q psy3014 319 KALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAV 398 (570)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 398 (570)
.++...|..+...+.+++|.-.|+++=+....-..+...+++.+++....+...........-..++..+..++++-+|-
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa 1019 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAA 1019 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHH
Confidence 33444444444455555555555444333222223333344555555444432221122222255666777778877777
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHH
Q psy3014 399 KEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETC 438 (570)
Q Consensus 399 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 438 (570)
+...+.+. +|..+.. .+.+...|++|+.....+
T Consensus 1020 ~il~e~~s-d~~~av~------ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1020 KILLEYLS-DPEEAVA------LLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHhc-CHHHHHH------HHhhHhHHHHHHHHHHhc
Confidence 77666543 2222222 233334556665554443
No 409
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=83.25 E-value=2.7 Score=28.91 Aligned_cols=31 Identities=23% Similarity=0.145 Sum_probs=24.2
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIK 39 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 39 (570)
.++..+...|..+-..|++.+|+.+|+++++
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4567778888888888888888888777654
No 410
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=83.07 E-value=9.3 Score=36.59 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=60.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHH
Q psy3014 381 AKERGNELFKNGKYADAVKEYTEAINRN---------PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR 451 (570)
Q Consensus 381 ~~~~~~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 451 (570)
...+..++.-.|||..|++.++.. +++ +-+..+++.+|.+|..+++|.+|++.|..++-.-......+..
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~ 203 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQ 203 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 445677888999999999987653 221 2245688999999999999999999999887431111100000
Q ss_pred HHHHH-HhCCCHHHHHHHHHHHHhhCCC
Q psy3014 452 KGKIL-QGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 452 l~~~~-~~~g~~~~A~~~~~~al~~~p~ 478 (570)
...-+ .-.+..++....+--++.+.|.
T Consensus 204 ~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 204 RSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred ccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 00011 1123445555556666666775
No 411
>KOG0276|consensus
Probab=82.65 E-value=18 Score=36.04 Aligned_cols=31 Identities=13% Similarity=0.167 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q psy3014 376 VKAEEAKERGNELFKNGKYADAVKEYTEAIN 406 (570)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 406 (570)
++..-|..+|.+....+++..|.++|.++-.
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3455678888888888888888888887743
No 412
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=82.63 E-value=11 Score=25.95 Aligned_cols=31 Identities=35% Similarity=0.396 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVE 275 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 275 (570)
..+..+...|.-+-..|++++|+.+|+++++
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4566677778888888888888888877664
No 413
>KOG4151|consensus
Probab=82.51 E-value=5.2 Score=40.92 Aligned_cols=101 Identities=27% Similarity=0.504 Sum_probs=66.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHH--hcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy3014 384 RGNELFKNGKYADAVKEYTEAINRNPD----DPKYYSNRAACYTK--LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQ 457 (570)
Q Consensus 384 ~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 457 (570)
-|..++..+++..|.--|..++.+-|. ......+.+.|+.. .|+|..++....-++...|....++...+.+|.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE 138 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence 355566666777776666666666553 23344555555554 456777777777777777777777777777777
Q ss_pred hCCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy3014 458 GMQQQSKAIDAYEKALELDASNAEAVE 484 (570)
Q Consensus 458 ~~g~~~~A~~~~~~al~~~p~~~~~~~ 484 (570)
..+.++-|++...-.....|++..+..
T Consensus 139 al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 139 ALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 777777777777667777777755554
No 414
>PF12854 PPR_1: PPR repeat
Probab=82.24 E-value=3.8 Score=23.03 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHH
Q psy3014 412 PKYYSNRAACYTKLAAFDLGLKDCE 436 (570)
Q Consensus 412 ~~~~~~la~~~~~~~~~~~A~~~~~ 436 (570)
...|..+-..|.+.|+.++|.+.|+
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344444555555555555555444
No 415
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=82.20 E-value=22 Score=31.81 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcChHHHHHHHHHH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPD------DPKYYSNRAACYTKLAAFDLGLKDCETC 438 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~a 438 (570)
......+|..|+..|++++|+.+|+.+...... ...++..+..|+...|+.+..+...-+.
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344556788888888888888888887554322 1345666777777777777766655443
No 416
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.06 E-value=2.3 Score=40.51 Aligned_cols=59 Identities=25% Similarity=0.272 Sum_probs=47.3
Q ss_pred hhchhHHHhcccCHHHHHHHHhchhccC---------CCChhHHhHHHHHHhhccCHHHHHHHHHHhhc
Q psy3014 48 FSNRSAAFAKEGNYEKALEDAEKTISLK---------PDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107 (570)
Q Consensus 48 ~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 107 (570)
..++.+++.-+|+|..|++.++.. .++ +-+...++..|-+|+.+++|.+|++.|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788899999999998763 222 23567789999999999999999999998764
No 417
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=81.26 E-value=20 Score=32.14 Aligned_cols=85 Identities=16% Similarity=0.175 Sum_probs=60.0
Q ss_pred cCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh---hHHHHHHHHHHHHHHHc
Q psy3014 261 KNFEEALAHYNKAVEFDPTD------ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF---KLIAKALQRIGNCYKKM 331 (570)
Q Consensus 261 ~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~~~l~~~~~~~ 331 (570)
..-...+.++++|+...... ..+...+|..|+..|++++|+.+|+.+....... .....++..+..|+...
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 34445566666666554321 3455788999999999999999999997543322 34467788888999999
Q ss_pred CCHHHHHHHHHHHh
Q psy3014 332 EDWKNAKVYFEKSM 345 (570)
Q Consensus 332 ~~~~~A~~~~~~~~ 345 (570)
|+.+..+.+.-+.+
T Consensus 232 ~~~~~~l~~~leLl 245 (247)
T PF11817_consen 232 GDVEDYLTTSLELL 245 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99988877665443
No 418
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=80.69 E-value=40 Score=29.85 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHH-HhcCHHHHHHHHHHHh
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTD-ITFQNNIAAVYF-ERKEYDQCIEQYIQKI 308 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~-~~~~~~~A~~~~~~~l 308 (570)
-+..++.+....|+|++.+.+..+++..+|.- .+-...++.+|- ..|....+...+....
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 35678888999999999999999999987753 333444454443 2344445555544443
No 419
>PF12854 PPR_1: PPR repeat
Probab=80.58 E-value=3.1 Score=23.41 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSE 36 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~ 36 (570)
+.-.|..+-..+.+.|+.++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 344444455555555555555555543
No 420
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.51 E-value=20 Score=31.99 Aligned_cols=121 Identities=14% Similarity=0.082 Sum_probs=86.7
Q ss_pred CChhhHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--cChHHHHHHHHHHHhcC
Q psy3014 373 IDPVKAEEAKERGNELFK--------NGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL--AAFDLGLKDCETCLKLD 442 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~ 442 (570)
.+|....+|...-.+... ..-++.-+.++..+++-+|.+...|..+-.++... .++..-+...++.++.+
T Consensus 61 ~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~D 140 (328)
T COG5536 61 KNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSD 140 (328)
T ss_pred hCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhccc
Confidence 566666666554444333 22356667888999999999999999988887765 66778888889999999
Q ss_pred CCCHHHHHHHHHHH------HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 443 PKFLKGWIRKGKIL------QGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 443 p~~~~~~~~l~~~~------~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
|.+...|...-.++ ..-..+..-.++-..++..|+-|..+|.+.......+
T Consensus 141 srNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~ 197 (328)
T COG5536 141 SRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERR 197 (328)
T ss_pred ccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHH
Confidence 99887776544444 3334455557777788899999999998874444333
No 421
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=80.47 E-value=3.8 Score=28.57 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=24.9
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIK 39 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 39 (570)
...+..+...|...-..|+|++|+.+|.++|+
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34567778888888888888888888877764
No 422
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=80.30 E-value=28 Score=27.71 Aligned_cols=119 Identities=10% Similarity=0.123 Sum_probs=58.8
Q ss_pred HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 408 (570)
...+.....+.+++.++. .++.++..+..+..++.+.+ ..+.+..+.. .
T Consensus 18 ~~~~~~~~l~~yLe~~~~--------------------------~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~----~ 66 (140)
T smart00299 18 EKRNLLEELIPYLESALK--------------------------LNSENPALQTKLIELYAKYD-PQKEIERLDN----K 66 (140)
T ss_pred HhCCcHHHHHHHHHHHHc--------------------------cCccchhHHHHHHHHHHHHC-HHHHHHHHHh----c
Confidence 344566666677766666 44555666666666666543 3445555542 1
Q ss_pred CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy3014 409 PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQ 488 (570)
Q Consensus 409 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 488 (570)
++... .-..+.++.+.+-++++...+.+. ..+..+.. .+....++++.|++++.+ +++++.|..+..
T Consensus 67 ~~~yd-~~~~~~~c~~~~l~~~~~~l~~k~----~~~~~Al~---~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~ 133 (140)
T smart00299 67 SNHYD-IEKVGKLCEKAKLYEEAVELYKKD----GNFKDAIV---TLIEHLGNYEKAIEYFVK-----QNNPELWAEVLK 133 (140)
T ss_pred cccCC-HHHHHHHHHHcCcHHHHHHHHHhh----cCHHHHHH---HHHHcccCHHHHHHHHHh-----CCCHHHHHHHHH
Confidence 11111 112333334445555555555442 11111111 111223677777777665 346667766665
Q ss_pred HHH
Q psy3014 489 CSI 491 (570)
Q Consensus 489 ~~~ 491 (570)
.+.
T Consensus 134 ~~l 136 (140)
T smart00299 134 ALL 136 (140)
T ss_pred HHH
Confidence 443
No 423
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=80.15 E-value=7 Score=34.04 Aligned_cols=111 Identities=16% Similarity=0.111 Sum_probs=67.9
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHH------------HHHHHHHHHHHhcCHH-HH-HHHHHHHh-hcccChhHHHH
Q psy3014 255 NEAYKKKNFEEALAHYNKAVEFDPTDIT------------FQNNIAAVYFERKEYD-QC-IEQYIQKI-ENRADFKLIAK 319 (570)
Q Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~------------~~~~la~~~~~~~~~~-~A-~~~~~~~l-~~~~~~~~~~~ 319 (570)
...+..|+++.|+....-+|+.+-.-|+ -...-+......|+.- -. ...+..+. ..+-.+...+.
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAK 170 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAK 170 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHH
Confidence 3456789999999999999998532221 1122333334444421 11 12222222 12222334467
Q ss_pred HHHHHHHHHH---------HcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Q psy3014 320 ALQRIGNCYK---------KMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365 (570)
Q Consensus 320 ~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 365 (570)
.+...|..+. ..++...|+.++++++..++...+...+.+++..+.
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~lr 225 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHh
Confidence 7777788773 456888999999999998888777766666665544
No 424
>KOG4014|consensus
Probab=80.11 E-value=33 Score=28.49 Aligned_cols=30 Identities=27% Similarity=0.206 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy3014 459 MQQQSKAIDAYEKALELDASNAEAVEGYRQCS 490 (570)
Q Consensus 459 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 490 (570)
..+.+.|.++--+|-+++ ++.+..++.+++
T Consensus 181 ~kDMdka~qfa~kACel~--~~~aCAN~SrMy 210 (248)
T KOG4014|consen 181 SKDMDKALQFAIKACELD--IPQACANVSRMY 210 (248)
T ss_pred hHhHHHHHHHHHHHHhcC--ChHHHhhHHHHH
Confidence 345555555555555442 445555555544
No 425
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=77.94 E-value=5.8 Score=26.95 Aligned_cols=32 Identities=38% Similarity=0.389 Sum_probs=24.2
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKL 40 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 40 (570)
..+-.+...|..+-..|+|++|+.+|.+++..
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34566777888888888888888888887653
No 426
>PRK11619 lytic murein transglycosylase; Provisional
Probab=77.93 E-value=95 Score=32.51 Aligned_cols=79 Identities=15% Similarity=-0.023 Sum_probs=50.7
Q ss_pred HHHHHHccCCCCcchhhchhHHH---hcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccC
Q psy3014 33 AYSEAIKLDGTNHILFSNRSAAF---AKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLD 109 (570)
Q Consensus 33 ~~~~al~~~p~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 109 (570)
-+...+..+|+.+..-....... .+.+++..-+.++. ..|.+....+..+......|+.++|.....++-...
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSP----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 44445566777665544444333 34566776666332 247788888888888999999888888777776554
Q ss_pred CCcHHH
Q psy3014 110 PNNEQM 115 (570)
Q Consensus 110 p~~~~~ 115 (570)
...+..
T Consensus 160 ~~~p~~ 165 (644)
T PRK11619 160 KSLPNA 165 (644)
T ss_pred CCCChH
Confidence 443333
No 427
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=77.89 E-value=5.5 Score=27.65 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=26.0
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKL 40 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 40 (570)
..+-.+...|..+-..|+|++|+.+|..+++.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45677888888888899999999998888753
No 428
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=75.96 E-value=9.2 Score=33.33 Aligned_cols=92 Identities=18% Similarity=0.115 Sum_probs=52.1
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCcchhhc-h-----------hHHHhcccCH-HHH-HHHHhchhc--cCCCCh--hHH
Q psy3014 21 ALQANNFIEAIEAYSEAIKLDGTNHILFSN-R-----------SAAFAKEGNY-EKA-LEDAEKTIS--LKPDWP--KGY 82 (570)
Q Consensus 21 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-l-----------a~~~~~~g~~-~~A-~~~~~~al~--~~p~~~--~~~ 82 (570)
.+..|+|+.|+++..-+|+.+-.-|.-+.. . +......|+. +-+ ...+..+.. --|+.+ ..+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 356799999999999999986433332221 1 1122223331 111 111222211 113333 344
Q ss_pred hHHHHHHh---------hccCHHHHHHHHHHhhccCCCc
Q psy3014 83 SRKGSALS---------YLGRYKESISTYEEGLKLDPNN 112 (570)
Q Consensus 83 ~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~ 112 (570)
-..|..+. ..++...|+..+++|+.++|..
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 55666663 4567889999999999999874
No 429
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.76 E-value=61 Score=29.25 Aligned_cols=101 Identities=9% Similarity=-0.094 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCHH-HHHHHHHHHhhcc---cCh
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEF-----DPTDITFQNNIAAVYFERKEYD-QCIEQYIQKIENR---ADF 314 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~~l~~~---~~~ 314 (570)
.+..+.++.=+..+.+.|++.-|.....-.++. .|.+......++.+....+.-+ +-....+++++-. ...
T Consensus 7 ~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~ 86 (260)
T PF04190_consen 7 DEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYK 86 (260)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-T
T ss_pred HHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCC
Confidence 455677777788888889888887665555443 3445555567777766655332 3334444444322 111
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3014 315 KLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344 (570)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 344 (570)
...+..+..+|..+.+.|++.+|..+|-..
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 122789999999999999999998887443
No 430
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.60 E-value=1.1e+02 Score=31.97 Aligned_cols=43 Identities=23% Similarity=0.340 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKI 308 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 308 (570)
..-.+....|......|++++|+.+|.-+ |+|+.+++++.+.+
T Consensus 412 ~~~~i~~~~A~~~e~~g~~~dAi~Ly~La---------------------~~~d~vl~lln~~L 454 (613)
T PF04097_consen 412 FLREIIEQAAREAEERGRFEDAILLYHLA---------------------EEYDKVLSLLNRLL 454 (613)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHT---------------------T-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------------hhHHHHHHHHHHHH
Confidence 44556666778888888888888877654 47777777777766
No 431
>KOG2758|consensus
Probab=75.30 E-value=67 Score=29.46 Aligned_cols=76 Identities=13% Similarity=0.085 Sum_probs=53.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC--CCHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 365 KEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR--NP--DDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
+.+.+-....|+..++++..+...+.-|+|..|-.++-..... +| +...+++..-..-.-+.+|+.|++.+.+.-+
T Consensus 116 ~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 116 QHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344444588999999999999999999999998876544433 22 2333444433344557799999998887654
No 432
>PF13041 PPR_2: PPR repeat family
Probab=74.79 E-value=17 Score=22.46 Aligned_cols=28 Identities=7% Similarity=0.272 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q psy3014 282 TFQNNIAAVYFERKEYDQCIEQYIQKIE 309 (570)
Q Consensus 282 ~~~~~la~~~~~~~~~~~A~~~~~~~l~ 309 (570)
..|..+-..+.+.|++++|.+.|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444555555556666666666655553
No 433
>KOG2561|consensus
Probab=73.13 E-value=17 Score=34.53 Aligned_cols=94 Identities=17% Similarity=0.123 Sum_probs=61.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH-----------hcCCCCHHHHHHHHHHHHHhcCh----------HHHHHHHHHHH
Q psy3014 381 AKERGNELFKNGKYADAVKEYTEAI-----------NRNPDDPKYYSNRAACYTKLAAF----------DLGLKDCETCL 439 (570)
Q Consensus 381 ~~~~~~~~~~~~~~~~A~~~~~~al-----------~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al 439 (570)
++..|.+.+....|++|+.++-.|- +...+.+..-..+.|||+.+.+. ..|.+.|.++.
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 4456777788888888887776553 33344555666678899988764 33444444432
Q ss_pred hc---------CCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 440 KL---------DPKFL------KGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 440 ~~---------~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
-- .|..+ ..+..-|.+.+++|+-++|.++++.+..
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 21 12222 2345578999999999999999998865
No 434
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.32 E-value=7.1 Score=26.97 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=24.0
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKL 40 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 40 (570)
..+..+...|...-..|+|++|+.+|..+++.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 35666777777777788888888888888764
No 435
>KOG0276|consensus
Probab=71.75 E-value=53 Score=33.04 Aligned_cols=77 Identities=12% Similarity=0.025 Sum_probs=53.0
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHH
Q psy3014 386 NELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL--------DPKFLKGWIRKGKILQ 457 (570)
Q Consensus 386 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~ 457 (570)
.+..+.|+++.|.....++ ++..-|-.||.+....|++..|.++|.++-.. ...+...+..+|....
T Consensus 645 elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHH
Confidence 3456778888887765544 56777889999999999999999999987553 2334555555565555
Q ss_pred hCCCHHHHHH
Q psy3014 458 GMQQQSKAID 467 (570)
Q Consensus 458 ~~g~~~~A~~ 467 (570)
+.|...-|.-
T Consensus 720 ~~g~~N~AF~ 729 (794)
T KOG0276|consen 720 KQGKNNLAFL 729 (794)
T ss_pred hhcccchHHH
Confidence 5555544443
No 436
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=71.22 E-value=42 Score=32.24 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=42.0
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy3014 260 KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQK 307 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 307 (570)
.+..-+|+.+++.++..+|.|......+..+|...|-...|...|...
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 344668889999999999999999999999999999999999998664
No 437
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=71.16 E-value=80 Score=28.53 Aligned_cols=133 Identities=11% Similarity=0.063 Sum_probs=80.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcC-CC-----CHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChh---HHHHHHHHH
Q psy3014 254 GNEAYKKKNFEEALAHYNKAVEFD-PT-----DITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFK---LIAKALQRI 324 (570)
Q Consensus 254 a~~~~~~~~~~~A~~~~~~al~~~-p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~~~l 324 (570)
+..-......++-++-+++.++.. .+ -.+++.++|..|.+.++.+.+.+.+.+.++..-... ...-+...+
T Consensus 82 ~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRl 161 (412)
T COG5187 82 GRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRL 161 (412)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHH
Confidence 333333444455555565444331 12 257889999999999999999988888775432221 123344567
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
|.+|..+.-.++.++..+..++...+.+- .-......|...+...+|.+|-..+..+
T Consensus 162 g~~y~d~~vV~e~lE~~~~~iEkGgDWeR-----------------------rNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~ 218 (412)
T COG5187 162 GLIYGDRKVVEESLEVADDIIEKGGDWER-----------------------RNRYKVYKGIFKMMRRNFKEAAILLSDI 218 (412)
T ss_pred HHhhccHHHHHHHHHHHHHHHHhCCCHHh-----------------------hhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777666666666666666664433211 1122234566777778888888888887
Q ss_pred HhcCC
Q psy3014 405 INRNP 409 (570)
Q Consensus 405 l~~~p 409 (570)
+....
T Consensus 219 l~tF~ 223 (412)
T COG5187 219 LPTFE 223 (412)
T ss_pred hcccc
Confidence 76543
No 438
>PF13041 PPR_2: PPR repeat family
Probab=70.43 E-value=23 Score=21.92 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=12.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh
Q psy3014 381 AKERGNELFKNGKYADAVKEYTEAIN 406 (570)
Q Consensus 381 ~~~~~~~~~~~~~~~~A~~~~~~al~ 406 (570)
|..+-..+.+.|++++|.+.|++..+
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34444445555555555555555443
No 439
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=70.34 E-value=15 Score=19.93 Aligned_cols=29 Identities=28% Similarity=0.155 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 465 AIDAYEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 465 A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
.++.-.+++..+|.|..+|.....+...+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 34566777788888888887777776654
No 440
>KOG2561|consensus
Probab=70.04 E-value=34 Score=32.68 Aligned_cols=100 Identities=16% Similarity=0.075 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----------CCCCHHHHHHHHHHHHHhcCH----------HHHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEF-----------DPTDITFQNNIAAVYFERKEY----------DQCIEQYI 305 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~ 305 (570)
+-.++..|...+....|++|+.++-.|=+. -.+.+-....+.+||+.+++. ..|.+.|.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 345667788888999999999887666443 233344556677888887663 33444444
Q ss_pred HHhh--------c----ccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 306 QKIE--------N----RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 306 ~~l~--------~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
++.- + .|.-......+..-|.+.+..|+-++|.++++.+..
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4331 1 222223345556679999999999999999998876
No 441
>KOG0687|consensus
Probab=69.81 E-value=93 Score=28.73 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT------DITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLI 317 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 317 (570)
..-.+++...|..|.+.|+-+.|.+.+.+..+..-. -.-....+|..|....-..+.++-.+..++...+....
T Consensus 101 ~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr 180 (393)
T KOG0687|consen 101 SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR 180 (393)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh
Confidence 356788888999999999999998888776654321 12334566777776666666666666666666554333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT 350 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 350 (570)
-..-..-|.......++.+|-..|-.++....+
T Consensus 181 NRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 181 NRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 344444566667778888888888888776554
No 442
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=69.58 E-value=99 Score=29.62 Aligned_cols=55 Identities=13% Similarity=0.045 Sum_probs=38.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCC-----cchhhchhHHH--hcccCHHHHHHHHhc
Q psy3014 16 DKGNAALQANNFIEAIEAYSEAIKLDGTN-----HILFSNRSAAF--AKEGNYEKALEDAEK 70 (570)
Q Consensus 16 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~--~~~g~~~~A~~~~~~ 70 (570)
..+..+++.++|..|...|.+++...++. ...+..++.+| ...-++++|.+.+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 35668899999999999999999875432 22333444443 556777888888875
No 443
>KOG2063|consensus
Probab=69.56 E-value=1.7e+02 Score=31.65 Aligned_cols=32 Identities=28% Similarity=0.188 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEF 276 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 276 (570)
....-+..++..|...|+.++|++.+.+....
T Consensus 502 ~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 502 KKSKKYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred HhcccHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 44556778888888999999999999888773
No 444
>KOG0687|consensus
Probab=68.33 E-value=1e+02 Score=28.53 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHH
Q psy3014 281 ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF---KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLI 357 (570)
Q Consensus 281 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 357 (570)
.+++...|..|.+.|+-+.|.+.+.+..+..-.- -.+.-....+|..|....-..+.++-.+..++...+.+-
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeR---- 179 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWER---- 179 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhh----
Confidence 5688889999999999999998888876543221 122445566777776655555555555555543332211
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q psy3014 358 SEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 358 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 408 (570)
.-......|...+...+|.+|-..|-.++...
T Consensus 180 -------------------rNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 180 -------------------RNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred -------------------hhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 11222334666677788888888888877554
No 445
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=68.27 E-value=65 Score=29.23 Aligned_cols=65 Identities=22% Similarity=0.157 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhC----------------------CCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy3014 431 GLKDCETCLKLDPKFLKGWIRKGKILQGM----------------------QQQSKAIDAYEKALELDASNAEAVEGYRQ 488 (570)
Q Consensus 431 A~~~~~~al~~~p~~~~~~~~l~~~~~~~----------------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 488 (570)
-...++.=++..|++..++..+|..+... .-.+.|..++.+|++++|....+...+-.
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 34444455556676666666666655442 12577888899999999999999888888
Q ss_pred HHHHhcC
Q psy3014 489 CSIAVSS 495 (570)
Q Consensus 489 ~~~~~~~ 495 (570)
+-..+|.
T Consensus 142 ~s~~fge 148 (277)
T PF13226_consen 142 ISAYFGE 148 (277)
T ss_pred HHhhcCC
Confidence 8888886
No 446
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=67.78 E-value=13 Score=25.81 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=24.3
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKL 40 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 40 (570)
..+..+...|...-..|+|++|+.+|.++++.
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667777888888888888888888777653
No 447
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.65 E-value=23 Score=30.26 Aligned_cols=44 Identities=18% Similarity=0.068 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 433 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
+..++.+...| ++..+..++.++...|+.++|.....++..+.|
T Consensus 132 ~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 132 EWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33344444444 344555555555555555555555555555555
No 448
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=67.56 E-value=47 Score=26.04 Aligned_cols=50 Identities=16% Similarity=0.120 Sum_probs=20.7
Q ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q psy3014 259 KKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKI 308 (570)
Q Consensus 259 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 308 (570)
.+|+-++--+.+....+....+|..+..+|.+|.+.|+..++.+.+.++.
T Consensus 98 ~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 98 KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 34444444444444443333445555555555555555555555555544
No 449
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=66.69 E-value=14 Score=25.64 Aligned_cols=31 Identities=32% Similarity=0.375 Sum_probs=21.8
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIK 39 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 39 (570)
..+..+...|..+-..|++++|+.+|.++++
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555667777777777777777777777654
No 450
>KOG2063|consensus
Probab=65.70 E-value=2e+02 Score=31.11 Aligned_cols=179 Identities=12% Similarity=0.115 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhccc-ChhHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHhcccCCHHHHHHHHH
Q psy3014 283 FQNNIAAVYFERKEYDQCIEQYIQKIENRA-DFKLIAKALQRIGNCYKKMEDW--KNAKVYFEKSMSEHRTPEIRTLISE 359 (570)
Q Consensus 283 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~ 359 (570)
-+..|+.+|...|++++|++.+.+...... .+......+-.+-..+...+.. +-..++-.-.+..+|...+......
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 356788888999999999999988876431 2211233444444444444444 5555555555554443211100000
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcC--------hHH
Q psy3014 360 MEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD-DPKYYSNRAACYTKLAA--------FDL 430 (570)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~--------~~~ 430 (570)
.. +.+-.+++ ....-+......+-++.+++.++..... ....+..++..|...=+ -++
T Consensus 586 ~~------~~~~sis~-------~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e 652 (877)
T KOG2063|consen 586 DK------QEAESISR-------DDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEE 652 (877)
T ss_pred Ch------hhhccCCH-------HHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhcccc
Confidence 00 00000111 1122245556666777777777766544 34444444444443211 223
Q ss_pred HHHH--HHHHHh-------cCCC-------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 431 GLKD--CETCLK-------LDPK-------FLKGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 431 A~~~--~~~al~-------~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
+.+. .++... .+|+ ....|...+.++.++|+.++|+..|-..+.
T Consensus 653 ~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 653 APETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred chhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 3333 222221 1221 134556677777777777777777766654
No 451
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=65.05 E-value=13 Score=19.72 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=10.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHH
Q psy3014 451 RKGKILQGMQQQSKAIDAYEKA 472 (570)
Q Consensus 451 ~l~~~~~~~g~~~~A~~~~~~a 472 (570)
.+-..|.+.|++++|.+.|++.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHH
Confidence 3444455555555555555444
No 452
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=64.52 E-value=15 Score=25.43 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKL 40 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 40 (570)
.+..++..|...-..|+|++|+.+|..+++.
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5566777777777888888888888777653
No 453
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=64.09 E-value=68 Score=25.05 Aligned_cols=33 Identities=27% Similarity=0.187 Sum_probs=20.9
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAI 405 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 405 (570)
+....+..|...|..+...|++++|.+.|+.++
T Consensus 94 IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 94 IGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp TSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 445556666666777777777777777766553
No 454
>KOG4014|consensus
Probab=64.04 E-value=86 Score=26.21 Aligned_cols=184 Identities=14% Similarity=0.127 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-----HhcCHHHHHHHHHHHhhcccChhHHH
Q psy3014 245 RSAKKEKELGNEAY-KKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYF-----ERKEYDQCIEQYIQKIENRADFKLIA 318 (570)
Q Consensus 245 ~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-----~~~~~~~A~~~~~~~l~~~~~~~~~~ 318 (570)
..|+....+|..+. -+.+|++|..+|..--..+ ..+..-+.+|..++ ..++...|++.+..+...+. +
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~-----~ 105 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANI-----P 105 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCC-----H
Confidence 35777888887764 3567888888888755443 23455566665544 24578899999999887443 5
Q ss_pred HHHHHHHHHHHHc-----C--CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC
Q psy3014 319 KALQRIGNCYKKM-----E--DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKN 391 (570)
Q Consensus 319 ~~~~~l~~~~~~~-----~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (570)
.+...+|.+...- + +..+|..++.++-.. .+..+-+.+...++..
T Consensus 106 ~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------------------------~~~~aCf~LS~m~~~g 157 (248)
T KOG4014|consen 106 QACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------------------------EDGEACFLLSTMYMGG 157 (248)
T ss_pred HHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------------------------CCchHHHHHHHHHhcc
Confidence 6777777776642 2 367888888888652 3444555555555433
Q ss_pred CCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----CCCHHHH
Q psy3014 392 GKYADAVKEYTEAINRNPD--DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG----MQQQSKA 465 (570)
Q Consensus 392 ~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A 465 (570)
.+ ++ ....|. .|. ..+..+.-..+.+.|..+--+|-+++ ++.+-.++.+.|.. -++-++|
T Consensus 158 ~~--k~-------~t~ap~~g~p~---~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~A 223 (248)
T KOG4014|consen 158 KE--KF-------KTNAPGEGKPL---DRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQA 223 (248)
T ss_pred ch--hh-------cccCCCCCCCc---chhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHH
Confidence 21 11 111331 121 23444455677888888888887764 45566666666643 2367788
Q ss_pred HHHHHHHHhhC
Q psy3014 466 IDAYEKALELD 476 (570)
Q Consensus 466 ~~~~~~al~~~ 476 (570)
..+-.+|.++.
T Consensus 224 ekyk~rA~e~~ 234 (248)
T KOG4014|consen 224 EKYKDRAKEIM 234 (248)
T ss_pred HHHHHHHHHHH
Confidence 88877777764
No 455
>KOG4521|consensus
Probab=63.78 E-value=2.4e+02 Score=31.31 Aligned_cols=183 Identities=16% Similarity=0.107 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHH------HcCC----HHHHHHHHHHHhcccCC
Q psy3014 281 ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYK------KMED----WKNAKVYFEKSMSEHRT 350 (570)
Q Consensus 281 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~------~~~~----~~~A~~~~~~~~~~~~~ 350 (570)
+...+.+|.+|...|+..+|+.+|.++..-.... .++..+..... ..|+ ...|..+|.++++.
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~----~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rl--- 992 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEG----NALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRL--- 992 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccH----HHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHH---
Confidence 3455778888999999999999999988655443 23322222110 2232 23356777777763
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc----CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHH
Q psy3014 351 PEIRTLISEMEKKIKEEEKKAY----IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD---PKYYSNRAACYT 423 (570)
Q Consensus 351 ~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 423 (570)
....+..+.+.+...++++ .+|..+.....+-..+...|.+-+|.. ++-.+|+. ...+..+-.+++
T Consensus 993 ---le~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~----ai~~npdserrrdcLRqlvivLf 1065 (1480)
T KOG4521|consen 993 ---LEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYK----AILRNPDSERRRDCLRQLVIVLF 1065 (1480)
T ss_pred ---HHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHH----HHHcCCcHHHHHHHHHHHHHHHH
Confidence 2333333444444444443 445556666666677778888888875 34445653 335666777777
Q ss_pred HhcChH------------HHHH-HHHHHHhcCCCCHHHHHH-HHHHHHhCCCHHHHH-HHHHHHHhhCC
Q psy3014 424 KLAAFD------------LGLK-DCETCLKLDPKFLKGWIR-KGKILQGMQQQSKAI-DAYEKALELDA 477 (570)
Q Consensus 424 ~~~~~~------------~A~~-~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~-~~~~~al~~~p 477 (570)
..|.++ +-.. .++.+-+..|....-++. +--.+...+++.+|- ..|+.+..+..
T Consensus 1066 ecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1066 ECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred hccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcc
Confidence 777653 2222 344444444544333333 344557778887665 46777777654
No 456
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=63.19 E-value=25 Score=26.49 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=30.2
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhccc
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEG 59 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 59 (570)
..+......|...+..||+..|.+...++-+..+..+..+..-+.+-..+|
T Consensus 57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 445566677777777777777777777775554443333433344443333
No 457
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=63.09 E-value=1.2e+02 Score=27.52 Aligned_cols=148 Identities=11% Similarity=0.027 Sum_probs=84.8
Q ss_pred CCCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHhhc---ccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCH
Q psy3014 277 DPTDITFQ--NNIAAVYFERKEYDQCIEQYIQKIEN---RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTP 351 (570)
Q Consensus 277 ~p~~~~~~--~~la~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 351 (570)
+|.....| +..+..-...+..++-++.+.+.++. +.......+++.++|..|.+.++.+.+.+.+.+.+...-..
T Consensus 69 n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st 148 (412)
T COG5187 69 NPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST 148 (412)
T ss_pred CCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc
Confidence 55543333 33333333344555566666554422 11223458899999999999999999999888877622110
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCh
Q psy3014 352 EIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD---PKYYSNRAACYTKLAAF 428 (570)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~ 428 (570)
. ..-+..-....+|.+|-.+.-..+.++.....++...+- -..-...|.......++
T Consensus 149 g--------------------~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnF 208 (412)
T COG5187 149 G--------------------LKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNF 208 (412)
T ss_pred c--------------------cchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhh
Confidence 0 111222233456666655555566666666666554321 11223345666667788
Q ss_pred HHHHHHHHHHHhcCCC
Q psy3014 429 DLGLKDCETCLKLDPK 444 (570)
Q Consensus 429 ~~A~~~~~~al~~~p~ 444 (570)
.+|-..+..++....+
T Consensus 209 keAa~Ll~d~l~tF~S 224 (412)
T COG5187 209 KEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHHhccccc
Confidence 8888888877765443
No 458
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=62.69 E-value=18 Score=25.00 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIK 39 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 39 (570)
.+..+...|...-..|+|++|+.+|..+++
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566777777777888888888777765
No 459
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.54 E-value=1.4e+02 Score=27.82 Aligned_cols=81 Identities=10% Similarity=0.047 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCCCHHHH---HHHHHHHHHhcCHHHHHHHHHHHh---hc---------------------------ccC
Q psy3014 267 LAHYNKAVEFDPTDITFQ---NNIAAVYFERKEYDQCIEQYIQKI---EN---------------------------RAD 313 (570)
Q Consensus 267 ~~~~~~al~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~~l---~~---------------------------~~~ 313 (570)
-..|+++.+.-|++.... ..-|.+++..++|.+....+..+- +. .|.
T Consensus 41 ~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~ 120 (449)
T COG3014 41 KKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGN 120 (449)
T ss_pred hhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCch
Confidence 344555555555443322 455777888888877666655443 11 111
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy3014 314 FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSE 347 (570)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 347 (570)
.-....+.+.+|.-|...++++.|+.-|+++...
T Consensus 121 ~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 121 IYEGVLINYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred hHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 1233556677888999999999999999998873
No 460
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=61.44 E-value=40 Score=28.07 Aligned_cols=38 Identities=8% Similarity=-0.024 Sum_probs=29.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy3014 452 KGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCS 490 (570)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 490 (570)
...++.+.|.+++|.+.+++... +|++......|..+-
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II 154 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMII 154 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHH
Confidence 44577888999999999999888 888777766665553
No 461
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=61.32 E-value=26 Score=23.69 Aligned_cols=28 Identities=36% Similarity=0.392 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAV 274 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al 274 (570)
+..+...|.-.-..|++++|+.+|.+++
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444455555555666666666555544
No 462
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=60.39 E-value=71 Score=24.07 Aligned_cols=52 Identities=15% Similarity=0.083 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK 295 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 295 (570)
..........|.+.+..|++..|.+...++-+..+..+-.+..-+..-..+|
T Consensus 56 ~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 3445555666677777777777777777776554444444444444444444
No 463
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=60.11 E-value=17 Score=25.18 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=20.9
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIK 39 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 39 (570)
..+..++..|...-..|+|++|..+|..+++
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3455666667777777777777777777664
No 464
>KOG2114|consensus
Probab=59.59 E-value=2.4e+02 Score=29.97 Aligned_cols=93 Identities=11% Similarity=-0.056 Sum_probs=47.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcChHHHHHHHHHHHhc-C-CCCHHHH----HHHHHHHH
Q psy3014 385 GNELFKNGKYADAVKEYTEAINRNPDD-PKYYSNRAACYTKLAAFDLGLKDCETCLKL-D-PKFLKGW----IRKGKILQ 457 (570)
Q Consensus 385 ~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~----~~l~~~~~ 457 (570)
-.++...++|++|+.++... .|+. .......|..+... .+++-...+-+.+.. . +...... ...-.+..
T Consensus 497 ~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~i 572 (933)
T KOG2114|consen 497 DILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGI 572 (933)
T ss_pred HHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheee
Confidence 34556778899998887653 2222 22344455555543 344444444433332 1 1111110 11223334
Q ss_pred hCCCHHHHHHHHHHHHhhCCCcHH
Q psy3014 458 GMQQQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 458 ~~g~~~~A~~~~~~al~~~p~~~~ 481 (570)
-.+++..-...++...+..|+.++
T Consensus 573 f~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 573 FSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred eccCHHHHHHHHHHHHhcCCCchh
Confidence 456777777777767777776655
No 465
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=59.55 E-value=20 Score=19.54 Aligned_cols=22 Identities=9% Similarity=-0.032 Sum_probs=10.3
Q ss_pred HHHHHHHHhcChHHHHHHHHHH
Q psy3014 417 NRAACYTKLAAFDLGLKDCETC 438 (570)
Q Consensus 417 ~la~~~~~~~~~~~A~~~~~~a 438 (570)
.+-..|.+.|++++|.+.|.+.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444445555555544443
No 466
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=59.12 E-value=3.1 Score=42.00 Aligned_cols=99 Identities=11% Similarity=-0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHh--hcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHH
Q psy3014 282 TFQNNIAAVYFERKEYDQCIEQYIQKI--ENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISE 359 (570)
Q Consensus 282 ~~~~~la~~~~~~~~~~~A~~~~~~~l--~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 359 (570)
.....-+..+...|++..|...+.+.- .+.+.. ........+.+....|+++.|+..+...-. ...
T Consensus 25 ~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q--~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~-~~l--------- 92 (536)
T PF04348_consen 25 QLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQ--QARYQLLRARLALAQGDPEQALSLLNAQDL-WQL--------- 92 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHH--HHHHHHHHHHHHHhcCCHHHHHHHhccCCc-ccC---------
Confidence 344555667777788888887777665 223322 244555667777777888888777764111 000
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q psy3014 360 MEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAI 405 (570)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 405 (570)
........+...+.++...|++-+|...+-..-
T Consensus 93 -------------~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~ 125 (536)
T PF04348_consen 93 -------------PPEQQARYHQLRAQAYEQQGDPLAAARERIALD 125 (536)
T ss_dssp ----------------------------------------------
T ss_pred -------------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 111223344556777777777777766554443
No 467
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=58.99 E-value=76 Score=30.49 Aligned_cols=47 Identities=11% Similarity=-0.037 Sum_probs=40.3
Q ss_pred cCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3014 295 KEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344 (570)
Q Consensus 295 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 344 (570)
+..-+|+-+++.++...|.+ ......+..+|...|-...|...|...
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n---~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHN---YQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 34567888889999999999 889999999999999999999998654
No 468
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=58.94 E-value=84 Score=28.53 Aligned_cols=109 Identities=10% Similarity=0.013 Sum_probs=74.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCC--CcchhhchhHH---HhcccCH----HHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 17 KGNAALQANNFIEAIEAYSEAIKLDGT--NHILFSNRSAA---FAKEGNY----EKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 17 ~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~---~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
....++..++|++=-..|.+..+...+ ..+..+..+.. ...+... ..-...++.-++..|++..+++.+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 456678899999988888888754333 22221222211 2222211 24677778888999999999999888
Q ss_pred HHhhcc----------------------CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 88 ALSYLG----------------------RYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 88 ~~~~~g----------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
.+.... -.+.|...+.+++.++|....+...+..+...
T Consensus 86 ~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~ 145 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAY 145 (277)
T ss_pred HHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhh
Confidence 876432 24678889999999999999888877766544
No 469
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.58 E-value=40 Score=28.75 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC
Q psy3014 395 ADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444 (570)
Q Consensus 395 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 444 (570)
+..++..++.+...| ++.++..++.++...|+.++|.....++..+.|.
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 445566666777777 6888899999999999999999999999999983
No 470
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=57.44 E-value=33 Score=23.84 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVE 275 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 275 (570)
.+..+...|.-.-..|+|++|+.+|..+++
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344555566666666777777776666654
No 471
>KOG1920|consensus
Probab=57.44 E-value=3.1e+02 Score=30.57 Aligned_cols=19 Identities=5% Similarity=0.051 Sum_probs=10.8
Q ss_pred HHHHcCCHHHHHHHHHHHh
Q psy3014 327 CYKKMEDWKNAKVYFEKSM 345 (570)
Q Consensus 327 ~~~~~~~~~~A~~~~~~~~ 345 (570)
+-..+++|+.|+..+.++-
T Consensus 889 ID~~L~ry~~AL~hLs~~~ 907 (1265)
T KOG1920|consen 889 IDDYLKRYEDALSHLSECG 907 (1265)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 3344566666666665543
No 472
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=57.32 E-value=41 Score=25.97 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
..+|..+...|++++|..+|-+|+...|+-.+.+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL 100 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELL 100 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 3477888888888888888888888888755444
No 473
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=56.39 E-value=53 Score=33.29 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=63.3
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHH
Q psy3014 20 AALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESI 99 (570)
Q Consensus 20 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 99 (570)
.+.++...+.+....+.-+.-...++...+..+..+-.-|+.+.|-.+|++.+..+|+ .+++..|.-+.+.|-...|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 94 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQ 94 (578)
T ss_pred HHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHH
Confidence 3445566777777777766655556666777788888888889999999999888887 67788888888888888888
Q ss_pred HHHH
Q psy3014 100 STYE 103 (570)
Q Consensus 100 ~~~~ 103 (570)
..++
T Consensus 95 ~~~~ 98 (578)
T PRK15490 95 LILK 98 (578)
T ss_pred HHHH
Confidence 7777
No 474
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.49 E-value=1.8e+02 Score=27.16 Aligned_cols=181 Identities=9% Similarity=-0.016 Sum_probs=86.4
Q ss_pred HHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHH--------HHHHHHHHHHHHHHHHHHhcC
Q psy3014 302 EQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE--------IRTLISEMEKKIKEEEKKAYI 373 (570)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~ 373 (570)
..|++..+.-|+.....-.-..-|.++...++|.+....+..+-....... .....|. .-.-......
T Consensus 42 ~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGs----t~vNDNi~~Y 117 (449)
T COG3014 42 KAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGA----TMINDNVRAY 117 (449)
T ss_pred hHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhh----hhhccchhhc
Confidence 345555555555533223334557888888888877777665543211100 0000000 0000001112
Q ss_pred Chh---hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH-----HHHHHHHH--hcChHHHHHHHHHHHh---
Q psy3014 374 DPV---KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYS-----NRAACYTK--LAAFDLGLKDCETCLK--- 440 (570)
Q Consensus 374 ~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-----~la~~~~~--~~~~~~A~~~~~~al~--- 440 (570)
+|. .....+.+|.-|+..++++.|.-.|+++......--+.+. ....+-.. ..+++..+..-.++++
T Consensus 118 ~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y 197 (449)
T COG3014 118 GGNIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTY 197 (449)
T ss_pred CchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHH
Confidence 232 2445677888999999999999999998754321111000 00000000 0011111111111110
Q ss_pred --------c--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy3014 441 --------L--DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486 (570)
Q Consensus 441 --------~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 486 (570)
. +-.++.+-+..|..+.-.|++.++...+..++-+.|+...+...+
T Consensus 198 ~ny~~~yea~~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~qY 253 (449)
T COG3014 198 SNYLDKYEAYQGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQY 253 (449)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHHHHh
Confidence 0 122344555566666667777777777777777777754444433
No 475
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=54.92 E-value=2.7e+02 Score=29.10 Aligned_cols=38 Identities=8% Similarity=0.171 Sum_probs=23.1
Q ss_pred HhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3014 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344 (570)
Q Consensus 307 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 344 (570)
.+...........+....|.-....|++++|+..|.-+
T Consensus 403 Li~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La 440 (613)
T PF04097_consen 403 LIKFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLA 440 (613)
T ss_dssp GGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33344333344566666777777888888888877655
No 476
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=54.78 E-value=73 Score=24.79 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy3014 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYF 292 (570)
Q Consensus 242 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 292 (570)
...+..+.+..+-..++..-+.+.|..+|+++++.+|++..++..+....-
T Consensus 71 k~DeY~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 71 KWDEYSEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp -HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 345667777777777888888889999999999999998888776665543
No 477
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=54.60 E-value=18 Score=25.04 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=7.0
Q ss_pred CCHHHHHHHHHHHHh
Q psy3014 460 QQQSKAIDAYEKALE 474 (570)
Q Consensus 460 g~~~~A~~~~~~al~ 474 (570)
|+|++|..+|..+++
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 444444444444443
No 478
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=54.52 E-value=67 Score=24.74 Aligned_cols=31 Identities=10% Similarity=0.043 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH----HhhCCC
Q psy3014 448 GWIRKGKILQGMQQQSKAIDAYEKA----LELDAS 478 (570)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~a----l~~~p~ 478 (570)
.-.++|..+..+|+.+-.+++++-| +.+-|.
T Consensus 52 sCHNLA~FWR~~gd~~yELkYLqlASE~VltLiPQ 86 (140)
T PF10952_consen 52 SCHNLADFWRSQGDSDYELKYLQLASEKVLTLIPQ 86 (140)
T ss_pred HHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhccC
Confidence 3457888888899888888888655 445554
No 479
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=54.42 E-value=36 Score=18.83 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhC----CCHHHHHHHHHHHHhh
Q psy3014 448 GWIRKGKILQGM----QQQSKAIDAYEKALEL 475 (570)
Q Consensus 448 ~~~~l~~~~~~~----g~~~~A~~~~~~al~~ 475 (570)
+.+.+|.+|..- .+..+|+.+|+++.+.
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 445555555432 2666666666666543
No 480
>KOG4459|consensus
Probab=52.40 E-value=2.4e+02 Score=27.61 Aligned_cols=113 Identities=14% Similarity=0.131 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC----------------C-C---cchhhchhHHH-hcccCHHHHHHHHh
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDG----------------T-N---HILFSNRSAAF-AKEGNYEKALEDAE 69 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----------------~-~---~~~~~~la~~~-~~~g~~~~A~~~~~ 69 (570)
....+.-|...+..+++.+++..++.+|+..- . . ....-.-|-++ ..-|.+-+-..++.
T Consensus 31 ~~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~Cl~ 110 (471)
T KOG4459|consen 31 HELAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAACLR 110 (471)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHHHHHHH
Confidence 46677889999999999999999999987420 0 0 01111111111 12233333333444
Q ss_pred chhcc---CCCC----------hhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q psy3014 70 KTISL---KPDW----------PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123 (570)
Q Consensus 70 ~al~~---~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 123 (570)
++..- .|.. -..+..|-.+|.+.|+..+|++.-...+-.+|++..+...+....
T Consensus 111 rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq 177 (471)
T KOG4459|consen 111 RCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQ 177 (471)
T ss_pred HHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHH
Confidence 43322 2221 135667788899999999999999999999999988877655443
No 481
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=52.35 E-value=32 Score=24.15 Aligned_cols=29 Identities=14% Similarity=0.051 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIK 39 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 39 (570)
+-.++.+|..+-..|+.++|+.+|++++.
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 34445555555555555555555555554
No 482
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=52.08 E-value=2e+02 Score=26.81 Aligned_cols=131 Identities=16% Similarity=0.093 Sum_probs=77.1
Q ss_pred ccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh-----cCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCC
Q psy3014 260 KKNFEEALAHYNKAVEFD-PTDITFQNNIAAVYFER-----KEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMED 333 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 333 (570)
.+-.+++...+.+++... |.-....-.++.++... -+|..-..+|.-.....|+ +.+-.+.+.......-
T Consensus 269 r~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS----PvV~LNRAVAla~~~G 344 (415)
T COG4941 269 RALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS----PVVTLNRAVALAMREG 344 (415)
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC----CeEeehHHHHHHHhhh
Confidence 344677778888887653 44444444555554432 3566666666666666666 3445555655555555
Q ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Q psy3014 334 WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPK 413 (570)
Q Consensus 334 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 413 (570)
...++...+-...... -......+...|.++.+.|+.++|...|++++.+.++..+
T Consensus 345 p~agLa~ve~L~~~~~------------------------L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 345 PAAGLAMVEALLARPR------------------------LDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred HHhHHHHHHHhhcccc------------------------cccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 5666666555544111 1122334556677778888888888888888877776655
Q ss_pred HHHHH
Q psy3014 414 YYSNR 418 (570)
Q Consensus 414 ~~~~l 418 (570)
-.+.+
T Consensus 401 r~~l~ 405 (415)
T COG4941 401 RAFLR 405 (415)
T ss_pred HHHHH
Confidence 44433
No 483
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=50.20 E-value=42 Score=19.04 Aligned_cols=15 Identities=47% Similarity=0.461 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHHHhh
Q psy3014 461 QQSKAIDAYEKALEL 475 (570)
Q Consensus 461 ~~~~A~~~~~~al~~ 475 (570)
++++|+.+|+++-+.
T Consensus 23 d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHc
Confidence 456666666666543
No 484
>KOG4563|consensus
Probab=50.13 E-value=25 Score=32.72 Aligned_cols=62 Identities=19% Similarity=0.143 Sum_probs=46.1
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC--------CCcchhhchhHHHhcccCHHHHHHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDG--------TNHILFSNRSAAFAKEGNYEKALEDA 68 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~ 68 (570)
....+..+...|+..+.++++++|...|..|..+.. ....+++..|..++..++....+-..
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445678899999999999999999999999887632 23566677777777777666655443
No 485
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=50.05 E-value=5.4 Score=40.35 Aligned_cols=121 Identities=16% Similarity=0.063 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCC-CHHHHHHHHHHHHHhcChHHHHHHHHHH--HhcCCC-CHHH
Q psy3014 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAI--NRNPD-DPKYYSNRAACYTKLAAFDLGLKDCETC--LKLDPK-FLKG 448 (570)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~a--l~~~p~-~~~~ 448 (570)
+........-+..++..|++..|...+.+.- .+.|. ........|.+....|+++.|+..+... ..+.+. ....
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~ 100 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARY 100 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHH
Confidence 3345556667888999999999999988776 23332 3456677888999999999999998741 112221 2344
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 449 WIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
+..++.++...|++-+|...+-..-.+-++......+...+...+..
T Consensus 101 ~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~d~~~~~~N~~~iW~~L~~ 147 (536)
T PF04348_consen 101 HQLRAQAYEQQGDPLAAARERIALDPLLPDPQERQENQDQIWQALSQ 147 (536)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHc
Confidence 55678899999999888887766655554333333444444444444
No 486
>PRK12798 chemotaxis protein; Reviewed
Probab=49.09 E-value=2.6e+02 Score=27.12 Aligned_cols=227 Identities=13% Similarity=0.071 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCHHHHHHHHH-HHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEF-DPTDITFQNNIAA-VYFERKEYDQCIEQYIQKIENRADFKLIAKALQR 323 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 323 (570)
..+.-...|..-+-.|+-.+|.+.+...-.. -|.....+..|.. ..+...+..+|+..|..+--..|..-.--.++..
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRR 190 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRR 190 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 3445556677777888988888887764322 2233334443333 3455678889999999888777775332334444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Q psy3014 324 IGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTE 403 (570)
Q Consensus 324 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 403 (570)
--.+....|+.+++..+-.+.+..+. ..|--...+-.......+.++-.. ...+..
T Consensus 191 si~la~~~g~~~rf~~la~~Y~rRF~-----------------------~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~ 246 (421)
T PRK12798 191 SLFIAAQLGDADKFEALARNYLRRFR-----------------------HSPYASQFAQRFVDLVVRLDDEIR-DARLVE 246 (421)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHhc-----------------------cCchHHHHHHHHHHHHHhcccccc-HHHHHH
Confidence 44455778888887777766666443 233333333333444433332221 123555
Q ss_pred HHhc-CCC-CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHH--hh
Q psy3014 404 AINR-NPD-DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK----FLKGWIRKGKILQGMQQQSKAIDAYEKAL--EL 475 (570)
Q Consensus 404 al~~-~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~ 475 (570)
.+.. +|. ...+|..++..-.-.|+.+-|...-++++.+... ...+.+..|....-..++++|...+.+.- ++
T Consensus 247 ~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L 326 (421)
T PRK12798 247 ILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKL 326 (421)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhC
Confidence 5554 443 4668899999999999999999999999987532 34455556666666778888888887663 45
Q ss_pred CCCcHHHHHHHHHHHHHhcCC
Q psy3014 476 DASNAEAVEGYRQCSIAVSSN 496 (570)
Q Consensus 476 ~p~~~~~~~~l~~~~~~~~~~ 496 (570)
.|.+...+..-..+...+.+.
T Consensus 327 ~~~Dr~Ll~AA~~va~~V~~~ 347 (421)
T PRK12798 327 SERDRALLEAARSVARQVRRA 347 (421)
T ss_pred ChhhHHHHHHHHHHHHHHhcC
Confidence 677777776666666555553
No 487
>KOG4521|consensus
Probab=48.66 E-value=4.3e+02 Score=29.57 Aligned_cols=84 Identities=13% Similarity=0.045 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HH---HHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTD-IT---FQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~---~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
.|...-+++...+-.+.+.+.-..|++.-|++ +. ....+=.-+..+|.+-+|... +-.+|+......++..+
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a----i~~npdserrrdcLRql 1060 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKA----ILRNPDSERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHH----HHcCCcHHHHHHHHHHH
Confidence 34445566677888999999999999875544 32 233333345667888777653 45577776667888888
Q ss_pred HHHHHHcCCHHH
Q psy3014 325 GNCYKKMEDWKN 336 (570)
Q Consensus 325 ~~~~~~~~~~~~ 336 (570)
-.+++..|+++.
T Consensus 1061 vivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1061 VIVLFECGELEA 1072 (1480)
T ss_pred HHHHHhccchHH
Confidence 888888888754
No 488
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=48.59 E-value=1.8e+02 Score=29.33 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=24.6
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAIN 406 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 406 (570)
+......|..+|..+++.+++.+|+..+.++-.
T Consensus 314 ~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 314 NNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp TT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 344556678889999999999999998887754
No 489
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=48.58 E-value=1.3e+02 Score=23.68 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=31.5
Q ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 387 ELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 387 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
.+..+|+-++--+.+....+....+|..+..+|.+|.+.|+..+|-+.+.+|-+
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 345566666666666666655555677777777777777777777777777654
No 490
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=48.17 E-value=45 Score=18.06 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=14.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVE 275 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~ 275 (570)
|..+-..+.+.|+++.|..+|+...+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445555556666666666555443
No 491
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=47.87 E-value=1.4e+02 Score=30.42 Aligned_cols=57 Identities=9% Similarity=-0.015 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q psy3014 412 PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYE 470 (570)
Q Consensus 412 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (570)
....+..|..+...|..+.|-.+|++.+..+|+ ..++..+.-+.+.|-...|...++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 42 SLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 334444444444555555555555555555544 334444444555554444444444
No 492
>KOG2758|consensus
Probab=47.67 E-value=2.3e+02 Score=26.20 Aligned_cols=192 Identities=12% Similarity=0.059 Sum_probs=91.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc--ccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3014 267 LAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN--RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344 (570)
Q Consensus 267 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 344 (570)
+..+.+-....|+..+..+..|...+..|+|..|..++-..... +|+.......|..+| .-.-..+|+-|.+.+.+.
T Consensus 115 l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlA-SEIL~qnWd~A~edL~rL 193 (432)
T KOG2758|consen 115 LQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLA-SEILTQNWDGALEDLTRL 193 (432)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHH-HHHHHhhHHHHHHHHHHH
Confidence 34444444556777777888888888888888777765544332 222212233333333 233456777777776665
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHH----HHHHHCCCHHHHHHHHHHHHhcC--------CCCH
Q psy3014 345 MSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERG----NELFKNGKYADAVKEYTEAINRN--------PDDP 412 (570)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~A~~~~~~al~~~--------p~~~ 412 (570)
-+.-.+.. ............ +.++--=++.++...+-.++-.. ..-|
T Consensus 194 re~IDs~~---------------------f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cP 252 (432)
T KOG2758|consen 194 REYIDSKS---------------------FSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCP 252 (432)
T ss_pred HHHHcccc---------------------cccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCH
Confidence 44211100 000000111100 11111111111111111111111 1234
Q ss_pred HHHHHHHHHHHHh-cChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 413 KYYSNRAACYTKL-AAFDLGLKDCETCLKLDPK-FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 413 ~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
..+..++.+-.-. .+...+++.+-+++....- +.+.....-.|++-.=+|++|...++++-+.-.++.
T Consensus 253 hllRYLatAvvtnk~~rr~~lkdlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl~nDf 322 (432)
T KOG2758|consen 253 HLLRYLATAVVTNKRRRRNRLKDLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVLVNDF 322 (432)
T ss_pred HHHHHHHHHhhcchHhhHHHHHHHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHHhcch
Confidence 5555555555443 5677778888887765321 122223334555666688888888877766544443
No 493
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=47.39 E-value=1.8e+02 Score=24.88 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAA 289 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 289 (570)
.....+..+-......|+++.|-++|--.+...+-+....-.+|.
T Consensus 39 ~Hl~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~ 83 (199)
T PF04090_consen 39 QHLRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGA 83 (199)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHH
Confidence 344455555556667788888888888888777666665545543
No 494
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=47.06 E-value=1.3e+02 Score=23.21 Aligned_cols=29 Identities=7% Similarity=0.173 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
.....+++..+...|+.+-.+++++-+-+
T Consensus 50 VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 50 VISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 44567889999999999988888877654
No 495
>KOG4279|consensus
Probab=46.11 E-value=2.9e+02 Score=29.09 Aligned_cols=110 Identities=18% Similarity=0.118 Sum_probs=61.5
Q ss_pred CChhhHHHHHHHHHHHH---------HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-hHHHHHHHHHHHhcC
Q psy3014 373 IDPVKAEEAKERGNELF---------KNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAA-FDLGLKDCETCLKLD 442 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~---------~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~ 442 (570)
..|-.++.+...|.+|- ..+..+.|+.+|+++++..|.... =.+++.++...|. ++...+.-.-.+.++
T Consensus 273 eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG~~Fens~Elq~IgmkLn 351 (1226)
T KOG4279|consen 273 EGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAGEHFENSLELQQIGMKLN 351 (1226)
T ss_pred cCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhhhhccchHHHHHHHHHHH
Confidence 34455566666666653 235567889999999999886432 2345555555553 444444333333322
Q ss_pred C--------CCHHHHHHHHHHH---HhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 443 P--------KFLKGWIRKGKIL---QGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 443 p--------~~~~~~~~l~~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
. .....|...|..+ .-.+++.+|+..-+...++.|-.-...
T Consensus 352 ~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLk 403 (1226)
T KOG4279|consen 352 SLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLK 403 (1226)
T ss_pred HHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHH
Confidence 1 0111222222222 235788899988888888887654333
No 496
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=45.68 E-value=2.6e+02 Score=28.30 Aligned_cols=78 Identities=12% Similarity=0.164 Sum_probs=43.7
Q ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-----CCCCHHHHHHHH
Q psy3014 382 KERGNELFKNG---KYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL-----DPKFLKGWIRKG 453 (570)
Q Consensus 382 ~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~ 453 (570)
..+-++++..| +|.-|+-.+-..-++.|.. .-..++..|.+++.. +..+...|..+|
T Consensus 261 q~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~---------------~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~g 325 (618)
T PF05053_consen 261 QDLLWLLYDMGHLARYPMALGNLADLEEIDPTP---------------GRPTPLELFNEAISSARTYYNNHHVYPYTYLG 325 (618)
T ss_dssp HHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--T---------------TS--HHHHHHHHHHHHHHHCTT--SHHHHHHH
T ss_pred HHHHHHHHhcCchhhCchhhhhhHhHHhhccCC---------------CCCCHHHHHHHHHHHHHHHhcCCccccceehh
Confidence 33445555544 4566666666666655531 233445555555543 334556677788
Q ss_pred HHHHhCCCHHHHHHHHHHHHh
Q psy3014 454 KILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~al~ 474 (570)
-.+++.+++.+|+..+-.+-.
T Consensus 326 g~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 326 GYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 888888898888888877643
No 497
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=45.65 E-value=38 Score=32.09 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 95 YKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 95 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
++.|++-++-.++..|++.......+.+...
T Consensus 130 FdaAlER~e~Gl~~~p~s~~L~l~~skIll~ 160 (404)
T PF12753_consen 130 FDAALERVELGLEKFPDSILLLLAKSKILLQ 160 (404)
T ss_dssp HHHHHHHHHHGGSSS--H-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcCCCchhHHHHHHHHHHH
Confidence 4667777777788888887776666666554
No 498
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=45.51 E-value=54 Score=18.26 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy3014 461 QQSKAIDAYEKALELDASNAEAVEGYR 487 (570)
Q Consensus 461 ~~~~A~~~~~~al~~~p~~~~~~~~l~ 487 (570)
+++.|...|++.+...|+ +..|..++
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 345566666666666554 44444444
No 499
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=45.40 E-value=48 Score=23.29 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=21.1
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 427 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
.|+.|....++++..+ ..|+.++|+.+|++++..
T Consensus 4 ~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 4 YYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHHH
Confidence 3555655555555543 447777777777777653
No 500
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=44.80 E-value=3.6e+02 Score=27.57 Aligned_cols=33 Identities=15% Similarity=-0.075 Sum_probs=26.5
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLD 41 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 41 (570)
+....+..+-..+....+|.+|..++...++.-
T Consensus 45 ~~~~r~l~ll~e~l~~h~W~~Aa~~~s~ylq~~ 77 (547)
T PF14929_consen 45 ENRRRCLRLLREALLQHQWQEAAGVMSSYLQGL 77 (547)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 456677788888888999999999988887753
Done!