Query psy3014
Match_columns 570
No_of_seqs 971 out of 2781
Neff 11.6
Searched_HMMs 29240
Date Fri Aug 16 23:17:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 2.3E-44 8E-49 349.1 37.0 378 15-495 3-388 (388)
2 3ieg_A DNAJ homolog subfamily 100.0 2.4E-39 8.3E-44 310.5 43.3 335 10-495 2-355 (359)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.3E-40 7.8E-45 321.0 31.9 355 4-461 26-388 (388)
4 2y4t_A DNAJ homolog subfamily 100.0 4E-39 1.4E-43 319.1 40.9 342 3-495 18-378 (450)
5 2gw1_A Mitochondrial precursor 100.0 1.1E-38 3.6E-43 321.8 34.3 409 8-498 3-467 (514)
6 3fp2_A TPR repeat-containing p 100.0 1E-37 3.5E-42 316.4 34.2 376 7-498 21-480 (537)
7 2xpi_A Anaphase-promoting comp 100.0 8.4E-37 2.9E-41 313.8 38.8 252 245-499 303-569 (597)
8 2xpi_A Anaphase-promoting comp 100.0 5.4E-37 1.8E-41 315.3 33.4 354 8-491 197-595 (597)
9 2gw1_A Mitochondrial precursor 100.0 2.4E-36 8.1E-41 304.6 25.6 350 10-489 38-492 (514)
10 3hym_B Cell division cycle pro 100.0 1.4E-34 4.8E-39 273.9 31.7 298 35-495 12-320 (330)
11 3hym_B Cell division cycle pro 100.0 1.3E-34 4.4E-39 274.1 30.9 306 4-463 15-322 (330)
12 4g1t_A Interferon-induced prot 100.0 3.9E-35 1.3E-39 292.2 26.1 373 8-487 48-471 (472)
13 2y4t_A DNAJ homolog subfamily 100.0 8E-34 2.7E-38 281.0 34.8 325 26-513 7-365 (450)
14 3ieg_A DNAJ homolog subfamily 100.0 5.6E-33 1.9E-37 266.1 36.5 307 44-513 2-342 (359)
15 3fp2_A TPR repeat-containing p 100.0 1.3E-33 4.3E-38 286.3 32.7 360 4-487 52-503 (537)
16 1fch_A Peroxisomal targeting s 100.0 1.2E-33 4.2E-38 271.8 24.6 292 20-475 34-359 (368)
17 1fch_A Peroxisomal targeting s 100.0 9E-33 3.1E-37 265.7 29.0 304 22-499 12-349 (368)
18 4eqf_A PEX5-related protein; a 100.0 7.5E-32 2.6E-36 258.9 23.2 280 31-473 47-354 (365)
19 4eqf_A PEX5-related protein; a 100.0 3.6E-31 1.2E-35 254.1 26.9 220 250-498 102-345 (365)
20 2h6f_A Protein farnesyltransfe 100.0 2.8E-31 9.6E-36 251.7 24.8 263 69-495 87-368 (382)
21 2h6f_A Protein farnesyltransfe 100.0 4.1E-31 1.4E-35 250.5 21.0 259 37-459 89-366 (382)
22 3cv0_A Peroxisome targeting si 100.0 8.7E-31 3E-35 247.4 22.9 107 9-115 19-125 (327)
23 3cv0_A Peroxisome targeting si 100.0 8E-31 2.7E-35 247.7 21.1 96 44-139 20-115 (327)
24 4g1t_A Interferon-induced prot 100.0 1.5E-29 5.3E-34 251.8 28.9 328 25-481 25-407 (472)
25 3uq3_A Heat shock protein STI1 100.0 1.6E-28 5.4E-33 223.4 33.0 246 244-490 2-257 (258)
26 2xm6_A Protein corresponding t 100.0 6.9E-28 2.3E-32 240.3 36.1 367 8-491 36-451 (490)
27 2pl2_A Hypothetical conserved 100.0 1.3E-28 4.5E-33 216.5 23.0 201 244-474 2-213 (217)
28 3u4t_A TPR repeat-containing p 100.0 2E-28 6.9E-33 224.6 25.1 183 283-494 76-269 (272)
29 3mkr_A Coatomer subunit epsilo 100.0 2.2E-27 7.7E-32 218.0 31.0 203 248-484 66-273 (291)
30 2ooe_A Cleavage stimulation fa 100.0 4E-27 1.4E-31 237.2 34.0 419 3-496 5-479 (530)
31 3u4t_A TPR repeat-containing p 100.0 3.6E-28 1.2E-32 222.9 24.0 255 10-425 2-268 (272)
32 3mkr_A Coatomer subunit epsilo 100.0 2.1E-27 7.3E-32 218.1 28.4 277 18-469 6-288 (291)
33 3uq3_A Heat shock protein STI1 100.0 4.6E-28 1.6E-32 220.3 23.8 102 8-110 2-110 (258)
34 3sf4_A G-protein-signaling mod 100.0 5.2E-29 1.8E-33 242.9 16.7 307 8-462 6-363 (406)
35 2pl2_A Hypothetical conserved 100.0 3.5E-28 1.2E-32 213.8 19.8 202 7-346 1-213 (217)
36 3sf4_A G-protein-signaling mod 100.0 1.3E-27 4.4E-32 233.0 22.2 306 44-497 8-364 (406)
37 2q7f_A YRRB protein; TPR, prot 99.9 2.2E-26 7.5E-31 207.1 22.6 221 245-494 21-241 (243)
38 2xm6_A Protein corresponding t 99.9 7.4E-25 2.5E-29 218.4 35.1 357 9-483 73-475 (490)
39 3e4b_A ALGK; tetratricopeptide 99.9 1.1E-25 3.8E-30 220.6 28.0 104 15-125 7-118 (452)
40 3ro2_A PINS homolog, G-protein 99.9 1.3E-26 4.5E-31 219.5 20.6 287 9-443 3-334 (338)
41 4a1s_A PINS, partner of inscut 99.9 1E-26 3.5E-31 227.0 20.1 284 8-479 45-376 (411)
42 4a1s_A PINS, partner of inscut 99.9 1.5E-26 5.1E-31 225.8 20.8 227 253-499 92-362 (411)
43 2ho1_A Type 4 fimbrial biogene 99.9 2E-24 7E-29 195.4 29.9 217 243-486 32-249 (252)
44 2vq2_A PILW, putative fimbrial 99.9 2.7E-24 9.2E-29 190.9 30.2 218 243-487 4-223 (225)
45 3vtx_A MAMA; tetratricopeptide 99.9 3.2E-25 1.1E-29 190.0 22.9 174 279-481 3-176 (184)
46 2ooe_A Cleavage stimulation fa 99.9 1.7E-24 5.7E-29 218.1 31.6 397 4-479 39-496 (530)
47 3ro2_A PINS homolog, G-protein 99.9 9.5E-26 3.2E-30 213.7 20.2 286 46-479 6-336 (338)
48 1xnf_A Lipoprotein NLPI; TPR, 99.9 9E-26 3.1E-30 207.3 18.0 183 253-469 83-269 (275)
49 3vtx_A MAMA; tetratricopeptide 99.9 1E-24 3.5E-29 186.8 22.2 174 245-447 3-176 (184)
50 1xnf_A Lipoprotein NLPI; TPR, 99.9 4.4E-25 1.5E-29 202.7 21.1 255 17-435 11-269 (275)
51 1ouv_A Conserved hypothetical 99.9 2.9E-23 1E-27 190.1 31.5 195 250-483 41-259 (273)
52 2q7f_A YRRB protein; TPR, prot 99.9 2.6E-24 8.9E-29 193.5 22.2 178 253-459 63-240 (243)
53 4abn_A Tetratricopeptide repea 99.9 1.7E-24 6E-29 213.5 22.4 211 260-500 81-312 (474)
54 1ouv_A Conserved hypothetical 99.9 3.1E-23 1.1E-27 189.9 28.4 163 250-449 77-259 (273)
55 4i17_A Hypothetical protein; T 99.9 5.7E-24 1.9E-28 189.1 22.5 211 246-492 6-226 (228)
56 3ulq_A Response regulator aspa 99.9 7.9E-24 2.7E-28 204.1 24.8 320 8-478 9-371 (383)
57 4abn_A Tetratricopeptide repea 99.9 3.8E-24 1.3E-28 211.1 22.8 242 7-403 50-317 (474)
58 2ond_A Cleavage stimulation fa 99.9 1.4E-23 4.7E-28 195.5 25.4 245 8-412 5-275 (308)
59 3e4b_A ALGK; tetratricopeptide 99.9 9E-25 3.1E-29 214.1 16.8 338 9-494 33-404 (452)
60 2ho1_A Type 4 fimbrial biogene 99.9 6.3E-23 2.1E-27 185.6 26.7 172 251-451 75-248 (252)
61 2ond_A Cleavage stimulation fa 99.9 9.1E-23 3.1E-27 189.9 27.7 191 263-482 80-277 (308)
62 2vq2_A PILW, putative fimbrial 99.9 1.8E-22 6.1E-27 179.1 27.4 172 252-452 47-222 (225)
63 4i17_A Hypothetical protein; T 99.9 6.9E-23 2.4E-27 182.1 22.8 189 241-458 35-226 (228)
64 4gyw_A UDP-N-acetylglucosamine 99.9 1.4E-23 4.9E-28 214.3 19.4 173 243-444 5-177 (723)
65 3qky_A Outer membrane assembly 99.9 5.2E-23 1.8E-27 186.9 19.6 215 7-338 11-252 (261)
66 4gyw_A UDP-N-acetylglucosamine 99.9 6.3E-23 2.1E-27 209.6 20.7 176 276-480 4-179 (723)
67 3ulq_A Response regulator aspa 99.9 7.8E-23 2.7E-27 197.1 19.1 240 14-408 106-369 (383)
68 3qky_A Outer membrane assembly 99.9 3.8E-22 1.3E-26 181.3 22.1 198 275-495 9-247 (261)
69 3q15_A PSP28, response regulat 99.9 1.8E-21 6.2E-26 187.1 27.8 320 8-477 9-367 (378)
70 3nf1_A KLC 1, kinesin light ch 99.9 8E-23 2.7E-27 191.2 17.1 215 245-478 67-310 (311)
71 1hz4_A MALT regulatory protein 99.9 1.1E-20 3.7E-25 181.6 31.7 323 3-480 6-354 (373)
72 3nf1_A KLC 1, kinesin light ch 99.9 8.2E-23 2.8E-27 191.1 15.3 182 6-313 22-227 (311)
73 3dra_A Protein farnesyltransfe 99.9 5.3E-21 1.8E-25 173.6 24.9 250 11-420 32-301 (306)
74 1xi4_A Clathrin heavy chain; a 99.9 3.3E-20 1.1E-24 192.5 31.3 315 17-501 1055-1376(1630)
75 3dra_A Protein farnesyltransfe 99.9 1.6E-20 5.6E-25 170.4 25.5 199 262-489 84-302 (306)
76 4ga2_A E3 SUMO-protein ligase 99.9 2.2E-22 7.6E-27 164.9 12.1 147 323-495 2-149 (150)
77 1qqe_A Vesicular transport pro 99.9 6.8E-21 2.3E-25 175.6 21.7 226 245-490 35-284 (292)
78 4gco_A Protein STI-1; structur 99.9 4.3E-21 1.5E-25 151.7 16.7 121 370-490 5-125 (126)
79 2pzi_A Probable serine/threoni 99.9 1.2E-21 4.2E-26 201.7 17.2 184 245-461 392-583 (681)
80 3q15_A PSP28, response regulat 99.9 7.5E-21 2.6E-25 182.8 21.2 241 12-407 102-365 (378)
81 1qqe_A Vesicular transport pro 99.9 6.4E-21 2.2E-25 175.7 19.2 193 245-456 75-284 (292)
82 1xi4_A Clathrin heavy chain; a 99.9 1.9E-18 6.6E-23 179.6 38.9 309 23-494 1088-1415(1630)
83 3urz_A Uncharacterized protein 99.9 1.1E-20 3.9E-25 164.5 19.2 195 246-489 3-199 (208)
84 1hz4_A MALT regulatory protein 99.9 4.7E-20 1.6E-24 177.1 25.4 283 46-477 15-324 (373)
85 2yhc_A BAMD, UPF0169 lipoprote 99.9 2.8E-20 9.5E-25 164.4 21.3 188 10-314 3-217 (225)
86 3as5_A MAMA; tetratricopeptide 99.9 2.3E-20 8E-25 159.8 19.2 172 281-481 8-179 (186)
87 4ga2_A E3 SUMO-protein ligase 99.9 3.1E-21 1.1E-25 158.1 12.9 147 286-461 2-149 (150)
88 1b89_A Protein (clathrin heavy 99.9 1.2E-21 4E-26 182.9 10.7 309 20-491 12-339 (449)
89 2pzi_A Probable serine/threoni 99.9 4.1E-21 1.4E-25 197.8 15.2 188 275-495 388-583 (681)
90 3as5_A MAMA; tetratricopeptide 99.9 5.9E-20 2E-24 157.3 19.8 174 245-447 6-179 (186)
91 3urz_A Uncharacterized protein 99.8 3.6E-20 1.2E-24 161.3 17.4 143 238-410 29-189 (208)
92 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.8E-19 9.7E-24 157.9 22.4 194 246-481 3-219 (225)
93 3edt_B KLC 2, kinesin light ch 99.8 1.3E-19 4.3E-24 166.8 18.5 164 259-441 13-198 (283)
94 4gco_A Protein STI-1; structur 99.8 3.9E-20 1.3E-24 146.1 12.7 117 7-123 9-125 (126)
95 3dss_A Geranylgeranyl transfer 99.8 3.9E-18 1.3E-22 155.3 26.9 177 18-331 36-240 (331)
96 3gyz_A Chaperone protein IPGC; 99.8 2.3E-19 7.9E-24 145.7 15.5 128 353-480 11-138 (151)
97 3edt_B KLC 2, kinesin light ch 99.8 1.2E-19 4.1E-24 166.9 15.2 234 22-407 12-281 (283)
98 3dss_A Geranylgeranyl transfer 99.8 1.7E-17 5.9E-22 151.1 28.4 207 258-493 40-285 (331)
99 4f3v_A ESX-1 secretion system 99.8 3.9E-19 1.3E-23 156.9 15.6 225 245-498 5-259 (282)
100 4e6h_A MRNA 3'-END-processing 99.8 6.8E-17 2.3E-21 163.1 33.8 451 3-495 58-556 (679)
101 1b89_A Protein (clathrin heavy 99.8 2.3E-20 7.8E-25 174.2 7.7 309 9-477 30-359 (449)
102 3q7a_A Farnesyltransferase alp 99.8 1.4E-17 4.7E-22 152.2 25.1 207 254-489 95-346 (349)
103 2r5s_A Uncharacterized protein 99.8 3.1E-19 1E-23 151.0 13.3 163 282-474 7-172 (176)
104 2r5s_A Uncharacterized protein 99.8 4.9E-19 1.7E-23 149.8 13.9 171 41-346 2-172 (176)
105 3q7a_A Farnesyltransferase alp 99.8 2.2E-17 7.4E-22 150.9 23.5 259 13-420 56-345 (349)
106 3qou_A Protein YBBN; thioredox 99.8 5.6E-18 1.9E-22 155.3 18.9 169 277-474 113-283 (287)
107 2vgx_A Chaperone SYCD; alterna 99.8 7.6E-18 2.6E-22 137.3 16.5 127 367-493 10-136 (148)
108 3qou_A Protein YBBN; thioredox 99.8 7.2E-18 2.5E-22 154.6 17.8 168 244-440 114-283 (287)
109 2vsy_A XCC0866; transferase, g 99.8 1.1E-17 3.7E-22 169.8 20.8 165 260-453 2-169 (568)
110 2ifu_A Gamma-SNAP; membrane fu 99.8 8.8E-18 3E-22 156.0 18.3 106 318-445 116-227 (307)
111 2vsy_A XCC0866; transferase, g 99.8 7.4E-18 2.5E-22 171.0 19.1 165 294-487 2-169 (568)
112 3rjv_A Putative SEL1 repeat pr 99.8 6.1E-17 2.1E-21 141.1 21.3 187 264-489 3-209 (212)
113 2xcb_A PCRH, regulatory protei 99.8 1.1E-17 3.8E-22 135.7 14.2 129 366-494 6-134 (142)
114 1p5q_A FKBP52, FK506-binding p 99.8 3.3E-19 1.1E-23 167.3 5.8 200 23-346 77-293 (336)
115 2ifu_A Gamma-SNAP; membrane fu 99.8 5E-17 1.7E-21 150.9 20.4 199 260-481 4-229 (307)
116 4f3v_A ESX-1 secretion system 99.8 1.7E-17 6E-22 146.4 16.3 206 6-349 2-239 (282)
117 3upv_A Heat shock protein STI1 99.8 3.5E-17 1.2E-21 129.9 16.6 119 375-493 1-125 (126)
118 3gyz_A Chaperone protein IPGC; 99.8 6.1E-18 2.1E-22 137.3 11.5 118 300-446 21-138 (151)
119 1p5q_A FKBP52, FK506-binding p 99.7 1.4E-19 4.8E-24 169.8 0.6 201 259-475 77-294 (336)
120 2c2l_A CHIP, carboxy terminus 99.7 4.8E-18 1.7E-22 155.1 10.7 104 9-112 2-105 (281)
121 2c2l_A CHIP, carboxy terminus 99.7 1.6E-17 5.3E-22 151.8 12.0 198 246-477 3-201 (281)
122 1dce_A Protein (RAB geranylger 99.7 5.5E-17 1.9E-21 161.8 15.9 193 258-479 39-271 (567)
123 3mv2_B Coatomer subunit epsilo 99.7 1E-15 3.5E-20 137.0 22.3 186 266-485 85-292 (310)
124 3upv_A Heat shock protein STI1 99.7 4.1E-17 1.4E-21 129.4 11.6 118 8-125 1-124 (126)
125 4e6h_A MRNA 3'-END-processing 99.7 1.2E-14 4.1E-19 146.8 31.9 408 5-484 94-579 (679)
126 2fo7_A Synthetic consensus TPR 99.7 8E-16 2.7E-20 123.6 18.1 135 319-479 2-136 (136)
127 4gcn_A Protein STI-1; structur 99.7 3.1E-16 1.1E-20 124.0 14.8 114 375-489 5-125 (127)
128 3sz7_A HSC70 cochaperone (SGT) 99.7 4.2E-16 1.4E-20 130.0 15.6 122 373-494 6-129 (164)
129 2hr2_A Hypothetical protein; a 99.7 1.8E-17 6E-22 132.0 6.5 117 8-124 8-147 (159)
130 2hr2_A Hypothetical protein; a 99.7 7.4E-17 2.5E-21 128.4 9.8 118 377-494 10-150 (159)
131 2vgx_A Chaperone SYCD; alterna 99.7 1.9E-16 6.4E-21 129.0 12.3 118 302-448 8-125 (148)
132 2xcb_A PCRH, regulatory protei 99.7 1.5E-16 5.3E-21 128.9 10.8 120 4-123 11-130 (142)
133 2lni_A Stress-induced-phosphop 99.7 9.6E-16 3.3E-20 122.8 15.2 123 373-495 11-133 (133)
134 3rjv_A Putative SEL1 repeat pr 99.7 5.9E-15 2E-19 128.5 21.2 173 245-454 16-208 (212)
135 2vyi_A SGTA protein; chaperone 99.7 2.4E-15 8.2E-20 120.1 17.3 124 373-496 7-130 (131)
136 1hh8_A P67PHOX, NCF-2, neutrop 99.7 3.4E-15 1.2E-19 130.7 19.7 137 318-483 6-158 (213)
137 4gcn_A Protein STI-1; structur 99.7 1.9E-15 6.4E-20 119.5 15.8 117 243-359 4-124 (127)
138 2fbn_A 70 kDa peptidylprolyl i 99.7 2.1E-16 7.3E-21 136.4 10.9 124 373-496 33-172 (198)
139 3rkv_A Putative peptidylprolyl 99.7 1.1E-15 3.7E-20 127.2 14.6 120 376-495 9-147 (162)
140 2e2e_A Formate-dependent nitri 99.7 7.5E-16 2.6E-20 130.4 13.6 132 330-487 22-156 (177)
141 2fo7_A Synthetic consensus TPR 99.7 6.4E-15 2.2E-19 118.3 18.4 132 249-409 3-134 (136)
142 1dce_A Protein (RAB geranylger 99.7 1.5E-15 5.3E-20 151.5 17.7 171 296-495 44-241 (567)
143 2qfc_A PLCR protein; TPR, HTH, 99.7 6.5E-15 2.2E-19 135.7 20.0 178 279-476 73-267 (293)
144 3q49_B STIP1 homology and U bo 99.7 1.7E-15 5.9E-20 122.1 14.0 123 373-495 4-131 (137)
145 2fbn_A 70 kDa peptidylprolyl i 99.7 2.6E-16 8.9E-21 135.9 9.4 177 283-474 6-185 (198)
146 3sz7_A HSC70 cochaperone (SGT) 99.7 4.3E-16 1.5E-20 129.9 10.2 120 6-125 6-127 (164)
147 3u3w_A Transcriptional activat 99.6 1.3E-14 4.4E-19 133.7 20.3 178 245-441 73-266 (293)
148 3mv2_B Coatomer subunit epsilo 99.6 1.7E-14 6E-19 129.1 20.1 169 248-449 101-290 (310)
149 3rkv_A Putative peptidylprolyl 99.6 7.6E-16 2.6E-20 128.1 10.7 122 7-128 7-147 (162)
150 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 9.3E-17 3.2E-21 157.2 5.8 197 26-346 201-414 (457)
151 1elw_A TPR1-domain of HOP; HOP 99.6 1.1E-14 3.7E-19 113.8 16.6 115 377-491 3-117 (118)
152 1hxi_A PEX5, peroxisome target 99.6 1.7E-15 5.9E-20 118.4 11.8 103 379-481 18-120 (121)
153 1na0_A Designed protein CTPR3; 99.6 1.6E-14 5.6E-19 114.1 17.5 121 374-494 4-125 (125)
154 2qfc_A PLCR protein; TPR, HTH, 99.6 3.5E-14 1.2E-18 130.8 22.2 179 243-441 71-266 (293)
155 1a17_A Serine/threonine protei 99.6 1.2E-14 4E-19 121.5 17.1 132 318-475 13-146 (166)
156 1hxi_A PEX5, peroxisome target 99.6 6.7E-16 2.3E-20 120.8 8.8 105 10-114 16-120 (121)
157 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.6E-14 5.6E-19 126.3 18.7 96 245-346 4-99 (213)
158 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 4.7E-16 1.6E-20 152.2 8.5 127 373-499 263-404 (457)
159 3u3w_A Transcriptional activat 99.6 1.9E-14 6.5E-19 132.6 18.6 173 284-476 78-267 (293)
160 2e2e_A Formate-dependent nitri 99.6 7.7E-15 2.6E-19 124.1 13.0 128 259-415 22-152 (177)
161 1a17_A Serine/threonine protei 99.6 4.2E-14 1.4E-18 118.1 17.4 133 244-405 10-144 (166)
162 2dba_A Smooth muscle cell asso 99.6 1.6E-14 5.3E-19 118.2 14.2 120 373-492 23-145 (148)
163 1elw_A TPR1-domain of HOP; HOP 99.6 9.9E-15 3.4E-19 114.0 12.5 114 10-123 3-116 (118)
164 2lni_A Stress-induced-phosphop 99.6 2.2E-14 7.6E-19 114.8 14.5 119 317-461 15-133 (133)
165 4b4t_Q 26S proteasome regulato 99.6 1.6E-13 5.4E-18 134.5 23.6 302 11-478 4-330 (434)
166 2vyi_A SGTA protein; chaperone 99.6 2.2E-14 7.5E-19 114.4 14.2 119 318-462 12-130 (131)
167 3q49_B STIP1 homology and U bo 99.6 3.8E-15 1.3E-19 120.0 9.4 119 7-125 5-128 (137)
168 2xev_A YBGF; tetratricopeptide 99.6 4.1E-14 1.4E-18 112.6 15.1 115 380-494 4-124 (129)
169 1elr_A TPR2A-domain of HOP; HO 99.6 5E-14 1.7E-18 112.3 15.2 120 375-495 1-127 (131)
170 2uy1_A Cleavage stimulation fa 99.6 1.6E-11 5.5E-16 120.7 33.7 372 8-495 11-399 (493)
171 1zu2_A Mitochondrial import re 99.6 1.1E-14 3.9E-19 115.5 9.2 99 391-489 15-134 (158)
172 2kck_A TPR repeat; tetratricop 99.6 2.7E-14 9.2E-19 110.3 11.3 107 374-480 2-111 (112)
173 2xev_A YBGF; tetratricopeptide 99.6 2.4E-14 8.2E-19 113.9 11.2 114 12-125 3-122 (129)
174 2if4_A ATFKBP42; FKBP-like, al 99.5 4.6E-15 1.6E-19 139.1 7.4 118 5-122 173-307 (338)
175 2dba_A Smooth muscle cell asso 99.5 3E-14 1E-18 116.4 10.9 118 7-124 24-144 (148)
176 3gw4_A Uncharacterized protein 99.5 1.2E-13 4.1E-18 119.6 14.7 163 292-477 3-178 (203)
177 1na0_A Designed protein CTPR3; 99.5 4.9E-13 1.7E-17 105.4 16.7 116 318-459 9-124 (125)
178 3gw4_A Uncharacterized protein 99.5 2.7E-13 9.1E-18 117.5 15.8 166 258-443 3-178 (203)
179 4b4t_Q 26S proteasome regulato 99.5 5.8E-13 2E-17 130.4 19.9 210 247-476 4-246 (434)
180 1ihg_A Cyclophilin 40; ppiase 99.5 1.3E-13 4.6E-18 130.3 14.5 123 377-499 222-360 (370)
181 1zu2_A Mitochondrial import re 99.5 1.1E-13 3.9E-18 109.8 11.2 112 355-487 13-145 (158)
182 2if4_A ATFKBP42; FKBP-like, al 99.5 3.8E-14 1.3E-18 132.8 9.6 155 318-481 179-334 (338)
183 1elr_A TPR2A-domain of HOP; HO 99.5 1.1E-13 3.8E-18 110.3 10.8 116 9-125 2-124 (131)
184 3k9i_A BH0479 protein; putativ 99.5 4.5E-14 1.5E-18 109.9 8.0 102 390-491 2-106 (117)
185 1wao_1 Serine/threonine protei 99.5 1.1E-14 3.7E-19 143.0 4.6 137 318-480 6-155 (477)
186 2kck_A TPR repeat; tetratricop 99.5 4E-14 1.4E-18 109.4 6.9 106 8-113 3-111 (112)
187 1ihg_A Cyclophilin 40; ppiase 99.5 1.6E-13 5.6E-18 129.7 11.8 123 4-126 216-354 (370)
188 1wao_1 Serine/threonine protei 99.4 3.1E-14 1.1E-18 139.8 4.1 138 245-411 4-154 (477)
189 3k9i_A BH0479 protein; putativ 99.4 3.8E-13 1.3E-17 104.6 9.3 97 331-453 3-102 (117)
190 3ro3_A PINS homolog, G-protein 99.4 1.5E-12 5.1E-17 108.1 12.6 141 318-478 9-161 (164)
191 3ro3_A PINS homolog, G-protein 99.4 2E-11 6.8E-16 101.2 16.1 144 244-407 6-158 (164)
192 2l6j_A TPR repeat-containing p 99.4 2.3E-13 8E-18 104.8 3.6 96 10-105 3-104 (111)
193 2kat_A Uncharacterized protein 99.4 4.4E-12 1.5E-16 98.2 10.9 101 395-495 2-104 (115)
194 2uy1_A Cleavage stimulation fa 99.3 6.7E-10 2.3E-14 109.1 27.6 133 363-497 198-371 (493)
195 2l6j_A TPR repeat-containing p 99.3 1.4E-12 4.9E-17 100.3 5.0 93 378-470 4-102 (111)
196 1na3_A Designed protein CTPR2; 99.3 2.4E-11 8.2E-16 89.5 11.3 82 412-493 9-90 (91)
197 1na3_A Designed protein CTPR2; 99.3 6.2E-11 2.1E-15 87.2 11.8 87 374-460 5-91 (91)
198 3ma5_A Tetratricopeptide repea 99.2 5.5E-11 1.9E-15 89.1 10.8 89 407-495 2-92 (100)
199 2kc7_A BFR218_protein; tetratr 99.2 3.2E-11 1.1E-15 90.4 7.0 91 382-480 4-95 (99)
200 2kc7_A BFR218_protein; tetratr 99.2 1.1E-11 3.7E-16 93.0 4.3 92 14-113 3-95 (99)
201 2kat_A Uncharacterized protein 99.2 1.8E-10 6.1E-15 89.0 11.2 95 363-457 4-100 (115)
202 1klx_A Cysteine rich protein B 99.1 2.2E-09 7.6E-14 85.5 15.2 117 361-487 12-136 (138)
203 3ma5_A Tetratricopeptide repea 99.1 3.9E-10 1.3E-14 84.4 8.7 73 373-445 2-74 (100)
204 3u64_A Protein TP_0956; tetrat 99.1 2.7E-08 9.3E-13 86.6 19.8 107 373-479 147-273 (301)
205 3n71_A Histone lysine methyltr 99.1 5.2E-09 1.8E-13 101.8 17.3 135 287-440 315-463 (490)
206 3n71_A Histone lysine methyltr 99.0 6.7E-09 2.3E-13 101.0 16.7 142 247-407 309-464 (490)
207 1klx_A Cysteine rich protein B 99.0 7.4E-09 2.5E-13 82.5 14.1 63 377-441 56-126 (138)
208 1pc2_A Mitochondria fission pr 99.0 5.1E-09 1.7E-13 82.1 11.6 101 394-494 14-119 (152)
209 3ly7_A Transcriptional activat 99.0 1.9E-08 6.5E-13 91.7 16.6 155 272-480 185-344 (372)
210 3bee_A Putative YFRE protein; 99.0 1.4E-08 4.6E-13 73.9 12.4 72 408-479 2-76 (93)
211 3ly7_A Transcriptional activat 99.0 2.4E-08 8.1E-13 91.1 16.3 151 309-511 188-344 (372)
212 3u64_A Protein TP_0956; tetrat 98.9 1.2E-07 4.1E-12 82.6 17.8 79 367-445 186-273 (301)
213 3bee_A Putative YFRE protein; 98.8 5.4E-08 1.9E-12 70.6 10.4 73 374-446 2-77 (93)
214 1pc2_A Mitochondria fission pr 98.8 5.7E-08 2E-12 76.1 10.9 96 360-455 14-114 (152)
215 2v5f_A Prolyl 4-hydroxylase su 98.8 1E-07 3.6E-12 71.4 11.8 78 412-489 5-89 (104)
216 2llw_A Heat shock protein STI1 98.7 2E-08 7E-13 66.4 5.6 65 494-558 6-70 (71)
217 2v5f_A Prolyl 4-hydroxylase su 98.7 2.1E-07 7.1E-12 69.7 11.0 77 377-453 4-87 (104)
218 3qww_A SET and MYND domain-con 98.6 1.5E-07 5E-12 90.1 11.5 97 389-485 309-426 (433)
219 3qww_A SET and MYND domain-con 98.6 6.4E-08 2.2E-12 92.5 8.8 107 11-117 298-425 (433)
220 3qwp_A SET and MYND domain-con 98.6 2.3E-07 7.7E-12 89.0 10.9 109 385-493 294-426 (429)
221 3qwp_A SET and MYND domain-con 98.5 1.7E-06 5.7E-11 83.0 15.9 118 289-425 295-426 (429)
222 1nzn_A CGI-135 protein, fissio 98.5 1.3E-06 4.3E-11 65.8 11.5 100 394-493 17-121 (126)
223 1nzn_A CGI-135 protein, fissio 98.3 5.5E-06 1.9E-10 62.3 9.4 99 25-123 15-118 (126)
224 4g26_A Pentatricopeptide repea 98.2 0.00028 9.5E-09 69.3 23.7 167 250-445 29-210 (501)
225 4h7y_A Dual specificity protei 98.2 4.4E-05 1.5E-09 58.6 13.4 112 373-485 8-133 (161)
226 4g26_A Pentatricopeptide repea 98.2 0.00016 5.5E-09 70.9 21.5 175 283-488 28-218 (501)
227 2lnm_A Protein TIC 40, chlorop 98.2 4.1E-06 1.4E-10 54.4 5.9 54 498-551 2-55 (62)
228 1y8m_A FIS1; mitochondria, unk 98.0 0.00035 1.2E-08 53.3 14.1 85 409-493 36-124 (144)
229 3ffl_A Anaphase-promoting comp 98.0 8.8E-05 3E-09 58.4 10.9 111 246-356 19-160 (167)
230 4h7y_A Dual specificity protei 97.9 0.00022 7.5E-09 54.8 12.2 112 275-413 7-129 (161)
231 3ffl_A Anaphase-promoting comp 97.9 5.5E-05 1.9E-09 59.6 9.2 111 12-123 21-165 (167)
232 3o48_A Mitochondria fission 1 97.9 0.00011 3.9E-09 55.2 10.4 83 411-493 39-125 (134)
233 3o48_A Mitochondria fission 1 97.8 0.00077 2.6E-08 50.8 12.4 80 376-455 38-121 (134)
234 1y8m_A FIS1; mitochondria, unk 97.7 0.0013 4.5E-08 50.2 12.9 81 375-455 36-120 (144)
235 2llv_A Heat shock protein STI1 97.6 3.2E-05 1.1E-09 51.7 2.4 54 501-554 16-70 (71)
236 3kae_A CDC27, possible protein 97.5 0.017 5.8E-07 45.1 16.7 199 259-479 14-241 (242)
237 3txn_A 26S proteasome regulato 97.1 0.17 5.9E-06 47.1 26.6 123 285-427 103-235 (394)
238 3kae_A CDC27, possible protein 97.0 0.025 8.7E-07 44.2 12.8 105 374-483 29-151 (242)
239 4gns_B Protein CSD3, chitin bi 96.9 0.016 5.4E-07 58.9 14.4 126 294-438 261-397 (754)
240 4gns_B Protein CSD3, chitin bi 96.7 0.012 4.1E-07 59.8 12.0 80 393-472 300-397 (754)
241 4b4t_P 26S proteasome regulato 96.4 0.25 8.6E-06 47.4 18.8 102 245-346 135-246 (445)
242 3mkq_A Coatomer beta'-subunit; 96.3 0.47 1.6E-05 49.9 22.3 178 256-494 608-797 (814)
243 3txn_A 26S proteasome regulato 96.3 0.71 2.4E-05 43.0 25.8 97 251-347 103-210 (394)
244 2ff4_A Probable regulatory pro 96.2 0.04 1.4E-06 51.9 12.0 99 9-107 113-233 (388)
245 4b4t_P 26S proteasome regulato 96.2 0.89 3.1E-05 43.5 21.6 199 260-475 29-247 (445)
246 1zbp_A Hypothetical protein VP 96.2 0.16 5.4E-06 43.9 14.1 129 255-411 5-133 (273)
247 1zbp_A Hypothetical protein VP 96.1 0.26 8.8E-06 42.5 15.0 64 53-116 5-68 (273)
248 3mkq_B Coatomer subunit alpha; 95.9 0.46 1.6E-05 38.2 14.8 45 258-307 16-60 (177)
249 3mkq_B Coatomer subunit alpha; 95.8 0.35 1.2E-05 38.9 13.5 57 279-346 6-62 (177)
250 3mkq_A Coatomer beta'-subunit; 95.6 1.1 3.7E-05 47.1 21.2 166 251-464 633-801 (814)
251 2ff4_A Probable regulatory pro 95.6 0.27 9.3E-06 46.2 14.4 92 383-474 120-233 (388)
252 4b4t_S RPN3, 26S proteasome re 95.5 0.62 2.1E-05 44.7 16.4 203 251-481 140-379 (523)
253 1ya0_A SMG-7 transcript varian 95.5 0.098 3.4E-06 50.5 11.1 80 379-458 153-232 (497)
254 4b4t_R RPN7, 26S proteasome re 95.4 0.057 1.9E-06 51.6 9.4 109 280-409 130-239 (429)
255 4b4t_R RPN7, 26S proteasome re 95.4 0.13 4.5E-06 49.1 11.8 103 375-477 128-239 (429)
256 4b4t_S RPN3, 26S proteasome re 95.4 0.065 2.2E-06 51.3 9.3 124 373-498 176-329 (523)
257 1ya0_A SMG-7 transcript varian 95.2 0.12 4E-06 50.1 10.8 65 359-423 167-231 (497)
258 1qsa_A Protein (soluble lytic 95.1 3.1 0.00011 41.6 35.3 107 389-497 296-430 (618)
259 2llv_A Heat shock protein STI1 94.3 0.013 4.3E-07 39.1 1.0 65 135-199 5-70 (71)
260 4fhn_B Nucleoporin NUP120; pro 94.1 2.8 9.5E-05 45.8 19.4 149 253-428 818-987 (1139)
261 1qsa_A Protein (soluble lytic 94.0 5.5 0.00019 39.8 30.9 187 252-470 219-437 (618)
262 4ady_A RPN2, 26S proteasome re 93.6 8 0.00027 40.4 20.9 208 249-486 492-710 (963)
263 4fhn_B Nucleoporin NUP120; pro 93.6 1.5 5.1E-05 47.9 16.2 86 247-336 899-989 (1139)
264 3spa_A Mtrpol, DNA-directed RN 93.2 1.7 5.9E-05 45.6 14.6 105 245-353 125-236 (1134)
265 3lvg_A Clathrin heavy chain 1; 93.2 1.7E-05 5.9E-10 73.7 -19.3 224 43-424 52-275 (624)
266 3spa_A Mtrpol, DNA-directed RN 93.1 1.2 4.2E-05 46.6 13.4 101 375-476 124-231 (1134)
267 2wpv_A GET4, UPF0363 protein Y 87.8 15 0.0005 32.9 20.0 29 374-402 130-158 (312)
268 2lnm_A Protein TIC 40, chlorop 85.0 0.43 1.5E-05 30.7 1.9 55 144-198 3-57 (62)
269 4gq2_M Nucleoporin NUP120; bet 81.8 13 0.00045 39.5 12.6 95 384-482 816-934 (950)
270 2w2u_A Hypothetical P60 katani 79.9 3.9 0.00013 28.0 5.2 34 7-40 15-48 (83)
271 3t5v_B Nuclear mRNA export pro 79.3 7.1 0.00024 37.1 8.6 62 418-479 182-254 (455)
272 3lpz_A GET4 (YOR164C homolog); 78.2 39 0.0013 30.5 26.6 110 291-401 45-159 (336)
273 3ax2_A Mitochondrial import re 77.7 8.7 0.0003 25.4 6.1 37 450-486 21-57 (73)
274 1wy6_A Hypothetical protein ST 74.0 18 0.00062 27.5 7.6 51 259-309 103-153 (172)
275 2v6y_A AAA family ATPase, P60 73.1 6.4 0.00022 27.0 4.8 34 7-40 7-40 (83)
276 4a5x_A MITD1, MIT domain-conta 72.9 5.9 0.0002 27.4 4.6 33 8-40 13-45 (86)
277 2vkj_A TM1634; membrane protei 72.5 7.9 0.00027 26.3 4.8 33 9-41 51-83 (106)
278 4gq2_M Nucleoporin NUP120; bet 70.6 1.2E+02 0.004 32.4 17.0 55 49-107 814-868 (950)
279 3lvg_A Clathrin heavy chain 1; 70.2 0.21 7.1E-06 47.2 -4.1 105 13-125 146-275 (624)
280 4ady_A RPN2, 26S proteasome re 70.2 1.1E+02 0.0039 32.1 28.9 44 47-92 232-275 (963)
281 3ax2_A Mitochondrial import re 70.2 15 0.00051 24.3 5.8 34 250-283 20-53 (73)
282 1wy6_A Hypothetical protein ST 70.2 34 0.0012 26.1 12.8 55 387-441 100-154 (172)
283 1wfd_A Hypothetical protein 15 67.0 9 0.00031 26.9 4.6 32 8-39 12-43 (93)
284 2crb_A Nuclear receptor bindin 65.8 11 0.00038 26.0 4.5 30 9-38 13-42 (97)
285 2v6x_A Vacuolar protein sortin 64.6 11 0.00037 26.0 4.6 32 8-39 10-41 (85)
286 3t5x_A PCI domain-containing p 64.4 13 0.00044 30.9 5.9 40 6-45 9-48 (203)
287 2crb_A Nuclear receptor bindin 61.7 15 0.00053 25.3 4.6 26 448-473 17-42 (97)
288 1om2_A Protein (mitochondrial 60.0 15 0.00052 25.7 4.6 34 450-483 24-57 (95)
289 2cpt_A SKD1 protein, vacuolar 59.9 13 0.00045 27.4 4.5 30 9-38 16-45 (117)
290 2rpa_A Katanin P60 ATPase-cont 59.6 12 0.00041 25.1 3.9 30 11-40 12-41 (78)
291 2ijq_A Hypothetical protein; s 59.5 62 0.0021 25.4 9.1 60 381-440 35-103 (161)
292 3t5x_A PCI domain-containing p 57.4 31 0.0011 28.5 7.0 38 244-281 11-48 (203)
293 2qx5_A Nucleoporin NIC96; mRNA 54.3 1.1E+02 0.0037 30.8 11.4 37 251-308 447-483 (661)
294 3t5v_B Nuclear mRNA export pro 50.4 51 0.0017 31.3 8.0 72 320-411 178-254 (455)
295 2cfu_A SDSA1; SDS-hydrolase, l 50.3 15 0.00051 37.1 4.7 49 11-59 449-497 (658)
296 2cfu_A SDSA1; SDS-hydrolase, l 49.4 35 0.0012 34.5 7.2 50 446-495 449-498 (658)
297 3lpz_A GET4 (YOR164C homolog); 48.3 1.6E+02 0.0053 26.6 26.0 24 318-341 136-159 (336)
298 1om2_A Protein (mitochondrial 47.7 24 0.00081 24.8 3.9 32 250-281 23-54 (95)
299 2wpv_A GET4, UPF0363 protein Y 46.4 1.6E+02 0.0055 26.2 24.9 47 10-70 12-58 (312)
300 2rpa_A Katanin P60 ATPase-cont 46.3 27 0.00091 23.5 3.9 25 416-440 16-40 (78)
301 3re2_A Predicted protein; meni 45.8 78 0.0027 28.6 7.7 64 376-439 253-323 (472)
302 2dl1_A Spartin; SPG20, MIT, st 44.6 9.1 0.00031 27.9 1.5 15 428-442 19-33 (116)
303 4a5x_A MITD1, MIT domain-conta 44.0 51 0.0017 22.6 5.2 30 246-275 15-44 (86)
304 4gq4_A Menin; tumor suppressor 41.8 1.7E+02 0.0059 27.1 9.4 29 445-473 302-330 (489)
305 2cwy_A Hypothetical protein TT 40.9 91 0.0031 21.8 6.4 56 383-440 6-67 (94)
306 2ijq_A Hypothetical protein; s 39.6 1.4E+02 0.0047 23.5 9.2 63 247-309 32-103 (161)
307 2v6x_A Vacuolar protein sortin 38.4 60 0.0021 22.1 4.9 30 246-275 12-41 (85)
308 2vkj_A TM1634; membrane protei 37.7 95 0.0032 21.2 5.4 28 448-475 55-82 (106)
309 3bqo_A Telomeric repeat-bindin 37.4 38 0.0013 27.5 4.1 40 452-491 123-162 (211)
310 2dl1_A Spartin; SPG20, MIT, st 37.1 47 0.0016 24.3 4.2 45 25-77 17-61 (116)
311 4a1g_A Mitotic checkpoint seri 35.6 1.5E+02 0.0053 22.9 10.1 46 397-442 84-131 (152)
312 2w2u_A Hypothetical P60 katani 35.3 1E+02 0.0036 20.9 7.7 31 245-275 17-47 (83)
313 3esl_A Checkpoint serine/threo 34.4 1.9E+02 0.0066 23.7 12.5 69 373-442 75-145 (202)
314 3u84_A Menin; MLL, JUND, ledgf 34.3 1.4E+02 0.0048 27.6 7.6 32 443-474 315-346 (550)
315 3esl_A Checkpoint serine/threo 32.9 2E+02 0.007 23.5 15.0 83 302-409 58-146 (202)
316 3bu8_A Telomeric repeat-bindin 32.6 62 0.0021 26.7 4.7 42 453-494 121-162 (235)
317 3re2_A Predicted protein; meni 32.4 2E+02 0.0069 26.0 8.2 34 374-407 292-325 (472)
318 2e2a_A Protein (enzyme IIA); h 31.5 96 0.0033 22.2 5.1 32 7-38 16-47 (105)
319 2cpt_A SKD1 protein, vacuolar 31.0 76 0.0026 23.3 4.7 27 247-273 18-44 (117)
320 1wcr_A PTS system, N, N'-diace 30.8 1E+02 0.0034 22.0 5.1 32 7-38 14-45 (103)
321 2yhe_A SEC-alkyl sulfatase; hy 36.9 10 0.00036 38.2 0.0 45 50-94 466-510 (668)
322 2ynq_A ESSB; membrane protein, 30.0 1.5E+02 0.0053 23.1 6.3 88 12-105 9-99 (161)
323 3u84_A Menin; MLL, JUND, ledgf 29.1 2.9E+02 0.0098 25.7 8.7 33 374-406 314-346 (550)
324 2npu_A FKBP12-rapamycin comple 28.5 1E+02 0.0036 22.9 5.0 16 421-436 49-64 (126)
325 2v6y_A AAA family ATPase, P60 28.3 1.4E+02 0.0048 20.2 7.7 31 245-275 9-39 (83)
326 3k1s_A PTS system, cellobiose- 27.5 1.2E+02 0.0042 21.9 5.1 32 7-38 18-49 (109)
327 3bqo_A Telomeric repeat-bindin 26.9 61 0.0021 26.3 3.7 36 19-54 125-160 (211)
328 3mv2_A Coatomer subunit alpha; 26.7 3.4E+02 0.012 24.2 12.7 107 11-117 114-245 (325)
329 3l8r_A PTCA, putative PTS syst 25.6 1.4E+02 0.0046 22.1 5.1 30 8-37 34-63 (120)
330 4b4t_O 26S proteasome regulato 25.2 4.1E+02 0.014 24.5 11.9 93 254-346 83-197 (393)
331 2uwj_G Type III export protein 24.8 1.9E+02 0.0065 20.5 8.3 84 16-105 11-94 (115)
332 4a1g_A Mitotic checkpoint seri 24.5 2.5E+02 0.0085 21.8 7.7 50 429-478 82-133 (152)
333 2p58_C Putative type III secre 24.4 1.9E+02 0.0067 20.5 9.0 84 16-105 12-95 (116)
334 1wfd_A Hypothetical protein 15 24.2 1.8E+02 0.0062 20.1 6.0 26 321-346 18-43 (93)
335 3eab_A Spastin; spastin, MIT, 23.6 70 0.0024 22.0 3.0 17 26-42 12-28 (89)
336 2e2a_A Protein (enzyme IIA); h 22.3 1.7E+02 0.0059 20.9 5.0 32 243-274 16-47 (105)
337 3bu8_A Telomeric repeat-bindin 22.1 3.4E+02 0.012 22.5 8.1 42 254-295 121-162 (235)
338 2qx5_A Nucleoporin NIC96; mRNA 22.0 6.1E+02 0.021 25.4 19.6 25 320-344 445-469 (661)
339 1wcr_A PTS system, N, N'-diace 21.7 1.8E+02 0.0062 20.7 5.0 32 243-274 14-45 (103)
340 2f4m_B UV excision repair prot 21.4 1.3E+02 0.0043 19.0 3.7 24 514-537 8-31 (61)
341 2xze_A STAM-binding protein; h 20.7 1.4E+02 0.0048 23.0 4.7 31 8-38 37-67 (146)
342 3s6n_M SurviVal motor neuron p 20.7 72 0.0025 17.3 2.0 16 26-41 17-32 (37)
343 2p58_C Putative type III secre 20.4 2.4E+02 0.0082 20.1 8.9 75 389-469 18-92 (116)
344 2uwj_G Type III export protein 20.2 2.4E+02 0.0082 20.0 9.1 75 389-469 17-91 (115)
345 2yhe_A SEC-alkyl sulfatase; hy 25.0 23 0.00077 35.8 0.0 49 449-497 464-512 (668)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.3e-44 Score=349.10 Aligned_cols=378 Identities=17% Similarity=0.182 Sum_probs=322.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccC
Q psy3014 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGR 94 (570)
Q Consensus 15 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 94 (570)
+.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhC
Q psy3014 95 YKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKD 174 (570)
Q Consensus 95 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (570)
+++|+..|+++++++|++..++..++.++...++...+...+.+.+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---------------------------------- 128 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL---------------------------------- 128 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------------------
Confidence 9999999999999999999999999998877443332222111111
Q ss_pred chhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHH
Q psy3014 175 PSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELG 254 (570)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 254 (570)
...|+....+..+|
T Consensus 129 ------------------------------------------------------------------~~~p~~~~~~~~l~ 142 (388)
T 1w3b_A 129 ------------------------------------------------------------------QYNPDLYCVRSDLG 142 (388)
T ss_dssp ------------------------------------------------------------------HHCTTCTHHHHHHH
T ss_pred ------------------------------------------------------------------HhCCCcHHHHHHHH
Confidence 11224456778899
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCH
Q psy3014 255 NEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDW 334 (570)
Q Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 334 (570)
.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++ ..++..+|.++...|++
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF---LDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCT
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999999999999999999999999999998 88999999999999999
Q ss_pred HHHHHHHHHHhcccCCH--------HHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q psy3014 335 KNAKVYFEKSMSEHRTP--------EIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAIN 406 (570)
Q Consensus 335 ~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 406 (570)
++|+..|++++...|.. .++...+++++|+..+++++..+|..+.++..+|.++...|++++|+..|+++++
T Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999977652 2344556777888888888888888888888888888888888888888888888
Q ss_pred cCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy3014 407 RNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486 (570)
Q Consensus 407 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 486 (570)
..|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+.+|+++++++|+++.++.++
T Consensus 300 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~l 379 (388)
T 1w3b_A 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcC
Q psy3014 487 RQCSIAVSS 495 (570)
Q Consensus 487 ~~~~~~~~~ 495 (570)
+.++..+|+
T Consensus 380 g~~~~~~~~ 388 (388)
T 1w3b_A 380 GNTLKEMQD 388 (388)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHccC
Confidence 888777663
No 2
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=2.4e-39 Score=310.49 Aligned_cols=335 Identities=19% Similarity=0.312 Sum_probs=312.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
+++.++.+|..++..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHHhhccCC---CcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHH
Q psy3014 90 SYLGRYKESISTYEEGLKLDP---NNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ 166 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (570)
...|++++|+..|+++++.+| ++..++..++.+...
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------------------------- 120 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM----------------------------------------- 120 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH-----------------------------------------
Confidence 999999999999999999999 888887766655433
Q ss_pred HHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHH
Q psy3014 167 MIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRS 246 (570)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (570)
T Consensus 121 -------------------------------------------------------------------------------- 120 (359)
T 3ieg_A 121 -------------------------------------------------------------------------------- 120 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGN 326 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (570)
..+..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|++ ..++..+|.
T Consensus 121 -~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~ 196 (359)
T 3ieg_A 121 -QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN---TEAFYKIST 196 (359)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC---HHHHHHHHH
T ss_pred -HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Confidence 3455689999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHH------------HHHHHHHHHHCCCH
Q psy3014 327 CYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEE------------AKERGNELFKNGKY 394 (570)
Q Consensus 327 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 394 (570)
++...|++++|+..+++++.. .|....+ ...+|.++...|++
T Consensus 197 ~~~~~~~~~~A~~~~~~a~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 250 (359)
T 3ieg_A 197 LYYQLGDHELSLSEVRECLKL--------------------------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 250 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhh--------------------------CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999994 4444433 34568899999999
Q ss_pred HHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q psy3014 395 ADAVKEYTEAINRNPDDPK----YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYE 470 (570)
Q Consensus 395 ~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (570)
++|+..++++++..|+++. ++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+.+|+
T Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 330 (359)
T 3ieg_A 251 TDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 330 (359)
T ss_dssp HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999874 466799999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 471 KALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 471 ~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
++++++|+++.++..++.+...+++
T Consensus 331 ~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 331 AAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999887763
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.3e-40 Score=321.04 Aligned_cols=355 Identities=17% Similarity=0.221 Sum_probs=323.9
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHh
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (570)
+...|.++..+..+|.+++..|++++|+..++++++.+|.++.++..+|.++...|++++|+..|++++..+|+++.++.
T Consensus 26 ~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 105 (388)
T 1w3b_A 26 WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYI 105 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChH
Q psy3014 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS 163 (570)
Q Consensus 84 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (570)
.+|.++...|++++|+..|+++++.+|++..++..++.++...++...+...+.+
T Consensus 106 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~------------------------- 160 (388)
T 1w3b_A 106 NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK------------------------- 160 (388)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH-------------------------
Confidence 9999999999999999999999999999999999999888763222111111111
Q ss_pred HHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchh
Q psy3014 164 YVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDE 243 (570)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (570)
.+...
T Consensus 161 ---------------------------------------------------------------------------al~~~ 165 (388)
T 1w3b_A 161 ---------------------------------------------------------------------------AIETQ 165 (388)
T ss_dssp ---------------------------------------------------------------------------HHHHC
T ss_pred ---------------------------------------------------------------------------HHHhC
Confidence 11112
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQR 323 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 323 (570)
|..+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|++ ..++..
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 242 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH---AVVHGN 242 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC---HHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC---HHHHHH
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCC--------HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHH
Q psy3014 324 IGNCYKKMEDWKNAKVYFEKSMSEHRT--------PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYA 395 (570)
Q Consensus 324 l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (570)
+|.++...|++++|+..|++++...|. ...+...|++++|+..+++++...|.++.++..+|.++...|+++
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999998876 234556678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Q psy3014 396 DAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQ 461 (570)
Q Consensus 396 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 461 (570)
+|+..|+++++..|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|+
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999999999999999999999999999999999999999988874
No 4
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=4e-39 Score=319.09 Aligned_cols=342 Identities=18% Similarity=0.297 Sum_probs=314.8
Q ss_pred hhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHH
Q psy3014 3 NLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGY 82 (570)
Q Consensus 3 ~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 82 (570)
.+...|.++..++.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++
T Consensus 18 ~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 97 (450)
T 2y4t_A 18 LYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAAR 97 (450)
T ss_dssp -----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhccCHHHHHHHHHHhhccCCCcH---HHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCC
Q psy3014 83 SRKGSALSYLGRYKESISTYEEGLKLDPNNE---QMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL 159 (570)
Q Consensus 83 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (570)
..+|.++...|++++|+..|+++++.+|++. .++..++.++..
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------------------- 143 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM---------------------------------- 143 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----------------------------------
Confidence 9999999999999999999999999999998 777766555433
Q ss_pred CChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q psy3014 160 SDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKN 239 (570)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (570)
T Consensus 144 -------------------------------------------------------------------------------- 143 (450)
T 2y4t_A 144 -------------------------------------------------------------------------------- 143 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHH
Q psy3014 240 LTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAK 319 (570)
Q Consensus 240 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 319 (570)
..+..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..++++++.+|++ ..
T Consensus 144 --------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~ 212 (450)
T 2y4t_A 144 --------QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN---TE 212 (450)
T ss_dssp --------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC---HH
T ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HH
Confidence 3455689999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHH------------HHHH
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKE------------RGNE 387 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~~~~ 387 (570)
++..+|.++...|++++|+..|++++. ..|.....+.. +|.+
T Consensus 213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------------~~p~~~~~~~~~~~~~~~~~~~~~~~~ 266 (450)
T 2y4t_A 213 AFYKISTLYYQLGDHELSLSEVRECLK--------------------------LDQDHKRCFAHYKQVKKLNKLIESAEE 266 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 45555554444 4999
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHH
Q psy3014 388 LFKNGKYADAVKEYTEAINRNPDDPK----YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQS 463 (570)
Q Consensus 388 ~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 463 (570)
+...|++++|+.+|+++++..|+++. ++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+++
T Consensus 267 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 346 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYD 346 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHH
Confidence 99999999999999999999999854 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 464 KAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 464 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
+|+.+|+++++++|+++.++..++.+....++
T Consensus 347 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 347 EAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999987766553
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-38 Score=321.80 Aligned_cols=409 Identities=19% Similarity=0.219 Sum_probs=297.2
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
...++.++.+|..++..|+|++|+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 45789999999999999999999999999999999 58999999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhc---cCCCcccc---------------------ccCCCc
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND---MNRGDPFA---------------------NLFSDP 143 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~---~~~~~~~~---------------------~~~~~~ 143 (570)
++..+|++++|+..|++++..+|.+................. ......+. ......
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999999999986654332222211110110 11110000 000000
Q ss_pred hHHH----H--hhhCCCCCCCC-----------------CChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCccc
Q psy3014 144 NIFV----Q--LQLDPRTKPFL-----------------SDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMS 200 (570)
Q Consensus 144 ~~~~----~--~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (570)
.... . ........... ....+..++..+. ........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--------------------~~~~~~~~ 221 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFT--------------------KAARLFEE 221 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH--------------------HHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH--------------------HHHHHhhh
Confidence 0000 0 00000000000 0111111111111 11110000
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q psy3014 201 STMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD 280 (570)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 280 (570)
. ...........|..+.++..+|.++...|++++|+..|++++..+|.
T Consensus 222 ~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~- 269 (514)
T 2gw1_A 222 Q-------------------------------LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR- 269 (514)
T ss_dssp H-------------------------------TTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-
T ss_pred h-------------------------------hccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-
Confidence 0 00000001123678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHH
Q psy3014 281 ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360 (570)
Q Consensus 281 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 360 (570)
+.++..+|.++...|++++|+..+++++...|++ ..++..+|.++...|++++|+..+++++.
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------- 332 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN---SSVYYHRGQMNFILQNYDQAGKDFDKAKE-------------- 332 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC---THHHHHHHHHHHHTTCTTHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------------
Confidence 9999999999999999999999999999999998 88999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
..|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..+++++.
T Consensus 333 ------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 333 ------------LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp ------------TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56666667777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCCCHH------HHHHHHHHHHh---CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHH
Q psy3014 441 LDPKFLK------GWIRKGKILQG---MQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 441 ~~p~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e 498 (570)
..|+++. ++..+|.++.. .|++++|+..|+++++.+|+++.++..++.++...|+..+
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 7666644 67777777777 7777777777777777777777777777777777776443
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1e-37 Score=316.37 Aligned_cols=376 Identities=23% Similarity=0.294 Sum_probs=283.3
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
....++.++.+|..++..|+|++|+..|++++..+|+++.++..+|.++..+|++++|+..|+++++.+|+++.+++.+|
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 100 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCcHHHHH-------------------------------------------------
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNNEQMKE------------------------------------------------- 117 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------------------------------------------- 117 (570)
.++...|++++|+..|+ ++..+|+....+.
T Consensus 101 ~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999999995 8888777544321
Q ss_pred -------------------HHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhH
Q psy3014 118 -------------------AIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLM 178 (570)
Q Consensus 118 -------------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (570)
.+..++.... ..+.... ..+..++..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~a~---------------------~~~~~A~~~~------- 225 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATD------EGYLVAN---------------------DLLTKSTDMY------- 225 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSH------HHHHHHH---------------------HHHHHHHHHH-------
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhh------hhhHHHH---------------------HHHHHHHHHH-------
Confidence 1111100000 0000000 0111111111
Q ss_pred HhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHH
Q psy3014 179 TTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAY 258 (570)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 258 (570)
...+.... .........+.++..+|.++.
T Consensus 226 -------------~~~l~~~p--------------------------------------~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 226 -------------HSLLSANT--------------------------------------VDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp -------------HHHHC--C--------------------------------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHCC--------------------------------------CcchhhHHHHHHHHHHHHHHH
Confidence 11110000 000112245678899999999
Q ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHH
Q psy3014 259 KKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAK 338 (570)
Q Consensus 259 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 338 (570)
..|++++|+..|++++..+|+ +.++..+|.++...|++++|+..++++++.+|++ +.++..+|.++...|++++|+
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY---PPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 339 VYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNR 418 (570)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 418 (570)
..|++++. .+|.++.++..+|.++...|++++|+..|+++++..|+++.++..+
T Consensus 331 ~~~~~a~~--------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 384 (537)
T 3fp2_A 331 EDFQKAQS--------------------------LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384 (537)
T ss_dssp HHHHHHHH--------------------------HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999 5666667777777777777777777777777777777777777777
Q ss_pred HHHHHHhcChHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHhC----------CCHHHHHHHHHHHHhhCCCcHHH
Q psy3014 419 AACYTKLAAFDLGLKDCETCLKLDPKFLK------GWIRKGKILQGM----------QQQSKAIDAYEKALELDASNAEA 482 (570)
Q Consensus 419 a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~ 482 (570)
|.++...|++++|+..|++++...|++.. .++.+|.++... |++++|+.+|+++++.+|+++.+
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 464 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA 464 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHH
Confidence 77777777777777777777776654432 244556667666 77777777777777777777777
Q ss_pred HHHHHHHHHHhcCCHH
Q psy3014 483 VEGYRQCSIAVSSNPE 498 (570)
Q Consensus 483 ~~~l~~~~~~~~~~~e 498 (570)
+..++.++..+|+..+
T Consensus 465 ~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 465 KIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhccHHH
Confidence 7777777777777443
No 7
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.4e-37 Score=313.82 Aligned_cols=252 Identities=15% Similarity=0.129 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
.++.++..+|..+...|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++..|++ ..++..+
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l 379 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK---AVTWLAV 379 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS---HHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc---HHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCC--------HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRT--------PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYAD 396 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (570)
|.+|...|++++|+..|++++...|. ...+...|++++|+..+++++...|.+..++..+|.++...|++++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999987766 2345666789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc------CCCC-HHHHHHHHHHHHhCCCHHHHHHHH
Q psy3014 397 AVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL------DPKF-LKGWIRKGKILQGMQQQSKAIDAY 469 (570)
Q Consensus 397 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~~~l~~~~~~~g~~~~A~~~~ 469 (570)
|+..|+++++..|.++.+|..+|.++...|++++|+..|+++++. +|+. ..++..+|.++...|++++|+..|
T Consensus 460 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 460 ANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999999999999999999999999999999999988 6664 789999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhcCCHHH
Q psy3014 470 EKALELDASNAEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 470 ~~al~~~p~~~~~~~~l~~~~~~~~~~~e~ 499 (570)
+++++++|+++.++..++.++...|+..++
T Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999999999986553
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.4e-37 Score=315.25 Aligned_cols=354 Identities=16% Similarity=0.110 Sum_probs=309.9
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhch------------------------------------
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNR------------------------------------ 51 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l------------------------------------ 51 (570)
+.++..+..+|..+...|++++|+..|+++++.+|++..++..+
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 45689999999999999999999999999999999988776655
Q ss_pred --hHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhc
Q psy3014 52 --SAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129 (570)
Q Consensus 52 --a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 129 (570)
+.+|.+.|++++|+..|++++.. |.++.++..+|.++...|++++|+..|+++++.+|++..++..++.++...++.
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCH
Confidence 45566889999999999999988 788999999999999999999999999999999999988888888877663222
Q ss_pred cCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCc
Q psy3014 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAE 209 (570)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (570)
..+...+ ....
T Consensus 356 ~~A~~~~-------------------------------------------------------~~~~-------------- 366 (597)
T 2xpi_A 356 NKLYLIS-------------------------------------------------------NDLV-------------- 366 (597)
T ss_dssp HHHHHHH-------------------------------------------------------HHHH--------------
T ss_pred HHHHHHH-------------------------------------------------------HHHH--------------
Confidence 1111100 0000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 210 EMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAA 289 (570)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 289 (570)
...|.++.++..+|.++...|++++|+.+|+++++.+|.+..+|..+|.
T Consensus 367 -------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 415 (597)
T 2xpi_A 367 -------------------------------DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAH 415 (597)
T ss_dssp -------------------------------HHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -------------------------------hhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 0112446777888999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Q psy3014 290 VYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEK 369 (570)
Q Consensus 290 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 369 (570)
++...|++++|+..|+++++..|++ ..++..+|.+|...|++++|+..|++++.
T Consensus 416 ~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------- 469 (597)
T 2xpi_A 416 SFAIEGEHDQAISAYTTAARLFQGT---HLPYLFLGMQHMQLGNILLANEYLQSSYA----------------------- 469 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------
Confidence 9999999999999999999888887 78888899999999999999999998888
Q ss_pred HhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCC-HHHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy3014 370 KAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR------NPDD-PKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 442 (570)
..|.++.++..+|.++...|++++|+..|+++++. +|++ ..+|..+|.++...|++++|+..|+++++.+
T Consensus 470 ---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 470 ---LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp ---HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ---hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 78889999999999999999999999999999988 6654 7899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy3014 443 PKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSI 491 (570)
Q Consensus 443 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 491 (570)
|+++.++..+|.+|...|++++|+.+|+++++++|+++.++..++.++.
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998764
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-36 Score=304.62 Aligned_cols=350 Identities=14% Similarity=0.137 Sum_probs=310.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCC------------
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD------------ 77 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------ 77 (570)
++..+..+|.+++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|++++...|.
T Consensus 38 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (514)
T 2gw1_A 38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERN 117 (514)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHH
T ss_pred cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999888763
Q ss_pred -------------------------------------------------------------------ChhHHhHHHHHHh
Q psy3014 78 -------------------------------------------------------------------WPKGYSRKGSALS 90 (570)
Q Consensus 78 -------------------------------------------------------------------~~~~~~~la~~~~ 90 (570)
+..+++.+|.++.
T Consensus 118 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (514)
T 2gw1_A 118 LNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL 197 (514)
T ss_dssp HHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 2667788888887
Q ss_pred h---ccCHHHHHHHHHHhhc-----c--CCC-------cHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCC
Q psy3014 91 Y---LGRYKESISTYEEGLK-----L--DPN-------NEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDP 153 (570)
Q Consensus 91 ~---~g~~~~A~~~~~~al~-----~--~p~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (570)
. .|++++|+..|+++++ + +|+ +..++..++.++...++..
T Consensus 198 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 254 (514)
T 2gw1_A 198 YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL----------------------- 254 (514)
T ss_dssp SSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH-----------------------
T ss_pred HhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH-----------------------
Confidence 6 8999999999999999 6 444 4556667777666522211
Q ss_pred CCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 154 RTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPA 233 (570)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (570)
.++..+.. .
T Consensus 255 ------------~A~~~~~~--------------------~--------------------------------------- 263 (514)
T 2gw1_A 255 ------------GAHEDIKK--------------------A--------------------------------------- 263 (514)
T ss_dssp ------------HHHHHHHH--------------------H---------------------------------------
T ss_pred ------------HHHHHHHH--------------------H---------------------------------------
Confidence 11111110 0
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccC
Q psy3014 234 EPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD 313 (570)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 313 (570)
+...|. +.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++..|+
T Consensus 264 ------l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 336 (514)
T 2gw1_A 264 ------IELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336 (514)
T ss_dssp ------HHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS
T ss_pred ------HhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh
Confidence 011123 6778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC
Q psy3014 314 FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGK 393 (570)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (570)
+ ..++..+|.++...|++++|+..+++++. ..|.++.++..+|.++...|+
T Consensus 337 ~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 337 N---IFPYIQLACLAYRENKFDDCETLFSEAKR--------------------------KFPEAPEVPNFFAEILTDKND 387 (514)
T ss_dssp C---SHHHHHHHHHTTTTTCHHHHHHHHHHHHH--------------------------HSTTCSHHHHHHHHHHHHTTC
T ss_pred h---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------HcccCHHHHHHHHHHHHHCCC
Confidence 8 88999999999999999999999999998 788888999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHH---hcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH
Q psy3014 394 YADAVKEYTEAINRNPDDPK------YYSNRAACYTK---LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK 464 (570)
Q Consensus 394 ~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 464 (570)
+++|+.+|++++...|+++. ++..+|.++.. .|++++|+..|++++..+|+++.++..+|.++...|++++
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 99999999999999888755 99999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHH
Q psy3014 465 AIDAYEKALELDASNAEAVEGYRQC 489 (570)
Q Consensus 465 A~~~~~~al~~~p~~~~~~~~l~~~ 489 (570)
|+.+|+++++++|+++.++..+...
T Consensus 468 A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 468 AITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHH
Confidence 9999999999999999998877544
No 10
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=273.86 Aligned_cols=298 Identities=18% Similarity=0.142 Sum_probs=225.9
Q ss_pred HHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHH
Q psy3014 35 SEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114 (570)
Q Consensus 35 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (570)
...+...|+++..+..+|.+++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|++..
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 91 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV 91 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH
Confidence 34455566677777777777777777777777777777777777777777777777777777777777777777776554
Q ss_pred HHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHH
Q psy3014 115 MKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVL 194 (570)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (570)
++.
T Consensus 92 ~~~----------------------------------------------------------------------------- 94 (330)
T 3hym_B 92 SWF----------------------------------------------------------------------------- 94 (330)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 433
Q ss_pred hcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHH
Q psy3014 195 LGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKK-NFEEALAHYNKA 273 (570)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a 273 (570)
.+|.++...| ++++|+.+|+++
T Consensus 95 ---------------------------------------------------------~l~~~~~~~~~~~~~A~~~~~~a 117 (330)
T 3hym_B 95 ---------------------------------------------------------AVGCYYLMVGHKNEHARRYLSKA 117 (330)
T ss_dssp ---------------------------------------------------------HHHHHHHHSCSCHHHHHHHHHHH
T ss_pred ---------------------------------------------------------HHHHHHHHhhhhHHHHHHHHHHH
Confidence 3555566677 777777777777
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHH
Q psy3014 274 VEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEI 353 (570)
Q Consensus 274 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 353 (570)
+..+|.++.++..+|.++...|++++|+..++++++..|+. ..++..+|.++...|++++|+..+++++.
T Consensus 118 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~------- 187 (330)
T 3hym_B 118 TTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC---HLPMLYIGLEYGLTNNSKLAERFFSQALS------- 187 (330)
T ss_dssp HTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------
T ss_pred HHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------
Confidence 77777777777788888888888888888888887777776 66677778888888888888888877777
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHH
Q psy3014 354 RTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN---------PDDPKYYSNRAACYTK 424 (570)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~ 424 (570)
..|.++.++..+|.++...|++++|+..+++++... |..+.++..+|.++..
T Consensus 188 -------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 188 -------------------IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp -------------------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred -------------------hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 677777777888888888888888888888887765 5566788888888888
Q ss_pred hcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhcC
Q psy3014 425 LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSI-AVSS 495 (570)
Q Consensus 425 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~ 495 (570)
.|++++|+..+++++..+|+++.++..+|.++..+|++++|+.+|+++++++|+++.++..++.++. ..|+
T Consensus 249 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 8888888888888888888888888888888888888888888888888888888888888888774 4443
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=274.14 Aligned_cols=306 Identities=13% Similarity=0.097 Sum_probs=276.7
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHh
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (570)
+...+.+++.++.+|..++..|+|++|+..|++++..+|.+..++..++.++...|++++|+..++++++.+|+++.+++
T Consensus 15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 94 (330)
T 3hym_B 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWF 94 (330)
T ss_dssp -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHH
Confidence 44566778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcc-CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCCh
Q psy3014 84 RKGSALSYLG-RYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP 162 (570)
Q Consensus 84 ~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (570)
.+|.++...| ++++|+..|+++++.+|++..++.
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------------------------------------------- 129 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWI--------------------------------------------- 129 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHH---------------------------------------------
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHH---------------------------------------------
Confidence 9999999999 999999999999999997765543
Q ss_pred HHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccch
Q psy3014 163 SYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTD 242 (570)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (570)
T Consensus 130 -------------------------------------------------------------------------------- 129 (330)
T 3hym_B 130 -------------------------------------------------------------------------------- 129 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
.+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..++++++..|++ ..++.
T Consensus 130 ---------~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~ 197 (330)
T 3hym_B 130 ---------AYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED---PFVMH 197 (330)
T ss_dssp ---------HHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---HHHHH
T ss_pred ---------HHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC---hHHHH
Confidence 467777789999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
.+|.++...|++++|+..+++++...+.... ....|..+.++..+|.++...|++++|+.+|+
T Consensus 198 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGN-----------------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC-----------------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHhhhccc-----------------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999999999984321100 00115667899999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HhCCCHH
Q psy3014 403 EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKIL-QGMQQQS 463 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~ 463 (570)
++++..|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+|.++ ...|+.+
T Consensus 261 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 261 QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999999999999999999999999999999999999999998 5666654
No 12
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.9e-35 Score=292.25 Aligned_cols=373 Identities=12% Similarity=0.046 Sum_probs=260.4
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---------CCCCcchhhchhHHHhcccCHHHHHHHHhchhccC---
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKL---------DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK--- 75 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 75 (570)
+..+..+..+|.++...|++++|++.|++++++ +|....++.++|.+|..+|++++|+.++++++++.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344677889999999999999999999999986 56666788999999999999999999999998763
Q ss_pred -----CCChhHHhHHHHHHhhc--cCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHH
Q psy3014 76 -----PDWPKGYSRKGSALSYL--GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQ 148 (570)
Q Consensus 76 -----p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (570)
+..+.++..+|.++... +++++|+.+|+++++++|+++.++..++.+.............+.
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~----------- 196 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAID----------- 196 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHH-----------
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHH-----------
Confidence 34567888888777665 579999999999999999999999988887665222211111000
Q ss_pred hhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy3014 149 LQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPP 228 (570)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (570)
...
T Consensus 197 -----------------~~~------------------------------------------------------------ 199 (472)
T 4g1t_A 197 -----------------PLR------------------------------------------------------------ 199 (472)
T ss_dssp -----------------HHH------------------------------------------------------------
T ss_pred -----------------HHH------------------------------------------------------------
Confidence 000
Q ss_pred CCCCCCCCCcccchhHHHHHHHHHHHHHHH----HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q psy3014 229 AKKPAEPEDKNLTDEQRSAKKEKELGNEAY----KKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQY 304 (570)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 304 (570)
+.+..+|..+.++..+|..+. ..|++++|+.++++++..+|.++.++..+|.++...|++++|+..+
T Consensus 200 ---------~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 270 (472)
T 4g1t_A 200 ---------QAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELL 270 (472)
T ss_dssp ---------HHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------HHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 011112234555556665544 4577889999999999999999999999999999999999999999
Q ss_pred HHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHH
Q psy3014 305 IQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKER 384 (570)
Q Consensus 305 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 384 (570)
+++++.+|++ +.++..+|.+|...+....+.... ...........++.|+..+++++..+|..+.++..+
T Consensus 271 ~~al~~~p~~---~~~~~~lg~~y~~~~~~~~~~~~~-------~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 340 (472)
T 4g1t_A 271 KKALEYIPNN---AYLHCQIGCCYRAKVFQVMNLREN-------GMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSIL 340 (472)
T ss_dssp HHHHHHSTTC---HHHHHHHHHHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHH
T ss_pred HHHHHhCCCh---HHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhH
Confidence 9999999999 899999999987654332222111 112233445567788888888888999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHH-HHHhcChHHHHHHHHHHHhcCCCC---------------
Q psy3014 385 GNELFKNGKYADAVKEYTEAINRNPDDPK---YYSNRAAC-YTKLAAFDLGLKDCETCLKLDPKF--------------- 445 (570)
Q Consensus 385 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~--------------- 445 (570)
|.++...|++++|+.+|+++++..|++.. ++..+|.+ +...|++++|+..|++++.+.|++
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~ 420 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAK 420 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999998886543 45666654 456788999999999988876654
Q ss_pred ---------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy3014 446 ---------LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYR 487 (570)
Q Consensus 446 ---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 487 (570)
+.++..+|.+|..+|++++|+++|++|+++.|.++.+...+|
T Consensus 421 ~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 421 MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 444555555555555555555555555555555555544443
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=8e-34 Score=280.98 Aligned_cols=325 Identities=14% Similarity=0.163 Sum_probs=283.0
Q ss_pred CHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHh
Q psy3014 26 NFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEG 105 (570)
Q Consensus 26 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 105 (570)
....+...+.+++..+|.++..++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++
T Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCc
Q psy3014 106 LKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDP 185 (570)
Q Consensus 106 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (570)
++.+|++..++
T Consensus 87 l~~~p~~~~~~--------------------------------------------------------------------- 97 (450)
T 2y4t_A 87 IQLKMDFTAAR--------------------------------------------------------------------- 97 (450)
T ss_dssp HHHCTTCHHHH---------------------------------------------------------------------
T ss_pred HhcCCCcHHHH---------------------------------------------------------------------
Confidence 99999775544
Q ss_pred cHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHH
Q psy3014 186 RMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEE 265 (570)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 265 (570)
..+|.++...|++++
T Consensus 98 -----------------------------------------------------------------~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 98 -----------------------------------------------------------------LQRGHLLLKQGKLDE 112 (450)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHTTCHHH
T ss_pred -----------------------------------------------------------------HHHHHHHHHcCCHHH
Confidence 346777788999999
Q ss_pred HHHHHHHHHhcCCCCH---HHHHHH------------HHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHH
Q psy3014 266 ALAHYNKAVEFDPTDI---TFQNNI------------AAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKK 330 (570)
Q Consensus 266 A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 330 (570)
|+..|++++..+|++. .++..+ |.++...|++++|+..++++++..|++ ..++..+|.+|..
T Consensus 113 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 189 (450)
T 2y4t_A 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD---AELRELRAECFIK 189 (450)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHH
Confidence 9999999999999988 776655 666999999999999999999999999 8999999999999
Q ss_pred cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q psy3014 331 MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD 410 (570)
Q Consensus 331 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 410 (570)
.|++++|+..|++++. .+|.++.++..+|.++...|++++|+..|++++...|+
T Consensus 190 ~g~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 190 EGEPRKAISDLKAASK--------------------------LKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp TTCGGGGHHHHHHHHH--------------------------HHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999998 77888999999999999999999999999999999999
Q ss_pred CHHHHHHH------------HHHHHHhcChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 411 DPKYYSNR------------AACYTKLAAFDLGLKDCETCLKLDPKFLK----GWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 411 ~~~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
++..+..+ |.++...|++++|+..|++++...|+++. .+..+|.++...|++++|+..++++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99888766 99999999999999999999999999854 788899999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhcCCHHHH---HHHHcCCchHHHh
Q psy3014 475 LDASNAEAVEGYRQCSIAVSSNPEEV---RKRAMGDPEVQQI 513 (570)
Q Consensus 475 ~~p~~~~~~~~l~~~~~~~~~~~e~~---~~~~~~~p~~~~~ 513 (570)
++|+++.++..++.++...|+..++. ...+..+|.....
T Consensus 324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 99999999999999999999965433 2333455655443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=5.6e-33 Score=266.14 Aligned_cols=307 Identities=14% Similarity=0.193 Sum_probs=279.2
Q ss_pred CcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q psy3014 44 NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123 (570)
Q Consensus 44 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 123 (570)
++..++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++..++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------- 74 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAAR------- 74 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHH-------
Confidence 3567899999999999999999999999999999999999999999999999999999999999999776544
Q ss_pred HHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCC
Q psy3014 124 NQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTM 203 (570)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (570)
T Consensus 75 -------------------------------------------------------------------------------- 74 (359)
T 3ieg_A 75 -------------------------------------------------------------------------------- 74 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---CC
Q psy3014 204 GDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDP---TD 280 (570)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~ 280 (570)
..+|.++...|++++|+..|+++++.+| ++
T Consensus 75 -----------------------------------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 107 (359)
T 3ieg_A 75 -----------------------------------------------LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE 107 (359)
T ss_dssp -----------------------------------------------HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH
T ss_pred -----------------------------------------------HHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh
Confidence 3467777789999999999999999999 88
Q ss_pred HHHHHHH------------HHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy3014 281 ITFQNNI------------AAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEH 348 (570)
Q Consensus 281 ~~~~~~l------------a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 348 (570)
+.++..+ |.++...|++++|+..++++++..|++ ..++..+|.++...|++++|+..+++++.
T Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-- 182 (359)
T 3ieg_A 108 KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD---AELRELRAECFIKEGEPRKAISDLKAASK-- 182 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 8888777 789999999999999999999999999 89999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH------------
Q psy3014 349 RTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYS------------ 416 (570)
Q Consensus 349 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------ 416 (570)
..|.++.++..+|.++...|++++|+..|+++++..|+++.++.
T Consensus 183 ------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 183 ------------------------LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp ------------------------TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999988654
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy3014 417 NRAACYTKLAAFDLGLKDCETCLKLDPKFLK----GWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIA 492 (570)
Q Consensus 417 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 492 (570)
.+|.++...|++++|+..+++++...|+++. ++..+|.++...|++++|+.+|+++++.+|+++.++..++.++..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4488899999999999999999999999874 466799999999999999999999999999999999999999999
Q ss_pred hcCCHHHH---HHHHcCCchHHHh
Q psy3014 493 VSSNPEEV---RKRAMGDPEVQQI 513 (570)
Q Consensus 493 ~~~~~e~~---~~~~~~~p~~~~~ 513 (570)
.|+..++. ...+..+|+....
T Consensus 319 ~g~~~~A~~~~~~a~~~~p~~~~~ 342 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEHNENDQQI 342 (359)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCChHH
Confidence 99965433 2334455654443
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.3e-33 Score=286.28 Aligned_cols=360 Identities=15% Similarity=0.160 Sum_probs=293.7
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHH-
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGY- 82 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~- 82 (570)
+...|.++..+..+|.+++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+ ++..+|+....+
T Consensus 52 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~ 130 (537)
T 3fp2_A 52 IELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASI 130 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC----------
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHH
Confidence 445678899999999999999999999999999999999999999999999999999999999996 777777644321
Q ss_pred -------------------------------------------------------------------hHH--------HH
Q psy3014 83 -------------------------------------------------------------------SRK--------GS 87 (570)
Q Consensus 83 -------------------------------------------------------------------~~l--------a~ 87 (570)
..+ +.
T Consensus 131 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 210 (537)
T 3fp2_A 131 EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEG 210 (537)
T ss_dssp -CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhh
Confidence 112 22
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQM 167 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (570)
.....|++++|+..|+++++.+|++...+..++.++...+..... ...+..+
T Consensus 211 ~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~----------------------------~~~~~~A 262 (537)
T 3fp2_A 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL----------------------------KNNLLDA 262 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH----------------------------TTCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh----------------------------cccHHHH
Confidence 222346899999999999999999988766555554441110000 0011111
Q ss_pred HHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHH
Q psy3014 168 IKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSA 247 (570)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (570)
+..+ ...+ ...|. +
T Consensus 263 ~~~~--------------------~~~~---------------------------------------------~~~~~-~ 276 (537)
T 3fp2_A 263 QVLL--------------------QESI---------------------------------------------NLHPT-P 276 (537)
T ss_dssp HHHH--------------------HHHH---------------------------------------------HHCCC-H
T ss_pred HHHH--------------------HHHH---------------------------------------------hcCCC-c
Confidence 1111 1111 11123 5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++ ..++..+|.+
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~ 353 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN---VYPYIQLACL 353 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---SHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Confidence 6788899999999999999999999999999999999999999999999999999999999999998 8899999999
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q psy3014 328 YKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 407 (570)
+...|++++|+..+++++. ..|.++.++..+|.++...|++++|+..|+++++.
T Consensus 354 ~~~~g~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 354 LYKQGKFTESEAFFNETKL--------------------------KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHH--------------------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--------------------------hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 9999999999999999999 78889999999999999999999999999999998
Q ss_pred CCCCHH------HHHHHHHHHHHh----------cChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy3014 408 NPDDPK------YYSNRAACYTKL----------AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEK 471 (570)
Q Consensus 408 ~p~~~~------~~~~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (570)
.|+++. .+..+|.++... |++++|+..|++++..+|+++.++..+|.++...|++++|+.+|++
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 776543 467778999999 9999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCcHHHHHHHH
Q psy3014 472 ALELDASNAEAVEGYR 487 (570)
Q Consensus 472 al~~~p~~~~~~~~l~ 487 (570)
+++++|++......+.
T Consensus 488 al~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 488 SAILARTMDEKLQATT 503 (537)
T ss_dssp HHHHC--CHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHh
Confidence 9999999988865443
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=1.2e-33 Score=271.76 Aligned_cols=292 Identities=14% Similarity=0.153 Sum_probs=223.7
Q ss_pred HHHHcCCHHHHHH-HHHHHHccCCCC----cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccC
Q psy3014 20 AALQANNFIEAIE-AYSEAIKLDGTN----HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGR 94 (570)
Q Consensus 20 ~~~~~~~~~~A~~-~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 94 (570)
++...|+|++|+. .|++++...|++ ...++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 6667899999999 999999998887 46689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhC
Q psy3014 95 YKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKD 174 (570)
Q Consensus 95 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (570)
+++|+..|+++++.+|++..++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~---------------------------------------------------------- 135 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTAL---------------------------------------------------------- 135 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHH----------------------------------------------------------
T ss_pred HHHHHHHHHHHHhcCCCCHHHH----------------------------------------------------------
Confidence 9999999999999998776544
Q ss_pred chhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHH
Q psy3014 175 PSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELG 254 (570)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 254 (570)
..+|
T Consensus 136 ----------------------------------------------------------------------------~~l~ 139 (368)
T 1fch_A 136 ----------------------------------------------------------------------------MALA 139 (368)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 3467
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHH----------------HHHHHHHHhcCHHHHHHHHHHHhhcccC--hhH
Q psy3014 255 NEAYKKKNFEEALAHYNKAVEFDPTDITFQN----------------NIAAVYFERKEYDQCIEQYIQKIENRAD--FKL 316 (570)
Q Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----------------~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~ 316 (570)
.++...|++++|+..|++++...|.+...+. .++.++ ..|++++|+..++++++..|+ .
T Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~-- 216 (368)
T 1fch_A 140 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSID-- 216 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCC--
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCccc--
Confidence 7777899999999999999999999877665 345444 677777777777777777776 5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHH
Q psy3014 317 IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYAD 396 (570)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (570)
+.++..+|.++...|++++|+..|++++. .+|.++.++..+|.++...|++++
T Consensus 217 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------------------~~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 217 -PDVQCGLGVLFNLSGEYDKAVDCFTAALS--------------------------VRPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCcCCHHHHHHHHHHHHHcCCHHH
Confidence 66777777777777777777777777776 566667777777777777777777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHhCCCHHHH
Q psy3014 397 AVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF-----------LKGWIRKGKILQGMQQQSKA 465 (570)
Q Consensus 397 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~~~l~~~~~~~g~~~~A 465 (570)
|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.+.|++ ..+|..+|.++..+|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 7777777777777777777777777777777777777777777776666 66777777777777777777
Q ss_pred HHHHHHHHhh
Q psy3014 466 IDAYEKALEL 475 (570)
Q Consensus 466 ~~~~~~al~~ 475 (570)
..+++++++.
T Consensus 350 ~~~~~~~l~~ 359 (368)
T 1fch_A 350 GAADARDLST 359 (368)
T ss_dssp HHHHTTCHHH
T ss_pred HHhHHHHHHH
Confidence 7776665543
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=9e-33 Score=265.74 Aligned_cols=304 Identities=15% Similarity=0.202 Sum_probs=247.2
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHH-HHhchhccCCCCh----hHHhHHHHHHhhccCHH
Q psy3014 22 LQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALE-DAEKTISLKPDWP----KGYSRKGSALSYLGRYK 96 (570)
Q Consensus 22 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~ 96 (570)
...+.|+.+...++.+...+|. ++...|++++|+. .|++++...|+++ ..++.+|.++...|+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (368)
T 1fch_A 12 SDVDFWDKLQAELEEMAKRDAE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP 81 (368)
T ss_dssp --------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHH
T ss_pred cCcccHHHHHHHHHHHHcCCch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHH
Confidence 3445555666666655555543 5566789999999 9999999999874 56999999999999999
Q ss_pred HHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCch
Q psy3014 97 ESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPS 176 (570)
Q Consensus 97 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (570)
+|+..|+++++.+|++..++
T Consensus 82 ~A~~~~~~al~~~p~~~~~~------------------------------------------------------------ 101 (368)
T 1fch_A 82 NAVLLFEAAVQQDPKHMEAW------------------------------------------------------------ 101 (368)
T ss_dssp HHHHHHHHHHHSCTTCHHHH------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCCHHHH------------------------------------------------------------
Confidence 99999999999999876544
Q ss_pred hHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHH
Q psy3014 177 LMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNE 256 (570)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 256 (570)
..+|.+
T Consensus 102 --------------------------------------------------------------------------~~l~~~ 107 (368)
T 1fch_A 102 --------------------------------------------------------------------------QYLGTT 107 (368)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 346777
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH--------------
Q psy3014 257 AYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ-------------- 322 (570)
Q Consensus 257 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~-------------- 322 (570)
+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|++ ...+.
T Consensus 108 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 184 (368)
T 1fch_A 108 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY---AHLVTPAEEGAGGAGLGPS 184 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT---GGGCC--------------
T ss_pred HHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHhhhhcccHH
Confidence 8889999999999999999999999999999999999999999999999999999987 33333
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHCCCHHHHH
Q psy3014 323 --RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV--KAEEAKERGNELFKNGKYADAV 398 (570)
Q Consensus 323 --~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~ 398 (570)
.++.++ ..|++++|+..|++++. ..|. .+.++..+|.++...|++++|+
T Consensus 185 ~~~~~~~~-~~~~~~~A~~~~~~a~~--------------------------~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 185 KRILGSLL-SDSLFLEVKELFLAAVR--------------------------LDPTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp -CTTHHHH-HHHHHHHHHHHHHHHHH--------------------------HSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHh-hcccHHHHHHHHHHHHH--------------------------hCcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 455555 77778888888877777 7888 7899999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 399 KEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 399 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
.+|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|+++++++|+
T Consensus 238 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 238 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-----------HHHHHHHHHHHHHhcCCHHH
Q psy3014 479 N-----------AEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 479 ~-----------~~~~~~l~~~~~~~~~~~e~ 499 (570)
+ ..++..++.++..+|+..++
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 8 89999999999999996654
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=100.00 E-value=7.5e-32 Score=258.87 Aligned_cols=280 Identities=17% Similarity=0.151 Sum_probs=219.3
Q ss_pred HHHHHHHHccCCCCc----chhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhh
Q psy3014 31 IEAYSEAIKLDGTNH----ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGL 106 (570)
Q Consensus 31 ~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 106 (570)
+..+.+++...+.++ ..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 355566666655554 4599999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCcc
Q psy3014 107 KLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPR 186 (570)
Q Consensus 107 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (570)
+++|++..++
T Consensus 127 ~~~p~~~~~~---------------------------------------------------------------------- 136 (365)
T 4eqf_A 127 ELQPNNLKAL---------------------------------------------------------------------- 136 (365)
T ss_dssp HHCTTCHHHH----------------------------------------------------------------------
T ss_pred hcCCCCHHHH----------------------------------------------------------------------
Confidence 9998775544
Q ss_pred HHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHH
Q psy3014 187 MMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEA 266 (570)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 266 (570)
..+|.++...|++++|
T Consensus 137 ----------------------------------------------------------------~~l~~~~~~~g~~~~A 152 (365)
T 4eqf_A 137 ----------------------------------------------------------------MALAVSYTNTSHQQDA 152 (365)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHTTCHHHH
T ss_pred ----------------------------------------------------------------HHHHHHHHccccHHHH
Confidence 3467777789999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHH----------HHHHHHhcCHHHHHHHHHHHhhcccC--hhHHHHHHHHHHHHHHHcCCH
Q psy3014 267 LAHYNKAVEFDPTDITFQNNI----------AAVYFERKEYDQCIEQYIQKIENRAD--FKLIAKALQRIGNCYKKMEDW 334 (570)
Q Consensus 267 ~~~~~~al~~~p~~~~~~~~l----------a~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~~l~~~~~~~~~~ 334 (570)
+..|+++++.+|++...+..+ |.++...|++++|+..++++++..|+ + +.++..+|.++...|++
T Consensus 153 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~l~~~~~~~g~~ 229 (365)
T 4eqf_A 153 CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID---PDLQTGLGVLFHLSGEF 229 (365)
T ss_dssp HHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC---HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC---HHHHHHHHHHHHHCCCH
Confidence 999999999998876666554 77888888888888888888888887 6 67788888888888888
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Q psy3014 335 KNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKY 414 (570)
Q Consensus 335 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 414 (570)
++|+..|++++. ..|.++.++..+|.++...|++++|+..|+++++.+|+++.+
T Consensus 230 ~~A~~~~~~al~--------------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 283 (365)
T 4eqf_A 230 NRAIDAFNAALT--------------------------VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283 (365)
T ss_dssp HHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence 888888888887 677777788888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy3014 415 YSNRAACYTKLAAFDLGLKDCETCLKLDPK------------FLKGWIRKGKILQGMQQQSKAIDAYEKAL 473 (570)
Q Consensus 415 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al 473 (570)
+..+|.++...|++++|+..|++++.+.|+ ...+|..+|.++..+|+.+.|....++.+
T Consensus 284 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 284 RYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 888888888888888888888888887766 35667778888888888877776665543
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=100.00 E-value=3.6e-31 Score=254.11 Aligned_cols=220 Identities=13% Similarity=0.200 Sum_probs=198.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHH--------
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKAL-------- 321 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~-------- 321 (570)
+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..|++ ..++
T Consensus 102 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~ 178 (365)
T 4eqf_A 102 WQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKY---KYLVKNKKGSPG 178 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH---HCC---------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccc---hHHHhhhccchH
Confidence 34577788889999999999999999999999999999999999999999999999999999887 4444
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHCCCHHHH
Q psy3014 322 --QRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV--KAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 322 --~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A 397 (570)
..+|.++...|++++|+..|++++. ..|. ++.++..+|.++...|++++|
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~~~~~l~~~~~~~g~~~~A 232 (365)
T 4eqf_A 179 LTRRMSKSPVDSSVLEGVKELYLEAAH--------------------------QNGDMIDPDLQTGLGVLFHLSGEFNRA 232 (365)
T ss_dssp ----------CCHHHHHHHHHHHHHHH--------------------------HSCSSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHH--------------------------hCcCccCHHHHHHHHHHHHHCCCHHHH
Confidence 3459999999999999999999998 7777 889999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
+.+|+++++.+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+.+|+++++++|
T Consensus 233 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 233 IDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C------------cHHHHHHHHHHHHHhcCCHH
Q psy3014 478 S------------NAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 478 ~------------~~~~~~~l~~~~~~~~~~~e 498 (570)
+ +..+|..++.++..+|+...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (365)
T 4eqf_A 313 KSRNQQQVPHPAISGNIWAALRIALSLMDQPEL 345 (365)
T ss_dssp CC------------CHHHHHHHHHHHHHTCHHH
T ss_pred ccCCCcccchhhhHHHHHHHHHHHHHHcCcHHH
Confidence 8 47889999999999998643
No 20
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=100.00 E-value=2.8e-31 Score=251.67 Aligned_cols=263 Identities=13% Similarity=0.043 Sum_probs=244.6
Q ss_pred hchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHH
Q psy3014 69 EKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQ 148 (570)
Q Consensus 69 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (570)
..++.++|++..++..+|.++...|++++|+..|+++++++|++..++.
T Consensus 87 ~~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~------------------------------- 135 (382)
T 2h6f_A 87 VVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWH------------------------------- 135 (382)
T ss_dssp SSEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHH-------------------------------
T ss_pred chhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHH-------------------------------
Confidence 3467889999999999999999999999999999999999998876654
Q ss_pred hhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy3014 149 LQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPP 228 (570)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (570)
T Consensus 136 -------------------------------------------------------------------------------- 135 (382)
T 2h6f_A 136 -------------------------------------------------------------------------------- 135 (382)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccchhHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy3014 229 AKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKN-FEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQK 307 (570)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 307 (570)
.+|.++...|+ +++|+.+|++++.++|++..+|+.+|.++..+|++++|+..|+++
T Consensus 136 -----------------------~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~ka 192 (382)
T 2h6f_A 136 -----------------------FRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI 192 (382)
T ss_dssp -----------------------HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred -----------------------HHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 46677777896 999999999999999999999999999999999999999999999
Q ss_pred hhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q psy3014 308 IENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNE 387 (570)
Q Consensus 308 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 387 (570)
++++|++ ..+|..+|.++...|++++|+.+|++++. .+|.+..+|+.+|.+
T Consensus 193 l~ldP~~---~~a~~~lg~~~~~~g~~~eAl~~~~~al~--------------------------l~P~~~~a~~~lg~~ 243 (382)
T 2h6f_A 193 LNQDAKN---YHAWQHRQWVIQEFKLWDNELQYVDQLLK--------------------------EDVRNNSVWNQRYFV 243 (382)
T ss_dssp HHHCTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHHHH--------------------------HCTTCHHHHHHHHHH
T ss_pred HHhCccC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHH
Confidence 9999999 99999999999999999999999999999 899999999999999
Q ss_pred HHH-CCCHHHH-----HHHHHHHHhcCCCCHHHHHHHHHHHHHhc--ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q psy3014 388 LFK-NGKYADA-----VKEYTEAINRNPDDPKYYSNRAACYTKLA--AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM 459 (570)
Q Consensus 388 ~~~-~~~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 459 (570)
+.. .|.+++| +.+|++++.++|++..+|+++|.++...| ++++|++.+.++ +.+|+++.++..+|.+|..+
T Consensus 244 l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 244 ISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 999 5665888 59999999999999999999999999988 799999999998 99999999999999999987
Q ss_pred C--------C-HHHHHHHHHHH-HhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 460 Q--------Q-QSKAIDAYEKA-LELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 460 g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
| + +++|+++|+++ ++++|.....|..++..+...-+
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~~~ 368 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHC
T ss_pred hcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhc
Confidence 4 3 59999999999 99999999999999998887654
No 21
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=4.1e-31 Score=250.52 Aligned_cols=259 Identities=14% Similarity=0.105 Sum_probs=232.1
Q ss_pred HHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccC-HHHHHHHHHHhhccCCCcHHH
Q psy3014 37 AIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGR-YKESISTYEEGLKLDPNNEQM 115 (570)
Q Consensus 37 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 115 (570)
++..+|++..++..+|.++...|++++|+..|++++.++|++..+|+.+|.++..+|+ +++|+..|+++++++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 4566777888999999999999999999999999999999999999999999999997 999999999999999987666
Q ss_pred HHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHh
Q psy3014 116 KEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLL 195 (570)
Q Consensus 116 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (570)
|.
T Consensus 169 ~~------------------------------------------------------------------------------ 170 (382)
T 2h6f_A 169 WH------------------------------------------------------------------------------ 170 (382)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
Confidence 54
Q ss_pred cCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy3014 196 GVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVE 275 (570)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 275 (570)
.+|.++...|++++|+.+|+++++
T Consensus 171 --------------------------------------------------------~~g~~~~~~g~~~eAl~~~~kal~ 194 (382)
T 2h6f_A 171 --------------------------------------------------------HRRVLVEWLRDPSQELEFIADILN 194 (382)
T ss_dssp --------------------------------------------------------HHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred --------------------------------------------------------HHHHHHHHccCHHHHHHHHHHHHH
Confidence 456666678999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHhcccC
Q psy3014 276 FDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKK-MEDWKNA-----KVYFEKSMSEHR 349 (570)
Q Consensus 276 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A-----~~~~~~~~~~~~ 349 (570)
++|++..+|+.+|.++...|++++|+..|+++++++|++ ..+|..+|.++.. .|..++| +.+|++++.
T Consensus 195 ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~---~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~--- 268 (382)
T 2h6f_A 195 QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN---NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--- 268 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH---
T ss_pred hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---
Confidence 999999999999999999999999999999999999999 8999999999999 5554777 477888887
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-
Q psy3014 350 TPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNG--KYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA- 426 (570)
Q Consensus 350 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~- 426 (570)
.+|++..+|..+|.++...| ++++|+..+.++ +.+|+++.++..+|.+|..+|
T Consensus 269 -----------------------l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 269 -----------------------LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp -----------------------HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHH
T ss_pred -----------------------HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhc
Confidence 89999999999999999988 699999999998 999999999999999999985
Q ss_pred -------C-hHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHhC
Q psy3014 427 -------A-FDLGLKDCETC-LKLDPKFLKGWIRKGKILQGM 459 (570)
Q Consensus 427 -------~-~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~ 459 (570)
+ +++|+.+|+++ ++++|.....|..++..+..+
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 59999999999 999999999999999877643
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=8.7e-31 Score=247.42 Aligned_cols=107 Identities=13% Similarity=0.057 Sum_probs=90.9
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSA 88 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 88 (570)
.++..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 45667888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhhccCHHHHHHHHHHhhccCCCcHHH
Q psy3014 89 LSYLGRYKESISTYEEGLKLDPNNEQM 115 (570)
Q Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 115 (570)
+...|++++|+..|+++++.+|.+...
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~ 125 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQL 125 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHH
Confidence 888888888888888888888876543
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=8e-31 Score=247.67 Aligned_cols=96 Identities=15% Similarity=0.092 Sum_probs=87.6
Q ss_pred CcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q psy3014 44 NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123 (570)
Q Consensus 44 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 123 (570)
+...++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCcccccc
Q psy3014 124 NQEMNDMNRGDPFANL 139 (570)
Q Consensus 124 ~~~~~~~~~~~~~~~~ 139 (570)
...++...+...+.+.
T Consensus 100 ~~~~~~~~A~~~~~~~ 115 (327)
T 3cv0_A 100 TNEHNANAALASLRAW 115 (327)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 8877776666655544
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=251.81 Aligned_cols=328 Identities=15% Similarity=0.085 Sum_probs=239.9
Q ss_pred CCHHHHHHHHHHHHc----cCCC--CcchhhchhHHHhcccCHHHHHHHHhchhcc---------CCCChhHHhHHHHHH
Q psy3014 25 NNFIEAIEAYSEAIK----LDGT--NHILFSNRSAAFAKEGNYEKALEDAEKTISL---------KPDWPKGYSRKGSAL 89 (570)
Q Consensus 25 ~~~~~A~~~~~~al~----~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~ 89 (570)
++++.++..+++.+. ..+. .+..+..+|.++..+|++++|++.|++++++ +|....+|.++|.+|
T Consensus 25 ~~~~~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y 104 (472)
T 4g1t_A 25 MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVY 104 (472)
T ss_dssp TTTCCCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHH
Confidence 445555555554443 3222 3566788999999999999999999999876 566778899999999
Q ss_pred hhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHH
Q psy3014 90 SYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIK 169 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (570)
..+|++++|+.+|++++++.+......
T Consensus 105 ~~~g~~~~A~~~~~ka~~i~~~~~~~~----------------------------------------------------- 131 (472)
T 4g1t_A 105 YHMGRLSDVQIYVDKVKHVCEKFSSPY----------------------------------------------------- 131 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCSS-----------------------------------------------------
T ss_pred HHcCChHHHHHHHHHHHHHhHhccccc-----------------------------------------------------
Confidence 999999999999999987643210000
Q ss_pred HHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHH
Q psy3014 170 EIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKK 249 (570)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (570)
.+..+.+
T Consensus 132 -------------------------------------------------------------------------~~~~~~~ 138 (472)
T 4g1t_A 132 -------------------------------------------------------------------------RIESPEL 138 (472)
T ss_dssp -------------------------------------------------------------------------CCCCHHH
T ss_pred -------------------------------------------------------------------------chhhHHH
Confidence 0012334
Q ss_pred HHHHHHHHHH--ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---hcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 250 EKELGNEAYK--KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE---RKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 250 ~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
+..+|..+.. .+++++|+.+|+++++++|+++.++..+|.++.. .+++++|++.++++++++|++ ..++..+
T Consensus 139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~---~~~~~~l 215 (472)
T 4g1t_A 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN---QYLKVLL 215 (472)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC---HHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc---hHHHHHH
Confidence 4445554443 3457777777777777777777777777766543 355567777777777777777 6666666
Q ss_pred HHHHHH----cCCHHHHHHHHHHHhcccCC--------HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC-
Q psy3014 325 GNCYKK----MEDWKNAKVYFEKSMSEHRT--------PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKN- 391 (570)
Q Consensus 325 ~~~~~~----~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 391 (570)
|..+.. .|++++|..++++++...|. +.++...+++++|+..+++++..+|+++.++..+|.+|...
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~ 295 (472)
T 4g1t_A 216 ALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKV 295 (472)
T ss_dssp HHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 655443 35566777777777776655 23444556677777777777779999999999999887543
Q ss_pred ------------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHH---HHH
Q psy3014 392 ------------------GKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLK---GWI 450 (570)
Q Consensus 392 ------------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 450 (570)
+.+++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++..+|++.. .+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~ 375 (472)
T 4g1t_A 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHL 375 (472)
T ss_dssp HHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999987654 456
Q ss_pred HHHHH-HHhCCCHHHHHHHHHHHHhhCCCcHH
Q psy3014 451 RKGKI-LQGMQQQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 451 ~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~ 481 (570)
.+|.+ +...|++++|+.+|+++++++|++..
T Consensus 376 ~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~ 407 (472)
T 4g1t_A 376 RYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE 407 (472)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence 67765 46889999999999999988766544
No 25
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-28 Score=223.39 Aligned_cols=246 Identities=40% Similarity=0.664 Sum_probs=235.8
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh----hHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF----KLIAK 319 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~ 319 (570)
+..+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..++++++..|+. +....
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 4678999999999999999999999999999999 999999999999999999999999999999887754 22368
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHH
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVK 399 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 399 (570)
++..+|.++...|++++|+..|++++...+...+....+++++|+..+++++..+|..+.++..+|.++...|++++|+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 160 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK 160 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC---
Q psy3014 400 EYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD--- 476 (570)
Q Consensus 400 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--- 476 (570)
+|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++..+|++++|+.+|+++++++
T Consensus 161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 240 (258)
T 3uq3_A 161 AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV 240 (258)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---CCcHHHHHHHHHHH
Q psy3014 477 ---ASNAEAVEGYRQCS 490 (570)
Q Consensus 477 ---p~~~~~~~~l~~~~ 490 (570)
|++..++..++.++
T Consensus 241 ~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 241 NNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HTTTTHHHHHHHHHHTT
T ss_pred cCCCchHHHHHHHHHhh
Confidence 99999998888763
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=6.9e-28 Score=240.29 Aligned_cols=367 Identities=15% Similarity=0.094 Sum_probs=289.8
Q ss_pred HHhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCcchhhchhHHHhc----ccCHHHHHHHHhchhccCCCCh
Q psy3014 8 VYEVSLLKDKGNAALQ----ANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAK----EGNYEKALEDAEKTISLKPDWP 79 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 79 (570)
+.++++++.+|..++. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. +++
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 3478999999999999 89999999999999876 578999999999999 99999999999999875 578
Q ss_pred hHHhHHHHHHhh----ccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCC
Q psy3014 80 KGYSRKGSALSY----LGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRT 155 (570)
Q Consensus 80 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (570)
.+++.+|.+|.. .+++++|+.+|+++.+. +++.++..++.++.. +..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~-g~g-------------------------- 162 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFE-GDG-------------------------- 162 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH-TSS--------------------------
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc-CCC--------------------------
Confidence 999999999999 89999999999999875 578889999988865 100
Q ss_pred CCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 156 KPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEP 235 (570)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (570)
...++..++..+.. ..
T Consensus 163 ----~~~d~~~A~~~~~~--------------------a~---------------------------------------- 178 (490)
T 2xm6_A 163 ----VTRDYVMAREWYSK--------------------AA---------------------------------------- 178 (490)
T ss_dssp ----SCCCHHHHHHHHHH--------------------HH----------------------------------------
T ss_pred ----CCCCHHHHHHHHHH--------------------HH----------------------------------------
Confidence 00111111111111 00
Q ss_pred CCcccchhHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHH
Q psy3014 236 EDKNLTDEQRSAKKEKELGNEAYK----KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE----RKEYDQCIEQYIQK 307 (570)
Q Consensus 236 ~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~ 307 (570)
...++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+..|+++
T Consensus 179 -------~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 179 -------EQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp -------HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred -------HCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 00246778889999998 89999999999999875 578899999999987 88999999999999
Q ss_pred hhcccChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccCCH------HHHHHH-----HHHHHHHHHHHHHhc
Q psy3014 308 IENRADFKLIAKALQRIGNCYKK----MEDWKNAKVYFEKSMSEHRTP------EIRTLI-----SEMEKKIKEEEKKAY 372 (570)
Q Consensus 308 l~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~------~~~~~~-----~~~~~a~~~~~~~~~ 372 (570)
++.. + +.+++.+|.+|.. .+++++|+.+|+++.+..... .++... +++++|+..++++..
T Consensus 250 ~~~~--~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 250 AEQG--N---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp HTTT--C---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HHCC--C---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 8763 3 6788899999998 899999999999998753221 112222 467778888887766
Q ss_pred CChhhHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcChHHHHHHHHHHHhcCCCC
Q psy3014 373 IDPVKAEEAKERGNELFKNG---KYADAVKEYTEAINRNPDDPKYYSNRAACYTK----LAAFDLGLKDCETCLKLDPKF 445 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~ 445 (570)
. .++.+++.+|.++...| ++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .+
T Consensus 325 ~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~ 398 (490)
T 2xm6_A 325 Q--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GL 398 (490)
T ss_dssp T--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC
T ss_pred c--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CC
Confidence 5 35567888888888766 788888888888876 578888888888888 78888888888888875 35
Q ss_pred HHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHH
Q psy3014 446 LKGWIRKGKILQG----MQQQSKAIDAYEKALELDAS---NAEAVEGYRQCSI 491 (570)
Q Consensus 446 ~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~ 491 (570)
+.+++.+|.+|.. .+++++|+.+|+++++.+|+ ++.+...++.++.
T Consensus 399 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 399 SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 7888888888887 78888888888888888844 7777777666544
No 27
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.97 E-value=1.3e-28 Score=216.46 Aligned_cols=201 Identities=17% Similarity=0.194 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQR 323 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 323 (570)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++ ..++..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY---LGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHc-----------CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC
Q psy3014 324 IGNCYKKM-----------EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNG 392 (570)
Q Consensus 324 l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (570)
+|.++... |++++|+..|++++. .+|+++.++..+|.++...|
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--------------------------~~P~~~~~~~~lg~~~~~~g 132 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAER--------------------------VNPRYAPLHLQRGLVYALLG 132 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--------------------------hCcccHHHHHHHHHHHHHcC
Confidence 99999999 888888888888888 89999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy3014 393 KYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKA 472 (570)
Q Consensus 393 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 472 (570)
++++|+..|+++++++ +++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++
T Consensus 133 ~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 133 ERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp CHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred ChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999887
Q ss_pred Hh
Q psy3014 473 LE 474 (570)
Q Consensus 473 l~ 474 (570)
-.
T Consensus 212 ~~ 213 (217)
T 2pl2_A 212 HH 213 (217)
T ss_dssp --
T ss_pred hh
Confidence 53
No 28
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=2e-28 Score=224.59 Aligned_cols=183 Identities=16% Similarity=0.180 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q psy3014 283 FQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362 (570)
Q Consensus 283 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (570)
++..+|.++...|++++|+..++++++.+|++ ..++..+|.++...|++++|+..|++++.
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~---------------- 136 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQIR---------------- 136 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHGGGCC----------------
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHccCHHHHHHHHHHHhh----------------
Confidence 35555555555555555555555555555555 55666666666666666666666666666
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC---hHHHHHHHHHHH
Q psy3014 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAA---FDLGLKDCETCL 439 (570)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al 439 (570)
.+|.++.++..+|...+..+++++|+..|+++++.+|+++.++..+|.++...|+ +++|+..|++++
T Consensus 137 ----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 137 ----------PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp ----------SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred ----------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 5666666677777444445578888888888888888888888888888888888 888888888888
Q ss_pred hcC---CC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 440 KLD---PK-----FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 440 ~~~---p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
+.. |+ ...++..+|.++...|++++|+.+|+++++++|+++.++..++.+....+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 775 43 23578889999999999999999999999999999999988887765543
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.96 E-value=2.2e-27 Score=218.00 Aligned_cols=203 Identities=14% Similarity=0.105 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEF--DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIG 325 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~ 325 (570)
.++..++..+...+++++|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |++ ..++..+|
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~---~~~~~~l~ 137 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS---LECMAMTV 137 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS---HHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC---HHHHHHHH
Confidence 33445677777888899999999998875 599999999999999999999999999887 677 78899999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHH--HHHHHCCCHHHHHHHHHH
Q psy3014 326 NCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERG--NELFKNGKYADAVKEYTE 403 (570)
Q Consensus 326 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~ 403 (570)
.++..+|++++|+..|++++. .+|+........+ .++...|++++|+.+|++
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~--------------------------~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQD--------------------------QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHh--------------------------hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999999999999999988 5666554443333 334456899999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhhCCCcHHH
Q psy3014 404 AINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK-AIDAYEKALELDASNAEA 482 (570)
Q Consensus 404 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~p~~~~~ 482 (570)
+++..|+++.+++++|.++...|++++|+..|++++..+|+++.++.++|.++...|++.+ +..+++++++++|+++.+
T Consensus 192 ~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 9999999999999999999999999999999999999999999999999999999999876 568899999999999887
Q ss_pred HH
Q psy3014 483 VE 484 (570)
Q Consensus 483 ~~ 484 (570)
..
T Consensus 272 ~d 273 (291)
T 3mkr_A 272 KE 273 (291)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.96 E-value=4e-27 Score=237.21 Aligned_cols=419 Identities=10% Similarity=0.018 Sum_probs=293.1
Q ss_pred hhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHH
Q psy3014 3 NLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGY 82 (570)
Q Consensus 3 ~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 82 (570)
.+...|.++..|..++.. ...|++++|...|++++...|.++.+|..++..+...|++++|...|++++...| ++..|
T Consensus 5 al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw 82 (530)
T 2ooe_A 5 KLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLW 82 (530)
T ss_dssp HHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHH
T ss_pred HhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHH
Confidence 356778899999999984 7899999999999999999999999999999999999999999999999999999 57788
Q ss_pred hHHHH-HHhhccCHHHHHH----HHHHhhcc---CCCcHHHHHHHHHHHHHh---------hhccCCCccccccCCCchH
Q psy3014 83 SRKGS-ALSYLGRYKESIS----TYEEGLKL---DPNNEQMKEAIKDVRNQE---------MNDMNRGDPFANLFSDPNI 145 (570)
Q Consensus 83 ~~la~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 145 (570)
..++. +....|++++|.+ .|++++.. +|.+..+|...+.+.... ++...+...+.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~---- 158 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV---- 158 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh----
Confidence 88885 4456688877665 78887653 566777887776665431 111111111111110
Q ss_pred HHHhhhCCCCCCCCCChHHHHHHHHHhh--CchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCC
Q psy3014 146 FVQLQLDPRTKPFLSDPSYVQMIKEIQK--DPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKA 223 (570)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (570)
.|.. ....+......+.. +.......+... ...+....... ..
T Consensus 159 ------~P~~----~~~~~~~~~~~~e~~~~~~~~~~~l~~~--~~~~~~A~~~~-----------------------~~ 203 (530)
T 2ooe_A 159 ------NPMI----NIEQLWRDYNKYEEGINIHLAKKMIEDR--SRDYMNARRVA-----------------------KE 203 (530)
T ss_dssp ------SCCT----THHHHHHHHHHHHHHHCHHHHHHHHHTT--HHHHHHHHHHH-----------------------HH
T ss_pred ------chhh----hHHHHHHHHHHHHHhhchhHHHHHHHHh--hHHHHHHHHHH-----------------------HH
Confidence 1100 00000000000000 000000000000 00000000000 00
Q ss_pred CCCCCCCCCCCCCCcc---cc-----hhHHHHHHHHHHHHHHHHc----cC----HHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 224 PSPPPAKKPAEPEDKN---LT-----DEQRSAKKEKELGNEAYKK----KN----FEEALAHYNKAVEFDPTDITFQNNI 287 (570)
Q Consensus 224 ~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~la~~~~~~----~~----~~~A~~~~~~al~~~p~~~~~~~~l 287 (570)
. ......+... +. ........|.......... ++ ...|+..|++++..+|.++.+|+.+
T Consensus 204 ~-----~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~ 278 (530)
T 2ooe_A 204 Y-----ETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEA 278 (530)
T ss_dssp H-----HHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred H-----HHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 0 0000000000 00 0012233443333222221 22 2478889999999999999999999
Q ss_pred HHHHHH-------hcCHH-------HHHHHHHHHhh-cccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHH
Q psy3014 288 AAVYFE-------RKEYD-------QCIEQYIQKIE-NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE 352 (570)
Q Consensus 288 a~~~~~-------~~~~~-------~A~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 352 (570)
|.++.. .|+++ +|+..|+++++ ..|++ ..+|..+|.++...|++++|...|++++.
T Consensus 279 ~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~---~~l~~~~~~~~~~~g~~~~A~~~~~~al~------ 349 (530)
T 2ooe_A 279 AQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLA------ 349 (530)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------
T ss_pred HHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhC------
Confidence 999886 68876 89999999997 78988 88999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhhH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhcChHH
Q psy3014 353 IRTLISEMEKKIKEEEKKAYIDPVKA-EEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAAC-YTKLAAFDL 430 (570)
Q Consensus 353 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~~~ 430 (570)
..|.++ .+|..+|.++.+.|++++|...|+++++..|.....+...+.+ +...|++++
T Consensus 350 --------------------~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 350 --------------------IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp --------------------SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred --------------------ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhH
Confidence 677664 5899999999999999999999999999988887777776665 346899999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHhcCC
Q psy3014 431 GLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE----AVEGYRQCSIAVSSN 496 (570)
Q Consensus 431 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~ 496 (570)
|...|+++++.+|+++.+|..+|.++...|+.++|...|++++...|.++. +|..+.......|+.
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999999999999998776654 888888888888863
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=3.6e-28 Score=222.92 Aligned_cols=255 Identities=17% Similarity=0.207 Sum_probs=218.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCCh----hHHhHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWP----KGYSRK 85 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l 85 (570)
+++.++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++. .|.++ .++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999 55444 348999
Q ss_pred HHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHH
Q psy3014 86 GSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYV 165 (570)
Q Consensus 86 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (570)
|.++...|++++|+..|+++++.+|++..++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------------------------------------------- 111 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMY------------------------------------------------- 111 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH-------------------------------------------------
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHH-------------------------------------------------
Confidence 9999999999999999999999998765543
Q ss_pred HHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHH
Q psy3014 166 QMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQR 245 (570)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (570)
T Consensus 112 -------------------------------------------------------------------------------- 111 (272)
T 3u4t_A 112 -------------------------------------------------------------------------------- 111 (272)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIG 325 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~ 325 (570)
..+|.++...|++++|+.+|+++++.+|.++.++..+|...+..+++++|+..++++++..|++ ..++..+|
T Consensus 112 -----~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~ 183 (272)
T 3u4t_A 112 -----GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI---YIGYLWRA 183 (272)
T ss_dssp -----HHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHH
T ss_pred -----HHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc---hHHHHHHH
Confidence 4577788889999999999999999999999999999955555669999999999999999999 89999999
Q ss_pred HHHHHcCC---HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh-----hHHHHHHHHHHHHHCCCHHHH
Q psy3014 326 NCYKKMED---WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV-----KAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 326 ~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~A 397 (570)
.++...|+ +++|+..|++++.... ..|. ...++..+|.++...|++++|
T Consensus 184 ~~~~~~~~~~~~~~A~~~~~~a~~~~~-----------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 184 RANAAQDPDTKQGLAKPYYEKLIEVCA-----------------------PGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHSTTCSSCTTHHHHHHHHHHHG-----------------------GGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCcchhhHHHHHHHHHHHHHHh-----------------------cccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999 8899999999987421 1122 346788888888888888888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKL 425 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~ 425 (570)
+.+|+++++++|+++.++-.++.+....
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 8888888888888888888777665543
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.96 E-value=2.1e-27 Score=218.15 Aligned_cols=277 Identities=9% Similarity=0.024 Sum_probs=239.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCC-cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHH
Q psy3014 18 GNAALQANNFIEAIEAYSEAIKLDGTN-HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYK 96 (570)
Q Consensus 18 g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 96 (570)
....+..|+|.+|+..+++....+|++ ......++.+|+.+|++++|+..++.. +|....++..++..+...|+++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHH
Confidence 456788999999999999998888887 467788999999999999999999773 6667889999999999999999
Q ss_pred HHHHHHHHhhcc--CCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhC
Q psy3014 97 ESISTYEEGLKL--DPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKD 174 (570)
Q Consensus 97 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (570)
+|++.+++++.. +|+++.++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~---------------------------------------------------------- 104 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFL---------------------------------------------------------- 104 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHH----------------------------------------------------------
T ss_pred HHHHHHHHHHhcccCCCCHHHH----------------------------------------------------------
Confidence 999999998865 58776544
Q ss_pred chhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHH
Q psy3014 175 PSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELG 254 (570)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 254 (570)
+.+|
T Consensus 105 ----------------------------------------------------------------------------~~la 108 (291)
T 3mkr_A 105 ----------------------------------------------------------------------------LMAA 108 (291)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 3567
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHH--HHHHHcC
Q psy3014 255 NEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIG--NCYKKME 332 (570)
Q Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~ 332 (570)
.++...|++++|+..|++ |.++.++..+|.++..+|++++|+..++++++.+|++ .......+ .++...|
T Consensus 109 ~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~---~~~~l~~a~~~l~~~~~ 180 (291)
T 3mkr_A 109 SIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA---TLTQLATAWVSLAAGGE 180 (291)
T ss_dssp HHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc---HHHHHHHHHHHHHhCch
Confidence 778889999999999998 8999999999999999999999999999999999987 43333333 3334558
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDP 412 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 412 (570)
++++|+..|++++. ..|.++.++..+|.++...|++++|+..|++++..+|+++
T Consensus 181 ~~~eA~~~~~~~l~--------------------------~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 181 KLQDAYYIFQEMAD--------------------------KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HHHHHHHHHHHHHH--------------------------HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999998 7889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcChHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q psy3014 413 KYYSNRAACYTKLAAFDL-GLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAY 469 (570)
Q Consensus 413 ~~~~~la~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (570)
.++.++|.++...|++++ +..+++++++++|+++.+. .+..+.+.|+++..-|
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 999999999999999976 5789999999999999765 3455556666665554
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.6e-28 Score=220.28 Aligned_cols=102 Identities=29% Similarity=0.419 Sum_probs=73.4
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCC-------hh
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW-------PK 80 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~ 80 (570)
+..++.+..+|..++..|++++|+..|++++..+ .++.++..+|.++...|++++|+..++++++..|++ +.
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 3467788888888888888888888888888877 777777777777777777777777777777777665 45
Q ss_pred HHhHHHHHHhhccCHHHHHHHHHHhhccCC
Q psy3014 81 GYSRKGSALSYLGRYKESISTYEEGLKLDP 110 (570)
Q Consensus 81 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 110 (570)
++..+|.++...|++++|+..|+++++++|
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 110 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHR 110 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCc
Confidence 556666666666666666666665555544
No 34
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.96 E-value=5.2e-29 Score=242.88 Aligned_cols=307 Identities=16% Similarity=0.219 Sum_probs=223.7
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc----chhhchhHHHhcccCHHHHHHHHhchhcc------CCC
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH----ILFSNRSAAFAKEGNYEKALEDAEKTISL------KPD 77 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 77 (570)
...+..++.+|..++..|++++|+..|++++...|.++ .++..+|.++...|++++|+..+++++.+ .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44677899999999999999999999999999999984 67889999999999999999999999877 455
Q ss_pred ChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCC
Q psy3014 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP 157 (570)
Q Consensus 78 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (570)
...++..+|.++...|++++|+..+++++++.|....
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------------------------------- 122 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND------------------------------------------- 122 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-------------------------------------------
Confidence 6789999999999999999999999999987553211
Q ss_pred CCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 158 FLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPED 237 (570)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (570)
T Consensus 123 -------------------------------------------------------------------------------- 122 (406)
T 3sf4_A 123 -------------------------------------------------------------------------------- 122 (406)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhHHHHHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhc------CCCCHHHHHHHHHHH
Q psy3014 238 KNLTDEQRSAKKEKELGNEAYKKKN--------------------FEEALAHYNKAVEF------DPTDITFQNNIAAVY 291 (570)
Q Consensus 238 ~~~~~~~~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~------~p~~~~~~~~la~~~ 291 (570)
.+..+.++..+|.++...|+ +++|+.++++++.+ .|....++..+|.++
T Consensus 123 -----~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 197 (406)
T 3sf4_A 123 -----KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTH 197 (406)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 01345567778888888888 88999998888876 233355777888888
Q ss_pred HHhcCHHHHHHHHHHHhhcccCh---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Q psy3014 292 FERKEYDQCIEQYIQKIENRADF---KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEE 368 (570)
Q Consensus 292 ~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 368 (570)
...|++++|+..++++++..+.. .....++..+|.++...|++++|+.++++++...+..
T Consensus 198 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------------- 260 (406)
T 3sf4_A 198 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL----------------- 260 (406)
T ss_dssp HHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------------
T ss_pred HHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC-----------------
Confidence 88888888888888887664432 2334577777777777777777777777777621100
Q ss_pred HHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy3014 369 KKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD------PKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 442 (570)
...+....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++.+.
T Consensus 261 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 261 ---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ---cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 0112225566667777777777777777777776654332 4456666666666666666666666666552
Q ss_pred C------CCHHHHHHHHHHHHhCCCH
Q psy3014 443 P------KFLKGWIRKGKILQGMQQQ 462 (570)
Q Consensus 443 p------~~~~~~~~l~~~~~~~g~~ 462 (570)
+ ....++..+|.++...|+.
T Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 338 REVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 2 2244555566666555554
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=3.5e-28 Score=213.79 Aligned_cols=202 Identities=14% Similarity=0.156 Sum_probs=176.4
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
+|.++..++.+|.+++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc-----------cCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCC
Q psy3014 87 SALSYL-----------GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRT 155 (570)
Q Consensus 87 ~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (570)
.++... |++++|+..|+++++++|++..++.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~-------------------------------------- 122 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHL-------------------------------------- 122 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH--------------------------------------
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHH--------------------------------------
Confidence 999999 9999999999999999998766544
Q ss_pred CCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 156 KPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEP 235 (570)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (570)
T Consensus 123 -------------------------------------------------------------------------------- 122 (217)
T 2pl2_A 123 -------------------------------------------------------------------------------- 122 (217)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChh
Q psy3014 236 EDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFK 315 (570)
Q Consensus 236 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 315 (570)
.+|.++...|++++|+..|+++++++ +++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 123 ----------------~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~- 184 (217)
T 2pl2_A 123 ----------------QRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD- 184 (217)
T ss_dssp ----------------HHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-
T ss_pred ----------------HHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Confidence 46777788999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 316 LIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
..++..+|.++...|++++|+..|+++-.
T Consensus 185 --~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 185 --LDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp --HHHHHHHHHHHTC----------------
T ss_pred --hHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 89999999999999999999999988753
No 36
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.96 E-value=1.3e-27 Score=233.00 Aligned_cols=306 Identities=16% Similarity=0.210 Sum_probs=260.3
Q ss_pred CcchhhchhHHHhcccCHHHHHHHHhchhccCCCCh----hHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHH
Q psy3014 44 NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWP----KGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAI 119 (570)
Q Consensus 44 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 119 (570)
....+..+|.++...|++++|+..|++++...|+++ .++..+|.++...|++++|+..|++++.+.+..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------- 80 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI------- 80 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-------
Confidence 455678999999999999999999999999999884 678999999999999999999999998653210
Q ss_pred HHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcc
Q psy3014 120 KDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNM 199 (570)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (570)
T Consensus 81 -------------------------------------------------------------------------------- 80 (406)
T 3sf4_A 81 -------------------------------------------------------------------------------- 80 (406)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q psy3014 200 SSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT 279 (570)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 279 (570)
...+..+.++..+|.++...|++++|+.++++++...|.
T Consensus 81 -----------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 119 (406)
T 3sf4_A 81 -----------------------------------------GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 119 (406)
T ss_dssp -----------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 012355677888999999999999999999999998664
Q ss_pred C------HHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHhhcc---cChhHHHHHHHHHHHHHHH
Q psy3014 280 D------ITFQNNIAAVYFERKE--------------------YDQCIEQYIQKIENR---ADFKLIAKALQRIGNCYKK 330 (570)
Q Consensus 280 ~------~~~~~~la~~~~~~~~--------------------~~~A~~~~~~~l~~~---~~~~~~~~~~~~l~~~~~~ 330 (570)
. ..++..+|.++...|+ +++|+..+++++... ++.+....++..+|.++..
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 199 (406)
T 3sf4_A 120 LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL 199 (406)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 3 5588999999999999 999999999998652 2334457899999999999
Q ss_pred cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q psy3014 331 MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD 410 (570)
Q Consensus 331 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 410 (570)
.|++++|+.++++++...+.. ...+....++..+|.++...|++++|+.++++++...|.
T Consensus 200 ~g~~~~A~~~~~~al~~~~~~--------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 259 (406)
T 3sf4_A 200 LGNFRDAVIAHEQRLLIAKEF--------------------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 259 (406)
T ss_dssp HTBHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhc--------------------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 999999999999998732210 012334568999999999999999999999999988765
Q ss_pred C------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--
Q psy3014 411 D------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF------LKGWIRKGKILQGMQQQSKAIDAYEKALELD-- 476 (570)
Q Consensus 411 ~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 476 (570)
. ..++..+|.++...|++++|+..+++++.+.+.. ..++..+|.++..+|++++|+.+|++++++.
T Consensus 260 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 260 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 5 6789999999999999999999999999885543 6688999999999999999999999999984
Q ss_pred ----CCcHHHHHHHHHHHHHhcCCH
Q psy3014 477 ----ASNAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 477 ----p~~~~~~~~l~~~~~~~~~~~ 497 (570)
|....++..++.++..+|+..
T Consensus 340 ~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 340 VGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hcCCcchhHHHHHHHHHHHHhhHhH
Confidence 445788999999999999853
No 37
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.95 E-value=2.2e-26 Score=207.14 Aligned_cols=221 Identities=19% Similarity=0.203 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
..+..++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|++ ..++..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l 97 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA---ATAYYGA 97 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc---hHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
|.++...|++++|+..+++++. ..|.++.++..+|.++...|++++|+..++++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALR--------------------------AGMENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--------------------------HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999999999998 78888899999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy3014 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484 (570)
Q Consensus 405 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 484 (570)
++..|+++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+.+|+++++++|+++.++.
T Consensus 152 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 231 (243)
T 2q7f_A 152 VELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALH 231 (243)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q psy3014 485 GYRQCSIAVS 494 (570)
Q Consensus 485 ~l~~~~~~~~ 494 (570)
.++.+....+
T Consensus 232 ~~~~l~~~~~ 241 (243)
T 2q7f_A 232 AKKLLGHHHH 241 (243)
T ss_dssp HHTC------
T ss_pred HHHHHHhhcc
Confidence 8887765544
No 38
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=7.4e-25 Score=218.36 Aligned_cols=357 Identities=13% Similarity=0.044 Sum_probs=291.0
Q ss_pred HhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCcchhhchhHHHhc----ccCHHHHHHHHhchhccCCCChh
Q psy3014 9 YEVSLLKDKGNAALQ----ANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAK----EGNYEKALEDAEKTISLKPDWPK 80 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 80 (570)
.++.+++.+|..+.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+..|+++... +++.
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 148 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDS 148 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 467899999999999 99999999999999875 578999999999998 89999999999999775 5789
Q ss_pred HHhHHHHHHhh----ccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCC
Q psy3014 81 GYSRKGSALSY----LGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK 156 (570)
Q Consensus 81 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (570)
+++.+|.+|.. .+++++|+.+|+++++. +++.++..++.++..-..
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g---------------------------- 198 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLG---------------------------- 198 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS----------------------------
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC----------------------------
Confidence 99999999998 89999999999999986 578899999988876100
Q ss_pred CCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 157 PFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPE 236 (570)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (570)
...++..++..+.. ..
T Consensus 199 ---~~~~~~~A~~~~~~--------------------a~----------------------------------------- 214 (490)
T 2xm6_A 199 ---VERNDAISAQWYRK--------------------SA----------------------------------------- 214 (490)
T ss_dssp ---SCCCHHHHHHHHHH--------------------HH-----------------------------------------
T ss_pred ---CCcCHHHHHHHHHH--------------------HH-----------------------------------------
Confidence 00111111111111 00
Q ss_pred CcccchhHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHh
Q psy3014 237 DKNLTDEQRSAKKEKELGNEAYK----KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE----RKEYDQCIEQYIQKI 308 (570)
Q Consensus 237 ~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l 308 (570)
...++.+++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+..|+++.
T Consensus 215 ------~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~ 286 (490)
T 2xm6_A 215 ------TSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA 286 (490)
T ss_dssp ------HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred ------HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Confidence 00235678889999987 89999999999999875 578899999999998 899999999999998
Q ss_pred hcccChhHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhcccCCHHHHHH----------HHHHHHHHHHHHHHhcC
Q psy3014 309 ENRADFKLIAKALQRIGNCYKKM-----EDWKNAKVYFEKSMSEHRTPEIRTL----------ISEMEKKIKEEEKKAYI 373 (570)
Q Consensus 309 ~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~----------~~~~~~a~~~~~~~~~~ 373 (570)
+. ++ +.+++.+|.+|... +++++|+.+|+++.+..+. ..... ..++++|+..+++++..
T Consensus 287 ~~--~~---~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~-~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 287 EQ--GN---SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA-TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp TT--TC---HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred Hc--CC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 76 34 67889999999988 8999999999999886543 22222 23778999999999876
Q ss_pred ChhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcChHHHHHHHHHHHhcCCC-
Q psy3014 374 DPVKAEEAKERGNELFK----NGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK----LAAFDLGLKDCETCLKLDPK- 444 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~- 444 (570)
.++.+++.+|.++.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++..|+
T Consensus 361 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 436 (490)
T 2xm6_A 361 --GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNL 436 (490)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCH
T ss_pred --CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 578999999999999 89999999999999986 479999999999999 89999999999999999954
Q ss_pred --CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 445 --FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 445 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
++.+...+|.++.. +...|....++.++..|++..+.
T Consensus 437 ~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~~~~~ 475 (490)
T 2xm6_A 437 FGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPEAWAR 475 (490)
T ss_dssp HHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888988887664 45666666666666667665554
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.95 E-value=1.1e-25 Score=220.58 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCH---HHHHHHHhchhccCCCChhHHhHHHHHHhh
Q psy3014 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNY---EKALEDAEKTISLKPDWPKGYSRKGSALSY 91 (570)
Q Consensus 15 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 91 (570)
..+|..++..|++++|+..|+++.+. .++.+++.+|.+|...|++ ++|+..|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 55799999999999999999999765 5789999999999999999 9999999999976 77899999997766
Q ss_pred cc-----CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 92 LG-----RYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 92 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
.| ++++|+.+|+++++. +++.++..++.++..
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~ 118 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQ 118 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHh
Confidence 66 889999999999984 455588889988877
No 40
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.95 E-value=1.3e-26 Score=219.55 Aligned_cols=287 Identities=17% Similarity=0.227 Sum_probs=204.4
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----cchhhchhHHHhcccCHHHHHHHHhchhcc------CCCC
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN----HILFSNRSAAFAKEGNYEKALEDAEKTISL------KPDW 78 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 78 (570)
.+...++..|..++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++.. .|..
T Consensus 3 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 3 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 457789999999999999999999999999999998 467889999999999999999999999887 4556
Q ss_pred hhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCC
Q psy3014 79 PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF 158 (570)
Q Consensus 79 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (570)
..++..+|.++...|++++|+..+++++++.|....
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------------------------------- 118 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-------------------------------------------- 118 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------------------------------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--------------------------------------------
Confidence 788999999999999999999999999876543211
Q ss_pred CCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy3014 159 LSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDK 238 (570)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (570)
T Consensus 119 -------------------------------------------------------------------------------- 118 (338)
T 3ro2_A 119 -------------------------------------------------------------------------------- 118 (338)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhHHHHHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhc------CCCCHHHHHHHHHHHH
Q psy3014 239 NLTDEQRSAKKEKELGNEAYKKKN--------------------FEEALAHYNKAVEF------DPTDITFQNNIAAVYF 292 (570)
Q Consensus 239 ~~~~~~~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~------~p~~~~~~~~la~~~~ 292 (570)
.+..+.++..+|.++...|+ +++|+..+++++.. .|....++..+|.++.
T Consensus 119 ----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (338)
T 3ro2_A 119 ----KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHY 194 (338)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ----chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 01334566678888888888 88888888888765 2233456777777777
Q ss_pred HhcCHHHHHHHHHHHhhcccC---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Q psy3014 293 ERKEYDQCIEQYIQKIENRAD---FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEK 369 (570)
Q Consensus 293 ~~~~~~~A~~~~~~~l~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 369 (570)
..|++++|+..++++++..+. ......++..+|.++...|++++|+.++++++...+..
T Consensus 195 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------------ 256 (338)
T 3ro2_A 195 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL------------------ 256 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT------------------
T ss_pred HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh------------------
Confidence 788888888877777765433 22334567777777777777777777777776521100
Q ss_pred HhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Q psy3014 370 KAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443 (570)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 443 (570)
...+....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|..++++++.+.+
T Consensus 257 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 257 --KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred --cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 0112224556666666666666666666666666553321 33455555555555555555555555555544
No 41
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.95 E-value=1e-26 Score=226.99 Aligned_cols=284 Identities=17% Similarity=0.246 Sum_probs=200.3
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc----chhhchhHHHhcccCHHHHHHHHhchhcc------CCC
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH----ILFSNRSAAFAKEGNYEKALEDAEKTISL------KPD 77 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 77 (570)
+..+..++.+|..++..|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..+++++.+ .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 56788899999999999999999999999999999986 57899999999999999999999999988 577
Q ss_pred ChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCC
Q psy3014 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP 157 (570)
Q Consensus 78 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (570)
...++..+|.++...|++++|+..|++++++.+...
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------------------------- 160 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG-------------------------------------------- 160 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------------------------------------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--------------------------------------------
Confidence 889999999999999999999999999987532110
Q ss_pred CCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 158 FLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPED 237 (570)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (570)
T Consensus 161 -------------------------------------------------------------------------------- 160 (411)
T 4a1s_A 161 -------------------------------------------------------------------------------- 160 (411)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhHHHHHHHHHHHHHHHHccC-----------------HHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHh
Q psy3014 238 KNLTDEQRSAKKEKELGNEAYKKKN-----------------FEEALAHYNKAVEFD------PTDITFQNNIAAVYFER 294 (570)
Q Consensus 238 ~~~~~~~~~~~~~~~la~~~~~~~~-----------------~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~ 294 (570)
..+..+.++..+|.++...|+ +++|+.++++++.+. |....++..+|.++...
T Consensus 161 ----~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 236 (411)
T 4a1s_A 161 ----DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL 236 (411)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred ----chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 012456677788888888888 778887777776653 22234555566666666
Q ss_pred cCHHHHHHHHHHHhhcccCh---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHh
Q psy3014 295 KEYDQCIEQYIQKIENRADF---KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371 (570)
Q Consensus 295 ~~~~~A~~~~~~~l~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 371 (570)
|++++|+..++++++..+.. .....++..+|.++...|++++|+.++++++
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------------------------- 290 (411)
T 4a1s_A 237 GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL-------------------------- 290 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--------------------------
T ss_pred CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH--------------------------
Confidence 66666666666665544322 1122344555555555555555555555544
Q ss_pred cCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC-
Q psy3014 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK- 444 (570)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~- 444 (570)
...+.. ..++..+|.++...|++++|+.++++++.+.+.
T Consensus 291 ----------------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 291 ----------------------------------ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp ----------------------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 443321 345555666666666666666666666554332
Q ss_pred -----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 445 -----FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 445 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
...++..+|.++..+|++++|+.+|++++++.+..
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 23466777777777777777777777777777653
No 42
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.95 E-value=1.5e-26 Score=225.81 Aligned_cols=227 Identities=14% Similarity=0.175 Sum_probs=161.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccc---ChhHHHHHHHH
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEF------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA---DFKLIAKALQR 323 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~~~~ 323 (570)
+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+..+++++...+ +.+....++..
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 171 (411)
T 4a1s_A 92 LGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYN 171 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 444444555555555555555544 555555555555555555555555555555554411 12223666677
Q ss_pred HHHHHHHcCC-----------------HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q psy3014 324 IGNCYKKMED-----------------WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGN 386 (570)
Q Consensus 324 l~~~~~~~~~-----------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 386 (570)
+|.++...|+ +++|+.++++++...+. ....+....++..+|.
T Consensus 172 l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~la~ 231 (411)
T 4a1s_A 172 LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD--------------------LGDRGAQGRACGNLGN 231 (411)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHH
Confidence 7777777777 77777777777662211 0123556678888888
Q ss_pred HHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC------HHHHHHHHH
Q psy3014 387 ELFKNGKYADAVKEYTEAINRNPDD------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF------LKGWIRKGK 454 (570)
Q Consensus 387 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~ 454 (570)
++...|++++|+.+++++++..|.. ..++..+|.++...|++++|+..+++++...|.. ..++..+|.
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGN 311 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888888888776543 2388999999999999999999999999987644 678899999
Q ss_pred HHHhCCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHhcCCHHH
Q psy3014 455 ILQGMQQQSKAIDAYEKALELDASN------AEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 455 ~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~e~ 499 (570)
++..+|++++|+.+|++++++.++. ..++..++.++..+|+..++
T Consensus 312 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 362 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA 362 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999986543 55899999999999996553
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.94 E-value=2e-24 Score=195.37 Aligned_cols=217 Identities=15% Similarity=0.124 Sum_probs=206.3
Q ss_pred hHHH-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHH
Q psy3014 243 EQRS-AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKAL 321 (570)
Q Consensus 243 ~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 321 (570)
+|.. +.+++.+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++..|++ ..++
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~ 108 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN---ARVL 108 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---HHHH
Confidence 3454 89999999999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Q psy3014 322 QRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEY 401 (570)
Q Consensus 322 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 401 (570)
..+|.++...|++++|+.++++++. .+ ..|..+.++..+|.++...|++++|+.+|
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~-~~-----------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQ-DT-----------------------LYPERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTT-CT-----------------------TCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh-Cc-----------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999987 21 46778899999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH
Q psy3014 402 TEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 402 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 481 (570)
+++++..|.++.++..+|.++...|++++|+..+++++...|.+..++..++.++...|++++|..+++++++.+|+++.
T Consensus 165 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 165 EKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHH
Q psy3014 482 AVEGY 486 (570)
Q Consensus 482 ~~~~l 486 (570)
++..+
T Consensus 245 ~~~~l 249 (252)
T 2ho1_A 245 YQEFQ 249 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.94 E-value=2.7e-24 Score=190.88 Aligned_cols=218 Identities=14% Similarity=0.088 Sum_probs=207.3
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
.|..+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|++ ..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~ 80 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS---AEINN 80 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHH
Confidence 358899999999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Q psy3014 323 RIGNCYKKM-EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEY 401 (570)
Q Consensus 323 ~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 401 (570)
.+|.++... |++++|+..+++++. .+ ..|....++..+|.++...|++++|+.++
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~-~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 136 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALA-DP-----------------------TYPTPYIANLNKGICSAKQGQFGLAEAYL 136 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHT-ST-----------------------TCSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHc-Cc-----------------------CCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999 999999999999997 22 46777899999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 402 TEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP-KFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 402 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
+++++..|.++.++..+|.++...|++++|+..+++++...| .+...+..++.++...|++++|..+++.+.+.+|+++
T Consensus 137 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 137 KRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy3014 481 EAVEGYR 487 (570)
Q Consensus 481 ~~~~~l~ 487 (570)
.+...+.
T Consensus 217 ~~~~~l~ 223 (225)
T 2vq2_A 217 ELQTVLT 223 (225)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9876653
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.94 E-value=3.2e-25 Score=190.01 Aligned_cols=174 Identities=19% Similarity=0.292 Sum_probs=132.0
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHH
Q psy3014 279 TDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLIS 358 (570)
Q Consensus 279 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 358 (570)
+++.+|+.+|.++...|++++|+..|+++++.+|++ +.++..+|.++...|++++|+..+.+++.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~a~~~~~~~~~------------ 67 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN---VETLLKLGKTYMDIGLPNDAIESLKKFVV------------ 67 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHh------------
Confidence 455667777777777777777777777777777777 67777777777777777777777777776
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHH
Q psy3014 359 EMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETC 438 (570)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 438 (570)
..|..+.++..+|.++...++++.|...+.+++..+|+++.++..+|.++...|++++|+..|+++
T Consensus 68 --------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 133 (184)
T 3vtx_A 68 --------------LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKT 133 (184)
T ss_dssp --------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------------cCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 666677777777777777777777777777777777777777888888888888888888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH
Q psy3014 439 LKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 439 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 481 (570)
++++|+++.+++.+|.+|..+|++++|+.+|+++++++|+++.
T Consensus 134 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 134 ISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 8888888888888888888888888888888888888777643
No 46
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=1.7e-24 Score=218.09 Aligned_cols=397 Identities=12% Similarity=0.065 Sum_probs=287.1
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhH-HHhcccCHHHHHH----HHhchhc---cC
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSA-AFAKEGNYEKALE----DAEKTIS---LK 75 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~---~~ 75 (570)
+...|.++..|...|......|++++|...|++++...| +...|..++. +....|++++|.+ .|++++. .+
T Consensus 39 l~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~ 117 (530)
T 2ooe_A 39 VAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGME 117 (530)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTS
T ss_pred HHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCC
Confidence 345688899999999999999999999999999999999 5778888775 4445677777665 7777765 46
Q ss_pred CCChhHHhHHHHHHhh---------ccCHHHHHHHHHHhhccCCCcH--HHHHHHHHHHHHhhhc------cCCCccccc
Q psy3014 76 PDWPKGYSRKGSALSY---------LGRYKESISTYEEGLKLDPNNE--QMKEAIKDVRNQEMND------MNRGDPFAN 138 (570)
Q Consensus 76 p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~------~~~~~~~~~ 138 (570)
|++...|...+..... .|++++|...|+++++ .|.+. ..+..........+.. ......+..
T Consensus 118 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~ 196 (530)
T 2ooe_A 118 IMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMN 196 (530)
T ss_dssp TTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHH
T ss_pred cccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHH
Confidence 6778888888887765 7999999999999999 57543 3333322221110000 000000000
Q ss_pred cC---CC-chHHHHhhhCCC-CCCCCC------ChHHHHHHHHHhhCchhHHhhccCc-----cHHHHHHHHhcCcccCC
Q psy3014 139 LF---SD-PNIFVQLQLDPR-TKPFLS------DPSYVQMIKEIQKDPSLMTTKLKDP-----RMMTTLSVLLGVNMSST 202 (570)
Q Consensus 139 ~~---~~-~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 202 (570)
+. .. ..+...+..... ...... ...+...+.....++. .+.+. +....+.
T Consensus 197 A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~----~~~~~~~~~~~a~~~y~---------- 262 (530)
T 2ooe_A 197 ARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL----RTEDQTLITKRVMFAYE---------- 262 (530)
T ss_dssp HHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS----CCSCSHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc----cCCcchhHHHHHHHHHH----------
Confidence 00 00 000000100000 000000 0112222211111110 00011 1112222
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHH-------ccCHH-------HHHH
Q psy3014 203 MGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYK-------KKNFE-------EALA 268 (570)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~~~~~-------~A~~ 268 (570)
..+...|..+.+|+.+|..+.. .|+++ +|+.
T Consensus 263 -----------------------------------~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 263 -----------------------------------QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp -----------------------------------HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred -----------------------------------HHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 2233355678999999999986 79987 9999
Q ss_pred HHHHHHh-cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy3014 269 HYNKAVE-FDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSE 347 (570)
Q Consensus 269 ~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 347 (570)
.|+++++ ..|++..+|..+|.++...|++++|...|+++++..|.+. ..+|..+|.++.+.|++++|+..|+++++
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~- 384 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKARE- 384 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 9999997 8999999999999999999999999999999999999862 25899999999999999999999999998
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy3014 348 HRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNE-LFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA 426 (570)
Q Consensus 348 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 426 (570)
..|.....+...+.+ +...|++++|..+|+++++..|+++.+|..++.++...|
T Consensus 385 -------------------------~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g 439 (530)
T 2ooe_A 385 -------------------------DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 439 (530)
T ss_dssp -------------------------CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred -------------------------ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC
Confidence 566666666666655 346999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 427 AFDLGLKDCETCLKLDPKFLK----GWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 427 ~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
++++|...|++++...|.++. .|...+......|+.+.+..+++++++..|++
T Consensus 440 ~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 440 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp CHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred CHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 999999999999998776554 78888888999999999999999999999953
No 47
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.94 E-value=9.5e-26 Score=213.65 Aligned_cols=286 Identities=16% Similarity=0.228 Sum_probs=239.2
Q ss_pred chhhchhHHHhcccCHHHHHHHHhchhccCCCC----hhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q psy3014 46 ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW----PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKD 121 (570)
Q Consensus 46 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 121 (570)
..++..|.++...|++++|+..|+++++..|++ ..++..+|.++...|++++|+..+++++.+.+..
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------- 76 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--------- 76 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---------
Confidence 456778999999999999999999999999998 4678899999999999999999999988652210
Q ss_pred HHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccC
Q psy3014 122 VRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSS 201 (570)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (570)
T Consensus 77 -------------------------------------------------------------------------------- 76 (338)
T 3ro2_A 77 -------------------------------------------------------------------------------- 76 (338)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-
Q psy3014 202 TMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD- 280 (570)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~- 280 (570)
...+..+.++..+|.++...|++++|+..+++++...|..
T Consensus 77 ---------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 117 (338)
T 3ro2_A 77 ---------------------------------------GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117 (338)
T ss_dssp ---------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ---------------------------------------cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Confidence 0112456778889999999999999999999999886543
Q ss_pred -----HHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHhhcc---cChhHHHHHHHHHHHHHHHcC
Q psy3014 281 -----ITFQNNIAAVYFERKE--------------------YDQCIEQYIQKIENR---ADFKLIAKALQRIGNCYKKME 332 (570)
Q Consensus 281 -----~~~~~~la~~~~~~~~--------------------~~~A~~~~~~~l~~~---~~~~~~~~~~~~l~~~~~~~~ 332 (570)
..++..+|.++...|+ +++|+..+++++... ++......++..+|.++...|
T Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 197 (338)
T 3ro2_A 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 197 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhC
Confidence 4488999999999999 999999999998653 233344778999999999999
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD- 411 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~- 411 (570)
++++|+.++++++...+.. ...+....++..+|.++...|++++|+.++++++...+..
T Consensus 198 ~~~~A~~~~~~a~~~~~~~--------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 198 NFRDAVIAHEQRLLIAKEF--------------------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhc--------------------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999998732210 0223345688999999999999999999999999886654
Q ss_pred -----HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 412 -----PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF------LKGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 412 -----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
..++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|..+|++++++.+..
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 6789999999999999999999999999875543 4578899999999999999999999999998764
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.94 E-value=9e-26 Score=207.26 Aligned_cols=183 Identities=11% Similarity=0.022 Sum_probs=83.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME 332 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 332 (570)
+|.++...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+..++++++..|++ .......+. +...|
T Consensus 83 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~~~~-~~~~~ 158 (275)
T 1xnf_A 83 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND---PFRSLWLYL-AEQKL 158 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHH-HHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---hHHHHHHHH-HHHhc
Confidence 34444444555555555555555555555555555555555555555555555555555544 222222222 23334
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD-- 410 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-- 410 (570)
++++|+..+.+++. ..|.+...+ .++.++...++.++|+..+.+++...|.
T Consensus 159 ~~~~A~~~~~~~~~--------------------------~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 211 (275)
T 1xnf_A 159 DEKQAKEVLKQHFE--------------------------KSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLA 211 (275)
T ss_dssp CHHHHHHHHHHHHH--------------------------HSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHH
T ss_pred CHHHHHHHHHHHHh--------------------------cCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccccccc
Confidence 55555555544444 222222222 2344444444445555555554444332
Q ss_pred --CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q psy3014 411 --DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAY 469 (570)
Q Consensus 411 --~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (570)
++.++..+|.++...|++++|+..|++++..+|++... .+.++..+|++++|++.+
T Consensus 212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 13455555555555555555555555555555544322 244445555555555544
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=1e-24 Score=186.82 Aligned_cols=174 Identities=17% Similarity=0.243 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
+.+.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|+. ..++..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS---AEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---HHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh---HHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
|.++...++++.|...+.+++. ..|.++.++..+|.++...|++++|+..|+++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~--------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 133 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIA--------------------------LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKT 133 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--------------------------hCccchHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 9999999999999999999998 88999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHH
Q psy3014 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLK 447 (570)
Q Consensus 405 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 447 (570)
++.+|+++.+++++|.+|..+|++++|+..|+++++++|+++.
T Consensus 134 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 134 ISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 9999999999999999999999999999999999999997643
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.93 E-value=4.4e-25 Score=202.67 Aligned_cols=255 Identities=14% Similarity=0.104 Sum_probs=216.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccC----CCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhc
Q psy3014 17 KGNAALQANNFIEAIEAYSEAIKLD----GTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYL 92 (570)
Q Consensus 17 ~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 92 (570)
++......|++++|+..|++++... |.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 3444556789999999999999983 456889999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHh
Q psy3014 93 GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQ 172 (570)
Q Consensus 93 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (570)
|++++|+..|+++++.+|++..++
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~-------------------------------------------------------- 114 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAH-------------------------------------------------------- 114 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHH--------------------------------------------------------
T ss_pred cCHHHHHHHHHHHHhcCccccHHH--------------------------------------------------------
Confidence 999999999999999998765443
Q ss_pred hCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHH
Q psy3014 173 KDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKE 252 (570)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (570)
..
T Consensus 115 ------------------------------------------------------------------------------~~ 116 (275)
T 1xnf_A 115 ------------------------------------------------------------------------------LN 116 (275)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------HH
Confidence 45
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME 332 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 332 (570)
+|.++...|++++|+..|+++++.+|++.......+.+ ...|++++|+..+++++...|++ ... ..++.++...+
T Consensus 117 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~ 191 (275)
T 1xnf_A 117 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKE---QWG-WNIVEFYLGNI 191 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCC---STH-HHHHHHHTTSS
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcc---hHH-HHHHHHHHHhc
Confidence 77788889999999999999999999998777666644 67799999999999999988887 333 34778888899
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDP 412 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 412 (570)
+.++|+..+.+++...+. ..|..+.++..+|.++...|++++|+..|++++..+|++.
T Consensus 192 ~~~~a~~~~~~~~~~~~~----------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 192 SEQTLMERLKADATDNTS----------------------LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp CHHHHHHHHHHHCCSHHH----------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred CHHHHHHHHHHHhccccc----------------------ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 999999999999883211 1234478999999999999999999999999999999775
Q ss_pred HHHHHHHHHHHHhcChHHHHHHH
Q psy3014 413 KYYSNRAACYTKLAAFDLGLKDC 435 (570)
Q Consensus 413 ~~~~~la~~~~~~~~~~~A~~~~ 435 (570)
.. .+.++...|++++|+..|
T Consensus 250 ~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHHhhHHHH
Confidence 43 477889999999999887
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.93 E-value=2.9e-23 Score=190.07 Aligned_cols=195 Identities=19% Similarity=0.328 Sum_probs=163.3
Q ss_pred HHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHhhcccChhHHHHHH
Q psy3014 250 EKELGNEAYK----KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE----RKEYDQCIEQYIQKIENRADFKLIAKAL 321 (570)
Q Consensus 250 ~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 321 (570)
++.+|.++.. .+++++|+.+|+++++.+ ++.+++.+|.++.. .+++++|+..|+++++.. + +.++
T Consensus 41 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---~~a~ 113 (273)
T 1ouv_A 41 CFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y---AEGC 113 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---HHHH
T ss_pred HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C---ccHH
Confidence 3446666666 788888888888888875 78888888888888 888888988888888763 4 7788
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH----CCC
Q psy3014 322 QRIGNCYKK----MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK----NGK 393 (570)
Q Consensus 322 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 393 (570)
..+|.+|.. .+++++|+.+|++++. .. ++.++..+|.++.. .++
T Consensus 114 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~--------------------------~~--~~~a~~~lg~~~~~~~~~~~~ 165 (273)
T 1ouv_A 114 ASLGGIYHDGKVVTRDFKKAVEYFTKACD--------------------------LN--DGDGCTILGSLYDAGRGTPKD 165 (273)
T ss_dssp HHHHHHHHHCSSSCCCHHHHHHHHHHHHH--------------------------TT--CHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHh--------------------------cC--cHHHHHHHHHHHHcCCCCCCC
Confidence 888998888 8899999999988887 33 46678888888888 889
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----CCCHHHH
Q psy3014 394 YADAVKEYTEAINRNPDDPKYYSNRAACYTK----LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG----MQQQSKA 465 (570)
Q Consensus 394 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A 465 (570)
+++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++..| +.+++.+|.+|.. .+++++|
T Consensus 166 ~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A 241 (273)
T 1ouv_A 166 LKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQA 241 (273)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHH
Confidence 99999999999877 467888999999999 9999999999999998866 7888999999998 8999999
Q ss_pred HHHHHHHHhhCCCcHHHH
Q psy3014 466 IDAYEKALELDASNAEAV 483 (570)
Q Consensus 466 ~~~~~~al~~~p~~~~~~ 483 (570)
+.+|++++++.|++...+
T Consensus 242 ~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 242 IENFKKGCKLGAKGACDI 259 (273)
T ss_dssp HHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHH
Confidence 999999999988765443
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=2.6e-24 Score=193.51 Aligned_cols=178 Identities=17% Similarity=0.287 Sum_probs=109.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME 332 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 332 (570)
+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++..|++ ..++..+|.++...|
T Consensus 63 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~ 139 (243)
T 2q7f_A 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN---GDLFYMLGTVLVKLE 139 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS---HHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhc
Confidence 44444455556666666666666666666666666666666666666666666666666555 555666666666666
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDP 412 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 412 (570)
++++|+..+++++. ..|.++.++..+|.++...|++++|+..++++++..|+++
T Consensus 140 ~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 193 (243)
T 2q7f_A 140 QPKLALPYLQRAVE--------------------------LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA 193 (243)
T ss_dssp CHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHH--------------------------hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 66666666666665 4555556666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q psy3014 413 KYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM 459 (570)
Q Consensus 413 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 459 (570)
.++..+|.++...|++++|+..+++++..+|+++.++..++.+....
T Consensus 194 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 194 DAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 66666666666666666666666666666666666666655554433
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.93 E-value=1.7e-24 Score=213.45 Aligned_cols=211 Identities=13% Similarity=0.119 Sum_probs=202.2
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH-HHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHH
Q psy3014 260 KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEY-DQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAK 338 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 338 (570)
.+.+++|+..++++....|.++.+++.+|.++...|++ ++|+..|+++++.+|++ ..++..+|.+|...|++++|+
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL---VEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHH
Confidence 34578899999999999999999999999999999999 99999999999999999 999999999999999999999
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHhcCC
Q psy3014 339 VYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKN---------GKYADAVKEYTEAINRNP 409 (570)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~al~~~p 409 (570)
.+|++++. .+|+ ..++..+|.++... |++++|+..|+++++.+|
T Consensus 158 ~~~~~al~--------------------------~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 210 (474)
T 4abn_A 158 TCFSGALT--------------------------HCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV 210 (474)
T ss_dssp HHHHHHHT--------------------------TCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHh--------------------------hCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC
Confidence 99999999 7787 69999999999999 999999999999999999
Q ss_pred CCHHHHHHHHHHHHHh--------cChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 410 DDPKYYSNRAACYTKL--------AAFDLGLKDCETCLKLDP---KFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 410 ~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
+++.+|+.+|.++... |++++|+..|++++.++| +++.+++.+|.++..+|++++|+.+|+++++++|+
T Consensus 211 ~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 211 LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999 999999999999999999 99999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCHHHH
Q psy3014 479 NAEAVEGYRQCSIAVSSNPEEV 500 (570)
Q Consensus 479 ~~~~~~~l~~~~~~~~~~~e~~ 500 (570)
++.++..++.++..+|+..++.
T Consensus 291 ~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 291 WPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999766554
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.93 E-value=3.1e-23 Score=189.89 Aligned_cols=163 Identities=17% Similarity=0.234 Sum_probs=122.6
Q ss_pred HHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHhhcccChhHHHHHH
Q psy3014 250 EKELGNEAYK----KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE----RKEYDQCIEQYIQKIENRADFKLIAKAL 321 (570)
Q Consensus 250 ~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 321 (570)
++.+|.++.. .+++++|+.+|+++++. +++.++..+|.+|.. .+++++|+..|+++++.. + ..++
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~---~~a~ 149 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--D---GDGC 149 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--C---HHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--c---HHHH
Confidence 3445666666 77777777777777776 367777888888877 788888888888887765 3 5677
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH----CCC
Q psy3014 322 QRIGNCYKK----MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK----NGK 393 (570)
Q Consensus 322 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 393 (570)
..+|.+|.. .+++++|+.+|+++++ . .++.++..+|.++.. .++
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~--------------------------~--~~~~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACD--------------------------L--KDSPGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHH--------------------------T--TCHHHHHHHHHHHHHTCSSCCC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHH--------------------------C--CCHHHHHHHHHHHHcCCCCCcc
Confidence 778888877 7888888888888776 3 245677788888888 888
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcChHHHHHHHHHHHhcCCCCHHHH
Q psy3014 394 YADAVKEYTEAINRNPDDPKYYSNRAACYTK----LAAFDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 394 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~ 449 (570)
+++|+.+|+++++..| +.+++.+|.+|.. .+++++|+.+|+++++..|.++..+
T Consensus 202 ~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 202 FKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887755 7788888888888 8888888888888888877654433
No 55
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.93 E-value=5.7e-24 Score=189.11 Aligned_cols=211 Identities=16% Similarity=0.189 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDP-TDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
++..++.+|.+++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..++++++.+|++ ..++..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL---ANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH---HHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch---HHHHHHH
Confidence 468999999999999999999999999999999 999999999999999999999999999999999998 9999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhH-------HHHHHHHHHHHHCCCHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKA-------EEAKERGNELFKNGKYADA 397 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~A 397 (570)
|.++...|++++|+..|++++. ..|.++ .++..+|.++...|++++|
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 136 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIK--------------------------AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKA 136 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--------------------------HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH--------------------------HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHH
Confidence 9999999999999999999999 777777 6799999999999999999
Q ss_pred HHHHHHHHhcCCC--CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 398 VKEYTEAINRNPD--DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 398 ~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
+..|+++++.+|+ ++.++..+|.++...|+ ..++++..+.+.....+ .+......+.+++|+.+|++++++
T Consensus 137 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 137 EENYKHATDVTSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999 99999999999987654 45677777777765444 445566678899999999999999
Q ss_pred CCCcHHHHHHHHHHHHH
Q psy3014 476 DASNAEAVEGYRQCSIA 492 (570)
Q Consensus 476 ~p~~~~~~~~l~~~~~~ 492 (570)
+|+++.++..++.+...
T Consensus 210 ~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 210 SPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp CTTCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999887643
No 56
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.92 E-value=7.9e-24 Score=204.13 Aligned_cols=320 Identities=12% Similarity=0.018 Sum_probs=248.8
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---Ccchh--hch--hHHHhcccCHHHHH-----------HHHh
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGT---NHILF--SNR--SAAFAKEGNYEKAL-----------EDAE 69 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~--~~l--a~~~~~~g~~~~A~-----------~~~~ 69 (570)
++.+...+.....++..+++++|...++++...-+. +.... +.+ .......++++.+. ..++
T Consensus 9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~ 88 (383)
T 3ulq_A 9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL 88 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence 567888899999999999999999999998664322 33322 222 12222334444444 4444
Q ss_pred chhccCCCChh------HHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCc
Q psy3014 70 KTISLKPDWPK------GYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDP 143 (570)
Q Consensus 70 ~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 143 (570)
++ ...|.... .++.+|.++...|++++|+..|++++++.+..
T Consensus 89 ~i-~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------- 136 (383)
T 3ulq_A 89 EI-DKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV------------------------------- 136 (383)
T ss_dssp HH-HHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-------------------------------
T ss_pred HH-HhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC-------------------------------
Confidence 43 22333333 34559999999999999999999999863211
Q ss_pred hHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCC
Q psy3014 144 NIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKA 223 (570)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (570)
T Consensus 137 -------------------------------------------------------------------------------- 136 (383)
T 3ulq_A 137 -------------------------------------------------------------------------------- 136 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcC
Q psy3014 224 PSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD-------ITFQNNIAAVYFERKE 296 (570)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~ 296 (570)
...+..+.++..+|.++...|++++|+.++++++++.+.. ..++..+|.++...|+
T Consensus 137 -----------------~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 199 (383)
T 3ulq_A 137 -----------------KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQ 199 (383)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTC
T ss_pred -----------------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcC
Confidence 0112456788889999999999999999999999985433 4688999999999999
Q ss_pred HHHHHHHHHHHhhccc---ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy3014 297 YDQCIEQYIQKIENRA---DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYI 373 (570)
Q Consensus 297 ~~~A~~~~~~~l~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 373 (570)
+++|+..++++++..+ +......++.++|.+|...|++++|+.++++++...+.. .
T Consensus 200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~---------------------~ 258 (383)
T 3ulq_A 200 YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES---------------------N 258 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------------------T
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---------------------c
Confidence 9999999999997754 334456799999999999999999999999998732110 2
Q ss_pred C-hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHhcC---hHHHHHHHHHHHhcCCC
Q psy3014 374 D-PVKAEEAKERGNELFKNGKYADAVKEYTEAINRN-----PDDPKYYSNRAACYTKLAA---FDLGLKDCETCLKLDPK 444 (570)
Q Consensus 374 ~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~ 444 (570)
+ |..+.++..+|.++...|++++|+.++++++... |.....+..+|.++...|+ +++|+..+++. ...|.
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~ 337 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYAD 337 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHH
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHH
Confidence 4 7789999999999999999999999999999874 3333446789999999999 88888888876 44455
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 445 FLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
...++..+|.+|..+|++++|..+|++++++...
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999987653
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.92 E-value=3.8e-24 Score=211.06 Aligned_cols=242 Identities=14% Similarity=0.112 Sum_probs=208.8
Q ss_pred hHHhHHHHHHHHHHHHHcC--------------CHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCH-HHHHHHHhch
Q psy3014 7 LVYEVSLLKDKGNAALQAN--------------NFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNY-EKALEDAEKT 71 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~--------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~a 71 (570)
.....+.++..+..++..+ .+++|+..++++....|.++.+++.+|.++...|++ ++|+..|+++
T Consensus 50 l~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~a 129 (474)
T 4abn_A 50 LQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKA 129 (474)
T ss_dssp HHHHHHHHHHHHHTHHHHSCGGGGGGHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3445555666666665433 367888899999999999999999999999999999 9999999999
Q ss_pred hccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhh
Q psy3014 72 ISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQL 151 (570)
Q Consensus 72 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (570)
++++|+++.+|+.+|.+|...|++++|+..|+++++++|+ ..++..++.++....
T Consensus 130 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~------------------------ 184 (474)
T 4abn_A 130 VKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQ------------------------ 184 (474)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCC------------------------
T ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhc------------------------
Confidence 9999999999999999999999999999999999999998 455555444443300
Q ss_pred CCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy3014 152 DPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKK 231 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (570)
T Consensus 185 -------------------------------------------------------------------------------- 184 (474)
T 4abn_A 185 -------------------------------------------------------------------------------- 184 (474)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--------cCHHHHHHH
Q psy3014 232 PAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFER--------KEYDQCIEQ 303 (570)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~ 303 (570)
.+......|++++|+..|+++++++|+++.+|..+|.++... |++++|+..
T Consensus 185 ---------------------~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~ 243 (474)
T 4abn_A 185 ---------------------TDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243 (474)
T ss_dssp ---------------------CSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ---------------------cCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 000111238999999999999999999999999999999999 999999999
Q ss_pred HHHHhhccc---ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHH
Q psy3014 304 YIQKIENRA---DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEE 380 (570)
Q Consensus 304 ~~~~l~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 380 (570)
|+++++.+| ++ +.++..+|.+|...|++++|+..|++++. .+|+++.+
T Consensus 244 ~~~al~~~p~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------------------l~p~~~~a 294 (474)
T 4abn_A 244 YAQAEKVDRKASSN---PDLHLNRATLHKYEESYGEALEGFSQAAA--------------------------LDPAWPEP 294 (474)
T ss_dssp HHHHHHHCGGGGGC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHH
T ss_pred HHHHHHhCCCcccC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCCHHH
Confidence 999999999 77 99999999999999999999999999999 88999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Q psy3014 381 AKERGNELFKNGKYADAVKEYTE 403 (570)
Q Consensus 381 ~~~~~~~~~~~~~~~~A~~~~~~ 403 (570)
+..++.++...|++++|+..+.+
T Consensus 295 ~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 295 QQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999876654
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=1.4e-23 Score=195.45 Aligned_cols=245 Identities=13% Similarity=0.103 Sum_probs=173.5
Q ss_pred HHhHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHccCCCCcchhhchhHHHhc-------ccCH-------HHHH
Q psy3014 8 VYEVSLLKDKGNAALQA----NNF----IEAIEAYSEAIKLDGTNHILFSNRSAAFAK-------EGNY-------EKAL 65 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~----~~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~ 65 (570)
+.+...|......-... ++. ++|+..|++++..+|+++.+|+.+|..+.. .|++ ++|+
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 34445555554443332 233 678888888888888888888888887763 4665 7888
Q ss_pred HHHhchhc-cCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHH-HHHHHHHHHHHhhhccCCCccccccCCCc
Q psy3014 66 EDAEKTIS-LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ-MKEAIKDVRNQEMNDMNRGDPFANLFSDP 143 (570)
Q Consensus 66 ~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 143 (570)
..|++++. ++|++..+|..+|.++...|++++|...|++++++.|.+.. ++
T Consensus 85 ~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------------------------- 137 (308)
T 2ond_A 85 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVY--------------------------- 137 (308)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHH---------------------------
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHH---------------------------
Confidence 88888888 68888888888888888888888888888888887776543 22
Q ss_pred hHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCC
Q psy3014 144 NIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKA 223 (570)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (570)
T Consensus 138 -------------------------------------------------------------------------------- 137 (308)
T 2ond_A 138 -------------------------------------------------------------------------------- 137 (308)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHH
Q psy3014 224 PSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE-RKEYDQCIE 302 (570)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~ 302 (570)
..+|.++.+.|++++|+..|+++++..|.+..++...+.+... .|++++|+.
T Consensus 138 ---------------------------~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 138 ---------------------------IQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp ---------------------------HHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred ---------------------------HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3355555667778888888888888877777777665555433 577777777
Q ss_pred HHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh-hHHHH
Q psy3014 303 QYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV-KAEEA 381 (570)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 381 (570)
.|+++++.+|++ +.++..+|.++...|++++|+..|++++...+ ..|+ ...+|
T Consensus 191 ~~~~al~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~-----------------------l~p~~~~~l~ 244 (308)
T 2ond_A 191 IFELGLKKYGDI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS-----------------------LPPEKSGEIW 244 (308)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS-----------------------SCGGGCHHHH
T ss_pred HHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC-----------------------CCHHHHHHHH
Confidence 777777777777 77777777777777777777777777776211 2442 56667
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Q psy3014 382 KERGNELFKNGKYADAVKEYTEAINRNPDDP 412 (570)
Q Consensus 382 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 412 (570)
..++..+...|++++|...++++++..|+++
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 7777777777777777777777777777644
No 59
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.92 E-value=9e-25 Score=214.13 Aligned_cols=338 Identities=10% Similarity=-0.008 Sum_probs=246.9
Q ss_pred HhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHccCCCCcchhhchhHHHhccc-----CHHHHHHHHhchhccCCCChh
Q psy3014 9 YEVSLLKDKGNAALQANNF---IEAIEAYSEAIKLDGTNHILFSNRSAAFAKEG-----NYEKALEDAEKTISLKPDWPK 80 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~ 80 (570)
.++++++.+|.++...|++ ++|+.+|+++++. ++.+++.+|.++...+ ++++|+.+|++++.. +++.
T Consensus 33 g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~ 107 (452)
T 3e4b_A 33 GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGN 107 (452)
T ss_dssp TCCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSS
T ss_pred CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHH
Confidence 4566788899999999999 9999999999976 6789999999666655 899999999999984 5567
Q ss_pred HHhHHHHHHhhccCHHHH---HHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCC
Q psy3014 81 GYSRKGSALSYLGRYKES---ISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP 157 (570)
Q Consensus 81 ~~~~la~~~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (570)
+++.+|.+|...+...++ ...+.++.. +.++.+...++.++............
T Consensus 108 A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~---------------------- 163 (452)
T 3e4b_A 108 TLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDD---------------------- 163 (452)
T ss_dssp CHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHH----------------------
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHH----------------------
Confidence 999999999988775554 444444433 34567888888888772221111000
Q ss_pred CCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 158 FLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPED 237 (570)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (570)
... ......
T Consensus 164 ---------a~~--------------------~~~~a~------------------------------------------ 172 (452)
T 3e4b_A 164 ---------VER--------------------ICKAAL------------------------------------------ 172 (452)
T ss_dssp ---------HHH--------------------HHHHHT------------------------------------------
T ss_pred ---------HHH--------------------HHHHHH------------------------------------------
Confidence 000 000000
Q ss_pred cccchhHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----cCHHHHHHHHHHHhhc
Q psy3014 238 KNLTDEQRSAKKEKELGNEAYKKK---NFEEALAHYNKAVEFDPTDITFQNNIAAVYFER----KEYDQCIEQYIQKIEN 310 (570)
Q Consensus 238 ~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~~l~~ 310 (570)
..++.+++.+|.++...| ++++|+..|+++.+..|.....++.+|.+|... +++++|+..|+++.
T Consensus 173 ------~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-- 244 (452)
T 3e4b_A 173 ------NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-- 244 (452)
T ss_dssp ------TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--
T ss_pred ------cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--
Confidence 022347889999999999 999999999999999999999999999999766 79999999999998
Q ss_pred ccChhHHHHHHHHHHHH-H--HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q psy3014 311 RADFKLIAKALQRIGNC-Y--KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNE 387 (570)
Q Consensus 311 ~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 387 (570)
|++ +.+++.+|.+ + ...+++++|+.+|+++.. +.++.+++.+|.+
T Consensus 245 -~g~---~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~----------------------------~g~~~A~~~Lg~~ 292 (452)
T 3e4b_A 245 -PGY---PASWVSLAQLLYDFPELGDVEQMMKYLDNGRA----------------------------ADQPRAELLLGKL 292 (452)
T ss_dssp -GGS---THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH----------------------------TTCHHHHHHHHHH
T ss_pred -CCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----------------------------CCCHHHHHHHHHH
Confidence 777 8899999998 4 578999999999999976 3478899999999
Q ss_pred HHHCC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy3014 388 LFKNG-----KYADAVKEYTEAINRNPDDPKYYSNRAACYTK----LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG 458 (570)
Q Consensus 388 ~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 458 (570)
|. .| ++++|+.+|+++. |.++.+++++|.+|.. ..++++|+.+|+++.+ +.++.+.+.+|.+|..
T Consensus 293 y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 293 YY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQ 366 (452)
T ss_dssp HH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHS
T ss_pred HH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHh
Confidence 98 55 9999999999998 8999999999999887 3499999999999987 4568899999999985
Q ss_pred ----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 459 ----MQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 459 ----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
.+++.+|..+|+++.+.. ++.+...+..+...+.
T Consensus 367 G~g~~~d~~~A~~~~~~A~~~g--~~~a~~~l~~l~~~~~ 404 (452)
T 3e4b_A 367 GKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQLEAPLT 404 (452)
T ss_dssp CTTBCCCHHHHHHHHHHHHTTC--CHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCC
Confidence 569999999999999865 5667777777755443
No 60
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.92 E-value=6.3e-23 Score=185.55 Aligned_cols=172 Identities=18% Similarity=0.182 Sum_probs=154.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhh--cccChhHHHHHHHHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE--NRADFKLIAKALQRIGNCY 328 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~~~~l~~~~ 328 (570)
..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++. ..|.. ..++..+|.++
T Consensus 75 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~la~~~ 151 (252)
T 2ho1_A 75 AALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER---SRVFENLGLVS 151 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTH---HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCccc---HHHHHHHHHHH
Confidence 34677777789999999999999999999999999999999999999999999999998 66766 88899999999
Q ss_pred HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 408 (570)
...|++++|+..+++++. ..|.++.++..+|.++...|++++|+..++++++..
T Consensus 152 ~~~g~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 205 (252)
T 2ho1_A 152 LQMKKPAQAKEYFEKSLR--------------------------LNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG 205 (252)
T ss_dssp HHTTCHHHHHHHHHHHHH--------------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHcCCHHHHHHHHHHHHh--------------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999988 778888899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHH
Q psy3014 409 PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR 451 (570)
Q Consensus 409 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 451 (570)
|.++.++..++.++...|++++|...+++++...|+++.....
T Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 206 GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999999999999999998876543
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=9.1e-23 Score=189.92 Aligned_cols=191 Identities=13% Similarity=0.086 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHH-HHHHHHHHHHHcCCHHHHHHH
Q psy3014 263 FEEALAHYNKAVE-FDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAK-ALQRIGNCYKKMEDWKNAKVY 340 (570)
Q Consensus 263 ~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~ 340 (570)
+++|+..|++++. ++|++..+|..+|.++...|++++|...|+++++..|.+ .. +|..+|.++...|++++|+..
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID---PTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC---THHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC---ccHHHHHHHHHHHHhcCHHHHHHH
Confidence 5999999999999 799999999999999999999999999999999999988 55 899999999999999999999
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 341 FEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK-NGKYADAVKEYTEAINRNPDDPKYYSNRA 419 (570)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la 419 (570)
|++++. ..|....++...+.+... .|++++|+.+|+++++.+|+++.+|..+|
T Consensus 157 ~~~a~~--------------------------~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 210 (308)
T 2ond_A 157 FKKARE--------------------------DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYI 210 (308)
T ss_dssp HHHHHT--------------------------STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHh--------------------------cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999998 677777777766666543 79999999999999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHhc---CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Q psy3014 420 ACYTKLAAFDLGLKDCETCLKL---DPK-FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482 (570)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~al~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 482 (570)
.++...|++++|+..|++++.. .|+ ....|..++.++...|++++|...++++++..|++...
T Consensus 211 ~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 211 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 9999999999999999999995 553 77899999999999999999999999999999986543
No 62
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.92 E-value=1.8e-22 Score=179.07 Aligned_cols=172 Identities=13% Similarity=0.044 Sum_probs=142.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHhh--cccChhHHHHHHHHHHHHH
Q psy3014 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFER-KEYDQCIEQYIQKIE--NRADFKLIAKALQRIGNCY 328 (570)
Q Consensus 252 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~~l~--~~~~~~~~~~~~~~l~~~~ 328 (570)
.+|.++...|++++|+.+|++++..+|.+..++..+|.++... |++++|+..++++++ ..|.. ..++..+|.++
T Consensus 47 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~ 123 (225)
T 2vq2_A 47 VRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTP---YIANLNKGICS 123 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCH---HHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcch---HHHHHHHHHHH
Confidence 4566666788888888888888888888888888888888888 888888888888888 44554 77888888888
Q ss_pred HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 408 (570)
...|++++|+..+++++. ..|.++.++..+|.++...|++++|+..++++++..
T Consensus 124 ~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLA--------------------------AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV 177 (225)
T ss_dssp HHTTCHHHHHHHHHHHHH--------------------------HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH--------------------------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888888887 677778888888888888888888888888888888
Q ss_pred C-CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 409 P-DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 409 p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
| .++..+..++.++...|+++.|..+++.+...+|+++.+...+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 178 EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 8 8888888888888888888888888888888888887765543
No 63
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.91 E-value=6.9e-23 Score=182.06 Aligned_cols=189 Identities=14% Similarity=0.091 Sum_probs=162.8
Q ss_pred chhH-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHH
Q psy3014 241 TDEQ-RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAK 319 (570)
Q Consensus 241 ~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 319 (570)
...| .+..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++ ..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~ 111 (228)
T 4i17_A 35 KLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN---AT 111 (228)
T ss_dssp HHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HH
T ss_pred hccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---HH
Confidence 3344 6678888999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHCCCHHHH
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV--KAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A 397 (570)
.+..++.++...|... ...+++++|+..+++++..+|. .+.++..+|.++...|
T Consensus 112 ~~~~~~~~~~~~g~~~-------------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~----- 167 (228)
T 4i17_A 112 IEKLYAIYYLKEGQKF-------------------QQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG----- 167 (228)
T ss_dssp HHHHHHHHHHHHHHHH-------------------HHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhHHH-------------------HHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-----
Confidence 7788888777665433 4567889999999999999999 9999999999997654
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG 458 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 458 (570)
...++++..+.+..+..+ .+......+.+++|+.+++++++++|+++.+...++.+...
T Consensus 168 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 168 ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 455677788877775554 44556678889999999999999999999999888887654
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.91 E-value=1.4e-23 Score=214.27 Aligned_cols=173 Identities=23% Similarity=0.344 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
.|++++++.++|.++..+|++++|+.+|+++++++|++..++.++|.++..+|++++|+..|+++++++|++ ..++.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~ 81 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF---ADAYS 81 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Confidence 456666666666666666666666666666666666666666666666666666666666666666666666 66666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
++|.++..+|++++|+..|+++++ .+|+++.++.++|.++...|++++|+..|+
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~--------------------------l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQ--------------------------INPAFADAHSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666666666666666665 556666666666666666666666666666
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC
Q psy3014 403 EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 444 (570)
++++++|+++.++.++|.++..+|++++|++.+++++++.|+
T Consensus 136 ~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 136 TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 666666666666666666666666666666666666555443
No 65
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.91 E-value=5.2e-23 Score=186.94 Aligned_cols=215 Identities=14% Similarity=0.158 Sum_probs=190.0
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchhhchhHHHhcccCHHHHHHHHhchhccCCCC---hh
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW---PK 80 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 80 (570)
.+.++..++.+|..++..|+|++|+..|++++..+|++ +.+++.+|.++..+|++++|+..|+++++..|++ +.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 45678999999999999999999999999999999998 8899999999999999999999999999998854 67
Q ss_pred HHhHHHHHHhh--------ccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhC
Q psy3014 81 GYSRKGSALSY--------LGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLD 152 (570)
Q Consensus 81 ~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (570)
+++.+|.++.. .|++++|+..|+++++.+|++..+...+..+...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~--------------------------- 143 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL--------------------------- 143 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH---------------------------
Confidence 89999999999 9999999999999999999987766554443322
Q ss_pred CCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy3014 153 PRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKP 232 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (570)
T Consensus 144 -------------------------------------------------------------------------------- 143 (261)
T 3qky_A 144 -------------------------------------------------------------------------------- 143 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHh----------cCHHH
Q psy3014 233 AEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT---DITFQNNIAAVYFER----------KEYDQ 299 (570)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------~~~~~ 299 (570)
.+.....++.+|.++...|++++|+..|+++++.+|+ .+.+++.+|.++... |++++
T Consensus 144 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~ 213 (261)
T 3qky_A 144 ----------RAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRR 213 (261)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHH
Confidence 1134556788999999999999999999999999998 467999999999977 99999
Q ss_pred HHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHH
Q psy3014 300 CIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAK 338 (570)
Q Consensus 300 A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 338 (570)
|+..|+++++..|+++....+...++.++...++++.+.
T Consensus 214 A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 214 AVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999877888888888888877766543
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.90 E-value=6.3e-23 Score=209.58 Aligned_cols=176 Identities=22% Similarity=0.263 Sum_probs=170.0
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHH
Q psy3014 276 FDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRT 355 (570)
Q Consensus 276 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 355 (570)
..|+++.++.++|.++..+|++++|+..|+++++++|++ ..++.++|.+|..+|++++|+..|+++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~---~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--------- 71 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF---AAAHSNLASVLQQQGKLQEALMHYKEAIR--------- 71 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------
Confidence 478999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHH
Q psy3014 356 LISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDC 435 (570)
Q Consensus 356 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 435 (570)
.+|+++.++.++|.++...|++++|+.+|+++++++|+++.+++++|.+|..+|++++|+..|
T Consensus 72 -----------------l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~ 134 (723)
T 4gyw_A 72 -----------------ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134 (723)
T ss_dssp -----------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 436 ETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 436 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
+++++++|+++.++.++|.++..+|++++|.+.|++++++.|+..
T Consensus 135 ~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179 (723)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHH
Confidence 999999999999999999999999999999999999999876543
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.90 E-value=7.8e-23 Score=197.14 Aligned_cols=240 Identities=12% Similarity=0.124 Sum_probs=195.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcc---CC---CCcchhhchhHHHhcccCHHHHHHHHhchhccCCC-------Chh
Q psy3014 14 LKDKGNAALQANNFIEAIEAYSEAIKL---DG---TNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD-------WPK 80 (570)
Q Consensus 14 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~ 80 (570)
++.+|..++..|+|++|+..|++++.+ .| ..+.++..+|.+|...|++++|+..+++++++.+. ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 344999999999999999999999987 22 24678999999999999999999999999988544 345
Q ss_pred HHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCC
Q psy3014 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS 160 (570)
Q Consensus 81 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (570)
++..+|.+|..+|++++|+..|++++++.+....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------------------------------------- 219 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---------------------------------------------- 219 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------------------------------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC----------------------------------------------
Confidence 8999999999999999999999999986543211
Q ss_pred ChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q psy3014 161 DPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNL 240 (570)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (570)
T Consensus 220 -------------------------------------------------------------------------------- 219 (383)
T 3ulq_A 220 -------------------------------------------------------------------------------- 219 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----cC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccC-
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVE-----FD-PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD- 313 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~- 313 (570)
.+..+.++.++|.++...|++++|+.+|+++++ .+ |..+.++..+|.++...|++++|+..++++++..+.
T Consensus 220 --~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 297 (383)
T 3ulq_A 220 --PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA 297 (383)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 124456778899999999999999999999999 46 778889999999999999999999999999977432
Q ss_pred -hhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q psy3014 314 -FKLIAKALQRIGNCYKKMED---WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELF 389 (570)
Q Consensus 314 -~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (570)
++.....+..+|.++...|+ +++|+..+++.- ..|....++..+|.++.
T Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---------------------------~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---------------------------LYADLEDFAIDVAKYYH 350 (383)
T ss_dssp TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---------------------------CHHHHHHHHHHHHHHHH
Confidence 11223346678888888888 666666666652 45666777888888888
Q ss_pred HCCCHHHHHHHHHHHHhcC
Q psy3014 390 KNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 390 ~~~~~~~A~~~~~~al~~~ 408 (570)
..|++++|..+|+++++..
T Consensus 351 ~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 8888888888888888764
No 68
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.90 E-value=3.8e-22 Score=181.25 Aligned_cols=198 Identities=16% Similarity=0.230 Sum_probs=165.1
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHH
Q psy3014 275 EFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIR 354 (570)
Q Consensus 275 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 354 (570)
...|.++..++.+|..++..|++++|+..|+++++..|+++....+++.+|.++...|++++|+..|++++...|
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p----- 83 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ----- 83 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC-----
Confidence 457778888888888888888888888888888888887766677888888888888888888888888888544
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHhcCCCCHHHH-----------
Q psy3014 355 TLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK--------NGKYADAVKEYTEAINRNPDDPKYY----------- 415 (570)
Q Consensus 355 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~----------- 415 (570)
.+|..+.+++.+|.++.. .|++++|+..|+++++..|+++.+.
T Consensus 84 ------------------~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~ 145 (261)
T 3qky_A 84 ------------------IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRA 145 (261)
T ss_dssp ------------------TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred ------------------CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHH
Confidence 344567788888888888 9999999999999999999876555
Q ss_pred ------HHHHHHHHHhcChHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHhhC
Q psy3014 416 ------SNRAACYTKLAAFDLGLKDCETCLKLDPK---FLKGWIRKGKILQGM----------QQQSKAIDAYEKALELD 476 (570)
Q Consensus 416 ------~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~ 476 (570)
+.+|.+|...|++++|+..|++++...|+ .+.+++.+|.+|..+ |++++|+..|+++++.+
T Consensus 146 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 146 KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 88899999999999999999999999998 567899999999977 99999999999999999
Q ss_pred CCcH---HHHHHHHHHHHHhcC
Q psy3014 477 ASNA---EAVEGYRQCSIAVSS 495 (570)
Q Consensus 477 p~~~---~~~~~l~~~~~~~~~ 495 (570)
|+++ .+...++.++..+++
T Consensus 226 p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHH
Confidence 9995 455566666666654
No 69
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.90 E-value=1.8e-21 Score=187.09 Aligned_cols=320 Identities=17% Similarity=0.086 Sum_probs=241.3
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---CCcchhhchhHHHh----cccCHHHHH---------HHHhch
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDG---TNHILFSNRSAAFA----KEGNYEKAL---------EDAEKT 71 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~----~~g~~~~A~---------~~~~~a 71 (570)
++.+...+..-..++..+++++|...++++...-+ .+.......+...+ ..+.+..+. ..++++
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 45667777777778999999999999998755322 23333322221111 122222222 333332
Q ss_pred hccC-C--C--ChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHH
Q psy3014 72 ISLK-P--D--WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 146 (570)
Q Consensus 72 l~~~-p--~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (570)
-... | + ....++.+|..+...|++++|+..|++++++.+...
T Consensus 89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------------- 135 (378)
T 3q15_A 89 ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVS--------------------------------- 135 (378)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC---------------------------------
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCC---------------------------------
Confidence 2111 1 1 123577899999999999999999999988643211
Q ss_pred HHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCC
Q psy3014 147 VQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSP 226 (570)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (570)
T Consensus 136 -------------------------------------------------------------------------------- 135 (378)
T 3q15_A 136 -------------------------------------------------------------------------------- 135 (378)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHhcCHHH
Q psy3014 227 PPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT-------DITFQNNIAAVYFERKEYDQ 299 (570)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~ 299 (570)
..+..+.++..+|.++...|++++|+.++++++++.+. ...++..+|.++...|++++
T Consensus 136 ---------------~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~ 200 (378)
T 3q15_A 136 ---------------DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDK 200 (378)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHH
Confidence 11256778889999999999999999999999987543 24578899999999999999
Q ss_pred HHHHHHHHhhccc---ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh
Q psy3014 300 CIEQYIQKIENRA---DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV 376 (570)
Q Consensus 300 A~~~~~~~l~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 376 (570)
|+..++++++..+ +......++.++|.+|...|++++|+.++++++...+.. .+|.
T Consensus 201 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---------------------~~~~ 259 (378)
T 3q15_A 201 ALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---------------------VPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---------------------CGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---------------------CChh
Confidence 9999999997643 334557899999999999999999999999998732110 4566
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHhcC---hHHHHHHHHHHHhcCCCCHHH
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNP-----DDPKYYSNRAACYTKLAA---FDLGLKDCETCLKLDPKFLKG 448 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~ 448 (570)
.+.++..+|.++...|++++|+.+++++++..+ .....+..++.++...++ +.+|+..+++. ...|.....
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~ 338 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHH
Confidence 788999999999999999999999999999843 335567788888888888 88888888872 334445667
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 449 WIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
+..+|.+|...|++++|..+|+++++...
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999998653
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=8e-23 Score=191.19 Aligned_cols=215 Identities=17% Similarity=0.197 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc-----
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEF--------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR----- 311 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~----- 311 (570)
..+.++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+..++++++..
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 146 (311)
T 3nf1_A 67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC
Confidence 55677888999999999999999999999987 35567889999999999999999999999999875
Q ss_pred cChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHH
Q psy3014 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA-YIDPVKAEEAKERGNELFK 390 (570)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 390 (570)
++.+....++..+|.++...|++++|+.++++++.... +.. ...|....++..+|.++..
T Consensus 147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------------------~~~~~~~~~~~~~~~~la~~~~~ 207 (311)
T 3nf1_A 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ-------------------TKLGPDDPNVAKTKNNLASCYLK 207 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-------------------HTSCTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------------------HHhCCCCHHHHHHHHHHHHHHHH
Confidence 44445588999999999999999999999999987310 000 0277788899999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCC---------C------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy3014 391 NGKYADAVKEYTEAINRNPD---------D------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKI 455 (570)
Q Consensus 391 ~~~~~~A~~~~~~al~~~p~---------~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 455 (570)
.|++++|+.+++++++..|. . ...+...+..+...+.+.+|...+.+++...|....++..+|.+
T Consensus 208 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~ 287 (311)
T 3nf1_A 208 QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGAL 287 (311)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 99999999999999976332 2 23444555566677778888899999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 456 LQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 456 ~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
|..+|++++|+.+|++++++.|+
T Consensus 288 ~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 288 YRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999885
No 71
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.89 E-value=1.1e-20 Score=181.56 Aligned_cols=323 Identities=10% Similarity=-0.007 Sum_probs=248.6
Q ss_pred hhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc-----hhhchhHHHhcccCHHHHHHHHhchhccCCC
Q psy3014 3 NLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHI-----LFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77 (570)
Q Consensus 3 ~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 77 (570)
++......+..+..+|..++..|++++|+..+++++...|.+.. ++..+|.++...|++++|+..+++++.+.|.
T Consensus 6 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 85 (373)
T 1hz4_A 6 DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ 85 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh
Confidence 34445556788999999999999999999999999998876532 5788999999999999999999999988765
Q ss_pred Ch------hHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhh
Q psy3014 78 WP------KGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQL 151 (570)
Q Consensus 78 ~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (570)
.. .++..+|.++...|++++|+..+++++...+....
T Consensus 86 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~------------------------------------- 128 (373)
T 1hz4_A 86 HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL------------------------------------- 128 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------------------------------
T ss_pred cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc-------------------------------------
Confidence 43 34788999999999999999999999875431100
Q ss_pred CCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy3014 152 DPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKK 231 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (570)
T Consensus 129 -------------------------------------------------------------------------------- 128 (373)
T 1hz4_A 129 -------------------------------------------------------------------------------- 128 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhcCHHHHHHHHHH
Q psy3014 232 PAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT-----DITFQNNIAAVYFERKEYDQCIEQYIQ 306 (570)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~ 306 (570)
...+.....+..+|.++...|++++|..++++++...|. ...++..+|.++...|++++|...+++
T Consensus 129 ---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 199 (373)
T 1hz4_A 129 ---------EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 199 (373)
T ss_dssp ---------TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------ccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 000134556677999999999999999999999998775 346788999999999999999999999
Q ss_pred HhhcccC--hhHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy3014 307 KIENRAD--FKLIAKA--LQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAK 382 (570)
Q Consensus 307 ~l~~~~~--~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 382 (570)
++...+. .+..... ...++.++...|++++|...+.+++...+. ..+.....+.
T Consensus 200 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~----------------------~~~~~~~~~~ 257 (373)
T 1hz4_A 200 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA----------------------NNHFLQGQWR 257 (373)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT----------------------TCGGGHHHHH
T ss_pred HHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCC----------------------cchhhHHHHH
Confidence 9876432 1111112 224556688999999999999999874321 0111234567
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy3014 383 ERGNELFKNGKYADAVKEYTEAINRNPD------DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKIL 456 (570)
Q Consensus 383 ~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 456 (570)
.+|.++...|++++|...+++++...+. ...++..+|.++...|++++|...+++++.+.+.. .....+
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~-----g~~~~~ 332 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT-----GFISHF 332 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----CCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc-----cHHHHH
Confidence 8899999999999999999999876432 23478889999999999999999999998875421 122334
Q ss_pred HhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 457 QGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 457 ~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
...| ......+++.+...|.+.
T Consensus 333 ~~~g--~~~~~ll~~~~~~~~~~~ 354 (373)
T 1hz4_A 333 VIEG--EAMAQQLRQLIQLNTLPE 354 (373)
T ss_dssp HTTH--HHHHHHHHHHHHTTCSCH
T ss_pred HHcc--HHHHHHHHHHHhCCCCch
Confidence 4444 677778888888888643
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.89 E-value=8.2e-23 Score=191.12 Aligned_cols=182 Identities=15% Similarity=0.232 Sum_probs=156.0
Q ss_pred hhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------CCCCcchhhchhHHHhcccCHHHHHHHHhchhcc---
Q psy3014 6 SLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKL--------DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL--- 74 (570)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 74 (570)
..|..+..+..+|..++..|++++|+.+|++++.. +|....++..+|.++...|++++|+..+++++..
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999995 6667889999999999999999999999999987
Q ss_pred -----CCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHh
Q psy3014 75 -----KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQL 149 (570)
Q Consensus 75 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (570)
.|....++..+|.++...|++++|+..|++++++.... .
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~----------~-------------------------- 145 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV----------L-------------------------- 145 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH----------H--------------------------
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh----------c--------------------------
Confidence 46678899999999999999999999999998653100 0
Q ss_pred hhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy3014 150 QLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPA 229 (570)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (570)
T Consensus 146 -------------------------------------------------------------------------------- 145 (311)
T 3nf1_A 146 -------------------------------------------------------------------------------- 145 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHH
Q psy3014 230 KKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEF--------DPTDITFQNNIAAVYFERKEYDQCI 301 (570)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~ 301 (570)
-...+....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+
T Consensus 146 ----------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 215 (311)
T 3nf1_A 146 ----------GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE 215 (311)
T ss_dssp ----------CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ----------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 0001245677788999999999999999999999998 6667788999999999999999999
Q ss_pred HHHHHHhhcccC
Q psy3014 302 EQYIQKIENRAD 313 (570)
Q Consensus 302 ~~~~~~l~~~~~ 313 (570)
..++++++..+.
T Consensus 216 ~~~~~al~~~~~ 227 (311)
T 3nf1_A 216 TLYKEILTRAHE 227 (311)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999876543
No 73
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.89 E-value=5.3e-21 Score=173.58 Aligned_cols=250 Identities=10% Similarity=0.042 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHccCCCCcchhhchhHHHhccc--CHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 11 VSLLKDKGNAALQANNF-IEAIEAYSEAIKLDGTNHILFSNRSAAFAKEG--NYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
-...+.........|.+ ++|+..+.++|.++|++..+|+.++.++..+| .+++++..+++++..+|++..+|..++.
T Consensus 32 y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~ 111 (306)
T 3dra_A 32 YKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQL 111 (306)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 34455555555666666 57888888888888888888888888888888 8888888888888888888888888888
Q ss_pred HH----hhc---cCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCC
Q psy3014 88 AL----SYL---GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS 160 (570)
Q Consensus 88 ~~----~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (570)
++ ... +++++++.++.++++.+|.+..+|...
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R----------------------------------------- 150 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYR----------------------------------------- 150 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHH-----------------------------------------
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHH-----------------------------------------
Confidence 88 666 678888888888888888776666543
Q ss_pred ChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q psy3014 161 DPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNL 240 (570)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (570)
T Consensus 151 -------------------------------------------------------------------------------- 150 (306)
T 3dra_A 151 -------------------------------------------------------------------------------- 150 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHHHHHHHHccCHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC------HHHHHHHHHHHhhccc
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFE--EALAHYNKAVEFDPTDITFQNNIAAVYFERKE------YDQCIEQYIQKIENRA 312 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~------~~~A~~~~~~~l~~~~ 312 (570)
+.+....|.++ +++.+++++++.+|.|..+|..++.+....+. ++++++.+.+++..+|
T Consensus 151 -------------~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p 217 (306)
T 3dra_A 151 -------------KWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP 217 (306)
T ss_dssp -------------HHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS
T ss_pred -------------HHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC
Confidence 33333455555 78888888888888888888888888777776 7777777777777777
Q ss_pred ChhHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC
Q psy3014 313 DFKLIAKALQRIGNCYKKMEDWKNA-KVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKN 391 (570)
Q Consensus 313 ~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (570)
++ ..+|..++.++...|+...+ ..++.+++.... .+|.++.++..++.++.+.
T Consensus 218 ~n---~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 218 QN---PSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK-----------------------DQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp SC---HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG-----------------------TEESCHHHHHHHHHHHHHT
T ss_pred CC---ccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC-----------------------CCCCCHHHHHHHHHHHHcc
Confidence 77 77777777777777664443 334444444110 1255666666666666666
Q ss_pred CCHHHHHHHHHHHHh-cCCCCHHHHHHHHH
Q psy3014 392 GKYADAVKEYTEAIN-RNPDDPKYYSNRAA 420 (570)
Q Consensus 392 ~~~~~A~~~~~~al~-~~p~~~~~~~~la~ 420 (570)
|+.++|+++|+.+.+ .+|-....|...+.
T Consensus 272 ~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 272 KKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 666666666666664 56666666655543
No 74
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=3.3e-20 Score=192.53 Aligned_cols=315 Identities=15% Similarity=0.140 Sum_probs=242.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHH
Q psy3014 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYK 96 (570)
Q Consensus 17 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 96 (570)
.|.++...|.|++|..+|+++- .....+...+...|++++|+++++++ +.+.+|+.+|.++...|+++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-------~~~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-------VNTSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-------CHHHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence 4999999999999999999972 11112333444889999999999876 56889999999999999999
Q ss_pred HHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCch
Q psy3014 97 ESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPS 176 (570)
Q Consensus 97 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (570)
+|+..|.++ ++.
T Consensus 1123 EAIdsYiKA-----dD~--------------------------------------------------------------- 1134 (1630)
T 1xi4_A 1123 EAIDSYIKA-----DDP--------------------------------------------------------------- 1134 (1630)
T ss_pred HHHHHHHhc-----CCh---------------------------------------------------------------
Confidence 999999775 333
Q ss_pred hHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHH
Q psy3014 177 LMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNE 256 (570)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 256 (570)
..+..+|.+
T Consensus 1135 -----------------------------------------------------------------------say~eVa~~ 1143 (1630)
T 1xi4_A 1135 -----------------------------------------------------------------------SSYMEVVQA 1143 (1630)
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 334456777
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHH
Q psy3014 257 AYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKN 336 (570)
Q Consensus 257 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 336 (570)
+.+.|++++|+++|..+.+..++. .+...+|.+|.+++++++ ++.|. ..++ ...+..+|..+...|++++
T Consensus 1144 ~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~rlee-le~fI----~~~n----~ad~~~iGd~le~eg~Yee 1213 (1630)
T 1xi4_A 1144 ANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNRLAE-LEEFI----NGPN----NAHIQQVGDRCYDEKMYDA 1213 (1630)
T ss_pred HHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcCHHH-HHHHH----hCCC----HHHHHHHHHHHHhcCCHHH
Confidence 777888888888888888776442 223357788888887774 44332 1222 3455578888888888888
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy3014 337 AKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYS 416 (570)
Q Consensus 337 A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 416 (570)
|..+|.++-.-..-...+..+++++.|++.+.++ .+..+|...+.++...|+|..|..+... +.. +++.+.
T Consensus 1214 A~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLe 1284 (1630)
T 1xi4_A 1214 AKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELE 1284 (1630)
T ss_pred HHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHH
Confidence 8888888754444456666777788888888776 3458899999999999999999988774 433 455666
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhhCC-----CcHHHHHHHHHH
Q psy3014 417 NRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG--MQQQSKAIDAYEKALELDA-----SNAEAVEGYRQC 489 (570)
Q Consensus 417 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~ 489 (570)
.++..|...|.+++|+.++++++.++|.+...+..+|.++.+ -++..++++.|...+.+.| ++...|..+..+
T Consensus 1285 eli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~L 1364 (1630)
T 1xi4_A 1285 ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 1364 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999998888888887754 5688899999999999888 889999999999
Q ss_pred HHHhcCCHHHHH
Q psy3014 490 SIAVSSNPEEVR 501 (570)
Q Consensus 490 ~~~~~~~~e~~~ 501 (570)
|.+-|+.+.++.
T Consensus 1365 Y~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1365 YDKYEEYDNAII 1376 (1630)
T ss_pred HHhcccHHHHHH
Confidence 999888665553
No 75
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.88 E-value=1.6e-20 Score=170.39 Aligned_cols=199 Identities=8% Similarity=-0.014 Sum_probs=147.2
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHh---cCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCH
Q psy3014 262 NFEEALAHYNKAVEFDPTDITFQNNIAAVY----FER---KEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDW 334 (570)
Q Consensus 262 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 334 (570)
++++++.+++.++..+|++..+|..++.++ ... +++++++..+.++++.+|.+ ..+|...+.+....|.+
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn---y~aW~~R~~vl~~l~~~ 160 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN---HHVWSYRKWLVDTFDLH 160 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCT
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccc
Confidence 555555555555555555555555555555 444 45566666666666666665 56666666666666655
Q ss_pred H--HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC------HHHHHHHHHHHHh
Q psy3014 335 K--NAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGK------YADAVKEYTEAIN 406 (570)
Q Consensus 335 ~--~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~A~~~~~~al~ 406 (570)
+ +++.++.+++. .+|.+..+|...+.++...++ ++++++++.+++.
T Consensus 161 ~~~~EL~~~~~~i~--------------------------~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~ 214 (306)
T 3dra_A 161 NDAKELSFVDKVID--------------------------TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV 214 (306)
T ss_dssp TCHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH
Confidence 5 66666666665 666666666666666666665 8899999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcChHH-HHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-hCCCcHH
Q psy3014 407 RNPDDPKYYSNRAACYTKLAAFDL-GLKDCETCLKLD---PKFLKGWIRKGKILQGMQQQSKAIDAYEKALE-LDASNAE 481 (570)
Q Consensus 407 ~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~ 481 (570)
.+|++..+|+.++.++...|+... ....+.+++.++ |.++.++..+|.++.+.|+.++|+++|+.+.+ +||-...
T Consensus 215 ~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~ 294 (306)
T 3dra_A 215 KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSN 294 (306)
T ss_dssp HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHH
Confidence 999999999999999999998655 555777777776 88899999999999999999999999999996 8999999
Q ss_pred HHHHHHHH
Q psy3014 482 AVEGYRQC 489 (570)
Q Consensus 482 ~~~~l~~~ 489 (570)
.|...+..
T Consensus 295 yW~~~~~~ 302 (306)
T 3dra_A 295 FWDYQISK 302 (306)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99876654
No 76
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.88 E-value=2.2e-22 Score=164.93 Aligned_cols=147 Identities=14% Similarity=0.049 Sum_probs=133.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
.||.++...|++++|+..+++++. .+|..+..++.+|.+|+..|++++|+.+|+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~--------------------------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~ 55 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTP--------------------------SPRQKSIKGFYFAKLYYEAKEYDLAKKYIC 55 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSC--------------------------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcc--------------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 366777777777777777777777 899999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHH-HHHHHhhCCCcHH
Q psy3014 403 EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDA-YEKALELDASNAE 481 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~p~~~~ 481 (570)
++++++|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.
T Consensus 56 ~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~ 135 (150)
T 4ga2_A 56 TYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPA 135 (150)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999887765 5999999999999
Q ss_pred HHHHHHHHHHHhcC
Q psy3014 482 AVEGYRQCSIAVSS 495 (570)
Q Consensus 482 ~~~~l~~~~~~~~~ 495 (570)
++...+.++...|+
T Consensus 136 ~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 136 VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999988875
No 77
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.87 E-value=6.8e-21 Score=175.58 Aligned_cols=226 Identities=11% Similarity=0.090 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh---h
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT------DITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF---K 315 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~ 315 (570)
.....+...|.++...|++++|+.+|.+++.+.+. ...++..+|.+|...|++++|+.+|++++++.+.. .
T Consensus 35 ~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~ 114 (292)
T 1qqe_A 35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR 114 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 34556777788999999999999999999998532 25789999999999999999999999999887643 2
Q ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCH
Q psy3014 316 LIAKALQRIGNCYKKM-EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394 (570)
Q Consensus 316 ~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (570)
....++..+|.+|... |++++|+.+|++++...+... ..+....++..+|.++...|++
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--------------------~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--------------------SVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--------------------ChHHHHHHHHHHHHHHHHhCCH
Confidence 3467899999999996 999999999999998322100 0011256789999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHH-----HHHHHHHHH--hCC
Q psy3014 395 ADAVKEYTEAINRNPDDPK-------YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKG-----WIRKGKILQ--GMQ 460 (570)
Q Consensus 395 ~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~l~~~~~--~~g 460 (570)
++|+.+|++++...|++.. ++.++|.++..+|++++|+..|++++.++|+.... +..++..+. ..+
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999887643 68899999999999999999999999999987653 445666664 567
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy3014 461 QQSKAIDAYEKALELDASNAEAVEGYRQCS 490 (570)
Q Consensus 461 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 490 (570)
++++|+..|++++.++|.+..++..+....
T Consensus 255 ~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp THHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 899999999999999999888877777665
No 78
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.87 E-value=4.3e-21 Score=151.66 Aligned_cols=121 Identities=53% Similarity=0.913 Sum_probs=116.7
Q ss_pred HhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHH
Q psy3014 370 KAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 449 (570)
+..++|+.+..+..+|..+++.|+|++|+..|+++++.+|.++.+|+++|.++..+|++++|+..|+++++++|+++.+|
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 34489999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCS 490 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 490 (570)
+.+|.++..+|++++|+.+|+++++++|++++++..|+.|+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999875
No 79
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.87 E-value=1.2e-21 Score=201.72 Aligned_cols=184 Identities=8% Similarity=-0.075 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAV--------EFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKL 316 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 316 (570)
.++.+++..| ...|++++|+..|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|++
T Consensus 392 ~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-- 466 (681)
T 2pzi_A 392 TDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR-- 466 (681)
T ss_dssp TSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC--
T ss_pred CCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch--
Confidence 3444555555 67899999999999999 8889999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHH
Q psy3014 317 IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYAD 396 (570)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (570)
..+++.+|.++...|++++|+..|++++. .+|+++.++..+|.++...|++++
T Consensus 467 -~~a~~~lg~~~~~~g~~~~A~~~~~~al~--------------------------l~P~~~~~~~~lg~~~~~~g~~~~ 519 (681)
T 2pzi_A 467 -WRLVWYRAVAELLTGDYDSATKHFTEVLD--------------------------TFPGELAPKLALAATAELAGNTDE 519 (681)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------------HSTTCSHHHHHHHHHHHHHTCCCT
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCChHHHHHHHHHHHHcCChHH
Confidence 88999999999999999999999999998 788888999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Q psy3014 397 AVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQ 461 (570)
Q Consensus 397 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 461 (570)
+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++..+++++|.++...|+
T Consensus 520 -~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 520 -HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp -TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred -HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999999999999999999999877665
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.87 E-value=7.5e-21 Score=182.77 Aligned_cols=241 Identities=13% Similarity=0.136 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------CcchhhchhHHHhcccCHHHHHHHHhchhccCCC-------C
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGT------NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD-------W 78 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~ 78 (570)
..++.+|..++..|+|++|+..|++++...+. .+.+++.+|.+|...|++++|+..+++++.+.+. .
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 36778999999999999999999999987432 3568899999999999999999999999987543 3
Q ss_pred hhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCC
Q psy3014 79 PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF 158 (570)
Q Consensus 79 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (570)
..++..+|.++..+|++++|+..|++++++.+...
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--------------------------------------------- 216 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ--------------------------------------------- 216 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---------------------------------------------
Confidence 45788999999999999999999999987532110
Q ss_pred CCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy3014 159 LSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDK 238 (570)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (570)
T Consensus 217 -------------------------------------------------------------------------------- 216 (378)
T 3q15_A 217 -------------------------------------------------------------------------------- 216 (378)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccC
Q psy3014 239 NLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVE-----FDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD 313 (570)
Q Consensus 239 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 313 (570)
..+..+.++.++|.++...|++++|+.+|++++. .+|..+.++..+|.++...|++++|+..++++++..+.
T Consensus 217 ---~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 217 ---NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred ---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 0113456778899999999999999999999999 77888889999999999999999999999999977432
Q ss_pred --hhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q psy3014 314 --FKLIAKALQRIGNCYKKMED---WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNEL 388 (570)
Q Consensus 314 --~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (570)
++.....+..++.++...++ +.+|+..+++.- ..|.....+..+|.++
T Consensus 294 ~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---------------------------~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 294 RSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---------------------------LHAYIEACARSAAAVF 346 (378)
T ss_dssp TCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---------------------------ChhHHHHHHHHHHHHH
Confidence 11124456777888888888 677777766632 3455666777888888
Q ss_pred HHCCCHHHHHHHHHHHHhc
Q psy3014 389 FKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 389 ~~~~~~~~A~~~~~~al~~ 407 (570)
...|++++|..+|+++++.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 8888888888888888765
No 81
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.87 E-value=6.4e-21 Score=175.75 Aligned_cols=193 Identities=11% Similarity=0.076 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHh-cCHHHHHHHHHHHhhcccCh---
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD------ITFQNNIAAVYFER-KEYDQCIEQYIQKIENRADF--- 314 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~~l~~~~~~--- 314 (570)
..+.++.++|.++...|++++|+.+|++++.+.|.. ..++..+|.+|... |++++|+.+|++++++.|..
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 346678889999999999999999999999987654 46889999999996 99999999999999987753
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCH
Q psy3014 315 KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394 (570)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (570)
.....++..+|.++...|++++|+.+|++++...+.... ........+..+|.++...|++
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------~~~~~~~~~~~lg~~~~~~g~~ 215 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL-------------------SQWSLKDYFLKKGLCQLAATDA 215 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT-------------------TGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc-------------------ccHHHHHHHHHHHHHHHHcCCH
Confidence 223568999999999999999999999999984432100 0001234788999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHH-----HHHHHHHHHH--HhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy3014 395 ADAVKEYTEAINRNPDDPK-----YYSNRAACYT--KLAAFDLGLKDCETCLKLDPKFLKGWIRKGKIL 456 (570)
Q Consensus 395 ~~A~~~~~~al~~~p~~~~-----~~~~la~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 456 (570)
++|+.+|+++++++|+... .+..++..+. ..+++++|+..|++++.++|.....+..+-...
T Consensus 216 ~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 216 VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 9999999999999998655 3445566554 456799999999999999998877766655444
No 82
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=1.9e-18 Score=179.55 Aligned_cols=309 Identities=13% Similarity=0.146 Sum_probs=242.9
Q ss_pred HcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHH
Q psy3014 23 QANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTY 102 (570)
Q Consensus 23 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 102 (570)
..|++++|+++++++ +.+.+|+.+|.++...|++++|+..|.++ +++..|...|.++.+.|++++|+++|
T Consensus 1088 ~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 667777777777765 56899999999999999999999999886 78899999999999999999999999
Q ss_pred HHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhc
Q psy3014 103 EEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKL 182 (570)
Q Consensus 103 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (570)
..+.+..++. .+...++.++......
T Consensus 1158 ~mArk~~~e~-~Idt~LafaYAKl~rl----------------------------------------------------- 1183 (1630)
T 1xi4_A 1158 QMARKKARES-YVETELIFALAKTNRL----------------------------------------------------- 1183 (1630)
T ss_pred HHHHhhcccc-cccHHHHHHHHhhcCH-----------------------------------------------------
Confidence 9999887543 1222355555441000
Q ss_pred cCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccC
Q psy3014 183 KDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKN 262 (570)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 262 (570)
..+..... . .+...+..+|..+...|+
T Consensus 1184 ------eele~fI~----------------------------------------------~-~n~ad~~~iGd~le~eg~ 1210 (1630)
T 1xi4_A 1184 ------AELEEFIN----------------------------------------------G-PNNAHIQQVGDRCYDEKM 1210 (1630)
T ss_pred ------HHHHHHHh----------------------------------------------C-CCHHHHHHHHHHHHhcCC
Confidence 00000000 0 112455679999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3014 263 FEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFE 342 (570)
Q Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 342 (570)
|++|..+|.++ ..|..+|.++.++|++++|++.+.++ .+ ..+|...+.++...|++..|..+..
T Consensus 1211 YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n---~~aWkev~~acve~~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1211 YDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NS---TRTWKEVCFACVDGKEFRLAQMCGL 1274 (1630)
T ss_pred HHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CC---HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999996 58899999999999999999999998 33 6889999999999999999999887
Q ss_pred HHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy3014 343 KSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422 (570)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 422 (570)
. +. .+| +.+..++..|...|.|++|+.+++.++.++|.+...+..+|.+|
T Consensus 1275 ~-Ii--------------------------v~~---deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLy 1324 (1630)
T 1xi4_A 1275 H-IV--------------------------VHA---DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 1324 (1630)
T ss_pred h-hh--------------------------cCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHH
Confidence 5 33 333 34457888899999999999999999999988888887777777
Q ss_pred HH--hcChHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh------------CCCcHHHH
Q psy3014 423 TK--LAAFDLGLKDCETCLKLDP-----KFLKGWIRKGKILQGMQQQSKAIDAYEKALEL------------DASNAEAV 483 (570)
Q Consensus 423 ~~--~~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------~p~~~~~~ 483 (570)
.+ -++..++++.|...+.+.| ++...|..+..+|.+-|+++.|+..+-..... .+.|++++
T Consensus 1325 aKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~ely 1404 (1630)
T 1xi4_A 1325 SKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELY 1404 (1630)
T ss_pred HhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHH
Confidence 65 5677888888888888777 67888889999999999999999555444433 67888888
Q ss_pred HHHHHHHHHhc
Q psy3014 484 EGYRQCSIAVS 494 (570)
Q Consensus 484 ~~l~~~~~~~~ 494 (570)
+.....+....
T Consensus 1405 ykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1405 YRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHhhC
Confidence 88887777444
No 83
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.86 E-value=1.1e-20 Score=164.47 Aligned_cols=195 Identities=13% Similarity=0.105 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIG 325 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~ 325 (570)
.+..++..|..+...|++++|+..|++++..+|+++.+++..+. . ............+|
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~----------------~~~~~~~~~~~~lg 61 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----D----------------KNSEISSKLATELA 61 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----C----------------TTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----c----------------chhhhhHHHHHHHH
Confidence 45666777778888888888888888888888777776655331 0 01111244556699
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q psy3014 326 NCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAI 405 (570)
Q Consensus 326 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 405 (570)
.++...|++++|+..|++++. .+|+++.++..+|.++...|++++|+.+|++++
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 115 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQ--------------------------KAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH--------------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999 899999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhcC--hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 406 NRNPDDPKYYSNRAACYTKLAA--FDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 406 ~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
+++|+++.+++++|.+|...|+ ...+...+++++...| ...+++.+|.++...|++++|+.+|+++++++|+. .+.
T Consensus 116 ~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~ 193 (208)
T 3urz_A 116 QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQ 193 (208)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHH
T ss_pred HcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHH
Confidence 9999999999999999987765 4567788888765433 23468889999999999999999999999999974 444
Q ss_pred HHHHHH
Q psy3014 484 EGYRQC 489 (570)
Q Consensus 484 ~~l~~~ 489 (570)
..+..+
T Consensus 194 ~~l~~i 199 (208)
T 3urz_A 194 KTLDKI 199 (208)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455554
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.86 E-value=4.7e-20 Score=177.11 Aligned_cols=283 Identities=14% Similarity=0.058 Sum_probs=227.5
Q ss_pred chhhchhHHHhcccCHHHHHHHHhchhccCCCCh-----hHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHH
Q psy3014 46 ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWP-----KGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIK 120 (570)
Q Consensus 46 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 120 (570)
.++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++.+.|......
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 90 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH---- 90 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH----
Confidence 4567789999999999999999999999887643 2678899999999999999999999998755322111
Q ss_pred HHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCccc
Q psy3014 121 DVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMS 200 (570)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (570)
T Consensus 91 -------------------------------------------------------------------------------- 90 (373)
T 1hz4_A 91 -------------------------------------------------------------------------------- 90 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---
Q psy3014 201 STMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD--- 277 (570)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 277 (570)
....++..+|.++...|++++|+..+++++...
T Consensus 91 --------------------------------------------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 126 (373)
T 1hz4_A 91 --------------------------------------------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 126 (373)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 224456679999999999999999999999874
Q ss_pred -----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy3014 278 -----PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF--KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT 350 (570)
Q Consensus 278 -----p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 350 (570)
|....++..+|.++...|++++|...+++++...+.. .....++..+|.++...|++++|...+++++...+.
T Consensus 127 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 127 HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp TCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred ccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 3345677889999999999999999999999876542 123578889999999999999999999999874221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHH
Q psy3014 351 PEIRTLISEMEKKIKEEEKKAYIDPVKAEE--AKERGNELFKNGKYADAVKEYTEAINRNPDD----PKYYSNRAACYTK 424 (570)
Q Consensus 351 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~ 424 (570)
. ..+..... ....+.++...|++++|...+++++...|.. ...+..+|.++..
T Consensus 207 ~---------------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 265 (373)
T 1hz4_A 207 G---------------------KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL 265 (373)
T ss_dssp S---------------------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH
T ss_pred c---------------------CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHH
Confidence 0 11111111 1235566889999999999999998877653 3467889999999
Q ss_pred hcChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 425 LAAFDLGLKDCETCLKLDPK------FLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 425 ~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
.|++++|...+++++...+. ...++..+|.++...|++++|...+++++.+.+
T Consensus 266 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 266 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 99999999999999876442 234778899999999999999999999998865
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.86 E-value=2.8e-20 Score=164.43 Aligned_cols=188 Identities=14% Similarity=0.082 Sum_probs=157.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc---chhhchhHHHhcccCHHHHHHHHhchhccCCCChh---HHh
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH---ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPK---GYS 83 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 83 (570)
.+..++.+|..++..|+|++|+..|++++...|+++ .+++.+|.++...|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 467899999999999999999999999999999875 68999999999999999999999999999999875 799
Q ss_pred HHHHHHhh------------------ccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchH
Q psy3014 84 RKGSALSY------------------LGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNI 145 (570)
Q Consensus 84 ~la~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (570)
.+|.++.. .|++++|+..|+++++.+|++..+...+..+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~-------------------- 142 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL-------------------- 142 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH--------------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH--------------------
Confidence 99999876 6799999999999999999998765543333222
Q ss_pred HHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCC
Q psy3014 146 FVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPS 225 (570)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (570)
T Consensus 143 -------------------------------------------------------------------------------- 142 (225)
T 2yhc_A 143 -------------------------------------------------------------------------------- 142 (225)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCHHHHHH
Q psy3014 226 PPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDI---TFQNNIAAVYFERKEYDQCIE 302 (570)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~ 302 (570)
........+.+|.++...|++++|+..|+++++.+|+++ .++..+|.++..+|++++|+.
T Consensus 143 -----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 143 -----------------KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 002233445678888888888888888888888888875 578888888888888888888
Q ss_pred HHHHHhhcccCh
Q psy3014 303 QYIQKIENRADF 314 (570)
Q Consensus 303 ~~~~~l~~~~~~ 314 (570)
.++++....|++
T Consensus 206 ~~~~l~~~~~~~ 217 (225)
T 2yhc_A 206 VAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHCCSCC
T ss_pred HHHHHHhhCCCc
Confidence 888888777765
No 86
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.86 E-value=2.3e-20 Score=159.82 Aligned_cols=172 Identities=19% Similarity=0.161 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHH
Q psy3014 281 ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360 (570)
Q Consensus 281 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 360 (570)
...+..+|.++...|++++|+..++++++..|++ ..++..+|.++...|++++|+..+++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-------------- 70 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD---VDVALHLGIAYVKTGAVDRGTELLERSLA-------------- 70 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------
Confidence 3455566666666666666666666666666665 56666666666666666666666666666
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
..|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|+..+++++.
T Consensus 71 ------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 71 ------------DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp ------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 55666666666777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH
Q psy3014 441 LDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 481 (570)
..|.++.++..+|.++...|++++|..+++++++.+|++..
T Consensus 139 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 139 LRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred cCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 77777777777777777777777777777777777776543
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.86 E-value=3.1e-21 Score=158.07 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=127.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Q psy3014 286 NIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365 (570)
Q Consensus 286 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 365 (570)
.||.++...|++++|+..+++++...|+. +..++.+|.+|...|++++|+.+|+++++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~---~~~~~~la~~y~~~~~~~~A~~~~~~al~------------------- 59 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQK---SIKGFYFAKLYYEAKEYDLAKKYICTYIN------------------- 59 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHH---HTTHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------
Confidence 46788888899999999999999888887 78888999999999999999999999998
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHH-HHHHHhcCCC
Q psy3014 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKD-CETCLKLDPK 444 (570)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~-~~~al~~~p~ 444 (570)
.+|+++.+|..+|.++...|++++|+.+|+++++++|+++.+++.+|.++...|++++|... ++++++++|+
T Consensus 60 -------~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 60 -------VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp -------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred -------hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 88889999999999999999999999999999999999999999999999999998877665 5899999999
Q ss_pred CHHHHHHHHHHHHhCCC
Q psy3014 445 FLKGWIRKGKILQGMQQ 461 (570)
Q Consensus 445 ~~~~~~~l~~~~~~~g~ 461 (570)
++.++..++.++...|+
T Consensus 133 ~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 133 SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 99999999999888875
No 88
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=1.2e-21 Score=182.87 Aligned_cols=309 Identities=13% Similarity=0.125 Sum_probs=159.3
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHH
Q psy3014 20 AALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESI 99 (570)
Q Consensus 20 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 99 (570)
.....|+.++|.+++++. +++.+|..+|.++...|++++|++.|.++ +++.++...+..+...|++++|+
T Consensus 12 ll~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHH
Confidence 344678899999999998 33569999999999999999999999764 45668999999999999999999
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHH
Q psy3014 100 STYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMT 179 (570)
Q Consensus 100 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (570)
.+++.+.+..++ +.+...++.++...++.....+
T Consensus 82 ~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~--------------------------------------------- 115 (449)
T 1b89_A 82 KYLQMARKKARE-SYVETELIFALAKTNRLAELEE--------------------------------------------- 115 (449)
T ss_dssp ----------------------------CHHHHTT---------------------------------------------
T ss_pred HHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHH---------------------------------------------
Confidence 999988875433 4555555555544111110000
Q ss_pred hhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHH
Q psy3014 180 TKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYK 259 (570)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 259 (570)
++ .. .+..++..+|..+..
T Consensus 116 -f~-----------------------------------------------------------~~-pn~~a~~~IGd~~~~ 134 (449)
T 1b89_A 116 -FI-----------------------------------------------------------NG-PNNAHIQQVGDRCYD 134 (449)
T ss_dssp -TT-----------------------------------------------------------TC-C--------------
T ss_pred -HH-----------------------------------------------------------cC-CcHHHHHHHHHHHHH
Confidence 00 00 112378889999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHH
Q psy3014 260 KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKV 339 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 339 (570)
.|+|++|..+|.++ ..|..+|.++.++|++++|++.++++ ++ +.+|...+.++...|+++.|..
T Consensus 135 ~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~---~~~Wk~v~~aCv~~~ef~lA~~ 198 (449)
T 1b89_A 135 EKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NS---TRTWKEVCFACVDGKEFRLAQM 198 (449)
T ss_dssp --CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TC---HHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CC---chhHHHHHHHHHHcCcHHHHHH
Confidence 99999999999987 47889999999999999999999999 24 7889999999999999999977
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 340 YFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRA 419 (570)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 419 (570)
+... +. .+|+.. ..++..|.+.|++++|+.++++++.+++.+...+..+|
T Consensus 199 ~~l~-L~--------------------------~~ad~l---~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~ 248 (449)
T 1b89_A 199 CGLH-IV--------------------------VHADEL---EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 248 (449)
T ss_dssp TTTT-TT--------------------------TCHHHH---HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHH-HH--------------------------hCHhhH---HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 6654 22 455553 35788899999999999999999999999999999999
Q ss_pred HHHHH--hcChHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh------------CCCcH
Q psy3014 420 ACYTK--LAAFDLGLKDCETCLKLDP-----KFLKGWIRKGKILQGMQQQSKAIDAYEKALEL------------DASNA 480 (570)
Q Consensus 420 ~~~~~--~~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------~p~~~ 480 (570)
.+|.+ -++..+.++.|...+.+.| .++..|..+..+|.+.++++.|+..+-..... .+.|.
T Consensus 249 il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~ 328 (449)
T 1b89_A 249 ILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANV 328 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSST
T ss_pred HHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHH
Confidence 88865 5677888888888888878 78889999999999999999999887776655 67888
Q ss_pred HHHHHHHHHHH
Q psy3014 481 EAVEGYRQCSI 491 (570)
Q Consensus 481 ~~~~~l~~~~~ 491 (570)
++++.....+.
T Consensus 329 elyYkai~fyl 339 (449)
T 1b89_A 329 ELYYRAIQFYL 339 (449)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777776
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.85 E-value=4.1e-21 Score=197.82 Aligned_cols=188 Identities=13% Similarity=0.002 Sum_probs=176.8
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh--------hcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 275 EFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKI--------ENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 275 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
..+|+++.+++..| ...|++++|+..+++++ +.+|++ ..++..+|.++...|++++|+..|++++.
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 461 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSES---VELPLMEVRALLDLGDVAKATRKLDDLAE 461 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccc---hhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 45888888888777 78999999999999999 888998 89999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy3014 347 EHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA 426 (570)
Q Consensus 347 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 426 (570)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++++|.++...|
T Consensus 462 --------------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g 515 (681)
T 2pzi_A 462 --------------------------RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAG 515 (681)
T ss_dssp --------------------------HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT
T ss_pred --------------------------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 889999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 427 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
++++ +..|+++++++|++..+++++|.++..+|++++|+.+|+++++++|++..++.+++.++...+.
T Consensus 516 ~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 516 NTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred ChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999 9999999999999999999999999999999999999999999999999999999999877654
No 90
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.85 E-value=5.9e-20 Score=157.27 Aligned_cols=174 Identities=16% Similarity=0.221 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
.....+..+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|++ ..++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~ 82 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN---VKVATVL 82 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
|.++...|++++|+..+++++. ..|.++.++..+|.++...|++++|+.+++++
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 136 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAE--------------------------ANPINFNVRFRLGVALDNLGRFDEAIDSFKIA 136 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHh--------------------------cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 9999999999999999999998 78888999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHH
Q psy3014 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLK 447 (570)
Q Consensus 405 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 447 (570)
+...|.++.++..+|.++...|++++|+..+++++..+|++..
T Consensus 137 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 137 LGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred HhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 9999999999999999999999999999999999999887653
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.85 E-value=3.6e-20 Score=161.31 Aligned_cols=143 Identities=17% Similarity=0.185 Sum_probs=86.3
Q ss_pred cccchhHHHHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH
Q psy3014 238 KNLTDEQRSAKKEKE----------------LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCI 301 (570)
Q Consensus 238 ~~~~~~~~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 301 (570)
..+...|+++.+++. +|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus 29 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 108 (208)
T 3urz_A 29 QTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL 108 (208)
T ss_dssp HHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344556777777777 6777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhhcccChhHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHH
Q psy3014 302 EQYIQKIENRADFKLIAKALQRIGNCYKKMED--WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAE 379 (570)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 379 (570)
..|+++++++|++ +.+++.+|.+|...|+ ...+...+++++. ..|. ..
T Consensus 109 ~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~-~~ 158 (208)
T 3urz_A 109 RMYEKILQLEADN---LAANIFLGNYYYLTAEQEKKKLETDYKKLSS--------------------------PTKM-QY 158 (208)
T ss_dssp HHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHC---C--------------------------CCHH-HH
T ss_pred HHHHHHHHcCCCC---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--------------------------CCch-hH
Confidence 7777777777766 6666666666655443 2333444444332 2222 22
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q psy3014 380 EAKERGNELFKNGKYADAVKEYTEAINRNPD 410 (570)
Q Consensus 380 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 410 (570)
+++.+|.++...|++++|+.+|+++++++|+
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4445555555555555555555555555554
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.84 E-value=2.8e-19 Score=157.93 Aligned_cols=194 Identities=11% Similarity=0.068 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
.+..++.+|..++..|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|+++++.+|++.....+++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 56789999999999999999999999999999887 478999999999999999999999999999999876677999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
.+|.++...+.. .+.. +..++..+...|++++|+..|+
T Consensus 83 ~~g~~~~~~~~~-----~~~~-------------------------------------~~~~~~~~~~~~~~~~A~~~~~ 120 (225)
T 2yhc_A 83 MRGLTNMALDDS-----ALQG-------------------------------------FFGVDRSDRDPQQARAAFSDFS 120 (225)
T ss_dssp HHHHHHHHHHC--------------------------------------------------------CCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hhhh-------------------------------------hhccchhhcCcHHHHHHHHHHH
Confidence 999999877642 1111 2223444445555666666666
Q ss_pred HHHhcCCCCHHH-----------------HHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhCCCH
Q psy3014 403 EAINRNPDDPKY-----------------YSNRAACYTKLAAFDLGLKDCETCLKLDPKFL---KGWIRKGKILQGMQQQ 462 (570)
Q Consensus 403 ~al~~~p~~~~~-----------------~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~ 462 (570)
++++..|+++.+ ...+|.+|...|++++|+..|+++++..|+++ .+++.+|.++.++|++
T Consensus 121 ~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 121 KLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp HHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence 666665555433 26789999999999999999999999999876 6799999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHH
Q psy3014 463 SKAIDAYEKALELDASNAE 481 (570)
Q Consensus 463 ~~A~~~~~~al~~~p~~~~ 481 (570)
++|+..++++....|++.+
T Consensus 201 ~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 201 AQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHhhCCCchh
Confidence 9999999999999988643
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.83 E-value=1.3e-19 Score=166.78 Aligned_cols=164 Identities=21% Similarity=0.241 Sum_probs=141.6
Q ss_pred HccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc-----cChhHHHHHHHHHH
Q psy3014 259 KKKNFEEALAHYNKAVEF--------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR-----ADFKLIAKALQRIG 325 (570)
Q Consensus 259 ~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----~~~~~~~~~~~~l~ 325 (570)
..|++++|+.+|+++++. .|..+.++..+|.++...|++++|+..++++++.. ++++....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 468888888888888874 35668899999999999999999999999999775 44455589999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 326 NCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY-IDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 326 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
.++...|++++|+.+|++++... ++... .+|....++..+|.++...|++++|+.+++++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~-------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIR-------------------EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHH-------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHH-------------------HHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999998731 11111 25788999999999999999999999999999
Q ss_pred Hhc--------CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Q psy3014 405 INR--------NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441 (570)
Q Consensus 405 l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 441 (570)
++. .|....++..+|.++...|++++|+..+++++..
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 998 6667789999999999999999999999999976
No 94
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.83 E-value=3.9e-20 Score=146.14 Aligned_cols=117 Identities=32% Similarity=0.551 Sum_probs=113.5
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
.|..++.+..+|..++..|+|++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|+++.+|+.+|
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 88 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA 88 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 123 (570)
.++..+|++++|+..|+++++++|++..++..++.++
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999998887763
No 95
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.83 E-value=3.9e-18 Score=155.34 Aligned_cols=177 Identities=12% Similarity=0.003 Sum_probs=154.4
Q ss_pred HHHHHHcCCHH-HHHHHHHHHHccCCCCcchhhchhHHHhcccC----------HHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 18 GNAALQANNFI-EAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN----------YEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 18 g~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
.......|+++ +|+..+.+++..+|++..+|..++.++...+. +++++.+++.++..+|++..+|..++
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~ 115 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC 115 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 33445678776 89999999999999999999999999988876 78999999999999999999999999
Q ss_pred HHHhhccC--HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHH
Q psy3014 87 SALSYLGR--YKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY 164 (570)
Q Consensus 87 ~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (570)
.++...|+ +++++.++.++++.+|.|..+|.....+
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~v------------------------------------------ 153 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFV------------------------------------------ 153 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------------------------------------
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------------------------------------
Confidence 99999994 8999999999999999998877654433
Q ss_pred HHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhH
Q psy3014 165 VQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQ 244 (570)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (570)
T Consensus 154 -------------------------------------------------------------------------------- 153 (331)
T 3dss_A 154 -------------------------------------------------------------------------------- 153 (331)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHhh
Q psy3014 245 RSAKKEKELGNEAYKKKN-FEEALAHYNKAVEFDPTDITFQNNIAAVYFER--------------KEYDQCIEQYIQKIE 309 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~~l~ 309 (570)
....|. +++++.++.++++.+|.|..+|..++.++... +.++++++++.+++.
T Consensus 154 ------------l~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~ 221 (331)
T 3dss_A 154 ------------AAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 221 (331)
T ss_dssp ------------HHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH
T ss_pred ------------HHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH
Confidence 334555 68999999999999999999999999999887 568999999999999
Q ss_pred cccChhHHHHHHHHHHHHHHHc
Q psy3014 310 NRADFKLIAKALQRIGNCYKKM 331 (570)
Q Consensus 310 ~~~~~~~~~~~~~~l~~~~~~~ 331 (570)
.+|++ ..+|+.+..++...
T Consensus 222 ~~P~d---~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 222 TDPND---QSAWFYHRWLLGAG 240 (331)
T ss_dssp HSTTC---HHHHHHHHHHHHSS
T ss_pred hCCCC---HHHHHHHHHHHHhc
Confidence 99999 88887665555443
No 96
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.82 E-value=2.3e-19 Score=145.66 Aligned_cols=128 Identities=12% Similarity=0.095 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHH
Q psy3014 353 IRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432 (570)
Q Consensus 353 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 432 (570)
+...+.++..+...+++++..+|+++.+++.+|.++...|++++|+.+|++++..+|+++.+|+++|.++...|++++|+
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai 90 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAA 90 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHH
Confidence 33444444445555666677999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 433 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
..|++++.++|+++.+|+++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 91 ~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 91 DLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999999999999875
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.82 E-value=1.2e-19 Score=166.93 Aligned_cols=234 Identities=14% Similarity=0.138 Sum_probs=176.8
Q ss_pred HHcCCHHHHHHHHHHHHcc--------CCCCcchhhchhHHHhcccCHHHHHHHHhchhcc--------CCCChhHHhHH
Q psy3014 22 LQANNFIEAIEAYSEAIKL--------DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL--------KPDWPKGYSRK 85 (570)
Q Consensus 22 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 85 (570)
...|++++|+..|+++++. +|..+.++..+|.++...|++++|+..+++++.. .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567888888888888874 3566888999999999999999999999999977 46678899999
Q ss_pred HHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHH
Q psy3014 86 GSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYV 165 (570)
Q Consensus 86 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (570)
|.++...|++++|+..|++++.......
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------------------------------- 119 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVL---------------------------------------------------- 119 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHH----------------------------------------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHc----------------------------------------------------
Confidence 9999999999999999999987521000
Q ss_pred HHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHH
Q psy3014 166 QMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQR 245 (570)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (570)
....|.
T Consensus 120 --------------------------------------------------------------------------~~~~~~ 125 (283)
T 3edt_B 120 --------------------------------------------------------------------------GKFHPD 125 (283)
T ss_dssp --------------------------------------------------------------------------CTTCHH
T ss_pred --------------------------------------------------------------------------CCCChH
Confidence 001135
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh---
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEF--------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF--- 314 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--- 314 (570)
...++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+..++++++..+..
T Consensus 126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 205 (283)
T 3edt_B 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5677888999999999999999999999998 67778899999999999999999999999999764321
Q ss_pred ---hHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHH
Q psy3014 315 ---KLIAKALQRIGNCYKKMEDWK------NAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERG 385 (570)
Q Consensus 315 ---~~~~~~~~~l~~~~~~~~~~~------~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 385 (570)
......+..++..+...+... .+...++.... ..|..+.++..+|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~la 259 (283)
T 3edt_B 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--------------------------DSPTVNTTLRSLG 259 (283)
T ss_dssp SCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--------------------------CCHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--------------------------CCHHHHHHHHHHH
Confidence 111445555565555443322 22222222222 5577777888888
Q ss_pred HHHHHCCCHHHHHHHHHHHHhc
Q psy3014 386 NELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 386 ~~~~~~~~~~~A~~~~~~al~~ 407 (570)
.++...|++++|+.+|+++++.
T Consensus 260 ~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 260 ALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888887764
No 98
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.82 E-value=1.7e-17 Score=151.10 Aligned_cols=207 Identities=11% Similarity=0.056 Sum_probs=185.3
Q ss_pred HHccCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC----------HHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q psy3014 258 YKKKNFE-EALAHYNKAVEFDPTDITFQNNIAAVYFERKE----------YDQCIEQYIQKIENRADFKLIAKALQRIGN 326 (570)
Q Consensus 258 ~~~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (570)
...|.++ +|+.++.+++.++|++..+|..++.++...+. +++++..+..++..+|.+ ..+|...+.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn---y~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---YGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Confidence 4566666 89999999999999999999999999988876 789999999999999999 999999999
Q ss_pred HHHHcCC--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC-HHHHHHHHHH
Q psy3014 327 CYKKMED--WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGK-YADAVKEYTE 403 (570)
Q Consensus 327 ~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~ 403 (570)
++...+. +++++.++.+++. .+|.+..+|...+.+....|. +++++.++.+
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~--------------------------~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~ 170 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLE--------------------------ADERNFHCWDYRRFVAAQAAVAPAEELAFTDS 170 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 9999994 8999999999998 899999999999999999999 6999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHh--------------cChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC----------
Q psy3014 404 AINRNPDDPKYYSNRAACYTKL--------------AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM---------- 459 (570)
Q Consensus 404 al~~~p~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---------- 459 (570)
+++.+|.+..+|..++.++... +.++++++++.+++..+|++..+|+.+..++...
T Consensus 171 ~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~ 250 (331)
T 3dss_A 171 LITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEK 250 (331)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHH
Confidence 9999999999999999999988 6689999999999999999999998666666555
Q ss_pred -CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 460 -QQQSKAIDAYEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 460 -g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
+.++++++++++++++.|++.-.+..++.+...+
T Consensus 251 ~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~ 285 (331)
T 3dss_A 251 STVLQSELESCKELQELEPENKWCLLTIILLMRAL 285 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhh
Confidence 4589999999999999999966665555544443
No 99
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.81 E-value=3.9e-19 Score=156.92 Aligned_cols=225 Identities=8% Similarity=-0.042 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHHhcCHHHHHHHHHHHhhcccChh--
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNI-------AAVYFERKEYDQCIEQYIQKIENRADFK-- 315 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~~l~~~~~~~-- 315 (570)
+....++..|.-+ ..+++..|...|.+++..+|+.+++|..+ +.++...+++.+++..+++.+.+.|..-
T Consensus 5 ~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 5 DRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred HHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 3455667777776 68999999999999999999999999999 8999999999999999999998777651
Q ss_pred ----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHH
Q psy3014 316 ----------------LIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAE 379 (570)
Q Consensus 316 ----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 379 (570)
....+...++.++...|++++|...|..++. ..|...
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------------------------~~p~~~- 136 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--------------------------AGSEHL- 136 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------------------------TTCHHH-
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------------------------cCCchH-
Confidence 1245666788999999999999999999988 788888
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcChHHHHHHHHHHHhcC--CC-CHHHHHHHHH
Q psy3014 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDD--PKYYSNRAACYTKLAAFDLGLKDCETCLKLD--PK-FLKGWIRKGK 454 (570)
Q Consensus 380 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~l~~ 454 (570)
..+.+|.+++..++|++|+.+|+.+....+.. ..+++.+|.++..+|++++|+.+|++++... |. .+.+++.+|.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gl 216 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAM 216 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence 99999999999999999999999887653221 3589999999999999999999999998654 65 6679999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHH
Q psy3014 455 ILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 455 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e 498 (570)
++.++|+.++|...|++++..+|+ ..++..|...-..+.-+..
T Consensus 217 aL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~~~~~~t~~ 259 (282)
T 4f3v_A 217 ARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPSYRLKTTTA 259 (282)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTTCCCCCCCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCCCCCCCCcH
Confidence 999999999999999999999999 8888777655444443333
No 100
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.81 E-value=6.8e-17 Score=163.10 Aligned_cols=451 Identities=9% Similarity=-0.036 Sum_probs=255.3
Q ss_pred hhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccC---HHHHHHHHhchhccCC--C
Q psy3014 3 NLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN---YEKALEDAEKTISLKP--D 77 (570)
Q Consensus 3 ~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p--~ 77 (570)
.+...|.+...|..........++++.|...|++++...|.....|...+....+.|+ ++.+...|++++...| .
T Consensus 58 ~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~ 137 (679)
T 4e6h_A 58 MIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNN 137 (679)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCC
T ss_pred HHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCC
Confidence 4567788899999999999999999999999999999999999999999988888888 9999999999999984 5
Q ss_pred ChhHHhHHHHHHhhccCH----HH----HHHHHHHhhcc----CCCcHHHHHHHHHHHHHh---------hhccCCCccc
Q psy3014 78 WPKGYSRKGSALSYLGRY----KE----SISTYEEGLKL----DPNNEQMKEAIKDVRNQE---------MNDMNRGDPF 136 (570)
Q Consensus 78 ~~~~~~~la~~~~~~g~~----~~----A~~~~~~al~~----~p~~~~~~~~l~~~~~~~---------~~~~~~~~~~ 136 (570)
++..|..........++. ++ ....|++|+.. ++....+|.......... .....+...+
T Consensus 138 sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy 217 (679)
T 4e6h_A 138 DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLY 217 (679)
T ss_dssp CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHH
Confidence 677887777666555543 33 34778887753 666667776665543320 0000000111
Q ss_pred cccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccC--cc------HHHHHHHHhcCcccCCCCCCCC
Q psy3014 137 ANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKD--PR------MMTTLSVLLGVNMSSTMGDGDA 208 (570)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~ 208 (570)
.+++ ..|.......-..|......+ +.......+.. +. ....+..... .+...
T Consensus 218 ~raL----------~iP~~~~~~~w~~Y~~fe~~~--~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~-~l~r~------ 278 (679)
T 4e6h_A 218 KTLL----------CQPMDCLESMWQRYTQWEQDV--NQLTARRHIGELSAQYMNARSLYQDWLNITK-GLKRN------ 278 (679)
T ss_dssp HHHT----------TSCCSSHHHHHHHHHHHHHHH--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCCCC------
T ss_pred HHHH----------hCccHHHHHHHHHHHHHHHhc--CcchHHHHHHHhhHHHHHHHHHHHHHHHHHH-hHhhc------
Confidence 1111 111100000001111111111 01001000000 00 0011111111 00000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHcc-------CHHHHHHHHHHHHhcCCCCH
Q psy3014 209 EEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKK-------NFEEALAHYNKAVEFDPTDI 281 (570)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~p~~~ 281 (570)
.+...........|. . .. ........|......-...+ ..+.....|++++...|.++
T Consensus 279 -----~p~~~~~~~~~~~p~----~----~~--~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~ 343 (679)
T 4e6h_A 279 -----LPITLNQATESNLPK----P----NE--YDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP 343 (679)
T ss_dssp -----CCSSSTTCCTTTSCC----T----TC--CCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred -----cccccccchhccCCC----C----ch--hHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCH
Confidence 000000000000000 0 00 12233455555544433322 13456788999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHH-HHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHH
Q psy3014 282 TFQNNIAAVYFERKEYDQCI-EQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360 (570)
Q Consensus 282 ~~~~~la~~~~~~~~~~~A~-~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 360 (570)
.+|+..+..+...|+.++|. ..|++++...|.+ ...+...+.+....|+++.|...|++++...+.. ....
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s---~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~-----~~~~ 415 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS---AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD-----LAAL 415 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-----hhhh
Confidence 99999999999999999997 9999999999988 7889999999999999999999999998732100 0000
Q ss_pred HHHHHH-HHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcC-hHHHHHHHHH
Q psy3014 361 EKKIKE-EEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR-NPDDPKYYSNRAACYTKLAA-FDLGLKDCET 437 (570)
Q Consensus 361 ~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~ 437 (570)
...... -............+|...+....+.|..+.|...|.+|++. .+....+|...|.+....++ ++.|...|+.
T Consensus 416 ~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~ 495 (679)
T 4e6h_A 416 MEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLEL 495 (679)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred hhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 000000 00000000123345555555555556666666666666655 32334455555555444433 5666666666
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHhcC
Q psy3014 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDA---SNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 438 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~ 495 (570)
+++..|+++..|...+......|+.+.|...|++++...| ....+|..+.......|+
T Consensus 496 ~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 496 GLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 6666666666555555555556666666666666666555 344555556555555555
No 101
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=2.3e-20 Score=174.24 Aligned_cols=309 Identities=15% Similarity=0.117 Sum_probs=157.5
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSA 88 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 88 (570)
+.+..|..+|.++...|++++|++.|.++ .++..+...+.++...|++++|+.+++.+++..|+ +.+...++.+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~ 103 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHH
Confidence 44579999999999999999999999774 46678999999999999999999999999986544 7788889999
Q ss_pred HhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHH
Q psy3014 89 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMI 168 (570)
Q Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (570)
|.++|++.++.+.++. |+ ..++..++..+...+....+...+
T Consensus 104 Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y-------------------------------- 145 (449)
T 1b89_A 104 LAKTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLLY-------------------------------- 145 (449)
T ss_dssp -----CHHHHTTTTTC-----C-----------------CTTTHHHHH--------------------------------
T ss_pred HHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHHH--------------------------------
Confidence 9999999999887752 43 346777766665522222211111
Q ss_pred HHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHH
Q psy3014 169 KEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAK 248 (570)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (570)
..+.
T Consensus 146 ----------------------------------------------------------------------------~~a~ 149 (449)
T 1b89_A 146 ----------------------------------------------------------------------------NNVS 149 (449)
T ss_dssp ----------------------------------------------------------------------------HHTT
T ss_pred ----------------------------------------------------------------------------HHhh
Confidence 1223
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCY 328 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 328 (570)
.+..+|.++.+.|++++|++.++++ +++..|...+.++...|+++.|..+... +...|+. ...+..+|
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~------l~~lv~~Y 217 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE------LEELINYY 217 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH------HHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh------HHHHHHHH
Confidence 4678999999999999999999999 5899999999999999999999887775 3456654 33588899
Q ss_pred HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH--CCCHHHHHHHHHHHHh
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK--NGKYADAVKEYTEAIN 406 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~ 406 (570)
.+.|++++|+.++++++. .++.....+..+|.++.+ -++..+.++.|...+.
T Consensus 218 ek~G~~eEai~lLe~aL~--------------------------le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in 271 (449)
T 1b89_A 218 QDRGYFEELITMLEAALG--------------------------LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 271 (449)
T ss_dssp HHTTCHHHHHHHHHHHTT--------------------------STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC
T ss_pred HHCCCHHHHHHHHHHHhC--------------------------CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence 999999999999999999 667777777777777654 3456666666666666
Q ss_pred cCC-----CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q psy3014 407 RNP-----DDPKYYSNRAACYTKLAAFDLGLKDCETCLKL------------DPKFLKGWIRKGKILQGMQQQSKAIDAY 469 (570)
Q Consensus 407 ~~p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (570)
+.| .++..|..+..+|...++|+.|+...-..... .+.+.+.++.....|. +....++..+
T Consensus 272 i~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~l 349 (449)
T 1b89_A 272 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDL 349 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHH
Confidence 666 66677788888888888888887766554333 4566777777666666 5556667777
Q ss_pred HHHH--hhCC
Q psy3014 470 EKAL--ELDA 477 (570)
Q Consensus 470 ~~al--~~~p 477 (570)
..++ .+||
T Consensus 350 l~~l~~~ld~ 359 (449)
T 1b89_A 350 LMVLSPRLDH 359 (449)
T ss_dssp HHHHGGGCCH
T ss_pred HHHHHhccCc
Confidence 7777 4444
No 102
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.80 E-value=1.4e-17 Score=152.25 Aligned_cols=207 Identities=9% Similarity=-0.070 Sum_probs=168.1
Q ss_pred HHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-c-CHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHH
Q psy3014 254 GNEAYKKK-NFEEALAHYNKAVEFDPTDITFQNNIAAVYFER-K-EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKK 330 (570)
Q Consensus 254 a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~-~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 330 (570)
+.++...| .+++++.++++++..+|++..+|..++.++... + ++++++..+.++++.+|.+ ..+|...+.+...
T Consensus 95 ~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN---y~AW~~R~wvl~~ 171 (349)
T 3q7a_A 95 FSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN---YHTWAYLHWLYSH 171 (349)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Confidence 33333455 488888889999988999999998888888887 7 8888999999999888888 8888888888888
Q ss_pred cCCHH--------HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC-------HH
Q psy3014 331 MEDWK--------NAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGK-------YA 395 (570)
Q Consensus 331 ~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 395 (570)
.|.++ +++.++.+++. .+|.+..+|..++.++...++ ++
T Consensus 172 l~~~~~~~~~~~~eELe~~~k~I~--------------------------~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 172 FSTLGRISEAQWGSELDWCNEMLR--------------------------VDGRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred hccccccchhhHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHhccccccchHHHH
Confidence 77766 67777777776 899999999999999999987 79
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCh--------------------HHHHHHHHHHHhcC------CCCHHHH
Q psy3014 396 DAVKEYTEAINRNPDDPKYYSNRAACYTKLAAF--------------------DLGLKDCETCLKLD------PKFLKGW 449 (570)
Q Consensus 396 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~--------------------~~A~~~~~~al~~~------p~~~~~~ 449 (570)
++++++.+++..+|++..+|+.+..++...|+. ..-...+...+... +.++.++
T Consensus 226 eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 226 DELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 999999999999999999999999999988875 22233333333222 4678899
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHH-hhCCCcHHHHHHHHHH
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKAL-ELDASNAEAVEGYRQC 489 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~ 489 (570)
..++.+|...|+.++|.+.++... +.||-....|...+..
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 999999999999999999999987 7899988888766554
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.80 E-value=3.1e-19 Score=151.04 Aligned_cols=163 Identities=11% Similarity=0.044 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHH
Q psy3014 282 TFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEME 361 (570)
Q Consensus 282 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 361 (570)
..++.+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la~~~~~~g~~~~A~~~~~~a~~--------------- 68 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSR---GDVKLAKADCLLETKQFELAQELLATIPL--------------- 68 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS---HHHHHHHHHHHHHTTCHHHHHHHHTTCCG---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHhhh---------------
Confidence 334455555555555555555555555555555 55555555555555555555555555554
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 362 KKIKEEEKKAYIDPVKAEEAKERGNELF-KNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
..| ++..+...+.+.. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|++++.
T Consensus 69 -----------~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 69 -----------EYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp -----------GGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -----------ccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 333 3333333332211 112233466777777777777777777777777777777777777777777
Q ss_pred cCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 441 LDPKF--LKGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 441 ~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
.+|+. +.++..+|.++..+|+.++|+..|++++.
T Consensus 137 ~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 137 VNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 77664 44677777777777777777777776654
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.80 E-value=4.9e-19 Score=149.77 Aligned_cols=171 Identities=7% Similarity=0.052 Sum_probs=132.7
Q ss_pred CCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHH
Q psy3014 41 DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIK 120 (570)
Q Consensus 41 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 120 (570)
+|.....++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| ++.....++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 4555667788888888888888888888888888888888888888888888888888888888888888 654433222
Q ss_pred HHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCccc
Q psy3014 121 DVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMS 200 (570)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (570)
.+..
T Consensus 81 ~~~~---------------------------------------------------------------------------- 84 (176)
T 2r5s_A 81 KLEL---------------------------------------------------------------------------- 84 (176)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1110
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q psy3014 201 STMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD 280 (570)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 280 (570)
...+...+|+..|+++++.+|++
T Consensus 85 ---------------------------------------------------------~~~~~~~~a~~~~~~al~~~P~~ 107 (176)
T 2r5s_A 85 ---------------------------------------------------------HQQAAESPELKRLEQELAANPDN 107 (176)
T ss_dssp ---------------------------------------------------------HHHHTSCHHHHHHHHHHHHSTTC
T ss_pred ---------------------------------------------------------HhhcccchHHHHHHHHHHhCCCC
Confidence 01122235788899999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 281 ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 281 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
+.+++.+|.++...|++++|+..|+++++.+|+... ..++..+|.++...|+.++|+..|++++.
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQD-GEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT-THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh-HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999999999999999998886411 45888899999999999999999988875
No 105
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.79 E-value=2.2e-17 Score=150.94 Aligned_cols=259 Identities=10% Similarity=0.012 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhccc-CHHHHHHHHhchhccCCCChhHHhHHHHHHhh
Q psy3014 13 LLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEG-NYEKALEDAEKTISLKPDWPKGYSRKGSALSY 91 (570)
Q Consensus 13 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 91 (570)
++-.........+..++|+..+.++|.++|++..+|..++.++..+| .+++++..+++++..+|++..+|..++.++..
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33344444445556679999999999999999999999999999999 59999999999999999999999999999999
Q ss_pred c-c-CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHH
Q psy3014 92 L-G-RYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIK 169 (570)
Q Consensus 92 ~-g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (570)
. + ++++++.++.++++.+|.|..+|.....+....+.....
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~------------------------------------- 178 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRI------------------------------------- 178 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCC-------------------------------------
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccccc-------------------------------------
Confidence 8 8 999999999999999999999988776666541100000
Q ss_pred HHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHH
Q psy3014 170 EIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKK 249 (570)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (570)
T Consensus 179 -------------------------------------------------------------------------------- 178 (349)
T 3q7a_A 179 -------------------------------------------------------------------------------- 178 (349)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-------HHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKE-------YDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-------~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
....+.+++++++++++.+|.|..+|..++.++...+. ++++++++++++..+|++ ..+|.
T Consensus 179 ---------~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n---~SaW~ 246 (349)
T 3q7a_A 179 ---------SEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN---VSAWN 246 (349)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC---HHHHH
T ss_pred ---------chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC---HHHHH
Confidence 00124589999999999999999999999999999887 799999999999999999 89999
Q ss_pred HHHHHHHHcCCH--------------------HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy3014 323 RIGNCYKKMEDW--------------------KNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAK 382 (570)
Q Consensus 323 ~l~~~~~~~~~~--------------------~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 382 (570)
.+..++...|.. ..-.......+..... ....+..+.++.
T Consensus 247 Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~s~~al~ 306 (349)
T 3q7a_A 247 YLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP--------------------EDTPLPVPLALE 306 (349)
T ss_dssp HHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC--------------------SSCCSCCHHHHH
T ss_pred HHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc--------------------cccCCCcHHHHH
Confidence 988888877764 1111111111110000 001245566666
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHH-hcCCCCHHHHHHHHH
Q psy3014 383 ERGNELFKNGKYADAVKEYTEAI-NRNPDDPKYYSNRAA 420 (570)
Q Consensus 383 ~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~ 420 (570)
.++.++...|+.++|.++++... +.+|-....|...+.
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 66777766677667777666665 446655555554443
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.78 E-value=5.6e-18 Score=155.34 Aligned_cols=169 Identities=11% Similarity=0.083 Sum_probs=151.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHH
Q psy3014 277 DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTL 356 (570)
Q Consensus 277 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 356 (570)
.|.+...++.+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++.
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~~~---------- 179 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN---GEIGLLLAETLIALNRSEDAEAVLXTIPL---------- 179 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHTTCHHHHHHHHTTSCG----------
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc---hhHHHHHHHHHHHCCCHHHHHHHHHhCch----------
Confidence 38888899999999999999999999999999999998 88999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHH
Q psy3014 357 ISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCE 436 (570)
Q Consensus 357 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 436 (570)
.+|+........+..+...++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|.
T Consensus 180 ----------------~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~ 243 (287)
T 3qou_A 180 ----------------QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF 243 (287)
T ss_dssp ----------------GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 6676666667777778888888999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 437 TCLKLDPKF--LKGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 437 ~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
+++..+|++ ..++..+|.++...|+.++|...|++++.
T Consensus 244 ~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 244 GHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999988 88899999999999999999999998875
No 107
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.78 E-value=7.6e-18 Score=137.27 Aligned_cols=127 Identities=17% Similarity=0.124 Sum_probs=116.5
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH
Q psy3014 367 EEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL 446 (570)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 446 (570)
+++++..+|.++..++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 89 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP 89 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 44555599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
.+++.+|.++..+|++++|+.+|+++++++|+++........+...+
T Consensus 90 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 136 (148)
T 2vgx_A 90 RFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSML 136 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999877655555444433
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.78 E-value=7.2e-18 Score=154.61 Aligned_cols=168 Identities=10% Similarity=0.003 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQR 323 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 323 (570)
|.....++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+. ......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~---~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT---RYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH---HHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch---HHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999977 677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Q psy3014 324 IGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTE 403 (570)
Q Consensus 324 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 403 (570)
.+..+...++.++|+..+++++. .+|+++.+++.+|.++...|++++|+..|.+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~--------------------------~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVA--------------------------ENPEDAALATQLALQLHQVGRNEEALELLFG 244 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHh--------------------------cCCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 78888899999999999999999 8999999999999999999999999999999
Q ss_pred HHhcCCCC--HHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 404 AINRNPDD--PKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 404 al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
+++.+|++ ..++..++.++...|+.++|+..|++++.
T Consensus 245 ~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 245 HLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999998 88999999999999999999999999875
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.77 E-value=1.1e-17 Score=169.84 Aligned_cols=165 Identities=15% Similarity=0.129 Sum_probs=118.3
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHH
Q psy3014 260 KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKV 339 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 339 (570)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|++ ..++..+|.++...|++++|+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH---PEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC---HHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHH
Confidence 4677888888888888888888888888888888888888888888888888887 7788888888888888888888
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 340 YFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRA 419 (570)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 419 (570)
.|++++. .+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|
T Consensus 79 ~~~~al~--------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 132 (568)
T 2vsy_A 79 LLQQASD--------------------------AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132 (568)
T ss_dssp HHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHh--------------------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8888877 67777778888888888888888888888888888888888888888
Q ss_pred HHHHHh---cChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 420 ACYTKL---AAFDLGLKDCETCLKLDPKFLKGWIRKG 453 (570)
Q Consensus 420 ~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~ 453 (570)
.++... |++++|+..++++++.+|++...+..++
T Consensus 133 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 133 NWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 888888 8888888888888888887776666555
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.77 E-value=8.8e-18 Score=155.95 Aligned_cols=106 Identities=16% Similarity=0.103 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
..++..+|.+|.. |++++|+.+|++++...+.. ...+....++..+|.++...|++++|
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--------------------~~~~~~~~~~~~lg~~~~~~g~~~~A 174 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--------------------ERLRQAAELIGKASRLLVRQQKFDEA 174 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--------------------CChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 4556666666666 66666666666666521100 00011245566666667777777777
Q ss_pred HHHHHHHHhcCCCC------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC
Q psy3014 398 VKEYTEAINRNPDD------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF 445 (570)
Q Consensus 398 ~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 445 (570)
+.+|++++.+.|.+ ..++..+|.++...|++++|+..|++++ ++|..
T Consensus 175 ~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 175 AASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 77777666654432 2355666666666666666666666666 66654
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.77 E-value=7.4e-18 Score=171.03 Aligned_cols=165 Identities=10% Similarity=0.042 Sum_probs=141.8
Q ss_pred hcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy3014 294 RKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYI 373 (570)
Q Consensus 294 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 373 (570)
.|++++|+..++++++.+|++ ..++..+|.++...|++++|+..|+++++ .
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------------------~ 52 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD---FVAWLMLADAELGMGDTTAGEMAVQRGLA--------------------------L 52 (568)
T ss_dssp -------------------CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHT--------------------------T
T ss_pred CccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------h
Confidence 478999999999999999999 89999999999999999999999999999 8
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKG 453 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 453 (570)
+|.++.++..+|.++...|++++|+.+|+++++.+|+++.++.++|.++...|++++|+..|+++++.+|++..++..+|
T Consensus 53 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 132 (568)
T 2vsy_A 53 HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132 (568)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC---CCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy3014 454 KILQGM---QQQSKAIDAYEKALELDASNAEAVEGYR 487 (570)
Q Consensus 454 ~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~ 487 (570)
.++..+ |++++|...|+++++.+|++...+..++
T Consensus 133 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 133 NWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 999999 9999999999999999999887776666
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.77 E-value=6.1e-17 Score=141.14 Aligned_cols=187 Identities=13% Similarity=0.055 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC----CHHHHHH
Q psy3014 264 EEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME----DWKNAKV 339 (570)
Q Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~ 339 (570)
.+|+..|+++.+. .++.+++.+|.+|...+++++|+..|+++.+. .+ +.+++.+|.+|.. + ++++|+.
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~---~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GD---GDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TC---HHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CC---HHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 4678899999875 78999999999999999999999999999875 45 7899999999998 7 8999999
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCC--CCHH
Q psy3014 340 YFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK----NGKYADAVKEYTEAINRNP--DDPK 413 (570)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p--~~~~ 413 (570)
+|+++.. +.++.+++.+|.++.. .+++++|+.+|+++.+..| .++.
T Consensus 75 ~~~~A~~----------------------------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~ 126 (212)
T 3rjv_A 75 LAEKAVE----------------------------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVD 126 (212)
T ss_dssp HHHHHHH----------------------------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHH
T ss_pred HHHHHHH----------------------------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHH
Confidence 9999965 4578899999999988 8999999999999999887 3589
Q ss_pred HHHHHHHHHHH----hcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC-C-----CHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 414 YYSNRAACYTK----LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM-Q-----QQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 414 ~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
+++++|.+|.. .+++++|+.+|+++++. |.++.+++.+|.+|... | ++++|+.+|+++.+.. ++.+.
T Consensus 127 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~ 203 (212)
T 3rjv_A 127 AQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGC 203 (212)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHH
Confidence 99999999999 88999999999999998 77788999999999764 3 9999999999999884 56666
Q ss_pred HHHHHH
Q psy3014 484 EGYRQC 489 (570)
Q Consensus 484 ~~l~~~ 489 (570)
..++.+
T Consensus 204 ~~l~~l 209 (212)
T 3rjv_A 204 EEFDRI 209 (212)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666544
No 113
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.76 E-value=1.1e-17 Score=135.72 Aligned_cols=129 Identities=14% Similarity=0.119 Sum_probs=117.9
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC
Q psy3014 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF 445 (570)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 445 (570)
.+++++..+|.+...++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 34455559999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 446 LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
+.+++.+|.++..+|++++|+.+|+++++++|+++........+...+.
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE 134 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998887776666655544
No 114
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.76 E-value=3.3e-19 Score=167.27 Aligned_cols=200 Identities=14% Similarity=0.170 Sum_probs=172.5
Q ss_pred HcCCHHHHHHHHHH----HHccCCCCcchhhchhHHHh------------cccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 23 QANNFIEAIEAYSE----AIKLDGTNHILFSNRSAAFA------------KEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 23 ~~~~~~~A~~~~~~----al~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
..+.+++|+..++. ++.++|.. +|..+|.... .++++++|+..+++++..+|+.+.++..+|
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g 154 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG 154 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence 34578999999999 99999986 5666665543 678899999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ 166 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (570)
.++...|++++|+..|+++++++|++.....
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~------------------------------------------------- 185 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSN------------------------------------------------- 185 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS-------------------------------------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCCh-------------------------------------------------
Confidence 9999999999999999999999997631000
Q ss_pred HHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHH
Q psy3014 167 MIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRS 246 (570)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (570)
.......+..
T Consensus 186 ----------------------------------------------------------------------~~~~~~~~~~ 195 (336)
T 1p5q_A 186 ----------------------------------------------------------------------EEAQKAQALR 195 (336)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Confidence 0001112355
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGN 326 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (570)
+.++.++|.++...|++++|+.+|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++ ..++..++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~a~~~l~~ 272 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN---KAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHcCCHHHH-HHHHHHHhc
Q psy3014 327 CYKKMEDWKNA-KVYFEKSMS 346 (570)
Q Consensus 327 ~~~~~~~~~~A-~~~~~~~~~ 346 (570)
++...|++++| ...|++++.
T Consensus 273 ~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 556777765
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.76 E-value=5e-17 Score=150.85 Aligned_cols=199 Identities=18% Similarity=0.163 Sum_probs=158.6
Q ss_pred ccCHHHHHHHHHHHHhcCCC-------C----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccC---hhHHHHHHHHHH
Q psy3014 260 KKNFEEALAHYNKAVEFDPT-------D----ITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD---FKLIAKALQRIG 325 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~~p~-------~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~~~~l~ 325 (570)
.|++++|..+++++.+..+. + ...+...|.+|...|++++|+..|.+++.+.+. ......++..+|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35555666666655543221 1 123444578899999999999999999977543 234477899999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 326 NCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDP-VKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 326 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
.+|...|++++|+.+|++++...+.. .++ ....++..+|.++.. |++++|+.+|+++
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~---------------------g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVEN---------------------GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTT---------------------TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHc---------------------CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 99999999999999999999743210 122 246788899999998 9999999999999
Q ss_pred HhcCCCC------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy3014 405 INRNPDD------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF------LKGWIRKGKILQGMQQQSKAIDAYEKA 472 (570)
Q Consensus 405 l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a 472 (570)
+.+.|.. ..++.++|.++..+|++++|+.+|++++.+.|.+ ..++..+|.++..+|++++|+.+|+++
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9987643 5689999999999999999999999999986543 347888999999999999999999999
Q ss_pred HhhCCCcHH
Q psy3014 473 LELDASNAE 481 (570)
Q Consensus 473 l~~~p~~~~ 481 (570)
+ ++|+...
T Consensus 222 l-~~p~~~~ 229 (307)
T 2ifu_A 222 Y-SIPGFSG 229 (307)
T ss_dssp T-TSTTSTT
T ss_pred h-CCCCCCC
Confidence 9 9997653
No 116
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.76 E-value=1.7e-17 Score=146.45 Aligned_cols=206 Identities=5% Similarity=-0.001 Sum_probs=177.6
Q ss_pred hhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhch-------hHHHhcccCHHHHHHHHhchhccCCCC
Q psy3014 6 SLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNR-------SAAFAKEGNYEKALEDAEKTISLKPDW 78 (570)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (570)
.+.+....++..|.-+ ..+++.+|...|.+++..+|+.+.+|.++ +.++...++..+++..+++.+.+.|..
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~ 80 (282)
T 4f3v_A 2 HMTDRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMST 80 (282)
T ss_dssp HHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGG
T ss_pred CchHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence 3567788889999987 69999999999999999999999999999 899999999999999999999999987
Q ss_pred hhHHhH---------------------HHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCcccc
Q psy3014 79 PKGYSR---------------------KGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFA 137 (570)
Q Consensus 79 ~~~~~~---------------------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 137 (570)
..+++. +|.++...|++++|.+.|..++...|++.
T Consensus 81 l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~------------------------ 136 (282)
T 4f3v_A 81 LNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL------------------------ 136 (282)
T ss_dssp GCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH------------------------
T ss_pred hhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH------------------------
Confidence 666665 77899999999999999999888776433
Q ss_pred ccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCC
Q psy3014 138 NLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQP 217 (570)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (570)
T Consensus 137 -------------------------------------------------------------------------------- 136 (282)
T 4f3v_A 137 -------------------------------------------------------------------------------- 136 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhc
Q psy3014 218 PSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD--ITFQNNIAAVYFERK 295 (570)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~ 295 (570)
..+.+|.+++..+++++|+..|+++....+.. ..+++.+|.++..+|
T Consensus 137 -------------------------------~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 137 -------------------------------VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp -------------------------------HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred -------------------------------HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC
Confidence 44557888889999999999999887653221 358999999999999
Q ss_pred CHHHHHHHHHHHhhcc--cChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC
Q psy3014 296 EYDQCIEQYIQKIENR--ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHR 349 (570)
Q Consensus 296 ~~~~A~~~~~~~l~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 349 (570)
++++|+..|++++... |.. ...+++.+|.++..+|+.++|...|++++...|
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~--~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEAC--ARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTT--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHhcCCCCccc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999999999998543 441 278999999999999999999999999999444
No 117
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3.5e-17 Score=129.89 Aligned_cols=119 Identities=35% Similarity=0.585 Sum_probs=114.6
Q ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGK 454 (570)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 454 (570)
|..+..+..+|..++..|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|++++.++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhhC------CCcHHHHHHHHHHHHHh
Q psy3014 455 ILQGMQQQSKAIDAYEKALELD------ASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 455 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~ 493 (570)
++..+|++++|+.+|+++++++ |++..++..+..+..++
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 99999999999988764
No 118
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.75 E-value=6.1e-18 Score=137.25 Aligned_cols=118 Identities=11% Similarity=0.010 Sum_probs=98.2
Q ss_pred HHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHH
Q psy3014 300 CIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAE 379 (570)
Q Consensus 300 A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 379 (570)
+-..+++++.++|++ ..+++.+|.++...|++++|+..|++++. .+|.++.
T Consensus 21 ~~~~l~~al~l~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~--------------------------~~P~~~~ 71 (151)
T 3gyz_A 21 SGATLKDINAIPDDM---MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--------------------------YDFYNVD 71 (151)
T ss_dssp TSCCTGGGCCSCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHH
T ss_pred CCCCHHHHhCCCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCCHH
Confidence 345566677778887 78888888888888888888888888888 7888888
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH
Q psy3014 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL 446 (570)
Q Consensus 380 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 446 (570)
+|..+|.++...|++++|+.+|++++.++|+++.+|+++|.+|..+|++++|+..|++++.+.|+.+
T Consensus 72 ~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 72 YIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888764
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.74 E-value=1.4e-19 Score=169.82 Aligned_cols=201 Identities=16% Similarity=0.207 Sum_probs=158.7
Q ss_pred HccCHHHHHHHHHH----HHhcCCCCHHHHHHHHHHHH------------HhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 259 KKKNFEEALAHYNK----AVEFDPTDITFQNNIAAVYF------------ERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 259 ~~~~~~~A~~~~~~----al~~~p~~~~~~~~la~~~~------------~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
..+.+++|+..+.. ++.+.|.. ++..+|.... .++++++|+..+++++...|+. +.++.
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~---a~~~~ 151 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQ---STIVK 151 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHH---HHHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHH---HHHHH
Confidence 35578999999999 88898886 4555554432 5677888988888888888888 99999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
.+|.++...|++++|+..|++++...+...... .+......|....++.++|.++...|++++|+.+|+
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-----------~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 220 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS-----------NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN 220 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC-----------SHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCC-----------hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999443210000 000000122236888889999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHH-HHHHHHHHhh
Q psy3014 403 EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKA-IDAYEKALEL 475 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~ 475 (570)
++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..+|.++..+|++++| ...|++++..
T Consensus 221 ~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 221 KALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998999999999999988888 5567766654
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.74 E-value=4.8e-18 Score=155.14 Aligned_cols=104 Identities=22% Similarity=0.317 Sum_probs=100.7
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSA 88 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 88 (570)
.++..++.+|..++..|+|++|+..|++++..+|+++.+++++|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCHHHHHHHHHHhhccCCCc
Q psy3014 89 LSYLGRYKESISTYEEGLKLDPNN 112 (570)
Q Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~ 112 (570)
+..+|++++|+..|+++++++|++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999998865
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.73 E-value=1.6e-17 Score=151.77 Aligned_cols=198 Identities=17% Similarity=0.180 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIG 325 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~ 325 (570)
.+..+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|++ ..+++.+|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS---VKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---HHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Confidence 467888999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q psy3014 326 NCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAI 405 (570)
Q Consensus 326 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 405 (570)
.++...|++++|+..|++++. .+|+++..+........ ...++..+.....
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~--------------------------l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 130 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS--------------------------LAKEQRLNFGDDIPSAL---RIAKKKRWNSIEE 130 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--------------------------HHHHTTCCCCSHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--------------------------hCccchhhHHHHHHHHH---HHHHHHHHHHHHH
Confidence 999999999999999999998 44443211111111111 1222333333444
Q ss_pred hcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhhCC
Q psy3014 406 NRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM-QQQSKAIDAYEKALELDA 477 (570)
Q Consensus 406 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p 477 (570)
...|.++.+...++.+. .|++++|++.++++++.+|++......++.++... +.+++|...|.++.+..+
T Consensus 131 ~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 131 RRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp TCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 56777777777777654 78999999999999999998888888888777666 778889999998877543
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=5.5e-17 Score=161.84 Aligned_cols=193 Identities=11% Similarity=0.060 Sum_probs=176.4
Q ss_pred HHccC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC----------HHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q psy3014 258 YKKKN-FEEALAHYNKAVEFDPTDITFQNNIAAVYFERKE----------YDQCIEQYIQKIENRADFKLIAKALQRIGN 326 (570)
Q Consensus 258 ~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (570)
...|+ .++|+..+++++..+|++..+|..++.++...|+ +++++..++++++.+|++ ..+|...+.
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~---y~aW~hR~w 115 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---YGTWHHRCW 115 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Confidence 34444 4678999999999999999999999999999998 999999999999999999 999999999
Q ss_pred HHHHcC--CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC-CHHHHHHHHHH
Q psy3014 327 CYKKME--DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNG-KYADAVKEYTE 403 (570)
Q Consensus 327 ~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~ 403 (570)
++...+ ++++++.++.++++ .+|.+..+|...+.+....| .++++++++.+
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~--------------------------~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~ 169 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLE--------------------------ADERNFHCWDYRRFVAAQAAVAPAEELAFTDS 169 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHT
T ss_pred HHHHcccccHHHHHHHHHHHHh--------------------------hccccccHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 999999 77999999999999 89999999999999999999 89999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHh--------------cChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH-----
Q psy3014 404 AINRNPDDPKYYSNRAACYTKL--------------AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK----- 464 (570)
Q Consensus 404 al~~~p~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~----- 464 (570)
+++.+|.+..+|+.++.++... +.+++|++++.+++..+|++..+|+.++.++...+++++
T Consensus 170 ~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~ 249 (567)
T 1dce_A 170 LITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVH 249 (567)
T ss_dssp TTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEE
T ss_pred HHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeee
Confidence 9999999999999999999885 668999999999999999999999999999999998776
Q ss_pred -------HHHHHHHHHhhCCCc
Q psy3014 465 -------AIDAYEKALELDASN 479 (570)
Q Consensus 465 -------A~~~~~~al~~~p~~ 479 (570)
|+.+|.+++.++|..
T Consensus 250 ~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 250 VSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp EETTTTEEEEEEEEEECTTBTT
T ss_pred eccCCceEEEEeccceeccccc
Confidence 667788888888763
No 123
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.72 E-value=1e-15 Score=136.97 Aligned_cols=186 Identities=10% Similarity=-0.056 Sum_probs=157.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccc--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3014 266 ALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA--DFKLIAKALQRIGNCYKKMEDWKNAKVYFEK 343 (570)
Q Consensus 266 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 343 (570)
|+..+++.+...+.+...+..+|.++...|++++|++.+.+.+..+| ++ .+++..++.++..+|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~---lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGT---TELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTH---HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCc---HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78888888887666777788999999999999999999999998886 66 89999999999999999999999999
Q ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHHhcCCh------hhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCC--CHH
Q psy3014 344 SMSEHRTPEIRTLISEMEKKIKEEEKKAYIDP------VKAEEAKERGNELFKNG--KYADAVKEYTEAINRNPD--DPK 413 (570)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~--~~~ 413 (570)
+.+ .+| +.......-|++.+..| ++.+|...|+++.+..|+ .+.
T Consensus 162 ~~~--------------------------~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~ 215 (310)
T 3mv2_B 162 YTN--------------------------AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQL 215 (310)
T ss_dssp HHH--------------------------HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHH
T ss_pred HHh--------------------------cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHH
Confidence 887 566 23333444465566656 999999999999888886 344
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhc----------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 414 YYSNRAACYTKLAAFDLGLKDCETCLKL----------DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 414 ~~~~la~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
.+++ ++.++|++++|...++.+++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++.+.
T Consensus 216 lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 216 GLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 4444 899999999999999988776 58899999999999999998 99999999999999999876
Q ss_pred HH
Q psy3014 484 EG 485 (570)
Q Consensus 484 ~~ 485 (570)
..
T Consensus 291 d~ 292 (310)
T 3mv2_B 291 HH 292 (310)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 124
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=4.1e-17 Score=129.45 Aligned_cols=118 Identities=23% Similarity=0.364 Sum_probs=112.7
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
|.+++.++.+|..++..|+|++|+..|++++..+|+++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHHhhccC------CCcHHHHHHHHHHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLD------PNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~ 125 (570)
++..+|++++|+..|+++++++ |++..++..+..+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999 9999998888877643
No 125
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.72 E-value=1.2e-14 Score=146.81 Aligned_cols=408 Identities=9% Similarity=0.008 Sum_probs=272.6
Q ss_pred hhhHHhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCC--CCcchhhchhHHHhcccCH--------HHHHHHHhch
Q psy3014 5 QSLVYEVSLLKDKGNAALQANN---FIEAIEAYSEAIKLDG--TNHILFSNRSAAFAKEGNY--------EKALEDAEKT 71 (570)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~--------~~A~~~~~~a 71 (570)
...|.....|..-+..-...|+ ++.+..+|++++...| .++..|..........++. +.....|++|
T Consensus 94 ~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErA 173 (679)
T 4e6h_A 94 DRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVV 173 (679)
T ss_dssp HHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 4456677888888888888899 9999999999999984 4666776665544444443 3344788887
Q ss_pred hc---c-CCCChhHHhHHHHHHh---------hccCHHHHHHHHHHhhccCCCcH-HHHHHHHHHHHHhhhccCCCcccc
Q psy3014 72 IS---L-KPDWPKGYSRKGSALS---------YLGRYKESISTYEEGLKLDPNNE-QMKEAIKDVRNQEMNDMNRGDPFA 137 (570)
Q Consensus 72 l~---~-~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~ 137 (570)
+. . +|.....|........ ..++.+.+...|++++.+-..+. ..+......-.. .+...+...+.
T Consensus 174 l~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~-~~~~~a~~~~~ 252 (679)
T 4e6h_A 174 VDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQD-VNQLTARRHIG 252 (679)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHH-HCTTTHHHHHH
T ss_pred HHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHh-cCcchHHHHHH
Confidence 75 3 6766677766665543 34567889999999997532322 233222222111 00000000000
Q ss_pred ccCCC----chHHH-------Hhhh-CCCC---------C--CCCCC---hHHHHHHHHHhhCchhHHhhccCccHHHHH
Q psy3014 138 NLFSD----PNIFV-------QLQL-DPRT---------K--PFLSD---PSYVQMIKEIQKDPSLMTTKLKDPRMMTTL 191 (570)
Q Consensus 138 ~~~~~----~~~~~-------~~~~-~~~~---------~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (570)
..... ...+. .+.. .|.. . ..... ..+...+.--..++..........++...+
T Consensus 253 e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Y 332 (679)
T 4e6h_A 253 ELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVY 332 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHH
Confidence 00000 00000 0000 0000 0 00000 111122211122111000000000111112
Q ss_pred HHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHH-HHH
Q psy3014 192 SVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEAL-AHY 270 (570)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~ 270 (570)
. ..+...|..+..|+..+..+...|+.++|. ..|
T Consensus 333 e---------------------------------------------~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 333 M---------------------------------------------QAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp H---------------------------------------------HHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred H---------------------------------------------HHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 2 222334567899999999999999999997 999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc-----------cCh--------hHHHHHHHHHHHHHHHc
Q psy3014 271 NKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR-----------ADF--------KLIAKALQRIGNCYKKM 331 (570)
Q Consensus 271 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----------~~~--------~~~~~~~~~l~~~~~~~ 331 (570)
++++...|.+...|..++.+....|++++|..+|++++... |.+ .....+|...+.+..+.
T Consensus 368 ~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 368 KLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999752 321 11356788888888889
Q ss_pred CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCC
Q psy3014 332 EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYI-DPVKAEEAKERGNELFKNG-KYADAVKEYTEAINRNP 409 (570)
Q Consensus 332 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p 409 (570)
|..+.|...|.++++ . .+....+|...+.+....+ +++.|..+|+.+++..|
T Consensus 448 ~~l~~AR~vf~~A~~--------------------------~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 448 QGLAASRKIFGKCRR--------------------------LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp HCHHHHHHHHHHHHH--------------------------TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH--------------------------hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 999999999999987 3 3334566777777777765 49999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy3014 410 DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK---FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484 (570)
Q Consensus 410 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 484 (570)
+++..|...+......|+.+.|...|++++...|+ ....|......-...|+.+.+...++++.+..|+++.+..
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~ 579 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEE 579 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHH
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHH
Confidence 99999999999999999999999999999999883 5677888888889999999999999999999999865543
No 126
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.71 E-value=8e-16 Score=123.65 Aligned_cols=135 Identities=30% Similarity=0.559 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHH
Q psy3014 319 KALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAV 398 (570)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 398 (570)
.++..+|.++...|++++|+..+++++. ..|.++..+..+|.++...|++++|+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~~a~~~~~~~~~~~A~ 55 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALE--------------------------LDPRSAEAWYNLGNAYYKQGDYDEAI 55 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHH--------------------------cCCcchhHHHHHHHHHHHhcCHHHHH
Confidence 4678899999999999999999999998 77888899999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 399 KEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 399 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|..+|++++..+|+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 56 EYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q psy3014 479 N 479 (570)
Q Consensus 479 ~ 479 (570)
+
T Consensus 136 ~ 136 (136)
T 2fo7_A 136 S 136 (136)
T ss_dssp C
T ss_pred C
Confidence 4
No 127
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.70 E-value=3.1e-16 Score=124.00 Aligned_cols=114 Identities=24% Similarity=0.365 Sum_probs=102.7
Q ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC-------HH
Q psy3014 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF-------LK 447 (570)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~ 447 (570)
++.+.++..+|..++..|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|++ ..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999998765 35
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy3014 448 GWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489 (570)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 489 (570)
++.++|.++..+|++++|+++|+++++..|+ ++....+..+
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 7889999999999999999999999999986 5555555443
No 128
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.70 E-value=4.2e-16 Score=129.98 Aligned_cols=122 Identities=28% Similarity=0.479 Sum_probs=113.1
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
..+..+..++.+|.+++..|++++|+.+|+++++.+|+++.+++++|.++...|++++|+..|++++.++|+++.+++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH--HHHHHHHHHhc
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDASNAEAV--EGYRQCSIAVS 494 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~~~ 494 (570)
|.++..+|++++|+.+|+++++++|++..++ ..+..+..+++
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~ 129 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIE 129 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998854 45555555554
No 129
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.69 E-value=1.8e-17 Score=131.98 Aligned_cols=117 Identities=20% Similarity=0.254 Sum_probs=106.7
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-------Ccc-----hhhchhHHHhcccCHHHHHHHHhchhcc-
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGT-------NHI-----LFSNRSAAFAKEGNYEKALEDAEKTISL- 74 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~- 74 (570)
...+..++.+|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+.+|++++++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 457899999999999999999999999999999999 333 9999999999999999999999999999
Q ss_pred ------CCCChhHH----hHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q psy3014 75 ------KPDWPKGY----SRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRN 124 (570)
Q Consensus 75 ------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 124 (570)
+|++..+| +++|.++..+|++++|+.+|+++++++|++..+...+..+..
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMME 147 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999988766555554443
No 130
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.69 E-value=7.4e-17 Score=128.40 Aligned_cols=118 Identities=18% Similarity=0.253 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHhcChHHHHHHHHHHHhc---
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPD-------DPK-----YYSNRAACYTKLAAFDLGLKDCETCLKL--- 441 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~~~~~~A~~~~~~al~~--- 441 (570)
.+..+...|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+..|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4667889999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ----CCCCHHHH----HHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 442 ----DPKFLKGW----IRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 442 ----~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
+|++..+| +++|.++..+|++++|+.+|+++++++|++..+...+..+.....
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999888877777766554
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.69 E-value=1.9e-16 Score=128.98 Aligned_cols=118 Identities=13% Similarity=0.090 Sum_probs=94.9
Q ss_pred HHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHH
Q psy3014 302 EQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEA 381 (570)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 381 (570)
..+++++..+|++ ..+++.+|.++...|++++|+..|++++. .+|.++.+|
T Consensus 8 ~~~~~al~~~p~~---~~~~~~~g~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~ 58 (148)
T 2vgx_A 8 GTIAMLNEISSDT---LEQLYSLAFNQYQSGXYEDAHXVFQALCV--------------------------LDHYDSRFF 58 (148)
T ss_dssp CSHHHHTTCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHH
T ss_pred hhHHHHHcCCHhh---HHHHHHHHHHHHHcCChHHHHHHHHHHHH--------------------------cCcccHHHH
Confidence 4567777777777 77788888888888888888888888877 777788888
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHH
Q psy3014 382 KERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKG 448 (570)
Q Consensus 382 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 448 (570)
+.+|.++...|++++|+.+|++++.++|+++.+++++|.++...|++++|+..|+++++++|+++..
T Consensus 59 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 59 LGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 8888888888888888888888888888888888888888888888888888888888887776654
No 132
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.68 E-value=1.5e-16 Score=128.93 Aligned_cols=120 Identities=16% Similarity=0.078 Sum_probs=111.4
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHh
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (570)
+...|.++..++.+|..++..|+|++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+++.+++
T Consensus 11 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 11 RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q psy3014 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123 (570)
Q Consensus 84 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 123 (570)
.+|.++..+|++++|+..|+++++++|+++........+.
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 9999999999999999999999999998876655444443
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.68 E-value=9.6e-16 Score=122.82 Aligned_cols=123 Identities=53% Similarity=0.948 Sum_probs=119.0
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
..|..+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
|.++...|++++|+.+|+++++.+|++..++..++.++..+|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999988764
No 134
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.68 E-value=5.9e-15 Score=128.51 Aligned_cols=173 Identities=9% Similarity=-0.032 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc----CHHHHHHHHHHHhhcccChhHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK----EYDQCIEQYIQKIENRADFKLIAKA 320 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~~l~~~~~~~~~~~~ 320 (570)
.++.+++.+|.++...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+..|+++.+ +.+ +.+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~---~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGS---KSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTC---HHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCC---HHH
Confidence 57899999999999999999999999999875 689999999999998 7 99999999999965 456 889
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCCh--hhHHHHHHHHHHHHH----
Q psy3014 321 LQRIGNCYKK----MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDP--VKAEEAKERGNELFK---- 390 (570)
Q Consensus 321 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~---- 390 (570)
++.+|.+|.. .+++++|+.+|+++.. ..| ..+.+++.+|.+|..
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~--------------------------~~~~~~~~~a~~~Lg~~y~~g~g~ 141 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAAR--------------------------DSESDAAVDAQMLLGLIYASGVHG 141 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTS--------------------------STTSHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHH--------------------------cCCCcchHHHHHHHHHHHHcCCCC
Confidence 9999999998 8999999999999998 666 468999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-c-----ChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 391 NGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL-A-----AFDLGLKDCETCLKLDPKFLKGWIRKGK 454 (570)
Q Consensus 391 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~ 454 (570)
.+++++|+.+|+++++. |.++.+++++|.+|... | ++++|+.+|+++++... ..+...++.
T Consensus 142 ~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~--~~A~~~l~~ 208 (212)
T 3rjv_A 142 PEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF--DTGCEEFDR 208 (212)
T ss_dssp SCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 89999999999999998 77888999999999875 3 89999999999998753 444544443
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.68 E-value=2.4e-15 Score=120.05 Aligned_cols=124 Identities=33% Similarity=0.557 Sum_probs=120.1
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
.+|..+..+..+|..+...|++++|+..|++++...|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCC
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSN 496 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 496 (570)
|.++...|++++|+.+|+++++++|++..++..++.++..+|+.
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999998863
No 136
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.68 E-value=3.4e-15 Score=130.65 Aligned_cols=137 Identities=19% Similarity=0.157 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
...++.+|.++...|++++|+..|++++. . ++.++..+|.++...|++++|
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~--------------------------~---~~~~~~~lg~~~~~~g~~~~A 56 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD--------------------------P---HSRICFNIGCMYTILKNMTEA 56 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS--------------------------C---CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC--------------------------C---ChHHHHHHHHHHHHcCCHHHH
Confidence 45678899999999999999999998864 2 467899999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHhCCC
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL----------------KGWIRKGKILQGMQQ 461 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~g~ 461 (570)
+..|++++..+|+++.+++.+|.++...|++++|+..|++++...|.+. .+++.+|.++..+|+
T Consensus 57 ~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 136 (213)
T 1hh8_A 57 EKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136 (213)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999888766 999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHH
Q psy3014 462 QSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 462 ~~~A~~~~~~al~~~p~~~~~~ 483 (570)
+++|+.+|+++++++|++....
T Consensus 137 ~~~A~~~~~~al~~~p~~~~~~ 158 (213)
T 1hh8_A 137 WKKAEEQLALATSMKSEPRHSK 158 (213)
T ss_dssp HHHHHHHHHHHHTTCCSGGGGH
T ss_pred HHHHHHHHHHHHHcCcccccch
Confidence 9999999999999999875433
No 137
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.67 E-value=1.9e-15 Score=119.45 Aligned_cols=117 Identities=46% Similarity=0.756 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh----hHHH
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF----KLIA 318 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~ 318 (570)
.++.+.++.++|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|++ ...+
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 357888999999999999999999999999999999999999999999999999999999999999988765 2456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHH
Q psy3014 319 KALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISE 359 (570)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 359 (570)
.++..+|.++...|++++|+.+|++++...++++....+..
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~~ 124 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKE 124 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHHHH
Confidence 78999999999999999999999999997777665544443
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.67 E-value=2.1e-16 Score=136.43 Aligned_cols=124 Identities=23% Similarity=0.315 Sum_probs=116.6
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHhcChHHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDP----------------KYYSNRAACYTKLAAFDLGLKDCE 436 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~~ 436 (570)
..+..+..+..+|..++..|++++|+..|.+++...|.++ .++.++|.++...|++++|+.+++
T Consensus 33 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4566778899999999999999999999999999998887 899999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCC
Q psy3014 437 TCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSN 496 (570)
Q Consensus 437 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 496 (570)
+++.++|+++.+++.+|.++..+|++++|+.+|+++++++|++..++..++.++..+++.
T Consensus 113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988863
No 139
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.67 E-value=1.1e-15 Score=127.21 Aligned_cols=120 Identities=19% Similarity=0.315 Sum_probs=112.4
Q ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHhcChHHHHHHHHH
Q psy3014 376 VKAEEAKERGNELFKNGKYADAVKEYTEAINR------------------NPDDPKYYSNRAACYTKLAAFDLGLKDCET 437 (570)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 437 (570)
..+..+...|..++..|+|++|+..|.+++.. +|.++.++.++|.++..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45778899999999999999999999999998 667778999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHhcC
Q psy3014 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA-EAVEGYRQCSIAVSS 495 (570)
Q Consensus 438 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~ 495 (570)
++.++|+++.+++.+|.++..+|++++|+.+|+++++++|+++ .+...+..+...+..
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 778888888877654
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.67 E-value=7.5e-16 Score=130.39 Aligned_cols=132 Identities=12% Similarity=0.197 Sum_probs=117.0
Q ss_pred HcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q psy3014 330 KMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP 409 (570)
Q Consensus 330 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 409 (570)
..|++++|+..+++++. .+|.++.++..+|.++...|++++|+.+|+++++.+|
T Consensus 22 ~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 75 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIR--------------------------ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG 75 (177)
T ss_dssp -----CCCCHHHHHHHH--------------------------HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred hccCHHHHHHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 44566666666666666 8999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH-HHHhcCh--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy3014 410 DDPKYYSNRAAC-YTKLAAF--DLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486 (570)
Q Consensus 410 ~~~~~~~~la~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 486 (570)
+++.++..+|.+ +...|++ ++|+..+++++..+|+++.+++.+|.++...|++++|+.+|+++++++|++......+
T Consensus 76 ~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 999999999999 8899999 9999999999999999999999999999999999999999999999999987655443
Q ss_pred H
Q psy3014 487 R 487 (570)
Q Consensus 487 ~ 487 (570)
.
T Consensus 156 ~ 156 (177)
T 2e2e_A 156 E 156 (177)
T ss_dssp H
T ss_pred H
Confidence 3
No 141
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.66 E-value=6.4e-15 Score=118.28 Aligned_cols=132 Identities=33% Similarity=0.616 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCY 328 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 328 (570)
+++.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|++ ..++..+|.++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc---hHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555555555555555555554 44455555555
Q ss_pred HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 408 (570)
...|++++|+..+++++. ..|..+.++..+|.++...|++++|...+.+++..+
T Consensus 80 ~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALE--------------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHH--------------------------hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 555555555555555544 344444444445555555555555555555544444
Q ss_pred C
Q psy3014 409 P 409 (570)
Q Consensus 409 p 409 (570)
|
T Consensus 134 ~ 134 (136)
T 2fo7_A 134 P 134 (136)
T ss_dssp T
T ss_pred C
Confidence 4
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=1.5e-15 Score=151.45 Aligned_cols=171 Identities=13% Similarity=0.098 Sum_probs=160.9
Q ss_pred CHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Q psy3014 296 EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMED----------WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365 (570)
Q Consensus 296 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 365 (570)
..++|+..+.+++..+|++ ..+|...+.++...|+ +++++..+++++.
T Consensus 44 ~~eeal~~~~~~l~~nP~~---~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~------------------- 101 (567)
T 1dce_A 44 LDESVLELTSQILGANPDF---ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR------------------- 101 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred CCHHHHHHHHHHHHHCchh---HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH-------------------
Confidence 3468899999999999999 9999999999999888 7888888888877
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-ChHHHHHHHHHHHhcC
Q psy3014 366 EEEKKAYIDPVKAEEAKERGNELFKNG--KYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA-AFDLGLKDCETCLKLD 442 (570)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~ 442 (570)
.+|.+..+|...+.++...+ ++++++.++.++++.+|.+..+|..++.+....| .+++++++++++++.+
T Consensus 102 -------~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 102 -------VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp -------HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred -------hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence 89999999999999999999 7799999999999999999999999999999999 8999999999999999
Q ss_pred CCCHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 443 PKFLKGWIRKGKILQGM--------------QQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 443 p~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
|++..+|..+|.++..+ +.+++|++++.+|+.++|++..+|..++.++...++
T Consensus 175 p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 175 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 99999999999999874 568999999999999999999999999999998877
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.66 E-value=6.5e-15 Score=135.71 Aligned_cols=178 Identities=12% Similarity=0.113 Sum_probs=141.5
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHH
Q psy3014 279 TDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFK---LIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRT 355 (570)
Q Consensus 279 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 355 (570)
.....+...+..+...|++++|++.+.++++..+... .....++.+|.++...|++++|+.++++++...+...
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--- 149 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--- 149 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS---
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC---
Confidence 3445556677778888888888888888887655432 2235567788999999999999999999987433210
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCCH----HHHHHHHHHHHHhcCh
Q psy3014 356 LISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAI---NRNPDDP----KYYSNRAACYTKLAAF 428 (570)
Q Consensus 356 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~~~~ 428 (570)
.......++..+|.++...|++++|+.+|++++ +..|++. .+++++|.+|..+|++
T Consensus 150 -----------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 150 -----------------DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp -----------------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred -----------------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence 112236689999999999999999999999999 4566543 6899999999999999
Q ss_pred HHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCCHHHH-HHHHHHHHhhC
Q psy3014 429 DLGLKDCETCLKLDPK------FLKGWIRKGKILQGMQQQSKA-IDAYEKALELD 476 (570)
Q Consensus 429 ~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~ 476 (570)
++|+.++++++.+.++ ...+++++|.++..+|++++| ..+|++++.+.
T Consensus 213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 9999999999987543 267899999999999999999 88899998764
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.66 E-value=1.7e-15 Score=122.09 Aligned_cols=123 Identities=32% Similarity=0.472 Sum_probs=115.4
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
.+|..+..+..+|.+++..|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..+++++.++|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHHhcC
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDAS-----NAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~ 495 (570)
|.++..+|++++|+.+|+++++++|+ +..+...+..+..+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 88888888888766543
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.65 E-value=2.6e-16 Score=135.88 Aligned_cols=177 Identities=10% Similarity=0.060 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHH--HHHHH
Q psy3014 283 FQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRT--LISEM 360 (570)
Q Consensus 283 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~ 360 (570)
.....+.+....|+++++.+.+.......+.. ...+..+|..+...|++++|+..|.+++...+...... .....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQS---AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 82 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 33444555556666666666665554444444 66777777777777777777777777776332100000 00000
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
...-...++..+|.++...|++++|+.++++++..+|+++.+++.+|.++...|++++|+..|++++.
T Consensus 83 ------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 83 ------------KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 00001378999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHH-HHHHHHHh
Q psy3014 441 LDPKFLKGWIRKGKILQGMQQQSKAI-DAYEKALE 474 (570)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~ 474 (570)
++|++..++..++.++..+|+..++. ..|.+.+.
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998888877 44444443
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.65 E-value=4.3e-16 Score=129.95 Aligned_cols=120 Identities=32% Similarity=0.508 Sum_probs=110.7
Q ss_pred hhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHH
Q psy3014 6 SLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRK 85 (570)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (570)
..+.++..++.+|.+++..|+|++|+..|++++..+|+++.+++++|.++..+|++++|+..|++++.++|+++.+++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCHHHHHHHHHHhhccCCCcHHHH--HHHHHHHHH
Q psy3014 86 GSALSYLGRYKESISTYEEGLKLDPNNEQMK--EAIKDVRNQ 125 (570)
Q Consensus 86 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~ 125 (570)
|.++..+|++++|+..|+++++++|++..++ ..+..+...
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 127 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRK 127 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998744 444444433
No 147
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.64 E-value=1.3e-14 Score=133.74 Aligned_cols=178 Identities=15% Similarity=0.160 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh---h
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDIT------FQNNIAAVYFERKEYDQCIEQYIQKIENRADF---K 315 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~ 315 (570)
.....+...+..+...|++++|+..+++++...+..+. .+..+|.++...+++++|+..+++++...+.. .
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence 44555566788899999999999999999998887765 33458889998999999999999999864332 2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHH
Q psy3014 316 LIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYA 395 (570)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (570)
....++..+|.+|...|++++|+.+|++++... +......+....+++++|.++...|+++
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-------------------~~~~~~~~~~~~~~~nlg~~y~~~~~y~ 213 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQL-------------------EALHDNEEFDVKVRYNHAKALYLDSRYE 213 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------HHSSCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------------HhcccchhHHHHHHHHHHHHHHHHhHHH
Confidence 335689999999999999999999999998521 1100134456678888999999999999
Q ss_pred HHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcC-hHHHHHHHHHHHhc
Q psy3014 396 DAVKEYTEAINRNPDD------PKYYSNRAACYTKLAA-FDLGLKDCETCLKL 441 (570)
Q Consensus 396 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~-~~~A~~~~~~al~~ 441 (570)
+|+.++++++++.+.. +.+++++|.++..+|+ +++|+.+|++++.+
T Consensus 214 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999888775432 6788888888888884 58888888888765
No 148
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.64 E-value=1.7e-14 Score=129.07 Aligned_cols=169 Identities=9% Similarity=-0.059 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccC-----hhHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDP--TDITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD-----FKLIAKA 320 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-----~~~~~~~ 320 (570)
..+..+|.++...|++++|++.+.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.+.+|+ + ...+
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d--~~l~ 178 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDN--EMIL 178 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccch--HHHH
Confidence 3346789999999999999999999999997 88999999999999999999999999999998883 2 1333
Q ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHCCCHHH
Q psy3014 321 LQRIGNCYKKME--DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV--KAEEAKERGNELFKNGKYAD 396 (570)
Q Consensus 321 ~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 396 (570)
...-+++....| ++.+|...|+++.. ..|+ .+..+++ ++..+|++++
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~--------------------------~~p~~~~~~lLln---~~~~~g~~~e 229 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQ--------------------------TFPTWKTQLGLLN---LHLQQRNIAE 229 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHT--------------------------TSCSHHHHHHHHH---HHHHHTCHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHH--------------------------hCCCcccHHHHHH---HHHHcCCHHH
Confidence 333355566666 99999999999887 5554 2333333 8999999999
Q ss_pred HHHHHHHHHhc----------CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHH
Q psy3014 397 AVKEYTEAINR----------NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 397 A~~~~~~al~~----------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 449 (570)
|...++.+++. +|+++.++.+++.+...+|+ +|.++++++...+|+++.+.
T Consensus 230 Ae~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 230 AQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 99999988776 48899999999999999998 89999999999999998765
No 149
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.64 E-value=7.6e-16 Score=128.15 Aligned_cols=122 Identities=22% Similarity=0.293 Sum_probs=112.2
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc------------------CCCCcchhhchhHHHhcccCHHHHHHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKL------------------DGTNHILFSNRSAAFAKEGNYEKALEDA 68 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~ 68 (570)
....+..+..+|..++..|+|++|+..|++++.. +|.++.++.++|.|+..+|++++|+..+
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3457899999999999999999999999999999 7777789999999999999999999999
Q ss_pred hchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcH-HHHHHHHHHHHHhhh
Q psy3014 69 EKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNE-QMKEAIKDVRNQEMN 128 (570)
Q Consensus 69 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~ 128 (570)
++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++. .+...+..+......
T Consensus 87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 667777777766433
No 150
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.64 E-value=9.3e-17 Score=157.24 Aligned_cols=197 Identities=15% Similarity=0.133 Sum_probs=159.3
Q ss_pred CHHHHHHHHHH----HHccCCCCcchhhchhHHH------------hcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 26 NFIEAIEAYSE----AIKLDGTNHILFSNRSAAF------------AKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 26 ~~~~A~~~~~~----al~~~p~~~~~~~~la~~~------------~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
.++.|+..+++ ++.++|.. +|...|... ..++++++|+..+++++...|+...++..+|.++
T Consensus 201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~ 278 (457)
T 1kt0_A 201 GIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVY 278 (457)
T ss_dssp HHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHH
Confidence 56777777777 77788864 455555332 3677889999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHH
Q psy3014 90 SYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIK 169 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (570)
...|++++|+..|+++++++|.+.......
T Consensus 279 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~-------------------------------------------------- 308 (457)
T 1kt0_A 279 FKGGKYMQAVIQYGKIVSWLEMEYGLSEKE-------------------------------------------------- 308 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCCSCCHHH--------------------------------------------------
T ss_pred HhCCCHHHHHHHHHHHHHHhcccccCChHH--------------------------------------------------
Confidence 999999999999999999988763210000
Q ss_pred HHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHH
Q psy3014 170 EIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKK 249 (570)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (570)
.....+....+
T Consensus 309 ---------------------------------------------------------------------~~~~~~~~~~~ 319 (457)
T 1kt0_A 309 ---------------------------------------------------------------------SKASESFLLAA 319 (457)
T ss_dssp ---------------------------------------------------------------------HHHHHHHHHHH
T ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Confidence 00012245678
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYK 329 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 329 (570)
++++|.++...|++++|+.+|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++ ..++..++.++.
T Consensus 320 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~---~~a~~~l~~~~~ 396 (457)
T 1kt0_A 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN---KAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred HcCCHHHHHHH-HHHHhc
Q psy3014 330 KMEDWKNAKVY-FEKSMS 346 (570)
Q Consensus 330 ~~~~~~~A~~~-~~~~~~ 346 (570)
..++++++... +.+++.
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 99999888754 454443
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.64 E-value=1.1e-14 Score=113.80 Aligned_cols=115 Identities=31% Similarity=0.516 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKIL 456 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 456 (570)
.+..++.+|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy3014 457 QGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSI 491 (570)
Q Consensus 457 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 491 (570)
...|++++|+.+|+++++.+|+++.++..++.+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999988754
No 152
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.64 E-value=1.7e-15 Score=118.42 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG 458 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 458 (570)
..++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHH
Q psy3014 459 MQQQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 459 ~g~~~~A~~~~~~al~~~p~~~~ 481 (570)
.|++++|+..|+++++++|++..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999998754
No 153
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.64 E-value=1.6e-14 Score=114.05 Aligned_cols=121 Identities=30% Similarity=0.501 Sum_probs=113.9
Q ss_pred Chhh-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 374 DPVK-AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 374 ~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
+|.. +..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4544 788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
|.++...|++++|+.+|+++++.+|+++.++..++.++...|
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999987764
No 154
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.63 E-value=3.5e-14 Score=130.84 Aligned_cols=179 Identities=15% Similarity=0.168 Sum_probs=147.5
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh--
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDI------TFQNNIAAVYFERKEYDQCIEQYIQKIENRADF-- 314 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-- 314 (570)
.+.....+...+..+...|++++|+..+.++++..|... ..++.+|.++...|++++|+..+++++...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 456667778899999999999999999999999988764 345678899999999999999999999764322
Q ss_pred -hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh-hHHHHHHHHHHHHHCC
Q psy3014 315 -KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV-KAEEAKERGNELFKNG 392 (570)
Q Consensus 315 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 392 (570)
.....++..+|.+|...|++++|+.+|++++.... . ...++. ...++.++|.++...|
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~-------------------~-~~~~~~~~~~~~~nlg~~y~~~~ 210 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE-------------------A-LHDNEEFDVKVRYNHAKALYLDS 210 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------H-SCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------------------h-cCccccchHHHHHhHHHHHHHHh
Confidence 23467899999999999999999999999985211 0 001122 2368999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcChHHH-HHHHHHHHhc
Q psy3014 393 KYADAVKEYTEAINRNPD------DPKYYSNRAACYTKLAAFDLG-LKDCETCLKL 441 (570)
Q Consensus 393 ~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~ 441 (570)
++++|+.++++++...+. .+.+++++|.+|..+|++++| ..++++++.+
T Consensus 211 ~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 211 RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999999999999987532 277899999999999999999 7889999865
No 155
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.63 E-value=1.2e-14 Score=121.54 Aligned_cols=132 Identities=24% Similarity=0.315 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
+..+..+|.++...|++++|+..|++++. .+|.++.++..+|.++...|++++|
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--------------------------~~~~~~~~~~~~a~~~~~~~~~~~A 66 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIE--------------------------LNPSNAIYYGNRSLAYLRTECYGYA 66 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------------hCCCChHHHHHHHHHHHHcCCHHHH
Confidence 55566666666666666666666666666 5566666666666666666666666
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHhCCCHHHHHHHHHHHHhh
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKG--KILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~--~~~~~~g~~~~A~~~~~~al~~ 475 (570)
+.++++++..+|.++.+++.+|.++...|++++|+..|++++..+|++..++..++ ..+...|++++|+..+.++..+
T Consensus 67 ~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 67 LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 66666666666666666666666666666666666666666666666666553333 3355666666666666655443
No 156
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.63 E-value=6.7e-16 Score=120.80 Aligned_cols=105 Identities=13% Similarity=0.056 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
....++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++
T Consensus 16 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp GCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHHhhccCCCcHH
Q psy3014 90 SYLGRYKESISTYEEGLKLDPNNEQ 114 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~ 114 (570)
...|++++|+..|+++++.+|++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999998653
No 157
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.63 E-value=1.6e-14 Score=126.29 Aligned_cols=96 Identities=21% Similarity=0.233 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
..+..++.+|..+...|++++|+..|++++ +| ++.++..+|.++...|++++|+..+++++..+|++ ..++..+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l 77 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---AVAYFQR 77 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---hHHHHHH
Confidence 345556666666666666666666666663 22 55666666666666666666666666666666666 5666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHhc
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
|.++...|++++|+..|++++.
T Consensus 78 g~~~~~~~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 78 GMLYYQTEKYDLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 6666666666666666666665
No 158
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.62 E-value=4.7e-16 Score=152.24 Aligned_cols=127 Identities=28% Similarity=0.407 Sum_probs=118.1
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcChHHHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD---------------PKYYSNRAACYTKLAAFDLGLKDCET 437 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~ 437 (570)
..|..+..+..+|..++..|+|++|+..|+++++..|.+ ..+|+++|.+|..+|++++|+..|++
T Consensus 263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 678889999999999999999999999999999999998 68999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHH
Q psy3014 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 438 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~ 499 (570)
++.++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.++..+++..++
T Consensus 343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985543
No 159
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.62 E-value=1.9e-14 Score=132.57 Aligned_cols=173 Identities=12% Similarity=0.123 Sum_probs=140.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHH
Q psy3014 284 QNNIAAVYFERKEYDQCIEQYIQKIENRADFKLI---AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360 (570)
Q Consensus 284 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 360 (570)
+...+..+...|++++|+..++++++..+..+.. ...+..+|.++...+++++|+.+|++++.......
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~-------- 149 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-------- 149 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS--------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc--------
Confidence 3445778899999999999999999876655321 33455689999999999999999999998432210
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---C----CCCHHHHHHHHHHHHHhcChHHHHH
Q psy3014 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR---N----PDDPKYYSNRAACYTKLAAFDLGLK 433 (570)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~----p~~~~~~~~la~~~~~~~~~~~A~~ 433 (570)
.......++..+|.++...|++++|+.+|+++++. . +....+++++|.+|..+|++++|+.
T Consensus 150 ------------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~ 217 (293)
T 3u3w_A 150 ------------DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 11123557899999999999999999999999953 1 2235589999999999999999999
Q ss_pred HHHHHHhcCCCC------HHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhC
Q psy3014 434 DCETCLKLDPKF------LKGWIRKGKILQGMQ-QQSKAIDAYEKALELD 476 (570)
Q Consensus 434 ~~~~al~~~p~~------~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~ 476 (570)
++++++.+.+.. +.+++.+|.++..+| .+++|+.+|++|+.+.
T Consensus 218 ~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 999999875433 789999999999999 5799999999999764
No 160
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.60 E-value=7.7e-15 Score=124.11 Aligned_cols=128 Identities=14% Similarity=0.277 Sum_probs=110.7
Q ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH-HHHcCCH--H
Q psy3014 259 KKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC-YKKMEDW--K 335 (570)
Q Consensus 259 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 335 (570)
..|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|++ ..++..+|.+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN---AELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCcchH
Confidence 57889999999999999999999999999999999999999999999999999998 8889999998 7788888 8
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Q psy3014 336 NAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYY 415 (570)
Q Consensus 336 ~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 415 (570)
+|+..+++++. .+|.++.++..+|.++...|++++|+..|+++++.+|+++...
T Consensus 99 ~A~~~~~~al~--------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALA--------------------------LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999988888 7888888888889999999999999999999988888875443
No 161
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.60 E-value=4.2e-14 Score=118.14 Aligned_cols=133 Identities=18% Similarity=0.350 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQR 323 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 323 (570)
...+..+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|++ ..++..
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~ 86 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---IKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHH
Confidence 35677777778888888888888888888887777777777777777777777777777777777777766 666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHH--HHHHHHHCCCHHHHHHHH
Q psy3014 324 IGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKE--RGNELFKNGKYADAVKEY 401 (570)
Q Consensus 324 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~ 401 (570)
+|.++...|++++|+..|++++. .+|.+..++.. ++..+...|++++|+..+
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~--------------------------~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 140 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVK--------------------------VKPHDKDAKMKYQECNKIVKQKAFERAIAGD 140 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--------------------------HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 66666666666666666666666 45555444432 333355556666666655
Q ss_pred HHHH
Q psy3014 402 TEAI 405 (570)
Q Consensus 402 ~~al 405 (570)
.++.
T Consensus 141 ~~~~ 144 (166)
T 1a17_A 141 EHKR 144 (166)
T ss_dssp HHHH
T ss_pred cchH
Confidence 5543
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-14 Score=118.15 Aligned_cols=120 Identities=26% Similarity=0.395 Sum_probs=114.3
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD---PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 449 (570)
..|.....++.+|..+...|++++|+.+|+++++..|++ ..++..+|.++...|++++|+..+++++..+|+++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 457789999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIA 492 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 492 (570)
+.+|.++..+|++++|+.+|+++++++|++..++..++.+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999988887644
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.60 E-value=9.9e-15 Score=114.00 Aligned_cols=114 Identities=57% Similarity=0.926 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
.+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q psy3014 90 SYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 123 (570)
...|++++|+..|+++++.+|++..++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999988887764
No 164
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.59 E-value=2.2e-14 Score=114.77 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHH
Q psy3014 317 IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYAD 396 (570)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (570)
....+..+|.++...|++++|+..|++++. .+|.++.++..+|.++...|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--------------------------~~~~~~~~~~~la~~~~~~~~~~~ 68 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--------------------------RNPKDAKLYSNRAACYTKLLEFQL 68 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--------------------------TCTTCHHHHHHHHHHHTTTTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------cCCCcHHHHHHHHHHHHHhccHHH
Confidence 388999999999999999999999999999 888899999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Q psy3014 397 AVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQ 461 (570)
Q Consensus 397 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 461 (570)
|+.+++++++.+|.++.+++.+|.++...|++++|+..|++++..+|.+..++..++.++..+|+
T Consensus 69 A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 69 ALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999988764
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.6e-13 Score=134.50 Aligned_cols=302 Identities=11% Similarity=0.092 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHh
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALS 90 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 90 (570)
|...+..|..+...|+|++|++.|.++++..|+........+......+..++| +..+|.+|.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a-----------------l~~l~~~y~ 66 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETS-----------------ILELGQLYV 66 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHH-----------------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHH-----------------HHHHHHHHH
Confidence 345678899999999999999999999999999888777776666555554444 467899999
Q ss_pred hccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHH
Q psy3014 91 YLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKE 170 (570)
Q Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (570)
..|++++|+..+.+++...+......
T Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~~~~~------------------------------------------------------ 92 (434)
T 4b4t_Q 67 TMGAKDKLREFIPHSTEYMMQFAKSK------------------------------------------------------ 92 (434)
T ss_dssp HHTCHHHHHHHHHHTHHHHHTSCHHH------------------------------------------------------
T ss_pred HCCCHHHHHHHHHHHHHHHHHccchH------------------------------------------------------
Confidence 99999999999999987655432211
Q ss_pred HhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHH
Q psy3014 171 IQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKE 250 (570)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (570)
....+.
T Consensus 93 --------------------------------------------------------------------------~~~~~~ 98 (434)
T 4b4t_Q 93 --------------------------------------------------------------------------TVKVLK 98 (434)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 122334
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc---ccChhHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDP------TDITFQNNIAAVYFERKEYDQCIEQYIQKIEN---RADFKLIAKAL 321 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~~ 321 (570)
..+|.++...|++++|+.++++++...+ ....++..+|.++...|+|++|+..+++++.. ..+.+....++
T Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 178 (434)
T 4b4t_Q 99 TLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVH 178 (434)
T ss_dssp HHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 4567777788999999999999987632 33678899999999999999999999998854 22334558899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCCh--hhHHHHHHHHHHHHHCCCHHHHHH
Q psy3014 322 QRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDP--VKAEEAKERGNELFKNGKYADAVK 399 (570)
Q Consensus 322 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~ 399 (570)
..+|.+|...|++++|...+++++...+. + .+| .....+..+|.++...|+|.+|..
T Consensus 179 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~--------------------~-~~~~~~~~~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 179 LLESKVYHKLRNLAKSKASLTAARTAANS--------------------I-YCPTQTVAELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------S-CCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHhhc--------------------C-CCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999863211 0 122 235677888999999999999999
Q ss_pred HHHHHHhcCC-----CCHH-H--HHHHHHHHHHhcChHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHhC--CCHHHH
Q psy3014 400 EYTEAINRNP-----DDPK-Y--YSNRAACYTKLAAFDLGLKDCETCLKLDP----KFLKGWIRKGKILQGM--QQQSKA 465 (570)
Q Consensus 400 ~~~~al~~~p-----~~~~-~--~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~--g~~~~A 465 (570)
+|.+++...+ .... . ......++....................+ .....+..++..+... ..+..+
T Consensus 238 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~ 317 (434)
T 4b4t_Q 238 YFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTA 317 (434)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHhhhHHHHHHH
Confidence 9999987521 2211 1 11222233333333333332222221111 1233455555555432 355666
Q ss_pred HHHHHHHHhhCCC
Q psy3014 466 IDAYEKALELDAS 478 (570)
Q Consensus 466 ~~~~~~al~~~p~ 478 (570)
...+...+..+|.
T Consensus 318 ~~~~~~~~~~~~~ 330 (434)
T 4b4t_Q 318 LKQYEKELMGDEL 330 (434)
T ss_dssp HHHTHHHHTCSHH
T ss_pred HHHHHHHHcccHH
Confidence 6666666555443
No 166
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.59 E-value=2.2e-14 Score=114.35 Aligned_cols=119 Identities=23% Similarity=0.267 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
...+..+|.++...|++++|+..+++++. ..|.++.++..+|.++...|++++|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~~a~~~~~~~~~~~A 65 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIE--------------------------LNPANAVYFCNRAAAYSKLGNYAGA 65 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------------cCCCCHHHHHHHHHHHHHhhchHHH
Confidence 66777777777777777777777777777 5666777777777777777777777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCH
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQ 462 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 462 (570)
+.++.+++...|+++.+++.+|.++...|++++|+..+++++..+|+++.++..+|.++..+|++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 77777777777777777777788887888888888888888777777777777777777776654
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.59 E-value=3.8e-15 Score=120.04 Aligned_cols=119 Identities=20% Similarity=0.310 Sum_probs=110.7
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
.+.++..++.+|..++..|+|++|+..|++++..+|+++.++..+|.++..+|++++|+..+++++.++|+++.+++.+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCC-----cHHHHHHHHHHHHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPN-----NEQMKEAIKDVRNQ 125 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~ 125 (570)
.++...|++++|+..|+++++++|+ +..+...+..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988 66777666666544
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.58 E-value=4.1e-14 Score=112.57 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC---HHHHHHHH
Q psy3014 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDDP---KYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF---LKGWIRKG 453 (570)
Q Consensus 380 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~ 453 (570)
.++.+|.+++..|++++|+..|+++++..|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 467899999999999999999999999999988 899999999999999999999999999999999 88999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 454 KILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
.++..+|++++|+..|+++++.+|+++.+......+....+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988877776655443
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.58 E-value=5e-14 Score=112.27 Aligned_cols=120 Identities=23% Similarity=0.370 Sum_probs=112.5
Q ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC-------HH
Q psy3014 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF-------LK 447 (570)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~ 447 (570)
|..+..+..+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+.++++++...|++ +.
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999998877 88
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 448 GWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
+++.+|.++...|++++|+.+|+++++..| ++.++..++.+...+++
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 68999999998887764
No 170
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.56 E-value=1.6e-11 Score=120.65 Aligned_cols=372 Identities=11% Similarity=-0.028 Sum_probs=240.0
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccC-HHHHHHHHhchhcc---CCCChhHHh
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN-YEKALEDAEKTISL---KPDWPKGYS 83 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~ 83 (570)
...+...+..+...+-.|+++.+..+|++++...| +...|........+.+. .+.....|+.++.. +|.+...|.
T Consensus 11 i~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~ 89 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK 89 (493)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 45678888899888888999999999999999888 67788777766666553 35566777887764 777888888
Q ss_pred HHHHHHh----hccCHHHHHHHHHHhhccCCCcHHH-HHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCC
Q psy3014 84 RKGSALS----YLGRYKESISTYEEGLKLDPNNEQM-KEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF 158 (570)
Q Consensus 84 ~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (570)
.....+. ..|+.+.+...|++++..-+.+..- |......-.. .+..
T Consensus 90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~---------------------------- 140 (493)
T 2uy1_A 90 EYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKI---------------------------- 140 (493)
T ss_dssp HHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHH----------------------------
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccc----------------------------
Confidence 8887765 3577889999999999963333322 2211111111 0000
Q ss_pred CCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy3014 159 LSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDK 238 (570)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (570)
.....+.... +... ...............
T Consensus 141 ----~~~~~~~~~~--~~y~----~ar~~y~~~~~~~~~----------------------------------------- 169 (493)
T 2uy1_A 141 ----TGKKIVGDTL--PIFQ----SSFQRYQQIQPLIRG----------------------------------------- 169 (493)
T ss_dssp ----HHHHHHHHHH--HHHH----HHHHHHHHHHHHHHT-----------------------------------------
T ss_pred ----cHHHHHHHHh--HHHH----HHHHHHHHHHHHHhh-----------------------------------------
Confidence 0000000000 0000 000000000000000
Q ss_pred ccchhHHHHHHHHHHHHHHHHc--cC-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc
Q psy3014 239 NLTDEQRSAKKEKELGNEAYKK--KN-----FEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311 (570)
Q Consensus 239 ~~~~~~~~~~~~~~la~~~~~~--~~-----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 311 (570)
.....|......-... |- .+.....|++++...|..+.+|...+..+...|+.++|...|++++..
T Consensus 170 ------~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~- 242 (493)
T 2uy1_A 170 ------WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM- 242 (493)
T ss_dssp ------CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ------ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 0012344333332221 11 455778999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC
Q psy3014 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKN 391 (570)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (570)
|.+ ...+...+... ..+ +. ++++........ .+. ......+....+|...+....+.
T Consensus 243 P~~---~~l~~~y~~~~-e~~---~~---~~~l~~~~~~~~-------~~~------~~~~~~~~~~~lw~~y~~~~~r~ 299 (493)
T 2uy1_A 243 SDG---MFLSLYYGLVM-DEE---AV---YGDLKRKYSMGE-------AES------AEKVFSKELDLLRINHLNYVLKK 299 (493)
T ss_dssp CCS---SHHHHHHHHHT-TCT---HH---HHHHHHHTC-----------------------CHHHHHHHHHHHHHHHHHH
T ss_pred CCc---HHHHHHHHhhc-chh---HH---HHHHHHHHHhhc-------cch------hhhhcccccHHHHHHHHHHHHHc
Confidence 887 44444333321 111 11 222211100000 000 00001233456788888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q psy3014 392 GKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA-AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYE 470 (570)
Q Consensus 392 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (570)
+..+.|...|.++ ...+....+|...|.+....+ +.+.|...|+.+++..|+.+..+...+......|+.+.|...|+
T Consensus 300 ~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 300 RGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp HCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8999999999999 443346677877788777777 59999999999999999999888888888899999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 471 KALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 471 ~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
++ +....+|..+.......|+
T Consensus 379 r~----~k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 379 RL----EKTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HS----CCBHHHHHHHHHHHHHHSC
T ss_pred HH----HHHHHHHHHHHHHHHHCCC
Confidence 98 4678999999999888887
No 171
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.56 E-value=1.1e-14 Score=115.50 Aligned_cols=99 Identities=14% Similarity=0.194 Sum_probs=75.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCh----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q psy3014 391 NGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAF----------DLGLKDCETCLKLDPKFLKGWIRKGKILQGMQ 460 (570)
Q Consensus 391 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 460 (570)
.+.|++|+..++++++++|+++.+|+++|.++...+++ ++|+..|+++++++|++..+|+++|.+|..+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 35567777777777777777777777777777777654 47888888888888888888888888887764
Q ss_pred -----------CHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy3014 461 -----------QQSKAIDAYEKALELDASNAEAVEGYRQC 489 (570)
Q Consensus 461 -----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 489 (570)
++++|+.+|++|++++|++...+..+..+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 88999999999999999887776655543
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.56 E-value=2.7e-14 Score=110.33 Aligned_cols=107 Identities=16% Similarity=0.243 Sum_probs=103.1
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC--CHHHHHH
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK--FLKGWIR 451 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 451 (570)
+|.++.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..+++++..+|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57778889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhC-CCHHHHHHHHHHHHhhCCCcH
Q psy3014 452 KGKILQGM-QQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 452 l~~~~~~~-g~~~~A~~~~~~al~~~p~~~ 480 (570)
+|.++... |++++|++++++++...|+++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999999864
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.56 E-value=2.4e-14 Score=113.90 Aligned_cols=114 Identities=13% Similarity=0.120 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc---chhhchhHHHhcccCHHHHHHHHhchhccCCCC---hhHHhHH
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH---ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW---PKGYSRK 85 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 85 (570)
+.++.+|..++..|+|++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4578999999999999999999999999999998 799999999999999999999999999999999 8889999
Q ss_pred HHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 86 GSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 86 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
|.++..+|++++|+..|+++++.+|++..+......+...
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999887776666544
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.55 E-value=4.6e-15 Score=139.06 Aligned_cols=118 Identities=19% Similarity=0.341 Sum_probs=98.3
Q ss_pred hhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc-----------------chhhchhHHHhcccCHHHHHHH
Q psy3014 5 QSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH-----------------ILFSNRSAAFAKEGNYEKALED 67 (570)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~ 67 (570)
...+..+..++.+|..++..|+|++|+..|++++...|++. .+++++|.++..+|++++|+..
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44567889999999999999999999999999999999876 3899999999999999999999
Q ss_pred HhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q psy3014 68 AEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV 122 (570)
Q Consensus 68 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 122 (570)
|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.+
T Consensus 253 ~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 253 CNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988777655544
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3e-14 Score=116.40 Aligned_cols=118 Identities=29% Similarity=0.463 Sum_probs=112.2
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHh
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (570)
.+..+..++.+|..++..|+|++|+..|++++..+|++ ..++..+|.++...|++++|+..+++++..+|+++.+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 35678999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q psy3014 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRN 124 (570)
Q Consensus 84 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 124 (570)
.+|.++...|++++|+..|+++++++|++..++..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 99999999999999999999999999999999888877654
No 176
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.53 E-value=1.2e-13 Score=119.65 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=107.0
Q ss_pred HHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHh
Q psy3014 292 FERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371 (570)
Q Consensus 292 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 371 (570)
+..|++++|...++......+.. ..++..+|.++...|++++|+..+++++......
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------------------- 59 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATA---SGARFMLGYVYAFMDRFDEARASFQALQQQAQKS-------------------- 59 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--------------------
T ss_pred cccccHHHHHHHHHHhcCChHHH---HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--------------------
Confidence 34566666666443333311122 6666777777777777777777777766522110
Q ss_pred cCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCC----HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC
Q psy3014 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR---NPDD----PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444 (570)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 444 (570)
...+....++..+|.++...|++++|+.++++++.. .+++ ..++.++|.++...|++++|+..+++++.+.+.
T Consensus 60 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 60 GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 023445667777777777777777777777777776 3322 456778888888888888888888888765321
Q ss_pred --C----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 445 --F----LKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 445 --~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
+ ..++..+|.++...|++++|+.++++++++..
T Consensus 140 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 140 ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 1 23467889999999999999999999888754
No 177
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.53 E-value=4.9e-13 Score=105.42 Aligned_cols=116 Identities=28% Similarity=0.505 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
..++..+|.++...|++++|+..+++++. ..|.++.++..+|.++...|++++|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~~~~~~A 62 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE--------------------------LDPNNAEAWYNLGNAYYKQGDYDEA 62 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------HCcCcHHHHHHHHHHHHHhCCHHHH
Confidence 34455555555555555555555555555 4444555555555555555555555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM 459 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 459 (570)
+..+++++...|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 63 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 55555555555555555555666666666666666666666655565555555555555443
No 178
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.52 E-value=2.7e-13 Score=117.46 Aligned_cols=166 Identities=14% Similarity=0.154 Sum_probs=132.2
Q ss_pred HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccc---ChhHHHHHHHHHHHHHHHcCCH
Q psy3014 258 YKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA---DFKLIAKALQRIGNCYKKMEDW 334 (570)
Q Consensus 258 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~~~~l~~~~~~~~~~ 334 (570)
+..|++++|.+.++......+....++..+|.++...|++++|+..+++++.... +.+....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 4689999999966655554446788999999999999999999999999997422 3334488999999999999999
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CC
Q psy3014 335 KNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDP-VKAEEAKERGNELFKNGKYADAVKEYTEAINRNP--DD 411 (570)
Q Consensus 335 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~ 411 (570)
++|+.++++++..... ...++ ....++..+|.++...|++++|+.++++++...+ .+
T Consensus 83 ~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 142 (203)
T 3gw4_A 83 DAARRCFLEERELLAS--------------------LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142 (203)
T ss_dssp HHHHHHHHHHHHHHHH--------------------SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHH--------------------cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 9999999999873110 00133 4577899999999999999999999999997632 22
Q ss_pred ----HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Q psy3014 412 ----PKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443 (570)
Q Consensus 412 ----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 443 (570)
..++..+|.++...|++++|+..+++++.+..
T Consensus 143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 33578999999999999999999999997643
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.52 E-value=5.8e-13 Score=130.44 Aligned_cols=210 Identities=13% Similarity=0.075 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDI-----------------TFQNNIAAVYFERKEYDQCIEQYIQKIE 309 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~~l~ 309 (570)
|.+....|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++.+.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34566788999999999999999999999988652 4688999999999999999999999987
Q ss_pred cccCh---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q psy3014 310 NRADF---KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGN 386 (570)
Q Consensus 310 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 386 (570)
..+.. .....+...+|.++...|++++|+.++++++...+ .....+....++..+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~la~ 143 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAK--------------------REKRVFLKHSLSIKLAT 143 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHH--------------------HSSCCSSHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--------------------HhCccHHHHHHHHHHHH
Confidence 65543 22345667788999999999999999999886221 11134556788999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC---CC----HHHHHHHH
Q psy3014 387 ELFKNGKYADAVKEYTEAINR------NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP---KF----LKGWIRKG 453 (570)
Q Consensus 387 ~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~----~~~~~~l~ 453 (570)
++...|+|++|..++++++.. .+....++..+|.+|...|++++|...+++++...+ .. ...+..+|
T Consensus 144 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 223 (434)
T 4b4t_Q 144 LHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSG 223 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Confidence 999999999999999999875 233467899999999999999999999999987632 22 34567789
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 454 KILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
.++...|++.+|..+|.++++..
T Consensus 224 ~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 224 ILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHh
Confidence 99999999999999999998753
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.52 E-value=1.3e-13 Score=130.34 Aligned_cols=123 Identities=22% Similarity=0.386 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAIN----------------RNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
.+..+..+|..++..|++++|+..|+++++ .+|.++.++.++|.++..+|++++|+.+++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 456788999999999999999999999998 7778889999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHH
Q psy3014 441 LDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~ 499 (570)
++|+++.+++.+|.+|..+|++++|+.+|+++++++|++..++..++.++..+++..++
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998865443
No 181
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.51 E-value=1.1e-13 Score=109.76 Aligned_cols=112 Identities=21% Similarity=0.298 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy3014 355 TLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY----------ADAVKEYTEAINRNPDDPKYYSNRAACYTK 424 (570)
Q Consensus 355 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 424 (570)
.+++.+++|+..+++++..+|.++++|.++|.++...+++ ++|+..|+++++++|+++.+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3455666666666666669999999999999999998876 599999999999999999999999999998
Q ss_pred hc-----------ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy3014 425 LA-----------AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYR 487 (570)
Q Consensus 425 ~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 487 (570)
+| ++++|+.+|++|++++|++. .|.+++++.|..++.+..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~---------------------~y~~al~~~~ka~el~~~~~ 145 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT---------------------HYLKSLEMTAKAPQLHAEAY 145 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH---------------------HHHHHHHHHHTHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHHHHhCHhccCccc
Confidence 85 89999999999999999874 55666677777777666554
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.50 E-value=3.8e-14 Score=132.84 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
+..+..+|..+...|++++|+..|++++...+........+...++...+ ...++.++|.++...|++++|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l---------~~~~~~nla~~~~~~g~~~~A 249 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV---------KNPCHLNIAACLIKLKRYDEA 249 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHH---------HTHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHH---------HHHHHHHHHHHHHHcCCHHHH
Confidence 67788889999999999999999999988665543333333333333222 123778888888888888888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHhhC
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKIL-QGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~ 476 (570)
+.+|+++++.+|+++.+++++|.+|..+|++++|+..|++++.++|++..++..++.+. ...+..+++...|.+++...
T Consensus 250 ~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 250 IGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 88888888888888888888888888888888888888888888888888888888884 45567788888888888888
Q ss_pred CCcHH
Q psy3014 477 ASNAE 481 (570)
Q Consensus 477 p~~~~ 481 (570)
|+++.
T Consensus 330 p~~~~ 334 (338)
T 2if4_A 330 DEGGA 334 (338)
T ss_dssp -----
T ss_pred CCCCC
Confidence 87654
No 183
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.50 E-value=1.1e-13 Score=110.25 Aligned_cols=116 Identities=26% Similarity=0.397 Sum_probs=108.8
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCC-------hhH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW-------PKG 81 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 81 (570)
..+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|++ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999999999887 889
Q ss_pred HhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 82 YSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 82 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
++.+|.++...|++++|+..|+++++..| +......++.+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 57777777777655
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.50 E-value=4.5e-14 Score=109.93 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=79.6
Q ss_pred HCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHH
Q psy3014 390 KNGKYADAVKEYTEAINR---NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAI 466 (570)
Q Consensus 390 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (570)
..|++++|+.+|+++++. +|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357788888888888888 57777888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHH
Q psy3014 467 DAYEKALELDASNAEAVEGYRQCSI 491 (570)
Q Consensus 467 ~~~~~al~~~p~~~~~~~~l~~~~~ 491 (570)
..|+++++..|+++.+......+..
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~ 106 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILF 106 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 8888888888888877654444433
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.49 E-value=1.1e-14 Score=143.04 Aligned_cols=137 Identities=23% Similarity=0.331 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
+..+..+|.++...|++++|+..|+++++ .+|.++.++..+|.++...|++++|
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~--------------------------~~p~~~~~~~~lg~~~~~~g~~~~A 59 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIE--------------------------LNPSNAIYYGNRSLAYLRTECYGYA 59 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------------------------hCCccHHHHHHHHHHHHHhcCHHHH
Confidence 55677788889999999999999999998 8899999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHhCCCHHHHHHHHH-----
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKI--LQGMQQQSKAIDAYE----- 470 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~----- 470 (570)
+..++++++.+|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.+ +..+|++++|++.++
T Consensus 60 ~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~ 139 (477)
T 1wao_1 60 LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 139 (477)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCST
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 9999999999999999999999999999999999999999999999999999999998 888999999999999
Q ss_pred ------HHHhhCCCcH
Q psy3014 471 ------KALELDASNA 480 (570)
Q Consensus 471 ------~al~~~p~~~ 480 (570)
++++++|+..
T Consensus 140 ~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 140 VDSLDIESMTIEDEYS 155 (477)
T ss_dssp TTCCTTSSCCCCTTCC
T ss_pred Hhhhhhhhcccccccc
Confidence 8888887653
No 186
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.48 E-value=4e-14 Score=109.35 Aligned_cols=106 Identities=20% Similarity=0.232 Sum_probs=101.0
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCC--ChhHHhHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD--WPKGYSRK 85 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 85 (570)
|.++..++.+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|+ +..++..+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4456788999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHhhc-cCHHHHHHHHHHhhccCCCcH
Q psy3014 86 GSALSYL-GRYKESISTYEEGLKLDPNNE 113 (570)
Q Consensus 86 a~~~~~~-g~~~~A~~~~~~al~~~p~~~ 113 (570)
|.++... |++++|+..+++++...|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999 999999999999999999753
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.48 E-value=1.6e-13 Score=129.75 Aligned_cols=123 Identities=16% Similarity=0.330 Sum_probs=115.8
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHc----------------cCCCCcchhhchhHHHhcccCHHHHHHH
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIK----------------LDGTNHILFSNRSAAFAKEGNYEKALED 67 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~ 67 (570)
.......+..+..+|..++..|+|++|+..|+++++ .+|.+..++.++|.++..+|++++|+.+
T Consensus 216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 295 (370)
T 1ihg_A 216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS 295 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 445566788999999999999999999999999998 7888899999999999999999999999
Q ss_pred HhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q psy3014 68 AEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 126 (570)
Q Consensus 68 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 126 (570)
++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...
T Consensus 296 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 296 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888763
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.44 E-value=3.1e-14 Score=139.82 Aligned_cols=138 Identities=17% Similarity=0.340 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
..+..+..+|..+...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++.+|++ ..++..+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l 80 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---IKGYYRR 80 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHH
Confidence 5566677788999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH--HHHCCCHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNE--LFKNGKYADAVKEYT 402 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~ 402 (570)
|.+|..+|++++|+..|+++++ .+|.+..++..++.+ +...|++++|+..++
T Consensus 81 g~~~~~~g~~~eA~~~~~~al~--------------------------~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 81 AASNMALGKFRAALRDYETVVK--------------------------VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--------------------------HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999 788888888888888 889999999999999
Q ss_pred -----------HHHhcCCCC
Q psy3014 403 -----------EAINRNPDD 411 (570)
Q Consensus 403 -----------~al~~~p~~ 411 (570)
+++...|+.
T Consensus 135 ~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 135 HKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp -CCSTTTCCTTSSCCCCTTC
T ss_pred ccchhHhhhhhhhccccccc
Confidence 777776653
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.44 E-value=3.8e-13 Score=104.59 Aligned_cols=97 Identities=15% Similarity=0.087 Sum_probs=84.1
Q ss_pred cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcC---ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q psy3014 331 MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYI---DPVKAEEAKERGNELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 331 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 407 (570)
.|++++|+..|++++. . +|.++.++..+|.++...|++++|+.+|+++++.
T Consensus 3 ~g~~~~A~~~~~~al~--------------------------~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 56 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA--------------------------SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ 56 (117)
T ss_dssp ----CCCHHHHHHHHS--------------------------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH--------------------------cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566666666666666 7 6999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 408 NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKG 453 (570)
Q Consensus 408 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 453 (570)
+|+++.+++.+|.++...|++++|+..+++++...|+++.......
T Consensus 57 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 57 FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999987654333
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.42 E-value=1.5e-12 Score=108.08 Aligned_cols=141 Identities=14% Similarity=0.169 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
..++..+|.++...|++++|+.++++++...+.. ...+....++..+|.++...|++++|
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--------------------~~~~~~~~~~~~l~~~~~~~g~~~~A 68 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--------------------GDKAAERIAYSNLGNAYIFLGEFETA 68 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--------------------CCchHHHHHHHHHHHHHHHcCCHHHH
Confidence 5566666666666677777776666666521110 01112234566677777777777777
Q ss_pred HHHHHHHHhcCCCC------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHhCCCHHHH
Q psy3014 398 VKEYTEAINRNPDD------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDP------KFLKGWIRKGKILQGMQQQSKA 465 (570)
Q Consensus 398 ~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A 465 (570)
+.++++++...+.. ..++..+|.++...|++++|+..+++++...+ ....++..+|.++...|++++|
T Consensus 69 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 148 (164)
T 3ro3_A 69 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence 77777776654322 44667777777777777777777777776532 1245667778888888888888
Q ss_pred HHHHHHHHhhCCC
Q psy3014 466 IDAYEKALELDAS 478 (570)
Q Consensus 466 ~~~~~~al~~~p~ 478 (570)
+.++++++++...
T Consensus 149 ~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 149 MHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776543
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.37 E-value=2e-11 Score=101.17 Aligned_cols=144 Identities=17% Similarity=0.177 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccC---h
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD------ITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD---F 314 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~---~ 314 (570)
+..+.++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+..+++++...+. .
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 4567788888888888888888888888888775432 246777888888888888888888887765432 2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCH
Q psy3014 315 KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394 (570)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (570)
.....++..+|.++...|++++|+.++++++...+. ....+....++..+|.++...|++
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------~~~~~~~~~~~~~la~~~~~~g~~ 145 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE--------------------LKDRIGEGRACWSLGNAYTALGNH 145 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------------------ccchHhHHHHHHHHHHHHHHccCH
Confidence 233566777777777777777777777777652110 001123344555566666666666
Q ss_pred HHHHHHHHHHHhc
Q psy3014 395 ADAVKEYTEAINR 407 (570)
Q Consensus 395 ~~A~~~~~~al~~ 407 (570)
++|+.+++++++.
T Consensus 146 ~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 146 DQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666554
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.36 E-value=2.3e-13 Score=104.83 Aligned_cols=96 Identities=21% Similarity=0.300 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCC------hhHHh
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW------PKGYS 83 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 83 (570)
++..++.+|..++..|+|++|+..|++++..+|+++.+++++|.++..+|++++|+..|++++.++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHhhccCHHHHHHHHHHh
Q psy3014 84 RKGSALSYLGRYKESISTYEEG 105 (570)
Q Consensus 84 ~la~~~~~~g~~~~A~~~~~~a 105 (570)
.+|.++..+|+++.|+..+++.
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 9999999999888887766554
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.36 E-value=4.4e-12 Score=98.22 Aligned_cols=101 Identities=20% Similarity=0.313 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 395 ADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 395 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC--cHHHHHHHHHHHHHhcC
Q psy3014 475 LDAS--NAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 475 ~~p~--~~~~~~~l~~~~~~~~~ 495 (570)
++|+ +..+...+...+..+++
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhcc
Confidence 9884 45666666666666654
No 194
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.34 E-value=6.7e-10 Score=109.12 Aligned_cols=133 Identities=11% Similarity=-0.115 Sum_probs=97.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH-----------------------
Q psy3014 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRA----------------------- 419 (570)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la----------------------- 419 (570)
....|++++...|..+..|...+..+...|+.+.|...|++++.. |.+...+...+
T Consensus 198 v~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~ 276 (493)
T 2uy1_A 198 MHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAES 276 (493)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC------
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccch
Confidence 334555555577778888888888888888888888888888888 87654443333
Q ss_pred -----------------HHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCCCcHH
Q psy3014 420 -----------------ACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQ-QQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 420 -----------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~ 481 (570)
....+.+..+.|...|+++ ...+.....|...|.+....| +.+.|...|+.+++..|+++.
T Consensus 277 ~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~ 355 (493)
T 2uy1_A 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTL 355 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHH
T ss_pred hhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHH
Confidence 2333467788899999998 433334566666677666655 589999999999999999888
Q ss_pred HHHHHHHHHHHhcCCH
Q psy3014 482 AVEGYRQCSIAVSSNP 497 (570)
Q Consensus 482 ~~~~l~~~~~~~~~~~ 497 (570)
.+..++.....+|+..
T Consensus 356 ~~~~yid~e~~~~~~~ 371 (493)
T 2uy1_A 356 LKEEFFLFLLRIGDEE 371 (493)
T ss_dssp HHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHcCCHH
Confidence 8888888877777633
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.30 E-value=1.4e-12 Score=100.32 Aligned_cols=93 Identities=28% Similarity=0.418 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC------HHHHHH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF------LKGWIR 451 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~ 451 (570)
+..+..+|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|++++.++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45566667777777777777777777777777666667777777777777777777777777766666 666666
Q ss_pred HHHHHHhCCCHHHHHHHHH
Q psy3014 452 KGKILQGMQQQSKAIDAYE 470 (570)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~ 470 (570)
+|.++..+|+++.|+..++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 6666666666655554443
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.30 E-value=2.4e-11 Score=89.46 Aligned_cols=82 Identities=28% Similarity=0.427 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy3014 412 PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSI 491 (570)
Q Consensus 412 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 491 (570)
+.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+.+|+++++++|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred Hh
Q psy3014 492 AV 493 (570)
Q Consensus 492 ~~ 493 (570)
.+
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.26 E-value=6.2e-11 Score=87.17 Aligned_cols=87 Identities=24% Similarity=0.388 Sum_probs=81.9
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKG 453 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 453 (570)
.|..+..+..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q psy3014 454 KILQGMQ 460 (570)
Q Consensus 454 ~~~~~~g 460 (570)
.++..+|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9987654
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.25 E-value=5.5e-11 Score=89.09 Aligned_cols=89 Identities=18% Similarity=0.322 Sum_probs=72.3
Q ss_pred cCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC--cHHHHH
Q psy3014 407 RNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS--NAEAVE 484 (570)
Q Consensus 407 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~ 484 (570)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|++++++.|+ +.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 368888999999999999999999999999999999999999999999999999999999999999988764 455556
Q ss_pred HHHHHHHHhcC
Q psy3014 485 GYRQCSIAVSS 495 (570)
Q Consensus 485 ~l~~~~~~~~~ 495 (570)
.+..++...+.
T Consensus 82 ~l~~~l~~~~~ 92 (100)
T 3ma5_A 82 ELQDAKLKAEG 92 (100)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHccc
Confidence 66666665554
No 199
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.19 E-value=3.2e-11 Score=90.43 Aligned_cols=91 Identities=18% Similarity=0.280 Sum_probs=73.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q psy3014 382 KERGNELFKNGKYADAVKEYTEAINRNPDDPK-YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQ 460 (570)
Q Consensus 382 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 460 (570)
+..|..+...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|++++.++|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677888888888888888888888888888 88888888888888888888888888888888777644 5
Q ss_pred CHHHHHHHHHHHHhhCCCcH
Q psy3014 461 QQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 461 ~~~~A~~~~~~al~~~p~~~ 480 (570)
.+.+|+..|+++...+|+++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 67778888888887777654
No 200
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.19 E-value=1.1e-11 Score=93.03 Aligned_cols=92 Identities=17% Similarity=0.263 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc-hhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhc
Q psy3014 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHI-LFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYL 92 (570)
Q Consensus 14 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 92 (570)
.+.+|..++..|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 367899999999999999999999999999999 99999999999999999999999999999999888744
Q ss_pred cCHHHHHHHHHHhhccCCCcH
Q psy3014 93 GRYKESISTYEEGLKLDPNNE 113 (570)
Q Consensus 93 g~~~~A~~~~~~al~~~p~~~ 113 (570)
+.+.+++..|+++...+|++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 677888999999888887654
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.18 E-value=1.8e-10 Score=89.05 Aligned_cols=95 Identities=8% Similarity=-0.052 Sum_probs=80.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy3014 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 442 (570)
++..+++++..+|.++.+++.+|.++...|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..|++++.+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34455555559999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC--HHHHHHHHHHHH
Q psy3014 443 PKF--LKGWIRKGKILQ 457 (570)
Q Consensus 443 p~~--~~~~~~l~~~~~ 457 (570)
|.. ......+...+.
T Consensus 84 ~~~~~~~~~~~l~~~l~ 100 (115)
T 2kat_A 84 QSRGDQQVVKELQVFLR 100 (115)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHH
Confidence 753 344444444443
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.12 E-value=2.2e-09 Score=85.53 Aligned_cols=117 Identities=12% Similarity=0.043 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcChHHHHHHHH
Q psy3014 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK----LAAFDLGLKDCE 436 (570)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~ 436 (570)
++|+..++++.......+. +|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|+
T Consensus 12 ~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 85 (138)
T 1klx_A 12 KKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYS 85 (138)
T ss_dssp HHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 3333444443335533333 999999999999999999999987 689999999999999 899999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy3014 437 TCLKLDPKFLKGWIRKGKILQG----MQQQSKAIDAYEKALELDASNAEAVEGYR 487 (570)
Q Consensus 437 ~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 487 (570)
++.+. .++.+.+++|.+|.. .+++++|+.+|+++.+. .++.+...|+
T Consensus 86 ~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 86 KACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 99986 679999999999999 99999999999999987 4566665554
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.08 E-value=3.9e-10 Score=84.37 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=67.4
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF 445 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 445 (570)
.+|+++.+++.+|.++...|++++|+.+|+++++.+|+++.+|+.+|.+|...|++++|+..|++++.+.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999987643
No 204
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.05 E-value=2.7e-08 Score=86.58 Aligned_cols=107 Identities=13% Similarity=0.080 Sum_probs=93.1
Q ss_pred CChhhHHHHHHHHHHHHH-----CCC------HHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHh-----cChHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFK-----NGK------YADAVKEYTEAINRNPD--DPKYYSNRAACYTKL-----AAFDLGLKD 434 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~-----~~~------~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----~~~~~A~~~ 434 (570)
.+|++++.++-.|.+... .|. ...|...++++++++|+ +..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 678888887777666532 233 46899999999999999 677999999999995 999999999
Q ss_pred HHHHHhcCCCC-HHHHHHHHHHHHh-CCCHHHHHHHHHHHHhhCCCc
Q psy3014 435 CETCLKLDPKF-LKGWIRKGKILQG-MQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 435 ~~~al~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~ 479 (570)
|+++++++|+. ..+++.+|..+.. .|++++|..++++++..+|..
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999975 9999999999988 599999999999999988773
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.05 E-value=5.2e-09 Score=101.77 Aligned_cols=135 Identities=10% Similarity=0.049 Sum_probs=109.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhhc-----ccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHH
Q psy3014 287 IAAVYFERKEYDQCIEQYIQKIEN-----RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEME 361 (570)
Q Consensus 287 la~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 361 (570)
.+..+..+|+|++|+..++++++. .|+++....++.++|.+|..+|+|++|+.++++++...
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~------------- 381 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGY------------- 381 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-------------
Confidence 344567889999999999999854 57777889999999999999999999999999998731
Q ss_pred HHHHHHHHHh-cCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHhcChHHHH
Q psy3014 362 KKIKEEEKKA-YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR-----NPDDP---KYYSNRAACYTKLAAFDLGL 432 (570)
Q Consensus 362 ~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~~~~~~A~ 432 (570)
++.+ ..+|.....+.++|.+|..+|++++|+.+|++++.+ .|++| .....++.++..++.+++|.
T Consensus 382 ------~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 382 ------MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp ------HHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 156777888999999999999999999999999875 45554 45677888888888888888
Q ss_pred HHHHHHHh
Q psy3014 433 KDCETCLK 440 (570)
Q Consensus 433 ~~~~~al~ 440 (570)
..|.++.+
T Consensus 456 ~~~~~~~~ 463 (490)
T 3n71_A 456 FMYHKMRE 463 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.02 E-value=6.7e-09 Score=101.01 Aligned_cols=142 Identities=11% Similarity=0.052 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHhhc-----ccC
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEF-----DPTDI---TFQNNIAAVYFERKEYDQCIEQYIQKIEN-----RAD 313 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~~~ 313 (570)
.......+..+..+|+|++|+..+++++++ .|+++ ..+.++|.+|..+|+|++|+.++++++.+ .|+
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 444555666788999999999999999986 45554 57789999999999999999999999954 577
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHCC
Q psy3014 314 FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY-IDPVKAEEAKERGNELFKNG 392 (570)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 392 (570)
++..+..+.++|.+|..+|++++|+.+|++++... ++.+- .+|...+....++.++..++
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~-------------------~~~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL-------------------LVTHGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------HHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------HHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999998732 11111 45667777889999999999
Q ss_pred CHHHHHHHHHHHHhc
Q psy3014 393 KYADAVKEYTEAINR 407 (570)
Q Consensus 393 ~~~~A~~~~~~al~~ 407 (570)
.+++|...|.++.+.
T Consensus 450 ~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 450 MFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988653
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.02 E-value=7.4e-09 Score=82.47 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcChHHHHHHHHHHHhc
Q psy3014 377 KAEEAKERGNELFK----NGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK----LAAFDLGLKDCETCLKL 441 (570)
Q Consensus 377 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~ 441 (570)
++.+.+.+|.+|.. .+++++|+.+|+++.+. .++.+.+++|.+|.. .+++++|+.+|+++.+.
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 34455555555555 45555555555555544 345555555555555 55555555555555554
No 208
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.99 E-value=5.1e-09 Score=82.05 Aligned_cols=101 Identities=14% Similarity=0.019 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc---ChHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHhCCCHHHHHHH
Q psy3014 394 YADAVKEYTEAINRNPDDPKYYSNRAACYTKLA---AFDLGLKDCETCLKLD-P-KFLKGWIRKGKILQGMQQQSKAIDA 468 (570)
Q Consensus 394 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (570)
...+.+.|.+.+..+|.+.++.+++|+++.+.+ +.++++..++.+++.+ | +..+++|.+|..++++|+|++|+.+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456777888888888889999999999999988 6679999999999988 7 5688999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 469 YEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 469 ~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
++++++++|+|..+......+..++.
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLIDKAMK 119 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999888777665553
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.97 E-value=1.9e-08 Score=91.72 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=90.9
Q ss_pred HHHhcCCCCHHHH--HHHHHHHHHhcC---HHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 272 KAVEFDPTDITFQ--NNIAAVYFERKE---YDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 272 ~al~~~p~~~~~~--~~la~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
++....|.++.+| +..|..+...++ ..+|+.+|+++++++|++ +.++..++.+|... ....
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~---a~A~A~la~a~~~~-----------~~~~ 250 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF---TYARAEKALVDIVR-----------HSQH 250 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHH-----------HHHS
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH-----------hccC
Confidence 4445577776655 556666666544 588999999999999999 88888888887611 0000
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy3014 347 EHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA 426 (570)
Q Consensus 347 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 426 (570)
|........ ...|... ..++...|.++.++..++..+...|
T Consensus 251 ----------------------------~~~~~~~~~----------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~g 291 (372)
T 3ly7_A 251 ----------------------------PLDEKQLAA----------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKG 291 (372)
T ss_dssp ----------------------------CCCHHHHHH----------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHT
T ss_pred ----------------------------CCchhhHHH----------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCC
Confidence 000000000 0112221 1223445666666666666666666
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 427 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|+.++|..+
T Consensus 292 d~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 292 KTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 666666666666666653 44555666666666666666666666666666554
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.96 E-value=1.4e-08 Score=73.85 Aligned_cols=72 Identities=18% Similarity=0.034 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHHHHHhcC---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 408 NPDDPKYYSNRAACYTKLAA---FDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 408 ~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
+|+++.++..+|.+++..++ .++|...+++++..+|+++.+++.+|..++..|+|++|+.+|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57888888888888876666 6888888888888888888888888888888888888888888888888874
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.95 E-value=2.4e-08 Score=91.10 Aligned_cols=151 Identities=11% Similarity=-0.038 Sum_probs=101.3
Q ss_pred hcccChhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHH
Q psy3014 309 ENRADFKLIAKALQRIGNCYKKMED---WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERG 385 (570)
Q Consensus 309 ~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 385 (570)
...|.+.. +.-++..|..+...+. ..+|+.+|+++++ .+|+.+.++-.++
T Consensus 188 ~~~p~~~~-Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--------------------------lDP~~a~A~A~la 240 (372)
T 3ly7_A 188 KILPHRGA-LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--------------------------SSPEFTYARAEKA 240 (372)
T ss_dssp HHSCSSGG-GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHH
T ss_pred ccCCCCHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHH
Confidence 33444422 3334445555555433 4677777888777 8999999999888
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHH
Q psy3014 386 NELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKA 465 (570)
Q Consensus 386 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 465 (570)
.++.. . ....|........ ...|... ..++..+|..+.++..+|..+...|++++|
T Consensus 241 ~a~~~-----------~--~~~~~~~~~~~~~----------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A 296 (372)
T 3ly7_A 241 LVDIV-----------R--HSQHPLDEKQLAA----------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDES 296 (372)
T ss_dssp HHHHH-----------H--HHHSCCCHHHHHH----------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHH-----------H--hccCCCchhhHHH----------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHH
Confidence 88871 1 1111222221111 1233331 234577899999999999999989999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHHH---HHHHcCCchHH
Q psy3014 466 IDAYEKALELDASNAEAVEGYRQCSIAVSSNPEEV---RKRAMGDPEVQ 511 (570)
Q Consensus 466 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~~---~~~~~~~p~~~ 511 (570)
+..+++|+.++|+ ..++..++.++...|+..++. .+.+..+|...
T Consensus 297 ~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 297 YQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 9999999999985 678899999999999965433 34445566554
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.89 E-value=1.2e-07 Score=82.60 Aligned_cols=79 Identities=13% Similarity=0.020 Sum_probs=69.6
Q ss_pred HHHHhcCChh--hHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-hcChHHHHHHHHH
Q psy3014 367 EEKKAYIDPV--KAEEAKERGNELFKN-----GKYADAVKEYTEAINRNPDD-PKYYSNRAACYTK-LAAFDLGLKDCET 437 (570)
Q Consensus 367 ~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~~~~~~A~~~~~~ 437 (570)
++++++++|. +..+|..+|.+|... |+.++|..+|+++++++|+. ..+++..|..+.. .|++++|..++++
T Consensus 186 lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~k 265 (301)
T 3u64_A 186 LERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDR 265 (301)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3333338888 677999999999995 99999999999999999975 9999999999988 4999999999999
Q ss_pred HHhcCCCC
Q psy3014 438 CLKLDPKF 445 (570)
Q Consensus 438 al~~~p~~ 445 (570)
++..+|..
T Consensus 266 AL~a~p~~ 273 (301)
T 3u64_A 266 ALAIDPES 273 (301)
T ss_dssp HHHCCGGG
T ss_pred HHcCCCCC
Confidence 99988773
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.79 E-value=5.4e-08 Score=70.64 Aligned_cols=73 Identities=15% Similarity=0.067 Sum_probs=68.2
Q ss_pred ChhhHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH
Q psy3014 374 DPVKAEEAKERGNELFKNGK---YADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL 446 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 446 (570)
+|+++..+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+..|+++++.+|..+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 57889999999999986666 79999999999999999999999999999999999999999999999999843
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.78 E-value=5.7e-08 Score=76.11 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHhcChHHHHHH
Q psy3014 360 MEKKIKEEEKKAYIDPVKAEEAKERGNELFKNG---KYADAVKEYTEAINRN-P-DDPKYYSNRAACYTKLAAFDLGLKD 434 (570)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~ 434 (570)
+..+...|.+....++.+.++.+.+|+++.+.+ +.++++..++.+++.+ | ++.++++++|..++++|+|++|..+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 344445555555578889999999999999988 6779999999999998 7 5689999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHH
Q psy3014 435 CETCLKLDPKFLKGWIRKGKI 455 (570)
Q Consensus 435 ~~~al~~~p~~~~~~~~l~~~ 455 (570)
++++++++|++..+....-.+
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHH
Confidence 999999999998887654443
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.77 E-value=1e-07 Score=71.35 Aligned_cols=78 Identities=14% Similarity=-0.062 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy3014 412 PKYYSNRAACYTKLAAFDLGLKDCETCLKLD-------PKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484 (570)
Q Consensus 412 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 484 (570)
+.-.+.+|..++..|+|..|+.+|++|+... +..+.++..+|.++.++|+++.|+.+++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3445556666666666666666666665542 234566777777777777777777777777777777777766
Q ss_pred HHHHH
Q psy3014 485 GYRQC 489 (570)
Q Consensus 485 ~l~~~ 489 (570)
++..+
T Consensus 85 n~~~~ 89 (104)
T 2v5f_A 85 NLKYF 89 (104)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 66633
No 216
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=98.72 E-value=2e-08 Score=66.44 Aligned_cols=65 Identities=49% Similarity=0.819 Sum_probs=60.5
Q ss_pred cCCHHHHHHHHcCCchHHHhhcCHHHHHHHHHhhcCHHHHHHhhcCHHHHHHHHHHHhcCchhhh
Q psy3014 494 SSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIASKIQKLVNSGLIVLA 558 (570)
Q Consensus 494 ~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (570)
|..+++....+..||++..++.||.+..+++.+.++|.++..|++||+|+..+++++..|+++++
T Consensus 6 ~e~~ee~~~~~m~dPEi~~im~DP~~~~~lq~~~~NP~~~~k~~~nP~v~~~i~kl~~aGii~~~ 70 (71)
T 2llw_A 6 NETPEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQTLIAAGIIRTG 70 (71)
T ss_dssp CSCHHHHHHHHHHSHHHHHHHTCTHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHHHHHTTSSCCC
T ss_pred CCCcHHHHHHHhcCHHHHHHhCCHHHHHHHHHHHHCHHHHHHHHhCHHHHHHHHHHHHcchhhcC
Confidence 34677888889999999999999999999999999999999999999999999999999998864
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.68 E-value=2.1e-07 Score=69.71 Aligned_cols=77 Identities=17% Similarity=0.137 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHH
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRN-------PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 449 (570)
++.-.+.+|..++..|+|..|+.+|++|++.. +..+.++..+|.++.++|+++.|+..+++++.++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34567899999999999999999999999863 34578999999999999999999999999999999999988
Q ss_pred HHHH
Q psy3014 450 IRKG 453 (570)
Q Consensus 450 ~~l~ 453 (570)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 8776
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.64 E-value=1.5e-07 Score=90.06 Aligned_cols=97 Identities=10% Similarity=0.153 Sum_probs=82.0
Q ss_pred HHCCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHhcChHHHHHHHHHHHhc-----CCC---CHHHHHHH
Q psy3014 389 FKNGKYADAVKEYTEAINR-----NPDDP---KYYSNRAACYTKLAAFDLGLKDCETCLKL-----DPK---FLKGWIRK 452 (570)
Q Consensus 389 ~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~l 452 (570)
...|+|++|+..+++++++ .|+++ .++.++|.+|..+|+|++|+.++++++.+ .|+ -...+.++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3568999999999999975 45554 57889999999999999999999999975 344 45678899
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhh-----CCCcHHHHHH
Q psy3014 453 GKILQGMQQQSKAIDAYEKALEL-----DASNAEAVEG 485 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~ 485 (570)
|.+|..+|++++|+..|++|+++ .|+++.+...
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 99999999999999999999986 4777766543
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.64 E-value=6.4e-08 Score=92.51 Aligned_cols=107 Identities=11% Similarity=0.076 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCC---cchhhchhHHHhcccCHHHHHHHHhchhcc--------
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKL-----DGTN---HILFSNRSAAFAKEGNYEKALEDAEKTISL-------- 74 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 74 (570)
+...+..+......|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+
T Consensus 298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 377 (433)
T 3qww_A 298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY 377 (433)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 334445555556678999999999999985 4555 456889999999999999999999999965
Q ss_pred CCCChhHHhHHHHHHhhccCHHHHHHHHHHhhcc-----CCCcHHHHH
Q psy3014 75 KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKL-----DPNNEQMKE 117 (570)
Q Consensus 75 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 117 (570)
+|+-...+.++|.+|..+|++++|+..|++++++ .|+++.+..
T Consensus 378 Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 378 SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 3445567999999999999999999999999975 577776554
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.58 E-value=2.3e-07 Score=88.99 Aligned_cols=109 Identities=11% Similarity=0.062 Sum_probs=87.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHhcChHHHHHHHHHHHhc-----CCCC---HHH
Q psy3014 385 GNELFKNGKYADAVKEYTEAINR-----NPDD---PKYYSNRAACYTKLAAFDLGLKDCETCLKL-----DPKF---LKG 448 (570)
Q Consensus 385 ~~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~ 448 (570)
..-+..+|+|++|+..++++++. .|++ ..++.++|.+|..+|+|++|+.++++++.+ .|++ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33456789999999999999975 3445 457899999999999999999999999975 3444 567
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhh-----CCCcHHHH---HHHHHHHHHh
Q psy3014 449 WIRKGKILQGMQQQSKAIDAYEKALEL-----DASNAEAV---EGYRQCSIAV 493 (570)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~---~~l~~~~~~~ 493 (570)
++++|.+|..+|++++|+.+|++|+++ .|+++.+. .+|+.+...+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999985 47776655 4455555443
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.55 E-value=1.7e-06 Score=82.96 Aligned_cols=118 Identities=13% Similarity=0.097 Sum_probs=94.3
Q ss_pred HHHHHhcCHHHHHHHHHHHhhc-----ccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Q psy3014 289 AVYFERKEYDQCIEQYIQKIEN-----RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKK 363 (570)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a 363 (570)
.-+...|+|++|+..++++++. .|+++....++.++|.+|..+|+|++|+.++++++...
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~--------------- 359 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY--------------- 359 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH---------------
Confidence 3456789999999999999954 57777889999999999999999999999999998732
Q ss_pred HHHHHHHh-cCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCHH---HHHHHHHHHHHh
Q psy3014 364 IKEEEKKA-YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR-----NPDDPK---YYSNRAACYTKL 425 (570)
Q Consensus 364 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~ 425 (570)
++.. ..+|.....++++|.+|..+|++++|+.+|++++++ .|++|. ++.+++.+...+
T Consensus 360 ----~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 360 ----RIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp ----HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred ----HHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 1111 167788888999999999999999999999999875 556654 445566655443
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.54 E-value=1.3e-06 Score=65.78 Aligned_cols=100 Identities=15% Similarity=0.011 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHhCCCHHHHHHH
Q psy3014 394 YADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDL---GLKDCETCLKLD-P-KFLKGWIRKGKILQGMQQQSKAIDA 468 (570)
Q Consensus 394 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (570)
...+...|.+....++.+..+.+++|+++.+..+... ++..++..+..+ | ..-+.++.+|..++++|+|.+|..+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4556677777777777888999999999998877665 999999988876 5 4667889999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 469 YEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 469 ~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
++.+|+..|+|..+......+..++
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELERLIDKAM 121 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887766665544
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.27 E-value=5.5e-06 Score=62.30 Aligned_cols=99 Identities=9% Similarity=0.062 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHH---HHHHHhchhccC-C-CChhHHhHHHHHHhhccCHHHHH
Q psy3014 25 NNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEK---ALEDAEKTISLK-P-DWPKGYSRKGSALSYLGRYKESI 99 (570)
Q Consensus 25 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~ 99 (570)
.....+...|.+.+..++.+..+.+++|.++.+..+... ++..++..+..+ | ..-+.++.+|..++++|+|++|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 345566777888888788889999999999999887766 999999999987 6 56789999999999999999999
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHH
Q psy3014 100 STYEEGLKLDPNNEQMKEAIKDVR 123 (570)
Q Consensus 100 ~~~~~al~~~p~~~~~~~~l~~~~ 123 (570)
.+++.+++..|+|..+......+.
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999998876555444
No 224
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.25 E-value=0.00028 Score=69.26 Aligned_cols=167 Identities=13% Similarity=0.010 Sum_probs=128.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhc---------CHHHHHHHHHHHhhc--ccChhHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFD-PTDITFQNNIAAVYFERK---------EYDQCIEQYIQKIEN--RADFKLI 317 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~---------~~~~A~~~~~~~l~~--~~~~~~~ 317 (570)
+...-..+.+.|+.++|+.+|+++.+.. +-+...|..+-.++...+ ..++|.+.|++.... .|+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd---- 104 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN---- 104 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC----
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC----
Confidence 4445577789999999999999998753 224555665555555433 478899999987754 455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
..++..+...|.+.|++++|...|++..... ..| +..+|..+-..+.+.|+.++|
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g------------------------~~P-d~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFG------------------------IQP-RLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------------------------CCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------------------CCC-ccceehHHHHHHHHCCCHHHH
Confidence 6788889999999999999999999887632 233 456778888889999999999
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCCC
Q psy3014 398 VKEYTEAINRN-PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL--DPKF 445 (570)
Q Consensus 398 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~ 445 (570)
...|++..+.. ..+...|..+-..+.+.|+.++|.+.+++.-+. .|+.
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~ 210 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK 210 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH
Confidence 99999988752 236778899999999999999999999987654 4543
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.22 E-value=4.4e-05 Score=58.56 Aligned_cols=112 Identities=19% Similarity=0.061 Sum_probs=96.4
Q ss_pred CChhhHHHHHHHHHHHHHCCCH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhcChHHHHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKY------ADAVKEYTEAINRNPDD--------PKYYSNRAACYTKLAAFDLGLKDCETC 438 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a 438 (570)
+.|.+++.|........+.|+. ++-++.|++|+..-|.. ...|...|.. ...++.++|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 6899999999999999988999 88999999999877642 3466666754 6779999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy3014 439 LKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485 (570)
Q Consensus 439 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 485 (570)
+.++...+..|...|..-.++|+...|.+.+.+++.+.|...+.+..
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 99988899999999999999999999999999999999987766543
No 226
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.22 E-value=0.00016 Score=70.92 Aligned_cols=175 Identities=7% Similarity=0.025 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhc--ccChhHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHhcccCCH
Q psy3014 283 FQNNIAAVYFERKEYDQCIEQYIQKIEN--RADFKLIAKALQRIGNCYKKME---------DWKNAKVYFEKSMSEHRTP 351 (570)
Q Consensus 283 ~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~~~~l~~~~~~~~---------~~~~A~~~~~~~~~~~~~~ 351 (570)
.+...-..+.+.|+.++|++.|++..+. .|+ ..+|..+-.++...+ ..+.|...|++.....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd----~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G--- 100 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS----QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK--- 100 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC----HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC---
Confidence 3455567788999999999999998854 455 456666666665443 3677777777766532
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcChHH
Q psy3014 352 EIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN-PDDPKYYSNRAACYTKLAAFDL 430 (570)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~ 430 (570)
..| +..+|..+...+.+.|++++|...|++..+.. ..+...|..+-..|.+.|+.++
T Consensus 101 ---------------------~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~ 158 (501)
T 4g26_A 101 ---------------------VVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADK 158 (501)
T ss_dssp ---------------------CCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHH
Confidence 233 46678889999999999999999999988752 3368889999999999999999
Q ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHH
Q psy3014 431 GLKDCETCLKL--DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALEL--DASNAEAVEGYRQ 488 (570)
Q Consensus 431 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 488 (570)
|.+.|++..+. .| +...|..+-..+.+.|+.++|.+.+++..+. .|+... +..+..
T Consensus 159 A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T-~~~l~~ 218 (501)
T 4g26_A 159 AYEVDAHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST-FDMIEE 218 (501)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH-HHHHHH
T ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH-HHHHHH
Confidence 99999998875 34 4667888999999999999999999998764 565443 333433
No 227
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=98.17 E-value=4.1e-06 Score=54.40 Aligned_cols=54 Identities=20% Similarity=0.407 Sum_probs=51.0
Q ss_pred HHHHHHHcCCchHHHhhcCHHHHHHHHHhhcCHHHHHHhhcCHHHHHHHHHHHh
Q psy3014 498 EEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIASKIQKLVN 551 (570)
Q Consensus 498 e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (570)
++.+.++..||++..++.||.+...++.+.++|.++..+++||++...++++++
T Consensus 2 ~e~~~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP~v~~~~~~L~~ 55 (62)
T 2lnm_A 2 EEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQ 55 (62)
T ss_dssp HHHHHHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhChHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999875
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.98 E-value=0.00035 Score=53.33 Aligned_cols=85 Identities=13% Similarity=-0.084 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHHhcCh---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy3014 409 PDDPKYYSNRAACYTKLAAF---DLGLKDCETCLKLDPK-FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484 (570)
Q Consensus 409 p~~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 484 (570)
.-.+.+.+++|+++.+..+. .+++..++..+...|. .-+.++.+|..++++|+|.+|..+.+..|+..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45788899999999887754 5789999999988884 5678889999999999999999999999999999999887
Q ss_pred HHHHHHHHh
Q psy3014 485 GYRQCSIAV 493 (570)
Q Consensus 485 ~l~~~~~~~ 493 (570)
....+..++
T Consensus 116 Lk~~Ie~~i 124 (144)
T 1y8m_A 116 LKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766665544
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.96 E-value=8.8e-05 Score=58.44 Aligned_cols=111 Identities=15% Similarity=0.208 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhccc---C
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---------ITFQNNIAAVYFERKEYDQCIEQYIQKIENRA---D 313 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~---~ 313 (570)
.-++++.-...++..|.|+.|+.....++....++ ..++..+|.+++..++|.+|...|+++++... .
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 34567777888899999999999999877764332 34788999999999999999999999874321 1
Q ss_pred h-------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHH
Q psy3014 314 F-------------------KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTL 356 (570)
Q Consensus 314 ~-------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 356 (570)
. ....++.+.++.||...+++.+|+..++.+-....++.+...
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~ 160 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINML 160 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHH
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHH
Confidence 1 011378899999999999999999999887665554444333
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.93 E-value=0.00022 Score=54.77 Aligned_cols=112 Identities=14% Similarity=0.055 Sum_probs=71.5
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCH------HHHHHHHHHHhhcccChh-----HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3014 275 EFDPTDITFQNNIAAVYFERKEY------DQCIEQYIQKIENRADFK-----LIAKALQRIGNCYKKMEDWKNAKVYFEK 343 (570)
Q Consensus 275 ~~~p~~~~~~~~la~~~~~~~~~------~~A~~~~~~~l~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 343 (570)
-+.|++++.|..........|+. ++-++.|++++..-|... .....|...+.. ...++.++|...|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 35788888888888888888888 788888888886655431 223444444433 344666666666666
Q ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Q psy3014 344 SMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPK 413 (570)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 413 (570)
++. .+...+.+|...|..-.++|+...|.+.+.+++.+.|....
T Consensus 86 a~~--------------------------~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 86 ARA--------------------------NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHH--------------------------HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHH--------------------------HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 665 33334666666666666777777777777777766665443
No 231
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.93 E-value=5.5e-05 Score=59.60 Aligned_cols=111 Identities=11% Similarity=0.065 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc---------hhhchhHHHhcccCHHHHHHHHhchhccC------C
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHI---------LFSNRSAAFAKEGNYEKALEDAEKTISLK------P 76 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~g~~~~A~~~~~~al~~~------p 76 (570)
-.++.....++..|.|+.|+-....++....+++. +++.+|.+++..|+|..|...|++++... |
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45788889999999999999999998877544443 67899999999999999999999986431 1
Q ss_pred -------------------CChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q psy3014 77 -------------------DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123 (570)
Q Consensus 77 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 123 (570)
...+..+.+|.||.++|++++|+..++.+-. ....+.+...|+.+|
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 1236889999999999999999999875422 234566677777665
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.92 E-value=0.00011 Score=55.23 Aligned_cols=83 Identities=13% Similarity=-0.086 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHhcCh---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy3014 411 DPKYYSNRAACYTKLAAF---DLGLKDCETCLKLDPK-FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486 (570)
Q Consensus 411 ~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 486 (570)
.+.+.+++|+++.+..+. .+++..++..+..+|. ..+.++.+|..++++|+|.+|..+.+.+++..|+|..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 456667777777666543 4577777777766663 356677777777777777777777777777777777776555
Q ss_pred HHHHHHh
Q psy3014 487 RQCSIAV 493 (570)
Q Consensus 487 ~~~~~~~ 493 (570)
..+..++
T Consensus 119 ~~Ie~ki 125 (134)
T 3o48_A 119 SMVEDKI 125 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.75 E-value=0.00077 Score=50.78 Aligned_cols=80 Identities=11% Similarity=0.032 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHH
Q psy3014 376 VKAEEAKERGNELFKNGKY---ADAVKEYTEAINRNPD-DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR 451 (570)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 451 (570)
-.+.+.+.+|+++.+..+. .+++..++..++.+|. ..+.++.+|..++++|+|++|..+.+.+++..|++..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3578899999999988764 5799999999998884 57899999999999999999999999999999999888765
Q ss_pred HHHH
Q psy3014 452 KGKI 455 (570)
Q Consensus 452 l~~~ 455 (570)
...+
T Consensus 118 k~~I 121 (134)
T 3o48_A 118 KSMV 121 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.68 E-value=0.0013 Score=50.22 Aligned_cols=81 Identities=11% Similarity=0.032 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHH
Q psy3014 375 PVKAEEAKERGNELFKNGKY---ADAVKEYTEAINRNPD-DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWI 450 (570)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 450 (570)
...+.+.+.+++++.+..+. .+++.+++..+...|. ..+.++.+|..++++|+|++|..+.+..++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45788999999999988765 4799999999998884 5779999999999999999999999999999999988766
Q ss_pred HHHHH
Q psy3014 451 RKGKI 455 (570)
Q Consensus 451 ~l~~~ 455 (570)
....+
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 235
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=3.2e-05 Score=51.68 Aligned_cols=54 Identities=17% Similarity=0.429 Sum_probs=49.7
Q ss_pred HHHHcCCchHHHhhcCHHHHHHHHHhhcCHHHHHH-hhcCHHHHHHHHHHHhcCc
Q psy3014 501 RKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSD-HLKNPEIASKIQKLVNSGL 554 (570)
Q Consensus 501 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 554 (570)
+..+..||++...+.||.+..+++.+.++|.++.. +++||++...++++++.++
T Consensus 16 ~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~dPrv~~~l~~L~g~~~ 70 (71)
T 2llv_A 16 IENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMATLMGVDL 70 (71)
T ss_dssp HHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTCHHHHHHHHHHHTTTT
T ss_pred HHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhCcHHHHHHHHHHcCCC
Confidence 45677899999999999999999999999999999 9999999999999987753
No 236
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.49 E-value=0.017 Score=45.12 Aligned_cols=199 Identities=14% Similarity=0.157 Sum_probs=122.9
Q ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHH
Q psy3014 259 KKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAK 338 (570)
Q Consensus 259 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 338 (570)
+-.+|+.++-.-.- +.|..++....++.+++-.|.|..|+-++... +. ..+.+.-+.||....++..|+
T Consensus 14 kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l-----NT---~Ts~YYk~LCy~klKdYkkA~ 82 (242)
T 3kae_A 14 RYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHKL-----NT---CTSKYYESLCYKKKKDYKKAI 82 (242)
T ss_dssp HTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHTC-----CB---HHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHhc-----ch---HHHHHHHHHHHHHHHHHHHHH
Confidence 44566666432222 24555566778888899999999988766432 22 566777889999999999999
Q ss_pred HHHHHHhc--ccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Q psy3014 339 VYFEKSMS--EHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEE-AKERGNELFKNGKYADAVKEYTEAINRNPDDPKYY 415 (570)
Q Consensus 339 ~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 415 (570)
.++++.+. ..+++++-..+. ..-.+|.+-+. +..+|.++...|+.++|+.++.......|-.+.+-
T Consensus 83 ~~le~il~~kvd~d~~~d~~~~-----------~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242)
T 3kae_A 83 KSLESILEGKVERDPDVDARIQ-----------EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE 151 (242)
T ss_dssp HHHHHHHTTCSBCCCCCCHHHH-----------TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhcccccCcccccccc-----------eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence 99999983 232222111111 11156666554 45689999999999999999999988776443322
Q ss_pred HHH-----------------HHHHHHhcChHHHH--------HHHHHHHhcCCCCHHHH-HHHHHHHHhCCCHHHHHHHH
Q psy3014 416 SNR-----------------AACYTKLAAFDLGL--------KDCETCLKLDPKFLKGW-IRKGKILQGMQQQSKAIDAY 469 (570)
Q Consensus 416 ~~l-----------------a~~~~~~~~~~~A~--------~~~~~al~~~p~~~~~~-~~l~~~~~~~g~~~~A~~~~ 469 (570)
+.+ +.--.+...+.... ...++....-|.....+ ...+.-|+.+|-.++...+|
T Consensus 152 nliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf 231 (242)
T 3kae_A 152 NLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACF 231 (242)
T ss_dssp HHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHH
Confidence 111 00000000011111 22333334455543332 34677889999999999999
Q ss_pred HHHHhhCCCc
Q psy3014 470 EKALELDASN 479 (570)
Q Consensus 470 ~~al~~~p~~ 479 (570)
...-..||..
T Consensus 232 ~~lR~kDP~F 241 (242)
T 3kae_A 232 ELVRRKDPMF 241 (242)
T ss_dssp HHHHHHSTTT
T ss_pred HHHHhcCCCc
Confidence 9999999963
No 237
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.12 E-value=0.17 Score=47.10 Aligned_cols=123 Identities=14% Similarity=0.196 Sum_probs=87.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhccc---ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHH
Q psy3014 285 NNIAAVYFERKEYDQCIEQYIQKIENRA---DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEME 361 (570)
Q Consensus 285 ~~la~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 361 (570)
..+|.+|+..|+|.+|.+.+.+..+... +.....+++..-..+|...+++.++...+.++....
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~------------- 169 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA------------- 169 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh-------------
Confidence 4789999999999999999988875322 234567888888999999999999999999886521
Q ss_pred HHHHHHHHHhcCChh-hHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCC--CH---HHHHHHHHHHHHhcC
Q psy3014 362 KKIKEEEKKAYIDPV-KAEEAKERGNELF-KNGKYADAVKEYTEAINRNPD--DP---KYYSNRAACYTKLAA 427 (570)
Q Consensus 362 ~a~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~--~~---~~~~~la~~~~~~~~ 427 (570)
.++..+|. .+.....-|..+. ..++|..|...|-+++..... ++ .+...++.|-...++
T Consensus 170 -------~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 170 -------NAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp -------HHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -------ccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 11112332 3455566788889 899999999999999754322 12 234445555555555
No 238
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.97 E-value=0.025 Score=44.18 Aligned_cols=105 Identities=18% Similarity=0.149 Sum_probs=82.5
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc------------
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL------------ 441 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------ 441 (570)
-|..++....++.+++-.|.|..|+-.+.. -+...+.+.-+.||.+.++|..|+..++..+.-
T Consensus 29 ~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~ 103 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI 103 (242)
T ss_dssp C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence 444556677889999999999998876643 356777888899999999999999999999832
Q ss_pred -----CCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 442 -----DPKFLKG-WIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 442 -----~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
+|.+.+. +..+|.++.+.|+.++|+.+|......+|-.+.+-
T Consensus 104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242)
T 3kae_A 104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE 151 (242)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence 2334443 45589999999999999999999999999766654
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.016 Score=58.89 Aligned_cols=126 Identities=11% Similarity=0.056 Sum_probs=87.2
Q ss_pred hcC-HHHHHHHHHHHhhcccChhHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHhccc-------CCHHHHHHHHHHHH
Q psy3014 294 RKE-YDQCIEQYIQKIENRADFKLIAKALQRIGNCYK---KMEDWKNAKVYFEKSMSEH-------RTPEIRTLISEMEK 362 (570)
Q Consensus 294 ~~~-~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~ 362 (570)
.++ ++.|+..+++....+|.. .+++..+.+.. ...+--+|+..+.+.++.. +..+.
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~----~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~--------- 327 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIH----DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA--------- 327 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH---------
T ss_pred cccHHHHHHHHHHHHHhhCCch----hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc---------
Confidence 444 688999999998888875 23333333222 2234456666666665410 00000
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHH
Q psy3014 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETC 438 (570)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 438 (570)
......|.....+...+..+...|+++-|+.+.++++...|.....|+.|+.+|..+|+|+.|+-.++.+
T Consensus 328 ------~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 328 ------DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ------ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 0000123334566677888899999999999999999999999999999999999999999999888766
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.012 Score=59.75 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHhc--------CCCC----------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 393 KYADAVKEYTEAINR--------NPDD----------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGK 454 (570)
Q Consensus 393 ~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 454 (570)
+--+|+..+.++++. .+.+ ...+..-+..+...|+++-|+.+.++|+...|.....|+.|+.
T Consensus 300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~ 379 (754)
T 4gns_B 300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLAR 379 (754)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 344677777776642 2222 2345556777888999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHH
Q psy3014 455 ILQGMQQQSKAIDAYEKA 472 (570)
Q Consensus 455 ~~~~~g~~~~A~~~~~~a 472 (570)
+|..+|+|+.|+-.+..+
T Consensus 380 vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 380 CHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccHHHHHHHHhcC
Confidence 999999999999887766
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.25 Score=47.35 Aligned_cols=102 Identities=12% Similarity=0.081 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHh----hcccCh
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD--PTD----ITFQNNIAAVYFERKEYDQCIEQYIQKI----ENRADF 314 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l----~~~~~~ 314 (570)
..+.....++.++...|++.+|...+.....-. ..+ .+.+.....++...+++.+|...++++. ...+..
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 456777889999999999999999999876431 111 4677788889999999999999998874 222333
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 315 KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
......+...|.++...++|.+|-.+|..+..
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34466777888999999999999999988876
No 242
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.33 E-value=0.47 Score=49.87 Aligned_cols=178 Identities=13% Similarity=0.064 Sum_probs=102.4
Q ss_pred HHHHccCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCH
Q psy3014 256 EAYKKKNFEEALA-HYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDW 334 (570)
Q Consensus 256 ~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 334 (570)
.....+++++|.. .+.. -| +.......+..+...|.+++|++..+ +|. .. .......|++
T Consensus 608 ~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~-----~~~------~~---f~~~l~~~~~ 668 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP-----DQD------QK---FELALKVGQL 668 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC-----CHH------HH---HHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC-----Ccc------hh---eehhhhcCCH
Confidence 3456788888866 4411 11 01222566667777888888776542 111 11 2334667888
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------
Q psy3014 335 KNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAIN-------- 406 (570)
Q Consensus 335 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-------- 406 (570)
+.|.+..+ ..++...|..+|..+.+.++++.|+.+|.++-.
T Consensus 669 ~~A~~~~~-------------------------------~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~ 717 (814)
T 3mkq_A 669 TLARDLLT-------------------------------DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLH 717 (814)
T ss_dssp HHHHHHHT-------------------------------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHH-------------------------------hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHH
Confidence 88877752 223567889999999999999999999988621
Q ss_pred cCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc---HHHH
Q psy3014 407 RNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN---AEAV 483 (570)
Q Consensus 407 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 483 (570)
....+...+..++......|++..|...|.+. .+ ......+|.+.+++++|...-++ ..|.. +.+.
T Consensus 718 ~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~---~~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~ 786 (814)
T 3mkq_A 718 SSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GD---IQGAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDIV 786 (814)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TC---HHHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CC---HHHHHHHHHHcCChHHHHHHHHH---hCCChHHHHHHH
Confidence 12344455555566666666666665554432 11 11233456666666666655443 44444 2344
Q ss_pred HHHHHHHHHhc
Q psy3014 484 EGYRQCSIAVS 494 (570)
Q Consensus 484 ~~l~~~~~~~~ 494 (570)
..++.-+...|
T Consensus 787 ~~~~~~L~~~~ 797 (814)
T 3mkq_A 787 TKWKENLILNG 797 (814)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHhcc
Confidence 44444444444
No 243
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.30 E-value=0.71 Score=43.00 Aligned_cols=97 Identities=15% Similarity=0.079 Sum_probs=77.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc----cChhHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDPT--D----ITFQNNIAAVYFERKEYDQCIEQYIQKIENR----ADFKLIAKA 320 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~ 320 (570)
..+|..|+..|+|.+|.+.+.+.+..-.. + .+++..-..+|...+++.++...+.++.... ++....+..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 36899999999999999999988874221 1 4566777888999999999999999987543 333345666
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHhcc
Q psy3014 321 LQRIGNCYK-KMEDWKNAKVYFEKSMSE 347 (570)
Q Consensus 321 ~~~l~~~~~-~~~~~~~A~~~~~~~~~~ 347 (570)
...-|..+. ..++|..|..+|-.+...
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 777788899 899999999999888753
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.25 E-value=0.04 Score=51.88 Aligned_cols=99 Identities=15% Similarity=0.092 Sum_probs=81.0
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--------c--------------chhhchhHHHhcccCHHHHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN--------H--------------ILFSNRSAAFAKEGNYEKALE 66 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------~--------------~~~~~la~~~~~~g~~~~A~~ 66 (570)
...+.+...|......|+.+.|...+.+|+.+.... . .+...++..+...|++.+|+.
T Consensus 113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~ 192 (388)
T 2ff4_A 113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 192 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 344566667777778899999999999999885321 1 122245667788999999999
Q ss_pred HHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhc
Q psy3014 67 DAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107 (570)
Q Consensus 67 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 107 (570)
.+..++..+|-+..++..+..++...|+..+|+..|+++.+
T Consensus 193 ~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 193 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988643
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.89 Score=43.54 Aligned_cols=199 Identities=13% Similarity=0.065 Sum_probs=121.6
Q ss_pred ccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHH-HcC
Q psy3014 260 KKNFEEALAHYNKAVEF------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYK-KME 332 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~-~~~ 332 (570)
.|++++|++.+...-+. .+....+...+..++...|+|+...+.+.-..+.....+...........-+. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 36788888777544432 24457778888889999999998877776555443333211111111111111 111
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--C
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP--D 410 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~ 410 (570)
..+... ....+..-.. ..+..+...-........++.++...|++.+|...+.......- .
T Consensus 109 ~~d~~~--~~~~i~~l~~---------------vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~ 171 (445)
T 4b4t_P 109 SLDLNT--RISVIETIRV---------------VTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSM 171 (445)
T ss_dssp TTHHHH--HHHHHHCCSS---------------SSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSS
T ss_pred chhHHH--HHHHHHHHHH---------------HhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc
Confidence 111100 0011100000 00000001123456677899999999999999999998764311 1
Q ss_pred ----CHHHHHHHHHHHHHhcChHHHHHHHHHHHh---cCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 411 ----DPKYYSNRAACYTKLAAFDLGLKDCETCLK---LDPKFL----KGWIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 411 ----~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
-.+++.....+|...+++..|...++++.. ..+..+ ..+...|.++...++|.+|-.+|..++..
T Consensus 172 ~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 172 EMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 145788889999999999999999998742 223332 34566899999999999999999999865
No 246
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.22 E-value=0.16 Score=43.86 Aligned_cols=129 Identities=12% Similarity=0.115 Sum_probs=88.5
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCH
Q psy3014 255 NEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDW 334 (570)
Q Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 334 (570)
..+++.|..++|+......++.+|.|......+..+++-.|++++|...++.+.+++|+.......|..+-.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE------ 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA------ 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH------
Confidence 34567899999999999999999999999999999999999999999999999999999844333333222221
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q psy3014 335 KNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD 411 (570)
Q Consensus 335 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 411 (570)
..=...+.-...+.+. ..|.........+......|+.++|...-.++++..|..
T Consensus 79 ----~~R~~vfaG~~~P~~~------------------g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 79 ----QARKDFAQGAATAKVL------------------GENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp ----HHHHHHTTSCCCEECC------------------CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred ----HHHHHHHcCCCCCCCC------------------CCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 1111222211111000 122223333445666677899999999988888876643
No 247
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.12 E-value=0.26 Score=42.55 Aligned_cols=64 Identities=20% Similarity=0.121 Sum_probs=55.7
Q ss_pred HHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHH
Q psy3014 53 AAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMK 116 (570)
Q Consensus 53 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (570)
...++.|+.++|+..+...++.+|.+......+..++.-.|+|+.|...++.+.+++|+.....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 3567888999999999999999999999999999999999999999999999999999876543
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.46 Score=38.23 Aligned_cols=45 Identities=13% Similarity=0.089 Sum_probs=25.3
Q ss_pred HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy3014 258 YKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQK 307 (570)
Q Consensus 258 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 307 (570)
...|+++.|.+..+.. ++...|..+|......|+++-|..+|.++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3456666665555443 44555666666666666666555555553
No 249
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.35 Score=38.90 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 279 TDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 279 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
.++...+.++ ...|+++.|.+..+.. ++ ...|..+|......|+++-|..+|.++-.
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----ND---SITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CC---HHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----CC---HHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 3455555544 6789999999988765 34 67899999999999999999999998865
No 250
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.65 E-value=1.1 Score=47.08 Aligned_cols=166 Identities=13% Similarity=0.010 Sum_probs=102.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKK 330 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 330 (570)
......+...|.+++|+...+ ++...+ ......|++++|.+..+.. ++ ...|..+|..+..
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~~~-----~~---~~~W~~la~~al~ 693 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLTDE-----SA---EMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHTTC-----CC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHHhh-----Cc---HhHHHHHHHHHHH
Confidence 455666777888888876553 333223 3457789999999886432 33 6789999999999
Q ss_pred cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q psy3014 331 MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD 410 (570)
Q Consensus 331 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 410 (570)
.++++.|..+|.++-. +..+...+. ...+.+.+..++......|++..|..+|.+. +
T Consensus 694 ~~~~~~A~~~y~~~~d-------------~~~l~~l~~-----~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g 750 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAHD-------------LESLFLLHS-----SFNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----G 750 (814)
T ss_dssp TTCHHHHHHHHHHHTC-------------HHHHHHHHH-----HTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----T
T ss_pred cCCHHHHHHHHHHccC-------------hhhhHHHHH-----HcCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----C
Confidence 9999999999998754 111111111 1223444556677777777777776665442 1
Q ss_pred CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCCHHH
Q psy3014 411 DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF---LKGWIRKGKILQGMQQQSK 464 (570)
Q Consensus 411 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~ 464 (570)
++ .....+|...+++++|+...++ ..|.. +......+.-+...|+.+.
T Consensus 751 ~~---~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~~~~ 801 (814)
T 3mkq_A 751 DI---QGAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGKNTV 801 (814)
T ss_dssp CH---HHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred CH---HHHHHHHHHcCChHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccchhH
Confidence 11 1234456666777777665554 34433 2444455666666776543
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.56 E-value=0.27 Score=46.21 Aligned_cols=92 Identities=14% Similarity=0.101 Sum_probs=69.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 383 ERGNELFKNGKYADAVKEYTEAINRNPDD----------------------PKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 383 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
..|......|+.+.|...+.+++.+.... ..+...++..+...|++.+|+..+..++.
T Consensus 120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~ 199 (388)
T 2ff4_A 120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 199 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444556788888999999988764221 11344566777788888888888888888
Q ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 441 LDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
.+|-+..++..+-.++...|+..+|+..|+++-.
T Consensus 200 ~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 200 EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888888888888888888887644
No 252
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.62 Score=44.70 Aligned_cols=203 Identities=11% Similarity=0.027 Sum_probs=91.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHhcCHHHHH----------HHHHHHhh
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVE-----------FDPTDITFQNNIAAVYFERKEYDQCI----------EQYIQKIE 309 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~~~~~~A~----------~~~~~~l~ 309 (570)
...-..++..+++++|..+-...+. +++-...+|+..+.++...|+..... ..+-.+++
T Consensus 140 lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~r 219 (523)
T 4b4t_S 140 LLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLK 219 (523)
T ss_dssp ---------------------------------------------------------------CHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHH
Confidence 3344456778899999888776651 13445677888888888777765432 12222221
Q ss_pred ---cccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q psy3014 310 ---NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGN 386 (570)
Q Consensus 310 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 386 (570)
+.-+....+..+..+-..|...+.++.|..+..++.- |.... .++.....++.+|.
T Consensus 220 ta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~-------------------sn~q~~rY~YY~GR 278 (523)
T 4b4t_S 220 IASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEY--PHTDV-------------------SSSLEARYFFYLSK 278 (523)
T ss_dssp HCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTS-------------------CHHHHHHHHHHHHH
T ss_pred HHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccC-------------------CHHHHHHHHHHHHH
Confidence 1122233477888899999999999999999999852 21100 12234667788999
Q ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC---HHHHHHHHHHH
Q psy3014 387 ELFKNGKYADAVKEYTEAINRNPDDP-------KYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF---LKGWIRKGKIL 456 (570)
Q Consensus 387 ~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~ 456 (570)
++.-+++|.+|..++..|+...|.+. .++-.+..+-.-+|+...-. .| ..|.. ...|..++.++
T Consensus 279 I~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~-lf-----~q~~l~~~L~pY~~Lv~Av 352 (523)
T 4b4t_S 279 INAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELS-FF-----HQSNMQKSLLPYYHLTKAV 352 (523)
T ss_dssp HHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHH-HH-----TTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChH-Hh-----hchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999887542 23223333334457654311 11 12222 22355566665
Q ss_pred HhCCC---HHHHHHHHHHHHhhCCCcHH
Q psy3014 457 QGMQQ---QSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 457 ~~~g~---~~~A~~~~~~al~~~p~~~~ 481 (570)
+.|+ +..+++-++..+..+-+..-
T Consensus 353 -r~GdL~~F~~~L~~h~~~F~~Dgty~L 379 (523)
T 4b4t_S 353 -KLGDLKKFTSTITKYKQLLLKDDTYQL 379 (523)
T ss_dssp -HHTCHHHHHHHHHHTHHHHHHTTCTHH
T ss_pred -HcCCHHHHHHHHHHhcceeccCChhHH
Confidence 3354 55666666777776655443
No 253
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.47 E-value=0.098 Score=50.54 Aligned_cols=80 Identities=13% Similarity=0.006 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG 458 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 458 (570)
..+..+|.+......+..|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|-+++......+.+..++...+.+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 46677899888888999999999999999999999999999999999999999999999988777788888888877654
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.057 Score=51.65 Aligned_cols=109 Identities=11% Similarity=-0.012 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHH
Q psy3014 280 DITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISE 359 (570)
Q Consensus 280 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 359 (570)
-..++..+|..|...|++++|.+.|.++.............+..+..++...+++..+...+.++.......
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~-------- 201 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG-------- 201 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC--------
Confidence 345788999999999999999999999987765555568889999999999999999999999986532211
Q ss_pred HHHHHHHHHHHhcCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q psy3014 360 MEKKIKEEEKKAYIDPV-KAEEAKERGNELFKNGKYADAVKEYTEAINRNP 409 (570)
Q Consensus 360 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 409 (570)
.+|. ........|.++...++|.+|...|-.++....
T Consensus 202 -------------~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 202 -------------GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp -------------CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred -------------CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 1221 123445567888899999999999998876543
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.13 Score=49.13 Aligned_cols=103 Identities=10% Similarity=-0.102 Sum_probs=82.1
Q ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC--CCCH---
Q psy3014 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD---DPKYYSNRAACYTKLAAFDLGLKDCETCLKLD--PKFL--- 446 (570)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~--- 446 (570)
.....++..+|..+...|++++|.++|.++...... ..+.++....++...+++..+...+.++-... ..++
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 334557788999999999999999999999876433 36788889999999999999999999986542 1222
Q ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 447 -KGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 447 -~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
......|.++...++|.+|..+|-.++....
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 2344567888899999999999999887643
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.065 Score=51.31 Aligned_cols=124 Identities=9% Similarity=-0.047 Sum_probs=68.4
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHH----------HHHHHHHhc-----CCC-CHHHHHHHHHHHHHhcChHHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAV----------KEYTEAINR-----NPD-DPKYYSNRAACYTKLAAFDLGLKDCE 436 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~----------~~~~~al~~-----~p~-~~~~~~~la~~~~~~~~~~~A~~~~~ 436 (570)
.++-.+.+|+..+.++...|+..... ..+-.+++. ++. ...++..+-..|...+.|+.|.....
T Consensus 176 lD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvs 255 (523)
T 4b4t_S 176 LNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFIS 255 (523)
T ss_dssp ---------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHh
Confidence 45556777888888877777665432 222233322 222 35678888999999999999999999
Q ss_pred HHHhcCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH-------HHHHHHHHHHHHhcCCHH
Q psy3014 437 TCLKLDPKF-------LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA-------EAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 437 ~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~e 498 (570)
++. .|.. ...++.+|.++.-+++|.+|.+++..|+...|.+. .++..+.-+..-+|+.++
T Consensus 256 k~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~ 329 (523)
T 4b4t_S 256 KLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPE 329 (523)
T ss_dssp HHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred cCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCC
Confidence 985 3322 34567789999999999999999999999887653 233344555555777554
No 257
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.24 E-value=0.12 Score=50.06 Aligned_cols=65 Identities=11% Similarity=0.033 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy3014 359 EMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYT 423 (570)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 423 (570)
.+..|...|.++....|.....+..+|.+....|+.-+|+-+|.+++......+.+..++...+.
T Consensus 167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666555555555555555544
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.09 E-value=3.1 Score=41.57 Aligned_cols=107 Identities=4% Similarity=-0.087 Sum_probs=62.0
Q ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc------------------C-----CCC
Q psy3014 389 FKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL------------------D-----PKF 445 (570)
Q Consensus 389 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------------~-----p~~ 445 (570)
++.|+++.|..+|...-...+..+...+.+|.++...|+.++|...|+++... . +..
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~ 375 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNV 375 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCC
T ss_pred HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhH
Confidence 34466666666665543332334555666666666666666666666655431 0 000
Q ss_pred -----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCH
Q psy3014 446 -----LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 446 -----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 497 (570)
.......+..+...|....|...+...+... ++.-...++.+....|...
T Consensus 376 ~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~ 430 (618)
T 1qsa_A 376 DSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWD 430 (618)
T ss_dssp CCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHH
T ss_pred HhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChH
Confidence 1123456677888899999988888777642 2344445666656666543
No 259
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.013 Score=39.12 Aligned_cols=65 Identities=31% Similarity=0.684 Sum_probs=57.4
Q ss_pred cccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHh-hccCccHHHHHHHHhcCcc
Q psy3014 135 PFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTT-KLKDPRMMTTLSVLLGVNM 199 (570)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 199 (570)
.++..|+.++.+..+..+|....++.++.+...+..+..+|..... ++.++++...+..+.++..
T Consensus 5 ~~~~~f~~p~~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~dPrv~~~l~~L~g~~~ 70 (71)
T 2llv_A 5 GLTQLFADPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMATLMGVDL 70 (71)
T ss_dssp CCHHHHHSSSCHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTCHHHHHHHHHHHTTTT
T ss_pred hHhhhccChHHHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhCcHHHHHHHHHHcCCC
Confidence 3445566778888899999999999999999999999999999999 9999999999999987653
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.09 E-value=2.8 Score=45.84 Aligned_cols=149 Identities=12% Similarity=0.058 Sum_probs=96.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc-cC------------------
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR-AD------------------ 313 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~------------------ 313 (570)
+...+...+.++-|.. .+...|.++...+.+|.++...|++++|..+|+++-..- .+
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3344555666665544 344567888888999999999999999999998874211 00
Q ss_pred -hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh-hHHHHHHHHHHHHHC
Q psy3014 314 -FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV-KAEEAKERGNELFKN 391 (570)
Q Consensus 314 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 391 (570)
....+..|..+..++.+.+.++.+++..+.|++.... .++. ....|..+-..+...
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~----------------------~~~~~~~~l~~~iFk~~L~l 951 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKET----------------------DDEDLSIAITHETLKTACAA 951 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCS----------------------CCHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccC----------------------CChhhHHHHHHHHHHHHHhh
Confidence 0112345667777888888888888888888764321 1121 223567777788889
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCh
Q psy3014 392 GKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAF 428 (570)
Q Consensus 392 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 428 (570)
|+|++|...+...-.. ......+..+....+..|..
T Consensus 952 ~~ye~Ay~aL~~~pd~-~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 952 GKFDAAHVALMVLSTT-PLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp CCSGGGGHHHHHHHHS-SSCHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHhCCCh
Confidence 9999998777544222 22344555555555555543
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.02 E-value=5.5 Score=39.80 Aligned_cols=187 Identities=9% Similarity=-0.019 Sum_probs=113.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITF----QNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 252 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
..+.......+.+.|...+.......+-+... +..++.-....+...++...+.+......++ ...-...+ .
T Consensus 219 ~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~r-~ 294 (618)
T 1qsa_A 219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST---SLIERRVR-M 294 (618)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH---HHHHHHHH-H
T ss_pred HHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh---HHHHHHHH-H
Confidence 34444555668888888887776543333322 2223333333443456666666655444443 22222233 3
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q psy3014 328 YKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 407 (570)
....|+++.|...|.+.-. .....+...+-+|..+...|+.++|...|.++...
T Consensus 295 Alr~~d~~~a~~~~~~l~~--------------------------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~ 348 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPM--------------------------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ 348 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCT--------------------------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHCCCHHHHHHHHHHccc--------------------------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 3456888888888877654 22345666677777777788888888777776532
Q ss_pred C-----------------------CC--C---HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q psy3014 408 N-----------------------PD--D---PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM 459 (570)
Q Consensus 408 ~-----------------------p~--~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 459 (570)
. +. . ...-...+..+...|....|...+...+... +......++.+....
T Consensus 349 ~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~ 426 (618)
T 1qsa_A 349 RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNN 426 (618)
T ss_dssp CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHC
Confidence 0 00 0 0123456777889999999999888877642 244556778888888
Q ss_pred CCHHHHHHHHH
Q psy3014 460 QQQSKAIDAYE 470 (570)
Q Consensus 460 g~~~~A~~~~~ 470 (570)
|.+..++....
T Consensus 427 ~~~~~~v~~~~ 437 (618)
T 1qsa_A 427 QWWDLSVQATI 437 (618)
T ss_dssp TCHHHHHHHHH
T ss_pred CChHHHHHHHH
Confidence 88888775544
No 262
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.64 E-value=8 Score=40.43 Aligned_cols=208 Identities=10% Similarity=0.016 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCY 328 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 328 (570)
+-+.+|.++.-.|+-+.....+..+.+...++..-...+|..+...|+.+.+-...+.... ..+......+-..+|..|
T Consensus 492 AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~-~~dp~vRygaa~alglAy 570 (963)
T 4ady_A 492 AALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLA-SDESLLRYGGAFTIALAY 570 (963)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH-CSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHh
Confidence 4455788888888877777777766654433333333444445566777666655555443 333323345556778888
Q ss_pred HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 408 (570)
...|+...-...+..+... ..++....-.+|..+...|+.+.+...+....+
T Consensus 571 aGTGn~~aIq~LL~~~~~d--------------------------~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~-- 622 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSD--------------------------SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK-- 622 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHC--------------------------SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--
T ss_pred cCCCCHHHHHHHHHHhccC--------------------------CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--
Confidence 8899976555577666652 112222222333334444554434443332222
Q ss_pred CCCHHHHHHHHHHHHHh--cC-hHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhCCC-----HHHHHHHHHHHHhhCC
Q psy3014 409 PDDPKYYSNRAACYTKL--AA-FDLGLKDCETCLKLDPKFL---KGWIRKGKILQGMQQ-----QSKAIDAYEKALELDA 477 (570)
Q Consensus 409 p~~~~~~~~la~~~~~~--~~-~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~-----~~~A~~~~~~al~~~p 477 (570)
..++.+.+..+.++-.. |+ ..+|+..+.+... +++.. .+...+|.+.....+ ..+-++.+.+.+.-.-
T Consensus 623 ~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~ 701 (963)
T 4ady_A 623 SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKH 701 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSS
T ss_pred cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhccc
Confidence 23566555554444333 22 3678887777754 44432 245556666655443 3334444444443222
Q ss_pred CcHHHHHHH
Q psy3014 478 SNAEAVEGY 486 (570)
Q Consensus 478 ~~~~~~~~l 486 (570)
.++.++...
T Consensus 702 ~d~~~~fga 710 (963)
T 4ady_A 702 QEGLAKFGA 710 (963)
T ss_dssp SCHHHHHHH
T ss_pred ccHHHHHHH
Confidence 344444433
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.62 E-value=1.5 Score=47.94 Aligned_cols=86 Identities=12% Similarity=0.043 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCH----HHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDP-TDI----TFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKAL 321 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 321 (570)
+.-|..+..++.+.+.++.++++...|++..+ ++. ..|..+=..+...|+|++|...+...- +......++
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p----d~~~r~~cL 974 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS----TTPLKKSCL 974 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH----HSSSCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC----CHHHHHHHH
Confidence 34566677788888999999999999988654 332 256667777888899998877775432 211124555
Q ss_pred HHHHHHHHHcCCHHH
Q psy3014 322 QRIGNCYKKMEDWKN 336 (570)
Q Consensus 322 ~~l~~~~~~~~~~~~ 336 (570)
..+-......|..+.
T Consensus 975 r~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 975 LDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHCCHHH
T ss_pred HHHHHHHHhCCChhh
Confidence 556555555555443
No 264
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.20 E-value=1.7 Score=45.59 Aligned_cols=105 Identities=6% Similarity=-0.011 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc--ccChhHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEF----DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN--RADFKLIA 318 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~ 318 (570)
..-..+..+-..+.+.|+.++|..+|.+..+. ..-+...|..+...|.+.|+.++|.++|++..+. .|+ .
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD----v 200 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD----L 200 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC----H
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc----H
Confidence 45667888999999999999999999776432 3446788999999999999999999999999754 566 6
Q ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHhcccCCHHH
Q psy3014 319 KALQRIGNCYKKMED-WKNAKVYFEKSMSEHRTPEI 353 (570)
Q Consensus 319 ~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~ 353 (570)
.+|..+-.++.+.|+ .++|...|++.....-.++.
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~ 236 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCCh
Confidence 778888888889887 57899999999887655443
No 265
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.17 E-value=1.7e-05 Score=73.73 Aligned_cols=224 Identities=14% Similarity=0.191 Sum_probs=134.9
Q ss_pred CCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q psy3014 43 TNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV 122 (570)
Q Consensus 43 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 122 (570)
+.+.+|..+|.+++..++..+|++.|-++ +++..+...-.+..+.|++++=+.++.-+-+.-. .+.+-..|..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k-e~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC-STTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccHHHHHHH
Confidence 45789999999999999999999988665 3444566667777789999999998887776532 23333344444
Q ss_pred HHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCC
Q psy3014 123 RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSST 202 (570)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (570)
|.... . ...+...+..++.
T Consensus 126 yAk~~-r---L~elEefl~~~N~--------------------------------------------------------- 144 (624)
T 3lvg_A 126 LAKTN-R---LAELEEFINGPNN--------------------------------------------------------- 144 (624)
T ss_dssp HHTSC-S---SSTTTSTTSCCSS---------------------------------------------------------
T ss_pred HHhhC-c---HHHHHHHHcCCCc---------------------------------------------------------
Confidence 44311 1 1111111110000
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Q psy3014 203 MGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDIT 282 (570)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 282 (570)
.-....|.-++..|.|+.|.-+|... .
T Consensus 145 ---------------------------------------------A~iq~VGDrcf~e~lYeAAKilys~i--------s 171 (624)
T 3lvg_A 145 ---------------------------------------------AHIQQVGDRCYDEKMYDAAKLLYNNV--------S 171 (624)
T ss_dssp ---------------------------------------------SCTHHHHHHHHHSCCSTTSSTTGGGS--------C
T ss_pred ---------------------------------------------ccHHHHHHHHHHccCHHHHHHHHHhC--------c
Confidence 00124677888888888887666542 2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q psy3014 283 FQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362 (570)
Q Consensus 283 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (570)
-|..++.++..+|+|..|++.-+++ ++ +.+|-....++...+++.-|..+--..+-
T Consensus 172 N~akLAstLV~L~~yq~AVdaArKA-----ns---~ktWKeV~~ACvd~~EfrLAqicGLniIv---------------- 227 (624)
T 3lvg_A 172 NFGRLASTLVHLGEYQAAVDGARKA-----NS---TRTWKEVCFACVDGKEFRLAQMCGLHIVV---------------- 227 (624)
T ss_dssp CCTTTSSSSSSCSGGGSSTTTTTTC-----CS---SCSHHHHTHHHHHSCTTTTTTHHHHHHHC----------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhc-----CC---hhHHHHHHHHHhCchHHHHHHHhcchhcc----------------
Confidence 2345677777888888777765544 22 45666667777777777777666555543
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy3014 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK 424 (570)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 424 (570)
.|+. +-.+...|...|.|++-+..++.++.+..-+...+..||.+|.+
T Consensus 228 -----------hade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 228 -----------HADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp -----------CSSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred -----------cHHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 1111 11122334556666666666666666655566666666665543
No 266
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.12 E-value=1.2 Score=46.62 Aligned_cols=101 Identities=8% Similarity=-0.076 Sum_probs=78.8
Q ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCCCHHH
Q psy3014 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINR----NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL--DPKFLKG 448 (570)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 448 (570)
......+..+-..+.+.|+.++|...|.+.-+. ..-+...|+.+-..|.+.|+.++|.+.|++.... .| +...
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvT 202 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLS 202 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHH
Confidence 334556778888899999999999999765432 3347888999999999999999999999988764 45 4667
Q ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHhhC
Q psy3014 449 WIRKGKILQGMQQ-QSKAIDAYEKALELD 476 (570)
Q Consensus 449 ~~~l~~~~~~~g~-~~~A~~~~~~al~~~ 476 (570)
|..+-.++.+.|+ .++|.+.|++..+..
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 7777778888887 478888888887653
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.82 E-value=15 Score=32.88 Aligned_cols=29 Identities=10% Similarity=0.045 Sum_probs=23.8
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
.-.++..+..+|..+.+.|++.+|..+|-
T Consensus 130 ~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 130 KFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 34578889999999999999988888774
No 268
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=85.02 E-value=0.43 Score=30.66 Aligned_cols=55 Identities=11% Similarity=0.226 Sum_probs=47.1
Q ss_pred hHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCc
Q psy3014 144 NIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVN 198 (570)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (570)
+.+..+..+|.....+.++.+...+..+..+|.....+++++++...+..+.++.
T Consensus 3 e~~~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP~v~~~~~~L~~~~ 57 (62)
T 2lnm_A 3 EVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQLF 57 (62)
T ss_dssp HHHHHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhChHHHHHHHHHHHHh
Confidence 3455666777777888999999999999999999999999999999998887653
No 269
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.77 E-value=13 Score=39.54 Aligned_cols=95 Identities=15% Similarity=0.053 Sum_probs=72.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-C--------------------
Q psy3014 384 RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL-D-------------------- 442 (570)
Q Consensus 384 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~-------------------- 442 (570)
+...+...|.++-|. +.+...|.++..-+.+|.++...|++++|..+|++|-.- .
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 556667788877554 456778888888899999999999999999999986421 0
Q ss_pred CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-CCCcHHH
Q psy3014 443 PK--FLKGWIRKGKILQGMQQQSKAIDAYEKALEL-DASNAEA 482 (570)
Q Consensus 443 p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~ 482 (570)
++ ....|.....++.+.|-++.++..-+.|++. .++++..
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l 934 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDL 934 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccc
Confidence 01 1235667888999999999999999999964 4555553
No 270
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=79.94 E-value=3.9 Score=28.02 Aligned_cols=34 Identities=26% Similarity=0.168 Sum_probs=26.9
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKL 40 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 40 (570)
.-+.+-.+...|...-..|+|++|+.+|.++++.
T Consensus 15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3456777888888888889999888888887753
No 271
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=79.30 E-value=7.1 Score=37.13 Aligned_cols=62 Identities=10% Similarity=-0.049 Sum_probs=35.3
Q ss_pred HHHHHHHhcChHHHHHHHHHHHhc--------CCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-CCCc
Q psy3014 418 RAACYTKLAAFDLGLKDCETCLKL--------DPK--FLKGWIRKGKILQGMQQQSKAIDAYEKALEL-DASN 479 (570)
Q Consensus 418 la~~~~~~~~~~~A~~~~~~al~~--------~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~ 479 (570)
+-.+|++.|+...+...++..-.. .|. ....+|.+|.++...++|.+|.+++..|+.. .|.+
T Consensus 182 L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 182 LNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 345555566555555555432221 111 1344566777777777777777777777776 5543
No 272
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.23 E-value=39 Score=30.47 Aligned_cols=110 Identities=8% Similarity=0.024 Sum_probs=55.1
Q ss_pred HHHhcCHHHHHHHHHHHhhc---ccChhHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Q psy3014 291 YFERKEYDQCIEQYIQKIEN---RADFKLIAKALQRIGNCYKKMED--WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365 (570)
Q Consensus 291 ~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 365 (570)
|.+.++|++|++++...... ........+....+..+|.+.+- -++...-+.+.+...+..+. .+..-..+++.
T Consensus 45 y~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p-~r~~fi~~ai~ 123 (336)
T 3lpz_A 45 YSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEP-VRKRFVKEMID 123 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCH-HHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCc-HHHHHHHHHHH
Confidence 44556666666654443211 11111112333333344444331 12333444444444443221 12233444444
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Q psy3014 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEY 401 (570)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 401 (570)
.-.+.-...-.+++.+..+|..+++.+++.+|..+|
T Consensus 124 WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 124 WSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 444422234467889999999999999999998877
No 273
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=77.68 E-value=8.7 Score=25.40 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 486 (570)
..+|..+...|++++|..+|-+|+...|+=.....-+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~ 57 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 57 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3578888888888888888888888888765554433
No 274
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=74.04 E-value=18 Score=27.49 Aligned_cols=51 Identities=6% Similarity=-0.033 Sum_probs=24.2
Q ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q psy3014 259 KKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309 (570)
Q Consensus 259 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 309 (570)
.+|+-++-.+.+...+...|-++..+..+|.+|.+.|+..+|.+.+.++.+
T Consensus 103 ~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 103 IQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 444444444444444444444455555555555555555555555555443
No 275
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=73.09 E-value=6.4 Score=26.96 Aligned_cols=34 Identities=21% Similarity=0.105 Sum_probs=26.8
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKL 40 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 40 (570)
....+-.+...|...-..|+|++|+.+|.++++.
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3456777888888888889988888888887753
No 276
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=72.94 E-value=5.9 Score=27.37 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=25.7
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKL 40 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 40 (570)
+..+..+...|...-..|+|++|+.+|..+++.
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445677888888888888888888888887753
No 277
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=72.49 E-value=7.9 Score=26.30 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=28.7
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLD 41 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 41 (570)
.++..+...|..+++.++|.+|...|+++....
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 578889999999999999999999999987554
No 278
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.55 E-value=1.2e+02 Score=32.40 Aligned_cols=55 Identities=7% Similarity=-0.019 Sum_probs=43.2
Q ss_pred hchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhc
Q psy3014 49 SNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107 (570)
Q Consensus 49 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 107 (570)
..+...+...|.++-|.+ .+...|.++..-+.+|.++...|++++|..+|+++-.
T Consensus 814 ~~l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 345666677788776544 4466677777889999999999999999999998763
No 279
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=70.24 E-value=0.21 Score=47.20 Aligned_cols=105 Identities=16% Similarity=0.204 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCC---------------
Q psy3014 13 LLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD--------------- 77 (570)
Q Consensus 13 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------------- 77 (570)
..-..|..++..|.|+.|.-+|..+ .-|..|+.|+..+|+|+.|++..++|-...--
T Consensus 146 ~iq~VGDrcf~e~lYeAAKilys~i--------sN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrL 217 (624)
T 3lvg_A 146 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRL 217 (624)
T ss_dssp CTHHHHHHHHHSCCSTTSSTTGGGS--------CCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTT
T ss_pred cHHHHHHHHHHccCHHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHH
Confidence 3456799999999999888777543 44678999999999999999988887432110
Q ss_pred ----------ChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 78 ----------WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 78 ----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
.++-+-.+...|...|.+++=+..++.++.+..-+......|+.+|..
T Consensus 218 AqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 218 AQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp TTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 001122233456677888999999999999888899999999888876
No 280
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=70.21 E-value=1.1e+02 Score=32.14 Aligned_cols=44 Identities=9% Similarity=-0.133 Sum_probs=33.0
Q ss_pred hhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhc
Q psy3014 47 LFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYL 92 (570)
Q Consensus 47 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 92 (570)
-|.....|.+++++.+.+.+.|.+++. .++...-+.+|..+.+.
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL~~~ 275 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDLVSS 275 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHHhcc
Confidence 366788899999999999999999875 34555666666666553
No 281
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=70.21 E-value=15 Score=24.31 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=26.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITF 283 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 283 (570)
...+|..+...|++++|..+|-+|+...|.-...
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 3567888888888888888888888888776554
No 282
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=70.17 E-value=34 Score=26.07 Aligned_cols=55 Identities=13% Similarity=-0.040 Sum_probs=38.5
Q ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Q psy3014 387 ELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441 (570)
Q Consensus 387 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 441 (570)
.+..+|+-++-.+.+...+.-.+-+|..+..+|.+|.+.|+..+|.+.+.+|-+.
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4456777777777777665656666788888888888888888888777777653
No 283
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=66.98 E-value=9 Score=26.93 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=23.5
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIK 39 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 39 (570)
...+-.+...|...-..|+|++|+.+|..+++
T Consensus 12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566777777777788888888877777664
No 284
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=65.81 E-value=11 Score=26.00 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAI 38 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 38 (570)
..+..+-.++..+...|.|++||++.+++.
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 456677788888889999999988877765
No 285
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=64.59 E-value=11 Score=25.95 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=24.7
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIK 39 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 39 (570)
-..+..+...|...-..|+|++|+.+|..+++
T Consensus 10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45667777888888888888888888887765
No 286
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=64.38 E-value=13 Score=30.85 Aligned_cols=40 Identities=23% Similarity=0.105 Sum_probs=33.8
Q ss_pred hhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q psy3014 6 SLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH 45 (570)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 45 (570)
..++.+...+-+|..++.+++|.+|.+.+..|+...|.+.
T Consensus 9 ~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 9 STAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 4566788889999999999999999999999999888654
No 287
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=61.74 E-value=15 Score=25.29 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy3014 448 GWIRKGKILQGMQQQSKAIDAYEKAL 473 (570)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~al 473 (570)
.+-..+..+...|+|++|+++.+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34456667777777777776666554
No 288
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=59.96 E-value=15 Score=25.72 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=26.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
..+|..+...|+++.|+.+|-+|+...|.=...+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL 57 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 57 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 3478888888888888888888888888755444
No 289
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=59.87 E-value=13 Score=27.44 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=17.6
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAI 38 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 38 (570)
..+..+...|...-..|+|++|+.+|..++
T Consensus 16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 16 QKAIDLASKAAQEDKAGNYEEALQLYQHAV 45 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 445555566665556666666666665554
No 290
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=59.56 E-value=12 Score=25.12 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKL 40 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 40 (570)
......+|+.+...|+|+.|+.+|+.+++.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 445567788888888888888888888764
No 291
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=59.50 E-value=62 Score=25.41 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=39.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HH-----HH-HHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 381 AKERGNELFKNGKYADAVKEYTEAINRNPDD---PK-----YY-SNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 381 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~-----~~-~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
-+..|..++..|+|=+|-+.++.+-...+.. .. +. ...|..+.+.|+...|...+.+++.
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3556777778888888888888887766543 11 22 2233445566777777777777765
No 292
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=57.38 E-value=31 Score=28.54 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDI 281 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 281 (570)
.....-.+.+|.+++..++|.+|.+.+..|+...|...
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 35667778889999999999999999999988877653
No 293
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=54.34 E-value=1.1e+02 Score=30.77 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=23.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKI 308 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 308 (570)
...|......|++++|+.+|.- .|+|+.++.++.+++
T Consensus 447 ~~aA~~ae~~G~~~dAi~LY~L---------------------a~~~d~vl~lln~~L 483 (661)
T 2qx5_A 447 EQAARRADEDGRIYDSILLYQL---------------------AEEYDIVITLVNSLL 483 (661)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH---------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHH---------------------hcCHHHHHHHHHHHH
Confidence 4455666677777777665443 456777777666665
No 294
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=50.45 E-value=51 Score=31.34 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccC--CHHHHHHHHHHHHHHHHHHHHhcCCh--hhHHHHHHHHHHHHHCCCHH
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHR--TPEIRTLISEMEKKIKEEEKKAYIDP--VKAEEAKERGNELFKNGKYA 395 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 395 (570)
....+-.+|++.++...+...++..-.... ..+ ..| ......+.+|.+++..++|.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~--------------------~~p~~q~v~Y~YYlGr~~~~~~~y~ 237 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFN--------------------EYQLDQQIEYRYLLGRYYLLNSQVH 237 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGG--------------------GSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChh--------------------hCCccceEeeeHHHHHHHHHHccHH
Confidence 334556889999999988888865433211 100 122 34677888999999999999
Q ss_pred HHHHHHHHHHhc-CCCC
Q psy3014 396 DAVKEYTEAINR-NPDD 411 (570)
Q Consensus 396 ~A~~~~~~al~~-~p~~ 411 (570)
+|.+.+..|+.. .|..
T Consensus 238 ~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 238 NAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCCcc
Confidence 999999999998 7754
No 295
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=50.25 E-value=15 Score=37.15 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhccc
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEG 59 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 59 (570)
++.....|...+..|+|.-|.+..+.++..+|++..+...++.+|.++|
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4566677777777888888888888888888887777777777776665
No 296
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=49.44 E-value=35 Score=34.50 Aligned_cols=50 Identities=6% Similarity=0.005 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 446 LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
.......|...+..|+|.-|.+....++..+|+|..++..++.++.++|.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 34555677777788888888888888888888888888888888888886
No 297
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=48.26 E-value=1.6e+02 Score=26.61 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYF 341 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~ 341 (570)
+..+..+|..|.+.+++.+|..+|
T Consensus 136 p~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 136 PELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHH
Confidence 677888888898888888888887
No 298
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=47.71 E-value=24 Score=24.75 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=23.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDI 281 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 281 (570)
...+|..+...|+++.|+.+|-+|+...|.-.
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 35678888888888888888888877766543
No 299
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=46.40 E-value=1.6e+02 Score=26.22 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhc
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEK 70 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 70 (570)
.++.-..+-......|+|=+|-..|+.. +.=|.+.++|++|++.+..
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl--------------~~Ry~~~~~~~eAidlL~~ 58 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTI--------------ANRYVRSKSYEHAIELISQ 58 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHH--------------HHHHHHhcCHHHHHHHHHH
Confidence 3444444555556667776666666553 3345556677777766544
No 300
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=46.28 E-value=27 Score=23.48 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 416 SNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 416 ~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
..+|+=|...|+|+.|+.+|+.++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4566666777777777777776654
No 301
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=45.76 E-value=78 Score=28.58 Aligned_cols=64 Identities=11% Similarity=0.006 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q psy3014 376 VKAEEAKERGNELFKN--GKYADAVKEYTEAINR-----NPDDPKYYSNRAACYTKLAAFDLGLKDCETCL 439 (570)
Q Consensus 376 ~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 439 (570)
..|.++.++|.+--.. .....++..|.+++.. ...+.-.|..+|-.+++.+++.+|+..+-.+-
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 3445555555543321 1122245555555432 12233334444445555555555555444443
No 302
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.63 E-value=9.1 Score=27.92 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHhcC
Q psy3014 428 FDLGLKDCETCLKLD 442 (570)
Q Consensus 428 ~~~A~~~~~~al~~~ 442 (570)
+++|..+..++|.++
T Consensus 19 h~~AF~~Is~AL~~D 33 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTD 33 (116)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh
Confidence 444555555555443
No 303
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=43.97 E-value=51 Score=22.62 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVE 275 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 275 (570)
.+..+...|.-.-..|++++|+.+|..+++
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444555555566666666666665543
No 304
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=41.76 E-value=1.7e+02 Score=27.08 Aligned_cols=29 Identities=7% Similarity=0.084 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy3014 445 FLKGWIRKGKILQGMQQQSKAIDAYEKAL 473 (570)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al 473 (570)
+...|..+|-.+.+.+++.+|+..+-.+-
T Consensus 302 hvYPYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 302 HIYPYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccceeecchHHHHhhhHHHHHHHhhhhh
Confidence 44555566666666777777776666663
No 305
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=40.87 E-value=91 Score=21.80 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=34.6
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCH-H-----HHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 383 ERGNELFKNGKYADAVKEYTEAINRNPDDP-K-----YYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 383 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~-----~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
..|..++..|+|=+|-+.++.+-...|+.. . +....|..+...|+. |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 346667777888888888888877765421 1 222234444456666 7777777665
No 306
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=39.62 E-value=1.4e+02 Score=23.49 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHH------HHHHHHHHhcCHHHHHHHHHHHhh
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQN------NIAAVYFERKEYDQCIEQYIQKIE 309 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~------~la~~~~~~~~~~~A~~~~~~~l~ 309 (570)
...-+..|..++..|+|=+|-+.++.+-...+.. -..+. ..|..+.+.|+..-|...+.+++.
T Consensus 32 ~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 32 LRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344667788888899999999999888776554 22222 223345667888888888888764
No 307
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=38.37 E-value=60 Score=22.09 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVE 275 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 275 (570)
.+..+...|.-.-..|++++|+.+|..+++
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444555555555566655555555443
No 308
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=37.72 E-value=95 Score=21.21 Aligned_cols=28 Identities=36% Similarity=0.405 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 448 GWIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
....-|.-+++.++|.+|...|+++..+
T Consensus 55 ~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 55 SLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 3344445555566666666666665543
No 309
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=37.44 E-value=38 Score=27.46 Aligned_cols=40 Identities=8% Similarity=-0.085 Sum_probs=26.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy3014 452 KGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSI 491 (570)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 491 (570)
...++.+.|.+++|.+.+++.+.-+|++......|..+-.
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~ 162 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIIS 162 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3456788889999999999888888887777766665533
No 310
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.11 E-value=47 Score=24.25 Aligned_cols=45 Identities=11% Similarity=0.196 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCC
Q psy3014 25 NNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77 (570)
Q Consensus 25 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 77 (570)
..|++|..+..++|.++.. |.-.....-|.+++..+++++.+..+
T Consensus 17 ~~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhcccccc
Confidence 3466777777777766541 22222233344445555555555543
No 311
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.61 E-value=1.5e+02 Score=22.93 Aligned_cols=46 Identities=7% Similarity=-0.032 Sum_probs=23.7
Q ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy3014 397 AVKEYTEAINR--NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 397 A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 442 (570)
+...|.-.... ....+..|...|..+...|++.+|...|+..++..
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44444444432 23345555555555555555666655555555543
No 312
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=35.33 E-value=1e+02 Score=20.88 Aligned_cols=31 Identities=39% Similarity=0.404 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVE 275 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 275 (570)
..+..+...|...-..|++++|+.+|..+++
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455556666666667777777766666554
No 313
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=34.41 E-value=1.9e+02 Score=23.68 Aligned_cols=69 Identities=10% Similarity=-0.009 Sum_probs=37.4
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR--NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 442 (570)
.+|....+|...+..+ ..+...++...|.-.... ....+..|...|..+...|++.+|...|+..++..
T Consensus 75 ND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 75 NDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4555555666555544 123344555555555433 33345555556666666666666666666666543
No 314
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=34.32 E-value=1.4e+02 Score=27.62 Aligned_cols=32 Identities=6% Similarity=0.080 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 443 PKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 443 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
..+...|..+|-.+++.+++.+|+..+-.+-.
T Consensus 315 n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 315 DEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 34556677778888888888888887776644
No 315
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=32.94 E-value=2e+02 Score=23.53 Aligned_cols=83 Identities=10% Similarity=-0.047 Sum_probs=59.2
Q ss_pred HHHHHHhhc------ccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCCh
Q psy3014 302 EQYIQKIEN------RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDP 375 (570)
Q Consensus 302 ~~~~~~l~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 375 (570)
..+++++.. ..+++....+|...+..+ ..+...++...|.-..... +..
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~------------------------IG~ 112 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKG------------------------IGT 112 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHT------------------------SST
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCC------------------------CcH
Confidence 567777643 223333466666666654 2344667777777766532 667
Q ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q psy3014 376 VKAEEAKERGNELFKNGKYADAVKEYTEAINRNP 409 (570)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 409 (570)
..+..|...|..+...|++.+|...|+.+++..-
T Consensus 113 ~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 113 KLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 7888999999999999999999999999998754
No 316
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=32.59 E-value=62 Score=26.71 Aligned_cols=42 Identities=12% Similarity=-0.006 Sum_probs=31.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
-.++.+.|.|++|.+.+++.+.-+|++......|..+-.+-+
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 346678888888888888888887777777777776654443
No 317
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=32.37 E-value=2e+02 Score=26.02 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=27.4
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 407 (570)
.....-.|..+|..+++.+++.+|+..+..+-..
T Consensus 292 ~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 292 SDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp TTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 3445566788899999999999999999887543
No 318
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=31.48 E-value=96 Score=22.25 Aligned_cols=32 Identities=16% Similarity=-0.036 Sum_probs=23.9
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAI 38 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 38 (570)
...++..+...|....+.|+|++|...++++-
T Consensus 16 ~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~ 47 (105)
T 2e2a_A 16 YAGDARSKLLEALKAAENGDFAKADSLVVEAG 47 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34567777777888888888888888877763
No 319
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=31.01 E-value=76 Score=23.33 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKA 273 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~a 273 (570)
+..+...|.-.-..|+|++|+.+|..+
T Consensus 18 Ai~lv~~Ave~D~ag~y~eAl~lY~~A 44 (117)
T 2cpt_A 18 AIDLASKAAQEDKAGNYEEALQLYQHA 44 (117)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 333344444444444444444444443
No 320
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=30.85 E-value=1e+02 Score=22.04 Aligned_cols=32 Identities=9% Similarity=-0.018 Sum_probs=25.3
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAI 38 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 38 (570)
...++..+...|....+.|+|++|...++++-
T Consensus 14 ~aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 14 NSGQARSLAYAALKQAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45677788888888888888888888887764
No 321
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=36.94 E-value=10 Score=38.19 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=22.0
Q ss_pred chhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccC
Q psy3014 50 NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGR 94 (570)
Q Consensus 50 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 94 (570)
..|...+..|+|.-|.+.++.++..+|++..+...++.+|.++|.
T Consensus 466 ~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~ 510 (668)
T 2yhe_A 466 KQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGY 510 (668)
Confidence 344444444555555555555555555555555555555544443
No 322
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=29.98 E-value=1.5e+02 Score=23.06 Aligned_cols=88 Identities=8% Similarity=0.037 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--cchhhchhHHHhcccCHH-HHHHHHhchhccCCCChhHHhHHHHH
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN--HILFSNRSAAFAKEGNYE-KALEDAEKTISLKPDWPKGYSRKGSA 88 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~ 88 (570)
..-+..+...|-..+|.+.+..++.. +|.. ....+.+|..|....++. +-....-..+.+..+ -.+.+=++
T Consensus 9 q~a~i~a~~afl~~dYs~VI~~L~~~---~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSd---e~yL~YWI 82 (161)
T 2ynq_A 9 QEAYIQSTELFLQNKYSDVITTLEDY---APEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTD---EQYMLYWI 82 (161)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHTTS---CGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSC---HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcC---ChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCC---HHHHHHHH
Confidence 34456788889999999999888764 4443 467889999998876654 334444444443322 12334456
Q ss_pred HhhccCHHHHHHHHHHh
Q psy3014 89 LSYLGRYKESISTYEEG 105 (570)
Q Consensus 89 ~~~~g~~~~A~~~~~~a 105 (570)
|.-.|++++|+..-+..
T Consensus 83 yiGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 83 YIGRSQSEEALELARTI 99 (161)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred HHcCCchHHHHHHHHhc
Confidence 66679999999876654
No 323
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=29.11 E-value=2.9e+02 Score=25.67 Aligned_cols=33 Identities=6% Similarity=0.017 Sum_probs=26.1
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAIN 406 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 406 (570)
.......|..+|..+++.+++.+|+..+..+-.
T Consensus 314 ~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 314 RDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp TTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 344556677888899999999999998887754
No 324
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=28.51 E-value=1e+02 Score=22.92 Aligned_cols=16 Identities=13% Similarity=-0.114 Sum_probs=7.2
Q ss_pred HHHHhcChHHHHHHHH
Q psy3014 421 CYTKLAAFDLGLKDCE 436 (570)
Q Consensus 421 ~~~~~~~~~~A~~~~~ 436 (570)
+|+..++.+..+..++
T Consensus 49 lyf~~~n~~~m~~~L~ 64 (126)
T 2npu_A 49 LYFGERNVKGMFEVLE 64 (126)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHhcccCHHHHHHHHH
Confidence 3444444444444443
No 325
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=28.27 E-value=1.4e+02 Score=20.19 Aligned_cols=31 Identities=35% Similarity=0.419 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVE 275 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 275 (570)
..+..+...|.-.-+.|+|++|+.+|..+++
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455555666666667777777766666554
No 326
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=27.49 E-value=1.2e+02 Score=21.88 Aligned_cols=32 Identities=16% Similarity=-0.038 Sum_probs=24.9
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAI 38 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 38 (570)
...++..+...|....+.|+|++|.+.++++-
T Consensus 18 ~aG~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~ 49 (109)
T 3k1s_A 18 NSGNARSFAMEALQFAKQGKMAEADEAMVKAK 49 (109)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44567778888888888888888888887763
No 327
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=26.91 E-value=61 Score=26.34 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=17.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHH
Q psy3014 19 NAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAA 54 (570)
Q Consensus 19 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 54 (570)
.++++.|.|++|.+.+++....++++......|..+
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 345566666666666666666665555544444443
No 328
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=26.71 E-value=3.4e+02 Score=24.18 Aligned_cols=107 Identities=18% Similarity=0.084 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--------cch--hhchhHHHhc-----c-------cCHHHHHH--
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN--------HIL--FSNRSAAFAK-----E-------GNYEKALE-- 66 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~--~~~la~~~~~-----~-------g~~~~A~~-- 66 (570)
...-+..|..++..|++++|+..|+.+|..-|-. .++ +..++.-|.- + .+....++
T Consensus 114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELA 193 (325)
T 3mv2_A 114 VNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELA 193 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 4446778999999999999999999998764321 011 1111111110 0 11111111
Q ss_pred HHhchhccCCCCh-hHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHH
Q psy3014 67 DAEKTISLKPDWP-KGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKE 117 (570)
Q Consensus 67 ~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 117 (570)
.|=...++.|.+. -++..--...++.++|..|..+-++.+++.|....+..
T Consensus 194 AYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~q 245 (325)
T 3mv2_A 194 AYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQ 245 (325)
T ss_dssp HHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHH
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 1111123333322 22222334567889999999999999999997665544
No 329
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=25.63 E-value=1.4e+02 Score=22.08 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=18.4
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEA 37 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 37 (570)
.-++..+...|....+.|+|++|.+.++++
T Consensus 34 aG~ARS~~~eAl~~Ak~gdfe~A~~~l~eA 63 (120)
T 3l8r_A 34 SGNARSIVHEAFDAMREKNYILAEQKLQEA 63 (120)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555666666666666666666666655
No 330
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.17 E-value=4.1e+02 Score=24.52 Aligned_cols=93 Identities=11% Similarity=0.076 Sum_probs=64.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcC-------C----------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-----c
Q psy3014 254 GNEAYKKKNFEEALAHYNKAVEFD-------P----------TDITFQNNIAAVYFERKEYDQCIEQYIQKIEN-----R 311 (570)
Q Consensus 254 a~~~~~~~~~~~A~~~~~~al~~~-------p----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~ 311 (570)
..+.....+.++|++++++..... + ....+...++..|...|+.++|...++++-.. +
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 344556789999999998764321 0 11345677888999999999999999888632 1
Q ss_pred cChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
.+.......+...+..+...+++..+....-..+.
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 22223355666677888888998887766655554
No 331
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=24.79 E-value=1.9e+02 Score=20.55 Aligned_cols=84 Identities=18% Similarity=0.060 Sum_probs=54.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCH
Q psy3014 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRY 95 (570)
Q Consensus 16 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 95 (570)
.+|..--.....++|..+-+ .+...+....+-.-+...++..|+|++|....+..- .++.--.+|.+-.+.|--
T Consensus 11 E~AL~gTG~H~HqEA~tIAd-wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~ 84 (115)
T 2uwj_G 11 ELALAGSGQHCHEEALCIAE-WLERLGQDEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLGLG 84 (115)
T ss_dssp HHHHHHHTTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTTCH
T ss_pred HHHHHHccchHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccH
Confidence 34444444556677765544 345555533344455677889999999998876643 444555567788889998
Q ss_pred HHHHHHHHHh
Q psy3014 96 KESISTYEEG 105 (570)
Q Consensus 96 ~~A~~~~~~a 105 (570)
+++...+.+.
T Consensus 85 s~le~rL~~l 94 (115)
T 2uwj_G 85 AALDRRLAGL 94 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887433
No 332
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=24.48 E-value=2.5e+02 Score=21.77 Aligned_cols=50 Identities=10% Similarity=-0.064 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 429 DLGLKDCETCLKL--DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 429 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
+.+...|.-.... ....+..|...|..+...|++.+|.+.|+.+++....
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 4477777776654 4567788888999999999999999999999987643
No 333
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=24.38 E-value=1.9e+02 Score=20.53 Aligned_cols=84 Identities=17% Similarity=0.096 Sum_probs=54.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCH
Q psy3014 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRY 95 (570)
Q Consensus 16 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 95 (570)
.+|..--.....++|..+-+ .+...+....+-.-+...++..|+|++|....+..- .++.--.+|.+-.+.|--
T Consensus 12 E~AL~gTG~H~HqEA~tIAd-wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~ 85 (116)
T 2p58_C 12 EIALIGTGNHYHEEANCIAE-WLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLG 85 (116)
T ss_dssp HHHHHHHTTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCH
T ss_pred HHHHHHccchHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccH
Confidence 34444444556777765544 345555533344455677889999999999887654 344445567777888988
Q ss_pred HHHHHHHHHh
Q psy3014 96 KESISTYEEG 105 (570)
Q Consensus 96 ~~A~~~~~~a 105 (570)
+++...+.+.
T Consensus 86 s~le~rL~~l 95 (116)
T 2p58_C 86 SALESRLNRL 95 (116)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877433
No 334
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=24.23 E-value=1.8e+02 Score=20.15 Aligned_cols=26 Identities=8% Similarity=0.190 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 321 LQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 321 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
+...|.-.-..|++++|+.+|..+++
T Consensus 18 lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 18 VLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444445566777777777777665
No 335
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=23.57 E-value=70 Score=22.04 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=10.1
Q ss_pred CHHHHHHHHHHHHccCC
Q psy3014 26 NFIEAIEAYSEAIKLDG 42 (570)
Q Consensus 26 ~~~~A~~~~~~al~~~p 42 (570)
.|++|..+..++|..+.
T Consensus 12 ~h~~AF~~Is~aL~~DE 28 (89)
T 3eab_A 12 FHKQAFEYISIALRIDE 28 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 45666666666665543
No 336
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=22.29 E-value=1.7e+02 Score=20.93 Aligned_cols=32 Identities=16% Similarity=0.004 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAV 274 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 274 (570)
...++.....-|.-..+.|+|++|.+.++++-
T Consensus 16 ~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~ 47 (105)
T 2e2a_A 16 YAGDARSKLLEALKAAENGDFAKADSLVVEAG 47 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45667777777888888888888888887764
No 337
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.14 E-value=3.4e+02 Score=22.50 Aligned_cols=42 Identities=26% Similarity=0.322 Sum_probs=30.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy3014 254 GNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK 295 (570)
Q Consensus 254 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 295 (570)
..++++.|.|++|.+.+++....+|.+......|..+-.+.+
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 455678899999999999998887777666666665544443
No 338
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=21.98 E-value=6.1e+02 Score=25.44 Aligned_cols=25 Identities=0% Similarity=-0.008 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKS 344 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~ 344 (570)
+....|.-....|++++|+..|.-+
T Consensus 445 i~~~aA~~ae~~G~~~dAi~LY~La 469 (661)
T 2qx5_A 445 ITEQAARRADEDGRIYDSILLYQLA 469 (661)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 3345566777788888888777655
No 339
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=21.73 E-value=1.8e+02 Score=20.73 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAV 274 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 274 (570)
...++.....-+.-..+.|+|++|.+.++++-
T Consensus 14 ~aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 14 NSGQARSLAYAALKQAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44667777777888888888888888887764
No 340
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=21.44 E-value=1.3e+02 Score=19.03 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=12.1
Q ss_pred hcCHHHHHHHHHhhcCHHHHHHhh
Q psy3014 514 LRDPAMRLILEQMQNDPRALSDHL 537 (570)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~ 537 (570)
..+|.+..+-+.+..+|..+..++
T Consensus 8 r~~Pqf~~lR~~vq~NP~~L~~lL 31 (61)
T 2f4m_B 8 RNQPQFQQMRQIIQQNPSLLPALL 31 (61)
T ss_dssp TTCHHHHHHHHHHHHCGGGHHHHH
T ss_pred HcChHHHHHHHHHHHCHHHHHHHH
Confidence 344555555555555555555443
No 341
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=20.74 E-value=1.4e+02 Score=22.97 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=23.0
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAI 38 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 38 (570)
-..+..++..|..|...|+.+.|--.|-+.+
T Consensus 37 lrta~~llr~A~~y~~egd~e~AYily~R~~ 67 (146)
T 2xze_A 37 FRSGVEIIRMASIYSEEGNIEHAFILYNKYI 67 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3456777788888888888888887777743
No 342
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=20.67 E-value=72 Score=17.26 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHccC
Q psy3014 26 NFIEAIEAYSEAIKLD 41 (570)
Q Consensus 26 ~~~~A~~~~~~al~~~ 41 (570)
-|++|+..|+.+++..
T Consensus 17 ayDKAVaSfk~alk~~ 32 (37)
T 3s6n_M 17 AYDKAVASFKHALKNG 32 (37)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4889999999888754
No 343
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=20.43 E-value=2.4e+02 Score=20.09 Aligned_cols=75 Identities=7% Similarity=-0.130 Sum_probs=38.6
Q ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q psy3014 389 FKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDA 468 (570)
Q Consensus 389 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (570)
......++|..+-+ .+...+....+-..+...+...|+|++|....+..- .|+.--.++.+-.+.|--.++...
T Consensus 18 TG~H~HqEA~tIAd-wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~r 91 (116)
T 2p58_C 18 TGNHYHEEANCIAE-WLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGSALESR 91 (116)
T ss_dssp HTTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHHHHHHH
T ss_pred ccchHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHH
Confidence 33445555544332 334444433334445555666777777766554321 333444455566666666666655
Q ss_pred H
Q psy3014 469 Y 469 (570)
Q Consensus 469 ~ 469 (570)
+
T Consensus 92 L 92 (116)
T 2p58_C 92 L 92 (116)
T ss_dssp H
T ss_pred H
Confidence 5
No 344
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=20.22 E-value=2.4e+02 Score=20.05 Aligned_cols=75 Identities=8% Similarity=-0.140 Sum_probs=43.2
Q ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q psy3014 389 FKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDA 468 (570)
Q Consensus 389 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (570)
......++|..+-+ .+...+....+-..+...+...|+|++|....+.. + .|+.--.++.+-.+.|--.++...
T Consensus 17 TG~H~HqEA~tIAd-wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c-~pdlepw~ALce~rlGl~s~le~r 90 (115)
T 2uwj_G 17 SGQHCHEEALCIAE-WLERLGQDEAARLIRISSLANQGRYQEALAFAHGN----P-WPALEPWFALCEWHLGLGAALDRR 90 (115)
T ss_dssp HTTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTC----C-CGGGHHHHHHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCC----C-CchHHHHHHHHHHhcccHHHHHHH
Confidence 34445566654333 34444543334445566677778888776654432 1 444445566777777777777766
Q ss_pred H
Q psy3014 469 Y 469 (570)
Q Consensus 469 ~ 469 (570)
+
T Consensus 91 L 91 (115)
T 2uwj_G 91 L 91 (115)
T ss_dssp H
T ss_pred H
Confidence 6
No 345
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=25.01 E-value=23 Score=35.79 Aligned_cols=49 Identities=8% Similarity=-0.030 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCH
Q psy3014 449 WIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 497 (570)
....|.-.+..|+|.-|.+....++..+|+|.+++..++.++.++|...
T Consensus 464 ~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~ 512 (668)
T 2yhe_A 464 VLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQT 512 (668)
Confidence 3445555666777777777777777777777777777777777777633
Done!