RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3014
(570 letters)
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 285 bits (731), Expect = 7e-90
Identities = 83/523 (15%), Positives = 186/523 (35%), Gaps = 38/523 (7%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LKDKGN + + +AI+ Y+ A++L + + +SN SA + G+ +K +E + K +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEE-GLKLDPNNEQMKEAIKDVRNQEMNDMNR 132
LKPD+ K R+ SA LG++ +++ L D N+ ++ ++ N++ +
Sbjct: 68 LKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLK 127
Query: 133 G--DPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTT 190
+ P R + PS M +T D
Sbjct: 128 EKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEAD 187
Query: 191 LSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKE 250
++ G++ ++ D + ++ + +++ +++ A
Sbjct: 188 KELMNGLSNLYKRSPESYDKADESFTKAARLF-------EEQLDKNNEDEKLKEKLAISL 240
Query: 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN 310
+ G + K + A KA+E P + +A + +R + + + + ++
Sbjct: 241 EHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALKL 299
Query: 311 RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS--------MSEHRTPEIRTLISEMEK 362
++ + G ++++ A F+K+ + + ++ +
Sbjct: 300 DSNN---SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDD 356
Query: 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422
+ P E L + A+K+Y AI Y A
Sbjct: 357 CETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416
Query: 423 TKLAA---------FDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKAL 473
K F E KLDP+ + I ++ + +AI +E++
Sbjct: 417 GKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476
Query: 474 ELDASNAEAVEGYRQCSIAVSSNPEEVRKRAMGDPEVQQILRD 516
+L + E ++ +V++R DP + + +++
Sbjct: 477 DLARTMEEKLQAITFA------EAAKVQQRIRSDPVLAKKIQE 513
Score = 100 bits (252), Expect = 9e-23
Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 41/272 (15%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
A K+ GN+ ++ K +++A+ +YN A+E D F +N++A Y + + +E +
Sbjct: 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTK 64
Query: 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNA------------------KVYFEKSMSEH 348
+E + D+ +K L R + + + + +A + E+++++
Sbjct: 65 ALELKPDY---SKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQ 121
Query: 349 RTPEIRTLISEMEK------KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402
+++ +++ ++ + K D + + F K Y
Sbjct: 122 AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYD 181
Query: 403 EAINRNPDDPKYYSNRA-----------ACYTK-LAAFDLGLKDCETCLKLDPKFLKGWI 450
E+ + + SN +TK F+ L KL K
Sbjct: 182 ESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241
Query: 451 RKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
G A + +KA+EL +
Sbjct: 242 HTGIFKFLKNDPLGAHEDIKKAIELF-PRVNS 272
Score = 97.9 bits (244), Expect = 9e-22
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKD 434
A K++GN+ F+N KY DA+K Y A+ DP +YSN +ACY + ++
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEM 61
Query: 435 CETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEK-ALELDASNAEAVEGY 486
L+L P + K +R+ +G+ + + A+ +L D ++A
Sbjct: 62 STKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 240 bits (615), Expect = 6e-76
Identities = 98/240 (40%), Positives = 143/240 (59%), Gaps = 5/240 (2%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
A KEK GN+ YK + F+EA+ HYNKA E DIT+ NN AA +E+ EY+ I
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLND 63
Query: 307 KIE----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362
+E RAD+K+I+K+ RIGN Y K+ D K Y++KS++EHRT +I T + EK
Sbjct: 64 AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEK 123
Query: 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422
++K+ E +AY++P KAEEA+ G E F + +AVK YTE I R P+D + YSNRAA
Sbjct: 124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAAL 183
Query: 423 TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
KL +F + DC ++ DP F++ +IRK +++ + A++ + A DA
Sbjct: 184 AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 243
Score = 106 bits (266), Expect = 6e-26
Identities = 26/100 (26%), Positives = 49/100 (49%)
Query: 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL 74
+ +G +++ A++AY+E IK + +SNR+AA AK ++ +A+ D K I
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202
Query: 75 KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
P++ + Y RK +A + Y ++ T + D
Sbjct: 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN 242
Score = 91.5 bits (228), Expect = 6e-21
Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Query: 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKD 434
A++ K GN+ +K ++ +A++ Y +A + D Y +NRAA + ++ +
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAIST 60
Query: 435 CETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
++ + + K + + +K +E +
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108
Score = 90.3 bits (225), Expect = 2e-20
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
K +GN +A F EAIE Y++A +L + +NR+AA ++G YE A+ +
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVE 66
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNE 113
+ Y + + +G + ++ ++ +
Sbjct: 67 QGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL 106
Score = 79.9 bits (198), Expect = 5e-17
Identities = 15/96 (15%), Positives = 40/96 (41%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ + N + ++ ++ + + ++ A++ + I P
Sbjct: 111 TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 170
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ +GYS + +AL+ L + E+I+ + ++ DPN
Sbjct: 171 EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206
Score = 78.4 bits (194), Expect = 2e-16
Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 15/121 (12%)
Query: 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL 74
K + + N + + I+ + + K N EK L+ AE +
Sbjct: 76 KVISKSFARIGNAYHKLGDLKKTIEYY-QKSLTEHRTADILTKLRNAEKELKKAEAEAYV 134
Query: 75 KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIK 120
P+ + +G + ++ Y E +K P + EAI
Sbjct: 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA 194
Query: 121 D 121
D
Sbjct: 195 D 195
Score = 66.4 bits (163), Expect = 2e-12
Identities = 16/80 (20%), Positives = 30/80 (37%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ A + +F EAI ++AI+ D + ++ A Y ALE + +
Sbjct: 179 RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238
Query: 77 DWPKGYSRKGSALSYLGRYK 96
+ G S + Y +
Sbjct: 239 EVNNGSSAREIDQLYYKASQ 258
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 212 bits (541), Expect = 7e-62
Identities = 89/487 (18%), Positives = 163/487 (33%), Gaps = 68/487 (13%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK++GN A NF EAI+ Y AI+LD + +SN SA + G+ EK +E K +
Sbjct: 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRG 133
+KPD K R+ SA LG + +++ + E + + +N
Sbjct: 88 IKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPML---ERNLNKQAMK 144
Query: 134 DPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKD--PRMMTTL 191
NL D Q+ S+ S + + L
Sbjct: 145 VLNENLSKDEGRGSQV--------LPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL 196
Query: 192 SVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEK 251
S L S+T + + + +A
Sbjct: 197 SDALQRLYSATDEGYLVANDLLTKSTDMYHSL---------LSANTVDDPLRENAALALC 247
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
G + K N +A +++ PT ++ +A +++ + + + + ++
Sbjct: 248 YTGIFHFLKNNLLDAQVLLQESINLHPTPNSY-IFLALTLADKENSQEFFKFFQKAVDLN 306
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
++ G Y ++D+KNAK F+K+ + E
Sbjct: 307 PEY---PPTYYHRGQMYFILQDYKNAKEDFQKAQ-----------------SLNPENVYP 346
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
YI L+K GK+ ++ + E + P P+ + A T FD
Sbjct: 347 YIQ---------LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQ----------------GMQQQSKAIDAYEKALEL 475
+K + +L+ K + G ++ ++ + AI KA EL
Sbjct: 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457
Query: 476 DASNAEA 482
D + +A
Sbjct: 458 DPRSEQA 464
Score = 110 bits (276), Expect = 9e-26
Identities = 45/263 (17%), Positives = 80/263 (30%), Gaps = 26/263 (9%)
Query: 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCI 301
Q A + K GN + KNF EA+ +Y A+E DP + F +NI+A Y + ++ I
Sbjct: 20 QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVI 79
Query: 302 EQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEI-------R 354
E + +E + D +KAL R + + + ++ +A R
Sbjct: 80 EFTTKALEIKPDH---SKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER 136
Query: 355 TLISEMEKKIKEEEKKAY-------IDPVKAEEAKE------RGNELFKNGKYADAVKEY 401
L + K + E K + + + Y A
Sbjct: 137 NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL 196
Query: 402 TEAINRNPD--DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM 459
++A+ R D Y + L L G
Sbjct: 197 SDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256
Query: 460 QQQSKAIDAYEKALELDASNAEA 482
A ++++ L +
Sbjct: 257 NNLLDAQVLLQESINLH-PTPNS 278
Score = 96.7 bits (241), Expect = 2e-21
Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Query: 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422
+ +++AY A + K RGN F + +A+K Y AI +P++P +YSN +ACY
Sbjct: 15 GLSPSQRQAY-----AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACY 69
Query: 423 TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ ++ L++ P K +R+ + + + A+ + +
Sbjct: 70 ISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGAS 129
Query: 483 VEGY 486
+E
Sbjct: 130 IEPM 133
Score = 76.7 bits (189), Expect = 6e-15
Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 16/119 (13%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKE----------------GN 60
+F AI+ Y A +L+ + K
Sbjct: 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443
Query: 61 YEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAI 119
+ A++ K L P + + + E+I +E+ L ++ +A
Sbjct: 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502
Score = 67.1 bits (164), Expect = 7e-12
Identities = 34/286 (11%), Positives = 72/286 (25%), Gaps = 49/286 (17%)
Query: 262 NFEEALAHYNKAVEFDPTDITFQ----NNIAAVYFERKEYDQCIEQYIQKIENRADFKLI 317
+ + P+ N +F K +++ I+ Y IE +
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE--- 58
Query: 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVK 377
I CY D + + K++ +IK + KA +
Sbjct: 59 PVFYSNISACYISTGDLEKVIEFTTKAL-----------------EIKPDHSKALLR--- 98
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
R + G + DA+ + + + + + +K
Sbjct: 99 ------RASANESLGNFTDAMFDLSVLSL----NGDFDGASIEPMLERNLNKQAMKVLNE 148
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA--VEGYRQCSIAVSS 495
L D R ++L + ++ LE+ + N + Y S A+
Sbjct: 149 NLSKDEG------RGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQR 202
Query: 496 NPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPE 541
V L + + + +
Sbjct: 203 LY----SATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL 244
Score = 63.6 bits (155), Expect = 7e-11
Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 392 GKYADAVKEYTEAINRNPDDPKYYS----NRAACYTKLAAFDLGLKDCETCLKLDPKFLK 447
G + + + + +P + Y+ NR + F+ +K + ++LDP
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 448 GWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ K I+ KALE+ +++A
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA 95
Score = 52.8 bits (127), Expect = 2e-07
Identities = 20/186 (10%), Positives = 45/186 (24%), Gaps = 54/186 (29%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAV----------------YFERKE 296
+ +F+ A+ Y+ A + I + + ++
Sbjct: 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443
Query: 297 YDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTL 356
++ I+ + E +A + +ME A FE S
Sbjct: 444 FNAAIKLLTKACELDPRS---EQAKIGLAQLKLQMEKIDEAIELFEDSAI---------- 490
Query: 357 ISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYS 416
+ E + +A+A + + + +P
Sbjct: 491 ----------------LARTMDE--------KLQATTFAEA-AKIQKRLRADPIISAKME 525
Query: 417 NRAACY 422
A Y
Sbjct: 526 LTLARY 531
Score = 37.0 bits (86), Expect = 0.014
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
LQ EAIE + ++ L T + FA+ +K L +
Sbjct: 468 LAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT--FAEAAKIQKRLRADPIISAKME 525
Query: 77 DWPKGYSRKG 86
Y KG
Sbjct: 526 LTLARYRAKG 535
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 170 bits (432), Expect = 6e-51
Identities = 64/123 (52%), Positives = 83/123 (67%)
Query: 367 EEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA 426
+ AYI+P A+E K +GNE FK G Y A++ Y EA+ R+P++ YSNRAAC TKL
Sbjct: 2 NARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLM 61
Query: 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486
F L DC+TC++LD KF+KG+IRK L M++ SKA AYE AL++D SN EA EG
Sbjct: 62 EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
Query: 487 RQC 489
R C
Sbjct: 122 RNC 124
Score = 144 bits (366), Expect = 2e-41
Identities = 37/110 (33%), Positives = 66/110 (60%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
K+KGN + ++ A+ Y+EA+K D N IL+SNR+A K +++AL+D + I
Sbjct: 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR 75
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123
L + KGY RK + L + + ++ YE+ L++DP+NE+ +E +++
Sbjct: 76 LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125
Score = 78.0 bits (193), Expect = 1e-17
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
A++EK GNE +KK ++ A+ HYN+AV+ DP + +N AA + E+ + ++
Sbjct: 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS-EHRTPEIRTLISEMEK 362
I + F K R C M +W A+ +E ++ + E R + +
Sbjct: 73 CIRLDSKF---IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 169 bits (431), Expect = 1e-50
Identities = 65/128 (50%), Positives = 88/128 (68%)
Query: 365 KEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK 424
++++P A K +GNE F+ G Y A+K YTEAI RNP D K YSNRAACYTK
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62
Query: 425 LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484
L F L LKDCE C++L+P F+KG+ RK L+ M+ +KA+D Y+KAL+LD+S EA +
Sbjct: 63 LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD 122
Query: 485 GYRQCSIA 492
GY++C +A
Sbjct: 123 GYQRCMMA 130
Score = 142 bits (360), Expect = 2e-40
Identities = 37/115 (32%), Positives = 70/115 (60%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+K+KGN Q ++ +A++ Y+EAIK + + L+SNR+A + K ++ AL+D E+ I
Sbjct: 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ 78
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMN 128
L+P + KGY+RK +AL + Y +++ Y++ L LD + ++ + + + N
Sbjct: 79 LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133
Score = 76.9 bits (190), Expect = 4e-17
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
A K GNE ++K ++ +A+ HY +A++ +P D +N AA Y + E+ ++ +
Sbjct: 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75
Query: 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEK 343
I+ F K R + M+D+ A ++K
Sbjct: 76 CIQLEPTF---IKGYTRKAAALEAMKDYTKAMDVYQK 109
Score = 28.7 bits (65), Expect = 2.0
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 14/70 (20%)
Query: 66 EDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN------------- 112
+ PD KG+ G Y +++ Y E +K +P +
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62
Query: 113 -EQMKEAIKD 121
+ + A+KD
Sbjct: 63 LLEFQLALKD 72
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 163 bits (414), Expect = 9e-48
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 11/176 (6%)
Query: 367 EEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA 426
+E A +AEE K + N+ FK Y +A+K Y++AI NP + YY NR+ Y +
Sbjct: 2 DEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE 61
Query: 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486
+ L D ++LD K++KG+ R+ + + A+ YE +++ + +A Y
Sbjct: 62 CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 121
Query: 487 RQCSIAVSSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEI 542
++C+ + V+++A + I D R +++ + + + D P++
Sbjct: 122 QECN-------KIVKQKAFE----RAIAGDEHKRSVVDSLDIESMTIEDEYSGPKL 166
Score = 137 bits (348), Expect = 2e-38
Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 1/140 (0%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK + N +A ++ AI+ YS+AI+L+ +N I + NRS A+ + Y AL DA + I
Sbjct: 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 75
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRG 133
L + KGY R+ ++ LG+++ ++ YE +K+ P+++ K ++ N+ +
Sbjct: 76 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC-NKIVKQKAFE 134
Query: 134 DPFANLFSDPNIFVQLQLDP 153
A ++ L ++
Sbjct: 135 RAIAGDEHKRSVVDSLDIES 154
Score = 85.1 bits (211), Expect = 1e-19
Identities = 24/147 (16%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
Query: 236 EDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK 295
++ + A++ K N+ +K K++E A+ Y++A+E +P++ + N + Y +
Sbjct: 2 DEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE 61
Query: 296 EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS-EHRTPEIR 354
Y + + IE + K R + ++ A +E + + + +
Sbjct: 62 CYGYALGDATRAIELDKKY---IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK 118
Query: 355 TLISEMEKKIKEEEKKAYIDPVKAEEA 381
E K +K++ + I + + +
Sbjct: 119 MKYQECNKIVKQKAFERAIAGDEHKRS 145
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 166 bits (421), Expect = 2e-47
Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 3/176 (1%)
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCE 436
A+E KE+GN LF KY +A Y AI RNP YY+NRA CY K+ + L DC
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 437 TCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAV--- 493
L+LD + +K G+ M+ +AI ++A L ++ +
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122
Query: 494 SSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIASKIQKL 549
+R + E+ L +++ R H + I ++ +
Sbjct: 123 KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACI 178
Score = 118 bits (296), Expect = 7e-30
Identities = 28/210 (13%), Positives = 69/210 (32%), Gaps = 19/210 (9%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK++GN + EA Y AI + + ++NR+ + K E+AL D + +
Sbjct: 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN-----EQMKEAIKDVRNQEMN 128
L K + G + Y E+I+ + L + + A++ + + N
Sbjct: 67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 126
Query: 129 DMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMM 188
+ ++ + +L+ + +E+++ D +
Sbjct: 127 SIEE--------------RRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIR 172
Query: 189 TTLSVLLGVNMSSTMGDGDAEEMDVDPQPP 218
+ + + + + +
Sbjct: 173 AQQACIEAKHDKYMADMDELFSQVDEKRKK 202
Score = 93.4 bits (232), Expect = 2e-21
Identities = 34/200 (17%), Positives = 76/200 (38%), Gaps = 6/200 (3%)
Query: 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYI 305
SA++ KE GN + + + EA A Y +A+ +P + N A Y + ++ +Q +
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 306 QKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS-EHRTPEIRTLISEMEKKI 364
+ +E KA +G C +ME + A +++ S +I
Sbjct: 63 RALELDGQS---VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119
Query: 365 KEEEKKAYIDPVKAEEAKERGNEL--FKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422
++++ I+ + + E + L + ++E + DD + +A
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIE 179
Query: 423 TKLAAFDLGLKDCETCLKLD 442
K + + + + +
Sbjct: 180 AKHDKYMADMDELFSQVDEK 199
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 156 bits (397), Expect = 6e-46
Identities = 65/116 (56%), Positives = 90/116 (77%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V+ LK+KGN AL N +A++ YSEAIKLD NH+L+SNRSAA+AK+G+Y+KA ED
Sbjct: 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125
KT+ LKPDW KGYSRK +AL +L R++E+ TYEEGLK + NN Q+KE ++++ +
Sbjct: 63 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 118
Score = 151 bits (385), Expect = 4e-44
Identities = 36/113 (31%), Positives = 60/113 (53%)
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCE 436
+ E KE+GN+ G DA++ Y+EAI +P + YSNR+A Y K + +D
Sbjct: 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 437 TCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
+ L P + KG+ RK L+ + + +A YE+ L+ +A+N + EG +
Sbjct: 63 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
Score = 78.4 bits (194), Expect = 1e-17
Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
+ KE GN+A N ++AL Y++A++ DP + +N +A Y ++ +Y + E +
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS-EHRTPEIRTLISEMEKK 363
++ + D+ K R + + ++ AK +E+ + E P+++ + ME +
Sbjct: 64 TVDLKPDW---GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 118
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 149 bits (377), Expect = 9e-43
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 3/132 (2%)
Query: 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP---DDPKYYSNRAACY 422
E + A E+ ++ GNELFK G Y A+ YT+A+ + D + NRAAC+
Sbjct: 16 PEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACH 75
Query: 423 TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
KL +D + ++ D +K R+ + L+ + + +A+ ++ + L+ N
Sbjct: 76 LKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135
Query: 483 VEGYRQCSIAVS 494
E R S S
Sbjct: 136 QEALRNISGPSS 147
Score = 128 bits (323), Expect = 4e-35
Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGT---NHILFSNRSAAFAKEGNYEKALEDAEK 70
L+ +GN + ++ A+ AY++A+ LD T +L NR+A K +Y+KA +A K
Sbjct: 31 LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASK 90
Query: 71 TISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123
I K R+ AL LGR +++ + + L+P N+ +EA++++
Sbjct: 91 AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143
Score = 83.2 bits (206), Expect = 5e-19
Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 7/146 (4%)
Query: 223 APSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT--- 279
S P PE + T S ++ ++ GNE +K ++ ALA Y +A+ D T
Sbjct: 4 GSSGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD 63
Query: 280 DITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKV 339
N AA + + ++YD+ + + IE KAL R +K+ A +
Sbjct: 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD---VKALYRRSQALEKLGRLDQAVL 120
Query: 340 YFEKSMS-EHRTPEIRTLISEMEKKI 364
++ +S E + + + +
Sbjct: 121 DLQRCVSLEPKNKVFQEALRNISGPS 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 147 bits (374), Expect = 2e-42
Identities = 42/125 (33%), Positives = 63/125 (50%)
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
D +AE K GNE K + AV Y +AI NP + Y+ NRAA Y+KL + +
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIA 492
+DCE + +DP + K + R G L + + +A+ Y+KALELD N + +
Sbjct: 67 QDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126
Query: 493 VSSNP 497
+ P
Sbjct: 127 LREAP 131
Score = 143 bits (362), Expect = 9e-41
Identities = 44/112 (39%), Positives = 71/112 (63%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK +GN ++ NF A+ Y +AI+L+ N + F NR+AA++K GNY A++D E+ I
Sbjct: 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125
+ P + K Y R G ALS L ++ E+++ Y++ L+LDP+NE K +K +
Sbjct: 75 IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126
Score = 80.0 bits (198), Expect = 4e-18
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 10/135 (7%)
Query: 233 AEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYF 292
ED A++ K GNE K +NFE A+ Y KA+E +P + + N AA Y
Sbjct: 4 GSEEDSAE------AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYS 57
Query: 293 ERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS-EHRTP 351
+ Y ++ + I + +KA R+G + A Y++K++ +
Sbjct: 58 KLGNYAGAVQDCERAICIDPAY---SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114
Query: 352 EIRTLISEMEKKIKE 366
++ + E K++E
Sbjct: 115 TYKSNLKIAELKLRE 129
Score = 43.7 bits (104), Expect = 2e-05
Identities = 28/154 (18%), Positives = 47/154 (30%), Gaps = 29/154 (18%)
Query: 272 KAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKM 331
E D + + + ++ + Y + IE A Y K+
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---AVYFCNRAAAYSKL 59
Query: 332 EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKN 391
++ A E+++ I KAY G L
Sbjct: 60 GNYAGAVQDCERAI-----------------CIDPAYSKAYGR---------MGLALSSL 93
Query: 392 GKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
K+ +AV Y +A+ +PD+ Y SN KL
Sbjct: 94 NKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 147 bits (373), Expect = 2e-42
Identities = 38/111 (34%), Positives = 54/111 (48%)
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
++ A+E KE+GN LF KY +A Y AI RNP YY+NRA CY K+ +
Sbjct: 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 62
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L DC L+LD + +K G+ M+ +AI ++A L
Sbjct: 63 LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 113
Score = 125 bits (316), Expect = 3e-34
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK++GN + EA Y AI + + ++NR+ + K E+AL D + +
Sbjct: 12 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 71
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN-EQMKEAIK 120
L K + G + Y E+I+ + L + I
Sbjct: 72 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 119
Score = 81.2 bits (201), Expect = 2e-18
Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIE 302
+ SA++ KE GN + + + EA A Y +A+ +P + N A Y + ++ +Q +
Sbjct: 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALA 64
Query: 303 QYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS------EHRTPEIRTL 356
+ +E KA +G C +ME + A +++ S + +I +
Sbjct: 65 DCRRALELDGQS---VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 121
Query: 357 ISEMEKKIKEEEKKA 371
+ +KK ++
Sbjct: 122 LRIAKKKRWNSIEER 136
Score = 27.7 bits (62), Expect = 5.1
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEK 70
G L+ ++ EAI A L + F + + + ++ E+
Sbjct: 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEER 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 146 bits (371), Expect = 3e-42
Identities = 39/107 (36%), Positives = 59/107 (55%)
Query: 376 VKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDC 435
+KAEEA+ G E F + +AVK YTE I R P+D + YSNRAA KL +F + DC
Sbjct: 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61
Query: 436 ETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
++ DP F++ +IRK +++ + A++ + A DA
Sbjct: 62 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108
Score = 125 bits (316), Expect = 2e-34
Identities = 27/105 (25%), Positives = 50/105 (47%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ +G +++ A++AY+E IK + +SNR+AA AK ++ +A+ D K I
Sbjct: 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEA 118
P++ + Y RK +A + Y ++ T + D A
Sbjct: 67 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 111
Score = 81.6 bits (202), Expect = 8e-19
Identities = 19/127 (14%), Positives = 53/127 (41%), Gaps = 3/127 (2%)
Query: 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYI 305
A++ + G E + K ++ A+ Y + ++ P D +N AA + + + I
Sbjct: 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62
Query: 306 QKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365
+ IE +F +A R ++++ +A + + ++ + E+++
Sbjct: 63 KAIEKDPNF---VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 119
Query: 366 EEEKKAY 372
+ ++ +
Sbjct: 120 KASQQRF 126
Score = 41.1 bits (97), Expect = 1e-04
Identities = 15/67 (22%), Positives = 27/67 (40%)
Query: 20 AALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWP 79
A + +F EAI ++AI+ D + ++ A Y ALE + + +
Sbjct: 47 ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 106
Query: 80 KGYSRKG 86
G S +
Sbjct: 107 NGSSARE 113
Score = 28.0 bits (63), Expect = 3.5
Identities = 8/47 (17%), Positives = 14/47 (29%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEK 63
K A + + A+E A D + S R ++
Sbjct: 78 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 154 bits (391), Expect = 2e-41
Identities = 41/254 (16%), Positives = 88/254 (34%), Gaps = 14/254 (5%)
Query: 236 EDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK 295
+ +K ELG + +AL+ ++ AV+ DP + A V+
Sbjct: 15 TENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMG 74
Query: 296 EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRT 355
+ + + I+ + DF A + G+ K A+ F+K +
Sbjct: 75 KSKAALPDLTKVIQLKMDF---TAARLQRGHLLLKQGKLDEAEDDFKKVLK--------- 122
Query: 356 LISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYY 415
S + ++E + I + + + + F +G Y A+ + + D +
Sbjct: 123 --SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180
Query: 416 SNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475
RA C+ K + D + KL + + + + + ++ + L+L
Sbjct: 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240
Query: 476 DASNAEAVEGYRQC 489
D + Y+Q
Sbjct: 241 DQDHKRCFAHYKQV 254
Score = 109 bits (274), Expect = 8e-26
Identities = 39/285 (13%), Positives = 103/285 (36%), Gaps = 40/285 (14%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE--- 309
K+ +A++ A + + I+ +Y++ +++ + + + ++
Sbjct: 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242
Query: 310 -------NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362
+ K + K ++ + + +A +E M + E
Sbjct: 243 DHKRCFAHYKQVKKLNKLIES-AEELIRDGRYTDATSKYESVM-------------KTEP 288
Query: 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422
I E ++ + + K+ K +A++ +E + PD+ +RA Y
Sbjct: 289 SIAEYTVRSK---------ERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339
Query: 423 TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+D ++D ET + + + K + ++Q K ++ +A E
Sbjct: 340 LIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI 399
Query: 483 VEGYRQCSI------AVSSNPEEVRKRAMGD-PEVQQILRDPAMR 520
++ YR+ ++ + ++ ++ D +++L DP MR
Sbjct: 400 IKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444
Score = 105 bits (264), Expect = 2e-24
Identities = 30/117 (25%), Positives = 53/117 (45%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V + G L A +A+ + A+ D N+I + R+ F G + AL D
Sbjct: 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 84
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 126
K I LK D+ ++G L G+ E+ +++ LK +P+ + KEA + +
Sbjct: 85 KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSD 141
Score = 95.5 bits (238), Expect = 3e-21
Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 4/127 (3%)
Query: 3 NLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH----ILFSNRSAAFAKE 58
V +++ L + ++ + +A Y +K + + F+K+
Sbjct: 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308
Query: 59 GNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEA 118
+A+ + + ++PD + A Y E+I YE + + N++Q++E
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368
Query: 119 IKDVRNQ 125
++ +
Sbjct: 369 LEKAQRL 375
Score = 90.5 bits (225), Expect = 1e-19
Identities = 28/117 (23%), Positives = 54/117 (46%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
E+ L+ + A + ++ AI + +++ + L R+ F KEG KA+ D +
Sbjct: 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 201
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 126
LK D + + + + LG ++ S+S E LKLD ++++ K V+
Sbjct: 202 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 258
Score = 89.0 bits (221), Expect = 5e-19
Identities = 28/205 (13%), Positives = 72/205 (35%), Gaps = 19/205 (9%)
Query: 231 KPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ----NN 286
+ + K E E + + +A + Y ++ +P+ +
Sbjct: 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKER 300
Query: 287 IAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346
I + + ++ + I + ++ D AL+ Y E + A +E +
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDN---VNALKDRAEAYLIEEMYDEAIQDYETAQE 357
Query: 347 EH-RTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTE-A 404
+ +IR + + ++ +K+ +K+ Y + + +N K + +K Y + A
Sbjct: 358 HNENDQQIREGLEKAQRLLKQSQKRDY----------YKILGVKRNAKKQEIIKAYRKLA 407
Query: 405 INRNPDDPKYYSNRAACYTKLAAFD 429
+ +PD+ + + K
Sbjct: 408 LQWHPDNFQNEEEKKKAEKKFIDIA 432
Score = 76.6 bits (189), Expect = 4e-15
Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 12/111 (10%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ ++ +AI A KL N F S + + G++E +L + + + L
Sbjct: 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242
Query: 77 DWPKGYS------------RKGSALSYLGRYKESISTYEEGLKLDPNNEQM 115
D + ++ L GRY ++ S YE +K +P+ +
Sbjct: 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEY 293
Score = 74.7 bits (184), Expect = 2e-14
Identities = 20/110 (18%), Positives = 46/110 (41%)
Query: 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDA 68
Y V + + + +EAI SE ++++ N +R+ A+ E Y++A++D
Sbjct: 293 YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDY 352
Query: 69 EKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEA 118
E + + A L + ++ G+K + +++ +A
Sbjct: 353 ETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA 402
Score = 63.2 bits (154), Expect = 1e-10
Identities = 15/113 (13%), Positives = 36/113 (31%), Gaps = 15/113 (13%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ L A+ ++ I+L R K+G ++A +D +K + P
Sbjct: 66 RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125
Query: 77 DWP---------------KGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
+ + G Y +I+ ++ L++ + +
Sbjct: 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE 178
Score = 47.8 bits (114), Expect = 6e-06
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 25/88 (28%)
Query: 48 FSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107
+ E Y +++ D EK + G L G+ +++S + +
Sbjct: 6 HHSSGVDLGTENLYFQSMADVEK-----------HLELGKKLLAAGQLADALSQFHAAVD 54
Query: 108 LDPNN--------------EQMKEAIKD 121
DP+N + K A+ D
Sbjct: 55 GDPDNYIAYYRRATVFLAMGKSKAALPD 82
Score = 40.1 bits (94), Expect = 0.001
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 11/71 (15%)
Query: 412 PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEK 471
++ + + + D E + GK L Q + A+ +
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMADVEK-----------HLELGKKLLAAGQLADALSQFHA 51
Query: 472 ALELDASNAEA 482
A++ D N A
Sbjct: 52 AVDGDPDNYIA 62
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 146 bits (369), Expect = 2e-41
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 370 KAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFD 429
++ ++++ K GN +Y+ A+ YT+A++ P +P Y SNRAA Y+ +
Sbjct: 3 RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE 62
Query: 430 LGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV--EGYR 487
+D E +DPK+ K W R G M A +AYEK +E + + G
Sbjct: 63 KAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122
Query: 488 QC-------SIAVSSNPEEVRK------RAMGDPEVQQIL 514
+ ++V A G P++ +
Sbjct: 123 TTKRKIEEANRGAEPPADDVDDAAGASRGAGGMPDLSSLA 162
Score = 142 bits (359), Expect = 5e-40
Identities = 42/123 (34%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK +GNAA+ + +AI+ Y++A+ + N I SNR+AA++ G +EKA EDAE
Sbjct: 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV 73
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--EQMKEAIKDVRNQEMNDMN 131
+ P + K +SR G A + YK + YE+G++ + N + MK ++ + +++ + N
Sbjct: 74 VDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK-RKIEEAN 132
Query: 132 RGD 134
RG
Sbjct: 133 RGA 135
Score = 87.1 bits (216), Expect = 3e-20
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 6/138 (4%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
+ K K GN A +K + +A+ Y +A+ P + + +N AA Y ++++ E
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS---EHRTPEIRTLISEMEKK 363
+ +KA R+G M D+K AK +EK + + ++ + ++K
Sbjct: 71 ATVVDPKY---SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRK 127
Query: 364 IKEEEKKAYIDPVKAEEA 381
I+E + A ++A
Sbjct: 128 IEEANRGAEPPADDVDDA 145
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 150 bits (380), Expect = 1e-40
Identities = 38/241 (15%), Positives = 82/241 (34%), Gaps = 18/241 (7%)
Query: 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN 310
ELG + +AL+ ++ AV+ DP + A V+ + + + I
Sbjct: 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 66
Query: 311 RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKE--EE 368
+ DF A + G+ K A+ F+K + + +E E
Sbjct: 67 KMDF---TAARLQRGHLLLKQGKLDEAEDDFKK-------------VLKSNPSEQEEKEA 110
Query: 369 KKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAF 428
+ + + + + + + F Y A+ + + D + RA C+ K
Sbjct: 111 ESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEP 170
Query: 429 DLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQ 488
+ D + KL + + + + + ++ + L+LD + Y+Q
Sbjct: 171 RKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 230
Query: 489 C 489
Sbjct: 231 V 231
Score = 146 bits (371), Expect = 2e-39
Identities = 43/275 (15%), Positives = 102/275 (37%), Gaps = 28/275 (10%)
Query: 221 KKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD 280
KK P+++ + + L ++ + +A+ ++ A+ +K +E D
Sbjct: 95 KKVLKSNPSEQEEKEAESQLVKAD-EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD 153
Query: 281 ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVY 340
+ A + + E + I + ++D +A +I Y ++ D + +
Sbjct: 154 AELRELRAECFIKEGEPRKAISDLKAASKLKSDN---TEAFYKISTLYYQLGDHELSLSE 210
Query: 341 FEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYI---DPVKAEEAKERGNELFKNGKYADA 397
+ + K+ ++ K+ + K + E EL ++G+Y DA
Sbjct: 211 VRECL-----------------KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 253
Query: 398 VKEYTEAINRNPDDPKY----YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKG 453
+Y + P +Y C++K ++ C L+++P + +
Sbjct: 254 TSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313
Query: 454 KILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQ 488
+ + +AI YE A E + ++ + EG +
Sbjct: 314 EAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK 348
Score = 110 bits (278), Expect = 9e-27
Identities = 26/105 (24%), Positives = 49/105 (46%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
E+ E G +L G+ ADA+ ++ A++ +PD+ Y RA + + L D
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ L F +++G +L + +A D ++K L+ + S E
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE 107
Score = 104 bits (261), Expect = 1e-24
Identities = 30/117 (25%), Positives = 55/117 (47%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V + G L A +A+ + A+ D N+I + R+ F G + AL D
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 126
K I+LK D+ ++G L G+ E+ +++ LK +P+ ++ KEA + +
Sbjct: 62 KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD 118
Score = 99.7 bits (249), Expect = 5e-23
Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 4/124 (3%)
Query: 3 NLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLD----GTNHILFSNRSAAFAKE 58
V +++ L + ++ + +A Y +K + F+K+
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285
Query: 59 GNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEA 118
+A+ + + ++PD + A Y E+I YE + + N++Q++E
Sbjct: 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 345
Query: 119 IKDV 122
++
Sbjct: 346 LEKA 349
Score = 95.4 bits (238), Expect = 2e-21
Identities = 27/222 (12%), Positives = 77/222 (34%), Gaps = 34/222 (15%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE--- 309
K+ +A++ A + + I+ +Y++ +++ + + + ++
Sbjct: 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219
Query: 310 -------NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362
+ K + K ++ + + +A +E M + E
Sbjct: 220 DHKRCFAHYKQVKKLNKLIES-AEELIRDGRYTDATSKYESVM-------------KTEP 265
Query: 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422
+ E ++ + + K+ K +A++ +E + PD+ +RA Y
Sbjct: 266 SVAEYTVRSK---------ERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316
Query: 423 TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK 464
+D ++D E + + + K + + +QS+
Sbjct: 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR-LLKQSQ 357
Score = 90.8 bits (226), Expect = 5e-20
Identities = 28/117 (23%), Positives = 53/117 (45%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
E+ L+ + A ++ AI + +++ + L R+ F KEG KA+ D +
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 178
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 126
LK D + + + + LG ++ S+S E LKLD ++++ K V+
Sbjct: 179 AASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235
Score = 80.0 bits (198), Expect = 2e-16
Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 12/111 (10%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ ++ +AI A KL N F S + + G++E +L + + + L
Sbjct: 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219
Query: 77 DWPKGYS------------RKGSALSYLGRYKESISTYEEGLKLDPNNEQM 115
D + ++ L GRY ++ S YE +K +P+ +
Sbjct: 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEY 270
Score = 71.5 bits (176), Expect = 1e-13
Identities = 15/111 (13%), Positives = 36/111 (32%), Gaps = 15/111 (13%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSA---------------AFAKEGNY 61
+G+ L+ EA + + + +K + + S +Y
Sbjct: 77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136
Query: 62 EKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
A+ +K + + + + G +++IS + KL +N
Sbjct: 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN 187
Score = 68.5 bits (168), Expect = 1e-12
Identities = 17/90 (18%), Positives = 37/90 (41%)
Query: 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALED 67
Y V + + + +EAI SE ++++ N +R+ A+ E Y++A++D
Sbjct: 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD 328
Query: 68 AEKTISLKPDWPKGYSRKGSALSYLGRYKE 97
E + + A L + ++
Sbjct: 329 YEAAQEHNENDQQIREGLEKAQRLLKQSQK 358
Score = 38.4 bits (90), Expect = 0.005
Identities = 7/47 (14%), Positives = 17/47 (36%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQ 299
++ ++EA+ Y A E + D + + K+ +
Sbjct: 312 RAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQK 358
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 136 bits (344), Expect = 3e-38
Identities = 65/127 (51%), Positives = 91/127 (71%), Gaps = 4/127 (3%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
A KEKELGN+AYKKK+F+ AL HY+KA E DPT++T+ N AAVYFE+ +Y++C E +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 307 KIE----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362
IE NR D++ IAKA RIGN Y K E +K+A ++ KS++EHRTP++ + EK
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123
Query: 363 KIKEEEK 369
+KE+E+
Sbjct: 124 ILKEQER 130
Score = 114 bits (288), Expect = 2e-30
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
K+ GN A + +F A++ Y +A +LD TN +N++A + ++G+Y K E EK I
Sbjct: 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66
Query: 74 LKPDWP-------KGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMK---EAIKDVR 123
+ + K Y+R G++ +YK++I Y + L + +K +A K ++
Sbjct: 67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 126
Query: 124 NQE 126
QE
Sbjct: 127 EQE 129
Score = 110 bits (278), Expect = 4e-29
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCE 436
+A + KE GN+ +K + A+K Y +A +P + Y +N+AA Y + ++ + CE
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 437 TCLKLDPKFL-------KGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
+++ + K + R G ++ AI Y K+L + ++ +Q
Sbjct: 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH-RTPDVLKKCQQA 121
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 127 bits (320), Expect = 4e-35
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCE 436
+ E+ KE+GN LFK G Y +AV Y + I P +P YSN+A KL + ++ C+
Sbjct: 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQ 62
Query: 437 TCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484
L+ IR + ++ A+ + + + E +
Sbjct: 63 QGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYD 109
Score = 108 bits (273), Expect = 1e-28
Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 2/106 (1%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
K++GN+ + + EA+ Y + I N + +SN++ A K G Y +A++ ++ +
Sbjct: 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLK-LDPNNEQMKEA 118
R L + ++ + + + +D E +
Sbjct: 67 YTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDRS 111
Score = 70.4 bits (173), Expect = 5e-15
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Query: 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYI 305
+K+KE GN +K+ + EA+ Y++ + P + +N A + EY Q I+
Sbjct: 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQ 62
Query: 306 QKIE---NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT 350
Q + + +K R+ + + V ++ +
Sbjct: 63 QGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYDR 110
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 126 bits (319), Expect = 8e-35
Identities = 59/120 (49%), Positives = 84/120 (70%), Gaps = 4/120 (3%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
A EK+LGN AYK+K+FE+A HY+KA+E DP++ITF NN AAVYFE K++ +C++ +
Sbjct: 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67
Query: 307 KIE----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362
+E RAD+KLIAKA+ R GN ++K D A +F +S+SE R PE+ + E+EK
Sbjct: 68 AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKELEK 127
Score = 113 bits (285), Expect = 5e-30
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
KD GNAA + +F +A Y +AI+LD +N ++N++A + +E + + ++ EK +
Sbjct: 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70
Query: 74 LKPDWP-------KGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKE 117
+ + K SR G+A ++ + L + E +K+
Sbjct: 71 VGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK 121
Score = 106 bits (268), Expect = 9e-28
Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLK 433
A K+ GN +K + A Y +AI +P + +Y+N+AA Y + F ++
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 434 DCETCLKLDPKFL-------KGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486
CE +++ + K R G Q S A+ + ++L E V+
Sbjct: 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP-ELVKKV 122
Query: 487 RQC 489
++
Sbjct: 123 KEL 125
Score = 48.8 bits (117), Expect = 2e-07
Identities = 14/66 (21%), Positives = 28/66 (42%)
Query: 54 AFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNE 113
A K+ ++EKA +K I L P Y+ K + ++ E + E+ +++
Sbjct: 17 AAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76
Query: 114 QMKEAI 119
+ I
Sbjct: 77 ADYKLI 82
Score = 27.2 bits (61), Expect = 6.8
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 76 PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
D G+A ++++ Y++ ++LDP+N
Sbjct: 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN 41
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 130 bits (330), Expect = 1e-33
Identities = 42/231 (18%), Positives = 79/231 (34%), Gaps = 29/231 (12%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
EL + Y+ +FE A H + +P + +++++F+ + D+ I+
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
A+A +GN YK+ + A ++ ++
Sbjct: 64 PLL---AEAYSNLGNVYKERGQLQEAIEHYRHALR------------------------- 95
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
+ P + L G AV+ Y A+ NPD S+ L +
Sbjct: 96 -LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
++ P F W G + + AI +EKA+ LD + +A
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205
Score = 127 bits (322), Expect = 2e-32
Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 29/230 (12%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
L + ++ + + + A++ +P +N+ VY ER + + IE Y + +
Sbjct: 39 LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
DF + D + A + ++
Sbjct: 99 DF---IDGYINLAAALVAAGDMEGAVQAYVSALQ-------------------------- 129
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+P + GN L G+ +A Y +AI P+ +SN + L +
Sbjct: 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
E + LDP FL +I G +L+ + +A+ AY +AL L ++A
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239
Score = 127 bits (321), Expect = 3e-32
Identities = 39/230 (16%), Positives = 83/230 (36%), Gaps = 29/230 (12%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LG + A+ H+ KAV DP + N+ V E + +D+ + Y++ +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
+ A + Y + A + +++ +++ AY
Sbjct: 235 NH---AVVHGNLACVYYEQGLIDLAIDTYRRAI-----------------ELQPHFPDAY 274
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ N L + G A+A Y A+ P +N A + + +
Sbjct: 275 CN---------LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ L++ P+F +LQ + +A+ Y++A+ + + A+A
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375
Score = 104 bits (261), Expect = 2e-24
Identities = 41/208 (19%), Positives = 78/208 (37%), Gaps = 29/208 (13%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LGN + + F+ A+A Y +A+ P N+A VY+E+ D I+ Y + IE +
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
F A + N K+ A+ + ++ ++ +
Sbjct: 269 HF---PDAYCNLANALKEKGSVAEAEDCYNTAL-----------------RLCPTHADSL 308
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ N + G +AV+ Y +A+ P+ +SN A+ + L
Sbjct: 309 NN---------LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQ 460
+ +++ P F + G L+ MQ
Sbjct: 360 MHYKEAIRISPTFADAYSNMGNTLKEMQ 387
Score = 89.5 bits (223), Expect = 2e-19
Identities = 22/101 (21%), Positives = 41/101 (40%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
L + Q + + AIK + +SN + + G ++A+E +
Sbjct: 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR 95
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
LKPD+ GY +AL G + ++ Y L+ +P+
Sbjct: 96 LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136
Score = 86.4 bits (215), Expect = 2e-18
Identities = 23/96 (23%), Positives = 49/96 (51%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
NA + + EA + Y+ A++L T+ +N + ++GN E+A+ K + + P
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
++ +S S L G+ +E++ Y+E +++ P
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372
Score = 84.9 bits (211), Expect = 6e-18
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GN + EAIE Y A++L + N +AA G+ E A++ + P
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
D S G+ L LGR +E+ + Y + ++ PN
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168
Score = 84.1 bits (209), Expect = 1e-17
Identities = 22/96 (22%), Positives = 42/96 (43%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
A + A + A++AY A++ + + + S+ G E+A K I +P
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
++ +S G + G +I +E+ + LDPN
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202
Score = 83.4 bits (207), Expect = 2e-17
Identities = 24/96 (25%), Positives = 40/96 (41%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GN EA Y +AI+ + +SN F +G A+ EK ++L P
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
++ Y G+ L + +++ Y L L PN+
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236
Score = 83.4 bits (207), Expect = 2e-17
Identities = 18/97 (18%), Positives = 38/97 (39%)
Query: 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK 75
+ + QA +F A + + + N + S+ + +++ + I
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 76 PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
P + YS G+ G+ +E+I Y L+L P+
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100
Score = 83.0 bits (206), Expect = 3e-17
Identities = 17/96 (17%), Positives = 36/96 (37%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ AI+ Y AI+L + N + A ++G+ +A + + L P
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + G +E++ Y + L++ P
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338
Score = 83.0 bits (206), Expect = 3e-17
Identities = 17/96 (17%), Positives = 34/96 (35%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G AI + +A+ LD + N + +++A+ + +SL P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + G +I TY ++L P+
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270
Score = 83.0 bits (206), Expect = 3e-17
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GN +A F A+ AY A+ L + ++ N + + ++G + A++ + I L+P
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 121
+P Y +AL G E+ Y L+L P + ++EA++
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327
Score = 62.2 bits (152), Expect = 2e-10
Identities = 17/77 (22%), Positives = 35/77 (45%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
N + N EA+ Y +A+++ SN ++ ++G ++AL ++ I + P
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
Query: 77 DWPKGYSRKGSALSYLG 93
+ YS G+ L +
Sbjct: 371 TFADAYSNMGNTLKEMQ 387
Score = 58.3 bits (142), Expect = 3e-09
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
L N ++ N EEA+ Y KA+E P +N+A+V ++ + + + Y + I
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
Query: 313 DFKLIAKALQRIGNCYKKMED 333
F A A +GN K+M+D
Sbjct: 371 TF---ADAYSNMGNTLKEMQD 388
Score = 52.2 bits (126), Expect = 2e-07
Identities = 9/68 (13%), Positives = 22/68 (32%)
Query: 415 YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474
A + F+ + C + +P + I ++ ++ A++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 475 LDASNAEA 482
+ AEA
Sbjct: 62 QNPLLAEA 69
Score = 32.9 bits (76), Expect = 0.25
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN 60
+ Q EA+ Y EAI++ T +SN + +
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
Score = 32.5 bits (75), Expect = 0.34
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
G G ++ + + + +P+N
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDN 32
Score = 32.5 bits (75), Expect = 0.36
Identities = 3/35 (8%), Positives = 6/35 (17%)
Query: 448 GWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
G + A + + N
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGV 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 126 bits (318), Expect = 6e-33
Identities = 39/236 (16%), Positives = 72/236 (30%), Gaps = 35/236 (14%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQ---CIEQYIQKIE 309
+ +K N+ EA+ +NK N A Y+E +YD IE Y K+
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68
Query: 310 NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEK 369
+ + G K A ++ ++
Sbjct: 69 ATKAK---SADFEYYGKILMKKGQDSLAIQQYQAAVD----------------------- 102
Query: 370 KAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFD 429
D + + + G+ + G + A++ + I DPK + Y +
Sbjct: 103 ---RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV 159
Query: 430 LGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK---AIDAYEKALELDASNAEA 482
L+L P G++ + + +K A YEK +E+ A
Sbjct: 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215
Score = 108 bits (271), Expect = 2e-26
Identities = 32/244 (13%), Positives = 69/244 (28%), Gaps = 43/244 (17%)
Query: 253 LGNEAYKKKNFEEALA---HYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309
Y+ ++ A Y V + ++ + I+QY ++
Sbjct: 43 RAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102
Query: 310 NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEK 369
+IG+ + ++ A Y EK + + +
Sbjct: 103 RDTTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQI-----------------RPTTTDP 142
Query: 370 KAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL---A 426
K + + G + N +Y A + + + P+ Y RA
Sbjct: 143 KVFYE---------LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDT 193
Query: 427 AFDLGLKDCETCLKLDPK--------FLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478
L E +++ ++ + + KA A++ L LD +
Sbjct: 194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253
Query: 479 NAEA 482
N +A
Sbjct: 254 NKKA 257
Score = 100 bits (250), Expect = 9e-24
Identities = 32/198 (16%), Positives = 67/198 (33%), Gaps = 26/198 (13%)
Query: 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
A F+ Y + IE + + + + R CY ++ + A+ E
Sbjct: 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNS---PYIYNRRAVCYYELAKYDLAQKDIET- 62
Query: 345 MSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404
K+ K+ + + G L K G+ + A+++Y A
Sbjct: 63 ---------------YFSKVN-------ATKAKSADFEYYGKILMKKGQDSLAIQQYQAA 100
Query: 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK 464
++R+ Y + + F L ++ E ++ K + G+ ++ K
Sbjct: 101 VDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK 160
Query: 465 AIDAYEKALELDASNAEA 482
A ++ K LEL +
Sbjct: 161 ADSSFVKVLELKPNIYIG 178
Score = 85.8 bits (213), Expect = 6e-19
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
+ + LFKN YA+A++ + + + + P Y+ RA CY +LA +DL KD ET
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62
Query: 438 ---CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ + GKIL Q S AI Y+ A++ D + +
Sbjct: 63 YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM 110
Score = 85.8 bits (213), Expect = 7e-19
Identities = 33/221 (14%), Positives = 56/221 (25%), Gaps = 40/221 (18%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
G KK A+ Y AV+ D T + I + ++ + + I+ ++I
Sbjct: 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
K +G Y +++ A F K +
Sbjct: 140 TD---PKVFYELGQAYYYNKEYVKADSSFVKVLE-------------------------- 170
Query: 373 IDPVKAEEAKERGN---ELFKNGKYADAVKEYTEAIN--------RNPDDPKYYSNRAAC 421
+ P R + K A Y + I + + A
Sbjct: 171 LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230
Query: 422 YTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQ 462
YT + L LDP K L+
Sbjct: 231 YTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
Score = 82.3 bits (204), Expect = 1e-17
Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 17/122 (13%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE---KTIS 73
+ + NN+ EAIE +++ + +++ R+ + + Y+ A +D E ++
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAI 119
+ G L G+ +I Y+ + D AI
Sbjct: 69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI 128
Query: 120 KD 121
+
Sbjct: 129 QY 130
Score = 81.9 bits (203), Expect = 2e-17
Identities = 25/96 (26%), Positives = 43/96 (44%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G ++ AI+ Y A+ D T ++ + F +GN+ A++ EK I
Sbjct: 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
PK + G A Y Y ++ S++ + L+L PN
Sbjct: 140 TDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175
Score = 78.1 bits (193), Expect = 3e-16
Identities = 27/178 (15%), Positives = 54/178 (30%), Gaps = 24/178 (13%)
Query: 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN 310
++G+ Y K NF A+ + K + TD + Y+ KEY + +++ +E
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171
Query: 311 RADFKLIAKALQRIGNCYKKMEDWKN---AKVYFEKSMSEHRTPEIRTLISEMEKKIKEE 367
+ + + AK Y+EK + + + K K+E
Sbjct: 172 KPNI---YIGYLWRARANAAQDPDTKQGLAKPYYEKLIE---------VCAPGGAKYKDE 219
Query: 368 EKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
+A + N A + + +P + K
Sbjct: 220 LIEAN---------EYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268
Score = 74.6 bits (184), Expect = 4e-15
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G+ NF AI+ + I+ T+ +F A+ Y KA K + LKP
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP 173
Query: 77 DWPKGYSRKGSALSYLG---RYKESISTYEEGLKLDPNNEQ 114
+ GY + A + + + YE+ +++
Sbjct: 174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214
Score = 74.6 bits (184), Expect = 4e-15
Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 3/99 (3%)
Query: 17 KGNAALQANNF---IEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ + + + IE Y + F K+G A++ + +
Sbjct: 43 RAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
Y + GS G + +I E+ ++ +
Sbjct: 103 RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141
Score = 64.6 bits (158), Expect = 1e-11
Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 11/120 (9%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN----------YEKALE 66
G A +++A ++ + ++L +I + R+ A A + YEK +E
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207
Query: 67 -DAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125
A K + + + ++ + ++ L LDP N++ + +K
Sbjct: 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267
Score = 53.8 bits (130), Expect = 4e-08
Identities = 9/81 (11%), Positives = 20/81 (24%), Gaps = 8/81 (9%)
Query: 23 QANNFIEAIEAYSEAIKLDGTNHIL--------FSNRSAAFAKEGNYEKALEDAEKTISL 74
A Y + I++ + + + KA + ++L
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250
Query: 75 KPDWPKGYSRKGSALSYLGRY 95
P K L + +
Sbjct: 251 DPTNKKAIDGLKMKLEHHHHH 271
Score = 52.7 bits (127), Expect = 9e-08
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 50 NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESIS---TYEEGL 106
+ K NY +A+E K + K + P Y+R+ L +Y + TY +
Sbjct: 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV 67
Query: 107 KLDPNNEQ 114
Sbjct: 68 NATKAKSA 75
Score = 35.3 bits (82), Expect = 0.038
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 79 PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
R L Y E+I + + N+
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNS 36
Score = 32.2 bits (74), Expect = 0.39
Identities = 6/45 (13%), Positives = 13/45 (28%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNY 61
+ ++A A+ + LD TN ++
Sbjct: 227 IAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 121 bits (306), Expect = 2e-31
Identities = 41/230 (17%), Positives = 75/230 (32%), Gaps = 29/230 (12%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
+ ++E+A + KA+E + D N A + E ++ + Y + +E +
Sbjct: 29 QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
A A GN Y E +K AK FEK++
Sbjct: 89 SA---ATAYYGAGNVYVVKEMYKEAKDMFEKALR-------------------------- 119
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ G L K + A+ A+ N +D + C D L
Sbjct: 120 AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ DP + G + + KA++ +KA+++ + A
Sbjct: 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229
Score = 105 bits (265), Expect = 6e-26
Identities = 30/223 (13%), Positives = 69/223 (30%), Gaps = 33/223 (14%)
Query: 264 EEALAHYNKAVEFDPTDITFQNNIAAVYFER----KEYDQCIEQYIQKIENRADFKLIAK 319
+ H++ + P + R +Y++ E + + IE + A
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED---AI 58
Query: 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAE 379
N + + + A +++K++ ++ AY
Sbjct: 59 PYINFANLLSSVNELERALAFYDKAL-----------------ELDSSAATAYYG----- 96
Query: 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCL 439
GN Y +A + +A+ ++ + KL L L + +
Sbjct: 97 ----AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152
Query: 440 KLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+L+ + + G L +A+ + E D +A+A
Sbjct: 153 ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195
Score = 99.5 bits (249), Expect = 8e-24
Identities = 32/210 (15%), Positives = 67/210 (31%), Gaps = 29/210 (13%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
N E ALA Y+KA+E D + T VY ++ Y + + + + +
Sbjct: 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
+ +G K+E K A Y ++++ ++ E + +A
Sbjct: 123 EN---GDLFYMLGTVLVKLEQPKLALPYLQRAV-----------------ELNENDTEAR 162
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
G L G +A+ ++ ++P + N Y + L
Sbjct: 163 FQ---------FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQ 462
+ + + + P + K +
Sbjct: 214 EMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243
Score = 83.7 bits (208), Expect = 2e-18
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 14/118 (11%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
+ ++ +A EA+++AI+ + + I + N + + E+AL +K + L
Sbjct: 30 MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS 89
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 121
Y G+ YKE+ +E+ L+ N EQ K A+
Sbjct: 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPY 147
Score = 82.9 bits (206), Expect = 4e-18
Identities = 13/98 (13%), Positives = 34/98 (34%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G ++ A+ A++L+ + A EG ++AL P
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
+ G +Y ++++ ++ + + P++
Sbjct: 191 GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228
Score = 82.2 bits (204), Expect = 8e-18
Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 14/119 (11%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GN + + EA + + +A++ N LF K + AL ++ + L
Sbjct: 97 AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 121
+ + + G L+ G E++S + + DP + E ++A++
Sbjct: 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215
Score = 79.9 bits (198), Expect = 5e-17
Identities = 17/96 (17%), Positives = 40/96 (41%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
N N A+ Y +A++LD + + + + Y++A + EK +
Sbjct: 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + G+ L L + K ++ + ++L+ N+
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158
Score = 69.9 bits (172), Expect = 1e-13
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 29 EAIEAYSEAIKLD----GTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSR 84
+ + + L + + ++ G+YEKA E K I + Y
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62
Query: 85 KGSALSYLGRYKESISTYEEGLKLDPNN 112
+ LS + + +++ Y++ L+LD +
Sbjct: 63 FANLLSSVNELERALAFYDKALELDSSA 90
Score = 67.2 bits (165), Expect = 9e-13
Identities = 18/79 (22%), Positives = 30/79 (37%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G EA+ ++ + D + F N +A + N EKALE +K I ++P
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224
Query: 77 DWPKGYSRKGSALSYLGRY 95
D K + +
Sbjct: 225 DHMLALHAKKLLGHHHHHH 243
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 115 bits (289), Expect = 2e-28
Identities = 31/231 (13%), Positives = 67/231 (29%), Gaps = 14/231 (6%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
E G K N EA + + P ++ E ++ I
Sbjct: 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 85
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
+ + + A + P+ L S + + +
Sbjct: 86 PKD---IAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLN 140
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
+ +Y + A+ NP+D + +++ Y +D
Sbjct: 141 V---------QSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ ++L P + W + G L + +A+DAY +AL+++
Sbjct: 192 AANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242
Score = 88.1 bits (219), Expect = 3e-19
Identities = 16/124 (12%), Positives = 34/124 (27%)
Query: 359 EMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNR 418
M + + +A + E E G + K A+A + P+ + + +
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 419 AACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478
+ L + LDPK + + A+ + L
Sbjct: 62 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121
Query: 479 NAEA 482
+
Sbjct: 122 YEQL 125
Score = 82.0 bits (203), Expect = 3e-17
Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 8/126 (6%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G +NN+ A A++L + L++ A A ++AL+ + + + P
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--------EQMKEAIKDVRNQEMN 128
+ + + S + +Y + + + + ++ D +N
Sbjct: 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297
Query: 129 DMNRGD 134
MNR D
Sbjct: 298 VMNRPD 303
Score = 81.6 bits (202), Expect = 4e-17
Identities = 32/250 (12%), Positives = 69/250 (27%), Gaps = 56/250 (22%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDP---------------TDITFQNNIAAVYFERKEY 297
L + N ALA + P D + + EY
Sbjct: 95 LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY 154
Query: 298 DQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLI 357
+C +E + A+ +G Y ++ +A +++
Sbjct: 155 RECRTLLHAALEMNPND---AQLHASLGVLYNLSNNYDSAAANLRRAVE----------- 200
Query: 358 SEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSN 417
++ ++ + + G L + +A+ Y A++ NP + N
Sbjct: 201 ------LRPDDAQLWNK---------LGATLANGNRPQEALDAYNRALDINPGYVRVMYN 245
Query: 418 RAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK------------GKILQGMQQQSKA 465
A Y+ ++ +DL K + + +L M +
Sbjct: 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305
Query: 466 IDAYEKALEL 475
Y + +E
Sbjct: 306 ELTYAQNVEP 315
Score = 79.6 bits (197), Expect = 2e-16
Identities = 17/96 (17%), Positives = 43/96 (44%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ N + E A++++ + L ++ + NY+ A + + + L+P
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
D + +++ G+ L+ R +E++ Y L ++P
Sbjct: 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY 239
Score = 76.6 bits (189), Expect = 2e-15
Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 2/125 (1%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+G + L+ N EA A+ + + + A+ A+ L P
Sbjct: 27 EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQM--KEAIKDVRNQEMNDMNRGD 134
++ + + ++++ L P EQ+ DV ++N +
Sbjct: 87 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146
Query: 135 PFANL 139
FA
Sbjct: 147 FFAAP 151
Score = 70.4 bits (173), Expect = 2e-13
Identities = 12/87 (13%), Positives = 24/87 (27%)
Query: 26 NFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRK 85
+ ++ Y H + K N +A E P+ + +
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 86 GSALSYLGRYKESISTYEEGLKLDPNN 112
G + + +I LDP +
Sbjct: 62 GLTQAENEKDGLAIIALNHARMLDPKD 88
Score = 68.1 bits (167), Expect = 1e-12
Identities = 16/91 (17%), Positives = 24/91 (26%)
Query: 392 GKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR 451
G +Y N + KLA E + P+ + W
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 452 KGKILQGMQQQSKAIDAYEKALELDASNAEA 482
G ++ AI A A LD +
Sbjct: 61 LGLTQAENEKDGLAIIALNHARMLDPKDIAV 91
Score = 64.2 bits (157), Expect = 2e-11
Identities = 11/114 (9%), Positives = 34/114 (29%), Gaps = 15/114 (13%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLD---------------GTNHILFSNRSAAFAKEGNY 61
+ +N A+ + + + + + FA Y
Sbjct: 95 LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY 154
Query: 62 EKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQM 115
+ + + P+ + ++ G + Y + + ++L P++ Q+
Sbjct: 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208
Score = 41.9 bits (99), Expect = 3e-04
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 14/77 (18%)
Query: 59 GNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN------- 111
G+ + D + + + +G ++ L E+ +E + P
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 112 -------NEQMKEAIKD 121
NE+ AI
Sbjct: 61 LGLTQAENEKDGLAIIA 77
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 111 bits (280), Expect = 3e-27
Identities = 30/218 (13%), Positives = 65/218 (29%), Gaps = 20/218 (9%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
G+ + ++A+A Y A + I Y + Q +
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
+ + +G + +WK A+ +F ++ + +
Sbjct: 191 ED---PFVMHEVGVVAFQNGEWKTAEKWFLDAL-----------------EKIKAIGNEV 230
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
G+ K KYA+A+ + +A+ P + YS ++ + F+ +
Sbjct: 231 TVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAV 290
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYE 470
T L L G ++ S+A +
Sbjct: 291 DYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGAD 328
Score = 111 bits (280), Expect = 3e-27
Identities = 42/233 (18%), Positives = 72/233 (30%), Gaps = 38/233 (16%)
Query: 259 KKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIA 318
E A + +KA + T + E+DQ + Y +
Sbjct: 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC---H 159
Query: 319 KALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKA 378
+ IG Y + K A+ +F +++S I P
Sbjct: 160 LPMLYIGLEYGLTNNSKLAERFFSQALS--------------------------IAPEDP 193
Query: 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPD------DPKY---YSNRAACYTKLAAFD 429
E G F+NG++ A K + +A+ + K+ +N KL +
Sbjct: 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253
Query: 430 LGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L L L P+ + G I M A+D + AL L + +
Sbjct: 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306
Score = 97.4 bits (243), Expect = 2e-22
Identities = 28/232 (12%), Positives = 61/232 (26%), Gaps = 30/232 (12%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
L Y +F+ + +E DP + E + ++ + ++
Sbjct: 28 LAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP 87
Query: 313 DFKLIAKALQRIGNCYKKM-EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
+ +G Y + ++A+ Y K+ +++ A
Sbjct: 88 SN---PVSWFAVGCYYLMVGHKNEHARRYLSKAT-----------------TLEKTYGPA 127
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
+I G+ ++ A+ Y A Y L
Sbjct: 128 WIA---------YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483
+ L + P+ G + + A + ALE + V
Sbjct: 179 ERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEV 230
Score = 72.7 bits (179), Expect = 4e-14
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 9/105 (8%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL-- 74
G NN A +S+A+ + + + + G ++ A + +
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224
Query: 75 -------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
W + G L +Y E++ + + L L P N
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN 269
Score = 72.3 bits (178), Expect = 5e-14
Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 9/115 (7%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKL---------DGTNHILFSNRSAAFAKEGNYEKALED 67
G A Q + A + + +A++ L +N K Y +AL+
Sbjct: 199 VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258
Query: 68 AEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV 122
+ + L P YS G S +G ++ ++ + L L ++ +
Sbjct: 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313
Score = 69.2 bits (170), Expect = 6e-13
Identities = 16/95 (16%), Positives = 34/95 (35%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G++ + +A+ AY A +L H+ + N + A + +S+ P
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN 111
+ P G G +K + + + L+
Sbjct: 191 EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225
Score = 68.1 bits (167), Expect = 1e-12
Identities = 12/112 (10%), Positives = 32/112 (28%), Gaps = 1/112 (0%)
Query: 2 ENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNY 61
E++ L + ++ +F + S ++ D + +
Sbjct: 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKA 72
Query: 62 EKALEDAEKTISLKPDWPKGYSRKGSALSYLGR-YKESISTYEEGLKLDPNN 112
+ + K + L P P + G +G + + + L+
Sbjct: 73 NELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY 124
Score = 65.4 bits (160), Expect = 1e-11
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 1/97 (1%)
Query: 17 KGNAALQANNFIE-AIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK 75
G L + E A S+A L+ T + +FA E +++A+ L
Sbjct: 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155
Query: 76 PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
G K + + + L + P +
Sbjct: 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192
Score = 63.1 bits (154), Expect = 6e-11
Identities = 15/87 (17%), Positives = 34/87 (39%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G+ + + EA++ + +A+ L N +S + GN+E A++ + L+
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYE 103
D + G + E+ +
Sbjct: 302 DDTFSVTMLGHCIEMYIGDSEAYIGAD 328
Score = 62.3 bits (152), Expect = 9e-11
Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 38/159 (23%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ---------NNIAAVYFERKEYDQCIE 302
E+G A++ ++ A + A+E NN+ V + K+Y + ++
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257
Query: 303 QYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362
+ Q + A IG + M +++NA YF ++
Sbjct: 258 YHRQALVLIPQN---ASTYSAIGYIHSLMGNFENAVDYFHTALG---------------- 298
Query: 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEY 401
+ G+ + ++A
Sbjct: 299 ----------LRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
Score = 54.2 bits (131), Expect = 4e-08
Identities = 9/86 (10%), Positives = 24/86 (27%)
Query: 29 EAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSA 88
+ E++ N + + + +++ + + P
Sbjct: 6 PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT 65
Query: 89 LSYLGRYKESISTYEEGLKLDPNNEQ 114
L L + E + + L P+N
Sbjct: 66 LVELNKANELFYLSHKLVDLYPSNPV 91
Score = 41.9 bits (99), Expect = 3e-04
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 59 GNYEKALEDA-EKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
G+Y K E +++ + Y +K ++ DP +
Sbjct: 1 GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFH 55
Score = 29.6 bits (67), Expect = 2.5
Identities = 6/66 (9%), Positives = 15/66 (22%), Gaps = 5/66 (7%)
Query: 421 CYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480
Y K + + + L + + +E D +A
Sbjct: 2 SYNKPSE-----TVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA 56
Query: 481 EAVEGY 486
+ +
Sbjct: 57 SCLPVH 62
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 114 bits (287), Expect = 5e-27
Identities = 32/237 (13%), Positives = 61/237 (25%), Gaps = 36/237 (15%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
+G EA +++K+ DP A + E+DQ I Y
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
+G + ++ + A Y + S +
Sbjct: 439 GT---HLPYLFLGMQHMQLGNILLANEYLQSSYA-------------------------- 469
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAI-------NRNPDDPKYYSNRAACYTKL 425
+ E G F A+ + A+ + ++N Y KL
Sbjct: 470 LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529
Query: 426 AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+D + L L + + AI ++L + + A
Sbjct: 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586
Score = 108 bits (271), Expect = 5e-25
Identities = 61/491 (12%), Positives = 133/491 (27%), Gaps = 68/491 (13%)
Query: 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEK 70
L+ + AL + A + + + G + F + + G+Y +A K
Sbjct: 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTK 142
Query: 71 TISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDM 130
Y + ++ L L ++ K+ M D
Sbjct: 143 EDLYNRSSACRY--------LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDG 194
Query: 131 NRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTT 190
+ + ++ L + Y + + D +
Sbjct: 195 GIKLEASMCYLRGQVYTNLS-----NFDRAKECYKEALM-------------VDAKCYEA 236
Query: 191 LSVLLGVNMSSTMGDGD-AEEMDVDPQPPSPKKAPSP-----------PPAKKPAEPEDK 238
L+ ++ + + D +++ + AE
Sbjct: 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296
Query: 239 NLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYD 298
++ ++S+ + + + F + LA K +E DP ++ A E E +
Sbjct: 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN 356
Query: 299 QCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLIS 358
+ ++ + A +G Y + A+ YF KS S
Sbjct: 357 KLYLISNDLVDRHPEK---AVTWLAVGIYYLCVNKISEARRYFSKS-------------S 400
Query: 359 EMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNR 418
M+ + A+I + G++ A+ YT A Y
Sbjct: 401 TMDPQFGP----AWIG---------FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL 447
Query: 419 AACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478
+ +L L + ++ L G + AI+ ++ AL L
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507
Query: 479 NAEAVEGYRQC 489
+ +
Sbjct: 508 TQSNEKPWAAT 518
Score = 101 bits (253), Expect = 8e-23
Identities = 20/205 (9%), Positives = 55/205 (26%), Gaps = 22/205 (10%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
+ + ++A++ Y A + + + E
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
L +G D + A +F+ ++ + + + ++ +
Sbjct: 473 YD---PLLLNELGVVAFNKSDMQTAINHFQNALL----------LVKKTQSNEKPWAATW 519
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ G+ K Y A+ + + + +D ++ A Y L +
Sbjct: 520 AN---------LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAI 570
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQ 457
L + P + + L+
Sbjct: 571 THLHESLAISPNEIMASDLLKRALE 595
Score = 90.3 bits (224), Expect = 3e-19
Identities = 40/321 (12%), Positives = 97/321 (30%), Gaps = 20/321 (6%)
Query: 167 MIKEIQKDPSLMTTK--LKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAP 224
++K Q D + +T P + + +M + + ++ P A
Sbjct: 2 VVKRTQTDSRMQSTPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLAN 61
Query: 225 SPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ 284
+ + + TD + ++A ++ ++ A K ++
Sbjct: 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF 121
Query: 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
+A VY +Y + ++ + C K+ DW+ A ++
Sbjct: 122 -WLAQVYCCTGDYARAKCLLTKEDLYNRS----SACRYLAAFCLVKLYDWQGALNLLGET 176
Query: 345 MSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404
+ + + + IK E A RG + A + Y EA
Sbjct: 177 NPFRKDEKNANKLLMQDGGIKLE----------ASMCYLRGQVYTNLSNFDRAKECYKEA 226
Query: 405 INRNPDDPKYYSNRAACYTKLAAFDLGL---KDCETCLKLDPKFLKGWIRKGKILQGMQQ 461
+ + + + + + A + L + T K D FL+ +
Sbjct: 227 LMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286
Query: 462 QSKAIDAYEKALELDASNAEA 482
+ + + Y ++ +++
Sbjct: 287 ELRRAEDYLSSINGLEKSSDL 307
Score = 87.2 bits (216), Expect = 3e-18
Identities = 18/176 (10%), Positives = 47/176 (26%), Gaps = 30/176 (17%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE--- 309
LG + + N A + + D N + V F + + I + +
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506
Query: 310 -NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEE 368
+++ K A +G+ Y+K++ + A + + +
Sbjct: 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG-----------------LLLSTND 549
Query: 369 KKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK 424
+ A+ E++ +P++ +
Sbjct: 550 ANVHTA---------IALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
Score = 76.8 bits (189), Expect = 6e-15
Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 7/103 (6%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL-- 74
G +Q N + A E + L + +L + + + + A+ + + L
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506
Query: 75 -----KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ W ++ G A L Y +I +GL L N+
Sbjct: 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549
Score = 76.4 bits (188), Expect = 9e-15
Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 7/113 (6%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKL-------DGTNHILFSNRSAAFAKEGNYEKALEDAE 69
G A ++ AI + A+ L + ++N A+ K Y+ A++
Sbjct: 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV 122
+ + L + ++ + +I+ E L + PN + +K
Sbjct: 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593
Score = 71.8 bits (176), Expect = 2e-13
Identities = 17/109 (15%), Positives = 37/109 (33%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
++ +AI AY+ A +L H+ + + GN A E + + +L
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125
P + G + +I+ ++ L L + ++
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521
Score = 60.6 bits (147), Expect = 7e-10
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 10/102 (9%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ-------NNIAAVYFERKEYDQCIEQY 304
ELG A+ K + + A+ H+ A+ + + N+ Y + K YD I+
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539
Query: 305 IQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346
Q + + A I Y + A + +S++
Sbjct: 540 NQGLLLSTND---ANVHTAIALVYLHKKIPGLAITHLHESLA 578
Score = 40.6 bits (95), Expect = 0.001
Identities = 14/107 (13%), Positives = 32/107 (29%), Gaps = 11/107 (10%)
Query: 6 SLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKAL 65
L+ + L A + + + A+ L G + + A
Sbjct: 138 CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLG----------ETNPFRKDEKNAN 187
Query: 66 EDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + +K + +G + L + + Y+E L +D
Sbjct: 188 KLLMQDGGIKLE-ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 112 bits (283), Expect = 7e-27
Identities = 39/125 (31%), Positives = 69/125 (55%), Gaps = 4/125 (3%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK + N +A ++ AI+ YS+AI+L+ +N I + NRS A+ + Y AL DA + I
Sbjct: 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 68
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN----EQMKEAIKDVRNQEMND 129
L + KGY R+ ++ LG+++ ++ YE +K+ P++ + +E K V+ +
Sbjct: 69 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 128
Query: 130 MNRGD 134
GD
Sbjct: 129 AIAGD 133
Score = 105 bits (264), Expect = 2e-24
Identities = 34/117 (29%), Positives = 62/117 (52%)
Query: 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLK 433
+AEE K + N+ FK Y +A+K Y++AI NP + YY NR+ Y + + L
Sbjct: 2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG 61
Query: 434 DCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCS 490
D ++LD K++KG+ R+ + + A+ YE +++ + +A Y++C+
Sbjct: 62 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 118
Score = 65.5 bits (160), Expect = 2e-11
Identities = 25/139 (17%), Positives = 58/139 (41%), Gaps = 7/139 (5%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
A++ K N+ +K K++E A+ Y++A+E +P++ + N + Y + Y + +
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS-EHRTPEIRTLISEMEKKIK 365
IE + K R + ++ A +E + + + + E K +K
Sbjct: 66 AIELDKKY---IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK 122
Query: 366 EEEKKAYIDPVKAEEAKER 384
++ + + +E K
Sbjct: 123 QKA---FERAIAGDEHKRS 138
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 110 bits (278), Expect = 3e-26
Identities = 19/230 (8%), Positives = 48/230 (20%), Gaps = 29/230 (12%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
G + + L +A P + + + + + + Q
Sbjct: 248 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP 307
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
A+ G + +E + ++
Sbjct: 308 QQ---VVAIASNGGGKQALETVQRLLPVLCQAHG-------------------------- 338
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ P + + +A P+ ++ L L
Sbjct: 339 LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLL 398
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L P+ + Q ++ + + +A L A
Sbjct: 399 PVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 448
Score = 109 bits (275), Expect = 8e-26
Identities = 20/231 (8%), Positives = 48/231 (20%), Gaps = 29/231 (12%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
+ + L +A P + + + + + Q
Sbjct: 145 SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
A+ G + +E + ++
Sbjct: 205 PQQ---VVAIASNGGGKQALETVQRLLPVLCQAHG------------------------- 236
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
+ P + G + +A P ++ + L
Sbjct: 237 -LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRL 295
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L L P+ + G Q ++ + + +A L A
Sbjct: 296 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 346
Score = 99.1 bits (247), Expect = 3e-22
Identities = 22/236 (9%), Positives = 50/236 (21%), Gaps = 33/236 (13%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
AK+ EA + AL + P + + + + + Q
Sbjct: 42 AKRGGVTAVEA--VHAWRNAL--TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQ 97
Query: 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKE 366
A+ + +E + ++
Sbjct: 98 AHGLTPQQ---VVAIASHDGGKQALETVQRLLPVLCQAHG-------------------- 134
Query: 367 EEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA 426
+ P + + +A P+ ++ L
Sbjct: 135 ------LTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALE 188
Query: 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L L P+ + G Q ++ + + +A L A
Sbjct: 189 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 244
Score = 80.9 bits (200), Expect = 2e-16
Identities = 14/191 (7%), Positives = 37/191 (19%), Gaps = 29/191 (15%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
G + + L +A P + + + + + Q
Sbjct: 316 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 375
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
+ A+ G + +E + ++
Sbjct: 376 EQ---VVAIASNGGGKQALETVQRLLPVLCQAHG-------------------------- 406
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ P + + +A P ++ L + L
Sbjct: 407 LTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQL 466
Query: 433 KDCETCLKLDP 443
+ L
Sbjct: 467 SRPDPALAALT 477
Score = 77.9 bits (192), Expect = 2e-15
Identities = 10/101 (9%), Positives = 23/101 (22%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ G + +A L + ++ ++ L +
Sbjct: 177 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 236
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
L P + G L + + + L P
Sbjct: 237 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 277
Score = 77.9 bits (192), Expect = 2e-15
Identities = 9/119 (7%), Positives = 24/119 (20%), Gaps = 14/119 (11%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ +A L + ++ ++ L + L P
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 409
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 121
+ + L + + + L P E + +
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSR 468
Score = 76.3 bits (188), Expect = 6e-15
Identities = 9/119 (7%), Positives = 24/119 (20%), Gaps = 14/119 (11%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ +A L + ++ ++ L + L P
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 121
+ L + + + L P E ++ +
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 400
Score = 76.3 bits (188), Expect = 6e-15
Identities = 12/119 (10%), Positives = 27/119 (22%), Gaps = 14/119 (11%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G + +A L + ++ S ++ L + L P
Sbjct: 248 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP 307
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 121
+ G L + + + L P E ++ +
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 366
Score = 75.9 bits (187), Expect = 8e-15
Identities = 9/99 (9%), Positives = 22/99 (22%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ + +A L + ++ + L +
Sbjct: 109 IASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHG 168
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
L P+ + G L + + + L P
Sbjct: 169 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 207
Score = 75.6 bits (186), Expect = 1e-14
Identities = 9/96 (9%), Positives = 21/96 (21%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ +A L + ++ ++ L + L P
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 205
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ G L + + + L P
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 241
Score = 75.2 bits (185), Expect = 1e-14
Identities = 9/96 (9%), Positives = 21/96 (21%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G + +A L + ++ ++ L + L P
Sbjct: 214 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 273
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ L + + + L P
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309
Score = 74.4 bits (183), Expect = 3e-14
Identities = 8/96 (8%), Positives = 21/96 (21%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ +A L + ++ ++ L + L P
Sbjct: 78 HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 137
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + L + + + L P
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ 173
Score = 74.0 bits (182), Expect = 3e-14
Identities = 11/122 (9%), Positives = 28/122 (22%), Gaps = 14/122 (11%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ G + +A L + ++ ++ L +
Sbjct: 313 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG 372
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAI 119
L P+ + G L + + + L P E ++ +
Sbjct: 373 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLL 432
Query: 120 KD 121
Sbjct: 433 PV 434
Score = 62.1 bits (151), Expect = 2e-10
Identities = 13/126 (10%), Positives = 33/126 (26%), Gaps = 5/126 (3%)
Query: 362 KKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR-----NPDDPKYYS 416
+ + + P++ + + +AV + A+ P+ +
Sbjct: 17 EALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIA 76
Query: 417 NRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476
+ L L L P+ + Q ++ + + +A L
Sbjct: 77 SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 136
Query: 477 ASNAEA 482
A
Sbjct: 137 PEQVVA 142
Score = 61.3 bits (149), Expect = 4e-10
Identities = 12/100 (12%), Positives = 26/100 (26%), Gaps = 5/100 (5%)
Query: 20 AALQANNFIEAIEAYSEA-----IKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL 74
A +EA+ A+ A + L + ++ ++ L + L
Sbjct: 42 AKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGL 101
Query: 75 KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
P + L + + + L P
Sbjct: 102 TPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV 141
Score = 56.3 bits (136), Expect = 2e-08
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 1/95 (1%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
G AL+A A E ++LD + + R A E + ++L P+
Sbjct: 12 GARALEAL-LTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPE 70
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ L + + + L P
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 105
Score = 53.6 bits (129), Expect = 1e-07
Identities = 10/105 (9%), Positives = 22/105 (20%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
+ A + + + + R A
Sbjct: 4 HHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGA 63
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L L P+ + Q ++ + + +A L A
Sbjct: 64 PLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 108
Score = 39.7 bits (93), Expect = 0.003
Identities = 6/68 (8%), Positives = 17/68 (25%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
+ + L +A P + + + + + +
Sbjct: 418 HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALT 477
Query: 313 DFKLIAKA 320
+ L+A A
Sbjct: 478 NDHLVALA 485
Score = 36.3 bits (84), Expect = 0.025
Identities = 12/69 (17%), Positives = 20/69 (28%)
Query: 44 NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYE 103
+H S A A E A E + L +++G + + +
Sbjct: 3 HHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTG 62
Query: 104 EGLKLDPNN 112
L L P
Sbjct: 63 APLNLTPEQ 71
Score = 31.3 bits (71), Expect = 1.0
Identities = 9/73 (12%), Positives = 20/73 (27%)
Query: 410 DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAY 469
+ ++ + A + + L+LD L ++G + +
Sbjct: 2 EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALT 61
Query: 470 EKALELDASNAEA 482
L L A
Sbjct: 62 GAPLNLTPEQVVA 74
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 107 bits (270), Expect = 9e-26
Identities = 41/275 (14%), Positives = 90/275 (32%), Gaps = 30/275 (10%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
E G + K+ + + A+ DP D + E + I + +E +
Sbjct: 70 EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ 129
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEK-- 369
+ KAL + Y ++A + + ++ P+ + L+ + +
Sbjct: 130 PNN---LKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMS 184
Query: 370 KAYIDPVKAEEAKE--------------------RGNELFKNGKYADAVKEYTEAINRNP 409
K+ +D E KE G +G++ A+ + A+ P
Sbjct: 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP 244
Query: 410 DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAY 469
+D ++ A + ++ L++ P F++ G + +A+ +
Sbjct: 245 EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNF 304
Query: 470 EKALELDASNAEAVEGYRQCSIAVSSNPEEVRKRA 504
AL L + + A+S N + A
Sbjct: 305 LTALSLQRKSRNQ---QQVPHPAISGNIWAALRIA 336
Score = 87.4 bits (217), Expect = 8e-19
Identities = 28/189 (14%), Positives = 58/189 (30%), Gaps = 21/189 (11%)
Query: 295 KEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIR 354
E+++ E + +W+ +SE++ + +
Sbjct: 3 MEFERAKAAVESDTEFWDKMQ----------------AEWEEM--ARRNWISENQEAQNQ 44
Query: 355 TLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKY 414
+S EK + + D A E G + K G + AI ++P D +
Sbjct: 45 VTVSASEKGYYFHTENPFKD---WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEA 101
Query: 415 YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474
+ + + + CL+L P LK + Q A +A + ++
Sbjct: 102 WQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK 161
Query: 475 LDASNAEAV 483
+ V
Sbjct: 162 QNPKYKYLV 170
Score = 80.9 bits (200), Expect = 1e-16
Identities = 29/147 (19%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G + F AI+A++ A+ + ++ L++ A A E+A+E + + ++P
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ--------MKEAIKDVRNQEMN 128
+ + G + LG Y+E++S + L L + + I ++
Sbjct: 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS 338
Query: 129 DMNRGDPF-ANLFSDPNIFVQ-LQLDP 153
M++ + F A D ++ ++ LDP
Sbjct: 339 LMDQPELFQAANLGDLDVLLRAFNLDP 365
Score = 76.6 bits (189), Expect = 3e-15
Identities = 31/255 (12%), Positives = 65/255 (25%), Gaps = 60/255 (23%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
L + ++A ++ +P N + + +
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198
Query: 313 DFKLIAKALQR------------IGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360
+ +A + +G + ++ A F +++
Sbjct: 199 LYL---EAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT-------------- 241
Query: 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAA 420
++ E+ + G L + +AV+ YT A+ P + N
Sbjct: 242 ---VRPEDYSLWNR---------LGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGI 289
Query: 421 CYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG------------MQQ------- 461
L A+ + + T L L K + G M Q
Sbjct: 290 SCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAA 349
Query: 462 QSKAIDAYEKALELD 476
+D +A LD
Sbjct: 350 NLGDLDVLLRAFNLD 364
Score = 74.7 bits (184), Expect = 1e-14
Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKL--DGTNHILFSNRSAAFAKEGNYEKALEDAEKT 71
+ + + ++ E Y EA D + L + F G + +A++
Sbjct: 180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239
Query: 72 ISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
++++P+ ++R G+ L+ R +E++ Y L++ P
Sbjct: 240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF 280
Score = 73.6 bits (181), Expect = 3e-14
Identities = 14/98 (14%), Positives = 36/98 (36%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+G L+ + I AI D + + A+ N + A+ ++ + L+P
Sbjct: 71 EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
+ K + + +++ + +K +P +
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKY 168
Score = 70.9 bits (174), Expect = 2e-13
Identities = 15/97 (15%), Positives = 29/97 (29%)
Query: 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK 75
+ A + + Y + + KEG+ + E I
Sbjct: 36 SENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD 95
Query: 76 PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
P + + G + + +I + L+L PNN
Sbjct: 96 PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN 132
Score = 68.5 bits (168), Expect = 1e-12
Identities = 14/95 (14%), Positives = 27/95 (28%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G + N AI A ++L N + ++ + + A E + I P
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN 111
+ K + R +S +
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199
Score = 56.2 bits (136), Expect = 1e-08
Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 12/111 (10%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ ++ +A EA IK + L N+ + K+ D+ +K
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198
Query: 77 D------------WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQM 115
P + G G + +I + L + P + +
Sbjct: 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL 249
Score = 49.7 bits (119), Expect = 1e-06
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 8/97 (8%)
Query: 24 ANNFIEAIEAYSEAIKLDGTNHILFSNRSA----AFAKEGNYEKALEDAEKTISLKPDWP 79
A F A A + + + + +E + + +EK + P
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 80 ----KGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
G +G G +I E + DP +
Sbjct: 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD 98
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 105 bits (265), Expect = 5e-25
Identities = 37/233 (15%), Positives = 74/233 (31%), Gaps = 16/233 (6%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
E G ++ + A+ + AV+ DP + + E ++ I + +E +
Sbjct: 69 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 128
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
D AL + + + A + P L++ E+
Sbjct: 129 PDN---QTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGL-- 181
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD--DPKYYSNRAACYTKLAAFD 429
+K L + + + + + A+ +P DP + +D
Sbjct: 182 -------GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD 234
Query: 430 LGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ L + P W + G L Q +A+ AY +ALEL +
Sbjct: 235 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 287
Score = 85.9 bits (213), Expect = 2e-18
Identities = 28/190 (14%), Positives = 57/190 (30%), Gaps = 18/190 (9%)
Query: 302 EQYIQKIENRADFKL-IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360
E+ IE+ DF + L+ + + W + +
Sbjct: 4 ERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDY--------------DDLTSATY 49
Query: 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAA 420
+K + EE+ D + E G + G +AV + A+ ++P + +
Sbjct: 50 DKGYQFEEENPLRD---HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGT 106
Query: 421 CYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480
+ L + CL+L P + Q +A + L + A
Sbjct: 107 TQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 166
Query: 481 EAVEGYRQCS 490
V + +
Sbjct: 167 HLVTPAEEGA 176
Score = 77.8 bits (192), Expect = 1e-15
Identities = 26/249 (10%), Positives = 56/249 (22%), Gaps = 53/249 (21%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDP---------------TDITFQNNIAAVYFERKEY 297
L + +A + + P + I +
Sbjct: 138 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF 197
Query: 298 DQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLI 357
+ E ++ + + +G + ++ A F ++S
Sbjct: 198 LEVKELFLAAVRLDPTS-IDPDVQCGLGVLFNLSGEYDKAVDCFTAALS----------- 245
Query: 358 SEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSN 417
++ + + G L + +AV Y A+ P + N
Sbjct: 246 ------VRPNDYLLWNK---------LGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 290
Query: 418 RAACYTKLAAFDLGLKDCETCLKLDPKF-----------LKGWIRKGKILQGMQQQSKAI 466
L A ++ L + K W L + Q
Sbjct: 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350
Query: 467 DAYEKALEL 475
A + L
Sbjct: 351 AADARDLST 359
Score = 77.8 bits (192), Expect = 1e-15
Identities = 23/255 (9%), Positives = 59/255 (23%), Gaps = 50/255 (19%)
Query: 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDP----TDITFQNNIAAVYFERKEYDQCIEQY 304
+++ + + A Y+K +F+ D + + + +
Sbjct: 28 AKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87
Query: 305 IQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKI 364
++ +A Q +G + E A + +
Sbjct: 88 EAAVQQDPKH---MEAWQYLGTTQAENEQELLAISALRRCLE------------------ 126
Query: 365 KEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYT- 423
+ P A + + + P +
Sbjct: 127 --------LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG 178
Query: 424 --------------KLAAFDLGLKDCETCLKLDPKFL--KGWIRKGKILQGMQQQSKAID 467
+ F + ++LDP + G + + KA+D
Sbjct: 179 AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD 238
Query: 468 AYEKALELDASNAEA 482
+ AL + ++
Sbjct: 239 CFTAALSVRPNDYLL 253
Score = 77.8 bits (192), Expect = 1e-15
Identities = 16/98 (16%), Positives = 45/98 (45%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G + + +A++ ++ A+ + +++L++ A A E+A+ + + L+P
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
+ + G + LG ++E++ + E L + +
Sbjct: 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320
Score = 75.1 bits (185), Expect = 8e-15
Identities = 14/98 (14%), Positives = 33/98 (33%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+G LQ + A+ + A++ D + + A+ A+ + + LKP
Sbjct: 70 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 129
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
D + + +++ + L+ P
Sbjct: 130 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH 167
Score = 73.1 bits (180), Expect = 4e-14
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNH--ILFSNRSAAFAKEGNYEKALEDAEKTISL 74
+ L + F+E E + A++LD T+ + F G Y+KA++ +S+
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246
Query: 75 KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+P+ +++ G+ L+ + +E+++ Y L+L P
Sbjct: 247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 284
Score = 67.8 bits (166), Expect = 2e-12
Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 5/117 (4%)
Query: 2 ENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFS----NRSAAFAK 57
+ LQ+ + E++ + + L + Y + + + N + +
Sbjct: 18 DKLQAELEEMAKRDAEAHPWLSDYDD-LTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ 76
Query: 58 EGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
EG+ A+ E + P + + G+ + + +IS L+L P+N+
Sbjct: 77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT 133
Score = 67.0 bits (164), Expect = 4e-12
Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 15/111 (13%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G + + AI A ++L N + +F E +A E + P
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163
Query: 77 DWPKGYS---------------RKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + R +L + E + ++LDP +
Sbjct: 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS 214
Score = 57.4 bits (139), Expect = 5e-09
Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 11/101 (10%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G N EA+ AY A++L N + G + +A+E + ++++
Sbjct: 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316
Query: 77 DWP-----------KGYSRKGSALSYLGRYKESISTYEEGL 106
+S ALS LG+ + L
Sbjct: 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 94.5 bits (235), Expect = 6e-24
Identities = 32/62 (51%), Positives = 45/62 (72%)
Query: 494 SSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIASKIQKLVNSG 553
+ PEE +RAM DPEV I++DP M+ IL+Q Q +P AL +H+KNPE+ KIQ L+ +G
Sbjct: 6 NETPEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQTLIAAG 65
Query: 554 LI 555
+I
Sbjct: 66 II 67
Score = 30.9 bits (70), Expect = 0.15
Identities = 9/44 (20%), Positives = 23/44 (52%)
Query: 152 DPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLL 195
DP + DP ++++ Q++P+ + +K+P + + L+
Sbjct: 19 DPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQTLI 62
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 94.4 bits (235), Expect = 8e-23
Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 23/137 (16%)
Query: 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAIN------------------R 407
E++K E +++GNELF Y +A+ Y +A+
Sbjct: 4 EDDKLK-----SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVEL 58
Query: 408 NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAID 467
+ + Y+N + CY + + LK + K R+ K + +A +
Sbjct: 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEE 118
Query: 468 AYEKALELDASNAEAVE 484
+ L + A V
Sbjct: 119 DLKLLLRNHPAAASVVA 135
Score = 84.0 bits (208), Expect = 3e-19
Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 20/151 (13%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAI------------------KLDGTNHILFSNR 51
V L+ KGN ++ EAI+AY +A+ +LD N L++N
Sbjct: 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANM 69
Query: 52 SAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN 111
S + G+ +A E + + + + K R+ A + E+ + L+ P
Sbjct: 70 SQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129
Query: 112 NEQMKEAIKDVRNQEMNDMNRGD--PFANLF 140
+ + + + ++ +F
Sbjct: 130 AASVVAREMKIVTERRAEKKADSRVTYSKMF 160
Score = 68.6 bits (168), Expect = 7e-14
Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 30/160 (18%)
Query: 239 NLTDEQR--SAKKEKELGNEAYKKKNFEEALAHYNKAV------------------EFDP 278
+ ++ + S + ++ GNE + +K+++EA+ Y A+ E D
Sbjct: 1 SNAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDR 60
Query: 279 TDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAK 338
+I N++ Y + + E + ++ KAL R A+
Sbjct: 61 KNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETN---EKALFRRAKARIAAWKLDEAE 117
Query: 339 VYFEK------SMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
+ + + E++ +++E + K + + Y
Sbjct: 118 EDLKLLLRNHPAAASVVAREMK-IVTERRAEKKADSRVTY 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 95.2 bits (237), Expect = 9e-23
Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 16/143 (11%)
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDP----------------KYYSNRAA 420
A + KE GNE FK + +A+ +Y EA++ N A
Sbjct: 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96
Query: 421 CYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480
CY K + + LK+D +K + G +A + KA L+ +N
Sbjct: 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 156
Query: 481 EAVEGYRQCSIAVSSNPEEVRKR 503
+ Y C + ++ +
Sbjct: 157 DIRNSYELCVNKLKEARKKDKLT 179
Score = 84.1 bits (208), Expect = 8e-19
Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 19/151 (12%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH----------------ILFSNRSA 53
+K++GN + N EAI Y EA+ N +
Sbjct: 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96
Query: 54 AFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNE 113
+ K +Y KA++ A K + + + K + G A Y G +E+ + L+PNN
Sbjct: 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 156
Query: 114 QMKEAIKDVRNQEMNDMNRGD--PFANLFSD 142
++ + + ++ + + D F +F
Sbjct: 157 DIRNSYELCV-NKLKEARKKDKLTFGGMFDK 186
Score = 74.0 bits (182), Expect = 2e-15
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 22/157 (14%)
Query: 233 AEPEDKNLTDEQR--SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ------ 284
A+ + TDE++ SA KE GNE +KK EA+ Y +A++F +
Sbjct: 22 AKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD 81
Query: 285 ----------NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDW 334
N+A Y + K+Y + I+ + ++ + KAL ++G
Sbjct: 82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN---VKALYKLGVANMYFGFL 138
Query: 335 KNAKVYFEKSMSEH-RTPEIRTLISEMEKKIKEEEKK 370
+ AK K+ S + +IR K+KE KK
Sbjct: 139 EEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK 175
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 94.9 bits (237), Expect = 2e-22
Identities = 33/224 (14%), Positives = 69/224 (30%), Gaps = 19/224 (8%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LG + Y ++ AL + +A++ +P D +A + + +E +
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
+ + Y + + + + + +S ++ +
Sbjct: 71 RY---LGGYMVLSEAYVALYRQAEDRERGKGYLEQ--------ALSVLKDAER------- 112
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
++P A +RG G+ A +A+ P+ S A Y + D L
Sbjct: 113 VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEAL 171
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476
L+ PK L +R L + +A A
Sbjct: 172 AQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215
Score = 75.3 bits (186), Expect = 1e-15
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 1/95 (1%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+G +A + +A+ L+ + S + + G ++AL K + P
Sbjct: 124 RGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP 182
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN 111
R SAL G+ +E+ +
Sbjct: 183 KDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217
Score = 74.1 bits (183), Expect = 3e-15
Identities = 25/201 (12%), Positives = 55/201 (27%), Gaps = 23/201 (11%)
Query: 284 QNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEK 343
+ + YD + + + ++ +AL + K+ A +
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKENPQD---PEALYWLARTQLKLGLVNPALENGKT 64
Query: 344 SMSEHRTPEIRTLISEMEKKIKEEEKKAYID--PVKAEEAKERGNELFKNGKYADAVKEY 401
++ Y+ ++ + G A+
Sbjct: 65 LVA-----------------RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVL 107
Query: 402 TEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQ 461
+A NP + R Y L D + L L+ + ++ M +
Sbjct: 108 KDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGR 166
Query: 462 QSKAIDAYEKALELDASNAEA 482
+A+ Y KALE + +
Sbjct: 167 LDEALAQYAKALEQAPKDLDL 187
Score = 73.3 bits (181), Expect = 5e-15
Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 11/108 (10%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAK-----------EGNYEKAL 65
L+ A+E + + S A+ +G E+AL
Sbjct: 45 LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104
Query: 66 EDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNE 113
+ + P + + ++G + LG ++ ++ ++ L L+ E
Sbjct: 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPE 152
Score = 73.3 bits (181), Expect = 5e-15
Identities = 20/202 (9%), Positives = 49/202 (24%), Gaps = 41/202 (20%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE-----------RKEYDQCI 301
L K AL + V P + ++ Y + +Q +
Sbjct: 45 LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104
Query: 302 EQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEME 361
+ A + G Y + + A+ +++++
Sbjct: 105 SVLKDAERVNPRY---APLHLQRGLVYALLGERDKAEASLKQALA--------------- 146
Query: 362 KKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAAC 421
++ E G+ +A+ +Y +A+ + P D A+
Sbjct: 147 -----------LED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA 194
Query: 422 YTKLAAFDLGLKDCETCLKLDP 443
+ +
Sbjct: 195 LLLKGKAEEAARAAALEHHHHH 216
Score = 71.8 bits (177), Expect = 2e-14
Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 11/107 (10%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G + A+ + A+K + + + K G ALE+ + ++ P
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70
Query: 77 DWPKGYSRKGSALSYL-----------GRYKESISTYEEGLKLDPNN 112
+ GY A L G ++++S ++ +++P
Sbjct: 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY 117
Score = 71.8 bits (177), Expect = 2e-14
Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Query: 13 LLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTI 72
L + + +A+ +A +++ L R +A G +KA ++ +
Sbjct: 86 LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQAL 145
Query: 73 SLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+L+ P+ S +GR E+++ Y + L+ P +
Sbjct: 146 ALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKD 184
Score = 57.9 bits (141), Expect = 8e-10
Identities = 10/63 (15%), Positives = 18/63 (28%)
Query: 50 NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLD 109
G Y+ AL E+ + P P+ LG ++ + +
Sbjct: 10 RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART 69
Query: 110 PNN 112
P
Sbjct: 70 PRY 72
Score = 56.4 bits (137), Expect = 3e-09
Identities = 21/163 (12%), Positives = 40/163 (24%), Gaps = 30/163 (18%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
++ + K E+AL+ A +P VY E D+ Q
Sbjct: 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143
Query: 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKE 366
+ D + + Y M A + K++
Sbjct: 144 ALALE-DT---PEIRSALAELYLSMGRLDEALAQYAKALE-------------------- 179
Query: 367 EEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP 409
P + + L GK +A + + +
Sbjct: 180 ------QAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216
Score = 51.4 bits (124), Expect = 1e-07
Identities = 8/74 (10%), Positives = 20/74 (27%)
Query: 409 PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDA 468
+ L +D L E LK +P+ + + + + A++
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 469 YEKALELDASNAEA 482
+ +
Sbjct: 62 GKTLVARTPRYLGG 75
Score = 36.7 bits (86), Expect = 0.011
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 76 PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ R G L LGRY +++ +E LK +P +
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQD 38
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 100 bits (249), Expect = 4e-22
Identities = 21/230 (9%), Positives = 47/230 (20%), Gaps = 29/230 (12%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
+ + L +A P + + + + + Q
Sbjct: 198 NNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPP 257
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
D A+ + +E + ++
Sbjct: 258 DQ---VVAIASNIGGKQALETVQRLLPVLCQAHG-------------------------- 288
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ P + G + +A PD ++ L L
Sbjct: 289 LTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLL 348
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L P + G Q ++ + + +A L A
Sbjct: 349 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 398
Score = 94.3 bits (234), Expect = 2e-20
Identities = 23/240 (9%), Positives = 55/240 (22%), Gaps = 15/240 (6%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
+ ++ L +A P + + + + Q
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTP 528
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM----------EK 362
D A+ G + +E + ++ TP+ I+ ++
Sbjct: 529 DQ---VVAIASNGGGKQALETVQRLLPVLCQAHGL--TPDQVVAIASNGGGKQALETVQR 583
Query: 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422
+ + + V+ + +A P ++
Sbjct: 584 LLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGK 643
Query: 423 TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L L L P + G Q ++ + + +A L A
Sbjct: 644 QALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVA 703
Score = 93.6 bits (232), Expect = 5e-20
Identities = 19/231 (8%), Positives = 46/231 (19%), Gaps = 30/231 (12%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
+ + L +A P + + + + + Q
Sbjct: 265 SNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLT 324
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
D A+ + +E + ++
Sbjct: 325 PDQ---VVAIASHDGGKQALETVQRLLPVLCQAHG------------------------- 356
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
+ P + G + +A PD ++ L
Sbjct: 357 -LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG-KQALETVQRL 414
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L L P + Q ++ + + + L + A
Sbjct: 415 LPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVA 465
Score = 91.2 bits (226), Expect = 3e-19
Identities = 21/230 (9%), Positives = 47/230 (20%), Gaps = 30/230 (13%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
+ + L +A P + + + + + Q
Sbjct: 232 HDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 291
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
D A+ G + +E + ++
Sbjct: 292 DQ---VVAIASHGGGKQALETVQRLLPVLCQAHG-------------------------- 322
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ P + + +A PD ++ L L
Sbjct: 323 LTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 382
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L P + G Q ++ + + +A L A
Sbjct: 383 PVLCQAHGLTPDQVVAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVA 431
Score = 90.9 bits (225), Expect = 3e-19
Identities = 18/231 (7%), Positives = 46/231 (19%), Gaps = 29/231 (12%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
G + + L +A + + + + + Q
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 629
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
A+ + +E + ++
Sbjct: 630 PAQ---VVAIASHDGGKQALETVQRLLPVLCQAHG------------------------- 661
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
+ P + G + +A + ++ L
Sbjct: 662 -LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRL 720
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L L P + G Q ++ + + +A L + A
Sbjct: 721 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVA 771
Score = 88.9 bits (220), Expect = 2e-18
Identities = 19/238 (7%), Positives = 52/238 (21%), Gaps = 10/238 (4%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
G + + L +A P + + + + + Q
Sbjct: 299 SHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 358
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS-------EHRTPEIRTLISEMEKKI 364
D A+ G + +E + ++ + + + +++ +
Sbjct: 359 PDQ---VVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLL 415
Query: 365 KEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK 424
+ + P + + + P ++
Sbjct: 416 PVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQA 475
Query: 425 LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L L L P + Q + + + +A L A
Sbjct: 476 LETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVA 533
Score = 88.5 bits (219), Expect = 2e-18
Identities = 18/230 (7%), Positives = 44/230 (19%), Gaps = 29/230 (12%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
G + + L +A P + + + + + Q
Sbjct: 537 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 596
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
A+ + +E + ++
Sbjct: 597 VQ---VVAIASNIGGKQALETVQRLLPVLCQAHGLT------------------------ 629
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
P + + +A PD ++ L L
Sbjct: 630 --PAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 687
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L + + Q ++ + + +A L A
Sbjct: 688 PVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVA 737
Score = 79.3 bits (195), Expect = 1e-15
Identities = 22/231 (9%), Positives = 48/231 (20%), Gaps = 30/231 (12%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
G + + L +A P + + + + + Q
Sbjct: 367 SNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLT 425
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
D A+ + +E + ++
Sbjct: 426 PDQ---VVAIASHDGGKQALETVQRLLPVLCQTHG------------------------- 457
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
+ P + + +A PD ++ LA
Sbjct: 458 -LTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRL 516
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L L P + G Q ++ + + +A L A
Sbjct: 517 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 567
Score = 76.6 bits (188), Expect = 1e-14
Identities = 18/220 (8%), Positives = 42/220 (19%), Gaps = 29/220 (13%)
Query: 263 FEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322
+A ++ D + V + + A+
Sbjct: 140 LTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQ---VVAIA 196
Query: 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAK 382
+ +E + ++ + P +
Sbjct: 197 SNNGGKQALETVQRLLPVLCQAHG--------------------------LTPAQVVAIA 230
Query: 383 ERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442
+ +A PD ++ L L L
Sbjct: 231 SHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 290
Query: 443 PKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
P + G Q ++ + + +A L A
Sbjct: 291 PDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVA 330
Score = 73.1 bits (179), Expect = 1e-13
Identities = 11/99 (11%), Positives = 25/99 (25%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ G + +A L + ++ ++ L +
Sbjct: 297 IASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHG 356
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
L PD + G L + + + L P+
Sbjct: 357 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395
Score = 72.4 bits (177), Expect = 2e-13
Identities = 10/102 (9%), Positives = 24/102 (23%)
Query: 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEK 70
V + + +A L + ++ ++ L +
Sbjct: 192 VVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQ 251
Query: 71 TISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
L PD + L + + + L P+
Sbjct: 252 AHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ 293
Score = 72.0 bits (176), Expect = 2e-13
Identities = 10/101 (9%), Positives = 24/101 (23%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ + +A L + ++ ++ L +
Sbjct: 229 IASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHG 288
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
L PD + G L + + + L P+
Sbjct: 289 LTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVV 329
Score = 71.6 bits (175), Expect = 4e-13
Identities = 9/99 (9%), Positives = 23/99 (23%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ + +A L + ++ ++ L +
Sbjct: 263 IASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHG 322
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
L PD + L + + + L P+
Sbjct: 323 LTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 361
Score = 70.8 bits (173), Expect = 6e-13
Identities = 10/98 (10%), Positives = 24/98 (24%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ + +A L + ++ ++ L + L P
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTP 528
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
D + G L + + + L P+
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566
Score = 70.1 bits (171), Expect = 1e-12
Identities = 15/241 (6%), Positives = 50/241 (20%), Gaps = 15/241 (6%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
+ + L +A P + + + + + Q
Sbjct: 638 SHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 697
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE----------IRTLISEME 361
+ A+ + +E + ++ TP+ + + ++
Sbjct: 698 QEQ---VVAIASNNGGKQALETVQRLLPVLCQAHG--LTPDQVVAIASNGGGKQALETVQ 752
Query: 362 KKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAAC 421
+ + + + P + + + ++
Sbjct: 753 RLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGG 812
Query: 422 YTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481
L L L + Q ++ + + + L
Sbjct: 813 KQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVV 872
Query: 482 A 482
A
Sbjct: 873 A 873
Score = 68.5 bits (167), Expect = 3e-12
Identities = 7/96 (7%), Positives = 21/96 (21%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ +A L + ++ ++ L + L
Sbjct: 639 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 698
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + L + + + L P+
Sbjct: 699 EQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQ 734
Score = 67.4 bits (164), Expect = 7e-12
Identities = 9/96 (9%), Positives = 22/96 (22%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G + +A L + ++ ++ L + L P
Sbjct: 571 NGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 630
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ L + + + L P+
Sbjct: 631 AQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666
Score = 67.0 bits (163), Expect = 1e-11
Identities = 9/96 (9%), Positives = 21/96 (21%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ +A L + ++ ++ L + L P
Sbjct: 605 NIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 664
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
D + G L + + + L
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQ 700
Score = 65.8 bits (160), Expect = 2e-11
Identities = 9/98 (9%), Positives = 21/98 (21%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ +A L + ++ ++ L + L P
Sbjct: 503 NIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 562
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
D + G L + + + L
Sbjct: 563 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVV 600
Score = 65.1 bits (158), Expect = 3e-11
Identities = 8/99 (8%), Positives = 21/99 (21%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ G + +A L + ++ ++ L +
Sbjct: 534 IASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 593
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
L + L + + + L P
Sbjct: 594 LTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632
Score = 64.3 bits (156), Expect = 7e-11
Identities = 11/96 (11%), Positives = 24/96 (25%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G + +A L + ++ + ++ L + L P
Sbjct: 673 NGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 732
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
D + G L + + + L P
Sbjct: 733 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQ 768
Score = 63.5 bits (154), Expect = 1e-10
Identities = 10/98 (10%), Positives = 24/98 (24%), Gaps = 1/98 (1%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ +A L + ++ ++ L + L P
Sbjct: 334 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 393
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
D + G + L + + + L P+
Sbjct: 394 DQVVAIASNGGKQA-LETVQRLLPVLCQAHGLTPDQVV 430
Score = 61.6 bits (149), Expect = 5e-10
Identities = 8/96 (8%), Positives = 21/96 (21%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ + L + ++ ++ L + L P
Sbjct: 435 HDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTP 494
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
D + L + + + L P+
Sbjct: 495 DQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ 530
Score = 60.4 bits (146), Expect = 1e-09
Identities = 11/90 (12%), Positives = 26/90 (28%), Gaps = 5/90 (5%)
Query: 28 IEAIEAYSEA-----IKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGY 82
+EA+ A A + L + ++ + ++ L + L P
Sbjct: 170 MEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAI 229
Query: 83 SRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ L + + + L P+
Sbjct: 230 ASHDGGKQALETMQRLLPVLCQAHGLPPDQ 259
Score = 59.3 bits (143), Expect = 3e-09
Identities = 9/86 (10%), Positives = 23/86 (26%)
Query: 29 EAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSA 88
+ +A L + ++ ++ L +T L P +
Sbjct: 413 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGG 472
Query: 89 LSYLGRYKESISTYEEGLKLDPNNEQ 114
L ++ + + L P+
Sbjct: 473 KQALETVQQLLPVLCQAHGLTPDQVV 498
Score = 57.3 bits (138), Expect = 1e-08
Identities = 17/239 (7%), Positives = 51/239 (21%), Gaps = 11/239 (4%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
G + + L +A + + + + + Q
Sbjct: 673 NGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 732
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS--------EHRTPEIRTLISEMEKKI 364
D A+ G + +E + ++ + + +++ +
Sbjct: 733 DQ---VVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLL 789
Query: 365 KEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK 424
+ + + + +A D ++
Sbjct: 790 PVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQA 849
Query: 425 LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483
L L L P + Q ++ + + + L A+
Sbjct: 850 LETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAI 908
Score = 55.8 bits (134), Expect = 3e-08
Identities = 7/101 (6%), Positives = 20/101 (19%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ + +A L + ++ ++ L +
Sbjct: 704 IASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 763
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
L P + L + + + L
Sbjct: 764 LTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVV 804
Score = 54.3 bits (130), Expect = 9e-08
Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 1/97 (1%)
Query: 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK 75
G AL+A +A E ++LD + + R A E + ++L
Sbjct: 130 WSGARALEAL-LTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLT 188
Query: 76 PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
P + L + + + L P
Sbjct: 189 PAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQ 225
Score = 46.6 bits (110), Expect = 2e-05
Identities = 17/105 (16%), Positives = 38/105 (36%)
Query: 2 ENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNY 61
L L + L + A +A+E + + H L ++ A A
Sbjct: 787 RLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGG 846
Query: 62 EKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGL 106
++ALE ++ + + + A++ K+++ T + L
Sbjct: 847 KQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLL 891
Score = 46.2 bits (109), Expect = 3e-05
Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 6/119 (5%)
Query: 2 ENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEG-- 59
L L + L D+ A +A+E + + +H L ++ A A G
Sbjct: 855 RLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGK 914
Query: 60 ----NYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
++ L + L PD + L + + + L PN
Sbjct: 915 QALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVV 973
Score = 45.0 bits (106), Expect = 6e-05
Identities = 7/96 (7%), Positives = 20/96 (20%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G + +A L + ++ ++ L + L
Sbjct: 741 NGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 800
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ L + + + L +
Sbjct: 801 AQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQ 836
Score = 44.3 bits (104), Expect = 1e-04
Identities = 12/102 (11%), Positives = 24/102 (23%)
Query: 381 AKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440
K+ DA + + + + R A L
Sbjct: 127 GKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLN 186
Query: 441 LDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L P + Q ++ + + +A L + A
Sbjct: 187 LTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVA 228
Score = 43.9 bits (103), Expect = 1e-04
Identities = 28/276 (10%), Positives = 67/276 (24%), Gaps = 25/276 (9%)
Query: 258 YKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLI 317
++AL + + D Q +E + + +
Sbjct: 773 ASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGL 832
Query: 318 ----AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYI 373
A+ + +E + + + + K+ E ++
Sbjct: 833 TQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLP 892
Query: 374 DPVKAEEAK-ERGNELFKNGK------YADAVKEYTEAINRNPDDPKYYSNRAACYTKLA 426
+ ++ + NG + + PD ++ + L
Sbjct: 893 VLCQDHGLTLDQVVAIASNGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALE 952
Query: 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKAL------ELDA--- 477
L L P + G Q ++ + + AL L A
Sbjct: 953 TVQRLLPVLCQDHGLTPNQVVAIASNG-GKQALESIVAQLSRPDPALAALTNDHLVALAC 1011
Query: 478 -SNAEAVEGYRQCSIAVSSNPEEVRKRAMGDPEVQQ 512
A++ ++ + PE +R+ E
Sbjct: 1012 LGGRPAMDAVKK---GLPHAPELIRRVNRRIGERTS 1044
Score = 43.5 bits (102), Expect = 2e-04
Identities = 7/99 (7%), Positives = 21/99 (21%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ + + L + ++ ++ L +
Sbjct: 772 IASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHG 831
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
L D + L + + + L P+
Sbjct: 832 LTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQ 870
Score = 38.1 bits (88), Expect = 0.009
Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 3/101 (2%)
Query: 6 SLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKAL 65
+L V++ + G AL+ + + L + ++ S ++ L
Sbjct: 901 TLDQVVAIASNGGKQALET--VQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLL 958
Query: 66 EDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGL 106
+ L P+ + G + L +S + L
Sbjct: 959 PVLCQDHGLTPNQVVAIASNGGKQA-LESIVAQLSRPDPAL 998
Score = 34.6 bits (79), Expect = 0.093
Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 5/99 (5%)
Query: 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL 74
G AL+ + + L + ++ ++ L + L
Sbjct: 843 NIGGKQALET--VQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGL 900
Query: 75 KPDWPKG-YSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
D S G L + + + L P+
Sbjct: 901 TLDQVVAIASNGGKQA--LETVQRLLPVLCQDHGLTPDQ 937
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 88.3 bits (219), Expect = 8e-22
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 135 PFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKL-KDPRMMTTLSV 193
LF+DPN+ L+ +P+T + DP V + +++P + L DPR+MT ++
Sbjct: 5 GLTQLFADPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMAT 64
Query: 194 LLGVNMS 200
L+GV+++
Sbjct: 65 LMGVDLN 71
Score = 30.9 bits (70), Expect = 0.12
Identities = 8/43 (18%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 495 SNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHL 537
++P + +P+ ++++DP + L + +P+A+ L
Sbjct: 11 ADPNLIENLKK-NPKTSEMMKDPQLVAKLIGYKQNPQAIGQDL 52
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 90.6 bits (225), Expect = 1e-21
Identities = 18/120 (15%), Positives = 37/120 (30%)
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ E+ G ++ GK+ DA K + + D +Y+ AC L ++ L
Sbjct: 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQAL 72
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIA 492
+ +D + + + A + A L A+ +
Sbjct: 73 QSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132
Score = 76.7 bits (189), Expect = 7e-17
Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 10/122 (8%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
L G QA + +A + + LD + F A G YE+AL+
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN----------EQMKEAIKDVR 123
+ + P+ LG + S + L M EA+ +
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARK 140
Query: 124 NQ 125
++
Sbjct: 141 DR 142
Score = 69.8 bits (171), Expect = 2e-14
Identities = 15/123 (12%), Positives = 39/123 (31%), Gaps = 7/123 (5%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
LG Y+ +++A + D D + + A Y+Q ++ Y
Sbjct: 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS----EHRTPEIRTLISEMEKKIKEE 367
+ + C+ ++ D A+ F + + + + M + +
Sbjct: 83 INE---PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTAR 139
Query: 368 EKK 370
+ +
Sbjct: 140 KDR 142
Score = 54.4 bits (131), Expect = 4e-09
Identities = 13/160 (8%), Positives = 34/160 (21%), Gaps = 29/160 (18%)
Query: 268 AHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327
+ + ++ ++D + + A+ +G C
Sbjct: 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD---ARYFLGLGAC 61
Query: 328 YKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNE 387
+ + ++ A + +D +
Sbjct: 62 RQSLGLYEQALQSYSYGAL--------------------------MDINEPRFPFHAAEC 95
Query: 388 LFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAA 427
+ G A + A P + + A L A
Sbjct: 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135
Score = 53.6 bits (129), Expect = 7e-09
Identities = 12/80 (15%), Positives = 27/80 (33%)
Query: 33 AYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYL 92
+ L + G ++ A + + L + + G+ L
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65
Query: 93 GRYKESISTYEEGLKLDPNN 112
G Y++++ +Y G +D N
Sbjct: 66 GLYEQALQSYSYGALMDINE 85
Score = 35.5 bits (82), Expect = 0.013
Identities = 9/51 (17%), Positives = 14/51 (27%)
Query: 439 LKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
L L+ G + A ++ LD +A G C
Sbjct: 11 RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGAC 61
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 91.0 bits (227), Expect = 2e-21
Identities = 27/193 (13%), Positives = 61/193 (31%), Gaps = 29/193 (15%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
G K + +A+ + + D D+ ++ Y + D+ E + + +
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
D K +G Y +++ + A K
Sbjct: 74 DN---VKVATVLGLTYVQVQKYDLAVPLLIKVAE-------------------------- 104
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+P+ G L G++ +A+ + A+ P++ K + A Y ++ + L
Sbjct: 105 ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164
Query: 433 KDCETCLKLDPKF 445
+ +LD
Sbjct: 165 PHFKKANELDEGA 177
Score = 88.7 bits (221), Expect = 1e-20
Identities = 32/198 (16%), Positives = 54/198 (27%), Gaps = 29/198 (14%)
Query: 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
+ + + Y Q + Q + A +G Y K E+S
Sbjct: 12 RDKGISHAKAGRYSQAVMLLEQVYDADAFD---VDVALHLGIAYVKTGAVDRGTELLERS 68
Query: 345 MSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404
++ P + A G + KY AV +
Sbjct: 69 LA--------------------------DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKV 102
Query: 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK 464
NP + L FD + + L L P K + M + +
Sbjct: 103 AEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162
Query: 465 AIDAYEKALELDASNAEA 482
A+ ++KA ELD +
Sbjct: 163 ALPHFKKANELDEGASVE 180
Score = 81.7 bits (203), Expect = 3e-18
Identities = 17/96 (17%), Positives = 41/96 (42%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
KG + +A + +A+ + D + + + A+ K G ++ E E++++ P
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
D K + G + +Y ++ + + +P N
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109
Score = 81.3 bits (202), Expect = 5e-18
Identities = 21/96 (21%), Positives = 36/96 (37%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G A ++ E ++ N + + + + Y+ A+ K P
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
R G AL LGR+ E+I +++ L L PN
Sbjct: 108 INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143
Score = 80.6 bits (200), Expect = 9e-18
Identities = 15/96 (15%), Positives = 42/96 (43%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G +Q + A+ + + + N + A G +++A++ + + L+P
Sbjct: 82 LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ K + + +GR++E++ +++ +LD
Sbjct: 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177
Score = 66.3 bits (163), Expect = 8e-13
Identities = 17/165 (10%), Positives = 48/165 (29%), Gaps = 29/165 (17%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LG K + +++ P ++ + Y + ++YD + I+ E
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
R+G + + A F+ ++
Sbjct: 108 IN---FNVRFRLGVALDNLGRFDEAIDSFKIALG-------------------------- 138
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSN 417
+ P + + + + G++ +A+ + +A + +
Sbjct: 139 LRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELAL 183
Score = 64.8 bits (159), Expect = 3e-12
Identities = 14/75 (18%), Positives = 24/75 (32%)
Query: 38 IKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKE 97
+ D + + ++ + AK G Y +A+ E+ G A G
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Query: 98 SISTYEEGLKLDPNN 112
E L P+N
Sbjct: 61 GTELLERSLADAPDN 75
Score = 58.2 bits (142), Expect = 5e-10
Identities = 9/78 (11%), Positives = 23/78 (29%)
Query: 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK 464
+ + YY ++ + K + + E D + + G +
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Query: 465 AIDAYEKALELDASNAEA 482
+ E++L N +
Sbjct: 61 GTELLERSLADAPDNVKV 78
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 93.1 bits (232), Expect = 2e-21
Identities = 25/230 (10%), Positives = 54/230 (23%), Gaps = 13/230 (5%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
E G A +++A+ P N + + +D E + +E
Sbjct: 48 ERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 107
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS-EHRTPEI-----RTLISEMEKKIK 365
+ A G K A+ + P EK+ K
Sbjct: 108 PTY---NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAK 164
Query: 366 EEEKKAY-IDPVKAEEAKERGN---ELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAAC 421
E K+ + + + + + T+ + +
Sbjct: 165 EVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY 224
Query: 422 YTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEK 471
Y L D + + + L + Q + ++
Sbjct: 225 YLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
Score = 93.1 bits (232), Expect = 3e-21
Identities = 33/246 (13%), Positives = 60/246 (24%), Gaps = 37/246 (15%)
Query: 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVE----FDPTDITFQNNIAAVYFERKEYDQ 299
S +K + L E LA + + D +Y
Sbjct: 2 NTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRAL 61
Query: 300 CIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISE 359
+ Q + R D + +G + ++ A F+ +
Sbjct: 62 ARNDFSQALAIRPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLE------------- 105
Query: 360 MEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRA 419
+DP RG L+ G+ A + +P+DP
Sbjct: 106 -------------LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152
Query: 420 ACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK---AIDAYEKALELD 476
KL + + + K GW L + +Q+ L
Sbjct: 153 LAEQKLDEKQA-KEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLA 211
Query: 477 ASNAEA 482
+E
Sbjct: 212 EHLSET 217
Score = 81.2 bits (201), Expect = 3e-17
Identities = 21/96 (21%), Positives = 39/96 (40%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+G A +S+A+ + +F+ + GN++ A E + + L P
Sbjct: 49 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + +G AL Y GR K + + DPN+
Sbjct: 109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144
Score = 71.2 bits (175), Expect = 7e-14
Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 4/101 (3%)
Query: 18 GNAALQANNFIEAIEAYSEAIK----LDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ + + D L R + G A D + ++
Sbjct: 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
++PD P+ ++ G L+ G + + ++ L+LDP
Sbjct: 72 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 112
Score = 64.3 bits (157), Expect = 1e-11
Identities = 23/102 (22%), Positives = 32/102 (31%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G QA NF A EA+ ++LD T + NR A G + A +D P
Sbjct: 83 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEA 118
+ P A L + + K D
Sbjct: 143 NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIV 184
Score = 63.9 bits (156), Expect = 2e-11
Identities = 7/76 (9%), Positives = 23/76 (30%)
Query: 29 EAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSA 88
++ L + G+ + A + ++ +
Sbjct: 199 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLE 258
Query: 89 LSYLGRYKESISTYEE 104
LS LG+ ++ ++ ++
Sbjct: 259 LSLLGQDQDDLAESDQ 274
Score = 61.2 bits (149), Expect = 2e-10
Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 3/95 (3%)
Query: 21 ALQANNFIEAIEAYSEAIKLDGTNHILFSNRS---AAFAKEGNYEKALEDAEKTISLKPD 77
A Q + +A E + + ++ +++ E+ DA SL
Sbjct: 154 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 213
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ G LG + + ++ + + +N
Sbjct: 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248
Score = 42.7 bits (101), Expect = 2e-04
Identities = 7/55 (12%), Positives = 16/55 (29%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQK 307
LG + + A A + AV + + + + + Q+
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ 275
Score = 42.7 bits (101), Expect = 2e-04
Identities = 7/54 (12%), Positives = 18/54 (33%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEK 70
G L + A + A+ + N + + G + L ++++
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 94.2 bits (234), Expect = 3e-21
Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 20/171 (11%)
Query: 339 VYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVK-----AEEAKERGNELFKNGK 393
+ + + P L E+ K E+ K+++ + + KERG FK GK
Sbjct: 103 AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK 162
Query: 394 YADAVKEYTEAINRNPDDP---------------KYYSNRAACYTKLAAFDLGLKDCETC 438
Y A+ +Y + ++ + + N A C+ KL AF ++ C
Sbjct: 163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222
Query: 439 LKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
L+LD KG R+G+ + A ++K L+L +N A C
Sbjct: 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273
Score = 81.1 bits (200), Expect = 8e-17
Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 15/131 (11%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAI---------------KLDGTNHILFSNRSAA 54
+ +++K++G + + +A+ Y + + K N +
Sbjct: 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205
Query: 55 FAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
K + A+E K + L + KG SR+G A + ++ + + +++ L+L PNN+
Sbjct: 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265
Query: 115 MKEAIKDVRNQ 125
K + + +
Sbjct: 266 AKTQLAVCQQR 276
Score = 74.9 bits (184), Expect = 7e-15
Identities = 31/199 (15%), Positives = 76/199 (38%), Gaps = 29/199 (14%)
Query: 231 KPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---------- 280
K E + N ++ + KE G +K+ +++AL Y K V + +
Sbjct: 131 KAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQK 190
Query: 281 -----ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWK 335
+ N+A + + + + IE + +E ++ K L R G + + D++
Sbjct: 191 AQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN---EKGLSRRGEAHLAVNDFE 247
Query: 336 NAKVYFEKSMS-EHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394
A+ F+K + +T ++ +++I+ + + K+ +F+
Sbjct: 248 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR----------EKKLYANMFERLAE 297
Query: 395 ADAVKEYTEAINRNPDDPK 413
+ + + +P D +
Sbjct: 298 EENKAKAEASSGDHPTDTE 316
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 92.3 bits (230), Expect = 3e-21
Identities = 32/250 (12%), Positives = 80/250 (32%), Gaps = 27/250 (10%)
Query: 233 AEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYF 292
+ K + +LG ++ N E+A KA+E DP+ +A V+
Sbjct: 23 DQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQ 82
Query: 293 ERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE 352
E E+Y + + + + A+ L G + + ++ A ++
Sbjct: 83 TEMEPKLADEEYRKALASDSRN---ARVLNNYGGFLYEQKRYEEAYQRLLEAS------- 132
Query: 353 IRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDP 412
+ + E + + + G + K A A + + +++ N + P
Sbjct: 133 --------QDTLYPERSRVFEN---------LGLVSLQMKKPAQAKEYFEKSLRLNRNQP 175
Query: 413 KYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKA 472
A K + + + + + + + ++ + + + A +
Sbjct: 176 SVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235
Query: 473 LELDASNAEA 482
L + E
Sbjct: 236 KRLYPGSLEY 245
Score = 84.6 bits (210), Expect = 1e-18
Identities = 28/230 (12%), Positives = 65/230 (28%), Gaps = 31/230 (13%)
Query: 255 NEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF 314
+ + + K + + Y +R +Q + +E
Sbjct: 11 SSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS 70
Query: 315 KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYID 374
A A + ++ + K A + K+++ D
Sbjct: 71 ---ADAHAALAVVFQTEMEPKLADEEYRKALA--------------------------SD 101
Query: 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINR--NPDDPKYYSNRAACYTKLAAFDLGL 432
A G L++ +Y +A + EA P+ + + N ++
Sbjct: 102 SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ E L+L+ + +L ++ A Y+ + NA +
Sbjct: 162 EYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARS 211
Score = 65.8 bits (161), Expect = 3e-12
Identities = 14/100 (14%), Positives = 33/100 (33%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
G +LQ +A E + ++++L+ + + KE Y A + +
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKE 117
+ + S + +L P + + +E
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247
Score = 63.1 bits (154), Expect = 2e-11
Identities = 13/94 (13%), Positives = 27/94 (28%)
Query: 19 NAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW 78
++ L + + K + + + GN E+A K + + P
Sbjct: 11 SSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS 70
Query: 79 PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
++ K + Y + L D N
Sbjct: 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRN 104
Score = 61.9 bits (151), Expect = 7e-11
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
G LQ N +A +A+++D ++ + + F E + A E+ K ++
Sbjct: 44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLK--LDPNNEQ 114
+ + G L RY+E+ E + L P +
Sbjct: 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSR 142
Score = 61.5 bits (150), Expect = 9e-11
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 2/97 (2%)
Query: 18 GNAALQANNFIEAIEAYSEAIK--LDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK 75
G + + EA + EA + L +F N + +A E EK++ L
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171
Query: 76 PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ P L Y + Y+ + N
Sbjct: 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 93.7 bits (232), Expect = 3e-20
Identities = 43/220 (19%), Positives = 80/220 (36%), Gaps = 30/220 (13%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
L N ++ N EEA+ Y KA+E P +N+A+V ++ + + + Y + I
Sbjct: 15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
F A A +GN K+M+D + A + +++
Sbjct: 75 TF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQ-------------------------- 105
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
I+P A+ + +G +A+ Y A+ PD P Y N A C + +
Sbjct: 106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKA 472
+ + + + L+ R + + KA
Sbjct: 166 ERMKKLVSIVADQLEKN-RLPSVHPHHSMLYPLSHGFRKA 204
Score = 80.6 bits (198), Expect = 5e-16
Identities = 36/233 (15%), Positives = 72/233 (30%), Gaps = 40/233 (17%)
Query: 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVK 377
A +L + N ++ + + A + K++ + P
Sbjct: 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--------------------------VFPEF 42
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
A + L + GK +A+ Y EAI +P YSN ++ L+
Sbjct: 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 102
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNP 497
++++P F I + +AI +Y AL+L +A C
Sbjct: 103 AIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC-------- 154
Query: 498 EEVRKRAMGDPEVQQILRDPAMRLILEQ--MQNDPRALSDHLKNPEIASKIQK 548
+ + D + ++ +Q P H ++ +K
Sbjct: 155 ----LQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRK 203
Score = 79.1 bits (194), Expect = 1e-15
Identities = 39/207 (18%), Positives = 75/207 (36%), Gaps = 29/207 (14%)
Query: 276 FDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWK 335
PT NN+A + E+ ++ + Y + +E +F A A + + ++ +
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF---AAAHSNLASVLQQQGKLQ 60
Query: 336 NAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYA 395
A +++++++ I P A+ GN L +
Sbjct: 61 EALMHYKEAIR--------------------------ISPTFADAYSNMGNTLKEMQDVQ 94
Query: 396 DAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKI 455
A++ YT AI NP +SN A+ + + T LKL P F +
Sbjct: 95 GALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154
Query: 456 LQGMQQQSKAIDAYEKALELDASNAEA 482
LQ + + + +K + + A E
Sbjct: 155 LQIVCDWTDYDERMKKLVSIVADQLEK 181
Score = 76.4 bits (187), Expect = 1e-14
Identities = 19/97 (19%), Positives = 44/97 (45%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
N + N EA+ Y +A+++ SN ++ ++G ++AL ++ I + P
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
+ YS G+ L + + ++ Y ++++P
Sbjct: 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD 112
Score = 74.8 bits (183), Expect = 3e-14
Identities = 24/95 (25%), Positives = 41/95 (43%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
+ Q EA+ Y EAI++ T +SN + + + AL+ + I + P
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ +S S G E+I++Y LKL P+
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144
Score = 65.6 bits (159), Expect = 2e-11
Identities = 18/99 (18%), Positives = 41/99 (41%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GN + + A++ Y+ AI+++ SN ++ GN +A+ + LKP
Sbjct: 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQM 115
D+P Y L + + + ++ + + + +
Sbjct: 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181
Score = 52.9 bits (126), Expect = 2e-07
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 47 LFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGL 106
+N + ++GN E+A+ K + + P++ +S S L G+ +E++ Y+E +
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70
Query: 107 KLDPNN 112
++ P
Sbjct: 71 RISPTF 76
Score = 41.3 bits (96), Expect = 9e-04
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 1/90 (1%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ + + N EAI +Y A+KL + N + ++ E +K +S
Sbjct: 114 HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYE 103
+ D + +R S + +
Sbjct: 174 IVADQLE-KNRLPSVHPHHSMLYPLSHGFR 202
Score = 36.7 bits (84), Expect = 0.023
Identities = 6/40 (15%), Positives = 14/40 (35%)
Query: 73 SLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
P + + G +E++ Y + L++ P
Sbjct: 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 42
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 92.4 bits (229), Expect = 4e-20
Identities = 30/251 (11%), Positives = 77/251 (30%), Gaps = 31/251 (12%)
Query: 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQK-I 308
E + ++ E+ L + + + +Y E + K +
Sbjct: 71 EDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAV 130
Query: 309 ENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS----------------MSEHRTPE 352
+ + +A ++G Y K D +A F + + + +T
Sbjct: 131 KLEPEL---VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDS 187
Query: 353 IRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELF--------KNGKYADAVKEYTEA 404
+ +++ + +D + GN A+ Y +A
Sbjct: 188 GDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQA 247
Query: 405 INRNPDDPKY---YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQ 461
+ + NRA + ++ L+ LDP + + R+ ++L+ + +
Sbjct: 248 EKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307
Query: 462 QSKAIDAYEKA 472
+ +++ K
Sbjct: 308 LTSLLESKGKT 318
Score = 73.5 bits (180), Expect = 6e-14
Identities = 17/155 (10%), Positives = 52/155 (33%), Gaps = 6/155 (3%)
Query: 331 MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEE--KKAYIDPVKAEEAKERGNEL 388
M + SM E + ++ +++ + + +Y + E+A + ++
Sbjct: 21 MASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDV 80
Query: 389 FKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDL-GLKDCETCLKLDPKFLK 447
+ +++ E + + + + + +KL+P+ ++
Sbjct: 81 --QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE 138
Query: 448 GWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
W + G++ + A + AL N +
Sbjct: 139 AWNQLGEVYWKKGDVTSAHTCFSGALTHC-KNKVS 172
Score = 68.9 bits (168), Expect = 2e-12
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGT---NHILFSNRSAAFAKEGNYEKALED 67
+ L N +A+ AY++A K+D N L NR+ E +Y +ALE
Sbjct: 221 NAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEG 280
Query: 68 AEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
+ +L P WP+ R+ L +L R + + K P Q
Sbjct: 281 FSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG---KTKPKKLQ 324
Score = 67.7 bits (165), Expect = 4e-12
Identities = 29/270 (10%), Positives = 81/270 (30%), Gaps = 33/270 (12%)
Query: 237 DKNLTDEQRSAKKEKELGNEAYKKKNF-EEALAHYNKAVEFDPTDITFQNNIAAVYFERK 295
++ L Q A+ G ++ EA +KAV+ +P + N + VY+++
Sbjct: 92 EEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG 151
Query: 296 EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKV---------YFEKSMS 346
+ + + + + +LQ + ++++ + + ++
Sbjct: 152 DVTSAHTCFSGALTHCKN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ 207
Query: 347 E----------------HRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKE---RGNE 387
++ + + +D + R
Sbjct: 208 MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATL 267
Query: 388 LFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLK 447
Y +A++ +++A +P P+ L+ L+ + +
Sbjct: 268 HKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSML 327
Query: 448 GWIRKGKILQGMQQQSKAIDAYEKALELDA 477
G +R + + ++ + LEL
Sbjct: 328 GSLRPAHLGPCGDGRYQSASGQKMTLELKP 357
Score = 67.0 bits (163), Expect = 6e-12
Identities = 11/90 (12%), Positives = 28/90 (31%), Gaps = 1/90 (1%)
Query: 25 NNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNY-EKALEDAEKTISLKPDWPKGYS 83
+ ++ E + + A +Y +A K + L+P+ + ++
Sbjct: 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWN 141
Query: 84 RKGSALSYLGRYKESISTYEEGLKLDPNNE 113
+ G G + + + L N
Sbjct: 142 QLGEVYWKKGDVTSAHTCFSGALTHCKNKV 171
Score = 61.9 bits (150), Expect = 3e-10
Identities = 15/109 (13%), Positives = 38/109 (34%), Gaps = 11/109 (10%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFA--------KEGNYEKALED- 67
+ + + ++++ A+++D + + A+ ++AL
Sbjct: 185 TDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAY 244
Query: 68 --AEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
AEK P + + + Y Y E++ + + LDP +
Sbjct: 245 AQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293
Score = 48.9 bits (116), Expect = 3e-06
Identities = 17/115 (14%), Positives = 35/115 (30%), Gaps = 1/115 (0%)
Query: 1 MENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN 60
M Q + + ++ A ++ H + +
Sbjct: 24 MTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEE 83
Query: 61 YEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRY-KESISTYEEGLKLDPNNEQ 114
EK L+ E+ + + KG AL+ Y E+ + +KL+P +
Sbjct: 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE 138
Score = 42.7 bits (100), Expect = 3e-04
Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 9/106 (8%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
++++ EAL +++A DP Q + +E
Sbjct: 264 RATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG------- 316
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLIS 358
K K LQ + + ++ + + T E++ L +
Sbjct: 317 --KTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLST 360
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 86.7 bits (215), Expect = 9e-20
Identities = 24/230 (10%), Positives = 65/230 (28%), Gaps = 48/230 (20%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
+ + A + +A++++ + + + + Y+ + +
Sbjct: 9 QKVSAAIEAGQNGQAVSYFRQTIALNI------DRTEMYYWTNVDKNS------------ 50
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
++ +K + YKK ++ A +++++ +
Sbjct: 51 ---EISSKLATELALAYKKNRNYDKAYLFYKELLQ------------------------- 82
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRA-ACYTKLAAFDL 430
P + + G+ DA++ Y + + D+ Y
Sbjct: 83 -KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK 141
Query: 431 GLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480
L+ L K R G + KA ++ +K + S
Sbjct: 142 KLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191
Score = 80.6 bits (199), Expect = 1e-17
Identities = 25/166 (15%), Positives = 50/166 (30%), Gaps = 11/166 (6%)
Query: 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVK 377
+ + + + A YF ++++ ++ ++ +
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIA----------LNIDRTEMYYWTNVDKNSEIS 53
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
++ A E KN Y A Y E + + P++ A L+ E
Sbjct: 54 SKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEK 113
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQ-SKAIDAYEKALELDASNAEA 482
L+L+ L I G +Q K ++ K L A
Sbjct: 114 ILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159
Score = 73.2 bits (180), Expect = 4e-15
Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 16/114 (14%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLD----------------GTNHILFSNRSAAFAKEGN 60
K +AA++A +A+ + + I L+ + L + + A+ K N
Sbjct: 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69
Query: 61 YEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
Y+KA ++ + P+ G+ K+++ YE+ L+L+ +N
Sbjct: 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123
Score = 72.9 bits (179), Expect = 6e-15
Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
Query: 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN-YEKALEDAE 69
V L+ + +A+ Y + ++L+ N + +K LE
Sbjct: 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDY 147
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMK 116
K +S R G + + RY+++ ++ ++ + P+ E K
Sbjct: 148 KKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQK 194
Score = 70.9 bits (174), Expect = 3e-14
Identities = 28/176 (15%), Positives = 51/176 (28%), Gaps = 30/176 (17%)
Query: 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCI 301
+ + S+K EL K +N+++A Y + ++ P ++ A + R + +
Sbjct: 49 NSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL 108
Query: 302 EQYIQKIENRADFKLIAKALQRIGNCY-KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360
Y + ++ AD A +GN Y E K K +S
Sbjct: 109 RMYEKILQLEADN---LAANIFLGNYYYLTAEQEKKKLETDYKKLS-------------- 151
Query: 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYS 416
G +Y A + I R P +
Sbjct: 152 ------------SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195
Score = 67.5 bits (165), Expect = 4e-13
Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 1/104 (0%)
Query: 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKT 71
L + A + N+ +A Y E ++ N + G + AL EK
Sbjct: 55 KLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI 114
Query: 72 ISLKPDWPKGYSRKGSALSYLG-RYKESISTYEEGLKLDPNNEQ 114
+ L+ D G+ + K+ + T + L +
Sbjct: 115 LQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQY 158
Score = 47.0 bits (112), Expect = 4e-06
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 16/81 (19%)
Query: 50 NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGY----------------SRKGSALSYLG 93
+ +A + G +A+ +TI+L D + Y + A
Sbjct: 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68
Query: 94 RYKESISTYEEGLKLDPNNEQ 114
Y ++ Y+E L+ PNN
Sbjct: 69 NYDKAYLFYKELLQKAPNNVD 89
Score = 32.4 bits (74), Expect = 0.23
Identities = 9/48 (18%), Positives = 23/48 (47%)
Query: 82 YSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129
+K SA G+ +++S + + + L+ + +M +N E++
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISS 54
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 82.9 bits (206), Expect = 2e-19
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+G A N+ E+I+ + +AI+LD + + A YE+A++ I++
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71
Query: 77 D--WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
D ++ K AL Y+ + E KL+ ++
Sbjct: 72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
Score = 74.4 bits (184), Expect = 2e-16
Identities = 17/106 (16%), Positives = 41/106 (38%), Gaps = 2/106 (1%)
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ EE G + G Y +++ + +AI +P++ KY+ + L ++ +
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 433 KDCETCLKL--DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476
+ + D W K L+ ++ + + E +L+
Sbjct: 61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106
Score = 62.5 bits (153), Expect = 3e-12
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 50 NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLD 109
GNY ++++ EK I L P+ K + KG AL L RY+E++ Y + +
Sbjct: 11 LEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI 70
Query: 110 PNNE 113
+
Sbjct: 71 EDEY 74
Score = 57.5 bits (140), Expect = 1e-10
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 408 NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAID 467
+P+ Y + + E ++LDP+ K W+ KGK L +++ +A+D
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61
Query: 468 AYEKALEL--DASNAEA 482
Y + + D N +
Sbjct: 62 CYNYVINVIEDEYNKDV 78
Score = 53.2 bits (129), Expect = 6e-09
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 1/91 (1%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
G Y N+ E++ + KA++ DP + + + + Y++ ++ Y I
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEK 343
D + + +E + E
Sbjct: 72 DEYN-KDVWAAKADALRYIEGKEVEAEIAEA 101
Score = 44.8 bits (107), Expect = 5e-06
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 384 RGNELFKNGKYADAVKEYTEAINRNPD--DPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441
+G L+ +Y +AV Y IN D + ++ +A + ++ + E KL
Sbjct: 46 KGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105
Query: 442 DPKF 445
+
Sbjct: 106 EHHH 109
Score = 39.4 bits (93), Expect = 3e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 79 PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
P+ Y +G G Y ESI +E+ ++LDP
Sbjct: 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE 39
Score = 38.6 bits (91), Expect = 6e-04
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF--DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309
G Y + +EEA+ YN + D + A + + E + +
Sbjct: 46 KGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAK 104
Score = 38.2 bits (90), Expect = 0.001
Identities = 8/42 (19%), Positives = 22/42 (52%)
Query: 441 LDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ + + + +G + +++ID +EKA++LD ++
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY 42
Score = 29.3 bits (67), Expect = 0.99
Identities = 1/28 (3%), Positives = 5/28 (17%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTD 280
+ + E + +
Sbjct: 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109
Score = 29.3 bits (67), Expect = 1.0
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNH 45
K +A E KL+ +H
Sbjct: 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 83.2 bits (207), Expect = 3e-19
Identities = 32/96 (33%), Positives = 56/96 (58%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GNA + ++ EAIE Y +A++LD + + N A+ K+G+Y++A+E +K + L P
Sbjct: 41 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + G+A G Y E+I Y++ L+LDP +
Sbjct: 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Score = 79.0 bits (196), Expect = 8e-18
Identities = 32/96 (33%), Positives = 56/96 (58%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GNA + ++ EAIE Y +A++LD + + N A+ K+G+Y++A+E +K + L P
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + G+A G Y E+I Y++ L+LDP +
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102
Score = 72.4 bits (179), Expect = 2e-15
Identities = 31/99 (31%), Positives = 51/99 (51%)
Query: 384 RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443
GN +K G Y +A++ Y +A+ +P + + N Y K +D ++ + L+LDP
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 444 KFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ + W G +AI+ Y+KALELD +AEA
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Score = 68.2 bits (168), Expect = 5e-14
Identities = 28/93 (30%), Positives = 47/93 (50%)
Query: 384 RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443
GN +K G Y +A++ Y +A+ +P + + N Y K +D ++ + L+LDP
Sbjct: 41 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Query: 444 KFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476
+ + W G +AI+ Y+KALELD
Sbjct: 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
Score = 66.3 bits (163), Expect = 3e-13
Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 29/158 (18%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LGN YK+ +++EA+ +Y KA+E DP N+ Y+++ +YD+ IE Y + +E
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
A+A +GN Y K D+ A Y++K++
Sbjct: 67 RS---AEAWYNLGNAYYKQGDYDEAIEYYQKALE-------------------------- 97
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD 410
+DP AE GN +K G Y +A++ Y +A+ +P
Sbjct: 98 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Score = 60.1 bits (147), Expect = 3e-11
Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 29/160 (18%)
Query: 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
N+ Y+++ +YD+ IE Y + +E A+A +GN Y K D+ A Y++K+
Sbjct: 5 YNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 345 MSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404
+ +DP AE GN +K G Y +A++ Y +A
Sbjct: 62 LE--------------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 95
Query: 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444
+ +P + + N Y K +D ++ + L+LDP+
Sbjct: 96 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Score = 59.3 bits (145), Expect = 6e-11
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 48 FSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107
+ N A+ K+G+Y++A+E +K + L P + + G+A G Y E+I Y++ L+
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 108 LDPNN 112
LDP +
Sbjct: 64 LDPRS 68
Score = 47.4 bits (114), Expect = 9e-07
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 415 YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474
+ N Y K +D ++ + L+LDP+ + W G +AI+ Y+KALE
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 475 LDASNAEA 482
LD +AEA
Sbjct: 64 LDPRSAEA 71
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 88.8 bits (220), Expect = 6e-19
Identities = 24/255 (9%), Positives = 60/255 (23%), Gaps = 55/255 (21%)
Query: 258 YKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYF---ERKEYDQCIEQYIQKIENRADF 314
E A + KA+E P + F + +A + I+ Q I D
Sbjct: 149 CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208
Query: 315 KLIAKALQRIGNCYKKMEDWKN----AKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKK 370
+ KM + + E+++
Sbjct: 209 ---QYLKVLLALKLHKMREEGEEEGEGEKLVEEALE------------------------ 241
Query: 371 AYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA---- 426
P + + + + A++ +A+ P++ + CY
Sbjct: 242 --KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVM 299
Query: 427 ---------------AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEK 471
+ + + + + + Q +A ++K
Sbjct: 300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK 359
Query: 472 ALELDASNAEAVEGY 486
+ + +
Sbjct: 360 EFSKELTPVAKQLLH 374
Score = 84.2 bits (208), Expect = 2e-17
Identities = 33/258 (12%), Positives = 77/258 (29%), Gaps = 38/258 (14%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
L + + E +A+E P + A Y + E D+ IE + +E
Sbjct: 219 LHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
+ A +IG CY+ KV+ ++ E+ R L+ + + +K
Sbjct: 279 NN---AYLHCQIGCCYRA-------KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPK----YYSNRAACYTKLAAF 428
+ + +Y +A + + ++ + ++
Sbjct: 329 ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE 388
Query: 429 DLGLKDCETCLKLDPK------------------------FLKGWIRKGKILQGMQQQSK 464
D + +K++ K + + + ++ +
Sbjct: 389 DKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQ 448
Query: 465 AIDAYEKALELDASNAEA 482
A + E+ LE + A
Sbjct: 449 ADEDSERGLESGSLIPSA 466
Score = 80.0 bits (197), Expect = 4e-16
Identities = 43/251 (17%), Positives = 72/251 (28%), Gaps = 45/251 (17%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF---------DPTDITFQNNIAAVYFERKEYDQCIEQ 303
L + K E AL KA E + + N A VY+
Sbjct: 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQI- 115
Query: 304 YIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKK 363
Y+ K+++ + + ++ ++ E+ + +
Sbjct: 116 YVDKVKH-------------VCEKFSSPYRIESPELDCEEGWT----------RLKCGGN 152
Query: 364 IKEEEKKAY-----IDPVKAEEAKERGN---ELFKNGKYADAVKEYTEAINRNPDDPKYY 415
E K + P E L +A+ +AI NPD+
Sbjct: 153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK 212
Query: 416 SNRAACYTKLA----AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEK 471
A K+ G K E L+ P K + + KAI+ +K
Sbjct: 213 VLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKK 272
Query: 472 ALELDASNAEA 482
ALE +NA
Sbjct: 273 ALEYIPNNAYL 283
Score = 71.9 bits (176), Expect = 2e-13
Identities = 35/246 (14%), Positives = 76/246 (30%), Gaps = 34/246 (13%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
L +FE+ + Y + T N +A + + + + +E + E
Sbjct: 23 NLMEGENSLDDFEDKV-FYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81
Query: 312 ADFKLIAKALQRI------GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365
++ + Y M + ++Y +K K +
Sbjct: 82 QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV-----------------KHVC 124
Query: 366 EEEKKAYIDPVKAEEAKERGNELFK--NGKYADAVKEYTEAINRNPDDPKYYSNRAACYT 423
E+ Y E E G K + A + +A+ + P +P++ S A
Sbjct: 125 EKFSSPY-RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY 183
Query: 424 KLAAF---DLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQ----SKAIDAYEKALELD 476
+L + + ++L+P + L M+++ + E+ALE
Sbjct: 184 RLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA 243
Query: 477 ASNAEA 482
+
Sbjct: 244 PGVTDV 249
Score = 69.6 bits (170), Expect = 9e-13
Identities = 24/177 (13%), Positives = 59/177 (33%), Gaps = 5/177 (2%)
Query: 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQ 303
Q +E + + + A+AH KA E + + +A+++ +Y++
Sbjct: 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYY 356
Query: 304 YIQKIENRADFKLIAKALQRIGN-CYKKMEDWKNAKVYFEKSMS-EHRTPEIRTLISEME 361
+ ++ R GN +M+ A +F + + ++ E + +++
Sbjct: 357 FQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416
Query: 362 KKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNR 418
K + + + +E N K A ++ + P S
Sbjct: 417 KIA---KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470
Score = 57.6 bits (139), Expect = 6e-09
Identities = 16/119 (13%), Positives = 45/119 (37%), Gaps = 4/119 (3%)
Query: 27 FIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKG---YS 83
A+ +A + + + S ++ A YE+A +K S + +
Sbjct: 316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHL 375
Query: 84 RKGSALSY-LGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFS 141
R G+ Y + ++I + EG+K++ + + ++ ++ +++ +
Sbjct: 376 RYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALH 434
Score = 55.7 bits (134), Expect = 2e-08
Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 9/109 (8%)
Query: 13 LLKDKGNAALQA--NNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN---YEKALED 67
L ++G L+ N A + +A++ N S + A + N + A++
Sbjct: 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDP 197
Query: 68 AEKTISLKPDWPKGYSRKGSALSYL----GRYKESISTYEEGLKLDPNN 112
+ I L PD L + E EE L+ P
Sbjct: 198 LRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246
Score = 51.9 bits (124), Expect = 3e-07
Identities = 13/124 (10%), Positives = 35/124 (28%), Gaps = 19/124 (15%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN------------- 60
L+ + + +AIE +A++ N L + +
Sbjct: 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309
Query: 61 ------YEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
A+ +K + + S S + +Y+E+ +++ +
Sbjct: 310 RKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369
Query: 115 MKEA 118
+
Sbjct: 370 KQLL 373
Score = 50.7 bits (121), Expect = 9e-07
Identities = 11/109 (10%), Positives = 35/109 (32%), Gaps = 19/109 (17%)
Query: 23 QANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGY 82
+ E + EA++ + + + + ++ +KA+E +K + P+ +
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284
Query: 83 SRKGSALS-------------------YLGRYKESISTYEEGLKLDPNN 112
+ G L +++ ++ + + N
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL 333
Score = 49.9 bits (119), Expect = 1e-06
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 10/90 (11%)
Query: 23 QANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGY 82
Q +AI + E +K++ + KE +K + A+ +S +
Sbjct: 384 QMKCEDKAIHHFIEGVKINQKS----------REKEKMKDKLQKIAKMRLSKNGADSEAL 433
Query: 83 SRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ +++ E GL+
Sbjct: 434 HVLAFLQELNEKMQQADEDSERGLESGSLI 463
Score = 47.6 bits (113), Expect = 8e-06
Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 3/102 (2%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ + + + E +S +++ + E+A EK +
Sbjct: 107 MGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE 166
Query: 74 LKPDWPKGYSRKGSALSYL---GRYKESISTYEEGLKLDPNN 112
KP P+ S A L + +I + ++L+P+N
Sbjct: 167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208
Score = 46.5 bits (110), Expect = 2e-05
Identities = 14/123 (11%), Positives = 37/123 (30%), Gaps = 19/123 (15%)
Query: 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKL---------DGTNHILFSNRSAAFAKEG 59
++ ++ A+E +A +L + + + + N + + G
Sbjct: 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG 108
Query: 60 NYEKALEDAEKTISLKPDWPKGYS--------RKGSALSYLG--RYKESISTYEEGLKLD 109
+K + + Y +G G + + + +E+ L+
Sbjct: 109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168
Query: 110 PNN 112
P N
Sbjct: 169 PKN 171
Score = 35.3 bits (81), Expect = 0.048
Identities = 8/65 (12%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 23 QANNFIEAIEAYSE-AIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKG 81
+ + ++ ++ + +G + + ++A ED+E+ + P
Sbjct: 407 EKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466
Query: 82 YSRKG 86
S G
Sbjct: 467 SSWNG 471
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 81.1 bits (200), Expect = 2e-18
Identities = 20/117 (17%), Positives = 40/117 (34%)
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
I E+ +++G Y DA + + D +++ AC + +DL +
Sbjct: 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAI 75
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
+D + + L + ++A A EL A+ E E +
Sbjct: 76 HSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRV 132
Score = 66.1 bits (161), Expect = 4e-13
Identities = 22/127 (17%), Positives = 36/127 (28%), Gaps = 10/127 (7%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+ L Q+ + +A + LD + F A G Y+ A+
Sbjct: 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYS 79
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN----------EQMKEAI 119
+ P+ L G E+ S +L N M EAI
Sbjct: 80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAI 139
Query: 120 KDVRNQE 126
K + +
Sbjct: 140 KLKKEMK 146
Score = 63.4 bits (154), Expect = 4e-12
Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 7/125 (5%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
L Y+ +E+A + D D F + A +YD I Y
Sbjct: 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS----EHRTPEIRTLISEMEKKIKEE 367
+ C + + A+ + E+ T +S M + IK +
Sbjct: 86 IXE---PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLK 142
Query: 368 EKKAY 372
++ +
Sbjct: 143 KEMKH 147
Score = 58.0 bits (140), Expect = 3e-10
Identities = 14/98 (14%), Positives = 27/98 (27%)
Query: 392 GKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR 451
G + D + + A + ++ + LD + ++
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 452 KGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
G Q M Q AI +Y +D +C
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98
Score = 55.3 bits (133), Expect = 2e-09
Identities = 12/90 (13%), Positives = 28/90 (31%)
Query: 26 NFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRK 85
+ ++ + + + G YE A + L + +
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 86 GSALSYLGRYKESISTYEEGLKLDPNNEQM 115
G+ +G+Y +I +Y G +D +
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRF 91
Score = 49.5 bits (118), Expect = 2e-07
Identities = 14/87 (16%), Positives = 23/87 (26%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
G + AI +YS +D + + + G +A L +
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEE 104
P+ S L K E
Sbjct: 122 XPEFXELSTRVSSMLEAIKLKKEMKHE 148
Score = 46.8 bits (111), Expect = 2e-06
Identities = 10/98 (10%), Positives = 28/98 (28%)
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+D + G G+Y A+ Y+ + +P++ + A C +
Sbjct: 50 LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAE 109
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYE 470
+L + ++ ++ +
Sbjct: 110 SGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMKH 147
Score = 32.2 bits (73), Expect = 0.18
Identities = 6/54 (11%), Positives = 14/54 (25%)
Query: 59 GNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
G + D + G Y+++ ++ LD +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD 54
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 79.4 bits (197), Expect = 4e-18
Identities = 35/96 (36%), Positives = 58/96 (60%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GNA + ++ EAIE Y +A++LD N + N A+ K+G+Y++A+E +K + L P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + + G+A G Y E+I Y++ L+LDPNN
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110
Score = 71.7 bits (177), Expect = 3e-15
Identities = 32/99 (32%), Positives = 53/99 (53%)
Query: 384 RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443
GN +K G Y +A++ Y +A+ +P++ + + N Y K +D ++ + L+LDP
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 444 KFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ W G +AI+ Y+KALELD +NAEA
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
Score = 59.3 bits (145), Expect = 4e-11
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GNA + ++ EAIE Y +A++LD N + N A+ K+G+Y++A+E +K + L P
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108
Query: 77 DWPKGYSRKGSALSYLG 93
+ + G+A G
Sbjct: 109 NNAEAKQNLGNAKQKQG 125
Score = 59.3 bits (145), Expect = 6e-11
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 48 FSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107
+ N A+ K+G+Y++A+E +K + L P+ + + G+A G Y E+I Y++ L+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 108 LDPNN 112
LDPNN
Sbjct: 72 LDPNN 76
Score = 53.2 bits (129), Expect = 7e-09
Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LGN YK+ +++EA+ +Y KA+E DP + N+ Y+++ +YD+ IE Y + +E
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEK 343
+ A+A +GN Y K D+ A Y++K
Sbjct: 75 NN---AEAWYNLGNAYYKQGDYDEAIEYYQK 102
Score = 52.0 bits (126), Expect = 2e-08
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 29/141 (20%)
Query: 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
N+ Y+++ +YD+ IE Y + +E + A+A +GN Y K D+ A Y++K+
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 345 MSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404
+ +DP AE GN +K G Y +A++ Y +A
Sbjct: 70 LE--------------------------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103
Query: 405 INRNPDDPKYYSNRAACYTKL 425
+ +P++ + N K
Sbjct: 104 LELDPNNAEAKQNLGNAKQKQ 124
Score = 50.1 bits (121), Expect = 7e-08
Identities = 19/74 (25%), Positives = 36/74 (48%)
Query: 384 RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443
GN +K G Y +A++ Y +A+ +P++ + + N Y K +D ++ + L+LDP
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108
Query: 444 KFLKGWIRKGKILQ 457
+ G Q
Sbjct: 109 NNAEAKQNLGNAKQ 122
Score = 48.9 bits (118), Expect = 2e-07
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 409 PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDA 468
+ + + N Y K +D ++ + L+LDP + W G +AI+
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 469 YEKALELDASNAEA 482
Y+KALELD +NAEA
Sbjct: 66 YQKALELDPNNAEA 79
Score = 48.5 bits (117), Expect = 3e-07
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LGN YK+ +++EA+ +Y KA+E DP + N+ Y+++ +YD+ IE Y + +E
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108
Query: 313 DFKLIAKALQRIGNCYKKM 331
+ A+A Q +GN +K
Sbjct: 109 NN---AEAKQNLGNAKQKQ 124
Score = 37.0 bits (87), Expect = 0.003
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 73 SLKP-DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
++ P + + + G+A G Y E+I Y++ L+LDPNN
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 81.9 bits (203), Expect = 7e-18
Identities = 37/245 (15%), Positives = 73/245 (29%), Gaps = 30/245 (12%)
Query: 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQC 300
+ + + +L E + +++ +A A A++ DP + A +Y K D+
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61
Query: 301 IEQYIQKIENRADFKLIAKALQRIGNC-YKKMEDWKNAKVYFEKSMSEHRTPEIRTLISE 359
E + Q + + D A+ G ++ + YF+K++
Sbjct: 62 QESFRQALSIKPDS---AEINNNYGWFLCGRLNRPAESMAYFDKAL-------------- 104
Query: 360 MEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRA 419
Y P A +G K G++ A ++ P P + A
Sbjct: 105 --------ADPTYPTPYIANLN--KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELA 154
Query: 420 ACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479
+ + G + A AYE +L A+
Sbjct: 155 RTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAK--ALGNAQAAYEYEAQLQANF 212
Query: 480 AEAVE 484
+ E
Sbjct: 213 PYSEE 217
Score = 61.1 bits (149), Expect = 8e-11
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
++ ++ +A + +A+K D N + + R+ + +KA E + +S+KPD
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74
Query: 78 WPKGYSRKGSAL-SYLGRYKESISTYEEGLKLDPNNEQMKEA 118
+ + G L L R ES++ +++ L DP A
Sbjct: 75 SAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIA 115
Score = 58.4 bits (142), Expect = 7e-10
Identities = 13/93 (13%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 23 QANNFIEAIEAYSEAIK--LDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPK 80
+ N E++ + +A+ T +I N+ AK+G + A +++++ +P +P
Sbjct: 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP 148
Query: 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPNNE 113
+ G+ ++ +++ +
Sbjct: 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ 181
Score = 56.1 bits (136), Expect = 4e-09
Identities = 15/109 (13%), Positives = 26/109 (23%), Gaps = 2/109 (1%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
KG + + F A ++ F + G A +K S
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125
+ + YE +L N +E + Q
Sbjct: 179 VLQADD--LLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLTGQ 225
Score = 52.3 bits (126), Expect = 7e-08
Identities = 8/63 (12%), Positives = 24/63 (38%)
Query: 50 NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLD 109
+ + + +Y +A E + P + + YL ++ ++ + L +
Sbjct: 13 QLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK 72
Query: 110 PNN 112
P++
Sbjct: 73 PDS 75
Score = 28.8 bits (65), Expect = 4.3
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 82 YSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
++ Y+++ ++ E+ LK DP NE
Sbjct: 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNEL 43
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 79.5 bits (196), Expect = 8e-18
Identities = 13/104 (12%), Positives = 29/104 (27%)
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
I ++ + + G+ +A + + + Y AA Y F
Sbjct: 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAA 90
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476
L G+ ++ KA + +E ++
Sbjct: 91 DLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134
Score = 72.1 bits (177), Expect = 3e-15
Identities = 11/105 (10%), Positives = 30/105 (28%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ EA + D N +A + + +++A + +
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEA 118
L + G L ++ +E ++ + + +A
Sbjct: 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKA 143
Score = 71.7 bits (176), Expect = 5e-15
Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 3/114 (2%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
+ Y K EEA + +D ++ + +AA+Y ++++ Q + Y
Sbjct: 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365
+ + G C +++ AK FE + +++ I+
Sbjct: 101 KND---YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAIQ 151
Score = 49.8 bits (119), Expect = 2e-07
Identities = 16/155 (10%), Positives = 32/155 (20%), Gaps = 30/155 (19%)
Query: 293 ERKEYDQCIEQYIQKIENRADFKLI----AKALQRIGNCYKKMEDWKNAKVYFEKSMSEH 348
E + + I D I + + + A+V+F
Sbjct: 7 ENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI-- 64
Query: 349 RTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408
D + ++ A Y A
Sbjct: 65 ------------------------YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100
Query: 409 PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443
+D + C +L A + E ++
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
Score = 45.9 bits (109), Expect = 4e-06
Identities = 13/69 (18%), Positives = 21/69 (30%)
Query: 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDA 68
Y V + F +A + Y+ A L ++ + + KA E
Sbjct: 68 YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECF 127
Query: 69 EKTISLKPD 77
E I D
Sbjct: 128 ELVIQHSND 136
Score = 42.9 bits (101), Expect = 5e-05
Identities = 11/165 (6%), Positives = 36/165 (21%), Gaps = 31/165 (18%)
Query: 261 KNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKA 320
+ + A + + A ++ + ++ +
Sbjct: 16 IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN---VDY 72
Query: 321 LQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEE 380
+ + Y+ E ++ A + + + +
Sbjct: 73 IMGLAAIYQIKEQFQQAADLYAVAFA--------------------------LGKNDYTP 106
Query: 381 AKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
G + A + + I + D+ +A Y
Sbjct: 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLK--IKAQSYLDA 149
Score = 32.1 bits (73), Expect = 0.24
Identities = 4/51 (7%), Positives = 11/51 (21%)
Query: 439 LKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
+ + + +A + D N + + G
Sbjct: 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAI 79
Score = 27.8 bits (62), Expect = 6.1
Identities = 7/59 (11%), Positives = 12/59 (20%), Gaps = 7/59 (11%)
Query: 54 AFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
A + + D GR +E+ + D N
Sbjct: 18 AINSGATLKDINA-------IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 78.1 bits (193), Expect = 9e-18
Identities = 13/104 (12%), Positives = 34/104 (32%), Gaps = 6/104 (5%)
Query: 29 EAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSA 88
E + N +L +A+ ++ AL + P + + G
Sbjct: 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62
Query: 89 LSYLGRYKESISTYEEGLKLDPNN------EQMKEAIKDVRNQE 126
L G + +E GL + ++++ ++ + ++
Sbjct: 63 LQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARED 106
Score = 70.8 bits (174), Expect = 4e-15
Identities = 19/87 (21%), Positives = 29/87 (33%)
Query: 396 DAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKI 455
+ + + D+ Y + FD L L DP + W GK
Sbjct: 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62
Query: 456 LQGMQQQSKAIDAYEKALELDASNAEA 482
LQG ++ A A+E L S +
Sbjct: 63 LQGQGDRAGARQAWESGLAAAQSRGDQ 89
Score = 55.4 bits (134), Expect = 1e-09
Identities = 9/108 (8%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Query: 264 EEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQR 323
+ + ++ + + Y E +++D + ++ + + A +
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY---SVAWKW 58
Query: 324 IGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
+G + D A+ +E ++ ++ + ++ E++ ++ ++
Sbjct: 59 LGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARED 106
Score = 48.5 bits (116), Expect = 2e-07
Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE--- 309
LG + + F+ AL H A++FDPT + + + + + +
Sbjct: 25 LGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84
Query: 310 NRADFKLIAKALQRIGNCYKKME 332
+R D + ++ + +++
Sbjct: 85 SRGD----QQVVKELQVFLRRLA 103
Score = 42.7 bits (101), Expect = 3e-05
Identities = 7/50 (14%), Positives = 15/50 (30%)
Query: 62 EKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN 111
+ E E ++ D G + ++ ++ L DP
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT 51
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 83.4 bits (206), Expect = 5e-17
Identities = 13/110 (11%), Positives = 24/110 (21%)
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
P + G + +P P+ +
Sbjct: 18 HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAA 77
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ P+ + G L+ Q A AY +A +L
Sbjct: 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI 127
Score = 76.0 bits (187), Expect = 9e-15
Identities = 14/97 (14%), Positives = 30/97 (30%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
+A L + A + L + + + + +A ++ P+
Sbjct: 30 ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
P G AL G+ + + + Y +L P
Sbjct: 90 HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126
Score = 73.7 bits (181), Expect = 5e-14
Identities = 13/92 (14%), Positives = 29/92 (31%)
Query: 391 NGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWI 450
+ + A+ P D + A + G + L L P +
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 451 RKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
R G++ Q+ ++A ++A + +
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93
Score = 71.0 bits (174), Expect = 4e-13
Identities = 23/168 (13%), Positives = 42/168 (25%), Gaps = 29/168 (17%)
Query: 262 NFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKAL 321
+ L AV P D +A + + + +A+
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH---PEAV 60
Query: 322 QRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEA 381
R+G + A V +++ P A
Sbjct: 61 ARLGRVRWTQQRHAEAAVLLQQASD--------------------------AAPEHPGIA 94
Query: 382 KERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFD 429
G+ L G+ A YT A P++P + +L +
Sbjct: 95 LWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR 142
Score = 69.5 bits (170), Expect = 1e-12
Identities = 11/89 (12%), Positives = 31/89 (34%)
Query: 24 ANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83
+ + A++ + + + + A G+ ++ ++L P P+ +
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 84 RKGSALSYLGRYKESISTYEEGLKLDPNN 112
R G R+ E+ ++ P +
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEH 90
Score = 61.4 bits (149), Expect = 4e-10
Identities = 6/92 (6%), Positives = 25/92 (27%), Gaps = 3/92 (3%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
L + + + + P + V + ++ + + Q +
Sbjct: 29 LADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
+ +G+ + + A + ++
Sbjct: 89 EH---PGIALWLGHALEDAGQAEAAAAAYTRA 117
Score = 54.5 bits (131), Expect = 7e-08
Identities = 8/56 (14%), Positives = 17/56 (30%)
Query: 59 GNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
+ + L + +P + A +G + GL L P + +
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE 58
Score = 48.7 bits (116), Expect = 4e-06
Identities = 12/78 (15%), Positives = 21/78 (26%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
G EA +A + + A G E A + L P+
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123
Query: 78 WPKGYSRKGSALSYLGRY 95
P ++ + L +
Sbjct: 124 EPYITAQLLNWRRRLCDW 141
Score = 47.9 bits (114), Expect = 6e-06
Identities = 11/91 (12%), Positives = 30/91 (32%), Gaps = 3/91 (3%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LG + ++ EA +A + P + + + + Y + +
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEK 343
+ ++ N +++ DW+ V +
Sbjct: 123 EE---PYITAQLLNWRRRLCDWRALDVLSAQ 150
Score = 34.1 bits (78), Expect = 0.15
Identities = 8/53 (15%), Positives = 18/53 (33%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEK 70
G+A A A AY+ A +L + + + ++ + +
Sbjct: 98 GHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 78.9 bits (194), Expect = 4e-16
Identities = 38/171 (22%), Positives = 60/171 (35%), Gaps = 26/171 (15%)
Query: 336 NAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYA 395
A + +E + + S+M + + A+ K GN LFK K
Sbjct: 146 MADLLYEVEVIGFDETKEGKARSDMTVEERIG---------AADRRKMDGNSLFKEEKLE 196
Query: 396 DAVKEYTEAINRNPDDPKY-----------------YSNRAACYTKLAAFDLGLKDCETC 438
+A+++Y AI DD + + N AAC KL +D + C
Sbjct: 197 EAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256
Query: 439 LKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
L + K K R+GK + Q A D + KA + + R
Sbjct: 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307
Score = 68.9 bits (168), Expect = 8e-13
Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 17/141 (12%)
Query: 3 NLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH----------------- 45
++ + K GN+ + EA++ Y AI G +
Sbjct: 171 TVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKN 230
Query: 46 ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEG 105
N +A K Y++A+ ++ + PK R+G A + LG+ + + +
Sbjct: 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKA 290
Query: 106 LKLDPNNEQMKEAIKDVRNQE 126
K P+++ ++ ++ + QE
Sbjct: 291 QKYAPDDKAIRRELRALAEQE 311
Score = 66.6 bits (162), Expect = 4e-12
Identities = 35/159 (22%), Positives = 59/159 (37%), Gaps = 21/159 (13%)
Query: 230 KKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ----- 284
K+ D + + +A + K GN +K++ EEA+ Y A+ + D FQ
Sbjct: 162 KEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKY 221
Query: 285 ------------NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME 332
NIAA + K YD+ I + KAL R G ++
Sbjct: 222 QDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK---NPKALFRRGKAKAELG 278
Query: 333 DWKNAKVYFEKSMS-EHRTPEIRTLISEMEKKIKEEEKK 370
+A+ F K+ IR + + ++ K +K
Sbjct: 279 QMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 79.7 bits (196), Expect = 5e-16
Identities = 40/169 (23%), Positives = 64/169 (37%), Gaps = 27/169 (15%)
Query: 336 NAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYA 395
NA++ +E ++ + + EK + K E+G FK GKY
Sbjct: 238 NAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVK------------EKGTVYFKGGKYM 285
Query: 396 DAVKEYTEAIN----RNPDDPKY-----------YSNRAACYTKLAAFDLGLKDCETCLK 440
AV +Y + ++ K + N A CY KL + ++ C+ L
Sbjct: 286 QAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345
Query: 441 LDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
LD KG R+G+ M + A +EK LE++ N A C
Sbjct: 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394
Score = 67.8 bits (165), Expect = 3e-12
Identities = 40/197 (20%), Positives = 75/197 (38%), Gaps = 29/197 (14%)
Query: 232 PAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITF-------- 283
E + + ++ A KE G +K + +A+ Y K V + +
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKAS 312
Query: 284 -------QNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKN 336
N+A Y + +EY + +E + + + K L R G M ++++
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA---NEKGLYRRGEAQLLMNEFES 369
Query: 337 AKVYFEKSMS-EHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYA 395
AK FEK + + R IS +KK KE ++ + + N +FK
Sbjct: 370 AKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER---------DRRIYAN-MFKKFAEQ 419
Query: 396 DAVKEYTEAINRNPDDP 412
DA +E +A+ + +
Sbjct: 420 DAKEEANKAMGKKTSEG 436
Score = 63.9 bits (155), Expect = 5e-11
Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 15/128 (11%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAI---------------KLDGTNHILFSNRSAAFAKE 58
+K+KG + +++A+ Y + + + F N + + K
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 59 GNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEA 118
Y KA+E +K + L KG R+G A + ++ + +E+ L+++P N+ +
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390
Query: 119 IKDVRNQE 126
I + +
Sbjct: 391 ISMCQKKA 398
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 75.1 bits (185), Expect = 9e-15
Identities = 21/140 (15%), Positives = 58/140 (41%), Gaps = 16/140 (11%)
Query: 1 MENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAI----------------KLDGTN 44
++++ ++ LK+ GN ++ N+ AI+ Y++ + KL
Sbjct: 213 LKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA 272
Query: 45 HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEE 104
N A K +++ A++ + + + P K R+ L Y ++++ ++
Sbjct: 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKK 332
Query: 105 GLKLDPNNEQMKEAIKDVRN 124
++ P ++ ++ + V+
Sbjct: 333 AQEIAPEDKAIQAELLKVKQ 352
Score = 72.8 bits (179), Expect = 4e-14
Identities = 34/184 (18%), Positives = 73/184 (39%), Gaps = 24/184 (13%)
Query: 209 EEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALA 268
E D P P + A+ + K++ ++ K +GN +K +N+E A+
Sbjct: 186 EGDDWGIFPKDGSGDSHPDFPED-ADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIK 244
Query: 269 HYNKAV----------------EFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
Y K + + P ++ NI A + ++ ++ ++ +E
Sbjct: 245 KYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT-PEIRTLISEMEKKIKEE---E 368
KAL R ++ ++++ A +K+ I+ + ++++KIK + E
Sbjct: 305 S---NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361
Query: 369 KKAY 372
K AY
Sbjct: 362 KAAY 365
Score = 67.4 bits (165), Expect = 3e-12
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAIN---------RNPDDPKY-------YSNRAAC 421
+E+ K GN FK+ + A+K+YT+ + + D K N AC
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282
Query: 422 YTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481
K++ + + C L++DP K R+ + QG+++ +A+ +KA E+ +
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 74.3 bits (183), Expect = 2e-14
Identities = 34/272 (12%), Positives = 83/272 (30%), Gaps = 52/272 (19%)
Query: 238 KNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ----NNIAAVYFE 293
+ G + +A + A++ D+ + + YF
Sbjct: 39 SGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY 98
Query: 294 RKEYDQCIEQYIQ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSE 347
+Y++ ++ + + +R AK+ +GN K M + A + E+ +
Sbjct: 99 LGDYNKAMQYHKHDLTLAKSMNDRLG---EAKSSGNLGNTLKVMGRFDEAAICCERHL-- 153
Query: 348 HRTPEIRTLISEMEKKIKEEEKKAYI------------DPVKAEEAKERGNELFKNGKYA 395
+ +++ + + + + G+++
Sbjct: 154 -----------TLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV--KEALT 200
Query: 396 DAVKEYTEA------INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL-KG 448
AV+ Y E + + N Y L F ++ + L++ +F +
Sbjct: 201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260
Query: 449 WIRK-----GKILQGMQQQSKAIDAYEKALEL 475
R+ G + Q A + Y++ L L
Sbjct: 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292
Score = 62.3 bits (152), Expect = 2e-10
Identities = 31/266 (11%), Positives = 74/266 (27%), Gaps = 68/266 (25%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVYFERKEYDQCIEQYIQ 306
LGN + ++ +A+ ++ + D N+ +D+ +
Sbjct: 92 LGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCER 151
Query: 307 ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE------IR 354
++ +R +AL +GN Y + +
Sbjct: 152 HLTLARQLGDRLS---EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208
Query: 355 TLISEMEKKIKEEEKKAY----IDPVKAEEAKERGNELFKNGKYADAVKEYTEA--INRN 408
L ++ + + + + + GN + G + A++ + E I R
Sbjct: 209 NL--KLMRDLGDRGAQGRACGNL-----------GNTYYLLGDFQAAIEHHQERLRIARE 255
Query: 409 PDDPKY----YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK------------ 452
D SN + L F+ + + L +
Sbjct: 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA---------LAVELGEREVEAQSC 306
Query: 453 ---GKILQGMQQQSKAIDAYEKALEL 475
G + + + AI+ + + L +
Sbjct: 307 YSLGNTYTLLHEFNTAIEYHNRHLAI 332
Score = 61.9 bits (151), Expect = 2e-10
Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 15/104 (14%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVYFERKEYDQCIEQYIQ 306
LGN FE+A HY + + + ++ Y E++ IE + +
Sbjct: 269 LGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328
Query: 307 ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
++ +R A+A +GN + + + A Y E+
Sbjct: 329 HLAIAQELGDRIG---EARACWSLGNAHSAIGGHERALKYAEQH 369
Score = 58.9 bits (143), Expect = 2e-09
Identities = 29/247 (11%), Positives = 72/247 (29%), Gaps = 75/247 (30%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVYFERKEYDQC 300
+ K+ A+ Y + ++ D N+ Y+ ++
Sbjct: 183 LGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAA 242
Query: 301 IEQYIQ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIR 354
IE + + + +RA +A +GN + + +++A ++++++
Sbjct: 243 IEHHQERLRIAREFGDRAA---ERRANSNLGNSHIFLGQFEDAAEHYKRTL--------- 290
Query: 355 TLISEMEKKIKEEEKKA----YIDPVKAEEAKERGNELFKNGKYADAVKEYTEA--INRN 408
+ ++ E E +A + GN ++ A++ + I +
Sbjct: 291 ----ALAVELGEREVEAQSCYSL-----------GNTYTLLHEFNTAIEYHNRHLAIAQE 335
Query: 409 PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDA 468
D A L G + +A+
Sbjct: 336 LGDR---IGEARACWSL---------------------------GNAHSAIGGHERALKY 365
Query: 469 YEKALEL 475
E+ L+L
Sbjct: 366 AEQHLQL 372
Score = 50.4 bits (121), Expect = 8e-07
Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 17/122 (13%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNH----ILFSNRSAAFAKEGNYEKALEDAE 69
L +G A + + + AI+ + ++S A+ G+Y KA++ +
Sbjct: 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHK 110
Query: 70 KTISL------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123
++L + K G+ L +GR+ E+ E L + + D
Sbjct: 111 HDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL-------TLARQLGDRL 163
Query: 124 NQ 125
++
Sbjct: 164 SE 165
Score = 48.1 bits (115), Expect = 5e-06
Identities = 26/212 (12%), Positives = 56/212 (26%), Gaps = 59/212 (27%)
Query: 295 KEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS--MSEHRTPE 352
+D +Q + + + L G D + +F+ +
Sbjct: 29 NSHDGNSQQG-SGSDGGSS---MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRT 84
Query: 353 IRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA--INRNPD 410
+ + S++ GN F G Y A++ + + ++ +
Sbjct: 85 LSAIYSQL------------------------GNAYFYLGDYNKAMQYHKHDLTLAKSMN 120
Query: 411 DPKY----YSNRAACYTKLAAFDLGLKDCETCLKLDPKF--------------------- 445
D N + FD CE L L +
Sbjct: 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180
Query: 446 --LKGWIRKGKILQGMQQQSKAIDAYEKALEL 475
L + ++A++ Y++ L+L
Sbjct: 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212
Score = 44.6 bits (106), Expect = 5e-05
Identities = 12/107 (11%), Positives = 35/107 (32%), Gaps = 17/107 (15%)
Query: 29 EAIEAYSEAIKL------DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKG- 81
++ + + + + G+ + + I + +
Sbjct: 26 GGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTL 85
Query: 82 ---YSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125
YS+ G+A YLG Y +++ ++ L + +++ D +
Sbjct: 86 SAIYSQLGNAYFYLGDYNKAMQYHKHDL-------TLAKSMNDRLGE 125
Score = 38.8 bits (91), Expect = 0.004
Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 12/103 (11%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLD---GTNH---ILFSNRSAAFAKEGNYEKALEDAEKT 71
GN+ + F +A E Y + L G + + + A+E +
Sbjct: 270 GNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329
Query: 72 ISL------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKL 108
+++ + + G+A S +G ++ ++ E+ L+L
Sbjct: 330 LAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372
Score = 37.7 bits (88), Expect = 0.009
Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 19/120 (15%)
Query: 18 GNAALQANNFIEAIEAYSEAIKL-----DGTNH-ILFSNRSAAFAKEGNYEKALEDAEKT 71
GN +F AIE + E +++ D SN + G +E A E ++T
Sbjct: 230 GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289
Query: 72 ISL------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125
++L + + G+ + L + +I + L + + + D +
Sbjct: 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL-------AIAQELGDRIGE 342
Score = 34.6 bits (80), Expect = 0.079
Identities = 4/62 (6%), Positives = 17/62 (27%), Gaps = 6/62 (9%)
Query: 59 GNYEKALEDAEKTISLK------PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
G+ + + +G L G + ++ ++ ++ +
Sbjct: 22 GSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTED 81
Query: 113 EQ 114
+
Sbjct: 82 LR 83
Score = 31.9 bits (73), Expect = 0.64
Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 60 NYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAI 119
Y++ L+ + + + G+ LG ++ +I ++E L ++
Sbjct: 205 FYQENLKLMRD-LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL-------RIAREF 256
Query: 120 KDVRNQ 125
D +
Sbjct: 257 GDRAAE 262
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 68.2 bits (167), Expect = 4e-14
Identities = 14/99 (14%), Positives = 28/99 (28%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
E E G + K A+A + + P+ + + + + L +
Sbjct: 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476
LDPK + + A+ + L
Sbjct: 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115
Score = 61.7 bits (150), Expect = 7e-12
Identities = 14/99 (14%), Positives = 33/99 (33%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+G + L+ N EA A+ + + + + A+ A+ L P
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQM 115
++ + + ++++ L P EQ+
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121
Score = 51.7 bits (124), Expect = 2e-08
Identities = 10/63 (15%), Positives = 20/63 (31%)
Query: 50 NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLD 109
+ K N +A E +P+ + + G + + +I LD
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 110 PNN 112
P +
Sbjct: 82 PKD 84
Score = 47.8 bits (114), Expect = 5e-07
Identities = 15/87 (17%), Positives = 29/87 (33%)
Query: 359 EMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNR 418
+ + E +P + E + G +N K A+ A +P D ++
Sbjct: 32 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 91
Query: 419 AACYTKLAAFDLGLKDCETCLKLDPKF 445
A +T + L L P++
Sbjct: 92 AVSHTNEHNANAALASLRAWLLSQPQY 118
Score = 47.4 bits (113), Expect = 7e-07
Identities = 10/97 (10%), Positives = 21/97 (21%), Gaps = 3/97 (3%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
E G K N EA + + +P ++ E ++ I
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEH 348
+ + + A +
Sbjct: 82 PKD---IAVHAALAVSHTNEHNANAALASLRAWLLSQ 115
Score = 39.4 bits (92), Expect = 5e-04
Identities = 10/63 (15%), Positives = 22/63 (34%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LG + + A+ N A DP DI +A + + + + ++
Sbjct: 57 LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116
Query: 313 DFK 315
++
Sbjct: 117 QYE 119
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 71.9 bits (177), Expect = 7e-14
Identities = 36/258 (13%), Positives = 80/258 (31%), Gaps = 51/258 (19%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ----NNIAAVYFERKEYDQCIEQYIQ-- 306
G K + ++ + AV+ D+ + + YF +Y + +E +
Sbjct: 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70
Query: 307 ----KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362
I ++ AKA +GN K + ++ A V ++ + ++ +
Sbjct: 71 TLARTIGDQLG---EAKASGNLGNTLKVLGNFDEAIVCCQRHL-------------DISR 114
Query: 363 KIKEEEKKAYI------------DPVKAEEAKERGNELFKN-GKYADAVKEYTEA----- 404
++ ++ +A ++ G AV Y E
Sbjct: 115 ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT 174
Query: 405 -INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF------LKGWIRKGKILQ 457
+ + + N + L F + E L + +F + + G
Sbjct: 175 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 234
Query: 458 GMQQQSKAIDAYEKALEL 475
+ + A + Y+K L L
Sbjct: 235 FLGEFETASEYYKKTLLL 252
Score = 55.7 bits (135), Expect = 1e-08
Identities = 39/270 (14%), Positives = 83/270 (30%), Gaps = 73/270 (27%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVYFE------------- 293
LGN NF+EA+ + ++ D N+ VY
Sbjct: 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDT 148
Query: 294 -------RKEYDQCIEQYIQ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVY 340
R ++ Y + + +RA +A +GN + + ++++A +
Sbjct: 149 GEFPEDVRNALQAAVDLYEENLSLVTALGDRAA---QGRAFGNLGNTHYLLGNFRDAVIA 205
Query: 341 FEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAK---ERGNELFKNGKYADA 397
E+ + + K+ + KA E + GN G++ A
Sbjct: 206 HEQRL-------------LIAKEFGD----------KAAERRAYSNLGNAYIFLGEFETA 242
Query: 398 VKEYTEA------INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF------ 445
+ Y + + + + + YT L ++ + L + +
Sbjct: 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 302
Query: 446 LKGWIRKGKILQGMQQQSKAIDAYEKALEL 475
+ G + +A+ EK LE+
Sbjct: 303 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 332
Score = 52.6 bits (127), Expect = 1e-07
Identities = 26/201 (12%), Positives = 52/201 (25%), Gaps = 47/201 (23%)
Query: 285 NNIAAVYFERKEYDQCIEQYIQKIE-NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEK 343
+ + + + ++ D K ++ ++GN Y + D+ A Y
Sbjct: 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68
Query: 344 SMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAK---ERGNELFKNGKYADAVKE 400
+ + + I + + EAK GN L G + +A+
Sbjct: 69 DL-------------TLARTIGD----------QLGEAKASGNLGNTLKVLGNFDEAIVC 105
Query: 401 YTEA------INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGK 454
+N + + N Y +
Sbjct: 106 CQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQD--------------TGEF 151
Query: 455 ILQGMQQQSKAIDAYEKALEL 475
A+D YE+ L L
Sbjct: 152 PEDVRNALQAAVDLYEENLSL 172
Score = 49.9 bits (120), Expect = 1e-06
Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 17/122 (13%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNH----ILFSNRSAAFAKEGNYEKALEDAE 69
L +G ++ + + + A+++ + ++S A+ +Y KALE
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 67
Query: 70 KTISL------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123
++L + K G+ L LG + E+I + L + + D
Sbjct: 68 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL-------DISRELNDKV 120
Query: 124 NQ 125
+
Sbjct: 121 GE 122
Score = 38.8 bits (91), Expect = 0.003
Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 19/116 (16%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGT--NH----ILFSNRSAAFAKEGNYEKALEDAEKT 71
GNA + F A E Y + + L + + + +YEKA++ K
Sbjct: 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289
Query: 72 ISL------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKD 121
+++ + + G+A + LG + +++ E+ L ++ + D
Sbjct: 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL-------EISREVGD 338
Score = 38.0 bits (89), Expect = 0.007
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 19/95 (20%)
Query: 35 SEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL----KPDWPKGYSRKGSALS 90
+ ++L + K G+ + E + + YS+ G+A
Sbjct: 3 ASCLEL--------ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF 54
Query: 91 YLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125
YL Y +++ + L + I D +
Sbjct: 55 YLHDYAKALEYHHHDL-------TLARTIGDQLGE 82
Score = 37.6 bits (88), Expect = 0.009
Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 19/127 (14%)
Query: 11 VSLLKDKGNAALQANNFIEAIEAYSEA--IKLDGTNH----ILFSNRSAAFAKEGNYEKA 64
N A++ Y E + + F N GN+ A
Sbjct: 143 PGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202
Query: 65 LEDAEKTISL------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEA 118
+ E+ + + K + YS G+A +LG ++ + Y++ L +
Sbjct: 203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL-------LLARQ 255
Query: 119 IKDVRNQ 125
+KD +
Sbjct: 256 LKDRAVE 262
Score = 31.8 bits (73), Expect = 0.59
Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 12/115 (10%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGT--NH----ILFSNRSAAFAKEGNYEKALEDAEKT 71
GNA +++ +A+E + + L T + N GN+++A+ ++
Sbjct: 50 GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 109
Query: 72 ISL------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIK 120
+ + K + G+ G+ + G + ++ A+
Sbjct: 110 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 69.4 bits (170), Expect = 1e-13
Identities = 25/179 (13%), Positives = 57/179 (31%), Gaps = 17/179 (9%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
G A KK+++ AL ++ NI +Y K + + + + I
Sbjct: 12 EGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
A A + G Y + E + A ++++ + R + + K +
Sbjct: 69 HL---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR-GNQLIDYKILGLQFKLFACEVL 124
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRA-ACYTKLAAFDL 430
+ K ++ A ++ A + + ++A C K ++
Sbjct: 125 YN---------IAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEP 174
Score = 68.2 bits (167), Expect = 3e-13
Identities = 18/128 (14%), Positives = 43/128 (33%), Gaps = 18/128 (14%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS-LK 75
G N EA +A++ +I D + + R + + Y+ A++D ++ + L+
Sbjct: 43 IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102
Query: 76 PDWPKGYSR---------------KGSALSYLGRYKESISTYEEGLKLDPNNEQMK--EA 118
+ Y + +K++ + K +A
Sbjct: 103 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA 162
Query: 119 IKDVRNQE 126
++ V Q+
Sbjct: 163 MECVWKQK 170
Score = 67.8 bits (166), Expect = 4e-13
Identities = 19/127 (14%), Positives = 46/127 (36%), Gaps = 6/127 (4%)
Query: 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK 75
++G A ++ A++A+S + + + N + N +A + ++I+
Sbjct: 11 NEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 67
Query: 76 PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDM---NR 132
Y ++G +Y +I +E L N+ + I ++ + N
Sbjct: 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI 127
Query: 133 GDPFANL 139
+A
Sbjct: 128 AFMYAKK 134
Score = 66.3 bits (162), Expect = 1e-12
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 3/96 (3%)
Query: 384 RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443
G + A+ ++ + N YT L K + D
Sbjct: 12 EGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68
Query: 444 KFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479
+ ++G + ++ AI ++AL N
Sbjct: 69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 104
Score = 63.6 bits (155), Expect = 9e-12
Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 75/231 (32%)
Query: 262 NFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKAL 321
+ EA++ +N+ V ++K++ ++ + + ++
Sbjct: 2 SLVEAISLWNEGVL---------------AADKKDWKGALDAFSAVQDPH------SRIC 40
Query: 322 QRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEA 381
IG Y +++ A+ F +S+ + AY
Sbjct: 41 FNIGCMYTILKNMTEAEKAFTRSI-----------------NRDKHLAVAYFQ------- 76
Query: 382 KERGNELFKNGKYADAVKEYTEAINRNPDDP----------------KYYSNRAACYTKL 425
RG ++ KY A+K+ EA+ + + + N A Y K
Sbjct: 77 --RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 134
Query: 426 AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476
+ + + + I KA++ K +
Sbjct: 135 EEWKKAEEQLALATSMKSEPRHSKID------------KAMECVWKQKLYE 173
Score = 59.7 bits (145), Expect = 2e-10
Identities = 26/175 (14%), Positives = 48/175 (27%), Gaps = 45/175 (25%)
Query: 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKER 384
G +DWK A F +++ + +
Sbjct: 13 GVLAADKKDWKGALDAFSA--------------------VQDPHSRICFN---------I 43
Query: 385 GNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK-LDP 443
G +A K +T +INR+ Y R Y + +DL +KD + L L
Sbjct: 44 GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103
Query: 444 KFLKGWIR---------------KGKILQGMQQQSKAIDAYEKALELDASNAEAV 483
L + + ++ KA + A + + +
Sbjct: 104 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSK 158
Score = 56.3 bits (136), Expect = 3e-09
Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 17/137 (12%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE--- 309
+G KN EA + +++ D +Y++ ++YD I+ + +
Sbjct: 43 IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102
Query: 310 -NRAD--------FKLI-AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISE 359
N+ FKL + L I Y K E+WK A+ + S P S+
Sbjct: 103 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR----HSK 158
Query: 360 MEKKIKEEEKKAYIDPV 376
++K ++ K+ +PV
Sbjct: 159 IDKAMECVWKQKLYEPV 175
Score = 31.6 bits (72), Expect = 0.53
Identities = 8/60 (13%), Positives = 17/60 (28%), Gaps = 12/60 (20%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ + +A E + A + + +KA+E K +P
Sbjct: 127 IAFMYAKKEEWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWKQKLYEP 174
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 71.2 bits (175), Expect = 2e-13
Identities = 39/269 (14%), Positives = 85/269 (31%), Gaps = 51/269 (18%)
Query: 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ----NNIAAVYFERKEY 297
+ S + G K + ++ + AV+ D+ + + YF +Y
Sbjct: 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 63
Query: 298 DQCIEQYIQ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTP 351
+ +E + I ++ AKA +GN K + ++ A V ++ +
Sbjct: 64 AKALEYHHHDLTLARTIGDQLG---EAKASGNLGNTLKVLGNFDEAIVCCQRHL------ 114
Query: 352 EIRTLISEMEKKIKEEEKKAYI------------DPVKAEEAKERGNELFKN-GKYADAV 398
++ +++ ++ +A ++ G + AV
Sbjct: 115 -------DISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167
Query: 399 KEYTEA------INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL-KGWIR 451
Y E + + + N + L F + E L + +F K R
Sbjct: 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER 227
Query: 452 K-----GKILQGMQQQSKAIDAYEKALEL 475
+ G + + A + Y+K L L
Sbjct: 228 RAYSNLGNAYIFLGEFETASEYYKKTLLL 256
Score = 67.3 bits (165), Expect = 3e-12
Identities = 25/166 (15%), Positives = 57/166 (34%), Gaps = 28/166 (16%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVE-----FDPTDI-TFQNNIAAVYFERKEYDQCIEQYIQ 306
LGN FE A +Y K + D ++ Y ++Y++ I+ +++
Sbjct: 233 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292
Query: 307 ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360
++ +R +A +GN Y + + A + EK + E+
Sbjct: 293 HLAIAQELNDRIG---EGRACWSLGNAYTALGNHDQAMHFAEKHL-------------EI 336
Query: 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAIN 406
+++ ++ + ++ G N E ++N
Sbjct: 337 SREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLN 382
Score = 58.9 bits (143), Expect = 2e-09
Identities = 30/271 (11%), Positives = 77/271 (28%), Gaps = 60/271 (22%)
Query: 238 KNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVY 291
+ + + A+ Y + + D N+ +
Sbjct: 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTH 197
Query: 292 FERKEYDQCIEQYIQ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345
+ + + + Q + ++A +A +GN Y + +++ A Y++K++
Sbjct: 198 YLLGNFRDAVIAHEQRLLIAKEFGDKAA---ERRAYSNLGNAYIFLGEFETASEYYKKTL 254
Query: 346 SEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAK---ERGNELFKNGKYADAVKEYT 402
+ +++K+ +A EA+ GN Y A+ +
Sbjct: 255 -------------LLARQLKD----------RAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291
Query: 403 EA------INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLK--------- 447
+ +N + + + YT L D + E L++ +
Sbjct: 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARL 351
Query: 448 --GWIRK--GKILQGMQQQSKAIDAYEKALE 474
++ G + +L
Sbjct: 352 NLSDLQMVLGLSYSTNNSIMSENTEIDSSLN 382
Score = 55.4 bits (134), Expect = 2e-08
Identities = 38/270 (14%), Positives = 82/270 (30%), Gaps = 73/270 (27%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVYFE------------- 293
LGN NF+EA+ + ++ D N+ VY
Sbjct: 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDV 152
Query: 294 -------RKEYDQCIEQYIQ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVY 340
R ++ Y + + +RA +A +GN + + ++++A +
Sbjct: 153 GEFPEEVRDALQAAVDFYEENLSLVTALGDRAA---QGRAFGNLGNTHYLLGNFRDAVIA 209
Query: 341 FEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGN--ELFKN-GKYADA 397
E+ + + K+ + KA E + N + G++ A
Sbjct: 210 HEQRL-------------LIAKEFGD----------KAAERRAYSNLGNAYIFLGEFETA 246
Query: 398 VKEYTEA------INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD------PKF 445
+ Y + + + + + YT L ++ + L +
Sbjct: 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE 306
Query: 446 LKGWIRKGKILQGMQQQSKAIDAYEKALEL 475
+ G + +A+ EK LE+
Sbjct: 307 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 336
Score = 51.1 bits (123), Expect = 5e-07
Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 17/126 (13%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH----ILFSNRSAAFAKEGNYEKAL 65
L +G ++ + + + A+++ + ++S A+ +Y KAL
Sbjct: 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 67
Query: 66 EDAEKTISL------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAI 119
E ++L + K G+ L LG + E+I + L + +
Sbjct: 68 EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL-------DISREL 120
Query: 120 KDVRNQ 125
D +
Sbjct: 121 NDKVGE 126
Score = 50.0 bits (120), Expect = 1e-06
Identities = 14/114 (12%), Positives = 39/114 (34%), Gaps = 16/114 (14%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVYFERKEYDQCIEQYIQ 306
LGN +++E+A+ ++ K + D ++ Y +DQ + +
Sbjct: 273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332
Query: 307 ------KIENRAD----FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT 350
++ +++ ++ +G Y + + S++ R
Sbjct: 333 HLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRP 386
Score = 39.2 bits (92), Expect = 0.003
Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 19/134 (14%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGT--NH----ILFSNRSAAFAKEGNYEKALEDAEKT 71
GNA + F A E Y + + L + + + +YEKA++ K
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293
Query: 72 ISL------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125
+++ + + G+A + LG + +++ E+ L ++ + D +
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL-------EISREVGDKSGE 346
Query: 126 EMNDMNRGDPFANL 139
+N D L
Sbjct: 347 LTARLNLSDLQMVL 360
Score = 34.2 bits (79), Expect = 0.10
Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 19/115 (16%)
Query: 23 QANNFIEAIEAYSEA--IKLDGTNH----ILFSNRSAAFAKEGNYEKALEDAEKTISL-- 74
+ A++ Y E + + F N GN+ A+ E+ + +
Sbjct: 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218
Query: 75 ----KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125
K + YS G+A +LG ++ + Y++ L + +KD +
Sbjct: 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL-------LLARQLKDRAVE 266
Score = 32.7 bits (75), Expect = 0.34
Identities = 16/115 (13%), Positives = 41/115 (35%), Gaps = 12/115 (10%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGT--NH----ILFSNRSAAFAKEGNYEKALEDAEKT 71
GNA +++ +A+E + + L T + N GN+++A+ ++
Sbjct: 54 GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 113
Query: 72 ISL------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIK 120
+ + K + G+ G+ + G + + ++ A+
Sbjct: 114 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.0 bits (173), Expect = 6e-13
Identities = 74/513 (14%), Positives = 152/513 (29%), Gaps = 131/513 (25%)
Query: 94 RYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMND-MNRGDP-------FANLFSDPN 144
+YK+ +S +E+ + + + +++ K + +E++ + D F L S
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 145 ----IFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMS 200
FV+ L FL P IK Q+ PS+MT + R
Sbjct: 77 EMVQKFVEEVLRI-NYKFLMSP-----IKTEQRQPSMMTRMYIEQR-------------- 116
Query: 201 STMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKE-------- 252
+ + D Q + P K L + K
Sbjct: 117 --------DRLYNDNQVFAKYNVSRLQPYLK--------LRQALLELRPAKNVLIDGVLG 160
Query: 253 -----LGNEAYKKKNFEEALA---HY-NKAVEFDPTDI-----TFQNNIAAVYFERKEYD 298
+ + + + + N P + I + R ++
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 299 QCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKV--YFEKSMSEHRTPEIRTL 356
I+ I I+ L +K + NC + + +NAK F + L
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYE---NCLLVLLNVQNAKAWNAFN--------LSCKIL 269
Query: 357 ISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKE-YTEAINRNPDD-PKY 414
++ K++ D + A + D VK + ++ P D P
Sbjct: 270 LTTRFKQV--------TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-- 319
Query: 415 YSNRAACYT---KLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEK 471
R T +L+ ++D W + + I++
Sbjct: 320 ---REVLTTNPRRLSIIAESIRD-------GLATWDNWKH-----VNCDKLTTIIESSLN 364
Query: 472 ALELDASNAEAVEGYRQCSI-AVSSN-PEEVRKR---AMGDPEVQQILRDPAMRLILEQM 526
LE AE + + + S+ S++ P + + +V ++ ++E+
Sbjct: 365 VLE----PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK- 419
Query: 527 QNDPRALSDH-------LKNPEIASKIQKLVNS 552
Q +S +K + + +V+
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Score = 64.1 bits (155), Expect = 8e-11
Identities = 55/397 (13%), Positives = 120/397 (30%), Gaps = 122/397 (30%)
Query: 238 KNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE---R 294
K++ D +S ++E+ + K+ F T ++ Q + + E R
Sbjct: 36 KDVQDMPKSILSKEEI-DHIIMSKDAVSGTLRL-----FW-TLLSKQEEMVQKFVEEVLR 88
Query: 295 KEYD--------QCI------EQYIQKIE--------------NRAD-FKLIAKALQRI- 324
Y + YI++ + +R + + +AL +
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 325 ----------GNCYK-----------KMEDWKNAKVYFEKSMSEHRTPE-----IRTLIS 358
K K++ + K+++ ++ +PE ++ L+
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLY 207
Query: 359 EMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNR 418
+++ + ++ + L K+ Y + + + N + K
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-----LVLLNVQNAKA---- 258
Query: 419 AACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKI---LQGMQQQSKAIDAYEKALEL 475
AF+L C+ L R ++ L ++D + L
Sbjct: 259 ------WNAFNLS---CKILLT---------TRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 476 DASNAEAVEGYRQC-SIAVSSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALS 534
D E + P EV +P + +I E +++ A
Sbjct: 301 D----EVKSLLLKYLDCRPQDLPREVLT---TNP-----R---RLSIIAESIRDGL-ATW 344
Query: 535 DHLKNPEIASKIQKLVNSGLIVL-------AFIFLSI 564
D+ K+ K+ ++ S L VL F LS+
Sbjct: 345 DNWKHVNC-DKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Score = 50.6 bits (120), Expect = 1e-06
Identities = 55/427 (12%), Positives = 129/427 (30%), Gaps = 114/427 (26%)
Query: 1 MENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN 60
+E LQ L+Y++ + + + ++N I + ++ L ++
Sbjct: 199 LEMLQKLLYQID--PNWTSRSDHSSNIKLRIHSIQAELR------RLLKSKP-------- 242
Query: 61 YEKAL------EDAE---------KTISLKPDWPKGYSRKGS---ALSYLGRYKESISTY 102
YE L ++A+ K + +R LS S+ +
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLT--------TRFKQVTDFLSAATTTHISLDHH 294
Query: 103 EEGLKLDPNNEQMKEAIKDVRNQEMND----MNRGDPFA-NLFSDPNIFVQLQLDPRTKP 157
L D ++K + + D + +P ++ ++ ++ T
Sbjct: 295 SMTLTPD----EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE-----SIRDGLATWD 345
Query: 158 FLSDPSYVQMIKEIQK-----DPSLMTTKLKDPRMMTTLSVL-LGVNMSSTM-----GDG 206
+ ++ I+ +P+ LSV ++ + + D
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR------LSVFPPSAHIPTILLSLIWFDV 399
Query: 207 DAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEA 266
++ V +K + ++ K + E NE ++
Sbjct: 400 IKSDVMVVVNKLHKYSL-----VEKQPKESTISIPSIYLELKVKLE--NEYALHRSI--- 449
Query: 267 LAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYI----QKIEN-------RA--- 312
+ HYN FD D+ DQ +I + IE+ R
Sbjct: 450 VDHYNIPKTFDSDDLIPPYL-----------DQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNA----KVYFEKSMSEHRTPEIRTLISEMEKKIKEEE 368
DF+ + + ++ + N K Y + + ++ P+ L++ + + + E
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFY-KPYICDN-DPKYERLVNAILDFLPKIE 556
Query: 369 KKAYIDP 375
+
Sbjct: 557 ENLICSK 563
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 67.9 bits (166), Expect = 2e-12
Identities = 44/260 (16%), Positives = 85/260 (32%), Gaps = 38/260 (14%)
Query: 233 AEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVE-------FDPTDITFQN 285
AE E ++D+ A+ ++ Y K ++ H +A++ + I
Sbjct: 127 AEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186
Query: 286 NIAAVYFERKEYDQCIEQYIQKIENR---ADFKLIAKALQRIGNCYKKMEDWKNAKVYFE 342
IA Y + K YD+ + +E + + IA +L I N Y + D + A +F+
Sbjct: 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246
Query: 343 KSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402
K+ +K+ + K L K G+ A +
Sbjct: 247 KA------------AKVSREKVPDLLPKVLF---------GLSWTLCKAGQTQKAFQFIE 285
Query: 403 EAINRNPD-DPKYYSNRAACYTKLAAFDLGLKDCETCLK-LDPKFLKGWIRK-----GKI 455
E ++ K+Y + + + L + K L +I +
Sbjct: 286 EGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345
Query: 456 LQGMQQQSKAIDAYEKALEL 475
+ +A Y K L+
Sbjct: 346 FESSCHFEQAAAFYRKVLKA 365
Score = 56.4 bits (136), Expect = 1e-08
Identities = 29/252 (11%), Positives = 67/252 (26%), Gaps = 38/252 (15%)
Query: 238 KNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEY 297
+ + D K + E +++ F++KEY
Sbjct: 63 QLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKY-----YSLFFRGMYEFDQKEY 117
Query: 298 DQCIEQY---IQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIR 354
+ I Y +++ +D A+ ++ Y M+ + + +++
Sbjct: 118 VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD-------- 169
Query: 355 TLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA------INRN 408
I + ++ Y A+ A I +
Sbjct: 170 --IYQNHPLYSIRTIQSLFV---------IAGNYDDFKHYDKALPHLEAALELAMDIQND 218
Query: 409 PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK-----GKILQGMQQQS 463
N A Y + + ++ + K+ + + + K L Q
Sbjct: 219 RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQ 278
Query: 464 KAIDAYEKALEL 475
KA E+ L+
Sbjct: 279 KAFQFIEEGLDH 290
Score = 39.8 bits (93), Expect = 0.002
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 18 GNAALQANNFIEAIEAYSEAI----KLDGTNHILFS--NRSAAFAKEGNYEKALEDAEKT 71
++ +A+ A+ + I S N + ++ + G+ + A+E +K
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248
Query: 72 ISLK-----PDWPKGYSRKGSALSYLGRYKESISTYEEGLKL 108
+ PK L G+ +++ EEGL
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290
Score = 35.6 bits (82), Expect = 0.043
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 13/108 (12%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKL--DGTNHI----LFSNRSAAFAKEGNY------ 61
L +G ++EAI Y EA K ++ I + A+
Sbjct: 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH 163
Query: 62 -EKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKL 108
+AL+ + + Y +++ E L+L
Sbjct: 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL 211
Score = 32.5 bits (74), Expect = 0.33
Identities = 16/126 (12%), Positives = 38/126 (30%), Gaps = 8/126 (6%)
Query: 5 QSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKA 64
Q ++ + K GN +E IE + + + LF F + Y +A
Sbjct: 63 QLMLDYLEPGKTYGNR-PTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQ-KEYVEA 120
Query: 65 LEDAEKTISL------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEA 118
+ + + + + + A ++ + S+ + L + N+
Sbjct: 121 IGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180
Query: 119 IKDVRN 124
Sbjct: 181 TIQSLF 186
Score = 30.9 bits (70), Expect = 1.2
Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 15/109 (13%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSA--------AFAKEGNYEKALEDAE 69
A ++ +A+ + NH L+S R+ + +Y+KAL E
Sbjct: 148 AEAYYHMKQTHVSMYHILQALDIY-QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLE 206
Query: 70 KTISL------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ L ++ G + ++ +++ K+
Sbjct: 207 AALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK 255
Score = 30.9 bits (70), Expect = 1.3
Identities = 9/98 (9%), Positives = 23/98 (23%), Gaps = 7/98 (7%)
Query: 18 GNAALQANNFIEAIEAYSEAIKL-DGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS--- 73
+A +A + E + +H + +S
Sbjct: 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327
Query: 74 ---LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKL 108
L + ++++ + Y + LK
Sbjct: 328 KKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 67.5 bits (165), Expect = 3e-12
Identities = 38/260 (14%), Positives = 86/260 (33%), Gaps = 37/260 (14%)
Query: 233 AEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVE-------FDPTDITFQN 285
AE + + D A+ ++ Y K ++ + +A E ++ + +
Sbjct: 129 AESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188
Query: 286 NIAAVYFERKEYDQCIEQYIQKIENR---ADFKLIAKALQRIGNCYKKMEDWKNAKVYFE 342
A + + K+Y+ I + + +L+ + L IG C +++A YF+
Sbjct: 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248
Query: 343 KSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402
++++ + E E I +AY +K GK A + ++
Sbjct: 249 RAIA----------VFE-ESNILPSLPQAYFL---------ITQIHYKLGKIDKAHEYHS 288
Query: 403 EAINRNPD-DPKYYSNRAACYTKLAAFDLGLKDCETCLK-LDPKFLKGWIRK-----GKI 455
+ + + Y + L + + L+ K L + K
Sbjct: 289 KGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348
Query: 456 LQGMQQQSKAIDAYEKALEL 475
+ KA + K ++
Sbjct: 349 YHERKNFQKASAYFLKVEQV 368
Score = 58.3 bits (141), Expect = 2e-09
Identities = 14/121 (11%), Positives = 46/121 (38%), Gaps = 19/121 (15%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-----DPTDITFQNNIAAVYFERKEYDQCIEQYIQK 307
+ YK ++A +++K + + D ++ + ++Y ++ I+ +
Sbjct: 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS-GPDEEAIQGFFDF 328
Query: 308 IENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEE 367
+E++ + + + Y + ++++ A YF K ++ + I+
Sbjct: 329 LESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE-------------QVRQLIQGG 375
Query: 368 E 368
Sbjct: 376 V 376
Score = 48.7 bits (116), Expect = 3e-06
Identities = 26/244 (10%), Positives = 70/244 (28%), Gaps = 40/244 (16%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDIT------FQNNIAAVYFERKEYDQCIEQY-- 304
L + + L+ ++ +T F +++EY I+ +
Sbjct: 69 LEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKK 128
Query: 305 -IQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKK 363
K+ D A+ ++ Y M+ + Y ++ I + +
Sbjct: 129 AESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE----------IYKEHEA 178
Query: 364 IKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA--INRNPDDPKY----YSN 417
+ + +Y DA+ + +A + P+ N
Sbjct: 179 YNIRLLQCHSL---------FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYN 229
Query: 418 RAACYTKLAAFDLGLKDCETCLKLD------PKFLKGWIRKGKILQGMQQQSKAIDAYEK 471
C + ++ + + + + P + + +I + + KA + + K
Sbjct: 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289
Query: 472 ALEL 475
+
Sbjct: 290 GMAY 293
Score = 35.6 bits (82), Expect = 0.036
Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 12/103 (11%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNH------ILFSNRSAAFAKEGNYEKALEDAEKT 71
L + +AI + +A + N + YE A+ ++
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250
Query: 72 ISL------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKL 108
I++ P P+ Y LG+ ++ + +G+
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293
Score = 35.2 bits (81), Expect = 0.055
Identities = 14/105 (13%), Positives = 37/105 (35%), Gaps = 13/105 (12%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNH------ILFSNRSAAFAKEGNY-------EK 63
+G L ++ AI+ + +A F S ++ +
Sbjct: 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168
Query: 64 ALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKL 108
A E ++ + + +S + L +Y+++IS +++ +
Sbjct: 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM 213
Score = 30.6 bits (69), Expect = 1.4
Identities = 10/114 (8%), Positives = 32/114 (28%), Gaps = 7/114 (6%)
Query: 2 ENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAI----KLDGTNHILFSNRSAAFAK 57
E L + +A E +S+ + K ++ +
Sbjct: 255 EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL 314
Query: 58 EGNYEKALEDAEKTISLKPDWP---KGYSRKGSALSYLGRYKESISTYEEGLKL 108
G E+A++ + K + ++++ + + + ++
Sbjct: 315 SGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 62.4 bits (152), Expect = 3e-12
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 29 EAIEAYSEAIKLDGTNHILF---SNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRK 85
+A+ Y +AI L + F G Y KA + P+
Sbjct: 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67
Query: 86 GSALSYLGRYKESISTYEEGLKLDPNNEQMKE 117
L LGRY++ + + + ++E ++
Sbjct: 68 AMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99
Score = 55.5 bits (134), Expect = 1e-09
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 4/100 (4%)
Query: 392 GKYADAVKEYTEAINRNPDDPKY---YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKG 448
G A AV Y +AI Y + + L + +K P
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 449 WIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQ 488
+ +L + + + ++ K + + S+ E ++ Y+Q
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIA-ETSDDETIQSYKQ 102
Score = 48.9 bits (117), Expect = 2e-07
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 59 GNYEKALEDAEKTISLK---PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
G +A+ EK I+ D + Y GS LG Y+++ + G+K PN+
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60
Score = 46.2 bits (110), Expect = 2e-06
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LG+ + +A A V+ P + A V + Y+Q +E ++ I +
Sbjct: 33 LGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92
Query: 313 DFKLIA---KALQ 322
D + I +A+
Sbjct: 93 DDETIQSYKQAIL 105
Score = 45.9 bits (109), Expect = 2e-06
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 11/89 (12%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
G+ + +A + +K + L + G YE+ +E K I+ D
Sbjct: 34 GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGL 106
+ YK++I Y + L
Sbjct: 94 DET-----------IQSYKQAILFYADKL 111
Score = 44.7 bits (106), Expect = 6e-06
Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 11/90 (12%)
Query: 384 RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443
G+ G+Y A + + P+ A L ++ G++ +
Sbjct: 33 LGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92
Query: 444 KFLKGWIRKGKILQGMQQQSKAIDAYEKAL 473
+ +Q +AI Y L
Sbjct: 93 DD-----------ETIQSYKQAILFYADKL 111
Score = 39.7 bits (93), Expect = 4e-04
Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 26/125 (20%)
Query: 296 EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRT 355
Q + Y + I + K +A+ +G+ ++ + +++ A+ +
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK--------- 55
Query: 356 LISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYY 415
P L+ G+Y V+ + I DD
Sbjct: 56 -----------------QFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ 98
Query: 416 SNRAA 420
S + A
Sbjct: 99 SYKQA 103
Score = 36.6 bits (85), Expect = 0.003
Identities = 9/93 (9%), Positives = 25/93 (26%), Gaps = 6/93 (6%)
Query: 263 FEEALAHYNKAVEF---DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAK 319
+A+ +Y KA+ + + + EY + ++ +
Sbjct: 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH---QA 62
Query: 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE 352
+ ++ K ++E E
Sbjct: 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDE 95
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 66.5 bits (162), Expect = 4e-12
Identities = 37/247 (14%), Positives = 70/247 (28%), Gaps = 47/247 (19%)
Query: 257 AYKKKNFEEALAHYNKAVEFDPTDITFQ-----------NNIAAVYFERKEYDQCIEQYI 305
A + EA H KA ++ T A + K+ +Q + Y+
Sbjct: 1 AIAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYL 60
Query: 306 QKIE---NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362
Q+ E N AKA ++ G K ++ A Y EK+ +
Sbjct: 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG---------- 110
Query: 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPK------YYS 416
P A A +R +L + + AV Y +A ++ +
Sbjct: 111 -----------TPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIG 159
Query: 417 NRAACYTKLAAFDLGLKDCETCLKLDPKFL------KGWIRKGKILQGMQQQSKAIDAYE 470
+ + FD + + + K I + + A
Sbjct: 160 KASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219
Query: 471 KALELDA 477
++ +
Sbjct: 220 ESYSIPG 226
Score = 58.8 bits (142), Expect = 1e-09
Identities = 11/127 (8%), Positives = 35/127 (27%), Gaps = 13/127 (10%)
Query: 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD------ITFQNNIAAVYFERK 295
+A G + + + +A+ Y +A + + + ++
Sbjct: 111 TPDTAAMALDRAG-KLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ 169
Query: 296 EYDQCIEQYIQKIENRADFKL---IAKALQRIGNCYKKMEDWKNAKVYFEKSM---SEHR 349
++D+ ++ + + K D+ A+ +S
Sbjct: 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSG 229
Query: 350 TPEIRTL 356
+ + L
Sbjct: 230 SEDCAAL 236
Score = 51.4 bits (123), Expect = 3e-07
Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 8/117 (6%)
Query: 238 KNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEF-----DPTDITFQNNIAAVYF 292
N +AK ++ G + EA+ + KA P + A
Sbjct: 67 ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM 126
Query: 293 ERKEYDQCIEQYIQ---KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346
E + + + Y Q EN + A+ + + + + + A +K S
Sbjct: 127 EPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183
Score = 38.7 bits (90), Expect = 0.004
Identities = 18/144 (12%), Positives = 45/144 (31%), Gaps = 11/144 (7%)
Query: 2 ENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFS-----NRSAAFA 56
N +SL + + G EA++ +A + N + +R+
Sbjct: 67 ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM 126
Query: 57 KEGNYEKALE------DAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDP 110
+ + KA+ + + + L ++ E+ ++ ++ +
Sbjct: 127 EPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186
Query: 111 NNEQMKEAIKDVRNQEMNDMNRGD 134
E K Q + ++R D
Sbjct: 187 EMENYPTCYKKCIAQVLVQLHRAD 210
Score = 32.2 bits (73), Expect = 0.41
Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 11/118 (9%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHIL------FSNRSAAFAKEGNYEKALEDAEKT 71
A A +A +AY + + N L F +A++ EK
Sbjct: 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA 102
Query: 72 ISLKPDWPK-----GYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRN 124
+ + + L +++ Y++ + N E++++A + +
Sbjct: 103 SVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGK 160
Score = 31.0 bits (70), Expect = 1.0
Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 23/100 (23%)
Query: 21 ALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPK 80
A+ A EA E ++A K +++ + +Y+ A +
Sbjct: 1 AIAAQKISEAHEHIAKAEKY---------LKTSFMKWKPDYDSAASE------------- 38
Query: 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIK 120
Y++ A + +++ Y + + NN + A K
Sbjct: 39 -YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAK 77
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 62.2 bits (150), Expect = 1e-11
Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 23/130 (17%)
Query: 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKL------------DGTNHILFSNRSAAF 55
V L L A + EA A+++ G + + + A
Sbjct: 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 67
Query: 56 AKEGNYEKALEDAEKTIS-------LKPD----WPKGYSRKGSALSYLGRYKESISTYEE 104
A ++++AL A+K + L D W + AL LGR E++ +++
Sbjct: 68 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127
Query: 105 GLKLDPNNEQ 114
+++ +
Sbjct: 128 VVEMIEERKG 137
Score = 51.4 bits (122), Expect = 6e-08
Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 23/150 (15%)
Query: 370 KAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKY------------YSN 417
K + V A A G+Y +A A+ + P ++
Sbjct: 3 KPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAG 62
Query: 418 RAACYTKLAAFDLGLKDCETCLK-------LDPKFLKGWI----RKGKILQGMQQQSKAI 466
A L +FD L + L L+ K WI + L G+ + ++A+
Sbjct: 63 LAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAM 122
Query: 467 DAYEKALELDASNAEAVEGYRQCSIAVSSN 496
++K +E+ G +
Sbjct: 123 PEFKKVVEMIEERKGETPGKERMMEVAIDR 152
Score = 39.5 bits (91), Expect = 7e-04
Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 23/142 (16%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT------------DITFQNNIAAVYFER 294
A ++EA A+ +A+E T D +A
Sbjct: 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL 70
Query: 295 KEYDQCIEQYIQKIE--------NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS-- 344
+ +D+ + + + N+ + KL A+ + A F+K
Sbjct: 71 RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130
Query: 345 MSEHRTPEIRTLISEMEKKIKE 366
M E R E M + +
Sbjct: 131 MIEERKGETPGK-ERMMEVAID 151
Score = 38.7 bits (89), Expect = 0.001
Identities = 11/95 (11%), Positives = 32/95 (33%), Gaps = 14/95 (14%)
Query: 57 KEGNYEKALEDAEKTISLKPDWPKG------------YSRKGSALSYLGRYKESISTYEE 104
G Y++A + + + + P ++ AL+ L + E++ + ++
Sbjct: 23 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK 82
Query: 105 GLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANL 139
L ++ + + + +R L
Sbjct: 83 ALHYFNRRGELNQDEGKLWISAVY--SRALALDGL 115
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 62.6 bits (152), Expect = 1e-11
Identities = 16/106 (15%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNY---EKALEDAEKTISL 74
G L N++ ++ AY +A++L G N L++ + + + + +K ++L
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110
Query: 75 KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIK 120
+ S Y ++I +++ + L+ + ++
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE 156
Score = 55.6 bits (134), Expect = 3e-09
Identities = 18/129 (13%), Positives = 48/129 (37%), Gaps = 3/129 (2%)
Query: 359 EMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNR 418
E +++ + K +P +E+ G Y++++ Y +A+ ++ + Y+
Sbjct: 25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAAL 84
Query: 419 AACYTKLA---AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475
A A + L LD + + ++AI+ ++K ++L
Sbjct: 85 ATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144
Query: 476 DASNAEAVE 484
++ +
Sbjct: 145 NSPRINRTQ 153
Score = 54.5 bits (131), Expect = 7e-09
Identities = 14/108 (12%), Positives = 37/108 (34%), Gaps = 3/108 (2%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
+ ++ ++ ++ + I NP + + ++ Y + L
Sbjct: 10 YQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQ 69
Query: 438 CLKLDPKFLKGWIRKGKIL---QGMQQQSKAIDAYEKALELDASNAEA 482
L+L + + + +L ++ +KAL LD++ A
Sbjct: 70 ALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA 117
Score = 50.2 bits (120), Expect = 2e-07
Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 3/113 (2%)
Query: 5 QSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKA 64
Q++ E +D + N ++A + I+ + N ++ + + +Y +
Sbjct: 4 QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNS 63
Query: 65 LEDAEKTISLKPDWPKGYSRKGSALSYLGRYK---ESISTYEEGLKLDPNNEQ 114
L + + L+ + + Y+ + L Y ++ + ++ L LD N
Sbjct: 64 LLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEIT 116
Score = 46.8 bits (111), Expect = 3e-06
Identities = 14/67 (20%), Positives = 27/67 (40%)
Query: 50 NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLD 109
+ FA + N E L+ + I P + ++ G + Y S+ Y + L+L
Sbjct: 15 DPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR 74
Query: 110 PNNEQMK 116
N ++
Sbjct: 75 GENAELY 81
Score = 44.9 bits (106), Expect = 2e-05
Identities = 23/173 (13%), Positives = 56/173 (32%), Gaps = 26/173 (15%)
Query: 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQ 303
+ +++++ ++ ++N E L + +P + + Y + +Y +
Sbjct: 7 RAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLA 66
Query: 304 YIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKK 363
Y +ALQ G + Y S+H T + R +I +
Sbjct: 67 Y-------------RQALQLRGENAELYAALATVLYY---QASQHMTAQTRAMIDKALA- 109
Query: 364 IKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYS 416
+D + ++ F YA A++ + + ++ N
Sbjct: 110 ---------LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153
Score = 41.8 bits (98), Expect = 2e-04
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 436 ETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486
+ ++ +P+ + W G+ S ++ AY +AL+L NAE
Sbjct: 34 QDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAAL 84
Score = 37.9 bits (88), Expect = 0.003
Identities = 13/84 (15%), Positives = 30/84 (35%)
Query: 257 AYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKL 316
+ + A +KA+ D +IT +A+ F + Y Q IE + + ++ +
Sbjct: 91 QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150
Query: 317 IAKALQRIGNCYKKMEDWKNAKVY 340
+ ++ I +
Sbjct: 151 RTQLVESINMAKLLQRRSDLEHHH 174
Score = 27.5 bits (61), Expect = 9.4
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN 44
E++ L + A N+ +AIE + + + L+
Sbjct: 113 NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 59.7 bits (146), Expect = 2e-11
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 48 FSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107
+ N A+ K+G+Y++A+E +K + L P+ + + G+A G Y E+I Y++ L+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 108 LDPNN 112
LDPNN
Sbjct: 72 LDPNN 76
Score = 57.4 bits (140), Expect = 1e-10
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GNA + ++ EAIE Y +A++LD N + N A+ K+G+Y++A+E +K + L P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 77 DWPKGYSRKGSALSYLG 93
+ + G+A G
Sbjct: 75 NNAEAKQNLGNAKQKQG 91
Score = 47.8 bits (115), Expect = 3e-07
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 409 PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDA 468
+ + + N Y K +D ++ + L+LDP + W G +AI+
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 469 YEKALELDASNAEA 482
Y+KALELD +NAEA
Sbjct: 66 YQKALELDPNNAEA 79
Score = 47.4 bits (114), Expect = 3e-07
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LGN YK+ +++EA+ +Y KA+E DP + N+ Y+++ +YD+ IE Y + +E
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 313 DFKLIAKALQRIGNCYKK 330
+ A+A Q +GN +K
Sbjct: 75 NN---AEAKQNLGNAKQK 89
Score = 38.1 bits (90), Expect = 6e-04
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 384 RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
GN +K G Y +A++ Y +A+ +P++ + N K
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90
Score = 35.8 bits (84), Expect = 0.003
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 73 SLKP-DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
++ P + + + G+A G Y E+I Y++ L+LDPNN
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 42
Score = 31.6 bits (73), Expect = 0.14
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
N+ Y+++ +YD+ IE Y + +E + A+A +GN Y K D+ A Y++K+
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 345 MS 346
+
Sbjct: 70 LE 71
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 61.4 bits (150), Expect = 2e-11
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 15/104 (14%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVYFERKEYDQCIEQYIQ 306
LGN FE A +Y K + D ++ Y ++Y++ I+ +++
Sbjct: 55 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 114
Query: 307 ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
++++R +A +GN Y + + A + EK
Sbjct: 115 HLAIAQELKDRIG---EGRACWSLGNAYTALGNHDQAMHFAEKH 155
Score = 61.0 bits (149), Expect = 3e-11
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 15/104 (14%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVYFERKEYDQCIEQYIQ 306
LGN Y NF +A+ + + + D +N+ Y E++ E Y +
Sbjct: 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74
Query: 307 ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
++++RA A++ +GN Y ++D++ A Y K
Sbjct: 75 TLLLARQLKDRAV---EAQSCYSLGNTYTLLQDYEKAIDYHLKH 115
Score = 46.8 bits (112), Expect = 3e-06
Identities = 25/202 (12%), Positives = 60/202 (29%), Gaps = 67/202 (33%)
Query: 285 NNIAAVYFERKEYDQCIEQYIQ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAK 338
N+ ++ + + + Q + ++A A +GN Y + +++ A
Sbjct: 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA---ERIAYSNLGNAYIFLGEFETAS 69
Query: 339 VYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGN--ELFKN-GKYA 395
Y++K++ + +++K+ +A EA+ + + Y
Sbjct: 70 EYYKKTL-------------LLARQLKD----------RAVEAQSCYSLGNTYTLLQDYE 106
Query: 396 DAVKEYTEA--INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKG 453
A+ + + I + D L G
Sbjct: 107 KAIDYHLKHLAIAQELKD---RIGEGRACWSL---------------------------G 136
Query: 454 KILQGMQQQSKAIDAYEKALEL 475
+ +A+ EK LE+
Sbjct: 137 NAYTALGNHDQAMHFAEKHLEI 158
Score = 37.9 bits (89), Expect = 0.003
Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 19/120 (15%)
Query: 18 GNAALQANNFIEAIEAYSEAI----KLDGTNHI--LFSNRSAAFAKEGNYEKALEDAEKT 71
GN NF +A+ A+ + + + +SN A+ G +E A E +KT
Sbjct: 16 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75
Query: 72 ISL------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125
+ L + + G+ + L Y+++I + + L + + +KD +
Sbjct: 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL-------AIAQELKDRIGE 128
Score = 35.6 bits (83), Expect = 0.015
Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 19/116 (16%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNH------ILFSNRSAAFAKEGNYEKALEDAEKT 71
GNA + F A E Y + + L + + +YEKA++ K
Sbjct: 56 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115
Query: 72 ISL------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKD 121
+++ + + G+A + LG + +++ E+ L ++ + D
Sbjct: 116 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL-------EISREVGD 164
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 64.3 bits (156), Expect = 3e-11
Identities = 33/285 (11%), Positives = 81/285 (28%), Gaps = 49/285 (17%)
Query: 205 DGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFE 264
AE D+DP P + P + +++ D R+ + E E
Sbjct: 67 RDRAEWADIDPVPQNDGPNPVVQIIYSD---KFRDVYDYFRAVLQRDER---------SE 114
Query: 265 EALAHYNKAVEFDPTDITFQNNIAAVYFE-RKEYDQCIEQYIQKIENRADFKLIAKALQR 323
A A+E + + T + + +K+ + + IE + +
Sbjct: 115 RAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---YQVWHH 171
Query: 324 IGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKE 383
+ + D + ++ D +
Sbjct: 172 RRVLVEWLRDPSQELEFIADILN--------------------------QDAKNYHAWQH 205
Query: 384 RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG------LKDCET 437
R + + + + ++ + + + + ++ R + ++ ++
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 265
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+KL P W ILQ K + + L+L S++
Sbjct: 266 MIKLVPHNESAWNYLKGILQDRGLS-KYPNLLNQLLDLQPSHSSP 309
Score = 55.1 bits (132), Expect = 3e-08
Identities = 13/103 (12%), Positives = 39/103 (37%), Gaps = 6/103 (5%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ + + +E ++ + D N+ + +R + ++ L+ ++ +
Sbjct: 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231
Query: 77 DWPKGYSRKGSALSYLGRY------KESISTYEEGLKLDPNNE 113
++++ +S Y + + E +KL P+NE
Sbjct: 232 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE 274
Score = 53.9 bits (129), Expect = 7e-08
Identities = 10/88 (11%), Positives = 29/88 (32%)
Query: 25 NNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSR 84
+ E + + I+ N+ ++ +R + + LE ++ +
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205
Query: 85 KGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + + + ++ LK D N
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRN 233
Score = 49.3 bits (117), Expect = 2e-06
Identities = 12/97 (12%), Positives = 33/97 (34%), Gaps = 1/97 (1%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAK-EGNYEKALEDAEKTISLK 75
+ A + +AI+L+ N+ ++ R + + + + I +
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162
Query: 76 PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
P + + + + +L + + + L D N
Sbjct: 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 199
Score = 41.6 bits (97), Expect = 5e-04
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Query: 37 AIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGR-Y 95
I ++ A ++ E+A + I L + + L L +
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 96 KESISTYEEGLKLDPNNEQ 114
E ++ ++ P N Q
Sbjct: 149 HEEMNYITAIIEEQPKNYQ 167
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 59.2 bits (144), Expect = 3e-11
Identities = 16/75 (21%), Positives = 31/75 (41%)
Query: 408 NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAID 467
+P+DP A + K L E ++ DP ++ + GK+ + + + AID
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 468 AYEKALELDASNAEA 482
Y + +E+
Sbjct: 63 TYAQGIEVAREEGTQ 77
Score = 56.1 bits (136), Expect = 4e-10
Identities = 15/63 (23%), Positives = 26/63 (41%)
Query: 50 NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLD 109
+ K N +AL E+ + PD+ Y G L R ++I TY +G+++
Sbjct: 12 ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71
Query: 110 PNN 112
Sbjct: 72 REE 74
Score = 50.7 bits (122), Expect = 3e-08
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE--- 309
L E K N ALA + + VE DP + ++ +Y D I+ Y Q IE
Sbjct: 13 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72
Query: 310 NRADFKLIAKALQRIGNCYKKME 332
K L + + K E
Sbjct: 73 EEGT----QKDLSELQDAKLKAE 91
Score = 45.7 bits (109), Expect = 2e-06
Identities = 8/87 (9%), Positives = 26/87 (29%), Gaps = 2/87 (2%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
L+ +N A+ + E ++ D + + + + + A++ + I + +
Sbjct: 14 AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73
Query: 78 WPKGYSRK--GSALSYLGRYKESISTY 102
A + +
Sbjct: 74 EGTQKDLSELQDAKLKAEGLEHHHHHH 100
Score = 40.7 bits (96), Expect = 9e-05
Identities = 13/97 (13%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 277 DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKN 336
DP D + +A + + + + + + +E D+ +G Y++++ +
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDY---VGTYYHLGKLYERLDRTDD 59
Query: 337 AKVYFEKSMS-EHRTPEIRTLISEMEKKIKEEEKKAY 372
A + + + + L SE++ + E +
Sbjct: 60 AIDTYAQGIEVAREEGTQKDL-SELQDAKLKAEGLEH 95
Score = 31.1 bits (71), Expect = 0.21
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 76 PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN 111
P+ P +++ +EE ++ DP+
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD 39
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 61.7 bits (149), Expect = 1e-10
Identities = 32/240 (13%), Positives = 70/240 (29%), Gaps = 34/240 (14%)
Query: 251 KELGNEAYKKKNFEEALAHYNKAVE--FDPTDITFQNNIAAVYFERKEYDQCIEQYIQKI 308
+ + +A ++ + D T+ TF A++YF + D + Q
Sbjct: 69 RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGD 128
Query: 309 ENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEE 368
L A+ K++ A+ +K +
Sbjct: 129 S------LECMAMT--VQILLKLDRLDLARKELKKMQDQDE------------------- 161
Query: 369 KKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAF 428
D + A + K DA + E ++ + +AAC+ +
Sbjct: 162 -----DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216
Query: 429 DLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQ 488
+ + L D + I + Q + + + + Y L+ + ++ YR
Sbjct: 217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRA 276
Score = 58.6 bits (141), Expect = 1e-09
Identities = 28/254 (11%), Positives = 68/254 (26%), Gaps = 14/254 (5%)
Query: 257 AYKKKNFEEALAHYNKAVEFDPT-DITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFK 315
A+ ++++ + + P D+ + Y +++Y ++ E +
Sbjct: 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLD------EIKPSSA 62
Query: 316 LIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISE-----MEKKIKEEEKK 370
+A++ ++ MS T + + + +
Sbjct: 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR 122
Query: 371 AYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDL 430
E L K + A KE + +++ D A L
Sbjct: 123 TLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKL 182
Query: 431 G--LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQ 488
+ L + + A ++AL+ D+ + E +
Sbjct: 183 QDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVV 242
Query: 489 CSIAVSSNPEEVRK 502
S + PE +
Sbjct: 243 LSQHLGKPPEVTNR 256
Score = 54.4 bits (130), Expect = 3e-08
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
Query: 19 NAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW 78
+ A +A + E +L + ++A +G +E A ++ +
Sbjct: 174 SLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233
Query: 79 PKGYSRKGSALSYLGRYKESISTYEEGLK-LDPNNEQMKE 117
P+ +LG+ E + Y LK ++ +KE
Sbjct: 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273
Score = 38.2 bits (88), Expect = 0.005
Identities = 12/101 (11%), Positives = 30/101 (29%), Gaps = 7/101 (6%)
Query: 14 LKDKGNAALQANNFIEAIEAYSE--AIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKT 71
++ + + + +D TN ++ + + N + AL +
Sbjct: 68 VRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQG 127
Query: 72 ISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
SL+ + L L R + ++ D +
Sbjct: 128 DSLEC-----MAMTVQILLKLDRLDLARKELKKMQDQDEDA 163
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 58.4 bits (142), Expect = 5e-10
Identities = 14/105 (13%), Positives = 41/105 (39%), Gaps = 16/105 (15%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF------DPTDITFQ-NNIAAVYFERKEYDQCIEQYI 305
+G N++ A + + E DP + +A V + ++Y
Sbjct: 72 VGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYE 131
Query: 306 Q------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
+ + +++ IA A + +G+ ++ ++ A+ ++ ++
Sbjct: 132 KSLVYAQQADDQVA---IACAFRGLGDLAQQEKNLLEAQQHWLRA 173
Score = 54.6 bits (132), Expect = 1e-08
Identities = 31/225 (13%), Positives = 62/225 (27%), Gaps = 66/225 (29%)
Query: 265 EALAHYNKAVEF-----DPTDI-TFQNNIAAVYFERKEYDQCIEQYIQ------KIENRA 312
EA + + P + + VY +D+ + K +
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
+AL ++G + +W A+ F + E+ + E+ A
Sbjct: 64 A---EHRALHQVGMVERMAGNWDAARRCFLEER-------------ELLASLPEDPLAA- 106
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEA--INRNPDDPKYYSNRAACYTKLAAFDL 430
+ A E G A A +EY ++ + DD A + L
Sbjct: 107 -----SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV---AIACAFRGL----- 153
Query: 431 GLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475
G + Q + +A + +A ++
Sbjct: 154 ----------------------GDLAQQEKNLLEAQQHWLRARDI 176
Score = 53.4 bits (129), Expect = 2e-08
Identities = 15/104 (14%), Positives = 28/104 (26%), Gaps = 14/104 (13%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVYFERKEYDQCIEQY-- 304
LG F+EA A + + D T + + V +D +
Sbjct: 32 LGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLE 91
Query: 305 ----IQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
+ + + + D A+ +EKS
Sbjct: 92 ERELLASLPEDP--LAASANAYEVATVALHFGDLAGARQEYEKS 133
Score = 37.3 bits (87), Expect = 0.006
Identities = 13/104 (12%), Positives = 27/104 (25%), Gaps = 13/104 (12%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLD---GTNH----ILFSNRSAAFAKEGNYEKALEDAEK 70
G A N+ A + E +L + + G+ A ++ EK
Sbjct: 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132
Query: 71 --TISLKPDWPKG----YSRKGSALSYLGRYKESISTYEEGLKL 108
+ + D + G E+ + +
Sbjct: 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176
Score = 34.9 bits (81), Expect = 0.041
Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 13/104 (12%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTN------HILFSNRSAAFAKEGNYEKALEDAEKT 71
G + F EA ++ + + H GN++ A +
Sbjct: 33 GYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEE 92
Query: 72 IS----LKPDWPKG---YSRKGSALSYLGRYKESISTYEEGLKL 108
L D + + G + YE+ L
Sbjct: 93 RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136
Score = 34.6 bits (80), Expect = 0.049
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVYFERKEY 297
LG+ A ++KN EA H+ +A + D + + + +
Sbjct: 153 LGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203
Score = 34.6 bits (80), Expect = 0.053
Identities = 23/188 (12%), Positives = 48/188 (25%), Gaps = 56/188 (29%)
Query: 291 YFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT 350
FE +Y Q + + A + A +G Y M+ + A+ F+
Sbjct: 2 AFEAHDYALAERQAQALLAHPAT---ASGARFMLGYVYAFMDRFDEARASFQALQ----- 53
Query: 351 PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGN--ELFKN-GKYADAVKEYTEAINR 407
+ +K + E + + + G + A + + E
Sbjct: 54 --------QQAQKSGD----------HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL 95
Query: 408 NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAID 467
P+ +A ++ + + A
Sbjct: 96 LASLPEDPLAASANAYEV---------------------------ATVALHFGDLAGARQ 128
Query: 468 AYEKALEL 475
YEK+L
Sbjct: 129 EYEKSLVY 136
Score = 31.1 bits (71), Expect = 0.64
Identities = 7/56 (12%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 53 AAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKL 108
AAF + A+ ++ G +++ R+ E+ ++++ +
Sbjct: 1 AAFEAHDYALAERQ-AQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ 55
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha,
GFT-structural genomics, PSI-2, protein structure
initiative; NMR {Bacteroides fragilis}
Length = 99
Score = 53.5 bits (129), Expect = 3e-09
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNH-ILFSNRSAAFAKEGNYEKALEDAEKTISL 74
+ + A++A E ++ + + A+ K G+++KAL + + I L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 75 KPDWPKGYSRK 85
PD P +RK
Sbjct: 65 NPDSPALQARK 75
Score = 52.4 bits (126), Expect = 7e-09
Identities = 18/84 (21%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 50 NRSAAFAKEGNYEKALEDAEKTISLKP-DWPKGYSRKGSALSYLGRYKESISTYEEGLKL 108
+G+ E AL+ E+ + +P + Y G+A LG ++++++ Y+ ++L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 109 DPNNE-----QMKEAIKDVRNQEM 127
+P++ +M I + N++M
Sbjct: 65 NPDSPALQARKMVMDILNFYNKDM 88
Score = 45.4 bits (108), Expect = 2e-06
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 9/92 (9%)
Query: 383 ERGNELFKNGKYADAVKEYTEAINRNPDDP-KYYSNRAACYTKLAAFDLGLKDCETCLKL 441
+ EL G +A++ E + P + Y Y KL + L + ++ ++L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 442 DPKFLKGWIRKGKILQGMQQQSKAIDAYEKAL 473
+P LQ + ++ Y K +
Sbjct: 65 NPDS--------PALQARKMVMDILNFYNKDM 88
Score = 45.0 bits (107), Expect = 3e-06
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTD-ITFQNNIAAVYFERKEYDQCIEQYIQKIEN 310
+ E + + E AL + ++ +P + Y + ++ + + Y IE
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 311 RADFKLIA--KALQRIGNCYKK 330
D + K + I N Y K
Sbjct: 65 NPDSPALQARKMVMDILNFYNK 86
Score = 38.1 bits (89), Expect = 9e-04
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 373 IDPVKAEEA-KERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNR 418
+PV +EA GN K G + A+ Y AI NPD P + +
Sbjct: 29 TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARK 75
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 55.5 bits (133), Expect = 2e-08
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 3/96 (3%)
Query: 21 ALQANNFIEAIEAYSEAIKLDGTNH--ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW 78
L + L N+ I++ ++ + +G +++ + I L+ W
Sbjct: 251 PLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW 310
Query: 79 PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
Y G G +E+ Y L P
Sbjct: 311 -LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345
Score = 51.3 bits (122), Expect = 5e-07
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
Query: 395 ADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGK 454
+ + + + Y +A D + T + L+ +L ++ GK
Sbjct: 260 LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGK 318
Query: 455 ILQGMQQQSKAIDAYEKALELDASNA 480
+ + +A DAY A L
Sbjct: 319 VYEMKGMNREAADAYLTAFNLRPGAN 344
Score = 46.2 bits (109), Expect = 2e-05
Identities = 20/165 (12%), Positives = 32/165 (19%), Gaps = 34/165 (20%)
Query: 261 KNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQC-------IEQYIQKIENRAD 313
K+ A + V+ P + A V R + I I +
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272
Query: 314 FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYI 373
++ Q + + E Y+
Sbjct: 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGID------------------LEMSWLNYV 314
Query: 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNR 418
G G +A Y A N P Y
Sbjct: 315 L---------LGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIE 350
Score = 45.5 bits (107), Expect = 3e-05
Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 10/99 (10%)
Query: 23 QANNFIEAIEAYSEAIKLDGTNHILFSNRSAAF--------AKEGNYEKALEDAEKTISL 74
+ A E E ++ + ++ E + + ++L
Sbjct: 211 DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270
Query: 75 K--PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN 111
+ Y K + G+ ES G+ L+ +
Sbjct: 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS 309
Score = 44.7 bits (105), Expect = 6e-05
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
K +AL E+ +A + I L+ + + + + +G +A + +L+P
Sbjct: 283 KAVSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341
Query: 77 D-----WPKG---YSRKGSALSYLGRYKES 98
W + + + YL ++ S
Sbjct: 342 GANTLYWIENGIFQTSVPYVVPYLDKFLAS 371
Score = 38.5 bits (89), Expect = 0.005
Identities = 7/57 (12%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309
A K +E+ N ++ + + + + + VY + + + Y+
Sbjct: 283 KAVSALVKGKTDESYQAINTGIDLEMSWLNY-VLLGKVYEMKGMNREAADAYLTAFN 338
Score = 32.0 bits (72), Expect = 0.50
Identities = 10/45 (22%), Positives = 12/45 (26%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEY 297
LG K EA Y A P T ++ Y
Sbjct: 316 LGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPY 360
Score = 30.1 bits (67), Expect = 2.2
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK 75
G EA +AY A L + L+ + F + + + +K ++ +
Sbjct: 317 GKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF--QTSVPYVVPYLDKFLASE 372
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 1e-07
Identities = 57/302 (18%), Positives = 92/302 (30%), Gaps = 85/302 (28%)
Query: 250 EKELGNEAYK-----KKNFEEALAHYNKAVEFDPTDITFQNNIA-AVYFERKEYDQCI-E 302
E+ +G + YK + + A H+ F DI N + ++F E + I E
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHF-GGEKGKRIRE 1686
Query: 303 QYIQ-KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSE-HRT----PEIRTL 356
Y E D KL + + K + + F T P +
Sbjct: 1687 NYSAMIFETIVDGKLKTEKI-------FKEINEHSTSYTFRSEKGLLSATQFTQPALTL- 1738
Query: 357 ISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYA------------DAVK----- 399
MEK E+ K + P A A G+ L G+YA V+
Sbjct: 1739 ---MEKAAFEDLKSKGLIPADATFA---GHSL---GEYAALASLADVMSIESLVEVVFYR 1789
Query: 400 --EYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWI-----RK 452
A+ P D SN + A + G + L+ + R
Sbjct: 1790 GMTMQVAV---PRDELGRSNYG-----MIAINPG----RVAASFSQEALQYVVERVGKRT 1837
Query: 453 GKILQ-------GMQQ-----QSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEEV 500
G +++ QQ +A+D L N ++ + S + EEV
Sbjct: 1838 GWLVEIVNYNVEN-QQYVAAGDLRALDTVTNVL-----NFIKLQKIDIIELQKSLSLEEV 1891
Query: 501 RK 502
Sbjct: 1892 EG 1893
Score = 38.5 bits (89), Expect = 0.007
Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 26/132 (19%)
Query: 457 QGMQQQSKAIDAYEK---ALEL----DASNAEAVEGYRQCSIA--VSSNPEEVRKRAMGD 507
QG Q+Q +D Y+ A ++ D + G+ SI V +NP + G
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDT-YGF---SILDIVINNPVNLTIH-FGG 1678
Query: 508 PEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIASKIQKLV---NSGLIVL-AF---- 559
+ ++I R+ +I E + D + ++ + EI GL+ F
Sbjct: 1679 EKGKRI-RENYSAMIFETI-VDGKLKTEKI-FKEINEHSTSYTFRSEKGLLSATQFTQPA 1735
Query: 560 IFL-SISVYVKM 570
+ L + + +
Sbjct: 1736 LTLMEKAAFEDL 1747
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 52.3 bits (125), Expect = 1e-07
Identities = 27/251 (10%), Positives = 68/251 (27%), Gaps = 44/251 (17%)
Query: 251 KELGNEAYKKKNFEEALAHYNKAVEF------DPTDITFQNNIAAVYFERKEYDQCIEQY 304
+ +K A + KA ++ + + ++
Sbjct: 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100
Query: 305 IQKIE---NRADFKLIAKALQRIGNCY-KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360
I+ +R F+ A +G + D+ A +E + + + L ++
Sbjct: 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC 160
Query: 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDP-------K 413
K + +G+Y +A Y++ I + +
Sbjct: 161 FIKC--------------------ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200
Query: 414 YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK--GKILQGMQQQ-----SKAI 466
Y+ + C + + DP F ++ + + S+
Sbjct: 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHC 260
Query: 467 DAYEKALELDA 477
++ + LD
Sbjct: 261 KEFDNFMRLDK 271
Score = 43.8 bits (103), Expect = 8e-05
Identities = 14/120 (11%), Positives = 31/120 (25%), Gaps = 10/120 (8%)
Query: 238 KNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ------NNIAAVY 291
K +E + E N A+ A++ F+ + +
Sbjct: 68 KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEIL 127
Query: 292 -FERKEYDQCIEQYIQ---KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSE 347
+ +Y + I+ Y L K + + + A + K +
Sbjct: 128 ENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187
Score = 31.1 bits (70), Expect = 0.84
Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 19/136 (13%)
Query: 2 ENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKE--- 58
+ + + + N + A+++ AI++ R A K
Sbjct: 68 KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG---QFRRGANFKFELG 124
Query: 59 -------GNYEKALEDAEKTISL------KPDWPKGYSRKGSALSYLGRYKESISTYEEG 105
+Y KA++ E K + + + G+Y E+ Y +
Sbjct: 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL 184
Query: 106 LKLDPNNEQMKEAIKD 121
+K N + ++KD
Sbjct: 185 IKSSMGNRLSQWSLKD 200
Score = 28.4 bits (63), Expect = 5.9
Identities = 17/123 (13%), Positives = 33/123 (26%), Gaps = 15/123 (12%)
Query: 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFS------NRSAAFAKEGNYEKAL 65
L A +++ +A F GN A+
Sbjct: 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97
Query: 66 EDAEKTISLKPDWPKGYSRKGSALSYLGR--------YKESISTYEEGLKLDPNNEQMKE 117
+ E I + + R + LG Y ++I YE + ++ +
Sbjct: 98 DSLENAIQIFTH-RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156
Query: 118 AIK 120
+ K
Sbjct: 157 SNK 159
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 52.1 bits (124), Expect = 2e-07
Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 4/125 (3%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQY---IQKI 308
E G FE+ L + + D+ + N A + Y++ + Q I+
Sbjct: 167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226
Query: 309 ENRADFKLIAKALQRIGNCYKKME-DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEE 367
LI + + G C +K+E + + ++K+ E+ + KI
Sbjct: 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRL 286
Query: 368 EKKAY 372
E +
Sbjct: 287 EHHHH 291
Score = 43.6 bits (102), Expect = 1e-04
Identities = 24/188 (12%), Positives = 63/188 (33%), Gaps = 21/188 (11%)
Query: 236 EDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD------ITFQNNIAA 289
+++ + Q+ + + + KK ++E + K + T + +N IA
Sbjct: 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163
Query: 290 VYFERKEYDQCIEQYIQKIEN----RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345
+Y E + I+ + Q ++ + + K ++ + K++
Sbjct: 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223
Query: 346 -------SEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAV 398
S ++ E +K++ EE + KA ++ + Y +A+
Sbjct: 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF----DILEMHAYKEAL 279
Query: 399 KEYTEAIN 406
+
Sbjct: 280 VNKISRLE 287
Score = 35.1 bits (80), Expect = 0.048
Identities = 27/162 (16%), Positives = 55/162 (33%), Gaps = 28/162 (17%)
Query: 283 FQNNIAAVYFERKEYDQCI---EQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKV 339
+Q +AA ++ +Y+ CI ++ + + D I N Y + K
Sbjct: 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGID 176
Query: 340 YFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVK 399
FE+ + ++E EE + L+ + +Y +++
Sbjct: 177 LFEQI------------LKQLEALHDNEEFDVKV-------RYNHAKALYLDSRYEESLY 217
Query: 400 EYTEAI------NRNPDDPKYYSNRAACYTKLAAFDLGLKDC 435
+ +AI N + Y R C KL + ++D
Sbjct: 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA 259
Score = 32.4 bits (73), Expect = 0.32
Identities = 14/109 (12%), Positives = 35/109 (32%), Gaps = 13/109 (11%)
Query: 22 LQANNFIEAIEAYSEAIKLDGTNH------ILFSNRSAAFAKEGNYEKALEDAEKTISLK 75
L+ ++ I + + T + + + +A+ G +K ++ E+ +
Sbjct: 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL 185
Query: 76 PDWPKGYSRK-------GSALSYLGRYKESISTYEEGLKLDPNNEQMKE 117
AL RY+ES+ + +++ M
Sbjct: 186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 46.7 bits (110), Expect = 2e-06
Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 21/126 (16%)
Query: 394 YADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAF----------DLGLKDCETCLKLDP 443
+ ++ NP D + +L+ F + E L +DP
Sbjct: 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77
Query: 444 KFLKGWIRKGKILQGM-----------QQQSKAIDAYEKALELDASNAEAVEGYRQCSIA 492
K + G A +++A++ N ++ + A
Sbjct: 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA 137
Query: 493 VSSNPE 498
+ E
Sbjct: 138 PQLHAE 143
Score = 38.2 bits (88), Expect = 0.002
Identities = 10/126 (7%), Positives = 38/126 (30%), Gaps = 21/126 (16%)
Query: 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNY----------EKAL 65
D + F + + K + + + + + ++A+
Sbjct: 7 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 66
Query: 66 EDAEKTISLKPDWPKGYSRKGSALSYLGR-----------YKESISTYEEGLKLDPNNEQ 114
E+ + + P + G+A + + + +++ + P+N
Sbjct: 67 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126
Query: 115 MKEAIK 120
++++
Sbjct: 127 YLKSLE 132
Score = 34.4 bits (78), Expect = 0.039
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 17/108 (15%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE----------RKEYDQCI 301
+ E + FE+ + +P D V E ++ + I
Sbjct: 7 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 66
Query: 302 EQYIQKIENRADFKLIAKALQRIGNCYKKM----EDWKNAKVYFEKSM 345
++ + + +A+ IGN Y D AK F+ +
Sbjct: 67 TKFEEALLIDPKK---DEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT 111
Score = 27.4 bits (60), Expect = 8.3
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 260 KKNFEEALAHYNKAVEFDPTDITFQNNI 287
K NF+ A + +AV+ P + + ++
Sbjct: 104 KHNFDLATQFFQQAVDEQPDNTHYLKSL 131
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 47.7 bits (113), Expect = 5e-06
Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 3/127 (2%)
Query: 386 NELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF 445
G+ A++ EAI +P D S+ F+ + +KL P++
Sbjct: 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64
Query: 446 LKGWIRKGKILQGMQQQSKAIDAYEKAL---ELDASNAEAVEGYRQCSIAVSSNPEEVRK 502
L G + +++ Q + A E + V E+
Sbjct: 65 LPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELAL 124
Query: 503 RAMGDPE 509
+ +
Sbjct: 125 QIEELRQ 131
Score = 33.8 bits (77), Expect = 0.13
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 19 NAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW 78
AL +A+E EAIK + L S+ +G++E+A E ++I L P++
Sbjct: 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64
Query: 79 PKGYS 83
G S
Sbjct: 65 LPGAS 69
Score = 33.0 bits (75), Expect = 0.23
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 2/98 (2%)
Query: 57 KEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMK 116
EG ++ALE + I P S L G ++ + + +KL P
Sbjct: 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68
Query: 117 EAIKDVRNQEM--NDMNRGDPFANLFSDPNIFVQLQLD 152
++ + D +G A + + + +
Sbjct: 69 SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVS 106
Score = 29.5 bits (66), Expect = 2.4
Identities = 12/73 (16%), Positives = 33/73 (45%)
Query: 255 NEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF 314
A + ++AL +A++ P D + +++ + ++++ EQ +Q I+ ++
Sbjct: 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64
Query: 315 KLIAKALQRIGNC 327
A L+ +
Sbjct: 65 LPGASQLRHLVKA 77
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 43.9 bits (104), Expect = 1e-05
Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 5/101 (4%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNN----IAAVYFERKEYDQCIE 302
A+ + +A K +++A + +E P + N + Y+ + +
Sbjct: 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNG-VYTPNALYWLGESYYATRNFQLAEA 60
Query: 303 QYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEK 343
Q+ + A L ++G A+ ++
Sbjct: 61 QFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQ 101
Score = 29.7 bits (67), Expect = 1.1
Identities = 17/120 (14%), Positives = 45/120 (37%), Gaps = 8/120 (6%)
Query: 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSN----RSAAFAKEGNYEKALEDAEKT 71
+ AL+ + +A + + ++ N + N ++ N++ A
Sbjct: 7 NVAFDALKNGKYDDASQLFLSFLE-LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDL 65
Query: 72 ISLKPDWPK---GYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMN 128
+S P K G + G + G+ E+ T ++ P ++ + A + +++ +
Sbjct: 66 VSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125
Score = 28.9 bits (65), Expect = 2.1
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDP 412
A A + KNGKY DA + + + P+
Sbjct: 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGV 36
Score = 27.7 bits (62), Expect = 5.2
Identities = 11/61 (18%), Positives = 25/61 (40%)
Query: 288 AAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSE 347
A + +YD + ++ +E + AL +G Y +++ A+ F +S
Sbjct: 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR 68
Query: 348 H 348
+
Sbjct: 69 Y 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 44.5 bits (106), Expect = 5e-05
Identities = 14/105 (13%), Positives = 34/105 (32%), Gaps = 12/105 (11%)
Query: 253 LGNEAYKKKNFEEALAHYNKAV---------EFDPTDITFQNNIAAVYFERKEYDQCIEQ 303
L + K+ F++A Y + + D + + + +
Sbjct: 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260
Query: 304 YIQKIENRA---DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345
+A D + L+ +G Y++ ++ A+ E +M
Sbjct: 261 GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305
Score = 44.5 bits (106), Expect = 5e-05
Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 15/111 (13%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-------DPTDI-TFQNNIAAVYFERKEYDQCIEQY 304
L K+ ++EA +A+E D D+ NN+A + + +Y++ Y
Sbjct: 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176
Query: 305 IQKIENRADFKL------IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHR 349
+ +E KL +AK + +CY K +K A+ +++ ++
Sbjct: 177 QRALEIYQT-KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226
Score = 41.8 bits (99), Expect = 4e-04
Identities = 37/260 (14%), Positives = 77/260 (29%), Gaps = 64/260 (24%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF--------DPTDITFQNNIAAVYFERKEYDQCIEQY 304
L + +++A N A+ P NN+A +Y +R +Y +
Sbjct: 75 LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 134
Query: 305 IQKIENR-----ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISE 359
+ +E R D +AK L + + ++ + Y+++++ E
Sbjct: 135 KRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL-------------E 181
Query: 360 MEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR---------NPD 410
+ + + DP A+ + K GK+ A Y E + R + +
Sbjct: 182 IYQTKLGPD-----DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236
Query: 411 DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK---------------GKI 455
+ + + G E GW + G +
Sbjct: 237 NKPIWMHAEEREECKGKQKDGTSFGE---------YGGWYKACKVDSPTVTTTLKNLGAL 287
Query: 456 LQGMQQQSKAIDAYEKALEL 475
+ + A E A+
Sbjct: 288 YRRQGKFEAAETLEEAAMRS 307
Score = 36.4 bits (85), Expect = 0.018
Identities = 33/211 (15%), Positives = 62/211 (29%), Gaps = 39/211 (18%)
Query: 285 NNIAAVYFERKEYDQCIEQYIQKIENR-----ADFKLIAKALQRIGNCYKKMEDWKNAKV 339
+N+ Y + Y+ + Q +E+ D +A L + Y+ +K+A
Sbjct: 31 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAAN 90
Query: 340 YFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVK 399
++ + +K ++ P A K GKY +A
Sbjct: 91 LLNDAL-------------AIREKTLGKD-----HPAVAATLNNLAVLYGKRGKYKEAEP 132
Query: 400 EYTEA--INRN---PDDP---KYYSNRAACYTKLAAFDLGLKDCETCLKL--------DP 443
A I D P K +N A ++ + L++ DP
Sbjct: 133 LCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP 192
Query: 444 KFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474
K + +A Y++ L
Sbjct: 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILT 223
Score = 34.8 bits (81), Expect = 0.055
Identities = 11/95 (11%), Positives = 27/95 (28%), Gaps = 15/95 (15%)
Query: 29 EAIEAYSEAIKLD-----GTNH----ILFSNRSAAFAKEGNYEKALEDAEKTISLK---- 75
+A Y E + G+ ++ + +G + E K
Sbjct: 213 QAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272
Query: 76 --PDWPKGYSRKGSALSYLGRYKESISTYEEGLKL 108
P G+ G+++ + + E ++
Sbjct: 273 DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307
Score = 33.3 bits (77), Expect = 0.17
Identities = 12/96 (12%), Positives = 32/96 (33%), Gaps = 16/96 (16%)
Query: 29 EAIEAYSEAIKLD----GTNH--ILFS--NRSAAFAKEGNYEKALEDAEKTISLK----- 75
A+ +A++ G +H + + + + Y+ A ++++
Sbjct: 45 VAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104
Query: 76 ---PDWPKGYSRKGSALSYLGRYKESISTYEEGLKL 108
P + G+YKE+ + L++
Sbjct: 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140
Score = 32.9 bits (76), Expect = 0.21
Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 20/109 (18%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLD----GTNH----ILFSNRSAAFAKEGNYEKA----- 64
N + +A ++A+ + G +H +N + + K G Y++A
Sbjct: 76 ALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK 135
Query: 65 --LEDAEKTISLKPDWP---KGYSRKGSALSYLGRYKESISTYEEGLKL 108
LE EK L D P K + G+Y+E Y+ L++
Sbjct: 136 RALEIREKV--LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182
Score = 32.9 bits (76), Expect = 0.27
Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 29 EAIEAYSEAIKLD----GTNH--ILFS--NRSAAFAKEGNYEKALEDAEKTISLK----- 75
EA A+++ G +H + N + +G YE+ ++ + +
Sbjct: 129 EAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188
Query: 76 ---PDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107
P+ K + S G++K++ + Y+E L
Sbjct: 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223
Score = 31.7 bits (73), Expect = 0.49
Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 12/82 (14%)
Query: 39 KLDGTNH----ILFSNRSAAFAKEGNYEKALEDAEKTISLK--------PDWPKGYSRKG 86
+ G N +A +G YE A+ ++ + PD +
Sbjct: 17 QGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILA 76
Query: 87 SALSYLGRYKESISTYEEGLKL 108
+YK++ + + L +
Sbjct: 77 LVYRDQNKYKDAANLLNDALAI 98
Score = 31.0 bits (71), Expect = 0.97
Identities = 28/184 (15%), Positives = 50/184 (27%), Gaps = 52/184 (28%)
Query: 317 IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV 376
+ L + Y ++ A ++++ E +K + P
Sbjct: 26 RLRTLHNLVIQYASQGRYEVAVPLCKQAL-------------EDLEKTSGHD-----HPD 67
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEA--INRN---PDDPKY---YSNRAACYTKLAAF 428
A KY DA +A I D P +N A Y K +
Sbjct: 68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY 127
Query: 429 DLGLKDCETCLKLDPKFLKGWIRK-----------------GKILQGMQQQSKAIDAYEK 471
C+ L+ IR+ + Q + + Y++
Sbjct: 128 KEAEPLCKRALE---------IREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178
Query: 472 ALEL 475
ALE+
Sbjct: 179 ALEI 182
Score = 30.2 bits (69), Expect = 1.6
Identities = 6/54 (11%), Positives = 17/54 (31%), Gaps = 7/54 (12%)
Query: 61 YEKALEDAEKTISLK------PDWPKGYSRKGSALSYLGRYKESISTYEEGLKL 108
+ E + + P + + GRY+ ++ ++ L+
Sbjct: 4 HHHHSSGREN-LYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALED 56
Score = 29.4 bits (67), Expect = 2.6
Identities = 7/68 (10%), Positives = 19/68 (27%), Gaps = 8/68 (11%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFD------PTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
K ++ + + PT T N+ A+Y + +++
Sbjct: 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303
Query: 307 --KIENRA 312
+ +
Sbjct: 304 AMRSRKQG 311
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 41.9 bits (98), Expect = 1e-04
Identities = 19/125 (15%), Positives = 39/125 (31%)
Query: 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLK 433
+ E+ ++ +EL + G++A A+ + +A C + F+L +
Sbjct: 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE 61
Query: 434 DCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAV 493
T + L +S + E+ L + N E V
Sbjct: 62 LLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQV 121
Query: 494 SSNPE 498
+ E
Sbjct: 122 GRDEE 126
Score = 35.3 bits (81), Expect = 0.026
Identities = 28/224 (12%), Positives = 62/224 (27%), Gaps = 65/224 (29%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
+ +E ++ +AL + + + A E K+++
Sbjct: 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFEL------------ 58
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
A+ E++ ++LI
Sbjct: 59 -------------------------AQELLATIPLEYQDNSYKSLI-------------- 79
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
EL + + +K + + NPD+ + A Y ++ +
Sbjct: 80 ------------AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEA 127
Query: 432 LKDCETCLKLDPKFLKGWIRKG--KILQGMQQQSKAIDAYEKAL 473
L+ LK++ G ++K IL + Q + Y + L
Sbjct: 128 LELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171
Score = 30.7 bits (69), Expect = 0.71
Identities = 14/92 (15%), Positives = 30/92 (32%)
Query: 20 AALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWP 79
L+ F A E + N ++ L+ E+ ++ PD
Sbjct: 49 CLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNF 108
Query: 80 KGYSRKGSALSYLGRYKESISTYEEGLKLDPN 111
+ + +GR +E++ LK++
Sbjct: 109 ELACELAVQYNQVGRDEEALELLWNILKVNLG 140
Score = 28.0 bits (62), Expect = 5.4
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
L K QA ++ + + + N L + + + G E+ALE
Sbjct: 74 SYKSLIAKLELHQQAAE-SPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLW 132
Query: 70 KTISLKPDWPKGYSRKG--SALSYLGRYKESISTY 102
+ + G +K LS LG+ S Y
Sbjct: 133 NILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 42.1 bits (100), Expect = 2e-04
Identities = 9/108 (8%), Positives = 30/108 (27%), Gaps = 18/108 (16%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF---------DPTDITFQNNIAAVYFERKEYDQCIEQ 303
L + K+ +++A Y + + + + + + +
Sbjct: 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY 234
Query: 304 YIQKIENRA------DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345
+A + L+ +G Y++ + A + +
Sbjct: 235 GEYGSWYKACKVDSPT---VNTTLRSLGALYRRQGKLEAAHTLEDCAS 279
Score = 41.4 bits (98), Expect = 5e-04
Identities = 39/252 (15%), Positives = 77/252 (30%), Gaps = 48/252 (19%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF--------DPTDITFQNNIAAVYFERKEYDQCIEQY 304
+ + A+ +A+E P T N +A VY ++ +Y +
Sbjct: 7 HHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLL 66
Query: 305 IQKIENR-----ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISE 359
+ R D +A L + Y K +K A+ ++++ E
Sbjct: 67 NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-------------E 113
Query: 360 MEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN-----PDDP-- 412
+ +K+ + P A++ GK + Y A+ PDDP
Sbjct: 114 IREKVLGKF-----HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168
Query: 413 -KYYSNRAACYTKLAAFDLGLKDCETCLKL---------DPKFLKGWIRKGKILQGMQQQ 462
K +N A+CY K + + L + W+ + + ++
Sbjct: 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKR 228
Query: 463 SKAIDAYEKALE 474
+ E
Sbjct: 229 RDSAPYGEYGSW 240
Score = 41.0 bits (97), Expect = 6e-04
Identities = 29/194 (14%), Positives = 60/194 (30%), Gaps = 40/194 (20%)
Query: 253 LGNEAYKKK-NFEEALAHYNKAVEFD--------PTDITFQNNIAAVYFERKEYDQCIEQ 303
L Y K+ ++EA +A+E P NN+A + + + ++
Sbjct: 91 LAV-LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYY 149
Query: 304 YIQKIENRADFKL------IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLI 357
Y + +E A +L +AK + +CY K +++A+ +++ ++
Sbjct: 150 YRRALEIYAT-RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH-------- 200
Query: 358 SEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN---PDDPKY 414
EK+ + K D+ D P
Sbjct: 201 ---EKEFGSV------NGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251
Query: 415 ---YSNRAACYTKL 425
+ A Y +
Sbjct: 252 NTTLRSLGALYRRQ 265
Score = 34.4 bits (80), Expect = 0.081
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 20/97 (20%)
Query: 29 EAIEAYSEAIKLD----GTNH--ILFS--NRSAAFAKEGNYEKA-------LEDAEKTIS 73
EA ++A+ + G +H + + N + + K G Y++A LE EK
Sbjct: 61 EAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV-- 118
Query: 74 LKPDWP---KGYSRKGSALSYLGRYKESISTYEEGLK 107
L P K + G+ +E Y L+
Sbjct: 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155
Score = 32.9 bits (76), Expect = 0.21
Identities = 10/94 (10%), Positives = 26/94 (27%), Gaps = 15/94 (15%)
Query: 29 EAIEAYSEAI-----KLDGTNH----ILFSNRSAAFAKEGNYEKALEDAEKTISLK---- 75
+A Y E + K G+ + ++ + + + E K
Sbjct: 187 DAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246
Query: 76 --PDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107
P G+ G+ + + + + +
Sbjct: 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280
Score = 32.5 bits (75), Expect = 0.30
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 20/97 (20%)
Query: 29 EAIEAYSEAIKLD----GTNH----ILFSNRSAAFAKEGNYEKA-------LEDAEKTIS 73
A+ +A++ G +H + + + + + Y++A L EKT
Sbjct: 19 SAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKT-- 76
Query: 74 LKPDWP---KGYSRKGSALSYLGRYKESISTYEEGLK 107
L D P + G+YKE+ + L+
Sbjct: 77 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 113
Score = 32.1 bits (74), Expect = 0.38
Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 17/96 (17%)
Query: 29 EAIEAYSEAIKLD----GTNH--ILFS--NRSAAFAKEGNYEKALE------DAEKTISL 74
E Y A+++ G + + + N ++ + K+G Y+ A
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204
Query: 75 KPDWP---KGYSRKGSALSYLGRYKESISTYEEGLK 107
+ + ++S E G
Sbjct: 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSW 240
Score = 32.1 bits (74), Expect = 0.40
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 61 YEKALEDAEKTISLK-PDWPKGYSRKGSALSYLGRYKESISTYEEGLKL 108
++ALED EKT PD + +YKE+ + L +
Sbjct: 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAI 72
Score = 31.0 bits (71), Expect = 1.0
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 20/97 (20%)
Query: 29 EAIEAYSEAIKLD----GTNH----ILFSNRSAAFAKEGNYEKA-------LEDAEKTIS 73
EA A+++ G H +N + +G E+ LE
Sbjct: 103 EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR-- 160
Query: 74 LKPDWP---KGYSRKGSALSYLGRYKESISTYEEGLK 107
L PD P K + S G+Y+++ + Y+E L
Sbjct: 161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat
motif, helis-turn-helix, cell cycle division, mitosis,
TPR repeat; 2.50A {Homo sapiens}
Length = 167
Score = 39.3 bits (91), Expect = 0.001
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 12/111 (10%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
+ + K + A++ Y A++ + E
Sbjct: 69 HADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQS----QCLPSEIEV 124
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKK 363
+K + CY ++ K+A + S RTP+I L++ + KK
Sbjct: 125 KYK--------LAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLYKK 167
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 39.2 bits (90), Expect = 0.003
Identities = 17/86 (19%), Positives = 36/86 (41%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LG+ A + +A ++Y A + P++ N +A + + ++ I Y + I +
Sbjct: 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAK 338
F + LQ+ + + D K
Sbjct: 218 PFPAASTNLQKALSKALESRDEVKTK 243
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt
pseudomonas, protein binding; 2.50A {Pseudomonas
fluorescens}
Length = 452
Score = 37.0 bits (86), Expect = 0.016
Identities = 33/279 (11%), Positives = 76/279 (27%), Gaps = 50/279 (17%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
L NEA K+ + A +Y + E Q +A + ++ Q + + A
Sbjct: 9 LANEALKRGDTVTAQQNYQQLAELG--YSEAQVGLADIQVGTRDPAQ--IKQAEATYRAA 64
Query: 313 DFKLIAKALQRIGNCYKK-----MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEE 367
+A R+G + A+ +K+ + ++ + +
Sbjct: 65 A-DTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKA-FANGEGNTLIPLAMLYLQ-YPH 121
Query: 368 EKKAYIDPVKAEEAKERGNE--LFKNGKYA---DAVKEYTEAINRNPDDPKYYSNRAACY 422
+ + + G ++ + + + A
Sbjct: 122 SFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDV-------ERICKAALNT 174
Query: 423 TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
T + +L + K Q +QQ++ + E + A+
Sbjct: 175 TDICYVELAT-----------VYQKK--------QQPEQQAELLKQMEAGVSRGTVTAQR 215
Query: 483 VEG---YRQCSIAVSSNPEEV----RKRAMGDPEVQQIL 514
V+ + + + + K A G P L
Sbjct: 216 VDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSL 254
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 36.2 bits (83), Expect = 0.020
Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 11/146 (7%)
Query: 388 LFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLK 447
G YADA++ A + + +A Y + + ++ K KFL
Sbjct: 112 EAAQGNYADAMEALEAAPVAGSEHLVAW-MKAVVYGAAERWTDVIDQVKSAGKWPDKFLA 170
Query: 448 --GWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEE-----V 500
+ G + ++A +A + A A A ++A S E +
Sbjct: 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVAL 230
Query: 501 RKRAMG---DPEVQQILRDPAMRLIL 523
+ +P+V L+DP+ RL
Sbjct: 231 LEWLQTTHPEPKVAAALKDPSYRLKT 256
Score = 35.1 bits (80), Expect = 0.051
Identities = 11/101 (10%), Positives = 30/101 (29%), Gaps = 3/101 (2%)
Query: 20 AALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWP 79
N+ +A+EA A + + + ++ + + ++ + +
Sbjct: 111 CEAAQGNYADAMEALEAAPVAGSEHLVAW-MKAVVYGAAERWTDVIDQVKSAGKWPDKFL 169
Query: 80 KGYSR--KGSALSYLGRYKESISTYEEGLKLDPNNEQMKEA 118
G + G A + L + E+ E +
Sbjct: 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAI 210
Score = 33.9 bits (77), Expect = 0.11
Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 6/110 (5%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLD--GTNHILFSNRSAAFAKEGNYEKA---LEDAEKT 71
K A + + I+ A K A A + +A L +A +
Sbjct: 141 KAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS 200
Query: 72 ISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKD 121
+ + A G +++ E P ++ A+KD
Sbjct: 201 PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP-EPKVAAALKD 249
>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
TRI/dimethyllysine demethylase, oxidoredu structural
protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
PDB: 3avs_A*
Length = 531
Score = 36.0 bits (82), Expect = 0.031
Identities = 40/256 (15%), Positives = 68/256 (26%), Gaps = 26/256 (10%)
Query: 172 QKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKK 231
Q S + + ++ VL G ++ + PP P +P PP K
Sbjct: 5 QDPNSQIIPSMSVSIYPSSAEVLKACRNLGKNGLSNSSILLDKCPPPRPPSSPYPPLPKD 64
Query: 232 PAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVY 291
P ++ E + L N + A++ D + +
Sbjct: 65 KLNPPTPSIYLENKRDAFFPPLHQFCTNPNNPVTVIRGLAGALKLDLGLFSTKT------ 118
Query: 292 FERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKV--YFEKSMSEHR 349
+ +E Q + AD ++I +C AK Y S E
Sbjct: 119 LVEANNEHMVEVRTQ-LLQPADENWDPTGTKKIWHCESNRSHTTIAKYAQYQASSFQESL 177
Query: 350 TPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP 409
E + E N + +K T N +
Sbjct: 178 REENEKRSHHKDHSDSESTSS--------------DNSGRRRKGPFKTIKFGT---NIDL 220
Query: 410 DDPKYYSNRAACYTKL 425
D K + + TKL
Sbjct: 221 SDDKKWKLQLHELTKL 236
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat,
cysteine rich protein, loop-helix-TU repeat protein,
hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Length = 273
Score = 34.5 bits (80), Expect = 0.078
Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 15/101 (14%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE----RKEYDQCIEQYIQK 307
LG ++YK+K+F +A ++ KA + + + N+ +Y++ K + Y
Sbjct: 11 GLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASFY--- 65
Query: 308 IENRADFKLIAKALQRIGNCYKKME----DWKNAKVYFEKS 344
+A + +GN Y + + A Y+ K+
Sbjct: 66 --AKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKA 104
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET:
GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Length = 447
Score = 33.1 bits (74), Expect = 0.23
Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 294 RKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEI 353
+ Y +K+E A + + +++ + + F
Sbjct: 357 LAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLK--EESVKLFRGVKKMGGEEFS 414
Query: 354 RTLISEMEKKIKEEEKK 370
R + ++E +I E +
Sbjct: 415 RRYLQQLESEIDELYIQ 431
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 0.32
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 226 PPPAKKPAEPEDKNLTD-EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVE 275
P +K E + K L + + S E+E +A KK+ EE ++ VE
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQEWREKA--KKDLEEWNQRQSEQVE 132
Score = 29.0 bits (64), Expect = 2.9
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 16/82 (19%)
Query: 330 KMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELF 389
+ W+ E + ++ L + + +E +KA D EE +R +E
Sbjct: 86 SIRKWR-----------EEQRKRLQELDAASKVMEQEWREKAKKD---LEEWNQRQSEQV 131
Query: 390 KNGKYADAVKEYTEAINRNPDD 411
+ K + + + +A + PD
Sbjct: 132 EKNKINNRIAD--KAFYQQPDA 151
>1tzp_A Penicillin-insensitive murein endopeptidase; LAS enzyme,
metallopeptidase, peptidoglycan hydrolase; 1.40A
{Escherichia coli} SCOP: d.65.1.3 PDB: 1u10_A
Length = 255
Score = 32.3 bits (73), Expect = 0.35
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 204 GDGDAEEMD--VDPQPPSPKKAPSPPPAKKPAE 234
GDG E+ +P P K P P
Sbjct: 213 GDGCGAELQSWFEPPKPGTTKPEKKTPPPLPPS 245
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of
chromatin subfamily...; structural DNA-binding protein
BRAF35, DNA-bending; NMR {Mus musculus}
Length = 92
Score = 30.4 bits (69), Expect = 0.35
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 352 EIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404
EI ++ K++ EK+ Y+D +AE+ K++ + + ++A K TE+
Sbjct: 37 EITKMLGAEWSKLQPAEKQRYLD--EAEKEKQQYLKELWAYQQSEAYKVCTES 87
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial
transcription, activator, DNA- binding, mitochondrion,
phosphoprotein; 1.35A {Homo sapiens}
Length = 67
Score = 29.6 bits (67), Expect = 0.36
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
Query: 340 YFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVK 399
F+++ + E + E K + + EK+ YI A+E + R Y + +K
Sbjct: 17 RFQEAKGDS-PQEKLKTVKENWKNLSDSEKELYIQ--HAKEDETR---------YHNEMK 64
Query: 400 EY 401
+
Sbjct: 65 SW 66
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT
DNA, protein-drug-DNA compl regulation-DNA complex; HET:
DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB:
1j3x_A
Length = 71
Score = 29.7 bits (67), Expect = 0.38
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 11/50 (22%)
Query: 352 EIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEY 401
E SE K + +EK + D A+ K R Y +K Y
Sbjct: 33 EFSKKCSERWKTMSAKEKGKFED--MAKADKAR---------YEREMKTY 71
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus
norvegicus} SCOP: a.21.1.1
Length = 83
Score = 30.0 bits (68), Expect = 0.43
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 11/51 (21%)
Query: 352 EIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402
E SE K + +EK + D A+ K R Y +K Y
Sbjct: 39 EFSKKCSERWKTMSAKEKGKFED--MAKADKAR---------YEREMKTYI 78
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group
protein 2A, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 86
Score = 29.6 bits (67), Expect = 0.59
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 11/50 (22%)
Query: 352 EIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEY 401
E SE K + +EK + + A+ K R Y +K+Y
Sbjct: 47 EFSKKCSERWKTMSGKEKSKFDE--MAKADKVR---------YDREMKDY 85
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 31.9 bits (72), Expect = 0.68
Identities = 33/202 (16%), Positives = 66/202 (32%), Gaps = 39/202 (19%)
Query: 251 KELGNEAYKKKNFEEALAHYNK------AVEFDPTDI-------TFQNNI---------A 288
++ N A + FEEA A + K AV+ I F A
Sbjct: 1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLA 1112
Query: 289 AVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEH 348
++ + I+ YI+ + + +++ A +W+ Y + + +
Sbjct: 1113 KAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTS--------GNWEELVKYLQMARKKA 1164
Query: 349 RTPEIRT-LISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR 407
R + T LI + K + E + +I+ ++ G+ + Y A Y N
Sbjct: 1165 RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN- 1223
Query: 408 NPDDPKYYSNRAACYTKLAAFD 429
+ A+ L +
Sbjct: 1224 -------FGRLASTLVHLGEYQ 1238
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 29.7 bits (67), Expect = 0.70
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 11/62 (17%)
Query: 352 EIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD 411
+ I E+ K + EEEK Y + KA + ER Y +K E ++
Sbjct: 37 DATLQIEELWKTLSEEEKLKYEE--KATKDLER---------YNSQMKRAIEQESQMSLK 85
Query: 412 PK 413
Sbjct: 86 DS 87
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 308
Score = 31.0 bits (70), Expect = 0.92
Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 6/125 (4%)
Query: 172 QKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPA-- 229
L + T L + ++ T + D + ++ PP + PP A
Sbjct: 35 SSSKPLFLSLSSTRSFPTHLYCIKKDDIDITFFEQDNPDEEITFDPPEKPEGYIPPRAVD 94
Query: 230 -KKPAEPEDKNLTDEQRSAKK---EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQN 285
E+ L E+ E LGN+ Y + + + + + F+
Sbjct: 95 EPPFESEEEIALAYEELYGAAYSGESLLGNDVYAMDSKIKKATGFGSKSKKEKIRDGFEE 154
Query: 286 NIAAV 290
N+ V
Sbjct: 155 NVVQV 159
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 31.0 bits (70), Expect = 1.0
Identities = 28/209 (13%), Positives = 60/209 (28%), Gaps = 37/209 (17%)
Query: 205 DGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFE 264
G + + P+ S + + ED++ D + + + ++ F
Sbjct: 54 TGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFA 113
Query: 265 EALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324
E A Y ++ I A + I + + + F+L+ K +
Sbjct: 114 ELRAQYVV----------TRDTIKAKGRSHATAQEEILKLSEVFK---QFRLVPKQFDYL 160
Query: 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKER 384
N + M D + E+ I + + P K
Sbjct: 161 VNSMRVMMDR----------------------VRTQERLIMKLCVEQCKMPKKNFITLFT 198
Query: 385 GNELFKN--GKYADAVKEYTEAINRNPDD 411
GNE K ++E ++ ++
Sbjct: 199 GNETSDTWFNAAIAMNKPWSEKLHDVSEE 227
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box
domain, structural genomics, NPPSFA; NMR {Mus musculus}
Length = 102
Score = 29.3 bits (66), Expect = 1.1
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 351 PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404
E+ +++ M + EE+K+ Y K E AK+ + + + K YT++
Sbjct: 46 GEVSKIVASMWDGLGEEQKQVYKK--KTEAAKKEYLKQLAAYRASLVSKSYTDS 97
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
{Encephalitozoon cuniculi} PDB: 2uy1_B
Length = 493
Score = 31.0 bits (69), Expect = 1.2
Identities = 14/116 (12%), Positives = 28/116 (24%), Gaps = 4/116 (3%)
Query: 259 KKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIA 318
E+A + +E + V E Y +Y A+
Sbjct: 225 GIGQKEKAKKVVERGIEMSDG-MFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSK 283
Query: 319 KALQRI---GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
+ N K + + F + +E P + + +E
Sbjct: 284 ELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATP 339
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus
norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A
1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Length = 77
Score = 28.4 bits (64), Expect = 1.2
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 11/50 (22%)
Query: 352 EIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEY 401
++ + EM ++K+ Y KA + KE+ Y + Y
Sbjct: 36 DVAKKLGEMWNNTAADDKQPYEK--KAAKLKEK---------YEKDIAAY 74
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX,
amphoterin, DNA/structural protein complex; NMR {Homo
sapiens} SCOP: a.21.1.1 a.21.1.1
Length = 159
Score = 29.8 bits (67), Expect = 1.4
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 10/95 (10%)
Query: 293 ERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEH---R 349
+ + + Y + A +R + + + Y K EH
Sbjct: 61 LQAMHREKYPNYKYRKGETKKKFKDPNAPKRPPSAFFL---F--CSEYRPKIKGEHPGLS 115
Query: 350 TPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKER 384
++ + EM ++K+ Y KA + KE+
Sbjct: 116 IGDVAKKLGEMWNNTAADDKQPYEK--KAAKLKEK 148
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
signaling protein, directed evoluti SEC14, phospholipid
transporter, lipid; HET: PEE; 1.80A {Saccharomyces
cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Length = 320
Score = 30.6 bits (69), Expect = 1.4
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 5/80 (6%)
Query: 203 MGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKE--KELGNEAYKK 260
MG S + NLT EQ A + L + YK+
Sbjct: 1 MGHHHHHHHH---MTTSILDTYPQICSPNALPGTPGNLTKEQEEALLQFRSILLEKNYKE 57
Query: 261 KNFEEALAHYNKAVEFDPTD 280
+ + L + +A +FD
Sbjct: 58 RLDDSTLLRFLRARKFDINA 77
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown
function, SEL1-like repeats; 1.68A {Escherichia coli}
Length = 490
Score = 30.7 bits (70), Expect = 1.6
Identities = 18/136 (13%), Positives = 49/136 (36%), Gaps = 17/136 (12%)
Query: 260 KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE----RKEYDQCIEQYIQKIENRADFK 315
++ ++A+ + KA + Q N+ + +K+ Q + E
Sbjct: 344 EEEHKKAVEWFRKAAAKG--EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---- 397
Query: 316 LIAKALQRIGNCYKKME----DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
++ A ++G Y D+ A +F+ + + + EKK+ ++ +
Sbjct: 398 -LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQ 456
Query: 372 YIDPVKAEEAKERGNE 387
+ +++ E+
Sbjct: 457 --AELLSQQYIEKYAP 470
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding,
helix-turn-helix motif, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 173
Score = 29.6 bits (66), Expect = 1.9
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 11/52 (21%)
Query: 352 EIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTE 403
++ + EM ++K+ Y KA + KE+ Y + Y
Sbjct: 131 DVAKKLGEMWNNTAADDKQPYEK--KAAKLKEK---------YEKDIAAYRA 171
>3mem_A Putative signal transduction protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-2; HET: MSE; 2.25A {Marinobacter
aquaeolei}
Length = 457
Score = 30.3 bits (68), Expect = 1.9
Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 13/80 (16%)
Query: 106 LKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQ---LDPRTKPFLSDP 162
+ +Q+ AIK + L P ++ ++P +
Sbjct: 153 DNHAADRDQLHSAIKRFTGLRIQQRLEDTL--ELPPLPETAQRIIHLRVNP-------NA 203
Query: 163 SYVQMIKEIQKDPSLMTTKL 182
++ ++ DPSL ++
Sbjct: 204 VMGDLVDVVESDPSL-AAQV 222
Score = 28.0 bits (62), Expect = 8.8
Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 14/91 (15%)
Query: 476 DASNAEAVEGYRQCSIAVSSNPEEVRK--RAMGDPEVQQILRD-------PAMRLILEQM 526
A +++ +++ + +QQ L D P + +
Sbjct: 138 RHDFAVDTANISVNLDNHAADRDQLHSAIKRFTGLRIQQRLEDTLELPPLPETAQRIIHL 197
Query: 527 QNDPRALSDHL-----KNPEIASKIQKLVNS 552
+ +P A+ L +P +A+++ +S
Sbjct: 198 RVNPNAVMGDLVDVVESDPSLAAQVVSWASS 228
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA
recognition, chromatin, DNA binding protein; NMR
{Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A
1lwm_A
Length = 93
Score = 28.1 bits (63), Expect = 2.2
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Query: 352 EIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTE 403
++ + E K + EEK+ Y KA+ K+R Y + Y
Sbjct: 50 QVGKKLGEKWKALTPEEKQPYEA--KAQADKKR---------YESEKELYNA 90
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex,
nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis,
ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Length = 83
Score = 27.7 bits (61), Expect = 2.6
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQ 303
+ A+K +A K+ N EEA+ +Y KA+E ++ + + Y+Q I +
Sbjct: 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGST----AAIYEQMINE 71
Query: 304 YIQKIE 309
Y ++IE
Sbjct: 72 YKRRIE 77
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 29.1 bits (64), Expect = 2.7
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 200 SSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPED-KNLTDEQRSAKKEKELGNEAY 258
S MG ++ + P+ A + EPE + +EQR +E + ++
Sbjct: 64 SEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVM 123
Query: 259 KKKNFEEA 266
+++ E+A
Sbjct: 124 EQEWREKA 131
>2crg_A Metastasis associated protein MTA3; transcription factor, helix
turn helix, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: a.4.1.3
Length = 70
Score = 27.2 bits (60), Expect = 2.8
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 10/45 (22%)
Query: 260 KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQY 304
FEEAL Y K +F N+I + K IE Y
Sbjct: 16 ACLFEEALEKYGK--DF--------NDIRQDFLPWKSLTSIIEYY 50
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation,
transcription-DNA CO; HET: DNA; 2.40A {Mus musculus}
Length = 79
Score = 27.5 bits (62), Expect = 2.9
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 349 RTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394
EI + + K +K+ +K +I +AE + + + + KY
Sbjct: 29 HNAEISKRLGKRWKLLKDSDKIPFIQ--EAERLRLKHMADYPDYKY 72
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 29.4 bits (65), Expect = 2.9
Identities = 6/43 (13%), Positives = 15/43 (34%)
Query: 214 DPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNE 256
P P K+P +P+ ++++ + + G
Sbjct: 61 QNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKR 103
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase,
phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Length = 1354
Score = 29.8 bits (66), Expect = 3.2
Identities = 41/291 (14%), Positives = 83/291 (28%), Gaps = 41/291 (14%)
Query: 217 PPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEF 276
P+ KK+ + + + +A K + A +
Sbjct: 1023 NPAEKKSHTNGSSNGSSAAGSTATAAAVTTANGAKPKAPATPQAATSVTNPAAGDGISVQ 1082
Query: 277 DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKN 336
+ + + A+ + D E + DF+ + K E
Sbjct: 1083 NDPPVDSSGSPASPKKGKANADDYAESF-------RDFQC---------SQIVKCELEMA 1126
Query: 337 AKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY-- 394
K+Y + P+ + + I+ + K+ + K E ++
Sbjct: 1127 EKIYNDV---VAAHPKHLQANLLLIQNIESNQLKSQLPLTFVNAQKTSPPEAGESADKQK 1183
Query: 395 --ADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452
V+ E I + D ++ A L ++ GLK+ D +
Sbjct: 1184 EDQKKVRSALERIVKLADKVIQETDSEA----LLSY-YGLKN-------DTR-----ADA 1226
Query: 453 GKILQGMQQQSKA-IDAYEKALELDASNAEAVEGYRQCSIAVSSNPEEVRK 502
KI M +Q I+A K A A + + ++ E+ K
Sbjct: 1227 AKIKTNMDKQKNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIK 1277
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Length = 308
Score = 29.2 bits (65), Expect = 3.3
Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 2/123 (1%)
Query: 382 KERGNELFKNGKYADAVKEYTEAI-NRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440
E+G+ +A Y AI + Y A ++ L
Sbjct: 68 AEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127
Query: 441 LDPK-FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEE 499
++ +I+ K + + ++KA E + S +
Sbjct: 128 IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 187
Query: 500 VRK 502
K
Sbjct: 188 AFK 190
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure
genomics, SANT domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 63
Score = 27.1 bits (60), Expect = 3.3
Identities = 11/45 (24%), Positives = 13/45 (28%), Gaps = 10/45 (22%)
Query: 260 KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQY 304
K F + L Y K F I KE + I Y
Sbjct: 17 VKRFVKGLRQYGK--NF--------FRIRKELLPNKETGELITFY 51
>2lhj_A High mobility group protein homolog NHP1; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; NMR {Babesia bovis}
Length = 97
Score = 27.7 bits (62), Expect = 3.7
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 11/50 (22%)
Query: 352 EIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEY 401
I +I + +EEKK Y ++E + R Y EY
Sbjct: 54 AIGKMIGAAWNALSDEEKKPYER--MSDEDRVR---------YEREKAEY 92
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum,
metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB:
1tjc_A
Length = 104
Score = 27.7 bits (61), Expect = 3.7
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 238 KNLTDEQRSAKKEKE----LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE 293
+ L + + S + L Y++ + ++AL K +E DP N+ YFE
Sbjct: 33 RQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK--YFE 90
Query: 294 R 294
Sbjct: 91 Y 91
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA
complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1
PDB: 1hrz_A*
Length = 76
Score = 27.1 bits (61), Expect = 4.0
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 349 RTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394
R EI + K + E EK + +A++ + E + N KY
Sbjct: 31 RNSEISKQLGYQWKMLTEAEKWPFFQ--EAQKLQAMHREKYPNYKY 74
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 28.9 bits (64), Expect = 4.2
Identities = 12/54 (22%), Positives = 17/54 (31%)
Query: 199 MSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKE 252
+S TM E QPP P + EP + ++ K K
Sbjct: 35 ISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKP 88
>3r4z_A Glycosyl hydrolase family 32, N terminal; AGAR metabolism,
neoagarobiose, 3,6-anhydro-L-galactose, ALP
galactopyranose, bioenergy; HET: GLA; 1.55A
{Saccharophagus degradans} PDB: 3r4y_A*
Length = 374
Score = 29.0 bits (64), Expect = 4.3
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 1/77 (1%)
Query: 41 DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESIS 100
DG N + S+ A G + + + ++ Y + +YL +K
Sbjct: 294 DGINFDIMSHIKGAPEAVGFFRPESDSDDPISGIEWGLSHKYDASWNW-NYLCFFKTRRQ 352
Query: 101 TYEEGLKLDPNNEQMKE 117
+ G +
Sbjct: 353 VLDAGSYQQTGDSGAVH 369
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 28.8 bits (64), Expect = 4.5
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 216 QPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEK 251
K+A P P +P+ + KK K
Sbjct: 55 PKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSK 90
Score = 28.8 bits (64), Expect = 4.5
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 215 PQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEK 251
+ K PP KK +P+ + + K+ +
Sbjct: 60 KRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMR 96
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural
genomics, PSI, protein structure initiative; 3.20A
{Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Length = 291
Score = 28.6 bits (63), Expect = 5.2
Identities = 14/90 (15%), Positives = 30/90 (33%)
Query: 275 EFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDW 334
+FD T + + F + Q +E A +L+ + D+
Sbjct: 172 QFDLTPPEIIDRVYRQPFPNRFLASLSPFIAQHLEEPAIRQLVMNSFIAFFRRNVMQYDY 231
Query: 335 KNAKVYFEKSMSEHRTPEIRTLISEMEKKI 364
K V+F S++ ++ + +I
Sbjct: 232 KQYPVHFIGSIAYCYKEILQDAARQTGIQI 261
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase,
ATP-binding, microtubule INT and trafficking domain,
nucleotide-binding; HET: SRT; 2.40A {Sulfolobus
solfataricus} PDB: 2v6y_B*
Length = 83
Score = 26.9 bits (59), Expect = 5.4
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQ 303
+ A+K L +A K+ E+A+ +Y KA+E I A R Y+Q I +
Sbjct: 8 EDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVA----RTAYEQMINE 63
Query: 304 YIQKIE 309
Y ++I
Sbjct: 64 YKKRIS 69
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A
{Mycobacterium abscessus} PDB: 3qka_A
Length = 262
Score = 28.3 bits (64), Expect = 5.5
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 374 DPVKAEEAKERG--NELFKNGKYADAVKEYTEAINRNP 409
PV A EA + G N + G+ +A + I P
Sbjct: 170 RPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFP 207
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens}
Length = 71
Score = 26.4 bits (59), Expect = 5.5
Identities = 6/35 (17%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 350 TPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKER 384
E+ ++ + K + EK+ +++ +AE + +
Sbjct: 30 NAELSKMLGKSWKALTLAEKRPFVE--EAERLRVQ 62
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase,
transferase-transferase inhibitor; HET: SUC 3CX FPP 778;
2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A*
3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Length = 349
Score = 28.6 bits (63), Expect = 5.6
Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 10/99 (10%)
Query: 394 YADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG--LKDCETCLKLDPKFLKGWIR 451
D ++ E +N + + +R +++ D ++ L DPK W
Sbjct: 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAY 164
Query: 452 KGKILQGMQQQSKA--------IDAYEKALELDASNAEA 482
+ + +D + L +D N A
Sbjct: 165 LHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSA 203
>1h54_A Maltose phosphorylase; hydrolase, maltose metabolism; 2.15A
{Lactobacillus brevis} SCOP: a.102.1.4 b.30.5.3
Length = 754
Score = 28.9 bits (64), Expect = 5.6
Identities = 8/56 (14%), Positives = 20/56 (35%)
Query: 394 YADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGW 449
Y+ + + N + D + ++ + + G++ + L P K W
Sbjct: 651 YSRTARLDLDNYNNDTTDGLHITSMTGAWIAVVQGFAGMRVRDGQLHYAPFLPKTW 706
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus
musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Length = 80
Score = 26.8 bits (60), Expect = 5.7
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 349 RTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394
EI + K + E EK+ +ID +A+ + + + KY
Sbjct: 29 HNSEISKRLGAEWKLLSETEKRPFID--EAKRLRALHMKEHPDYKY 72
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein;
HTLV-II matrix protein, retroviral matrix protein; NMR
{Human t-lymphotropic virus 2} SCOP: a.61.1.2
Length = 137
Score = 27.5 bits (60), Expect = 5.9
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 214 DPQPPSPKKAPSPPPAKKPAEPE 236
P PP +A PPP +P +
Sbjct: 113 PPPPPPSPEAHVPPPYVEPTTTQ 135
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 28.7 bits (63), Expect = 6.0
Identities = 31/289 (10%), Positives = 78/289 (26%), Gaps = 38/289 (13%)
Query: 234 EPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDIT------FQNNI 287
E ++ + ++ N K +E + ++ P T
Sbjct: 175 EEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234
Query: 288 AAVYFERKEYDQC-----IEQYIQKIENRADFKLI---------AKALQRIGNCYKKMED 333
+ +E+ + I + + + L A+ L++ + D
Sbjct: 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGD 294
Query: 334 WKNAKVYFEKSMSEH---------RTPEIRTLISEMEKKIKEEEK--------KAYIDPV 376
NAK++ +++ + + + + ++ E+ + EK A D
Sbjct: 295 MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID 354
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA-AFDLGLKDC 435
+ + + +A Y A + + K
Sbjct: 355 PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 414
Query: 436 ETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484
E LK + + L + + + +E+ L + E
Sbjct: 415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 6.1
Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 43/140 (30%)
Query: 267 LAHYNKAVEFDPTDI----TF---QNNIAAV-----YFERKEYDQCIEQYIQKIENRADF 314
+ + +K ++ D +F Q A+ Y + +Y+ K+ R
Sbjct: 1425 VLYPSKTLKTDGVRAVSITSFGFGQKGGQAIVVHPDYLYGAITEDRYNEYVAKVSAR--- 1481
Query: 315 KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKK--IKEEEKKAY 372
K+A +F M + L E E E+ Y
Sbjct: 1482 -------------------EKSAYKFFHNGMIYN------KLFVSKEHAPYTDELEEDVY 1516
Query: 373 IDP-VKAEEAKERGNELFKN 391
+DP + + K+ G+ F +
Sbjct: 1517 LDPLARVSKDKKSGSLTFNS 1536
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like
kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB:
2ou7_A* 3fc2_A* 3thb_A*
Length = 335
Score = 28.4 bits (64), Expect = 6.2
Identities = 8/41 (19%), Positives = 10/41 (24%)
Query: 215 PQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGN 255
P P P KA P A A + +
Sbjct: 2 PAPADPGKAGVPGVAAPGAPAAAPPAKEIPEVLVDPRSRRR 42
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX
domain, structural genomics, NPPSFA, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
Length = 82
Score = 26.4 bits (59), Expect = 6.9
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 351 PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKER 384
++++ + +EK+ Y D A+E K+
Sbjct: 36 RGATKILADWWAVLDPKEKQKYTD--MAKEYKDA 67
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens}
SCOP: a.118.8.1
Length = 152
Score = 27.5 bits (61), Expect = 7.4
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 92 LGRYKESISTYEEGLKLDPNNEQ---MKEAIKDVRNQE 126
L Y++++ L+ +P N Q ++ I ++
Sbjct: 84 LKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 121
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class
I, activator, RNA polymeras holoenzyme, sigma70, open
complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia
coli k-12}
Length = 613
Score = 28.4 bits (63), Expect = 7.5
Identities = 28/207 (13%), Positives = 69/207 (33%), Gaps = 26/207 (12%)
Query: 201 STMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKK 260
S + G + + P+ S + + ED++ D + + + +
Sbjct: 159 SDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAR 218
Query: 261 KNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKA 320
+ F E A Y ++ I A + I + + + F+L+ K
Sbjct: 219 EKFAELRAQYVVT----------RDTIKAKGRSHATAQEEILKLSEVFKQ---FRLVPKQ 265
Query: 321 LQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEE 380
+ N + +V ++ ++ R I L E K K+ + ++
Sbjct: 266 FDYLVN---------SMRVMMDRVRTQER--LIMKLCVEQCKMPKKNFITLFTGNETSDT 314
Query: 381 AKERGNELFKNGKYADAVKEYTEAINR 407
+ N +++ + + +E ++R
Sbjct: 315 WFNA--AIAMNKPWSEKLHDVSEEVHR 339
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural
genomics, PSI-biology, protein structure initiative; NMR
{Thermotoga maritima}
Length = 106
Score = 26.8 bits (60), Expect = 7.9
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 169 KEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMS----------STMGDGDAEE 210
EIQK +L+DPR+ V +S S +G + +
Sbjct: 13 SEIQKLLMEALQQLRDPRLKKDFVTFSRVELSKDKRYADVYVSFLGTPEERK 64
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A
{Rhodothermus marinus}
Length = 261
Score = 27.8 bits (62), Expect = 8.7
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNP 409
+EA ER E + GKY A++ +
Sbjct: 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR 46
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.40A {Pseudomonas aeruginosa}
Length = 258
Score = 27.9 bits (63), Expect = 8.7
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 374 DPVKAEEAKERG--NELFKNGKYADAVKEYTEAINRNP 409
D A+EA E+ + G+ EY E I R
Sbjct: 174 DEFDADEALRMRLLTEVVEPGEELARALEYAERIARAA 211
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor,
SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP:
a.21.1.1 PDB: 1j47_A
Length = 85
Score = 26.4 bits (59), Expect = 8.8
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 349 RTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394
R EI + K + E EK + +A++ + E + N KY
Sbjct: 31 RNSEISKQLGYQWKMLTEAEKWPFFQ--EAQKLQAMHREKYPNYKY 74
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, otholog; 2.15A {Mycobacterium avium subsp}
Length = 274
Score = 27.9 bits (63), Expect = 9.4
Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 374 DPVKAEEAKERG--NELFKNGKYADAVKEYTEAINRNP 409
+ + A+ A E G +E+ ++ + + E + +N N
Sbjct: 180 ERMSAQRAYELGLISEIVEHDRLLERAHEIADIVNSNA 217
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding
protein; NMR {Homo sapiens} SCOP: a.21.1.1
Length = 99
Score = 26.6 bits (59), Expect = 9.5
Identities = 7/33 (21%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 352 EIRTLISEMEKKIKEEEKKAYIDPVKAEEAKER 384
++ ++S+ K++ E++K YI + K+
Sbjct: 40 DLTKILSKKYKELPEKKKMKYIQ--DFQREKQE 70
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane
protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Length = 225
Score = 27.6 bits (62), Expect = 9.5
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 18/99 (18%)
Query: 16 DKGNAALQANNFIEAIEAYSEAIKL--DGTNHILFSNRS---AAFA--KEGNYEKALEDA 68
LQ N+ +AI G +S + +A K + A
Sbjct: 9 ATAQQKLQDGNWRQAITQLEALDNRYPFGP----YSQQVQLDLIYAYYKNADLPLAQAAI 64
Query: 69 EKTISLKPDWPKG----YSRKGSALSYLGRYKESISTYE 103
++ I L P P Y R L+ + ++ +
Sbjct: 65 DRFIRLNPTHPNIDYVMYMR---GLTNMALDDSALQGFF 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural
genomics, joint center FO structural genomics, JCSG;
HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Length = 212
Score = 27.6 bits (62), Expect = 9.6
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 11/93 (11%)
Query: 260 KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE----RKEYDQCIEQYIQKIENRADFK 315
+ ++ +A KAVE + + +A V + I Q ++
Sbjct: 66 QADYPQARQLAEKAVEAG--SKSGEIVLARVLVNRQAGATDVAHAITLL-QDAARDSESD 122
Query: 316 LIAKALQRIGNCYKK----MEDWKNAKVYFEKS 344
A +G Y ED A YF+ S
Sbjct: 123 AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 9.8
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 6/24 (25%)
Query: 302 EQYIQKIENRADFKLI----AKAL 321
+Q ++K++ KL A AL
Sbjct: 19 KQALKKLQAS--LKLYADDSAPAL 40
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon
subunit, ATP synthesis, CF1, hydrogen ION transport,
hydrolase; NMR {Thermosynechococcus elongatus} PDB:
2rq7_A
Length = 138
Score = 26.9 bits (60), Expect = 9.9
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 368 EKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404
E+ ID KA+ + ++ + +A
Sbjct: 82 ERGDTIDLEKAKAEFAAAQAALAQAEQGESKQAKIQA 118
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain,
endodermal, activator, DNA- nucleus, transcription
regulation, transcrip complex; HET: DNA; 2.75A {Mus
musculus} PDB: 2yul_A
Length = 83
Score = 26.0 bits (58), Expect = 9.9
Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 351 PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394
E+ ++ + K + EK+ +++ +AE + + + N KY
Sbjct: 35 AELSKMLGKSWKALTLAEKRPFVE--EAERLRVQHMQDHPNYKY 76
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 28.0 bits (61), Expect = 10.0
Identities = 4/52 (7%), Positives = 13/52 (25%)
Query: 215 PQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEA 266
+ + E ++ + + + +E + E A
Sbjct: 32 ANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAA 83
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.130 0.363
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,897,429
Number of extensions: 567358
Number of successful extensions: 3901
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2380
Number of HSP's successfully gapped: 878
Length of query: 570
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 471
Effective length of database: 3,937,614
Effective search space: 1854616194
Effective search space used: 1854616194
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (26.8 bits)