BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3015
         (1791 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|324120564|dbj|BAJ78673.1| RNA polymerase II largest subunit [Bemisia tabaci]
          Length = 1793

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/504 (78%), Positives = 412/504 (81%), Gaps = 24/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGEDQLSKQANENATLLFQCLVRSTLCTKLV+E +RLSSEAFEWLVGEIENRFQQAQ  
Sbjct: 1017 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVSEKFRLSSEAFEWLVGEIENRFQQAQCS 1076

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1136

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1137 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIREDQEFVN 1188

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK
Sbjct: 1189 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1248

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQT
Sbjct: 1249 LVLRIRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQT 1308

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI++TE+GEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1309 DSKKRIVVTETGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFAVLGIEAV 1368

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1369 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1428

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL--ATGM 1417
            TVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK GIEIP+    GM
Sbjct: 1429 TVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKAGIEIPMNIGAGM 1488

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            M G AGMFFGS ATPS  P    W
Sbjct: 1489 MSG-AGMFFGSMATPSMSPQMTPW 1511



 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/453 (78%), Positives = 377/453 (83%), Gaps = 56/453 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           +++QMMNILM LPIWDGKMPQPCILKP+PLWTGKQVFSLIIPGNVNM RTHSTHPDDED+
Sbjct: 550 DKDQMMNILMHLPIWDGKMPQPCILKPRPLWTGKQVFSLIIPGNVNMIRTHSTHPDDEDN 609

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKVVVEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV
Sbjct: 610 GPYKWISPGDTKVVVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTV 669

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           +NNWLLLEG                                              HSIGI
Sbjct: 670 INNWLLLEG----------------------------------------------HSIGI 683

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADPQTY+EIQ AIKKAK DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 684 GDTIADPQTYVEIQRAIKKAKADVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 743

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 744 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 803

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 804 FIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 863

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMV+YD TVRNSVGQLIQLRYGEDGLCGEAVE Q+I TV LSHK FED ++FDPSNER 
Sbjct: 864 SVMVNYDGTVRNSVGQLIQLRYGEDGLCGEAVEFQKIATVDLSHKAFEDGFKFDPSNER- 922

Query: 491 TLRNVSSLRRVVNSKPL--LIGCWKLTS-VEKE 520
                  LRR+ N   L  L+G  ++ S +EKE
Sbjct: 923 ------HLRRIFNEDILKELMGSGEVISELEKE 949



 Score =  306 bits (783), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 154/188 (81%), Positives = 163/188 (86%), Gaps = 10/188 (5%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1356 ICEIFAVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1415

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK
Sbjct: 1416 QDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1475

Query: 890  DGIEIPL--ATGMMGGPAGMFFGSAATPSSMSPQMTPW-AQSTPAYNALMSP--GAAMTP 944
             GIEIP+    GMM G AGMFFGS ATP SMSPQMTPW   +TP Y ++ SP  G+ MTP
Sbjct: 1476 AGIEIPMNIGAGMMSG-AGMFFGSMATP-SMSPQMTPWNVGATPGYGSVWSPAVGSGMTP 1533

Query: 945  GGPGFSPS 952
            GGP FSPS
Sbjct: 1534 GGPNFSPS 1541



 Score =  237 bits (605), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 119/152 (78%), Positives = 121/152 (79%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1160 LRKVTANTAIYYDPDPQNTVIREDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1219

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTMEAISEKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1220 LTMEAISEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1251

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K+QDEED VDKMEDDMFLRCIE
Sbjct: 1252 RIRIMNSDDNKLQDEEDTVDKMEDDMFLRCIE 1283



 Score =  207 bits (526), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 108/170 (63%), Positives = 122/170 (71%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGEAVE Q+I TV LSHK FE
Sbjct: 852 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGEAVEFQKIATVDLSHKAFE 911

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           D ++FDPSNER LRRIFNED+L+ELMGSG+VISELEKE      W+QL R          
Sbjct: 912 DGFKFDPSNERHLRRIFNEDILKELMGSGEVISELEKE------WEQLSR---------- 955

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR+IF SGE+ VVLPCNL  +I+ +Q+
Sbjct: 956 -------------------DREALRQIFPSGETKVVLPCNLKRMIWNVQK 986



 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 776  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 835

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 836  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 877



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1371 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1431 DVLMDAASHAEVDPMRG 1447



 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 45/50 (90%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE +ILGMDP++ARPDWM+VT LPVPPLSVRPAVVMHGSARNQ+ + + L
Sbjct: 225 EECLILGMDPRYARPDWMIVTSLPVPPLSVRPAVVMHGSARNQDDLTHKL 274



 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/43 (93%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VEN+HVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFLDK
Sbjct: 509  VENLHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLDK 551


>gi|324120548|dbj|BAJ78665.1| RNA polymerase II largest subunit [Zorotypus sp. 154-1]
          Length = 1862

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/504 (76%), Positives = 410/504 (81%), Gaps = 24/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED LS QANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWLVGEIENRFQQAQ  
Sbjct: 1015 VAGEDHLSVQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLVGEIENRFQQAQCS 1074

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1134

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1135 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIGEDQEFVN 1186

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1187 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1246

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1247 LVLRIRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1306

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1307 DSKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAV 1366

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1367 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1426

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA--TGM 1417
            TVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLDAEKCK GIEIP++   G+
Sbjct: 1427 TVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCKYGIEIPMSIGPGI 1486

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            MGG AGMFFGSA+TPS  P    W
Sbjct: 1487 MGG-AGMFFGSASTPSQSPSMTPW 1509



 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/452 (77%), Positives = 373/452 (82%), Gaps = 56/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLPIW+G MPQP I+KPKPLWTGKQVFSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 KEQMMNLLMFLPIWNGVMPQPAIMKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDDG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEVCG+FYGNIQTVV
Sbjct: 609 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGQFYGNIQTVV 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 669 NNWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 683 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDP+NER  
Sbjct: 863 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFERKFKFDPTNER-- 920

Query: 492 LRNVSSLRRVVNSKPL--LIGCWKLTS-VEKE 520
                 LRR+ N   L  L+G   + S +EKE
Sbjct: 921 -----HLRRIFNEDILRDLMGSGDVISELEKE 947



 Score =  301 bits (772), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 180/319 (56%), Positives = 215/319 (67%), Gaps = 34/319 (10%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S D   + E+E VD        R    ++L ++   G  
Sbjct: 1235 LNCIFNDDNAEKLVLRIRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQG-- 1292

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVV----LPCNLMEVIFILQRW-----KLWGN 767
            I  + K +  L +     R + + +GE   +    L  +   ++ +L        + + N
Sbjct: 1293 IEAIGKVYMHLPQTDSKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSN 1352

Query: 768  ENLRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 824
            +    +C+I  VL   +VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 1353 D----ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 1408

Query: 825  HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
            HGINRQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLD
Sbjct: 1409 HGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLD 1468

Query: 885  AEKCKDGIEIPLA--TGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAA 941
            AEKCK GIEIP++   G+MGG AGMFFGSA+TP S SP MTPW Q +TPAY++  SPG  
Sbjct: 1469 AEKCKYGIEIPMSIGPGIMGG-AGMFFGSASTP-SQSPSMTPWGQGATPAYSSSYSPGNL 1526

Query: 942  M----TPGGPGFSPSVAGE 956
            M    TPGGP FSPS A +
Sbjct: 1527 MGSGATPGGPSFSPSGASD 1545



 Score =  230 bits (587), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 115/152 (75%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQNTVIGEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1218 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1249

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K Q+EE+ VDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNSDDNKFQEEEETVDKMEDDMFLRCIE 1281



 Score =  210 bits (534), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 105/166 (63%), Positives = 118/166 (71%), Gaps = 35/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIFNED+LR+LMGSGDVISELEKE                      
Sbjct: 910 RKFKFDPTNERHLRRIFNEDILRDLMGSGDVISELEKE---------------------- 947

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIF 757
                        WE+LC+DREALR+IF SGES VVLPCNL  +I+
Sbjct: 948 -------------WEQLCKDREALRQIFPSGESKVVLPCNLQRMIW 980



 Score =  170 bits (431), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 875



 Score =  162 bits (411), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1369 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1429 DVLMDAASHAEVDPMRG 1445



 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE   LGMDPKFARPDWM+VTVLPVPPLSVRPAVVM+GSARNQ+ + + L
Sbjct: 223 EECCALGMDPKFARPDWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKL 272



 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VEN+HVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 507  VENLHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 549


>gi|324120540|dbj|BAJ78661.1| RNA polymerase II largest subunit [Teleogryllus emma]
          Length = 1909

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/504 (76%), Positives = 409/504 (81%), Gaps = 24/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D LSKQAN+NATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 1018 VAGDDHLSKQANKNATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVS 1077

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1078 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1137

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1138 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVN 1189

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1190 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1249

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1250 LVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1309

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1310 DSKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAV 1369

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1370 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1429

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA--TGM 1417
            TVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLDAEKCK GIEIP++   GM
Sbjct: 1430 TVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCKAGIEIPMSVGAGM 1489

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            +GG  GMFFGSAATPS  P    W
Sbjct: 1490 IGG-VGMFFGSAATPSMSPQMTPW 1512



 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/458 (76%), Positives = 376/458 (82%), Gaps = 56/458 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 552 KEQMMNLLMFLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDDG 611

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEVCG+FYGNIQTVV
Sbjct: 612 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGQFYGNIQTVV 671

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 672 NNWLLLEG----------------------------------------------HSIGIG 685

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 686 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 745

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 746 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 805

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 806 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 865

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDP+NER  
Sbjct: 866 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKFDPTNER-- 923

Query: 492 LRNVSSLRRVVNS---KPLLIGCWKLTSVEKEMNTVLQ 526
                 LRR+ N    K L+     ++ +EKE   +++
Sbjct: 924 -----HLRRIFNEDIMKELMGSGDVISELEKEWEQLVK 956



 Score =  301 bits (770), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 180/320 (56%), Positives = 214/320 (66%), Gaps = 35/320 (10%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S D   + E+E VD        R    ++L ++   G  
Sbjct: 1238 LNCIFNDDNAEKLVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQG-- 1295

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVV----LPCNLMEVIFILQRW-----KLWGN 767
            I  + K +  L +     R + + +GE   +    L  +   ++ +L        + + N
Sbjct: 1296 IEAIGKVYMHLPQTDSKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSN 1355

Query: 768  ENLRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 824
            +    +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 1356 D----ICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 1411

Query: 825  HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
            HGINRQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLD
Sbjct: 1412 HGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLD 1471

Query: 885  AEKCKDGIEIPLA--TGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNALMSP--- 938
            AEKCK GIEIP++   GM+GG  GMFFGSAATP SMSPQMTPW QS TP Y++  S    
Sbjct: 1472 AEKCKAGIEIPMSVGAGMIGG-VGMFFGSAATP-SMSPQMTPWNQSATPGYSSSWSSPGN 1529

Query: 939  --GAAMTPGGPGFSPSVAGE 956
              G+ MTPGGP FSPS A +
Sbjct: 1530 VYGSGMTPGGPSFSPSGASD 1549



 Score =  233 bits (593), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1161 LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1220

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1221 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1252

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K QDEE+ VDKMEDDMFLRCIE
Sbjct: 1253 RIRIMNSDDNKFQDEEETVDKMEDDMFLRCIE 1284



 Score =  207 bits (527), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 104/170 (61%), Positives = 120/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 853 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFE 912

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIFNED+++ELMGSGDVISELEKE                      
Sbjct: 913 KKFKFDPTNERHLRRIFNEDIMKELMGSGDVISELEKE---------------------- 950

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE+L +DREALR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 951 -------------WEQLVKDREALRQIFPSGESKVVLPCNLQRMIWNVQK 987



 Score =  171 bits (432), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 777  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 836

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 837  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 878



 Score =  160 bits (406), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1372 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1431

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1432 DVLMDAASHAEVDPMRG 1448



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 43/46 (93%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
           EE  ILGMDPKFARPDWM+VTVLPVPPLSVRPAVVM+GSARNQ+ +
Sbjct: 226 EECFILGMDPKFARPDWMIVTVLPVPPLSVRPAVVMYGSARNQDDI 271



 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VEN+HVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 510  VENLHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 552


>gi|324120572|dbj|BAJ78677.1| RNA polymerase II largest subunit [Vespa analis insularis]
          Length = 1708

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/504 (76%), Positives = 410/504 (81%), Gaps = 23/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D+LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 1015 VAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVS 1074

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1134

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1135 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVN 1186

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPT+ISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1187 VYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1246

Query: 1180 LVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
            LVLRIRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ
Sbjct: 1247 LVLRIRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1306

Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
            TDSKKRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA
Sbjct: 1307 TDSKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1366

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
            VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE
Sbjct: 1367 VRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1426

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM- 1417
            ETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+A G  
Sbjct: 1427 ETVDVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAG 1486

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            + G AGMFFGS ATPS  P    W
Sbjct: 1487 VMGTAGMFFGSVATPSMSPQMTPW 1510



 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/432 (79%), Positives = 363/432 (84%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 669 NNWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 683 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDP+NER  
Sbjct: 863 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKFDPTNER-- 920

Query: 492 LRNVSSLRRVVN 503
                 LRR+ N
Sbjct: 921 -----YLRRIFN 927



 Score =  301 bits (770), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 152/191 (79%), Positives = 163/191 (85%), Gaps = 8/191 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1355 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1414

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK
Sbjct: 1415 QDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCK 1474

Query: 890  DGIEIPLATGM-MGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNA-LMSP--GAAMTPG 945
             GIEIP+A G  + G AGMFFGS ATP SMSPQMTPW  +TP Y A  MSP  G+ MTPG
Sbjct: 1475 AGIEIPMAVGAGVMGTAGMFFGSVATP-SMSPQMTPWMGATPGYGASSMSPALGSGMTPG 1533

Query: 946  GPGFSPSVAGE 956
            G  FSPS A +
Sbjct: 1534 GACFSPSGASD 1544



 Score =  226 bits (576), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 115/153 (75%), Positives = 119/153 (77%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPT+ISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1218 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1249

Query: 1649 RIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K QD EE+ VDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNSDDNKFQDTEEETVDKMEDDMFLRCIE 1282



 Score =  198 bits (503), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/170 (60%), Positives = 118/170 (69%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIFNED++RE+MGSG+VISELE+E      W+QL R          
Sbjct: 910 KKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELERE------WEQLNR---------- 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DR  LREIF SGES VVLPCNL  +I+ +Q+
Sbjct: 954 -------------------DRAVLREIFPSGESKVVLPCNLQRMIWNVQK 984



 Score =  170 bits (430), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 875



 Score =  159 bits (402), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1370 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1429

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL+DAA+HAE DPMRG
Sbjct: 1430 DVLLDAASHAEVDPMRG 1446



 Score = 90.9 bits (224), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 53/64 (82%), Gaps = 1/64 (1%)

Query: 17  TSVYAWYVVPY-PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
           T+  AW ++ +   EES ILGMDPKFARPDWM+VTVLPVPPLSVRPAV+M+GSA+NQ+ +
Sbjct: 209 TAERAWEILKHITDEESFILGMDPKFARPDWMVVTVLPVPPLSVRPAVIMYGSAKNQDDL 268

Query: 76  MNIL 79
            + L
Sbjct: 269 THKL 272



 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 507  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 549


>gi|383857287|ref|XP_003704136.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Megachile rotundata]
          Length = 1904

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/504 (76%), Positives = 410/504 (81%), Gaps = 23/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D+LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 1015 VAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVS 1074

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1134

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1135 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVN 1186

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPT+ISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1187 VYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1246

Query: 1180 LVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
            LVLRIRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ
Sbjct: 1247 LVLRIRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1306

Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
            TDSKKRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA
Sbjct: 1307 TDSKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1366

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
            VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE
Sbjct: 1367 VRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1426

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM- 1417
            ETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+A G  
Sbjct: 1427 ETVDVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAG 1486

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            + G AGMFFGS ATPS  P    W
Sbjct: 1487 VMGTAGMFFGSVATPSMSPQMTPW 1510



 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/432 (79%), Positives = 363/432 (84%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 669 NNWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 683 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDP+NER  
Sbjct: 863 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKFDPTNER-- 920

Query: 492 LRNVSSLRRVVN 503
                 LRR+ N
Sbjct: 921 -----YLRRIFN 927



 Score =  301 bits (770), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 180/317 (56%), Positives = 213/317 (67%), Gaps = 31/317 (9%)

Query: 664  LRRIFNED-----VLR-ELMGSGD-VISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGD 716
            L  IFN+D     VLR  +M S D    + E+E VD        R    ++L ++   G 
Sbjct: 1235 LNCIFNDDNAEKLVLRIRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQG- 1293

Query: 717  VISELEKEWEKLCEDREALREIFS-SGESNVVLP-------CNLMEVIF--ILQRWKLWG 766
             I  + K +  L +     R + + +GE   +          +LM+V+    +   + + 
Sbjct: 1294 -IEAIGKVYMHLPQTDSKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFS 1352

Query: 767  NENLRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAIT 823
            N+    +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAIT
Sbjct: 1353 ND----ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAIT 1408

Query: 824  RHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 883
            RHGINRQDTGALMRCSFEETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLL
Sbjct: 1409 RHGINRQDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLL 1468

Query: 884  DAEKCKDGIEIPLATGM-MGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNA-LMSP--G 939
            DAEKCK GIEIP+A G  + G AGMFFGS ATP SMSPQMTPW  +TP Y A  MSP  G
Sbjct: 1469 DAEKCKAGIEIPMAVGAGVMGTAGMFFGSVATP-SMSPQMTPWMGATPGYGASSMSPALG 1527

Query: 940  AAMTPGGPGFSPSVAGE 956
            + MTPGG  FSPS A +
Sbjct: 1528 SGMTPGGACFSPSGASD 1544



 Score =  226 bits (576), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 115/153 (75%), Positives = 119/153 (77%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPT+ISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1218 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1249

Query: 1649 RIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K QD EE+ VDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNSDDNKFQDTEEETVDKMEDDMFLRCIE 1282



 Score =  197 bits (500), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 101/170 (59%), Positives = 118/170 (69%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIFNED++RE+MGSG+VISELE+E      W+QL +          
Sbjct: 910 KKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELERE------WEQLNK---------- 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DR  LREIF SGES VVLPCNL  +I+ +Q+
Sbjct: 954 -------------------DRAILREIFPSGESKVVLPCNLQRMIWNVQK 984



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 875



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1370 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1429

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL+DAA+HAE DPMRG
Sbjct: 1430 DVLLDAASHAEVDPMRG 1446



 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 55/67 (82%), Gaps = 1/67 (1%)

Query: 14  VSNTSVYAWYVVPY-PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQ 72
           ++ T+  AW ++ +   EES ILGMDPKFARPDWM+VTVLPVPPLSVRPAV+M+GSA+NQ
Sbjct: 206 IALTAERAWEILKHITDEESFILGMDPKFARPDWMVVTVLPVPPLSVRPAVIMYGSAKNQ 265

Query: 73  EQMMNIL 79
           + + + L
Sbjct: 266 DDLTHKL 272



 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 507  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 549


>gi|380029407|ref|XP_003698365.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Apis florea]
          Length = 1893

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/504 (76%), Positives = 409/504 (81%), Gaps = 23/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D+LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 1015 VAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVS 1074

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1134

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1135 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVN 1186

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDP +ISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1187 VYYEMPDFDPNKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1246

Query: 1180 LVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
            LVLRIRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ
Sbjct: 1247 LVLRIRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1306

Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
            TD+KKRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA
Sbjct: 1307 TDAKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1366

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
            VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE
Sbjct: 1367 VRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1426

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM- 1417
            ETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+A G  
Sbjct: 1427 ETVDVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKVGIEIPMAVGAG 1486

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            + G AGMFFGS ATPS  P    W
Sbjct: 1487 VMGTAGMFFGSVATPSMSPQMTPW 1510



 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/432 (79%), Positives = 363/432 (84%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 669 NNWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 683 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDP+NER  
Sbjct: 863 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKFDPTNER-- 920

Query: 492 LRNVSSLRRVVN 503
                 LRR+ N
Sbjct: 921 -----YLRRIFN 927



 Score =  300 bits (767), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 152/191 (79%), Positives = 163/191 (85%), Gaps = 8/191 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1355 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1414

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK
Sbjct: 1415 QDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCK 1474

Query: 890  DGIEIPLATGM-MGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNA-LMSP--GAAMTPG 945
             GIEIP+A G  + G AGMFFGS ATP SMSPQMTPW  +TP Y A  MSP  G+ MTPG
Sbjct: 1475 VGIEIPMAVGAGVMGTAGMFFGSVATP-SMSPQMTPWMGATPGYGASSMSPALGSGMTPG 1533

Query: 946  GPGFSPSVAGE 956
            G  FSPS A +
Sbjct: 1534 GACFSPSGASD 1544



 Score =  225 bits (573), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 114/153 (74%), Positives = 118/153 (77%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDP +ISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPNKISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1218 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1249

Query: 1649 RIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K QD EE+ VDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNSDDNKFQDSEEETVDKMEDDMFLRCIE 1282



 Score =  197 bits (502), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 101/170 (59%), Positives = 118/170 (69%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIFNED++RE+MGSG+VISELE+E      W+QL +          
Sbjct: 910 KKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELERE------WEQLNK---------- 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DR  LREIF SGES VVLPCNL  +I+ +Q+
Sbjct: 954 -------------------DRAVLREIFPSGESKVVLPCNLQRMIWNVQK 984



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 875



 Score =  159 bits (403), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1370 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1429

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL+DAA+HAE DPMRG
Sbjct: 1430 DVLLDAASHAEVDPMRG 1446



 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 53/64 (82%), Gaps = 1/64 (1%)

Query: 17  TSVYAWYVVPY-PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
           T+  AW ++ +   EES ILGMDPKFARPDWM+VTVLPVPPLSVRPAV+M+GSA+NQ+ +
Sbjct: 209 TAERAWEILKHITDEESFILGMDPKFARPDWMVVTVLPVPPLSVRPAVIMYGSAKNQDDL 268

Query: 76  MNIL 79
            + L
Sbjct: 269 THKL 272



 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 507  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 549


>gi|340722779|ref|XP_003399779.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
            terrestris]
 gi|350424170|ref|XP_003493710.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
            impatiens]
          Length = 1902

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/504 (75%), Positives = 409/504 (81%), Gaps = 23/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D+LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 1015 VAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVS 1074

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1134

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1135 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVN 1186

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDP +ISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1187 VYYEMPDFDPNKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1246

Query: 1180 LVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
            LVLRIRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ
Sbjct: 1247 LVLRIRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1306

Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
            TD+KKRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF+VLGIEA
Sbjct: 1307 TDAKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFEVLGIEA 1366

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
            VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE
Sbjct: 1367 VRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1426

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM- 1417
            ETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+A G  
Sbjct: 1427 ETVDVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAG 1486

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            + G AGMFFGS ATPS  P    W
Sbjct: 1487 VMGTAGMFFGSVATPSMSPQMTPW 1510



 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/432 (79%), Positives = 363/432 (84%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP W+GKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 KEQMMNILMFLPSWNGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 669 NNWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 683 DTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDP+NER  
Sbjct: 863 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKFDPTNER-- 920

Query: 492 LRNVSSLRRVVN 503
                 LRR+ N
Sbjct: 921 -----YLRRIFN 927



 Score =  300 bits (769), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 152/191 (79%), Positives = 163/191 (85%), Gaps = 8/191 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1355 ICEIFEVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1414

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK
Sbjct: 1415 QDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCK 1474

Query: 890  DGIEIPLATGM-MGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNA-LMSP--GAAMTPG 945
             GIEIP+A G  + G AGMFFGS ATP SMSPQMTPW  +TP Y A  MSP  G+ MTPG
Sbjct: 1475 AGIEIPMAVGAGVMGTAGMFFGSVATP-SMSPQMTPWMGATPGYGASSMSPALGSGMTPG 1533

Query: 946  GPGFSPSVAGE 956
            G  FSPS A +
Sbjct: 1534 GACFSPSGASD 1544



 Score =  224 bits (572), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 114/153 (74%), Positives = 118/153 (77%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDP +ISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPNKISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1218 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1249

Query: 1649 RIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K QD EE+ VDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNSDDNKFQDSEEETVDKMEDDMFLRCIE 1282



 Score =  197 bits (501), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 101/170 (59%), Positives = 118/170 (69%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIFNED++RE+MGSG+VISELE+E      W+QL +          
Sbjct: 910 KKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELERE------WEQLNK---------- 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DR  LREIF SGES VVLPCNL  +I+ +Q+
Sbjct: 954 -------------------DRAILREIFPSGESKVVLPCNLQRMIWNVQK 984



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 875



 Score =  159 bits (403), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1370 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1429

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL+DAA+HAE DPMRG
Sbjct: 1430 DVLLDAASHAEVDPMRG 1446



 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 53/64 (82%), Gaps = 1/64 (1%)

Query: 17  TSVYAWYVVPY-PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
           T+  AW ++ +   EES ILGMDPKFARPDWM+VTVLPVPPLSVRPAV+M+GSA+NQ+ +
Sbjct: 209 TAERAWEILKHITDEESFILGMDPKFARPDWMVVTVLPVPPLSVRPAVIMYGSAKNQDDL 268

Query: 76  MNIL 79
            + L
Sbjct: 269 THKL 272



 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 507  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 549


>gi|322801476|gb|EFZ22137.1| hypothetical protein SINV_09846 [Solenopsis invicta]
          Length = 1905

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/498 (76%), Positives = 408/498 (81%), Gaps = 23/498 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D+LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 1015 VAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVS 1074

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1134

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1135 --------LTGAAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVN 1186

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPT+ISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1187 VYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1246

Query: 1180 LVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
            LVLRIRIMNSDD+K QD +E+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ
Sbjct: 1247 LVLRIRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1306

Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
            TDSKKRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA
Sbjct: 1307 TDSKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1366

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
            VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE
Sbjct: 1367 VRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1426

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM- 1417
            ETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+A G  
Sbjct: 1427 ETVDVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKSGIEIPMAVGAG 1486

Query: 1418 MGGPAGMFFGSAATPSSI 1435
            M G AGMFFGS  + SS+
Sbjct: 1487 MMGTAGMFFGSVTSMSSM 1504



 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/432 (79%), Positives = 363/432 (84%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 KEQMMNLLMFLPSWDGKMPQPCILKPKPLWTGKQLFSLIIPGNVNMIRTHSTHPDEEDDG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 669 NNWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 683 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ +S+K FE K++FDP+NER  
Sbjct: 863 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKVSNKAFEKKFKFDPTNER-- 920

Query: 492 LRNVSSLRRVVN 503
                 LRR+ N
Sbjct: 921 -----YLRRIFN 927



 Score =  300 bits (768), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 150/191 (78%), Positives = 161/191 (84%), Gaps = 7/191 (3%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1355 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1414

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK
Sbjct: 1415 QDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCK 1474

Query: 890  DGIEIPLATGM-MGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNA-LMSPG--AAMTPG 945
             GIEIP+A G  M G AGMFFGS  + SSMSPQMTPW  +TP Y A  MSP   + MTPG
Sbjct: 1475 SGIEIPMAVGAGMMGTAGMFFGSVTSMSSMSPQMTPWMGATPGYGASSMSPALSSGMTPG 1534

Query: 946  GPGFSPSVAGE 956
            G  FSPS A +
Sbjct: 1535 GACFSPSGASD 1545



 Score =  226 bits (575), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 114/153 (74%), Positives = 119/153 (77%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPT+ISPWLLRIELDRKRMTDKK
Sbjct: 1158 LKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1218 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1249

Query: 1649 RIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K QD +E+ VDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNSDDNKFQDTDEETVDKMEDDMFLRCIE 1282



 Score =  198 bits (503), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 101/170 (59%), Positives = 118/170 (69%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ +S+K FE
Sbjct: 850 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKVSNKAFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIFNED++RE+MGSG+VISELE+E      W+QL R          
Sbjct: 910 KKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELERE------WEQLNR---------- 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DR  LREIF SGES VVLPCNL  +I+ +Q+
Sbjct: 954 -------------------DRTVLREIFPSGESKVVLPCNLQRMIWNVQK 984



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 875



 Score =  159 bits (403), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1370 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1429

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL+DAA+HAE DPMRG
Sbjct: 1430 DVLLDAASHAEVDPMRG 1446



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 46/50 (92%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EES ILGMDPKFARPDWM+VTVLPVPPLSVRPAV+M+GSA+NQ+ + + L
Sbjct: 223 EESFILGMDPKFARPDWMIVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKL 272



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 507  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 549


>gi|307181433|gb|EFN69028.1| DNA-directed RNA polymerase II subunit RPB1 [Camponotus floridanus]
          Length = 1906

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/490 (77%), Positives = 403/490 (82%), Gaps = 22/490 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D+LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 1016 VAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVS 1075

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1076 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1135

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1136 --------LTGAAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVN 1187

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPT+ISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1188 VYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1247

Query: 1180 LVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
            LVLRIRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ
Sbjct: 1248 LVLRIRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1307

Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
            TDSKKRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA
Sbjct: 1308 TDSKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1367

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
            VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE
Sbjct: 1368 VRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1427

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMM 1418
            ETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+A G  
Sbjct: 1428 ETVDVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKSGIEIPMAVGAG 1487

Query: 1419 GGPAGMFFGS 1428
             G AGMFFGS
Sbjct: 1488 MGTAGMFFGS 1497



 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/432 (78%), Positives = 363/432 (84%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 550 KEQMMNLLMFLPSWDGKMPQPCILKPKPLWTGKQLFSLIIPGNVNMIRTHSTHPDEEDDG 609

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGH+VCGRFYGNIQTV+
Sbjct: 610 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHDVCGRFYGNIQTVI 669

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 670 NNWLLLEG----------------------------------------------HSIGIG 683

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 684 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 743

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 744 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 803

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 804 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 863

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ +S+K FE K++FDP+NER  
Sbjct: 864 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKVSNKAFEKKFKFDPTNER-- 921

Query: 492 LRNVSSLRRVVN 503
                 LRR+ N
Sbjct: 922 -----YLRRIFN 928



 Score =  295 bits (756), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 177/317 (55%), Positives = 209/317 (65%), Gaps = 30/317 (9%)

Query: 664  LRRIFNED-----VLR-ELMGSGD-VISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGD 716
            L  IFN+D     VLR  +M S D    + E+E VD        R    ++L ++   G 
Sbjct: 1236 LNCIFNDDNAEKLVLRIRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQG- 1294

Query: 717  VISELEKEWEKLCEDREALREIFS-SGESNVVLP-------CNLMEVIF--ILQRWKLWG 766
             I  + K +  L +     R + + +GE   +          +LM+V+    +   + + 
Sbjct: 1295 -IEAIGKVYMHLPQTDSKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFS 1353

Query: 767  NENLRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAIT 823
            N+    +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAIT
Sbjct: 1354 ND----ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAIT 1409

Query: 824  RHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 883
            RHGINRQDTGALMRCSFEETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLL
Sbjct: 1410 RHGINRQDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLL 1469

Query: 884  DAEKCKDGIEIPLATGMMGGPAGMFFGSAATPS-SMSPQMTPWAQSTPAYNA-LMSPG-- 939
            DAEKCK GIEIP+A G   G AGMFFGS    S SMSPQMTPW  +TP Y A  MSP   
Sbjct: 1470 DAEKCKSGIEIPMAVGAGMGTAGMFFGSVTGISNSMSPQMTPWMGATPGYGASSMSPALS 1529

Query: 940  AAMTPGGPGFSPSVAGE 956
            + MTPGG  FSPS A +
Sbjct: 1530 SGMTPGGACFSPSGASD 1546



 Score =  227 bits (578), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 115/153 (75%), Positives = 119/153 (77%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPT+ISPWLLRIELDRKRMTDKK
Sbjct: 1159 LKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPWLLRIELDRKRMTDKK 1218

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1219 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1250

Query: 1649 RIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K QD EE+ VDKMEDDMFLRCIE
Sbjct: 1251 RIRIMNSDDNKFQDTEEETVDKMEDDMFLRCIE 1283



 Score =  196 bits (498), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 100/170 (58%), Positives = 118/170 (69%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ +S+K FE
Sbjct: 851 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKVSNKAFE 910

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIFNED++RE+MGSG+VISELE+E      W+QL +          
Sbjct: 911 KKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELERE------WEQLNK---------- 954

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DR  LREIF SGES VVLPCNL  +I+ +Q+
Sbjct: 955 -------------------DRAVLREIFPSGESKVVLPCNLQRMIWNVQK 985



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 775  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 834

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 835  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 876



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1371 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL+DAA+HAE DPMRG
Sbjct: 1431 DVLLDAASHAEVDPMRG 1447



 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 51/60 (85%), Gaps = 1/60 (1%)

Query: 21  AWYVVPY-PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           AW ++ +   EES ILGMDPKFARPDWM+VTVLPVPPLSVRPAV+M+GSA+NQ+ + + L
Sbjct: 214 AWEILKHIKDEESFILGMDPKFARPDWMIVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKL 273



 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 508  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 550


>gi|324120558|dbj|BAJ78670.1| RNA polymerase II largest subunit [Gynaikothrips ficorum]
          Length = 1687

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/502 (75%), Positives = 407/502 (81%), Gaps = 22/502 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D LSK ANENATLLFQCLVRSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1017 VAGDDHLSKMANENATLLFQCLVRSTLCTKSVSEEFRLSTEAFEWLIGEIETRFQQAQCA 1076

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1136

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI +DQEFVN
Sbjct: 1137 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIKDDQEFVN 1188

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFG+DLNCIFNDDNAEK
Sbjct: 1189 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGEDLNCIFNDDNAEK 1248

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1249 LVLRIRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1308

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV
Sbjct: 1309 DSKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1368

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1369 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1428

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG 1419
            TVDVL+DAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK GIEIP+  G +G
Sbjct: 1429 TVDVLLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKYGIEIPMNLG-VG 1487

Query: 1420 GPAGMFFGSAATPSSIPGPPAW 1441
               G+ FGSAATPS+ P    W
Sbjct: 1488 MSTGLMFGSAATPSTSPQRTPW 1509



 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/434 (79%), Positives = 365/434 (84%), Gaps = 53/434 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMM +LMFLPIWDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 551 KEQMMTLLMFLPIWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDEG 610

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+ GILCKK+LGTS+GSLLHI FLELGHEVCG+FYGNIQTVV
Sbjct: 611 PYKWISPGDTKVMVEHGELIKGILCKKTLGTSAGSLLHIIFLELGHEVCGQFYGNIQTVV 670

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 671 NNWLLLEG----------------------------------------------HSIGIG 684

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 685 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 744

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 745 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 804

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 805 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 864

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K+FE K++FDP+N+R  
Sbjct: 865 VMVNYDSTVRNSVGQLIQLRYGEDGLCGETVEFQSLSTVKLSNKQFERKFKFDPTNDR-- 922

Query: 492 LRNVSSLRRVVNSK 505
                +LRRV N +
Sbjct: 923 -----NLRRVFNEE 931



 Score =  291 bits (746), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 177/311 (56%), Positives = 210/311 (67%), Gaps = 30/311 (9%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S D   + E+E VD        R    ++L ++   G  
Sbjct: 1237 LNCIFNDDNAEKLVLRIRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQG-- 1294

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVVLP-------CNLMEVIF--ILQRWKLWGN 767
            I  + K +  L +     R + + +GE   +          +LM+V+    +   + + N
Sbjct: 1295 IEAIGKVYMHLPQTDSKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSN 1354

Query: 768  ENLRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 824
            +    +C+I  VL   +VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 1355 D----ICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 1410

Query: 825  HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
            HGINRQDTGALMRCSFEETVDVL+DAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLD
Sbjct: 1411 HGINRQDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLD 1470

Query: 885  AEKCKDGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALM-SP-GAA 941
            AEKCK GIEIP+  G +G   G+ FGSAATPS+ SPQ TPWAQ +TP Y   M SP G+ 
Sbjct: 1471 AEKCKYGIEIPMNLG-VGMSTGLMFGSAATPST-SPQRTPWAQGATPLYGQSMWSPGGSG 1528

Query: 942  MTPGGPGFSPS 952
            MTPG P FSPS
Sbjct: 1529 MTPGCPSFSPS 1539



 Score =  228 bits (581), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI +DQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1160 LRKVTANTAIYYDPDPQNTVIKDDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1219

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGF                            G+DLNCIFNDDNAEKLVL
Sbjct: 1220 LTMEQIAEKINAGF----------------------------GEDLNCIFNDDNAEKLVL 1251

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K QDEE+ VDKMEDDMFLRCIE
Sbjct: 1252 RIRIMNSDDNKFQDEEEQVDKMEDDMFLRCIE 1283



 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/170 (57%), Positives = 118/170 (69%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K+FE
Sbjct: 852 GYIQRRLIKAMESVMVNYDSTVRNSVGQLIQLRYGEDGLCGETVEFQSLSTVKLSNKQFE 911

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+N+R LRR+FNE+V++ELMGSGDV+ EL+ E      W+Q             
Sbjct: 912 RKFKFDPTNDRNLRRVFNEEVIKELMGSGDVVQELDNE------WEQ------------- 952

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                           LC DRE LR+IF SGE+ VVLPCNL  +I+ +Q+
Sbjct: 953 ----------------LCRDREILRQIFPSGENKVVLPCNLQRMIWNVQK 986



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 776  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 835

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 836  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDSTVRNSV 877



 Score =  160 bits (406), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1371 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL+DAA+HAE DPMRG
Sbjct: 1431 DVLLDAASHAEVDPMRG 1447



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/54 (77%), Positives = 46/54 (85%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K    T + + P
Sbjct: 509  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMTLLMFLP 562



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 50/64 (78%), Gaps = 1/64 (1%)

Query: 17  TSVYAWYVVPYPY-EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
           T+   W ++ +   EE  ILGMDPK+ARPDWM+VTVLPVPPL VRPAVVM+GSARNQ+ +
Sbjct: 211 TAERVWEILKHIIDEECFILGMDPKYARPDWMIVTVLPVPPLCVRPAVVMYGSARNQDDL 270

Query: 76  MNIL 79
            + L
Sbjct: 271 THKL 274


>gi|324120544|dbj|BAJ78663.1| RNA polymerase II largest subunit [Euborellia plebeja]
          Length = 1812

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/504 (75%), Positives = 407/504 (80%), Gaps = 23/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED LSKQANENATLLFQCLVRSTLCT+LV+E +RLSSEAFEWL+GEIE RF+QAQ  
Sbjct: 1016 VAGEDHLSKQANENATLLFQCLVRSTLCTRLVSEEFRLSSEAFEWLIGEIETRFRQAQCS 1075

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1076 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1135

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1136 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIHEDQEFVN 1187

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDP RISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1188 VYYEMPDFDPQRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1247

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1248 LVLRIRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1307

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1308 DSKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAV 1367

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN+VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1368 RKSVEKEMNSVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1427

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATG-MM 1418
            TVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLD+EKCK G+EIP+    MM
Sbjct: 1428 TVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDSEKCKAGMEIPMPHAHMM 1487

Query: 1419 GG-PAGMFFGSAATPSSIPGPPAW 1441
            GG   GMFFGSA TPS  P    W
Sbjct: 1488 GGLGVGMFFGSATTPSMSPNNTPW 1511



 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/432 (78%), Positives = 363/432 (84%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLPIWDGKMPQP ILKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPD+ED G
Sbjct: 550 KEQMMNLLMFLPIWDGKMPQPAILKPKPLWTGKQLFSLIIPGNVNLIRTHSTHPDEEDDG 609

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC+LELGHE+CG+FYGNIQTVV
Sbjct: 610 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICYLELGHELCGQFYGNIQTVV 669

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 670 NNWLLYEG----------------------------------------------HSIGIG 683

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 684 DTIADPQTYLEIQRAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 743

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 744 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 803

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 804 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 863

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K+RFDP+NER  
Sbjct: 864 VMVHYDSTVRNSVGQLIQLRYGEDGLCGEIVEFQNLPTIKLSNKAFEKKFRFDPTNER-- 921

Query: 492 LRNVSSLRRVVN 503
                 LRR+ N
Sbjct: 922 -----QLRRIFN 928



 Score =  290 bits (742), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 176/319 (55%), Positives = 210/319 (65%), Gaps = 33/319 (10%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S D   + E+E VD        R    ++L ++   G  
Sbjct: 1236 LNCIFNDDNAEKLVLRIRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQG-- 1293

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVV----LPCNLMEVIFILQRW-----KLWGN 767
            I  + K +  L +     R + + +GE   +    L  +   ++ +L        + + N
Sbjct: 1294 IEAIGKVYMHLPQTDSKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSN 1353

Query: 768  ENLRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 824
            +    +C+I  VL   +VRKSVEKEMN+VLQFYGLYVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 1354 D----ICEIFSVLGIEAVRKSVEKEMNSVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 1409

Query: 825  HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
            HGINRQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLD
Sbjct: 1410 HGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLD 1469

Query: 885  AEKCKDGIEIPLATG-MMGG-PAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAA 941
            +EKCK G+EIP+    MMGG   GMFFGSA TP SMSP  TPW+Q +TP Y    SPG A
Sbjct: 1470 SEKCKAGMEIPMPHAHMMGGLGVGMFFGSATTP-SMSPNNTPWSQGATPGYPHSWSPGNA 1528

Query: 942  ----MTPGGPGFSPSVAGE 956
                MTPGGP FSPS A +
Sbjct: 1529 LGTGMTPGGPSFSPSGASD 1547



 Score =  230 bits (587), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 115/152 (75%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDP RISPWLLRIELDRKRMTDKK
Sbjct: 1159 LRKVTANTAIYYDPDPQNTVIHEDQEFVNVYYEMPDFDPQRISPWLLRIELDRKRMTDKK 1218

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1219 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1250

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K+QDEE+ VDKMEDDMFLRCIE
Sbjct: 1251 RIRIMNSDDNKLQDEEETVDKMEDDMFLRCIE 1282



 Score =  208 bits (530), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 106/170 (62%), Positives = 121/170 (71%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 851 GYIQRRLIKAMESVMVHYDSTVRNSVGQLIQLRYGEDGLCGEIVEFQNLPTIKLSNKAFE 910

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDP+NERQLRRIFNEDV+RELMGSG+VISELE+E                      
Sbjct: 911 KKFRFDPTNERQLRRIFNEDVVRELMGSGEVISELERE---------------------- 948

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE+L +DREALR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 949 -------------WEQLSKDREALRQIFPSGESKVVLPCNLQRMIWNVQK 985



 Score =  170 bits (430), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 775  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 834

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 835  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDSTVRNSV 876



 Score =  160 bits (406), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN+VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1370 SVEKEMNSVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1429

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1430 DVLMDAASHAEVDPMRG 1446



 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 45/50 (90%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARPDWM++TVLPVPPL+VRPAVVM+GSARNQ+ + + L
Sbjct: 224 EECFILGMDPKFARPDWMILTVLPVPPLAVRPAVVMYGSARNQDDLTHKL 273



 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 508  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 550


>gi|324120546|dbj|BAJ78664.1| RNA polymerase II largest subunit [Forficula hiromasai]
          Length = 1744

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/504 (75%), Positives = 408/504 (80%), Gaps = 23/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED LSKQANENATLLFQCLVRSTLC++LV+E +RLSSEAFEWL+GEIE RF+QAQ  
Sbjct: 1017 VAGEDYLSKQANENATLLFQCLVRSTLCSRLVSEEFRLSSEAFEWLIGEIETRFRQAQCS 1076

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1136

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1137 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIHEDQEFVN 1188

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDP RISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1189 VYYEMPDFDPQRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1248

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1249 LVLRIRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1308

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1309 DSKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAV 1368

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1369 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1428

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATG-MM 1418
            TVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLD+EKCK G+EIP+    MM
Sbjct: 1429 TVDVLLDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDLLLDSEKCKAGMEIPMPHAHMM 1488

Query: 1419 GG-PAGMFFGSAATPSSIPGPPAW 1441
            GG  AGMFF SA TPS  P    W
Sbjct: 1489 GGLGAGMFFSSATTPSMSPNNTPW 1512



 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/432 (78%), Positives = 363/432 (84%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLPIWDGKMPQP ILKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPD+ED G
Sbjct: 551 KEQMMNLLMFLPIWDGKMPQPAILKPKPLWTGKQLFSLIIPGNVNLIRTHSTHPDEEDDG 610

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC+LELGHE+CG+FYGNIQTVV
Sbjct: 611 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICYLELGHELCGQFYGNIQTVV 670

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 671 NNWLLYEG----------------------------------------------HSIGIG 684

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 685 DTIADPQTYLEIQRAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 744

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 745 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 804

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 805 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 864

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K+RFDP+NER  
Sbjct: 865 VMVHYDSTVRNSVGQLIQLRYGEDGLCGEIVEFQNLPTIKLSNKSFEKKFRFDPTNER-- 922

Query: 492 LRNVSSLRRVVN 503
                 LRR+ N
Sbjct: 923 -----QLRRIFN 929



 Score =  293 bits (749), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 150/194 (77%), Positives = 162/194 (83%), Gaps = 11/194 (5%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1356 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1415

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLD+EKCK
Sbjct: 1416 QDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDLLLDSEKCK 1475

Query: 890  DGIEIPLATG-MMGG-PAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAA----M 942
             G+EIP+    MMGG  AGMFF SA TP SMSP  TPW+Q +TP Y    SPG A    M
Sbjct: 1476 AGMEIPMPHAHMMGGLGAGMFFSSATTP-SMSPNNTPWSQGATPGYPHSWSPGNALGTGM 1534

Query: 943  TPGGPGFSPSVAGE 956
            TPGGP FSPS A +
Sbjct: 1535 TPGGPSFSPSGASD 1548



 Score =  229 bits (585), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 115/152 (75%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDP RISPWLLRIELDRKRMTDKK
Sbjct: 1160 LRKVTANTAIYYDPDPQNTVIHEDQEFVNVYYEMPDFDPQRISPWLLRIELDRKRMTDKK 1219

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1220 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1251

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQDEE+ VDKMEDDMFLRCIE
Sbjct: 1252 RIRIMNSDENKMQDEEETVDKMEDDMFLRCIE 1283



 Score =  208 bits (530), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 106/170 (62%), Positives = 121/170 (71%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 852 GYIQRRLIKAMESVMVHYDSTVRNSVGQLIQLRYGEDGLCGEIVEFQNLPTIKLSNKSFE 911

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDP+NERQLRRIFNEDV+RELMGSG+VISELE+E                      
Sbjct: 912 KKFRFDPTNERQLRRIFNEDVVRELMGSGEVISELERE---------------------- 949

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE+L +DREALR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 950 -------------WEQLSKDREALRQIFPSGESKVVLPCNLQRMIWNVQK 986



 Score =  170 bits (430), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 776  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 835

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 836  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDSTVRNSV 877



 Score =  160 bits (405), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1371 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL+DAA+HAE DPMRG
Sbjct: 1431 DVLLDAASHAEVDPMRG 1447



 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 45/50 (90%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARPDWM++TVLPVPPL+VRPAVVM+GSARNQ+ + + L
Sbjct: 225 EECFILGMDPKFARPDWMILTVLPVPPLAVRPAVVMYGSARNQDDLTHKL 274



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 509  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 551


>gi|332023552|gb|EGI63788.1| DNA-directed RNA polymerase II subunit RPB1 [Acromyrmex echinatior]
          Length = 1906

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/498 (76%), Positives = 406/498 (81%), Gaps = 23/498 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D+LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 1016 VAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVS 1075

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1076 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1135

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1136 --------LTGAAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVN 1187

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDP +ISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1188 VYYEMPDFDPMKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1247

Query: 1180 LVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
            LVLRIRIMNSDD+K QD +E+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ
Sbjct: 1248 LVLRIRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1307

Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
            TDSKKRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA
Sbjct: 1308 TDSKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1367

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
            VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE
Sbjct: 1368 VRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1427

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM- 1417
            ETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+A G  
Sbjct: 1428 ETVDVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKSGIEIPMAVGAG 1487

Query: 1418 MGGPAGMFFGSAATPSSI 1435
            M G AGMFFGS    SS+
Sbjct: 1488 MMGTAGMFFGSVTGMSSM 1505



 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/432 (79%), Positives = 363/432 (84%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 550 KEQMMNLLMFLPSWDGKMPQPCILKPKPLWTGKQLFSLIIPGNVNMIRTHSTHPDEEDDG 609

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 610 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 669

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 670 NNWLLLEG----------------------------------------------HSIGIG 683

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 684 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 743

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 744 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 803

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 804 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 863

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ +S+K FE K++FDP+NER  
Sbjct: 864 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKVSNKAFEKKFKFDPTNER-- 921

Query: 492 LRNVSSLRRVVN 503
                 LRR+ N
Sbjct: 922 -----YLRRIFN 928



 Score =  298 bits (764), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 150/191 (78%), Positives = 160/191 (83%), Gaps = 7/191 (3%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1356 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1415

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK
Sbjct: 1416 QDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCK 1475

Query: 890  DGIEIPLATGM-MGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNAL-MSPG--AAMTPG 945
             GIEIP+A G  M G AGMFFGS    SSMSPQMTPW  +TP Y A  MSP   + MTPG
Sbjct: 1476 SGIEIPMAVGAGMMGTAGMFFGSVTGMSSMSPQMTPWMGATPGYGASNMSPALSSGMTPG 1535

Query: 946  GPGFSPSVAGE 956
            G  FSPS A +
Sbjct: 1536 GACFSPSGASD 1546



 Score =  223 bits (569), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 113/153 (73%), Positives = 118/153 (77%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDP +ISPWLLRIELDRKRMTDKK
Sbjct: 1159 LKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPMKISPWLLRIELDRKRMTDKK 1218

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1219 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1250

Query: 1649 RIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K QD +E+ VDKMEDDMFLRCIE
Sbjct: 1251 RIRIMNSDDNKFQDTDEETVDKMEDDMFLRCIE 1283



 Score =  197 bits (502), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 101/170 (59%), Positives = 118/170 (69%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ +S+K FE
Sbjct: 851 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKVSNKAFE 910

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIFNED++RE+MGSG+VISELE+E      W+QL R          
Sbjct: 911 KKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELERE------WEQLNR---------- 954

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DR  LREIF SGES VVLPCNL  +I+ +Q+
Sbjct: 955 -------------------DRAVLREIFPSGESKVVLPCNLQRMIWNVQK 985



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 775  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 834

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 835  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 876



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1371 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL+DAA+HAE DPMRG
Sbjct: 1431 DVLLDAASHAEVDPMRG 1447



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 51/60 (85%), Gaps = 1/60 (1%)

Query: 21  AWYVVPY-PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           AW ++ +   EES ILGMDPKFARPDWM+VTVLPVPPLSVRPAV+M+GSA+NQ+ + + L
Sbjct: 214 AWEILKHIKDEESFILGMDPKFARPDWMIVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKL 273



 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 508  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 550


>gi|324120562|dbj|BAJ78672.1| RNA polymerase II largest subunit [Anacanthocoris striicornis]
          Length = 1743

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/502 (75%), Positives = 401/502 (79%), Gaps = 25/502 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG D LSKQANENATLLFQCLVRSTLCTKLV+E +RLSS AFEWLVGEIE RF+QAQ  
Sbjct: 1016 VAGNDHLSKQANENATLLFQCLVRSTLCTKLVSEKFRLSSAAFEWLVGEIETRFKQAQAQ 1075

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1076 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1135

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVIPEDQEFVN
Sbjct: 1136 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVN 1187

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME ISEKINAGFGDDLNCIFNDDNAEK
Sbjct: 1188 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQISEKINAGFGDDLNCIFNDDNAEK 1247

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSDD K  +EE++VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQT
Sbjct: 1248 LVLRIRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQT 1307

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRII+TE+GEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1308 DSKKRIIMTETGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAV 1367

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN+VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1368 RKSVEKEMNSVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1427

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG 1419
            TVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK+GIEI     M G
Sbjct: 1428 TVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKEGIEI----SMTG 1483

Query: 1420 GPAGMFFGSAATPSSIPGPPAW 1441
            G  G +FG  +TP + P    W
Sbjct: 1484 GADGAYFGGGSTPQTSPSRTPW 1505



 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/418 (81%), Positives = 354/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILM LP W+G+MP P ILKPKPLWTGKQVFSLIIPG VNM RTHSTHPDDED+G
Sbjct: 550 KEQMMNILMHLPGWNGRMPIPAILKPKPLWTGKQVFSLIIPGEVNMIRTHSTHPDDEDNG 609

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VE G L+MGILCK SLGTS+GSLLHICFLELGHE CG FYGNIQTVV
Sbjct: 610 PYKWISPGDTKVMVEAGRLVMGILCKSSLGTSAGSLLHICFLELGHEQCGYFYGNIQTVV 669

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 670 NNWLLLEG----------------------------------------------HSIGIG 683

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAK+DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 684 DTIADPQTYLEIQKAIKKAKQDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 743

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 744 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 803

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 804 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 863

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMVHYD TVRNSVGQLIQLRYGEDGLCGEAVE Q+I TV LS+KKFE+ ++FD SNER
Sbjct: 864 VMVHYDGTVRNSVGQLIQLRYGEDGLCGEAVEFQKIQTVDLSNKKFENMFKFDASNER 921



 Score =  266 bits (679), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 169/320 (52%), Positives = 202/320 (63%), Gaps = 34/320 (10%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S D  S  E+E VD        R    ++L ++   G  
Sbjct: 1236 LNCIFNDDNAEKLVLRIRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQG-- 1293

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVVLP-------CNLMEVIF--ILQRWKLWGN 767
            I  + K +  L +     R I + +GE   +          +LM+V+    +   + + N
Sbjct: 1294 IEAISKVYMHLPQTDSKKRIIMTETGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSN 1353

Query: 768  ENLRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 824
            +    +C+I  VL   +VRKSVEKEMN+VLQFYGLYVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 1354 D----ICEIFSVLGIEAVRKSVEKEMNSVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 1409

Query: 825  HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
            HGINRQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLD
Sbjct: 1410 HGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLD 1469

Query: 885  AEKCKDGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAAM- 942
            AEKCK+GIEI     M GG  G +FG  +TP + SP  TPW+  +TPA  +  SPG    
Sbjct: 1470 AEKCKEGIEI----SMTGGADGAYFGGGSTPQT-SPSRTPWSSGATPASASSWSPGGGSS 1524

Query: 943  --TPGGPGFSPSVAGEDQLS 960
              +   P FSPS   E   S
Sbjct: 1525 AWSHDQPMFSPSTGSEPSFS 1544



 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1159 LRKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1218

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME ISEKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1219 LTMEQISEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1250

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD K  +EE++VDKMEDDMFLRCIE
Sbjct: 1251 RIRIMNSDDGKSGEEEESVDKMEDDMFLRCIE 1282



 Score =  197 bits (501), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 105/170 (61%), Positives = 119/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGEAVE Q+I TV LS+KKFE
Sbjct: 851 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEAVEFQKIQTVDLSNKKFE 910

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + ++FD SNER LR+IF EDVLREL+GSG+VIS LE+E      W+QL R          
Sbjct: 911 NMFKFDASNERHLRKIFTEDVLRELLGSGEVISALEQE------WEQLNR---------- 954

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR+IF SGES VVLPCNL  +I+  Q+
Sbjct: 955 -------------------DREALRQIFPSGESKVVLPCNLKRMIWNAQK 985



 Score =  171 bits (432), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 775  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 834

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 835  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 876



 Score =  160 bits (406), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN+VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1370 SVEKEMNSVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1429

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1430 DVLMDAASHAEVDPMRG 1446



 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARPDWM+VTVLPVPPL VRPAVVM+GSARNQ+ + + L
Sbjct: 224 EECFILGMDPKFARPDWMIVTVLPVPPLCVRPAVVMYGSARNQDDLTHKL 273



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 43/43 (100%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VEN+HVTPRQIITPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 508  VENLHVTPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLEK 550


>gi|345487216|ref|XP_003425653.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1 [Nasonia vitripennis]
          Length = 1907

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/507 (75%), Positives = 409/507 (80%), Gaps = 27/507 (5%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED+LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GEIE RFQQAQ  
Sbjct: 1014 VAGEDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQCS 1073

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1074 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1133

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1134 --------LTGAAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVISEDQEFVN 1185

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPT+ISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1186 VYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1245

Query: 1180 LVLRIRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHL 1236
            LVLRIRIMNS+D+K    Q+ E++VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHL
Sbjct: 1246 LVLRIRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHL 1305

Query: 1237 PQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGI 1296
            PQTD+KKRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGI
Sbjct: 1306 PQTDAKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGI 1365

Query: 1297 EAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1356
            EAVRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS
Sbjct: 1366 EAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1425

Query: 1357 FEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATG 1416
            FEETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+  G
Sbjct: 1426 FEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKQGIEIPMGVG 1485

Query: 1417 --MMGGPAGMFFGSAATPSSIPGPPAW 1441
              +MGG  GMFFG+A TPS  P    W
Sbjct: 1486 ANIMGG-TGMFFGNAVTPSMSPQMTPW 1511



 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/432 (78%), Positives = 362/432 (83%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 548 KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 607

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 608 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 667

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 668 NNWLLLEG----------------------------------------------HSIGIG 681

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY+EIQ +I+KAKEDVIEVI KAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 682 DTIADPQTYMEIQSSIRKAKEDVIEVITKAHNMELEPTPGNTLRQTFENQVNRILNDARD 741

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 742 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 801

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 802 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 861

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDPSNER  
Sbjct: 862 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKFDPSNER-- 919

Query: 492 LRNVSSLRRVVN 503
                 LRR+ N
Sbjct: 920 -----YLRRIFN 926



 Score =  296 bits (759), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 151/190 (79%), Positives = 162/190 (85%), Gaps = 12/190 (6%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1356 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1415

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK
Sbjct: 1416 QDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCK 1475

Query: 890  DGIEIPLATG--MMGGPAGMFFGSAATPSSMSPQMTPW--AQSTPAYNAL-MSP--GAAM 942
             GIEIP+  G  +MGG  GMFFG+A TP SMSPQMTPW    +TP Y A  MSP  G+ M
Sbjct: 1476 QGIEIPMGVGANIMGG-TGMFFGNAVTP-SMSPQMTPWLGVGATPGYGAAGMSPSLGSGM 1533

Query: 943  TPGGPGFSPS 952
            TPGGP FSPS
Sbjct: 1534 TPGGPCFSPS 1543



 Score =  220 bits (561), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 112/155 (72%), Positives = 119/155 (76%), Gaps = 31/155 (20%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPT+ISPWLLRIELDRKRMTDKK
Sbjct: 1157 LKKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPTKISPWLLRIELDRKRMTDKK 1216

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1217 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1248

Query: 1649 RIRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNS+D+K    Q+ E++VDKMEDDMFLRCIE
Sbjct: 1249 RIRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIE 1283



 Score =  200 bits (508), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 103/170 (60%), Positives = 119/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 849 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFE 908

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDPSNER LRRIFNED++RE+MGSG+VISELE+E      W+QL +          
Sbjct: 909 KKFKFDPSNERYLRRIFNEDIVREMMGSGEVISELERE------WEQLNK---------- 952

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DR ALREIF SGES VVLPCNL  +I+ +Q+
Sbjct: 953 -------------------DRTALREIFPSGESKVVLPCNLQRMIWNVQK 983



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 773  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 832

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 833  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 874



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1371 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL+DAA+HAE DPMRG
Sbjct: 1431 DVLLDAASHAEVDPMRG 1447



 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 55/67 (82%), Gaps = 1/67 (1%)

Query: 14  VSNTSVYAWYVVPY-PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQ 72
           ++ T+  AW ++ +   EES ILGMDPKFARPDWM+VTVLPVPPL+VRPAVVM+GSA+NQ
Sbjct: 205 IALTAERAWEILKHITDEESFILGMDPKFARPDWMIVTVLPVPPLAVRPAVVMYGSAKNQ 264

Query: 73  EQMMNIL 79
           + + + L
Sbjct: 265 DDLTHKL 271



 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 506  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 548


>gi|324120560|dbj|BAJ78671.1| RNA polymerase II largest subunit [Cryptotympana facialis]
          Length = 1803

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/522 (73%), Positives = 407/522 (77%), Gaps = 40/522 (7%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D LSKQANENATLLFQCLVRSTLCTKL++E YRLSSEAFEWL GEIENRFQQAQ  
Sbjct: 1016 VAGDDHLSKQANENATLLFQCLVRSTLCTKLISEKYRLSSEAFEWLTGEIENRFQQAQCQ 1075

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1076 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1135

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVIPEDQEFVN
Sbjct: 1136 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVN 1187

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME ISEKINAGFGDDLNCIFNDDNAEK
Sbjct: 1188 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQISEKINAGFGDDLNCIFNDDNAEK 1247

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQT
Sbjct: 1248 LVLRIRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQT 1307

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRII+TESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1308 DSKKRIIVTESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAV 1367

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1368 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1427

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL------ 1413
            TVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK GIEIP+      
Sbjct: 1428 TVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKAGIEIPMNMGMGM 1487

Query: 1414 -----------ATGMMGGPAGMFFGSAATPSSIPGPPAWYPI 1444
                       AT  M  P    +   ATP S PG  +W P+
Sbjct: 1488 MGGGGMFFGSAATPSM-SPQTTPWNQGATP-SYPGSSSWSPM 1527



 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/452 (79%), Positives = 376/452 (83%), Gaps = 56/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LM LPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNM RTHSTHPDDED+G
Sbjct: 550 KEQMMNLLMHLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDDEDNG 609

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEVCGRFYGNIQTVV
Sbjct: 610 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGRFYGNIQTVV 669

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 670 NNWLLLEG----------------------------------------------HSIGIG 683

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 684 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 743

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 744 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 803

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 804 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 863

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q+I +V LS+KKFE KY+FD SNER  
Sbjct: 864 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQKIASVELSNKKFESKYKFDASNER-- 921

Query: 492 LRNVSSLRRVVNSKPL--LIGCWKLTS-VEKE 520
                 LRR+     L  L+G  ++ S +EKE
Sbjct: 922 -----HLRRIFTEDILRELLGSGEVISELEKE 948



 Score =  273 bits (698), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 172/311 (55%), Positives = 202/311 (64%), Gaps = 29/311 (9%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +     E+E VD        R    ++L ++   G  
Sbjct: 1236 LNCIFNDDNAEKLVLRIRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQG-- 1293

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVVLP-------CNLMEVIFI--LQRWKLWGN 767
            I  + K +  L +     R I + SGE   +          +LM+V+    +   + + N
Sbjct: 1294 IEAISKVYMHLPQTDSKKRIIVTESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSN 1353

Query: 768  ENLRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 824
            +    +C+I  VL   +VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 1354 D----ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 1409

Query: 825  HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
            HGINRQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLD
Sbjct: 1410 HGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLD 1469

Query: 885  AEKCKDGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAY--NALMSPGAA 941
            AEKCK GIEIP+  GM     G  F  +A   SMSPQ TPW Q +TP+Y  ++  SP   
Sbjct: 1470 AEKCKAGIEIPMNMGMGMMGGGGMFFGSAATPSMSPQTTPWNQGATPSYPGSSSWSPMGG 1529

Query: 942  MTPGGPGFSPS 952
            MTP GP FSPS
Sbjct: 1530 MTP-GPNFSPS 1539



 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 115/152 (75%), Positives = 120/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1159 LRKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1218

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME ISEKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1219 LTMEQISEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1250

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++K+ +EE+ VDKMEDDMFLRCIE
Sbjct: 1251 RIRIMNSDENKLTEEEETVDKMEDDMFLRCIE 1282



 Score =  203 bits (516), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 107/170 (62%), Positives = 120/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q+I +V LS+KKFE
Sbjct: 851 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQKIASVELSNKKFE 910

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KY+FD SNER LRRIF ED+LREL+GSG+VISELEKE      W+QL R          
Sbjct: 911 SKYKFDASNERHLRRIFTEDILRELLGSGEVISELEKE------WEQLSR---------- 954

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 955 -------------------DREALRQIFPSGESKVVLPCNLKRMIWNVQK 985



 Score =  171 bits (433), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 775  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 834

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 835  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 876



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1370 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1429

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1430 DVLMDAASHAEVDPMRG 1446



 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/43 (93%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 508  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 550



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARPDWM+VTVLPVPPL VRPAVVM+GSARNQ+ + + L
Sbjct: 224 EECFILGMDPKFARPDWMIVTVLPVPPLPVRPAVVMYGSARNQDDLTHKL 273


>gi|324120516|dbj|BAJ78649.1| RNA polymerase II largest subunit [Thermobia domestica]
          Length = 1699

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/498 (76%), Positives = 405/498 (81%), Gaps = 25/498 (5%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D LSKQANENATLLFQCLVR+TLCTK V+++ RLS+EAFEWL+GEIE+RFQQAQ  
Sbjct: 1017 VAGDDHLSKQANENATLLFQCLVRATLCTKAVSDDSRLSAEAFEWLIGEIESRFQQAQCQ 1076

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVF 1136

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1137 --------LTGVAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVN 1188

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDP+RISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1189 VYYEMPDFDPSRISPWLLRIELDRKRMTDKKLTMEHIAEKINAGFGDDLNCIFNDDNAEK 1248

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQT
Sbjct: 1249 LVLRIRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQT 1308

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFK+IA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1309 DSKKRIVITETGEFKSIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAV 1368

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1369 RKSVEKEMNAVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1428

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL--ATGM 1417
            TVDVLMDAA+HAE DPMRGVSENIIMGQL RMGTGCFDLLLDAEKCK GIEIP+    GM
Sbjct: 1429 TVDVLMDAASHAEVDPMRGVSENIIMGQLARMGTGCFDLLLDAEKCKHGIEIPMNIGAGM 1488

Query: 1418 MGGPAGMFFGSAATPSSI 1435
            MG  AGMFFGSA TPSS+
Sbjct: 1489 MG--AGMFFGSAGTPSSM 1504



 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/458 (76%), Positives = 374/458 (81%), Gaps = 56/458 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LM LPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVN+TRTHSTHPDDED G
Sbjct: 551 KEQMMNLLMHLPIWDGKMPQPSILKPKPLWTGKQVFSLIIPGNVNVTRTHSTHPDDEDDG 610

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LG+S+GSLLHIC LELGHEVCGRFYGNIQTVV
Sbjct: 611 PYKWISPGDTKVMVEHGELIMGILCKKTLGSSAGSLLHICMLELGHEVCGRFYGNIQTVV 670

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 671 NNWLLLEG----------------------------------------------HSIGIG 684

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 685 DTIADPQTYTEIQRAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 744

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 745 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 804

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 805 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 864

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS++ FE K++FDP+NER  
Sbjct: 865 VMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQSLPTLKLSNRVFEKKFKFDPTNER-- 922

Query: 492 LRNVSSLRRVVNSKPL--LIGCWKLTS-VEKEMNTVLQ 526
                 LRRV     L  L+G   + S +EKE   +++
Sbjct: 923 -----YLRRVFTEDILRELMGSGDVISELEKEWEQLVK 955



 Score =  316 bits (810), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 185/313 (59%), Positives = 215/313 (68%), Gaps = 32/313 (10%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S D   + E+E VD        R    ++L ++   G  
Sbjct: 1237 LNCIFNDDNAEKLVLRIRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQG-- 1294

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVVLP-------CNLMEVIF--ILQRWKLWGN 767
            I  + K +  L +     R + + +GE   +          +LM+V+    +   + + N
Sbjct: 1295 IEAISKVYMHLPQTDSKKRIVITETGEFKSIAEWLLETDGTSLMKVLSERDVDPVRTFSN 1354

Query: 768  ENLRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 824
            +    +C+I  VL   +VRKSVEKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 1355 D----ICEIFSVLGIEAVRKSVEKEMNAVLSFYGLYVNYRHLALLCDVMTAKGHLMAITR 1410

Query: 825  HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
            HGINRQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQL RMGTGCFDLLLD
Sbjct: 1411 HGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLARMGTGCFDLLLD 1470

Query: 885  AEKCKDGIEIPL--ATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSP--G 939
            AEKCK GIEIP+    GMMG  AGMFFGSA TPSSMSPQMTPWAQ STPAY ++ SP  G
Sbjct: 1471 AEKCKHGIEIPMNIGAGMMG--AGMFFGSAGTPSSMSPQMTPWAQGSTPAYGSVWSPGLG 1528

Query: 940  AAMTPGGPGFSPS 952
            + MTPGGPGFSPS
Sbjct: 1529 SGMTPGGPGFSPS 1541



 Score =  231 bits (590), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDP+RISPWLLRIELDRKRMTDKK
Sbjct: 1160 LRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPSRISPWLLRIELDRKRMTDKK 1219

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1220 LTMEHIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1251

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDDSK QDEE+ VDKMEDDMFLRCIE
Sbjct: 1252 RIRIMNSDDSKFQDEEEQVDKMEDDMFLRCIE 1283



 Score =  197 bits (502), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 100/170 (58%), Positives = 120/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS++ FE
Sbjct: 852 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQSLPTLKLSNRVFE 911

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRR+F ED+LRELMGSGDVISELEKE                      
Sbjct: 912 KKFKFDPTNERYLRRVFTEDILRELMGSGDVISELEKE---------------------- 949

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE+L +DREALR+IF +GE++VVLPCNL  +I+ +Q+
Sbjct: 950 -------------WEQLVKDREALRQIFPTGETSVVLPCNLQRMIWNVQK 986



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 776  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 835

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 836  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 877



 Score =  158 bits (399), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 74/77 (96%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1371 SVEKEMNAVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1431 DVLMDAASHAEVDPMRG 1447



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/43 (93%), Positives = 43/43 (100%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 509  VENIHVTPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLEK 551



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL VRPAVVM+GSARNQ+ + + L
Sbjct: 225 EECFILGMDPKYARPDWMIVTVLPVPPLPVRPAVVMYGSARNQDDLTHKL 274


>gi|324120506|dbj|BAJ78644.1| RNA polymerase II largest subunit [Metriocampa sp. 44]
          Length = 1738

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/501 (75%), Positives = 405/501 (80%), Gaps = 24/501 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V GED++SK ANENATLLFQCLVRSTLCTK VAE +RLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 996  VQGEDRMSKLANENATLLFQCLVRSTLCTKQVAEEFRLSSEAFEWLIGEIETRFQQAQVQ 1055

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1056 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1115

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1116 --------LTGNAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVN 1167

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1168 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1227

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQT
Sbjct: 1228 LVLRIRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQT 1287

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI++TE+G+FKAIA+WLLETDGTSLMKVLSERDVDPVRT+SNDICEIF VLGIEAV
Sbjct: 1288 DSKKRIVVTETGDFKAIAEWLLETDGTSLMKVLSERDVDPVRTYSNDICEIFSVLGIEAV 1347

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1348 RKSVEKEMNMVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1407

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL--ATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLPR+GTGCFDL+LDAEKCK GIEIP+    GM
Sbjct: 1408 TVDVLMDAAAHAEVDPMRGVSENIIMGQLPRLGTGCFDLILDAEKCKCGIEIPMNIGVGM 1467

Query: 1418 MGGPAGMFFGSAATPSSIPGP 1438
            +GG  G+FFGSA TPSS   P
Sbjct: 1468 LGG-HGVFFGSAGTPSSGMSP 1487



 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/445 (76%), Positives = 368/445 (82%), Gaps = 50/445 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQM+NILM LPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVNM RTHS HPD+ED G
Sbjct: 530 KEQMLNILMHLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNMIRTHSAHPDEEDDG 589

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICF+ELGHEVCG+FYGNIQTV+
Sbjct: 590 PYKWISPGDTKVMVEHGDLVMGILCKKTLGTSAGSLLHICFVELGHEVCGQFYGNIQTVI 649

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 650 NNWLLLEG----------------------------------------------HSIGIG 663

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           D+IADPQTYLEIQ  IKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 664 DSIADPQTYLEIQKTIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 723

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+G+KGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 724 KTGGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 783

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 784 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 843

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD T+RNSVGQLIQLRYGEDGL GE VE Q + TV LS++ FE K++FDPSNER  
Sbjct: 844 VMVHYDGTIRNSVGQLIQLRYGEDGLAGEHVEFQSLPTVKLSNRAFEKKFKFDPSNER-Y 902

Query: 492 LRNVSS---LRRVVNSKPLLIGCWK 513
           LR V +   +R V+ S  ++ G  K
Sbjct: 903 LRRVFTEDIMREVMGSGDVISGLEK 927



 Score =  300 bits (768), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 179/319 (56%), Positives = 214/319 (67%), Gaps = 33/319 (10%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S D   + E+E VD        R    ++L ++   G  
Sbjct: 1216 LNCIFNDDNAEKLVLRIRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQG-- 1273

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVVLP-------CNLMEVIF--ILQRWKLWGN 767
            I  + K +  L +     R + + +G+   +          +LM+V+    +   + + N
Sbjct: 1274 IEAIAKVYMHLPQTDSKKRIVVTETGDFKAIAEWLLETDGTSLMKVLSERDVDPVRTYSN 1333

Query: 768  ENLRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 824
            +    +C+I  VL   +VRKSVEKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 1334 D----ICEIFSVLGIEAVRKSVEKEMNMVLNFYGLYVNYRHLALLCDVMTAKGHLMAITR 1389

Query: 825  HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
            HGINRQDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLPR+GTGCFDL+LD
Sbjct: 1390 HGINRQDTGALMRCSFEETVDVLMDAAAHAEVDPMRGVSENIIMGQLPRLGTGCFDLILD 1449

Query: 885  AEKCKDGIEIPL--ATGMMGGPAGMFFGSAATPSS-MSPQMTPWAQSTPAY----NALMS 937
            AEKCK GIEIP+    GM+GG  G+FFGSA TPSS MSPQMTPWAQ+TP Y     +   
Sbjct: 1450 AEKCKCGIEIPMNIGVGMLGG-HGVFFGSAGTPSSGMSPQMTPWAQATPMYSGSGLSPGG 1508

Query: 938  PGAAMTPGGPGFSPSVAGE 956
             G+ MTPGGPGFSPS A +
Sbjct: 1509 LGSGMTPGGPGFSPSGASD 1527



 Score =  231 bits (589), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1139 LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1198

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1199 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1230

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDDSK Q+EE+ VDKMEDDMFLRCIE
Sbjct: 1231 RIRIMNSDDSKFQEEEEQVDKMEDDMFLRCIE 1262



 Score =  189 bits (481), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 97/170 (57%), Positives = 115/170 (67%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD T+RNSVGQLIQLRYGEDGL GE VE Q + TV LS++ FE
Sbjct: 831 GYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAGEHVEFQSLPTVKLSNRAFE 890

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDPSNER LRR+F ED++RE+MGSGDVIS LEK                       
Sbjct: 891 KKFKFDPSNERYLRRVFTEDIMREVMGSGDVISGLEK----------------------- 927

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L  DRE+LR+IF SGE+ VVLPCNL  +I+ +Q+
Sbjct: 928 ------------EWAQLTSDRESLRQIFPSGENKVVLPCNLHRMIWNVQK 965



 Score =  171 bits (432), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 755  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 814

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 815  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSV 856



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 74/77 (96%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1350 SVEKEMNMVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1409

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1410 DVLMDAAAHAEVDPMRG 1426



 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  I+GMDPK+ARPDWM+VTVLPVPPL+VRPAVVM GSARNQ+ + + L
Sbjct: 204 EECYIMGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGSARNQDDLTHKL 253



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+T RQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 488  VENIHITTRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 530


>gi|324120518|dbj|BAJ78650.1| RNA polymerase II largest subunit [Isolepisma japonica]
          Length = 1775

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/498 (75%), Positives = 405/498 (81%), Gaps = 25/498 (5%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED LS+QANENATLLFQCLVRSTLCTK+++++ RLS+EAFEWL+GEIE RFQQAQV 
Sbjct: 1017 VAGEDHLSRQANENATLLFQCLVRSTLCTKVISDDSRLSAEAFEWLIGEIEARFQQAQVQ 1076

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVF 1136

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1137 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVN 1188

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDP+RISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1189 VYYEMPDFDPSRISPWLLRIELDRKRMTDKKLTMEHIAEKINAGFGDDLNCIFNDDNAEK 1248

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQ 
Sbjct: 1249 LVLRIRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQQ 1308

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            +SKK+I+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1309 ESKKKIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAV 1368

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1369 RKSVEKEMNAVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1428

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL--ATGM 1417
            TVDVLMDAA+HAE DPMRGVSENIIMGQL RMGTGCFDLLLDAEKCK GIEIP+    GM
Sbjct: 1429 TVDVLMDAASHAEVDPMRGVSENIIMGQLARMGTGCFDLLLDAEKCKHGIEIPMNIGAGM 1488

Query: 1418 MGGPAGMFFGSAATPSSI 1435
            MG  AGMFFG+A TPSS+
Sbjct: 1489 MG--AGMFFGTAGTPSSM 1504



 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/458 (75%), Positives = 373/458 (81%), Gaps = 56/458 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILM LPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVN+ RTHSTHPD+ED G
Sbjct: 551 KEQMMNILMHLPIWDGKMPQPSILKPKPLWTGKQVFSLIIPGNVNVIRTHSTHPDEEDDG 610

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LG+S GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 611 PYKWISPGDTKVMVEHGELIMGILCKKTLGSSGGSLLHICMLELGHEVCGRFYGNIQTVI 670

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 671 NNWLLLEG----------------------------------------------HSIGIG 684

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 685 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 744

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 745 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 804

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 805 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 864

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS++ FE +++FDP+NER  
Sbjct: 865 VMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQSLPTIKLSNRLFEKRFKFDPTNER-- 922

Query: 492 LRNVSSLRRVVNSKPL--LIGCWKLTS-VEKEMNTVLQ 526
                 LRRV     L  L+G   + S +EKE   +++
Sbjct: 923 -----YLRRVFTEDVLRELMGSGDVISELEKEWEQLVK 955



 Score =  313 bits (802), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 182/313 (58%), Positives = 214/313 (68%), Gaps = 32/313 (10%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S D   + E+E VD        R    ++L ++   G  
Sbjct: 1237 LNCIFNDDNAEKLVLRIRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQG-- 1294

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVVLP-------CNLMEVIF--ILQRWKLWGN 767
            I  + K +  L +     + + + +GE   +          +LM+V+    +   + + N
Sbjct: 1295 IEAISKVYMHLPQQESKKKIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSN 1354

Query: 768  ENLRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 824
            +    +C+I  VL   +VRKSVEKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 1355 D----ICEIFSVLGIEAVRKSVEKEMNAVLSFYGLYVNYRHLALLCDVMTAKGHLMAITR 1410

Query: 825  HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
            HGINRQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQL RMGTGCFDLLLD
Sbjct: 1411 HGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLARMGTGCFDLLLD 1470

Query: 885  AEKCKDGIEIPL--ATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSP--G 939
            AEKCK GIEIP+    GMMG  AGMFFG+A TPSSMSPQMTPWAQ +TPAY +  SP  G
Sbjct: 1471 AEKCKHGIEIPMNIGAGMMG--AGMFFGTAGTPSSMSPQMTPWAQGATPAYASTWSPGLG 1528

Query: 940  AAMTPGGPGFSPS 952
            + MTPGGPGFSPS
Sbjct: 1529 SGMTPGGPGFSPS 1541



 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDP+RISPWLLRIELDRKRMTDKK
Sbjct: 1160 LRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPSRISPWLLRIELDRKRMTDKK 1219

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1220 LTMEHIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1251

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDDSK QDEE+ VDKMEDDMFLRCIE
Sbjct: 1252 RIRIMNSDDSKFQDEEEQVDKMEDDMFLRCIE 1283



 Score =  199 bits (505), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 101/170 (59%), Positives = 120/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS++ FE
Sbjct: 852 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQSLPTIKLSNRLFE 911

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FDP+NER LRR+F EDVLRELMGSGDVISELEKE                      
Sbjct: 912 KRFKFDPTNERYLRRVFTEDVLRELMGSGDVISELEKE---------------------- 949

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE+L +DREALR+IF SGE++VVLPCNL  +I+ +Q+
Sbjct: 950 -------------WEQLVKDREALRQIFPSGENSVVLPCNLQRMIWNVQK 986



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 776  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 835

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 836  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 877



 Score =  158 bits (399), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 74/77 (96%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1371 SVEKEMNAVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1431 DVLMDAASHAEVDPMRG 1447



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/43 (93%), Positives = 43/43 (100%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 509  VENIHVTPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLEK 551



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARPDWM+VTVLPVPPL VRPAVVM+GSARNQ+ + + L
Sbjct: 225 EECFILGMDPKFARPDWMIVTVLPVPPLPVRPAVVMYGSARNQDDLTHKL 274


>gi|307198840|gb|EFN79616.1| DNA-directed RNA polymerase II subunit RPB1 [Harpegnathos saltator]
          Length = 1906

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/498 (75%), Positives = 407/498 (81%), Gaps = 23/498 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D+LSKQANENATLLF+CLVRSTLCTK V+E +RLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 1016 VAGDDRLSKQANENATLLFRCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVS 1075

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1076 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1135

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1136 --------LTGAAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVN 1187

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPT+ISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1188 VYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1247

Query: 1180 LVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
            LVLRIRIMNSDD+K Q+ +E+ +DKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ
Sbjct: 1248 LVLRIRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1307

Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
            TD+KKRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA
Sbjct: 1308 TDAKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1367

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
            VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE
Sbjct: 1368 VRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1427

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM- 1417
            ETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+A G  
Sbjct: 1428 ETVDVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPIAVGAG 1487

Query: 1418 MGGPAGMFFGSAATPSSI 1435
            + G AGMFFGS    SS+
Sbjct: 1488 VMGSAGMFFGSVPGMSSM 1505



 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/432 (78%), Positives = 363/432 (84%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMPQPCILKPKP+WTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 550 KEQMMNLLMFLPSWDGKMPQPCILKPKPMWTGKQLFSLIIPGNVNMIRTHSTHPDEEDDG 609

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 610 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 669

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 670 NNWLLLEG----------------------------------------------HSIGIG 683

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 684 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 743

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 744 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 803

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 804 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 863

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ +S+K FE K++FDP+NER  
Sbjct: 864 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKVSNKAFEKKFKFDPTNER-- 921

Query: 492 LRNVSSLRRVVN 503
                 LRR+ N
Sbjct: 922 -----YLRRIFN 928



 Score =  289 bits (740), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 145/191 (75%), Positives = 157/191 (82%), Gaps = 7/191 (3%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1356 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1415

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK
Sbjct: 1416 QDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCK 1475

Query: 890  DGIEIPLATGM-MGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYN---ALMSPGAAMTPG 945
             GIEIP+A G  + G AGMFFGS    SSMSPQMTPW  +TP Y       +  + MTPG
Sbjct: 1476 AGIEIPIAVGAGVMGSAGMFFGSVPGMSSMSPQMTPWMGATPGYGASSMSPAMSSGMTPG 1535

Query: 946  GPGFSPSVAGE 956
            G  FSPS A +
Sbjct: 1536 GACFSPSGASD 1546



 Score =  222 bits (566), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 112/153 (73%), Positives = 119/153 (77%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPT+ISPWLLRIELDRKRMTDKK
Sbjct: 1159 LKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPWLLRIELDRKRMTDKK 1218

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1219 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1250

Query: 1649 RIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K Q+ +E+ +DKMEDDMFLRCIE
Sbjct: 1251 RIRIMNSDDNKFQETDEEPMDKMEDDMFLRCIE 1283



 Score =  196 bits (497), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 100/170 (58%), Positives = 118/170 (69%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ +S+K FE
Sbjct: 851 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKVSNKAFE 910

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIFNE+++RE+MGSG+VISELE+E      W+QL R          
Sbjct: 911 KKFKFDPTNERYLRRIFNEEIVREMMGSGEVISELERE------WEQLNR---------- 954

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DR  LREIF SGES VVLPCNL  +I+ +Q+
Sbjct: 955 -------------------DRTVLREIFPSGESKVVLPCNLQRMIWNVQK 985



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 775  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 834

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 835  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 876



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1371 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL+DAA+HAE DPMRG
Sbjct: 1431 DVLLDAASHAEVDPMRG 1447



 Score = 90.5 bits (223), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 53/64 (82%), Gaps = 1/64 (1%)

Query: 17  TSVYAWYVVPY-PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
           T+  AW ++ +   EES ILGMDPKFARPDWM+VTVLPVPPLSVRPAV+M+GSA+NQ+ +
Sbjct: 210 TAERAWEILKHIKDEESFILGMDPKFARPDWMIVTVLPVPPLSVRPAVIMYGSAKNQDDL 269

Query: 76  MNIL 79
            + L
Sbjct: 270 THKL 273



 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 508  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 550


>gi|324120532|dbj|BAJ78657.1| RNA polymerase II largest subunit [Galloisiana yuasai]
          Length = 1904

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/503 (75%), Positives = 403/503 (80%), Gaps = 22/503 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED LS+ AN NATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 1017 VAGEDHLSRSANANATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVS 1076

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1136

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1137 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVN 1188

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1189 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1248

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1249 LVLRIRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1308

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI++TE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1309 DSKKRIVVTETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAV 1368

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1369 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1428

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL-ATGMM 1418
            TVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+     M
Sbjct: 1429 TVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDLLLDAEKCKAGIEIPMNVGAGM 1488

Query: 1419 GGPAGMFFGSAATPSSIPGPPAW 1441
             G  GM FGSA TPS  P    W
Sbjct: 1489 MGGGGMLFGSAQTPSMSPHHTPW 1511



 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/452 (77%), Positives = 373/452 (82%), Gaps = 56/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLPIWDGKMPQP I+KPKPLWTGKQVFSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 551 KEQMMNILMFLPIWDGKMPQPSIMKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDDG 610

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCG+FYGNIQTV+
Sbjct: 611 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGQFYGNIQTVI 670

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLLLEG                                              HSIGIG
Sbjct: 671 NTWLLLEG----------------------------------------------HSIGIG 684

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 685 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 744

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 745 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 804

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 805 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 864

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++F+P+NER  
Sbjct: 865 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKSFEKKFKFEPTNER-- 922

Query: 492 LRNVSSLRRVVNSKPL--LIGCWKLTS-VEKE 520
                 LRRV N + L  L+G   + S +EKE
Sbjct: 923 -----YLRRVFNEEILKELMGSGDVISELEKE 949



 Score =  282 bits (722), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 150/192 (78%), Positives = 160/192 (83%), Gaps = 12/192 (6%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1356 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1415

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK
Sbjct: 1416 QDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDLLLDAEKCK 1475

Query: 890  DGIEIPL-ATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSP----GAAMTP 944
             GIEIP+     M G  GM FGSA TP SMSP  TPW+ STPAY  + SP    G+ MTP
Sbjct: 1476 AGIEIPMNVGAGMMGGGGMLFGSAQTP-SMSPHHTPWS-STPAY--MWSPSNLLGSGMTP 1531

Query: 945  GGPGFSPSVAGE 956
            GGP FSPS A +
Sbjct: 1532 GGPSFSPSGASD 1543



 Score =  230 bits (587), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 115/152 (75%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1160 LRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1219

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1220 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1251

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++K QDEE+ VDKMEDDMFLRCIE
Sbjct: 1252 RIRIMNSDENKFQDEEETVDKMEDDMFLRCIE 1283



 Score =  201 bits (510), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 103/170 (60%), Positives = 120/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 852 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKSFE 911

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++F+P+NER LRR+FNE++L+ELMGSGDVISELEKE      W+QL R          
Sbjct: 912 KKFKFEPTNERYLRRVFNEEILKELMGSGDVISELEKE------WEQLNR---------- 955

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 956 -------------------DREALRQIFPSGESKVVLPCNLQRMIWNVQK 986



 Score =  171 bits (432), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 776  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 835

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 836  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 877



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1371 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1431 DVLMDAASHAEVDPMRG 1447



 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/43 (93%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 509  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 551



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMD KFARPDWM++TVLPVPPL VRPAVVM+GSARNQ+ + + L
Sbjct: 225 EECFILGMDHKFARPDWMIITVLPVPPLCVRPAVVMYGSARNQDDLTHKL 274


>gi|324120556|dbj|BAJ78669.1| RNA polymerase II largest subunit [Thrips palmi]
          Length = 1708

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/496 (77%), Positives = 402/496 (81%), Gaps = 22/496 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED+LSK ANENATLLFQCLVRSTLCTK V E +RLSSEAFEWL+GEIE RFQQAQ  
Sbjct: 997  VAGEDRLSKMANENATLLFQCLVRSTLCTKCVGEEFRLSSEAFEWLIGEIETRFQQAQCS 1056

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1057 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1116

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1117 --------LSGVAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVN 1168

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFG+DLNCIFNDDNAEK
Sbjct: 1169 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGEDLNCIFNDDNAEK 1228

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1229 LVLRIRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1288

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV
Sbjct: 1289 DSKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1348

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1349 RKSVEKEMNAVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1408

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL-ATGMM 1418
            TVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK GIEIP+     M
Sbjct: 1409 TVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKYGIEIPMNIGVGM 1468

Query: 1419 GGPAGMFFGSAATPSS 1434
            G   GM FGSAA+PSS
Sbjct: 1469 GMGGGMLFGSAASPSS 1484



 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/452 (75%), Positives = 370/452 (81%), Gaps = 56/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMM +LMFLPIWDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPD+ED G
Sbjct: 531 KEQMMTLLMFLPIWDGKMPQPCILKPKPLWTGKQLFSLIIPGNVNLIRTHSTHPDEEDDG 590

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+ GILCKK+LGTS GSLLH+ FLELGHEVCG+FYGNIQTVV
Sbjct: 591 PYKWISPGDTKVMVEHGELVKGILCKKTLGTSPGSLLHVIFLELGHEVCGQFYGNIQTVV 650

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 651 NNWLLLEG----------------------------------------------HSIGIG 664

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD QTY EIQ AIKKAK DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 665 DTIADRQTYSEIQNAIKKAKADVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 724

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 725 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 784

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 785 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 844

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ L++K FE K++FDP+NER  
Sbjct: 845 VMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQFLSTIKLANKAFERKFKFDPTNER-- 902

Query: 492 LRNVSSLRRVVNSKPL--LIGCWKLTS-VEKE 520
                +LRR+ N   +  L+G  ++ S +EKE
Sbjct: 903 -----TLRRIFNEDVMKELMGSGEVVSELEKE 929



 Score =  277 bits (708), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 173/316 (54%), Positives = 207/316 (65%), Gaps = 31/316 (9%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S D   + E+E VD        R    ++L ++   G  
Sbjct: 1217 LNCIFNDDNAEKLVLRIRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQG-- 1274

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVVLP-------CNLMEVIF--ILQRWKLWGN 767
            I  + K +  L +     R + + +GE   +          +LM+V+    +   + + N
Sbjct: 1275 IEAIGKVYMHLPQTDSKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSN 1334

Query: 768  ENLRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 824
            +    +C+I  VL   +VRKSVEKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 1335 D----ICEIFQVLGIEAVRKSVEKEMNAVLSFYGLYVNYRHLALLCDVMTAKGHLMAITR 1390

Query: 825  HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
            HGINRQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLD
Sbjct: 1391 HGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLD 1450

Query: 885  AEKCKDGIEIPL-ATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNALMSP--GA 940
            AEKCK GIEIP+     MG   GM FGSAA+PS  SPQMTPW Q+ TP Y ++ SP   +
Sbjct: 1451 AEKCKYGIEIPMNIGVGMGMGGGMLFGSAASPS--SPQMTPWNQAGTPMYGSVWSPHIDS 1508

Query: 941  AMTPGGPGFSPSVAGE 956
             MTP G  FSPS + +
Sbjct: 1509 GMTPAGIAFSPSASSD 1524



 Score =  231 bits (589), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1140 LRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1199

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGF                            G+DLNCIFNDDNAEKLVL
Sbjct: 1200 LTMEQIAEKINAGF----------------------------GEDLNCIFNDDNAEKLVL 1231

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDDSK QDEE+ VDKMEDDMFLRCIE
Sbjct: 1232 RIRIMNSDDSKFQDEEEQVDKMEDDMFLRCIE 1263



 Score =  196 bits (499), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 98/170 (57%), Positives = 119/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ L++K FE
Sbjct: 832 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQFLSTIKLANKAFE 891

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIFNEDV++ELMGSG+V+SELEK                       
Sbjct: 892 RKFKFDPTNERTLRRIFNEDVMKELMGSGEVVSELEK----------------------- 928

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EWE+LC+DRE+LR+IF SG + V LPCNL  +I+ +Q+
Sbjct: 929 ------------EWEQLCKDRESLRQIFPSGTNKVALPCNLQRMIWNVQK 966



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 756  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 815

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 816  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 857



 Score =  158 bits (399), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 74/77 (96%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1351 SVEKEMNAVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1410

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1411 DVLMDAASHAEVDPMRG 1427



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/54 (77%), Positives = 46/54 (85%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K    T + + P
Sbjct: 489  VENIHVTPRQIITPQANQPVMGIVQDTLTAVRKMTKRDVFLEKEQMMTLLMFLP 542



 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 51/67 (76%), Gaps = 1/67 (1%)

Query: 14  VSNTSVYAWYVVPY-PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQ 72
           ++ T+   W ++ +   EE  ILGMDPKFARPDWM+VT LPVPPL VRPAVVM+GSARNQ
Sbjct: 188 IALTAERVWEILKHITDEECFILGMDPKFARPDWMIVTCLPVPPLCVRPAVVMYGSARNQ 247

Query: 73  EQMMNIL 79
           + + + L
Sbjct: 248 DDLTHKL 254


>gi|321464303|gb|EFX75312.1| hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex]
          Length = 1895

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/508 (73%), Positives = 403/508 (79%), Gaps = 52/508 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V GED+LS QAN+NATLLFQCLVRSTLC+K +AE YRLSSEAFEWL+GEIE RFQQAQ  
Sbjct: 1017 VVGEDKLSIQANQNATLLFQCLVRSTLCSKRLAEEYRLSSEAFEWLIGEIETRFQQAQAQ 1076

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPR--LKEIINISKNPKA---- 1130

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                     PS   F        L   A + AE   NVL       L +VTANTAIYYDP
Sbjct: 1131 ---------PSLTVF--------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 1173

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDK+LTME I+EK+NAGF
Sbjct: 1174 DPQNTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKRLTMEQIAEKVNAGF 1233

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSDDSK  +EE+ VDKMEDDMFLRCIEANMLSDMTLQ
Sbjct: 1234 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQ 1293

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE+IGKVYMHLPQTD KKRI++TE+GEFKAIA+WLLETDGT LM+VLSERDVDPVRT+S
Sbjct: 1294 GIESIGKVYMHLPQTDQKKRIVVTEAGEFKAIAEWLLETDGTQLMRVLSERDVDPVRTYS 1353

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIF VLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 1354 NDICEIFAVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1413

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTGALMRCSFEETVDVL++AA HAE DP+RGVSENII+GQLPRMGTGCFDLLLDAEK
Sbjct: 1414 NRQDTGALMRCSFEETVDVLLEAAGHAEVDPLRGVSENIILGQLPRMGTGCFDLLLDAEK 1473

Query: 1405 CKDGIEIPLATGMMGGPAGMFFGSAATP 1432
            CK GIEIPL+ G   G  GMFFGSAATP
Sbjct: 1474 CKQGIEIPLSIGAGMG-TGMFFGSAATP 1500



 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/452 (74%), Positives = 364/452 (80%), Gaps = 56/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMPQP ILKP+P WTGKQ+F+LIIPGNVNM RTHSTHPDDED G
Sbjct: 551 KEQMMNLLMFLPTWDGKMPQPAILKPRPQWTGKQLFTLIIPGNVNMIRTHSTHPDDEDEG 610

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VE+G L+MGILCKK+LG S+ SLLHI F+ELGHEVCGRFYGNIQTV+
Sbjct: 611 PYKWISPGDTKVMVENGELVMGILCKKTLGASAASLLHIIFMELGHEVCGRFYGNIQTVI 670

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 671 NNWLLYEG----------------------------------------------HSIGIG 684

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYL+IQ  IKKAKEDVIEVIQK+HN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 685 DTIADPQTYLDIQATIKKAKEDVIEVIQKSHNDELEPTPGNTLRQTFENQVNRILNDARD 744

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 745 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 804

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 805 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 864

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGL  E+VE Q + TV LS+K FE K++F+PSNER  
Sbjct: 865 VMVHYDGTVRNSVGQLIQLRYGEDGLSAESVEFQTMPTVKLSNKAFEKKFKFEPSNER-- 922

Query: 492 LRNVSSLRRVVN---SKPLLIGCWKLTSVEKE 520
                 LRR+ N   ++ L+     +T +E E
Sbjct: 923 -----YLRRIFNEEITRELISSAEVITEIEHE 949



 Score =  310 bits (795), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 179/316 (56%), Positives = 216/316 (68%), Gaps = 30/316 (9%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S D     E+E VD        R    ++L ++   G  
Sbjct: 1237 LNCIFNDDNAEKLVLRIRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQG-- 1294

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVV----LPCNLMEVIFILQRW-----KLWGN 767
            I  + K +  L +  +  R + + +GE   +    L  +  +++ +L        + + N
Sbjct: 1295 IESIGKVYMHLPQTDQKKRIVVTEAGEFKAIAEWLLETDGTQLMRVLSERDVDPVRTYSN 1354

Query: 768  ENLRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 824
            +    +C+I  VL   +VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 1355 D----ICEIFAVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 1410

Query: 825  HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
            HGINRQDTGALMRCSFEETVDVL++AA HAE DP+RGVSENII+GQLPRMGTGCFDLLLD
Sbjct: 1411 HGINRQDTGALMRCSFEETVDVLLEAAGHAEVDPLRGVSENIILGQLPRMGTGCFDLLLD 1470

Query: 885  AEKCKDGIEIPLATGMMGGPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALMSP--GA 940
            AEKCK GIEIPL+ G   G  GMFFGSAATP + MSPQMTPW Q +TPAY ++ SP  G+
Sbjct: 1471 AEKCKQGIEIPLSIGAGMG-TGMFFGSAATPMAGMSPQMTPWNQVATPAYGSVWSPGLGS 1529

Query: 941  AMTPGGPGFSPSVAGE 956
             MTPGGP FSPSVA +
Sbjct: 1530 GMTPGGPAFSPSVASD 1545



 Score =  228 bits (582), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/152 (74%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDK+
Sbjct: 1160 LRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKR 1219

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EK+NAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1220 LTMEQIAEKVNAGFG----------------------------DDLNCIFNDDNAEKLVL 1251

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDDSK  +EE+ VDKMEDDMFLRCIE
Sbjct: 1252 RIRIMNSDDSKFSEEEEQVDKMEDDMFLRCIE 1283



 Score =  183 bits (464), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 115/170 (67%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGL  E+VE Q + TV LS+K FE
Sbjct: 852 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLSAESVEFQTMPTVKLSNKAFE 911

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++F+PSNER LRRIFNE++ REL+ S +VI+E+E E                      
Sbjct: 912 KKFKFEPSNERYLRRIFNEEITRELISSAEVITEIEHE---------------------- 949

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE+L +DREALR+IF +GE+ VVLPCNL  +I+ +Q+
Sbjct: 950 -------------WEQLDKDREALRQIFPTGENKVVLPCNLQRMIWNVQK 986



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 776  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 835

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 836  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 877



 Score =  158 bits (399), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/77 (93%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1371 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL++AA HAE DP+RG
Sbjct: 1431 DVLLEAAGHAEVDPLRG 1447



 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VT LPVPPL+VRPAVVMHGSARNQ+ + + L
Sbjct: 225 EECAILGMDPKYARPDWMIVTCLPVPPLAVRPAVVMHGSARNQDDLTHKL 274



 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTL AVRKMTKRDVFL+K
Sbjct: 509  VENIHVTPRQIITPQANKPVMGIVQDTLCAVRKMTKRDVFLEK 551


>gi|324120582|dbj|BAJ78682.1| RNA polymerase II largest subunit [Eretes sticticus]
          Length = 1677

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/504 (74%), Positives = 401/504 (79%), Gaps = 23/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1014 VAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQCA 1073

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1074 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1133

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVIPEDQEFVN
Sbjct: 1134 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVN 1185

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDP RISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1186 VYYEMPDFDPNRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1245

Query: 1180 LVLRIRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1237
            LVLRIRIMN+DD K  +   ++ VDKM+DDMFLRCIEANMLSDMTLQGIEAI KVYMHLP
Sbjct: 1246 LVLRIRIMNTDDGKFGEAGADEEVDKMDDDMFLRCIEANMLSDMTLQGIEAISKVYMHLP 1305

Query: 1238 QTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1297
            QTD+KKRI+ITE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIE
Sbjct: 1306 QTDAKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFAVLGIE 1365

Query: 1298 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1357
            AVRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF
Sbjct: 1366 AVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1425

Query: 1358 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM 1417
            EETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK GI IP ATG 
Sbjct: 1426 EETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKAGIAIPQATGA 1485

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
                +GMFF SAATPS  P    W
Sbjct: 1486 DLLSSGMFFSSAATPSMSPNMTPW 1509



 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/433 (80%), Positives = 363/433 (83%), Gaps = 53/433 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++EQMMNILMFLPIWDGKMP+P ILKPKPLWTGKQVFSLIIPGNVNM RTHSTHPDDED 
Sbjct: 547 DKEQMMNILMFLPIWDGKMPRPAILKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDDEDD 606

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+MGILCKK+LG S+GSLLHICFLELGHEVCGRFYGNIQTV
Sbjct: 607 GPYKWISPGDTKVMVEHGELVMGILCKKTLGASAGSLLHICFLELGHEVCGRFYGNIQTV 666

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           +N WLLLEG                                              HSIGI
Sbjct: 667 INTWLLLEG----------------------------------------------HSIGI 680

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 681 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 740

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 741 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 800

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 801 FIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 860

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE K+RFDPSNER 
Sbjct: 861 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGELVEFQTLPTVKLSNKAFEKKFRFDPSNER- 919

Query: 491 TLRNVSSLRRVVN 503
                  LRR+ N
Sbjct: 920 ------HLRRIFN 926



 Score =  287 bits (734), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 146/194 (75%), Positives = 156/194 (80%), Gaps = 11/194 (5%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1355 ICEIFAVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1414

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK
Sbjct: 1415 QDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1474

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNA--LMSP-----GAAM 942
             GI IP ATG     +GMFF SAATP SMSP MTPW  +   Y A  + SP     G+  
Sbjct: 1475 AGIAIPQATGADLLSSGMFFSSAATP-SMSPNMTPWNHAGTPYGAGSVWSPSQGYLGSGA 1533

Query: 943  TPGGPGFSPSVAGE 956
            TPGG  FSPS + +
Sbjct: 1534 TPGGAAFSPSASSD 1547



 Score =  217 bits (553), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 110/154 (71%), Positives = 116/154 (75%), Gaps = 30/154 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDP RISPWLLRIELDRKRMTDKK
Sbjct: 1157 LRKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPNRISPWLLRIELDRKRMTDKK 1216

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1217 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1248

Query: 1649 RIRIMNSDDSKMQD--EEDAVDKMEDDMFLRCIE 1680
            RIRIMN+DD K  +   ++ VDKM+DDMFLRCIE
Sbjct: 1249 RIRIMNTDDGKFGEAGADEEVDKMDDDMFLRCIE 1282



 Score =  204 bits (520), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 104/170 (61%), Positives = 120/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 849 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGELVEFQTLPTVKLSNKAFE 908

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDPSNER LRRIFNED++R+LMGSG+VISELE+E                      
Sbjct: 909 KKFRFDPSNERHLRRIFNEDIIRQLMGSGEVISELERE---------------------- 946

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE+L +DREALR+IF +GES VVLPCNL  +I+ +Q+
Sbjct: 947 -------------WEQLSKDREALRQIFPTGESKVVLPCNLQRMIWNVQK 983



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 773  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 832

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 833  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 874



 Score =  160 bits (404), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1370 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1429

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1430 DVLMDAASHAEVDPMRG 1446



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+DK
Sbjct: 506  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIDK 548



 Score = 53.9 bits (128), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARPDWM+VTVLPVPPL VRPAVVM+GSA+NQ+ + + L
Sbjct: 222 EECFILGMDPKFARPDWMIVTVLPVPPLPVRPAVVMYGSAKNQDDLTHKL 271


>gi|19528357|gb|AAL90293.1| LD43558p [Drosophila melanogaster]
          Length = 1429

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/519 (71%), Positives = 405/519 (78%), Gaps = 54/519 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWLVGEIE RFQQAQ  
Sbjct: 557  VTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQAN 616

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 617  PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPR--LKEIINISKKPKA---- 670

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                     PS   F        L   A + AE   NVL       L +VTANTAIYYDP
Sbjct: 671  ---------PSLTVF--------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 713

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GF
Sbjct: 714  DPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGF 773

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            G+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ
Sbjct: 774  GEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQ 833

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIEAIGKVYMHLPQTDSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT S
Sbjct: 834  GIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSS 893

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIFQVLGIEAVRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 894  NDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 953

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEK
Sbjct: 954  NRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEK 1013

Query: 1405 CKDGIEIP--LATGMMGGPAGMFFGSAATPSSIPGPPAW 1441
            C+ GIEIP  L   M+GG A MF G  +TPS  P    W
Sbjct: 1014 CRFGIEIPNTLGNSMLGG-AAMFIGGGSTPSMTPPMTPW 1051



 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/418 (78%), Positives = 353/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WD KMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 91  REQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDEG 150

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKKSLGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 151 PYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 210

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 211 NNWLLFEG----------------------------------------------HSIGIG 224

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 225 DTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 284

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 285 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 344

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 345 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 404

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 405 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNER 462



 Score =  290 bits (743), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 146/190 (76%), Positives = 158/190 (83%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 896  ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 955

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 956  QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1015

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAAMTPGG 946
             GIEIP  L   M+GG A MF G  +TP SM+P MTPWA  +TP Y +     +AMTPGG
Sbjct: 1016 FGIEIPNTLGNSMLGG-AAMFIGGGSTP-SMTPPMTPWANCNTPRYFSPPGHVSAMTPGG 1073

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1074 PSFSPSAASD 1083



 Score =  221 bits (564), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 700  LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 759

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 760  LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 791

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 792  RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 823



 Score =  172 bits (436), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 86/170 (50%), Positives = 111/170 (65%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 392 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFE 451

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER ++++F +DV++E+  S + I ELE                        
Sbjct: 452 KRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELE------------------------ 487

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW++L  DR++LR+IF +GES VVLPCNL  +I+ +Q+
Sbjct: 488 -----------AEWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQK 526



 Score =  167 bits (422), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 316  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 375

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 376  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 417



 Score =  163 bits (412), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
           SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 911 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 970

Query: 576 DVLMDAAAHAEADPMRG 592
           DVLMDAAAHAE DPMRG
Sbjct: 971 DVLMDAAAHAETDPMRG 987



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 49   VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 91


>gi|308229954|gb|ADO24384.1| RNA polymerase II large subunit, partial [Drosophila nigromaculata]
          Length = 1872

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/508 (73%), Positives = 403/508 (79%), Gaps = 24/508 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK VAE +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1008 VTGNDRISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGEIETRFQQAQAN 1067

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1068 PGEMVGALAAQSLGEPATQMTLNTSHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1127

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1128 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVN 1179

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1180 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1239

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1240 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1299

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 1300 DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1359

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1360 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1419

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 1420 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSM 1479

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAWYPIH 1445
            +GG A MF G  +TPS  P    W   H
Sbjct: 1480 LGG-AAMFIGGGSTPSMTPPMTPWVNCH 1506



 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/418 (78%), Positives = 355/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 542 REQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 601

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 602 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 661

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 662 NNWLLLEG----------------------------------------------HSIGIG 675

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 676 DTIADPQTYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 735

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 736 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 795

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 796 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 855

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 856 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKVFEKRFKFDWSNER 913



 Score =  287 bits (734), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 157/190 (82%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1347 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1406

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1407 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1466

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNALMSPGAAMTPGG 946
             GIEIP  L + M+GG A MF G  +TP SM+P MTPW    TP Y +     +AMTPGG
Sbjct: 1467 FGIEIPNSLGSSMLGG-AAMFIGGGSTP-SMTPPMTPWVNCHTPRYFSPPGHVSAMTPGG 1524

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1525 PSFSPSAASD 1534



 Score =  221 bits (562), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1151 LRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1210

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1211 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1242

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1243 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1274



 Score =  170 bits (431), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 109/170 (64%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 843 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKVFE 902

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER +R++F +DV++E+  S D I ELE                        
Sbjct: 903 KRFKFDWSNERYMRKVFTDDVIKEMTDSSDAIQELE------------------------ 938

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW+KL  DR+ LR IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 939 -----------GEWDKLVTDRDNLRTIFPNGDSKVVLPCNLQRMIWNVQK 977



 Score =  166 bits (421), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 767  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 826

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 827  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 868



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1362 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1421

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1422 DVLMDAAAHAETDPMRG 1438



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 216 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 265



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 500  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 542


>gi|195446609|ref|XP_002070845.1| GK25468 [Drosophila willistoni]
 gi|194166930|gb|EDW81831.1| GK25468 [Drosophila willistoni]
          Length = 1890

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/519 (71%), Positives = 406/519 (78%), Gaps = 54/519 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V G D++SKQANENATLLFQCLVRSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1015 VTGNDRISKQANENATLLFQCLVRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQAN 1074

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPR--LKEIINISKKPKA---- 1128

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                     PS   F        L   A + AE   NVL       L +VTANTAIYYDP
Sbjct: 1129 ---------PSLTVF--------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 1171

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GF
Sbjct: 1172 DPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGF 1231

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            G+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ
Sbjct: 1232 GEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQ 1291

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIEAIGKVYMHLPQTDSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT S
Sbjct: 1292 GIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSS 1351

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIFQVLGIEAVRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 1352 NDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1411

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEK
Sbjct: 1412 NRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEK 1471

Query: 1405 CKDGIEIP--LATGMMGGPAGMFFGSAATPSSIPGPPAW 1441
            C+ GIEIP  L + MMGG A MF G  +TPS  P    W
Sbjct: 1472 CRFGIEIPNTLGSAMMGG-AAMFIGGGSTPSMTPPMTPW 1509



 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/418 (78%), Positives = 356/418 (85%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMPQPCILKP+P+WTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 REQMMNLLMFLPTWDGKMPQPCILKPRPMWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 669 NNWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQMAIKKAK+DVI VIQKAHNM+L+PTPGNTLRQTFEN+VNRILNDARD
Sbjct: 683 DTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELDPTPGNTLRQTFENKVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD +NER
Sbjct: 863 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWTNER 920



 Score =  289 bits (740), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 144/190 (75%), Positives = 158/190 (83%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1414 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1473

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAAMTPGG 946
             GIEIP  L + MMGG A MF G  +TP SM+P MTPW   +TP Y +     ++MTPGG
Sbjct: 1474 FGIEIPNTLGSAMMGG-AAMFIGGGSTP-SMTPPMTPWVNCNTPRYFSPQGHASSMTPGG 1531

Query: 947  PGFSPSVAGE 956
            P FSP+ A +
Sbjct: 1532 PSFSPAAASD 1541



 Score =  221 bits (562), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1218 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1249

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1281



 Score =  169 bits (429), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 85/170 (50%), Positives = 111/170 (65%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD +NER +R++F ++V++E+  S D I ELE E                      
Sbjct: 910 KRFKFDWTNERYMRKVFTDEVIKEMTDSSDAIQELESE---------------------- 947

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        W++L  DR++LR+IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 948 -------------WDRLVVDRDSLRQIFPNGDSKVVLPCNLQRMIWNVQK 984



 Score =  166 bits (421), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1369 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1429 DVLMDAAAHAETDPMRG 1445



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 223 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 272



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 507  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549


>gi|328722767|ref|XP_001943949.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Acyrthosiphon pisum]
          Length = 1958

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/504 (75%), Positives = 406/504 (80%), Gaps = 23/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED+LSK+AN+NATLLFQCLVRSTLCTKLV+EN+RLSSEAFEWLVGEIENRF+QAQ  
Sbjct: 1016 VAGEDELSKKANKNATLLFQCLVRSTLCTKLVSENFRLSSEAFEWLVGEIENRFKQAQAQ 1075

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1076 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1135

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1136 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIREDQEFVN 1187

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNA+K
Sbjct: 1188 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNADK 1247

Query: 1180 LVLRIRIMNSDDSKMQ--DEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1237
            L+LRIRIMN +D KM   D+ED VDKMEDDMFLRCIEANMLSDMTLQGI++IGKVYMHLP
Sbjct: 1248 LILRIRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGIDSIGKVYMHLP 1307

Query: 1238 QTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1297
            QTDSKKRIIIT++GEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIE
Sbjct: 1308 QTDSKKRIIITDTGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIE 1367

Query: 1298 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1357
            AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF
Sbjct: 1368 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1427

Query: 1358 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM 1417
            EETVDVL+DAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEK KDGIEIP+  G 
Sbjct: 1428 EETVDVLLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKAKDGIEIPMDNGY 1487

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            MG   G  F +A TPS  P    W
Sbjct: 1488 MGMGGGGMFMAAGTPSMSPAMTPW 1511



 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/418 (81%), Positives = 358/418 (85%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LM LPIWDGKMP PCILKPKP+WTGKQVFSLIIPGNVNM RTHSTHPD+ED+G
Sbjct: 550 KEQMMNLLMHLPIWDGKMPTPCILKPKPMWTGKQVFSLIIPGNVNMIRTHSTHPDEEDNG 609

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTVV
Sbjct: 610 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVV 669

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 670 NNWLLYEG----------------------------------------------HSIGIG 683

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 684 DTIADPQTYLEIQRAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 743

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYN+LKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 744 KTGGSAKKSLTEYNSLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 803

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 804 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 863

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMVHYD TVRNSVGQLIQLRYGEDGLCGEAVE Q I T+  SHKKFE++++FD SNER
Sbjct: 864 VMVHYDGTVRNSVGQLIQLRYGEDGLCGEAVEFQSIATIEPSHKKFENEFKFDVSNER 921



 Score =  275 bits (704), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 148/190 (77%), Positives = 157/190 (82%), Gaps = 7/190 (3%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1357 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1416

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVL+DAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEK K
Sbjct: 1417 QDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKAK 1476

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAY--NALMSPGAAMTPGG 946
            DGIEIP+  G MG   G  F +A TP SMSP MTPW Q STP Y  N   S    MTPGG
Sbjct: 1477 DGIEIPMDNGYMGMGGGGMFMAAGTP-SMSPAMTPWDQTSTPMYQNNWSSSLETGMTPGG 1535

Query: 947  PGFSPSVAGE 956
            PGFSP+ + E
Sbjct: 1536 PGFSPAGSSE 1545



 Score =  225 bits (573), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 114/154 (74%), Positives = 118/154 (76%), Gaps = 30/154 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1159 LRKVTANTAIYYDPDPQNTVIREDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1218

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTMEAISEKINAGFG                            DDLNCIFNDDNA+KL+L
Sbjct: 1219 LTMEAISEKINAGFG----------------------------DDLNCIFNDDNADKLIL 1250

Query: 1649 RIRIMNSDDSKMQ--DEEDAVDKMEDDMFLRCIE 1680
            RIRIMN +D KM   D+ED VDKMEDDMFLRCIE
Sbjct: 1251 RIRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIE 1284



 Score =  190 bits (483), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 98/170 (57%), Positives = 116/170 (68%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGEAVE Q I T+  SHKKFE
Sbjct: 851 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEAVEFQSIATIEPSHKKFE 910

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           ++++FD SNER +R+IF EDVL+++MGS D ++ELEKE      W+Q             
Sbjct: 911 NEFKFDVSNERHMRKIFTEDVLKDMMGSNDTVAELEKE------WEQ------------- 951

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                           L  DR+ LREIF SGES VVLPCNL  +I+ +Q+
Sbjct: 952 ----------------LTNDRDTLREIFPSGESKVVLPCNLKRMIWNVQK 985



 Score =  170 bits (430), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 775  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 834

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 835  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 876



 Score =  161 bits (407), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1372 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1431

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL+DAA+HAE DPMRG
Sbjct: 1432 DVLLDAASHAEVDPMRG 1448



 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTA+RKMTKRDVF++K
Sbjct: 508  VENIHITPRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFIEK 550



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE +I+GMDPKFARPDWM++TVLPVPPL VRPA+VM GS RNQ+ + + L
Sbjct: 224 EEVVIMGMDPKFARPDWMVLTVLPVPPLPVRPAIVMFGSMRNQDDLTHKL 273


>gi|308229950|gb|ADO24382.1| RNA polymerase II large subunit, partial [Drosophila falleni]
          Length = 1847

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/508 (73%), Positives = 403/508 (79%), Gaps = 24/508 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK VAE +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 996  VTGNDRISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGEIETRFQQAQAN 1055

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1056 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1115

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1116 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVN 1167

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1168 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1227

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1228 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1287

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 1288 DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1347

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1348 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1407

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 1408 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSM 1467

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAWYPIH 1445
            +GG A MF G  +TPS  P    W   H
Sbjct: 1468 LGG-AAMFIGGGSTPSMTPPMTPWVNCH 1494



 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/418 (78%), Positives = 353/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 530 REQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 589

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 590 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 649

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 650 NNWLLLEG----------------------------------------------HSIGIG 663

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 664 DTIADPQTYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 723

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 724 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 783

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYL GLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 784 IKDDYGPESRGFVENSYLTGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 843

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE  E Q + TV LS+K FE +++FD SNER
Sbjct: 844 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELAEFQNMPTVKLSNKVFEKRFKFDWSNER 901



 Score =  287 bits (735), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 157/190 (82%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1335 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1394

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1395 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1454

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNALMSPGAAMTPGG 946
             GIEIP  L + M+GG A MF G  +TP SM+P MTPW    TP Y +     +AMTPGG
Sbjct: 1455 FGIEIPNSLGSSMLGG-AAMFIGGGSTP-SMTPPMTPWVNCHTPRYFSPPGHVSAMTPGG 1512

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1513 PSFSPSAASD 1522



 Score =  220 bits (561), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1139 LRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1198

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1199 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1230

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1231 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1262



 Score =  169 bits (427), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 108/170 (63%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE  E Q + TV LS+K FE
Sbjct: 831 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELAEFQNMPTVKLSNKVFE 890

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER +R++F +DV++E+  S D I ELE                        
Sbjct: 891 KRFKFDWSNERYMRKVFTDDVIKEMTDSSDAIQELE------------------------ 926

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW+KL  DR+ LR IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 927 -----------GEWDKLVTDRDNLRTIFPNGDSKVVLPCNLQRMIWNVQK 965



 Score =  165 bits (417), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 86/102 (84%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYL GLTPSEF+FHAM
Sbjct: 755  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLTGLTPSEFYFHAM 814

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 815  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 856



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1350 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1409

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1410 DVLMDAAAHAETDPMRG 1426



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 204 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 253



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 488  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 530


>gi|308229958|gb|ADO24386.1| RNA polymerase II large subunit, partial [Drosophila quinaria]
          Length = 1847

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/508 (73%), Positives = 403/508 (79%), Gaps = 24/508 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK VAE +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 996  VTGNDRISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGEIETRFQQAQAN 1055

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1056 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1115

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1116 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVN 1167

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1168 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1227

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1228 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1287

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 1288 DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1347

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1348 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1407

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 1408 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSM 1467

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAWYPIH 1445
            +GG A MF G  +TPS  P    W   H
Sbjct: 1468 LGG-AAMFIGGGSTPSMTPPMTPWVNCH 1494



 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/418 (78%), Positives = 354/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 530 REQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 589

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 590 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 649

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 650 NNWLLFEG----------------------------------------------HSIGIG 663

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 664 DTIADPQTYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 723

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 724 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 783

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 784 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 843

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 844 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKVFEKRFKFDWSNER 901



 Score =  287 bits (734), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 157/190 (82%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1335 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1394

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1395 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1454

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNALMSPGAAMTPGG 946
             GIEIP  L + M+GG A MF G  +TP SM+P MTPW    TP Y +     +AMTPGG
Sbjct: 1455 FGIEIPNSLGSSMLGG-AAMFIGGGSTP-SMTPPMTPWVNCHTPRYFSPPGHVSAMTPGG 1512

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1513 PSFSPSAASD 1522



 Score =  220 bits (561), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1139 LRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1198

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1199 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1230

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1231 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1262



 Score =  171 bits (434), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 109/170 (64%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 831 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKVFE 890

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER +R++F +DV++E+  S D I ELE E                      
Sbjct: 891 KRFKFDWSNERYMRKVFTDDVIKEMTDSSDAIQELEGE---------------------- 928

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WEKL  DR+ LR IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 929 -------------WEKLVTDRDNLRTIFPNGDSKVVLPCNLQRMIWNVQK 965



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 755  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 814

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 815  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 856



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1350 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1409

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1410 DVLMDAAAHAETDPMRG 1426



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 204 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 253



 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/43 (83%), Positives = 40/43 (93%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
             ENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 488  AENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 530


>gi|324120592|dbj|BAJ78687.1| RNA polymerase II largest subunit [Ctenocephalides felis]
          Length = 1749

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/517 (72%), Positives = 406/517 (78%), Gaps = 52/517 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            VAG D+LSKQANENATLLFQCL+RSTLCTK V+E +RLS++AF  L+GEIE RFQQAQ  
Sbjct: 1014 VAGNDRLSKQANENATLLFQCLIRSTLCTKYVSEEFRLSTDAFNLLIGEIETRFQQAQCN 1073

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 1074 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPR--LKEIINISKKPKA---- 1127

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                     PS   F        L   A + AE   NVL       L +VTANTAIYYDP
Sbjct: 1128 ---------PSLTVF--------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 1170

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQNTVI EDQEFVN+YYEMPDFDPT+ISPWLLRIELDRKRMTDKKLTME I+EKINAGF
Sbjct: 1171 DPQNTVISEDQEFVNIYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGF 1230

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ
Sbjct: 1231 GDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQ 1290

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIEAIGKVYMHLPQTDSKKRIIITE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFS
Sbjct: 1291 GIEAIGKVYMHLPQTDSKKRIIITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFS 1350

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIF VLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 1351 NDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1410

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDA+K
Sbjct: 1411 NRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDADK 1470

Query: 1405 CKDGIEIPLATGMMGGPAGMFFGSAATPSSIPGPPAW 1441
            CKDGI+I    G + G  G FFG A TPS+ P    W
Sbjct: 1471 CKDGIDIANTLGGVVGDIG-FFGIATTPSASPRMTPW 1506



 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/432 (78%), Positives = 360/432 (83%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+F+LIIPGNVNM RTHSTHPD+ED G
Sbjct: 548 KEQMMNILMFLPTWDGKMPQPCILKPKPLWTGKQIFTLIIPGNVNMIRTHSTHPDEEDDG 607

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCK++LG S+GSLLHI FLELGHE  GRFYGNIQTVV
Sbjct: 608 PYKWISPGDTKVMVEHGQLIMGILCKRTLGASAGSLLHIVFLELGHETAGRFYGNIQTVV 667

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 668 NNWLLLEG----------------------------------------------HSIGIG 681

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY+EIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 682 DTIADPQTYMEIQRAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 741

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 742 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 801

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 802 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 861

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGEAVE Q + T+ LS+K FE K++F+ SNER  
Sbjct: 862 VMVHYDGTVRNSVGQLIQLRYGEDGLCGEAVEFQNLPTIKLSNKVFEKKFKFELSNER-- 919

Query: 492 LRNVSSLRRVVN 503
                 LR++ N
Sbjct: 920 -----YLRKIFN 926



 Score =  285 bits (729), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 175/316 (55%), Positives = 210/316 (66%), Gaps = 31/316 (9%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S D   + E+E VD        R    ++L ++   G  
Sbjct: 1234 LNCIFNDDNAEKLVLRIRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQG-- 1291

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVV----LPCNLMEVIFILQRW-----KLWGN 767
            I  + K +  L +     R I + +GE   +    L  +   ++ +L        + + N
Sbjct: 1292 IEAIGKVYMHLPQTDSKKRIIITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSN 1351

Query: 768  ENLRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 824
            +    +C+I  VL   +VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 1352 D----ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 1407

Query: 825  HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
            HGINRQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLD
Sbjct: 1408 HGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLD 1467

Query: 885  AEKCKDGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNA-LMSPG--A 940
            A+KCKDGI+I    G + G  G FFG A TPS+ SP+MTPW+Q +TPA+ A   SP   +
Sbjct: 1468 ADKCKDGIDIANTLGGVVGDIG-FFGIATTPSA-SPRMTPWSQGATPAHGASAWSPNQYS 1525

Query: 941  AMTPGGPGFSPSVAGE 956
             MTPGGP FSPS A +
Sbjct: 1526 MMTPGGPSFSPSGASD 1541



 Score =  229 bits (584), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVN+YYEMPDFDPT+ISPWLLRIELDRKRMTDKK
Sbjct: 1157 LRKVTANTAIYYDPDPQNTVISEDQEFVNIYYEMPDFDPTKISPWLLRIELDRKRMTDKK 1216

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1217 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1248

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K QDEE+ VDKMEDDMFLRCIE
Sbjct: 1249 RIRIMNSDDNKFQDEEENVDKMEDDMFLRCIE 1280



 Score =  187 bits (475), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 101/170 (59%), Positives = 116/170 (68%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGEAVE Q + T+ LS+K FE
Sbjct: 849 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEAVEFQNLPTIKLSNKVFE 908

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++F+ SNER LR+IFNEDV++EL  SG VISELE E      W+QL R          
Sbjct: 909 KKFKFELSNERYLRKIFNEDVVKELTESGYVISELESE------WEQLNR---------- 952

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR IFS+GES VVLPCNL  +I+ +Q+
Sbjct: 953 -------------------DREALRSIFSNGESKVVLPCNLQRMIWNVQK 983



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 773  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 832

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 833  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 874



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1368 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1427

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1428 DVLMDAASHAEVDPMRG 1444



 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 506  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 548



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGMDPKFARPDWM++TV+PVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 222 EECFVLGMDPKFARPDWMIITVMPVPPLAVRPAVVMFGAAKNQDDLTHKL 271


>gi|308229956|gb|ADO24385.1| RNA polymerase II large subunit, partial [Drosophila phalerata]
          Length = 1849

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/508 (73%), Positives = 403/508 (79%), Gaps = 24/508 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK VAE +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 996  VTGNDRISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGEIETRFQQAQAN 1055

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1056 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1115

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1116 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVN 1167

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1168 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1227

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1228 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1287

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 1288 DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1347

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1348 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1407

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 1408 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSM 1467

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAWYPIH 1445
            +GG A MF G  +TPS  P    W   H
Sbjct: 1468 LGG-AAMFIGGGSTPSMTPPMTPWVNCH 1494



 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/418 (78%), Positives = 355/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 530 REQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 589

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 590 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 649

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 650 NNWLLLEG----------------------------------------------HSIGIG 663

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 664 DTIADPQTYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 723

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 724 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 783

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 784 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 843

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 844 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKVFEKRFKFDWSNER 901



 Score =  287 bits (734), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 157/190 (82%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1335 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1394

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1395 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1454

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNALMSPGAAMTPGG 946
             GIEIP  L + M+GG A MF G  +TP SM+P MTPW    TP Y +     +AMTPGG
Sbjct: 1455 FGIEIPNSLGSSMLGG-AAMFIGGGSTP-SMTPPMTPWVNCHTPRYFSPPGHVSAMTPGG 1512

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1513 PSFSPSAASD 1522



 Score =  220 bits (561), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1139 LRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1198

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1199 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1230

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1231 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1262



 Score =  170 bits (431), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 109/170 (64%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 831 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKVFE 890

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER +R++F +DV++E+  S D I ELE                        
Sbjct: 891 KRFKFDWSNERYMRKVFTDDVIKEMTDSSDAIQELE------------------------ 926

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW+KL  DR+ LR IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 927 -----------GEWDKLVTDRDNLRTIFPNGDSKVVLPCNLQRMIWNVQK 965



 Score =  166 bits (421), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 755  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 814

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 815  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 856



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1350 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1409

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1410 DVLMDAAAHAETDPMRG 1426



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 204 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 253



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 488  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 530


>gi|324120538|dbj|BAJ78660.1| RNA polymerase II largest subunit [Euconocephalus varius]
          Length = 1640

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/503 (76%), Positives = 406/503 (80%), Gaps = 22/503 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D LS QANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GEIE RFQQAQ  
Sbjct: 1017 VAGDDHLSVQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIEARFQQAQCS 1076

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1136

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1137 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVN 1188

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1189 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1248

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQT
Sbjct: 1249 LVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQT 1308

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1309 DSKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAV 1368

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1369 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1428

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA-TGMM 1418
            TVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP++  G M
Sbjct: 1429 TVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDLLLDAEKCKAGIEIPMSVGGGM 1488

Query: 1419 GGPAGMFFGSAATPSSIPGPPAW 1441
             G  GMFFGSAATPS  P    W
Sbjct: 1489 MGGVGMFFGSAATPSMSPQMTPW 1511



 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/432 (80%), Positives = 364/432 (84%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLPIWDGKMPQP I+KPKPLWTGKQVFSLIIPGNVNM RTHSTHPDDED G
Sbjct: 551 KEQMMNILMFLPIWDGKMPQPAIMKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDDEDDG 610

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEVCG+FYGNIQTVV
Sbjct: 611 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGQFYGNIQTVV 670

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 671 NNWLLLEG----------------------------------------------HSIGIG 684

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 685 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 744

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 745 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 804

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 805 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 864

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDP+NER  
Sbjct: 865 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKFDPTNER-- 922

Query: 492 LRNVSSLRRVVN 503
                 LRRV N
Sbjct: 923 -----HLRRVFN 929



 Score =  290 bits (741), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 172/317 (54%), Positives = 208/317 (65%), Gaps = 30/317 (9%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S D   + E+E VD        R    ++L ++   G  
Sbjct: 1237 LNCIFNDDNAEKLVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQG-- 1294

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVV----LPCNLMEVIFILQRW-----KLWGN 767
            I  + K +  L +     R + + +GE   +    L  +   ++ +L        + + N
Sbjct: 1295 IEAISKVYMHLPQTDSKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSN 1354

Query: 768  ENLRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 824
            +    +C+I  VL   +VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 1355 D----ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 1410

Query: 825  HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
            HGINRQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLD
Sbjct: 1411 HGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDLLLD 1470

Query: 885  AEKCKDGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSP----G 939
            AEKCK GIEIP++ G         F  +A   SMSPQMTPW Q STP+Y+++ SP    G
Sbjct: 1471 AEKCKAGIEIPMSVGGGMMGGVGMFFGSAATPSMSPQMTPWNQVSTPSYSSVWSPANMLG 1530

Query: 940  AAMTPGGPGFSPSVAGE 956
            + MTPGGP FSPS A +
Sbjct: 1531 SGMTPGGPSFSPSGASD 1547



 Score =  232 bits (591), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1160 LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1219

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1220 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1251

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K QDEE+ VDKMEDDMFLRCIE
Sbjct: 1252 RIRIMNSDDNKFQDEEETVDKMEDDMFLRCIE 1283



 Score =  209 bits (531), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/170 (60%), Positives = 121/170 (71%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 852 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFE 911

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRR+FNED+L+E+MGSGDVISELE+E                      
Sbjct: 912 KKFKFDPTNERHLRRVFNEDILKEMMGSGDVISELERE---------------------- 949

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE+LC+DREALR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 950 -------------WEQLCKDREALRQIFPSGESKVVLPCNLQRMIWNVQK 986



 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 776  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 835

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 836  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 877



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1371 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1431 DVLMDAASHAEVDPMRG 1447



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/50 (80%), Positives = 45/50 (90%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARPDWM+VTVLPVPPLSVRPAVVM+GSARNQ+ + + L
Sbjct: 225 EECFILGMDPKFARPDWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKL 274



 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/43 (93%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 509  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 551


>gi|308229944|gb|ADO24379.1| RNA polymerase II large subunit, partial [Drosophila angularis]
          Length = 1847

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/508 (72%), Positives = 403/508 (79%), Gaps = 24/508 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK VAE +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 996  VTGNDRISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGEIETRFQQAQAN 1055

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1056 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1115

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1116 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVN 1167

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1168 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1227

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1228 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1287

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 1288 DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1347

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            R+SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1348 RRSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1407

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 1408 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSM 1467

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAWYPIH 1445
            +GG A MF G  +TPS  P    W   H
Sbjct: 1468 LGG-AAMFIGGGSTPSMTPPMTPWVNCH 1494



 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/418 (78%), Positives = 355/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 530 REQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 589

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 590 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 649

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 650 NNWLLLEG----------------------------------------------HSIGIG 663

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 664 DTIADPQTYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 723

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 724 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 783

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 784 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 843

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD +NER
Sbjct: 844 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKVFEKRFKFDWTNER 901



 Score =  286 bits (732), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 144/190 (75%), Positives = 157/190 (82%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VR+SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1335 ICEIFQVLGIEAVRRSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1394

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1395 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1454

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNALMSPGAAMTPGG 946
             GIEIP  L + M+GG A MF G  +TP SM+P MTPW    TP Y +     +AMTPGG
Sbjct: 1455 FGIEIPNSLGSSMLGG-AAMFIGGGSTP-SMTPPMTPWVNCHTPRYFSPPGHVSAMTPGG 1512

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1513 PSFSPSAASD 1522



 Score =  220 bits (561), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1139 LRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1198

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1199 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1230

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1231 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1262



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 109/170 (64%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 831 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKVFE 890

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD +NER +R++F +DV++E+  S D I ELE                        
Sbjct: 891 KRFKFDWTNERYMRKVFTDDVIKEMTDSSDAIQELE------------------------ 926

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW+KL  DR+ LR IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 927 -----------GEWDKLVTDRDNLRTIFPNGDSKVVLPCNLQRMIWNVQK 965



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 755  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 814

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 815  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 856



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1350 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1409

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1410 DVLMDAAAHAETDPMRG 1426



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 204 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 253



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 488  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 530


>gi|324120514|dbj|BAJ78648.1| RNA polymerase II largest subunit [Nipponatelura sp. 66-1]
          Length = 1718

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/497 (77%), Positives = 405/497 (81%), Gaps = 22/497 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED LSKQAN+NATLLFQCLVRSTLCTK VAE +RLS+EAFEWL+GEIE RFQQAQV 
Sbjct: 996  VAGEDHLSKQANKNATLLFQCLVRSTLCTKCVAEEFRLSAEAFEWLIGEIETRFQQAQVQ 1055

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1056 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1115

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1116 --------LTGVAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVN 1167

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1168 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1227

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQT
Sbjct: 1228 LVLRIRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQT 1287

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1288 DSKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAV 1347

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1348 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1407

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI-PLATGMM 1418
            TVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTG FDLLLDAEKCK GIEI P A   M
Sbjct: 1408 TVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGAFDLLLDAEKCKHGIEIAPGAGAGM 1467

Query: 1419 GGPAGMFFGSAATPSSI 1435
             G AGMFFGSAATPSS+
Sbjct: 1468 MGGAGMFFGSAATPSSM 1484



 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/458 (76%), Positives = 374/458 (81%), Gaps = 56/458 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LM LPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 530 KEQMMNLLMHLPIWDGKMPQPTILKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDDG 589

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 590 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 649

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 650 NNWLLLEG----------------------------------------------HSIGIG 663

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAKEDVIEVI KAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 664 DTIADPQTYAEIQKAIKKAKEDVIEVIHKAHNMELEPTPGNTLRQTFENQVNRILNDARD 723

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 724 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 783

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 784 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 843

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE +++FDP+NER  
Sbjct: 844 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKRFKFDPTNER-- 901

Query: 492 LRNVSSLRRVVNSKPL--LIGCWKLTS-VEKEMNTVLQ 526
                 LRRV N   L  L+G  ++ S +EKE   +++
Sbjct: 902 -----YLRRVFNEDVLRELMGSGEVISELEKEWEQLVK 934



 Score =  290 bits (743), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 184/312 (58%), Positives = 213/312 (68%), Gaps = 29/312 (9%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S D   + E+E VD        R    ++L ++   G  
Sbjct: 1216 LNCIFNDDNAEKLVLRIRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQG-- 1273

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVVLP-------CNLMEVIF--ILQRWKLWGN 767
            I  + K +  L +     R + + +GE   +          +LM+V+    +   + + N
Sbjct: 1274 IEAISKVYMHLPQTDSKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSN 1333

Query: 768  ENLRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 824
            +    +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 1334 D----ICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 1389

Query: 825  HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
            HGINRQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTG FDLLLD
Sbjct: 1390 HGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGAFDLLLD 1449

Query: 885  AEKCKDGIEI-PLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSP--GA 940
            AEKCK GIEI P A   M G AGMFFGSAATPSSMSPQMTPW Q +TPAY +  SP  G+
Sbjct: 1450 AEKCKHGIEIAPGAGAGMMGGAGMFFGSAATPSSMSPQMTPWNQVATPAYGSGWSPGVGS 1509

Query: 941  AMTPGGPGFSPS 952
             MTPGGPGFSPS
Sbjct: 1510 GMTPGGPGFSPS 1521



 Score =  233 bits (594), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 117/152 (76%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1139 LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1198

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1199 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1230

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDDSK QDEE+ VDKMEDDMFLRCIE
Sbjct: 1231 RIRIMNSDDSKFQDEEEQVDKMEDDMFLRCIE 1262



 Score =  195 bits (496), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/170 (59%), Positives = 119/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 831 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFE 890

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FDP+NER LRR+FNEDVLRELMGSG+VISELEKE      W+Q             
Sbjct: 891 KRFKFDPTNERYLRRVFNEDVLRELMGSGEVISELEKE------WEQ------------- 931

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                           L +DREALR+IF SG++ VV PCNL  +I+ +Q+
Sbjct: 932 ----------------LVKDREALRQIFPSGDNKVVQPCNLQRMIWNVQK 965



 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 755  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 814

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 815  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 856



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1350 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1409

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1410 DVLMDAASHAEVDPMRG 1426



 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/43 (93%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 488  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 530



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARPDWM+ TVLPVPPL VRPAVVM+GSARNQ+ + + L
Sbjct: 204 EECFILGMDPKFARPDWMICTVLPVPPLPVRPAVVMYGSARNQDDLTHKL 253


>gi|194889556|ref|XP_001977109.1| RNA polymerase II 215kD subunit [Drosophila erecta]
 gi|190648758|gb|EDV46036.1| RNA polymerase II 215kD subunit [Drosophila erecta]
          Length = 1889

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/504 (73%), Positives = 402/504 (79%), Gaps = 24/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1015 VTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQAN 1074

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1134

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1135 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 1186

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1187 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1246

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1247 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1306

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 1307 DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1366

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1367 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1426

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 1427 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSM 1486

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            +GG A MF G  +TPS  P    W
Sbjct: 1487 LGG-AAMFIGGGSTPSMTPPMTPW 1509



 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/418 (78%), Positives = 355/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 REQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 669 NNWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 683 DTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 863 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKAFEKRFKFDWSNER 920



 Score =  290 bits (741), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 146/190 (76%), Positives = 159/190 (83%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1414 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1473

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAAMTPGG 946
             GIEIP  L + M+GG A MF G  +TP SM+P MTPWA  +TP Y +     +AMTPGG
Sbjct: 1474 FGIEIPNTLGSSMLGG-AAMFIGGGSTP-SMTPPMTPWANCNTPRYFSPPGHVSAMTPGG 1531

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1532 PSFSPSAASD 1541



 Score =  221 bits (562), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1218 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1249

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1281



 Score =  171 bits (432), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 86/170 (50%), Positives = 111/170 (65%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKAFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER +R++F +DV++E+  S + I ELE E                      
Sbjct: 910 KRFKFDWSNERYMRKVFTDDVIKEMTDSSEAIQELEAE---------------------- 947

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        W++L  DR++LR+IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 948 -------------WDRLVGDRDSLRQIFPNGDSKVVLPCNLQRMIWNVQK 984



 Score =  166 bits (421), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1369 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1429 DVLMDAAAHAETDPMRG 1445



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 223 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 272



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 507  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549


>gi|324120574|dbj|BAJ78678.1| RNA polymerase II largest subunit [Protohermes grandis]
          Length = 1633

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/511 (74%), Positives = 405/511 (79%), Gaps = 30/511 (5%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED+LSKQANENATLLFQCLVRSTLCTK V+E++RLSSEAFEWL+GEIE RFQQAQ  
Sbjct: 1016 VAGEDRLSKQANENATLLFQCLVRSTLCTKCVSEDFRLSSEAFEWLIGEIETRFQQAQCA 1075

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1076 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1135

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVIPEDQEFVN
Sbjct: 1136 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVN 1187

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1188 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1247

Query: 1180 LVLRIRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMH 1235
            LVLRIRIMNSDD K         + VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMH
Sbjct: 1248 LVLRIRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMH 1307

Query: 1236 LPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1295
            LPQTDSKKR++ITESGEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLG
Sbjct: 1308 LPQTDSKKRMVITESGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLG 1367

Query: 1296 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1355
            IEAVRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC
Sbjct: 1368 IEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1427

Query: 1356 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL-- 1413
            SFEETVDV+MDAA+HAE DPMRGVSENIIMGQL RMGTGCFDLLLDAEKCK GIE+P+  
Sbjct: 1428 SFEETVDVIMDAASHAEVDPMRGVSENIIMGQLARMGTGCFDLLLDAEKCKAGIELPMAG 1487

Query: 1414 ATGMM---GGPAGMFFGSAATPSSIPGPPAW 1441
            A G++   GG  GMFFGSAATPS  P    W
Sbjct: 1488 AAGLVPGAGGTGGMFFGSAATPSMSPRMTPW 1518



 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/418 (80%), Positives = 356/418 (85%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVN+ RTHSTHPDDED G
Sbjct: 549 KEQMMNILMFLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNLIRTHSTHPDDEDEG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LG S+GSLLHICFLELGHEVCGRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGELIMGILCKKTLGASAGSLLHICFLELGHEVCGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLLLEG                                              HSIGIG
Sbjct: 669 NTWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY+EIQ AI+KAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 683 DTIADPQTYMEIQRAIRKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS++ FE K++FD +NER
Sbjct: 863 VMVNYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTIKLSNRIFERKFKFDSTNER 920



 Score =  292 bits (748), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/201 (75%), Positives = 164/201 (81%), Gaps = 18/201 (8%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1359 ICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1418

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDV+MDAA+HAE DPMRGVSENIIMGQL RMGTGCFDLLLDAEKCK
Sbjct: 1419 QDTGALMRCSFEETVDVIMDAASHAEVDPMRGVSENIIMGQLARMGTGCFDLLLDAEKCK 1478

Query: 890  DGIEIPL--ATGMM---GGPAGMFFGSAATPSSMSPQMTPW-AQSTPAY-NALMSP---- 938
             GIE+P+  A G++   GG  GMFFGSAATP SMSP+MTPW A  TP Y  +  SP    
Sbjct: 1479 AGIELPMAGAAGLVPGAGGTGGMFFGSAATP-SMSPRMTPWSAGVTPGYGGSAWSPASAG 1537

Query: 939  ---GAAMTPGGPGFSPSVAGE 956
               G+ MTPGGP FSPS A +
Sbjct: 1538 GYLGSGMTPGGPNFSPSTASD 1558



 Score =  211 bits (538), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 111/156 (71%), Positives = 114/156 (73%), Gaps = 32/156 (20%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1159 LRKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1218

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1219 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1250

Query: 1649 RIRIMNS----DDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNS          D ++ VDKMEDDMFLRCIE
Sbjct: 1251 RIRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIE 1286



 Score =  177 bits (450), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 116/171 (67%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS++ FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTIKLSNRIFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMG-SGDVISELEKEMVDHFSWKQLRRIFNEDVLRE 710
            K++FD +NER LRRIF EDV+++LMG SGDVI ELE+E      W+Q            
Sbjct: 910 RKFKFDSTNERYLRRIFTEDVVKQLMGSSGDVIQELERE------WEQ------------ 951

Query: 711 LMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                            L +DREALR IF SG++ VVLPCNL  +I+ +Q+
Sbjct: 952 -----------------LVKDREALRSIFPSGDNKVVLPCNLQRMIWNVQK 985



 Score =  168 bits (426), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1374 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1433

Query: 576  DVLMDAAAHAEADPMRG 592
            DV+MDAA+HAE DPMRG
Sbjct: 1434 DVIMDAASHAEVDPMRG 1450



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VEN+H+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 507  VENLHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 549



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 52/67 (77%), Gaps = 1/67 (1%)

Query: 14  VSNTSVYAWYVVPY-PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQ 72
           +S T+   W ++ +   EE  ILGMDPKFARPDWM++TVLPVPPL VRPAVVM+GSA+NQ
Sbjct: 206 ISLTAERVWEILKHISDEECFILGMDPKFARPDWMIITVLPVPPLPVRPAVVMYGSAKNQ 265

Query: 73  EQMMNIL 79
           + + + L
Sbjct: 266 DDLTHKL 272


>gi|17530899|ref|NP_511124.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
 gi|14286163|sp|P04052.4|RPB1_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
            polymerase II subunit B1; AltName: Full=DNA-directed RNA
            polymerase III largest subunit
 gi|7292659|gb|AAF48057.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
 gi|269954742|gb|ACZ54678.1| FI12846p [Drosophila melanogaster]
          Length = 1887

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/504 (73%), Positives = 401/504 (79%), Gaps = 24/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWLVGEIE RFQQAQ  
Sbjct: 1015 VTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQAN 1074

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1134

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1135 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 1186

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1187 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1246

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1247 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1306

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 1307 DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1366

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1367 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1426

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L   M
Sbjct: 1427 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSM 1486

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            +GG A MF G  +TPS  P    W
Sbjct: 1487 LGG-AAMFIGGGSTPSMTPPMTPW 1509



 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/418 (78%), Positives = 353/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WD KMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 REQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDEG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKKSLGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 669 NNWLLFEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 683 DTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 863 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNER 920



 Score =  289 bits (740), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 146/190 (76%), Positives = 158/190 (83%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1414 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1473

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAAMTPGG 946
             GIEIP  L   M+GG A MF G  +TP SM+P MTPWA  +TP Y +     +AMTPGG
Sbjct: 1474 FGIEIPNTLGNSMLGG-AAMFIGGGSTP-SMTPPMTPWANCNTPRYFSPPGHVSAMTPGG 1531

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1532 PSFSPSAASD 1541



 Score =  221 bits (562), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1218 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1249

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1281



 Score =  171 bits (433), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/170 (50%), Positives = 111/170 (65%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER ++++F +DV++E+  S + I ELE                        
Sbjct: 910 KRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELE------------------------ 945

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW++L  DR++LR+IF +GES VVLPCNL  +I+ +Q+
Sbjct: 946 -----------AEWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQK 984



 Score =  166 bits (421), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1369 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1429 DVLMDAAAHAETDPMRG 1445



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 223 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 272



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 507  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549


>gi|162951789|gb|ABY21756.1| RE30267p [Drosophila melanogaster]
          Length = 1887

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/504 (73%), Positives = 401/504 (79%), Gaps = 24/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWLVGEIE RFQQAQ  
Sbjct: 1015 VTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQAN 1074

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1134

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1135 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 1186

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1187 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1246

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1247 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1306

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 1307 DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1366

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1367 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1426

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L   M
Sbjct: 1427 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSM 1486

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            +GG A MF G  +TPS  P    W
Sbjct: 1487 LGG-AAMFIGGGSTPSMTPPMTPW 1509



 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/418 (78%), Positives = 353/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WD KMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 REQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDEG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKKSLGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 669 NNWLLFEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 683 DTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 863 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNER 920



 Score =  289 bits (740), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 146/190 (76%), Positives = 158/190 (83%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1414 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1473

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAAMTPGG 946
             GIEIP  L   M+GG A MF G  +TP SM+P MTPWA  +TP Y +     +AMTPGG
Sbjct: 1474 FGIEIPNTLGNSMLGG-AAMFIGGGSTP-SMTPPMTPWANCNTPRYFSPPGHVSAMTPGG 1531

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1532 PSFSPSAASD 1541



 Score =  221 bits (562), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1218 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1249

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1281



 Score =  171 bits (433), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/170 (50%), Positives = 111/170 (65%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER ++++F +DV++E+  S + I ELE                        
Sbjct: 910 KRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELE------------------------ 945

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW++L  DR++LR+IF +GES VVLPCNL  +I+ +Q+
Sbjct: 946 -----------AEWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQK 984



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1369 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1429 DVLMDAAAHAETDPMRG 1445



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 223 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 272



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 507  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549


>gi|195479340|ref|XP_002100852.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
 gi|194188376|gb|EDX01960.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
          Length = 1889

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/504 (73%), Positives = 402/504 (79%), Gaps = 24/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1015 VTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQAN 1074

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1134

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1135 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 1186

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1187 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1246

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1247 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1306

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 1307 DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1366

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1367 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1426

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 1427 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSM 1486

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            +GG A MF G  +TPS  P    W
Sbjct: 1487 LGG-AAMFIGGGSTPSMTPPMTPW 1509



 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/418 (78%), Positives = 355/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 REQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 669 NNWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 683 DTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 863 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKAFEKRFKFDWSNER 920



 Score =  288 bits (737), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 158/190 (83%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1414 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1473

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAAMTPGG 946
             GIEIP  L + M+GG A MF G  +TP SM+P MTPW   +TP Y +     +AMTPGG
Sbjct: 1474 FGIEIPNTLGSSMLGG-AAMFIGGGSTP-SMTPPMTPWVNCNTPRYFSPPGHVSAMTPGG 1531

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1532 PSFSPSAASD 1541



 Score =  220 bits (561), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1218 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1249

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1281



 Score =  170 bits (431), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 86/170 (50%), Positives = 111/170 (65%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKAFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER +R++F +DV++E+  S + I ELE E                      
Sbjct: 910 KRFKFDWSNERYMRKVFTDDVIKEMTDSSEAIQELEAE---------------------- 947

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        W++L  DR++LR+IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 948 -------------WDRLVGDRDSLRQIFPNGDSKVVLPCNLQRMIWNVQK 984



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1369 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1429 DVLMDAAAHAETDPMRG 1445



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 223 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 272



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 507  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549


>gi|195355215|ref|XP_002044088.1| GM13065 [Drosophila sechellia]
 gi|194129357|gb|EDW51400.1| GM13065 [Drosophila sechellia]
          Length = 1887

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/519 (71%), Positives = 405/519 (78%), Gaps = 54/519 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWLVGEIE RFQQAQ  
Sbjct: 1015 VTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQAN 1074

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPR--LKEIINISKKPKA---- 1128

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                     PS   F        L   A + AE   NVL       L +VTANTAIYYDP
Sbjct: 1129 ---------PSLTVF--------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 1171

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GF
Sbjct: 1172 DPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGF 1231

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            G+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ
Sbjct: 1232 GEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQ 1291

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIEAIGKVYMHLPQTDSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT S
Sbjct: 1292 GIEAIGKVYMHLPQTDSKKRIVITENGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSS 1351

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIFQVLGIEAVRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 1352 NDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1411

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEK
Sbjct: 1412 NRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEK 1471

Query: 1405 CKDGIEIP--LATGMMGGPAGMFFGSAATPSSIPGPPAW 1441
            C+ GIEIP  L   M+GG A MF G  +TPS  P    W
Sbjct: 1472 CRFGIEIPNTLGNSMLGG-AAMFIGGGSTPSMTPPMTPW 1509



 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/418 (78%), Positives = 353/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WD KMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 REQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDEG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKKSLGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 669 NNWLLFEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 683 DTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 863 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNER 920



 Score =  288 bits (736), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 157/190 (82%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1414 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1473

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAAMTPGG 946
             GIEIP  L   M+GG A MF G  +TP SM+P MTPW   +TP Y +     +AMTPGG
Sbjct: 1474 FGIEIPNTLGNSMLGG-AAMFIGGGSTP-SMTPPMTPWVNCNTPRYFSPPGHVSAMTPGG 1531

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1532 PSFSPSAASD 1541



 Score =  221 bits (562), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1218 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1249

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1281



 Score =  171 bits (433), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/170 (50%), Positives = 111/170 (65%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER ++++F +DV++E+  S + I ELE                        
Sbjct: 910 KRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELE------------------------ 945

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW++L  DR++LR+IF +GES VVLPCNL  +I+ +Q+
Sbjct: 946 -----------AEWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQK 984



 Score =  166 bits (421), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1369 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1429 DVLMDAAAHAETDPMRG 1445



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 223 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 272



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 507  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549


>gi|195133818|ref|XP_002011336.1| GI16472 [Drosophila mojavensis]
 gi|193907311|gb|EDW06178.1| GI16472 [Drosophila mojavensis]
          Length = 1889

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/508 (72%), Positives = 403/508 (79%), Gaps = 24/508 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1015 VTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQAN 1074

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1134

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1135 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVN 1186

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1187 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1246

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1247 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1306

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 1307 DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1366

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1367 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1426

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 1427 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSM 1486

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAWYPIH 1445
            +GG A +F G  +TPS  P    W   H
Sbjct: 1487 LGG-AAIFMGGGSTPSMTPPMTPWVNCH 1513



 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/418 (78%), Positives = 356/418 (85%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 REQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 669 NNWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQMAIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 683 DTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 863 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKVFEKRFKFDWSNER 920



 Score =  286 bits (732), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 144/190 (75%), Positives = 157/190 (82%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1414 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1473

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNALMSPGAAMTPGG 946
             GIEIP  L + M+GG A +F G  +TP SM+P MTPW    TP Y +     +AMTPGG
Sbjct: 1474 FGIEIPNSLGSSMLGG-AAIFMGGGSTP-SMTPPMTPWVNCHTPRYFSPSGHVSAMTPGG 1531

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1532 PSFSPSAASD 1541



 Score =  220 bits (561), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1218 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1249

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1281



 Score =  170 bits (431), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 109/170 (64%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKVFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER +R++F +DV++E+  S D I ELE                        
Sbjct: 910 KRFKFDWSNERYMRKVFTDDVIKEMTDSSDAIQELE------------------------ 945

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW++L  DR+ LR IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 946 -----------SEWDRLVSDRDNLRTIFPNGDSKVVLPCNLQRMIWNVQK 984



 Score =  166 bits (421), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1369 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1429 DVLMDAAAHAETDPMRG 1445



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 223 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 272



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 507  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549


>gi|78183107|gb|ABB29549.1| putative RNA polymerase II 215 kD subunit [Drosophila simulans]
          Length = 746

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/519 (71%), Positives = 405/519 (78%), Gaps = 54/519 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWLVGEIE RFQQAQ  
Sbjct: 157  VTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQAN 216

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 217  PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPR--LKEIINISKKPKA---- 270

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                     PS   F   G        A + AE   NVL       L +VTANTAIYYDP
Sbjct: 271  ---------PSLTVFLTGG--------AARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 313

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GF
Sbjct: 314  DPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGF 373

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            G+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ
Sbjct: 374  GEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQ 433

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIEAIGKVYMHLPQTDSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT S
Sbjct: 434  GIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSS 493

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIFQVLGIEAVRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 494  NDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 553

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEK
Sbjct: 554  NRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEK 613

Query: 1405 CKDGIEIP--LATGMMGGPAGMFFGSAATPSSIPGPPAW 1441
            C+ GIEIP  L   M+GG A MF G  +TPS  P    W
Sbjct: 614  CRFGIEIPNTLGNSMLGG-AAMFIGGGSTPSMTPPMTPW 651



 Score =  288 bits (738), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 157/190 (82%), Gaps = 8/190 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 496 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 555

Query: 830 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
           QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 556 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 615

Query: 890 DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAAMTPGG 946
            GIEIP  L   M+GG A MF G  +TP SM+P MTPW   +TP Y +     +AMTPGG
Sbjct: 616 FGIEIPNTLGNSMLGG-AAMFIGGGSTP-SMTPPMTPWVNCNTPRYFSPPGHVSAMTPGG 673

Query: 947 PGFSPSVAGE 956
           P FSPS A +
Sbjct: 674 PSFSPSAASD 683



 Score =  220 bits (561), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 300  LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 359

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 360  LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 391

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 392  RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 423



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
           SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 511 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 570

Query: 576 DVLMDAAAHAEADPMRG 592
           DVLMDAAAHAE DPMRG
Sbjct: 571 DVLMDAAAHAETDPMRG 587



 Score =  151 bits (382), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 102/161 (63%), Gaps = 35/161 (21%)

Query: 601 AMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSN 660
           AMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SN
Sbjct: 1   AMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSN 60

Query: 661 ERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISE 720
           ER ++++F +DV++E+  S + I ELE                                 
Sbjct: 61  ERLMKKVFTDDVIKEMTDSSEAIQELE--------------------------------- 87

Query: 721 LEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
              EW++L  DR++LR+IF +GES VVLPCNL  +I+ +Q+
Sbjct: 88  --AEWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQK 126



 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 53/62 (85%)

Query: 428 AMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSN 487
           AMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SN
Sbjct: 1   AMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSN 60

Query: 488 ER 489
           ER
Sbjct: 61  ER 62


>gi|4808162|emb|CAB42796.1| largest subunit of the RNA polymerase II complex [Drosophila
            madeirensis]
          Length = 1889

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/504 (73%), Positives = 402/504 (79%), Gaps = 24/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1015 VTGADRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQAN 1074

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1134

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1135 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 1186

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1187 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1246

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1247 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1306

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDPVRT SNDICEIFQVLGIEAV
Sbjct: 1307 DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGIEAV 1366

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1367 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1426

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 1427 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSM 1486

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            +GG A MF G  +TPS  P    W
Sbjct: 1487 LGGTA-MFIGGGSTPSMTPPMTPW 1509



 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/418 (79%), Positives = 356/418 (85%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 REQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHE+ GRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELGHEIAGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 669 NNWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQMAIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 683 DTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 863 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKAFEKRFKFDWSNER 920



 Score =  287 bits (734), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 158/190 (83%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1414 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1473

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAAMTPGG 946
             GIEIP  L + M+GG A MF G  +TP SM+P MTPW   +TP Y +     +AMTPGG
Sbjct: 1474 FGIEIPNTLGSSMLGGTA-MFIGGGSTP-SMTPPMTPWVNCNTPRYFSPPGHVSAMTPGG 1531

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1532 PSFSPSAASD 1541



 Score =  221 bits (562), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1218 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1249

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1281



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875



 Score =  164 bits (415), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 108/170 (63%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKAFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER +R++F ++V++E+  S + I +LE                        
Sbjct: 910 KRFKFDWSNERYMRKVFTDEVIKEITDSSEAIQDLE------------------------ 945

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW+ L  DR+ LR IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 946 -----------SEWDNLMHDRDNLRVIFPNGDSKVVLPCNLQRMIWNVQK 984



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1369 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1429 DVLMDAAAHAETDPMRG 1445



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 223 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 272



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 507  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549


>gi|9587179|gb|AAF89193.1|AF272643_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587181|gb|AAF89194.1|AF272644_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587183|gb|AAF89195.1|AF272645_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587185|gb|AAF89196.1|AF272646_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587187|gb|AAF89197.1|AF272647_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587189|gb|AAF89198.1|AF272648_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587191|gb|AAF89199.1|AF272649_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587193|gb|AAF89200.1|AF272650_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587195|gb|AAF89201.1|AF272651_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587197|gb|AAF89202.1|AF272652_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587199|gb|AAF89203.1|AF272653_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|4808177|emb|CAB42800.1| largest subunit of the RNA polymerase II complex [Drosophila
            subobscura]
          Length = 1889

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/519 (71%), Positives = 406/519 (78%), Gaps = 54/519 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1015 VTGADRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQAN 1074

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPR--LKEIINISKKPKA---- 1128

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                     PS   F        L   A + AE   NVL       L +VTANTAIYYDP
Sbjct: 1129 ---------PSLTVF--------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 1171

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GF
Sbjct: 1172 DPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGF 1231

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            G+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ
Sbjct: 1232 GEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQ 1291

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIEAIGKVYMHLPQTDSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDPVRT S
Sbjct: 1292 GIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPVRTSS 1351

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIFQVLGIEAVRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 1352 NDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1411

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEK
Sbjct: 1412 NRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEK 1471

Query: 1405 CKDGIEIP--LATGMMGGPAGMFFGSAATPSSIPGPPAW 1441
            C+ GIEIP  L + M+GG A MF G  +TPS  P    W
Sbjct: 1472 CRFGIEIPNTLGSSMLGGTA-MFIGGGSTPSMTPPMTPW 1509



 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/418 (79%), Positives = 356/418 (85%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 REQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHE+ GRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELGHEIAGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 669 NNWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQMAIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 683 DTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 863 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKAFEKRFKFDWSNER 920



 Score =  287 bits (734), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 158/190 (83%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1414 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1473

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAAMTPGG 946
             GIEIP  L + M+GG A MF G  +TP SM+P MTPW   +TP Y +     +AMTPGG
Sbjct: 1474 FGIEIPNTLGSSMLGGTA-MFIGGGSTP-SMTPPMTPWVNCNTPRYFSPPGHVSAMTPGG 1531

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1532 PSFSPSAASD 1541



 Score =  221 bits (562), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1218 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1249

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1281



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875



 Score =  164 bits (415), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 108/170 (63%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKAFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER +R++F ++V++E+  S + I +LE                        
Sbjct: 910 KRFKFDWSNERYMRKVFTDEVIKEMTDSSEAIQDLE------------------------ 945

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW+ L  DR+ LR IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 946 -----------SEWDHLMHDRDNLRVIFPNGDSKVVLPCNLQRMIWNVQK 984



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1369 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1429 DVLMDAAAHAETDPMRG 1445



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 223 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 272



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 507  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549


>gi|78183103|gb|ABB29547.1| putative RNA polymerase II 215 kD subunit [Drosophila erecta]
          Length = 760

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/519 (71%), Positives = 406/519 (78%), Gaps = 54/519 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 157  VTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQAN 216

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 217  PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPR--LKEIINISKKPKA---- 270

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                     PS   F   G        A + AE   NVL       L +VTANTAIYYDP
Sbjct: 271  ---------PSLTVFLTGG--------AARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 313

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GF
Sbjct: 314  DPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGF 373

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            G+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ
Sbjct: 374  GEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQ 433

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIEAIGKVYMHLPQTDSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT S
Sbjct: 434  GIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSS 493

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIFQVLGIEAVRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 494  NDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 553

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEK
Sbjct: 554  NRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEK 613

Query: 1405 CKDGIEIP--LATGMMGGPAGMFFGSAATPSSIPGPPAW 1441
            C+ GIEIP  L + M+GG A MF G  +TPS  P    W
Sbjct: 614  CRFGIEIPNTLGSSMLGG-AAMFIGGGSTPSMTPPMTPW 651



 Score =  290 bits (743), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 146/190 (76%), Positives = 159/190 (83%), Gaps = 8/190 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 496 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 555

Query: 830 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
           QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 556 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 615

Query: 890 DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAAMTPGG 946
            GIEIP  L + M+GG A MF G  +TP SM+P MTPWA  +TP Y +     +AMTPGG
Sbjct: 616 FGIEIPNTLGSSMLGG-AAMFIGGGSTP-SMTPPMTPWANCNTPRYFSPPGHVSAMTPGG 673

Query: 947 PGFSPSVAGE 956
           P FSPS A +
Sbjct: 674 PSFSPSAASD 683



 Score =  220 bits (561), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 300  LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 359

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 360  LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 391

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 392  RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 423



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
           SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 511 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 570

Query: 576 DVLMDAAAHAEADPMRG 592
           DVLMDAAAHAE DPMRG
Sbjct: 571 DVLMDAAAHAETDPMRG 587



 Score =  151 bits (381), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 102/161 (63%), Gaps = 35/161 (21%)

Query: 601 AMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSN 660
           AMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SN
Sbjct: 1   AMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKAFEKRFKFDWSN 60

Query: 661 ERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISE 720
           ER +R++F +DV++E+  S + I ELE E                               
Sbjct: 61  ERYMRKVFTDDVIKEMTDSSEAIQELEAE------------------------------- 89

Query: 721 LEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
               W++L  DR++LR+IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 90  ----WDRLVGDRDSLRQIFPNGDSKVVLPCNLQRMIWNVQK 126



 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 53/62 (85%)

Query: 428 AMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSN 487
           AMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SN
Sbjct: 1   AMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKAFEKRFKFDWSN 60

Query: 488 ER 489
           ER
Sbjct: 61  ER 62


>gi|195399163|ref|XP_002058190.1| GJ15949 [Drosophila virilis]
 gi|194150614|gb|EDW66298.1| GJ15949 [Drosophila virilis]
          Length = 1889

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/508 (72%), Positives = 403/508 (79%), Gaps = 24/508 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1015 VTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQAN 1074

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1134

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1135 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVN 1186

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1187 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1246

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1247 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1306

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 1307 DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1366

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1367 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1426

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 1427 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSM 1486

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAWYPIH 1445
            +GG A +F G  +TPS  P    W   H
Sbjct: 1487 LGG-AAIFMGGGSTPSMTPPMTPWVNCH 1513



 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/418 (78%), Positives = 354/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM R H THPD+ED G
Sbjct: 549 REQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRAHETHPDEEDDG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 669 NNWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQMAIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 683 DTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 863 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQHMPTVKLSNKVFEKRFKFDWSNER 920



 Score =  285 bits (728), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 143/190 (75%), Positives = 156/190 (82%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1414 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1473

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNALMSPGAAMTPGG 946
             GIEIP  L + M+GG A +F G  +TP SM+P MTPW    TP Y +     + MTPGG
Sbjct: 1474 FGIEIPNSLGSSMLGG-AAIFMGGGSTP-SMTPPMTPWVNCHTPRYFSPSGHVSGMTPGG 1531

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1532 PSFSPSAASD 1541



 Score =  220 bits (561), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1218 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1249

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1281



 Score =  171 bits (434), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 109/170 (64%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQHMPTVKLSNKVFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER +RR+F +DV++E+  S D I ELE                        
Sbjct: 910 KRFKFDWSNERYMRRVFTDDVIKEMTDSSDAIQELE------------------------ 945

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW++L  DR+ LR IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 946 -----------SEWDRLVSDRDNLRTIFPNGDSKVVLPCNLQRMIWNVQK 984



 Score =  166 bits (421), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1369 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1429 DVLMDAAAHAETDPMRG 1445



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 223 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 272



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 507  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549


>gi|308229942|gb|ADO24378.1| RNA polymerase II large subunit, partial [Drosophila acutilabella]
          Length = 1845

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/508 (72%), Positives = 403/508 (79%), Gaps = 24/508 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK VAE +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 996  VTGNDRISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGEIETRFQQAQAN 1055

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1056 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1115

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1116 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVN 1167

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1168 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1227

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1228 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1287

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+IT++GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 1288 DSKKRIVITDTGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1347

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1348 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1407

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 1408 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSM 1467

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAWYPIH 1445
            +GG A MF G  +TPS  P    W   H
Sbjct: 1468 LGGTA-MFIGGGSTPSMTPPMTPWVNCH 1494



 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/418 (78%), Positives = 355/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 530 REQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 589

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 590 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 649

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 650 NNWLLLEG----------------------------------------------HSIGIG 663

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 664 DTIADPQTYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 723

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 724 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 783

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 784 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 843

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD +NER
Sbjct: 844 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKVFEKRFKFDWTNER 901



 Score =  286 bits (732), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 157/190 (82%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1335 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1394

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1395 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1454

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNALMSPGAAMTPGG 946
             GIEIP  L + M+GG A MF G  +TP SM+P MTPW    TP Y +     +AMTPGG
Sbjct: 1455 FGIEIPNSLGSSMLGGTA-MFIGGGSTP-SMTPPMTPWVNCHTPRYFSPPGHVSAMTPGG 1512

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1513 PSFSPSAASD 1522



 Score =  220 bits (561), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1139 LRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1198

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1199 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1230

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1231 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1262



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 109/170 (64%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 831 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKVFE 890

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD +NER +R++F +DV++E+  S D I ELE                        
Sbjct: 891 KRFKFDWTNERYMRKVFTDDVIKEMTDSSDAIQELE------------------------ 926

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW+KL  DR+ LR IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 927 -----------SEWDKLVTDRDNLRTIFPNGDSKVVLPCNLQRMIWNVQK 965



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 755  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 814

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 815  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 856



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1350 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1409

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1410 DVLMDAAAHAETDPMRG 1426



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 204 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 253



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 488  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 530


>gi|78183111|gb|ABB29551.1| putative RNA polymerase II 215 kD subunit [Drosophila yakuba]
          Length = 766

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/504 (73%), Positives = 402/504 (79%), Gaps = 24/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 157  VTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQAN 216

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 217  PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 276

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
               G        A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 277  LTGG--------AARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 328

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 329  VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 388

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 389  LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 448

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 449  DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 508

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 509  RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 568

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 569  TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSM 628

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            +GG A MF G  +TPS  P    W
Sbjct: 629  LGG-AAMFIGGGSTPSMTPPMTPW 651



 Score =  288 bits (738), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 158/190 (83%), Gaps = 8/190 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 496 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 555

Query: 830 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
           QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 556 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 615

Query: 890 DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAAMTPGG 946
            GIEIP  L + M+GG A MF G  +TP SM+P MTPW   +TP Y +     +AMTPGG
Sbjct: 616 FGIEIPNTLGSSMLGG-AAMFIGGGSTP-SMTPPMTPWVNCNTPRYFSPPGHVSAMTPGG 673

Query: 947 PGFSPSVAGE 956
           P FSPS A +
Sbjct: 674 PSFSPSAASD 683



 Score =  220 bits (561), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 300  LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 359

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 360  LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 391

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 392  RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 423



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
           SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 511 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 570

Query: 576 DVLMDAAAHAEADPMRG 592
           DVLMDAAAHAE DPMRG
Sbjct: 571 DVLMDAAAHAETDPMRG 587



 Score =  151 bits (381), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 102/161 (63%), Gaps = 35/161 (21%)

Query: 601 AMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSN 660
           AMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SN
Sbjct: 1   AMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKAFEKRFKFDWSN 60

Query: 661 ERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISE 720
           ER +R++F +DV++E+  S + I ELE E                               
Sbjct: 61  ERYMRKVFTDDVIKEMTDSSEAIQELEAE------------------------------- 89

Query: 721 LEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
               W++L  DR++LR+IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 90  ----WDRLVGDRDSLRQIFPNGDSKVVLPCNLQRMIWNVQK 126



 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 53/62 (85%)

Query: 428 AMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSN 487
           AMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SN
Sbjct: 1   AMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKAFEKRFKFDWSN 60

Query: 488 ER 489
           ER
Sbjct: 61  ER 62


>gi|308229948|gb|ADO24381.1| RNA polymerase II large subunit, partial [Drosophila cardini]
          Length = 1870

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/508 (72%), Positives = 403/508 (79%), Gaps = 24/508 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK VAE +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1008 VTGNDRISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGEIETRFQQAQAN 1067

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1068 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1127

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1128 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVN 1179

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1180 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1239

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1240 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1299

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+IT++GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 1300 DSKKRIVITDTGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1359

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1360 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1419

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 1420 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSM 1479

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAWYPIH 1445
            +GG A MF G  +TPS  P    W   H
Sbjct: 1480 LGGTA-MFIGGGSTPSMTPPMTPWVNCH 1506



 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/418 (78%), Positives = 355/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 542 REQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 601

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 602 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 661

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 662 NNWLLLEG----------------------------------------------HSIGIG 675

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 676 DTIADPQTYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 735

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 736 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 795

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 796 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 855

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD +NER
Sbjct: 856 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKVFEKRFKFDWTNER 913



 Score =  286 bits (732), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 157/190 (82%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1347 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1406

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1407 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1466

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNALMSPGAAMTPGG 946
             GIEIP  L + M+GG A MF G  +TP SM+P MTPW    TP Y +     +AMTPGG
Sbjct: 1467 FGIEIPNSLGSSMLGGTA-MFIGGGSTP-SMTPPMTPWVNCHTPRYFSPPGHVSAMTPGG 1524

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1525 PSFSPSAASD 1534



 Score =  220 bits (561), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1151 LRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1210

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1211 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1242

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1243 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1274



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 109/170 (64%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 843 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKVFE 902

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD +NER +R++F +DV++E+  S D I ELE                        
Sbjct: 903 KRFKFDWTNERYMRKVFTDDVIKEMTDSSDAIQELE------------------------ 938

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW+KL  DR+ LR IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 939 -----------SEWDKLVTDRDNLRTIFPNGDSKVVLPCNLQRMIWNVQK 977



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 767  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 826

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 827  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 868



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1362 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1421

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1422 DVLMDAAAHAETDPMRG 1438



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 216 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 265



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 500  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 542


>gi|158332|gb|AAA28868.1| RNA polymerase II [Drosophila melanogaster]
          Length = 1896

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/514 (71%), Positives = 404/514 (78%), Gaps = 54/514 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWLVGEIE RFQQAQ  
Sbjct: 1015 VTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQAN 1074

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPR--LKEIINISKKPKA---- 1128

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                     PS   F        L   A + AE   NVL       L +VTANTAIYYDP
Sbjct: 1129 ---------PSLTVF--------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 1171

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GF
Sbjct: 1172 DPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGF 1231

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            G+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ
Sbjct: 1232 GEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQ 1291

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIEAIGKVYMHLPQTDSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT S
Sbjct: 1292 GIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSS 1351

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIFQVLGIEAVRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 1352 NDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1411

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEK
Sbjct: 1412 NRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEK 1471

Query: 1405 CKDGIEIP--LATGMMGGPAGMFFGSAATPSSIP 1436
            C+ GIEIP  L   M+GG A MF G  +TPS  P
Sbjct: 1472 CRFGIEIPNTLGNSMLGG-AAMFIGGGSTPSMTP 1504



 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/418 (78%), Positives = 352/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WD KMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 REQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDEG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKKSLGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 669 NNWLLFEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDA D
Sbjct: 683 DTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDAHD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 863 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNER 920



 Score =  280 bits (717), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 142/191 (74%), Positives = 156/191 (81%), Gaps = 8/191 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1414 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1473

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQM-TPWAQ-STPAYNALMSPGAAMTPG 945
             GIEIP  L   M+GG A MF G  +TPS   P++ + WA  +TP Y +     +AMTPG
Sbjct: 1474 FGIEIPNTLGNSMLGG-AAMFIGGGSTPSMTPPELDSAWANCNTPRYFSPPGHVSAMTPG 1532

Query: 946  GPGFSPSVAGE 956
            GP FSPS A +
Sbjct: 1533 GPSFSPSAASD 1543



 Score =  221 bits (562), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1218 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1249

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1281



 Score =  171 bits (432), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/170 (50%), Positives = 111/170 (65%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER ++++F +DV++E+  S + I ELE                        
Sbjct: 910 KRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELE------------------------ 945

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW++L  DR++LR+IF +GES VVLPCNL  +I+ +Q+
Sbjct: 946 -----------AEWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQK 984



 Score =  166 bits (421), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1369 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1429 DVLMDAAAHAETDPMRG 1445



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 223 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 272



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 507  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549


>gi|324120534|dbj|BAJ78658.1| RNA polymerase II largest subunit [Karoophasma biedouwense]
          Length = 1907

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/503 (75%), Positives = 403/503 (80%), Gaps = 22/503 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D LS+QAN NATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GEIE RFQQAQ  
Sbjct: 1017 VAGDDHLSRQANANATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQCS 1076

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1136

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1137 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVN 1188

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1189 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1248

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1249 LVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1308

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI++TE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1309 DSKKRIVVTETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAV 1368

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1369 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1428

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL-ATGMM 1418
            TVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLDAEKCK GIEIP+     M
Sbjct: 1429 TVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCKAGIEIPMNVGAGM 1488

Query: 1419 GGPAGMFFGSAATPSSIPGPPAW 1441
                GMFFGSAATPS  P    W
Sbjct: 1489 MAGGGMFFGSAATPSMSPHLTPW 1511



 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/452 (77%), Positives = 372/452 (82%), Gaps = 56/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 551 KEQMMNILMFLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDDG 610

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEH  L+MGILCKK+LGTS+GSLLHIC LELGHEVCG+FYGNIQTVV
Sbjct: 611 PYKWISPGDTKVMVEHSELVMGILCKKTLGTSAGSLLHICMLELGHEVCGQFYGNIQTVV 670

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N+WLLLEG                                              HSIGIG
Sbjct: 671 NSWLLLEG----------------------------------------------HSIGIG 684

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVI KAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 685 DTIADPQTYLEIQKAIKKAKEDVIEVIHKAHNMELEPTPGNTLRQTFENQVNRILNDARD 744

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 745 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 804

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 805 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 864

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGEAVE Q + T+ L++K FE K++FDP+NER  
Sbjct: 865 VMVHYDGTVRNSVGQLIQLRYGEDGLCGEAVEFQNLPTIKLANKSFERKFKFDPTNER-- 922

Query: 492 LRNVSSLRRVVNSKPL--LIGCWKLTS-VEKE 520
                 LRR+ N   L  L+G   + S +EKE
Sbjct: 923 -----YLRRIFNEDVLRELMGSGDVISELEKE 949



 Score =  282 bits (721), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 170/317 (53%), Positives = 205/317 (64%), Gaps = 30/317 (9%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S D   + E+E VD        R    ++L ++   G  
Sbjct: 1237 LNCIFNDDNAEKLVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQG-- 1294

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVV----LPCNLMEVIFILQRW-----KLWGN 767
            I  + K +  L +     R + + +GE   +    L  +   ++ +L        + + N
Sbjct: 1295 IEAIGKVYMHLPQTDSKKRIVVTETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSN 1354

Query: 768  ENLRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 824
            +    +C+I  VL   +VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 1355 D----ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 1410

Query: 825  HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
            HGINRQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLD
Sbjct: 1411 HGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLD 1470

Query: 885  AEKCKDGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSP----G 939
            AEKCK GIEIP+  G      G  F  +A   SMSP +TPW Q +TPAY ++ SP    G
Sbjct: 1471 AEKCKAGIEIPMNVGAGMMAGGGMFFGSAATPSMSPHLTPWTQGATPAYGSMWSPGNMLG 1530

Query: 940  AAMTPGGPGFSPSVAGE 956
            + MTPGGP FSPS A +
Sbjct: 1531 SGMTPGGPSFSPSGASD 1547



 Score =  232 bits (592), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1160 LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1219

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1220 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1251

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K QDEE+ VDKMEDDMFLRCIE
Sbjct: 1252 RIRIMNSDDNKFQDEEETVDKMEDDMFLRCIE 1283



 Score =  203 bits (516), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 106/170 (62%), Positives = 119/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGEAVE Q + T+ L++K FE
Sbjct: 852 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEAVEFQNLPTIKLANKSFE 911

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIFNEDVLRELMGSGDVISELEKE      W+QL +          
Sbjct: 912 RKFKFDPTNERYLRRIFNEDVLRELMGSGDVISELEKE------WEQLSK---------- 955

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DRE LR+IF SGES VVLPCNL  +I+  Q+
Sbjct: 956 -------------------DREVLRQIFPSGESKVVLPCNLQRMIWNAQK 986



 Score =  171 bits (432), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 776  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 835

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 836  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 877



 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1371 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1431 DVLMDAASHAEVDPMRG 1447



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK ARPDWM+VTVLPVPPL+VRPAVVM+GSARNQ+ + + L
Sbjct: 225 EECFILGMDPKLARPDWMIVTVLPVPPLAVRPAVVMYGSARNQDDLTHKL 274



 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/43 (93%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 509  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 551


>gi|78183109|gb|ABB29550.1| putative RNA polymerase II 215 kD subunit [Drosophila teissieri]
          Length = 769

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/504 (73%), Positives = 402/504 (79%), Gaps = 24/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 157  VTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQAN 216

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 217  PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 276

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
               G        A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 277  LTGG--------AARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 328

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 329  VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 388

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 389  LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 448

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 449  DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 508

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 509  RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 568

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 569  TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSM 628

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            +GG A MF G  +TPS  P    W
Sbjct: 629  LGG-AAMFIGGGSTPSMTPPMTPW 651



 Score =  288 bits (738), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 158/190 (83%), Gaps = 8/190 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 496 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 555

Query: 830 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
           QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 556 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 615

Query: 890 DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAAMTPGG 946
            GIEIP  L + M+GG A MF G  +TP SM+P MTPW   +TP Y +     +AMTPGG
Sbjct: 616 FGIEIPNTLGSSMLGG-AAMFIGGGSTP-SMTPPMTPWVNCNTPRYFSPPGHVSAMTPGG 673

Query: 947 PGFSPSVAGE 956
           P FSPS A +
Sbjct: 674 PSFSPSAASD 683



 Score =  220 bits (561), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 300  LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 359

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 360  LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 391

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 392  RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 423



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
           SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 511 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 570

Query: 576 DVLMDAAAHAEADPMRG 592
           DVLMDAAAHAE DPMRG
Sbjct: 571 DVLMDAAAHAETDPMRG 587



 Score =  151 bits (381), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 102/161 (63%), Gaps = 35/161 (21%)

Query: 601 AMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSN 660
           AMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SN
Sbjct: 1   AMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKAFEKRFKFDWSN 60

Query: 661 ERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISE 720
           ER +R++F +DV++E+  S + I ELE E                               
Sbjct: 61  ERYMRKVFTDDVIKEMTDSSEAIQELEAE------------------------------- 89

Query: 721 LEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
               W++L  DR++LR+IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 90  ----WDRLVGDRDSLRQIFPNGDSKVVLPCNLQRMIWNVQK 126



 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 53/62 (85%)

Query: 428 AMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSN 487
           AMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SN
Sbjct: 1   AMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKAFEKRFKFDWSN 60

Query: 488 ER 489
           ER
Sbjct: 61  ER 62


>gi|195059969|ref|XP_001995730.1| GH17604 [Drosophila grimshawi]
 gi|193896516|gb|EDV95382.1| GH17604 [Drosophila grimshawi]
          Length = 1889

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/508 (72%), Positives = 403/508 (79%), Gaps = 24/508 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1015 VTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQAN 1074

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1134

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1135 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 1186

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1187 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1246

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1247 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1306

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 1307 DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1366

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1367 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1426

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 1427 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSM 1486

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAWYPIH 1445
            +GG A +F G  +TPS  P    W   H
Sbjct: 1487 LGG-AAIFMGGGSTPSMTPPMTPWVNCH 1513



 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/418 (78%), Positives = 356/418 (85%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 REQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 669 NNWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQMAIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 683 DTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 863 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKVFEKRFKFDWSNER 920



 Score =  286 bits (731), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 144/190 (75%), Positives = 157/190 (82%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1414 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1473

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNALMSPGAAMTPGG 946
             GIEIP  L + M+GG A +F G  +TP SM+P MTPW    TP Y +     +AMTPGG
Sbjct: 1474 FGIEIPNSLGSSMLGG-AAIFMGGGSTP-SMTPPMTPWVNCHTPRYFSPPGHVSAMTPGG 1531

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1532 PSFSPSAASD 1541



 Score =  220 bits (561), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1218 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1249

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1281



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875



 Score =  164 bits (414), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 86/170 (50%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKVFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER +R++F +DV++E+  S   I ELE                        
Sbjct: 910 KRFKFDWSNERYMRKVFADDVIKEITESSVAIQELE------------------------ 945

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW+ L  DR+ LR IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 946 -----------AEWDHLVTDRDNLRTIFRNGDSKVVLPCNLQRMIWNVQK 984



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1369 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1429 DVLMDAAAHAETDPMRG 1445



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 223 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 272



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 507  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549


>gi|4808166|emb|CAB42797.1| largest subunit of the RNA polymerase II complex [Drosophila
            pseudoobscura]
          Length = 1811

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/504 (73%), Positives = 402/504 (79%), Gaps = 24/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 937  VTGADRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQAN 996

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 997  PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1056

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1057 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 1108

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1109 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1168

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1169 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1228

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 1229 DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1288

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1289 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1348

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 1349 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSM 1408

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            +GG A MF G  +TPS  P    W
Sbjct: 1409 LGGTA-MFIGGGSTPSMTPPMTPW 1431



 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/418 (78%), Positives = 356/418 (85%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 471 REQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 530

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHE+ GRFYGNIQTV+
Sbjct: 531 PYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELGHEIAGRFYGNIQTVI 590

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 591 NNWLLLEG----------------------------------------------HSIGIG 604

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQMAIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 605 DTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 664

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 665 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 724

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 725 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 784

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE V+ Q + TV LS+K FE +++FD SNER
Sbjct: 785 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVDFQNMPTVKLSNKAFEKRFKFDWSNER 842



 Score =  287 bits (734), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 158/190 (83%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1276 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1335

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1336 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1395

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAAMTPGG 946
             GIEIP  L + M+GG A MF G  +TP SM+P MTPW   +TP Y +     +AMTPGG
Sbjct: 1396 FGIEIPNTLGSSMLGGTA-MFIGGGSTP-SMTPPMTPWVNCNTPRYFSPPGHVSAMTPGG 1453

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1454 PSFSPSAASD 1463



 Score =  221 bits (562), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1080 LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1139

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1140 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1171

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1172 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1203



 Score =  167 bits (422), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 107/249 (42%), Positives = 139/249 (55%), Gaps = 31/249 (12%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 696  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 755

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V     + + + Y      
Sbjct: 756  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV----GQLIQLRYG----- 806

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD--LNCIFNDDNAEKLVLRIRI 1186
                   L    +D + M   KL+ +A  ++    + ++  +  +F D+        I+ 
Sbjct: 807  ----EDGLCGELVDFQNMPTVKLSNKAFEKRFKFDWSNERYMRKVFTDE-------VIKE 855

Query: 1187 MNSDDSKMQDEEDAVDK-MEDDMFLRCIEANMLSDMTLQ--------GIEAIGKVYMHLP 1237
            M      +QD E   D  M+D   LR I  N  S + L          ++ I  +   LP
Sbjct: 856  MTDSSEAIQDLESEWDHLMQDRDHLRQIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLP 915

Query: 1238 QTDSKKRII 1246
               S  R+I
Sbjct: 916  TDLSPMRVI 924



 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 110/170 (64%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE V+ Q + TV LS+K FE
Sbjct: 772 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVDFQNMPTVKLSNKAFE 831

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER +R++F ++V++E+  S + I +LE                        
Sbjct: 832 KRFKFDWSNERYMRKVFTDEVIKEMTDSSEAIQDLE------------------------ 867

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW+ L +DR+ LR+IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 868 -----------SEWDHLMQDRDHLRQIFPNGDSKVVLPCNLQRMIWNVQK 906



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1291 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1350

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1351 DVLMDAAAHAETDPMRG 1367



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 145 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 194



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 429  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 471


>gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase II complex [Drosophila guanche]
 gi|40217263|emb|CAD68001.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217265|emb|CAD70679.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217267|emb|CAD70680.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217269|emb|CAD70681.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217271|emb|CAD70682.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217273|emb|CAD70683.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217275|emb|CAD70684.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217277|emb|CAD70685.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217279|emb|CAD70686.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217281|emb|CAD70687.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217283|emb|CAD70688.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217285|emb|CAD70689.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217287|emb|CAD70690.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217289|emb|CAD70691.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217291|emb|CAD70692.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217293|emb|CAD70693.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217295|emb|CAD70694.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217297|emb|CAD70695.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217299|emb|CAD70696.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217301|emb|CAD70697.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217303|emb|CAD70698.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217305|emb|CAD70699.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217307|emb|CAD70700.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217309|emb|CAD70701.1| RNA polymerase II large subunit [Drosophila guanche]
          Length = 1889

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/504 (73%), Positives = 402/504 (79%), Gaps = 24/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1015 VTGADRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQAN 1074

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1134

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1135 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 1186

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1187 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1246

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1247 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1306

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 1307 DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1366

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1367 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1426

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 1427 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSM 1486

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            +GG A MF G  +TPS  P    W
Sbjct: 1487 LGGTA-MFIGGGSTPSMTPPMTPW 1509



 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/418 (79%), Positives = 356/418 (85%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 REQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHE+ GRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELGHEIAGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 669 NNWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQMAIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 683 DTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 863 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKAFEKRFKFDWSNER 920



 Score =  287 bits (734), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 158/190 (83%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1414 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1473

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAAMTPGG 946
             GIEIP  L + M+GG A MF G  +TP SM+P MTPW   +TP Y +     +AMTPGG
Sbjct: 1474 FGIEIPNTLGSSMLGGTA-MFIGGGSTP-SMTPPMTPWVNCNTPRYFSPPGHVSAMTPGG 1531

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1532 PSFSPSAASD 1541



 Score =  221 bits (562), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1218 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1249

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1281



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875



 Score =  164 bits (415), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 108/170 (63%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKAFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER +R++F ++V++E+  S + I +LE                        
Sbjct: 910 KRFKFDWSNERYMRKVFTDEVIKEMTDSSEAIQDLE------------------------ 945

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW+ L  DR+ LR IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 946 -----------SEWDHLMHDRDNLRVIFPNGDSKVVLPCNLQRMIWNVQK 984



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1369 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1429 DVLMDAAAHAETDPMRG 1445



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 223 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 272



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 507  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549


>gi|324120588|dbj|BAJ78685.1| RNA polymerase II largest subunit [Stenopsyche marmorata]
          Length = 1754

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/539 (70%), Positives = 410/539 (76%), Gaps = 67/539 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            VAG D+LSKQANENATLLFQCLVRSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1016 VAGNDRLSKQANENATLLFQCLVRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQCN 1075

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 1076 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPR--LKEIINISKKPKA---- 1129

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                     PS   F        L   A + AE   NVL       L +VTANTAIYYDP
Sbjct: 1130 ---------PSLTVF--------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 1172

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQNTVI EDQEFVNVYYEMPDFDPT+ISPWLLRIELDRKRMTDKKLTME I+EKINAGF
Sbjct: 1173 DPQNTVIAEDQEFVNVYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGF 1232

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTL 1223
            GDDLNCIFNDDNAEKLVLRIRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTL
Sbjct: 1233 GDDLNCIFNDDNAEKLVLRIRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTL 1292

Query: 1224 QGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTF 1283
            QGIEAIGKVYMHLPQTDSKKRI+IT+SGEFKAIA+WLLETDGTS+MKVLSERDVDPVRTF
Sbjct: 1293 QGIEAIGKVYMHLPQTDSKKRIVITDSGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTF 1352

Query: 1284 SNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHG 1343
            SNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHG
Sbjct: 1353 SNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHG 1412

Query: 1344 INRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1403
            INRQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDA+
Sbjct: 1413 INRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAQ 1472

Query: 1404 KCKDGIEIPLATGMMGGPAGMFFGSAATPSSIPGPP------------AWYPIHIAISL 1450
            KCK+G+E+       G    MFFG   TPS  P  P            AW P     S+
Sbjct: 1473 KCKNGMEMGGLGVGTGLGTSMFFG---TPSLTPHSPWNAQGTPAYGSMAWSPSQYGSSM 1528



 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/418 (80%), Positives = 355/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP W GKMP+PCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 550 KEQMMNILMFLPTWIGKMPKPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 609

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGH+  GRFYGNIQTVV
Sbjct: 610 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHDTAGRFYGNIQTVV 669

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 670 NNWLLLEG----------------------------------------------HSIGIG 683

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 684 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 743

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 744 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 803

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 804 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 863

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDPSNER
Sbjct: 864 VMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKFDPSNER 921



 Score =  273 bits (698), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 140/192 (72%), Positives = 157/192 (81%), Gaps = 13/192 (6%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1356 ICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1415

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDA+KCK
Sbjct: 1416 QDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAQKCK 1475

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPW-AQSTPAYNALM-SP---GAAMTP 944
            +G+E+       G    MFFG+     S++P  +PW AQ TPAY ++  SP   G++MTP
Sbjct: 1476 NGMEMGGLGVGTGLGTSMFFGTP----SLTPH-SPWNAQGTPAYGSMAWSPSQYGSSMTP 1530

Query: 945  GGPGFSPSVAGE 956
            GGP FSPS A +
Sbjct: 1531 GGPSFSPSGASD 1542



 Score =  224 bits (572), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 114/153 (74%), Positives = 119/153 (77%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPT+ISPWLLRIELDRKRMTDKK
Sbjct: 1159 LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPWLLRIELDRKRMTDKK 1218

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1219 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1250

Query: 1649 RIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++K QD EE+ VDKMEDDMFLRCIE
Sbjct: 1251 RIRIMNSDENKFQDNEEETVDKMEDDMFLRCIE 1283



 Score =  189 bits (481), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 97/170 (57%), Positives = 115/170 (67%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 851 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFE 910

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDPSNER LRRIF+E V++EL  SG VI++LE                        
Sbjct: 911 KKFKFDPSNERYLRRIFSEQVIKELTESGYVIADLE------------------------ 946

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EWE+LC+DREALR+IF  GES VVLPCNL  +I+ +Q+
Sbjct: 947 -----------SEWEQLCKDREALRQIFPGGESKVVLPCNLQRMIWNVQK 985



 Score =  167 bits (424), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 775  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 834

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 835  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 876



 Score =  162 bits (411), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1371 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1431 DVLMDAASHAEVDPMRG 1447



 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 508  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 550



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARPDWM++TV+PVPPL VRPAVVM G+A+NQ+ + + L
Sbjct: 224 EECFILGMDPKFARPDWMIITVMPVPPLCVRPAVVMFGAAKNQDDLTHKL 273


>gi|125983594|ref|XP_001355562.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
 gi|54643878|gb|EAL32621.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
          Length = 1889

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/519 (71%), Positives = 406/519 (78%), Gaps = 54/519 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1015 VTGADRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQAN 1074

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPR--LKEIINISKKPKA---- 1128

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                     PS   F        L   A + AE   NVL       L +VTANTAIYYDP
Sbjct: 1129 ---------PSLTVF--------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 1171

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GF
Sbjct: 1172 DPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGF 1231

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            G+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ
Sbjct: 1232 GEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQ 1291

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIEAIGKVYMHLPQTDSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT S
Sbjct: 1292 GIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSS 1351

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIFQVLGIEAVRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 1352 NDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1411

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEK
Sbjct: 1412 NRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEK 1471

Query: 1405 CKDGIEIP--LATGMMGGPAGMFFGSAATPSSIPGPPAW 1441
            C+ GIEIP  L + M+GG A MF G  +TPS  P    W
Sbjct: 1472 CRFGIEIPNTLGSSMLGGTA-MFIGGGSTPSMTPPMTPW 1509



 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/418 (79%), Positives = 356/418 (85%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 REQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHE+ GRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELGHEIAGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 669 NNWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQMAIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 683 DTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 863 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKAFEKRFKFDWSNER 920



 Score =  286 bits (733), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 158/190 (83%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1414 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1473

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAAMTPGG 946
             GIEIP  L + M+GG A MF G  +TP SM+P MTPW   +TP Y +     +AMTPGG
Sbjct: 1474 FGIEIPNTLGSSMLGGTA-MFIGGGSTP-SMTPPMTPWVNCNTPRYFSPPGHVSAMTPGG 1531

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1532 PSFSPSAASD 1541



 Score =  221 bits (562), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1218 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1249

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1281



 Score =  166 bits (421), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 110/170 (64%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKAFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER +R++F ++V++E+  S + I +LE                        
Sbjct: 910 KRFKFDWSNERYMRKVFTDEVIKEMTDSSEAIQDLE------------------------ 945

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW+ L +DR+ LR+IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 946 -----------SEWDHLMQDRDHLRQIFPNGDSKVVLPCNLQRMIWNVQK 984



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1369 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1429 DVLMDAAAHAETDPMRG 1445



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 223 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 272



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 507  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549


>gi|195168657|ref|XP_002025147.1| GL26742 [Drosophila persimilis]
 gi|194108592|gb|EDW30635.1| GL26742 [Drosophila persimilis]
          Length = 1804

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/514 (71%), Positives = 405/514 (78%), Gaps = 54/514 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1015 VTGADRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQAN 1074

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPR--LKEIINISKKPKA---- 1128

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                     PS   F        L   A + AE   NVL       L +VTANTAIYYDP
Sbjct: 1129 ---------PSLTVF--------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 1171

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GF
Sbjct: 1172 DPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGF 1231

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            G+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ
Sbjct: 1232 GEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQ 1291

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIEAIGKVYMHLPQTDSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT S
Sbjct: 1292 GIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSS 1351

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIFQVLGIEAVRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 1352 NDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1411

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEK
Sbjct: 1412 NRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEK 1471

Query: 1405 CKDGIEIP--LATGMMGGPAGMFFGSAATPSSIP 1436
            C+ GIEIP  L + M+GG A MF G  +TPS  P
Sbjct: 1472 CRFGIEIPNTLGSSMLGGTA-MFIGGGSTPSMTP 1504



 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/418 (79%), Positives = 356/418 (85%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 REQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHE+ GRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELGHEIAGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 669 NNWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQMAIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 683 DTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 863 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKAFEKRFKFDWSNER 920



 Score =  271 bits (693), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 140/192 (72%), Positives = 156/192 (81%), Gaps = 15/192 (7%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1414 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1473

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTP----WAQSTPAYNALMSPGAA-- 941
             GIEIP  L + M+GG A MF G  +TP SM+P MTP    ++ ++P Y A  SPG A  
Sbjct: 1474 FGIEIPNTLGSSMLGGTA-MFIGGGSTP-SMTPPMTPVSPSYSPTSPNYTA-SSPGGASP 1530

Query: 942  -MTPGGPGFSPS 952
              +P  P +SP+
Sbjct: 1531 NYSPSSPNYSPT 1542



 Score =  221 bits (562), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1218 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1249

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1281



 Score =  167 bits (422), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 110/170 (64%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKAFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER +R++F ++V++E+  S + I +LE                        
Sbjct: 910 KRFKFDWSNERYMRKVFTDEVIKEMTDSSEAIQDLE------------------------ 945

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW+ L +DR+ LR+IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 946 -----------SEWDHLMQDRDHLRQIFPNGDSKVVLPCNLQRMIWNVQK 984



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1369 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1429 DVLMDAAAHAETDPMRG 1445



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 223 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 272



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 507  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549


>gi|194762514|ref|XP_001963379.1| GF20366 [Drosophila ananassae]
 gi|190629038|gb|EDV44455.1| GF20366 [Drosophila ananassae]
          Length = 1889

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/504 (73%), Positives = 402/504 (79%), Gaps = 24/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1015 VTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQAN 1074

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1134

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDP+ TVI EDQEFVN
Sbjct: 1135 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPKRTVISEDQEFVN 1186

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1187 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1246

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1247 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1306

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 1307 DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1366

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1367 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1426

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 1427 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSM 1486

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            +GG A MF G  +TPS  P    W
Sbjct: 1487 LGG-AAMFIGGGSTPSMTPPMTPW 1509



 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/418 (78%), Positives = 355/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 REQMMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 669 NNWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 683 DTIADPQTYNEIQCAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 863 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNER 920



 Score =  288 bits (737), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 158/190 (83%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1414 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1473

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAAMTPGG 946
             GIEIP  L + M+GG A MF G  +TP SM+P MTPW   +TP Y +     +AMTPGG
Sbjct: 1474 FGIEIPNTLGSSMLGG-AAMFIGGGSTP-SMTPPMTPWVNCNTPRYFSPPGHVSAMTPGG 1531

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1532 PSFSPSAASD 1541



 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 108/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPKRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1218 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1249

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1281



 Score =  173 bits (438), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 111/170 (65%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER +R++F +DV++E+  S D I ELE E                      
Sbjct: 910 KRFKFDWSNERYMRKVFTDDVIKEMTDSSDAIQELEAE---------------------- 947

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        W++L  DR++LR+IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 948 -------------WDRLVTDRDSLRQIFPNGDSKVVLPCNLQRMIWNVQK 984



 Score =  166 bits (421), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1369 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1429 DVLMDAAAHAETDPMRG 1445



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 223 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 272



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 507  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549


>gi|78183105|gb|ABB29548.1| putative RNA polymerase II 215 kD subunit [Drosophila orena]
          Length = 750

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/504 (73%), Positives = 402/504 (79%), Gaps = 24/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 157  VTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQAN 216

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 217  PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 276

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
               G        A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 277  LTGG--------AARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 328

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 329  VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 388

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 389  LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 448

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 449  DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 508

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 509  RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 568

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 569  TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSM 628

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            +GG A MF G  +TPS  P    W
Sbjct: 629  LGG-AAMFIGGGSTPSMTPPMTPW 651



 Score =  288 bits (736), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 158/190 (83%), Gaps = 8/190 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 496 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 555

Query: 830 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
           QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 556 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 615

Query: 890 DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAAMTPGG 946
            GIEIP  L + M+GG A MF G  +TP SM+P MTPW   +TP Y +     +AMTPGG
Sbjct: 616 FGIEIPNTLGSSMLGG-AAMFIGGGSTP-SMTPPMTPWDNCNTPRYFSPPGHVSAMTPGG 673

Query: 947 PGFSPSVAGE 956
           P FSPS A +
Sbjct: 674 PSFSPSAASD 683



 Score =  220 bits (560), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 300  LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 359

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 360  LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 391

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 392  RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 423



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
           SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 511 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 570

Query: 576 DVLMDAAAHAEADPMRG 592
           DVLMDAAAHAE DPMRG
Sbjct: 571 DVLMDAAAHAETDPMRG 587



 Score =  149 bits (377), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 101/161 (62%), Gaps = 35/161 (21%)

Query: 601 AMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSN 660
           AMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SN
Sbjct: 1   AMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNLPTVKLSNKAFEKRFKFDWSN 60

Query: 661 ERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISE 720
           ER +R++F +DV++E+  S + I ELE E                               
Sbjct: 61  ERYMRKVFTDDVIKEMTDSSEAIQELEAE------------------------------- 89

Query: 721 LEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
               W+ L  DR++LR+IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 90  ----WDHLVGDRDSLRQIFPNGDSKVVLPCNLQRMIWNVQK 126



 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 53/62 (85%)

Query: 428 AMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSN 487
           AMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SN
Sbjct: 1   AMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNLPTVKLSNKAFEKRFKFDWSN 60

Query: 488 ER 489
           ER
Sbjct: 61  ER 62


>gi|403182441|gb|EJY57389.1| AAEL017363-PA [Aedes aegypti]
          Length = 1887

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/503 (74%), Positives = 400/503 (79%), Gaps = 24/503 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG D+LSKQANENATLLFQCLVRSTLCTK VAE +RL++EAFEWL+GEIE RFQQAQ  
Sbjct: 1013 VAGTDRLSKQANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQCN 1072

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1073 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVF 1132

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1133 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVN 1184

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNA+K
Sbjct: 1185 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADK 1244

Query: 1180 LVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
            LVLRIRIMN DDSK Q+ EE+ +DKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ
Sbjct: 1245 LVLRIRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1304

Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
            TD+K+RI+IT  GEFKAI +WLLETDGT++MKVLSERDVDPVRT SNDICEIFQVLGIEA
Sbjct: 1305 TDAKRRIVITPEGEFKAIGEWLLETDGTAMMKVLSERDVDPVRTASNDICEIFQVLGIEA 1364

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
            VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE
Sbjct: 1365 VRKSVEKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1424

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMM 1418
            ETVDVL DAAAHAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK G+EIP  T +M
Sbjct: 1425 ETVDVLNDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKLGMEIP-HTSIM 1483

Query: 1419 GGPAGMFFGSAATPSSIPGPPAW 1441
            GG +GMFFG  ATPS  P    W
Sbjct: 1484 GG-SGMFFGPGATPSMSPAMTPW 1505



 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/432 (78%), Positives = 361/432 (83%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMPQPCILKPKPLWTGKQ+F+LIIPGNVNM RTHSTHPD+ED G
Sbjct: 547 KEQMMNLLMFLPTWDGKMPQPCILKPKPLWTGKQIFTLIIPGNVNMIRTHSTHPDEEDDG 606

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHI FLELGHE+ GRFYGNIQTVV
Sbjct: 607 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHIVFLELGHEIAGRFYGNIQTVV 666

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 667 NNWLLLEG----------------------------------------------HSIGIG 680

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AI+KAKEDVI VIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 681 DTIADPQTYAEIQRAIRKAKEDVIGVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 740

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 741 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 800

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTP+EF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 801 IKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 860

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE +YRFDP+NER  
Sbjct: 861 VMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKVFEKRYRFDPTNER-- 918

Query: 492 LRNVSSLRRVVN 503
                +LRRV N
Sbjct: 919 -----NLRRVFN 925



 Score =  291 bits (744), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 149/190 (78%), Positives = 158/190 (83%), Gaps = 9/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1353 ICEIFQVLGIEAVRKSVEKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1412

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVL DAAAHAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK
Sbjct: 1413 QDTGALMRCSFEETVDVLNDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1472

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYN--ALMSPGAAMTPGG 946
             G+EIP  T +MGG +GMFFG  ATP SMSP MTPW QS TP Y   +   P + MTPGG
Sbjct: 1473 LGMEIP-HTSIMGG-SGMFFGPGATP-SMSPAMTPWQQSQTPGYCDWSPSGPPSGMTPGG 1529

Query: 947  PGFSPSVAGE 956
            P FSPS   +
Sbjct: 1530 PSFSPSAQSD 1539



 Score =  220 bits (560), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 112/153 (73%), Positives = 117/153 (76%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1156 LRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1215

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNA+KLVL
Sbjct: 1216 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNADKLVL 1247

Query: 1649 RIRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIE 1680
            RIRIMN DDSK Q +EE+ +DKMEDDMFLRCIE
Sbjct: 1248 RIRIMNGDDSKFQENEEENMDKMEDDMFLRCIE 1280



 Score =  186 bits (472), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 114/170 (67%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 848 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKVFE 907

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YRFDP+NER LRR+FNEDV++EL  S DVI E+E                        
Sbjct: 908 KRYRFDPTNERNLRRVFNEDVIKELTESPDVIQEIE------------------------ 943

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       E+E+L  DREALR+IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 944 -----------AEYEQLLRDREALRQIFPNGDSKVVLPCNLQRMIWNVQK 982



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP+EF+FHAM
Sbjct: 772  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAM 831

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 832  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 873



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 74/77 (96%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1368 SVEKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1427

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL DAAAHAE DPMRG
Sbjct: 1428 DVLNDAAAHAEVDPMRG 1444



 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +ENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 505  IENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 547



 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGMDPKFARPDWM++TVLPVPPL+VRPAVVM G+ +NQ+ + + L
Sbjct: 221 EECYVLGMDPKFARPDWMIITVLPVPPLAVRPAVVMFGATKNQDDLTHKL 270


>gi|308229952|gb|ADO24383.1| RNA polymerase II large subunit, partial [Drosophila guttifera]
          Length = 1872

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/508 (72%), Positives = 402/508 (79%), Gaps = 24/508 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLF+CL+RSTLCTK VAE +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1008 VTGHDRISKQANENATLLFRCLIRSTLCTKYVAEEFRLSTEAFEWLIGEIETRFQQAQAN 1067

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1068 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1127

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1128 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 1179

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1180 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1239

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1240 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1299

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+IT++GEFKAI +WLLETDGTS+MKVLSERDVDP RT SNDICEIFQVLGIEAV
Sbjct: 1300 DSKKRIVITDTGEFKAIGEWLLETDGTSMMKVLSERDVDPQRTSSNDICEIFQVLGIEAV 1359

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1360 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1419

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 1420 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRYGIEIPNSLGSSM 1479

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAWYPIH 1445
            +GG A MF G  +TPS  P    W   H
Sbjct: 1480 LGG-AAMFIGGGSTPSMTPPMTPWVNCH 1506



 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/418 (78%), Positives = 354/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 542 REQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 601

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+ GILCKK+LGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 602 PYKWISPGDTKVMVEHGELITGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 661

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 662 NNWLLLEG----------------------------------------------HSIGIG 675

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 676 DTIADPQTYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 735

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 736 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 795

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 796 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 855

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 856 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNLPTVKLSNKVFEKRFKFDWSNER 913



 Score =  287 bits (735), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 157/190 (82%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1347 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1406

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1407 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1466

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNALMSPGAAMTPGG 946
             GIEIP  L + M+GG A MF G  +TP SM+P MTPW    TP Y +     +AMTPGG
Sbjct: 1467 YGIEIPNSLGSSMLGG-AAMFIGGGSTP-SMTPPMTPWVNCHTPRYFSPPGHVSAMTPGG 1524

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1525 PSFSPSAASD 1534



 Score =  221 bits (562), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1151 LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1210

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1211 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1242

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1243 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1274



 Score =  174 bits (440), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 110/170 (64%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 843 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNLPTVKLSNKVFE 902

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER +R++F +DV++E+  S D I ELE                        
Sbjct: 903 KRFKFDWSNERYMRKVFTDDVIKEVTDSSDAIQELE------------------------ 938

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EWEKL EDR+ LR IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 939 -----------GEWEKLVEDRDNLRTIFPNGDSKVVLPCNLQRMIWNVQK 977



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 767  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 826

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 827  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 868



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1362 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1421

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1422 DVLMDAAAHAETDPMRG 1438



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 216 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 265



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 500  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 542


>gi|324120570|dbj|BAJ78676.1| RNA polymerase II largest subunit [Neocolochelyna itoi]
          Length = 1815

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/504 (75%), Positives = 408/504 (80%), Gaps = 23/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D LSK AN NATLLFQCLVRSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQV 
Sbjct: 1016 VAGKDDLSKLANTNATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQVF 1075

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1076 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1135

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1136 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVN 1187

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPT+ISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1188 VYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1247

Query: 1180 LVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
            LVLRIRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ
Sbjct: 1248 LVLRIRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1307

Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
            TDSKKRI++T++GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA
Sbjct: 1308 TDSKKRIVVTDTGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1367

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
            VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE
Sbjct: 1368 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1427

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT-GM 1417
            ETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+A    
Sbjct: 1428 ETVDVLLDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDLLLDAEKCKAGIEIPMAVGAG 1487

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            M G AGMFFGSAATPS  P    W
Sbjct: 1488 MMGGAGMFFGSAATPSMSPQMTPW 1511



 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/418 (80%), Positives = 356/418 (85%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILM LP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 550 KEQMMNILMHLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 609

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
            Y+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGH+VCGRFYGNIQTV+
Sbjct: 610 QYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHDVCGRFYGNIQTVI 669

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 670 NNWLLLEG----------------------------------------------HSIGIG 683

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 684 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 743

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 744 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 803

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 804 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 863

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDP+NER
Sbjct: 864 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKFDPTNER 921



 Score =  280 bits (717), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 145/192 (75%), Positives = 156/192 (81%), Gaps = 8/192 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1356 ICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1415

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK
Sbjct: 1416 QDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDLLLDAEKCK 1475

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ--STPAYNA-LMSP--GAAMTP 944
             GIEIP+A G         F  +A   SMSPQMTPW Q  +TP Y A  MSP  G+ MTP
Sbjct: 1476 AGIEIPMAVGAGMMGGAGMFFGSAATPSMSPQMTPWNQMGATPGYGASSMSPALGSGMTP 1535

Query: 945  GGPGFSPSVAGE 956
            GG  FSPS A +
Sbjct: 1536 GGACFSPSGASD 1547



 Score =  226 bits (576), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 115/153 (75%), Positives = 119/153 (77%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPT+ISPWLLRIELDRKRMTDKK
Sbjct: 1159 LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPWLLRIELDRKRMTDKK 1218

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1219 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1250

Query: 1649 RIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K QD EE+ VDKMEDDMFLRCIE
Sbjct: 1251 RIRIMNSDDNKFQDTEEETVDKMEDDMFLRCIE 1283



 Score =  197 bits (501), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 101/170 (59%), Positives = 118/170 (69%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 851 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFE 910

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIF+ED++RE+MGSG+VISELE+E                      
Sbjct: 911 KKFKFDPTNERYLRRIFSEDIVREMMGSGEVISELERE---------------------- 948

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE+L +DR ALREIF SGES VVLPCNL  +I+  Q+
Sbjct: 949 -------------WEQLNKDRVALREIFPSGESKVVLPCNLQRMIWNGQK 985



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 775  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 834

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 835  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 876



 Score =  161 bits (407), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1371 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL+DAA+HAE DPMRG
Sbjct: 1431 DVLLDAASHAEVDPMRG 1447



 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)

Query: 17  TSVYAWYVVPY-PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
           T+  AW ++ +   EES ILGMDPKFARPDWM+VTVLPVPPLSVRPAVVM+GSA+NQ+ +
Sbjct: 210 TAERAWEILKHITDEESFILGMDPKFARPDWMIVTVLPVPPLSVRPAVVMYGSAKNQDDL 269

Query: 76  MNIL 79
            + L
Sbjct: 270 THKL 273



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 55/88 (62%), Gaps = 21/88 (23%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K                 
Sbjct: 508  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK----------------- 550

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLR 1576
                ++ +N+   +P +D     P +L+
Sbjct: 551  ----EQMMNILMHLPSWDGKMPQPCILK 574


>gi|324120554|dbj|BAJ78668.1| RNA polymerase II largest subunit [Reticulitermes speratus]
          Length = 1732

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/502 (75%), Positives = 403/502 (80%), Gaps = 21/502 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 1016 VAGDDHLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVS 1075

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1076 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVF 1135

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1136 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVN 1187

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1188 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1247

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1248 LVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1307

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRII+T++GEFKAIA+WLLETDGTS+MKVLSERDVD  RTFSNDICEIF VLGIEAV
Sbjct: 1308 DSKKRIIVTDTGEFKAIAEWLLETDGTSMMKVLSERDVDTNRTFSNDICEIFSVLGIEAV 1367

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1368 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1427

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG 1419
            TVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLDAEKCK GIEIP++ G   
Sbjct: 1428 TVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCKAGIEIPMSMGAGM 1487

Query: 1420 GPAGMFFGSAATPSSIPGPPAW 1441
               GMFFGS ATPS  P    W
Sbjct: 1488 MGGGMFFGSVATPSMSPHMTPW 1509



 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/458 (76%), Positives = 376/458 (82%), Gaps = 56/458 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLPIWDGKMPQP I+KPKPLWTGKQVFSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 550 KEQMMNLLMFLPIWDGKMPQPAIMKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDDG 609

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           P++WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCG+FYGNIQTVV
Sbjct: 610 PFKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGQFYGNIQTVV 669

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 670 NNWLLLEG----------------------------------------------HSIGIG 683

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 684 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 743

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 744 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 803

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 804 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 863

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDP+NER  
Sbjct: 864 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKFDPTNER-- 921

Query: 492 LRNVSSLRRVVNSKPL--LIGCWKLTS-VEKEMNTVLQ 526
                 LRR+ N   L  L+G   + S +EKE   +++
Sbjct: 922 -----YLRRIFNEDILKELMGSGDVISELEKEWEQLVK 954



 Score =  280 bits (716), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 177/313 (56%), Positives = 207/313 (66%), Gaps = 23/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S D   + E+E VD        R    ++L ++   G  
Sbjct: 1236 LNCIFNDDNAEKLVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQG-- 1293

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVV----LPCNLMEVIFILQRWKLWGNENLRF 772
            I  + K +  L +     R I + +GE   +    L  +   ++ +L    +  N     
Sbjct: 1294 IEAIGKVYMHLPQTDSKKRIIVTDTGEFKAIAEWLLETDGTSMMKVLSERDVDTNRTFSN 1353

Query: 773  -LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
             +C+I  VL   +VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN
Sbjct: 1354 DICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1413

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLDAEKC
Sbjct: 1414 RQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKC 1473

Query: 889  KDGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSP----GAAMT 943
            K GIEIP++ G      GMFFGS ATP SMSP MTPW Q +TPAY +  SP    G+  T
Sbjct: 1474 KAGIEIPMSMGAGMMGGGMFFGSVATP-SMSPHMTPWNQGATPAYVSSWSPGNMLGSGST 1532

Query: 944  PGGPGFSPSVAGE 956
            PGGP FSPS A +
Sbjct: 1533 PGGPSFSPSSASD 1545



 Score =  232 bits (591), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1159 LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1218

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1219 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1250

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K QDEE+ VDKMEDDMFLRCIE
Sbjct: 1251 RIRIMNSDDNKFQDEEETVDKMEDDMFLRCIE 1282



 Score =  206 bits (524), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 105/170 (61%), Positives = 120/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 851 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFE 910

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIFNED+L+ELMGSGDVISELEKE                      
Sbjct: 911 KKFKFDPTNERYLRRIFNEDILKELMGSGDVISELEKE---------------------- 948

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE+L +DREALR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 949 -------------WEQLVKDREALRQIFPSGESKVVLPCNLQRMIWNVQK 985



 Score =  171 bits (433), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 775  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 834

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 835  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 876



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1370 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1429

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1430 DVLMDAASHAEVDPMRG 1446



 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/43 (93%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 508  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 550



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMD  FARPDWM++TVLPVPPLSVRPAVVM+GSARNQ+ + + L
Sbjct: 224 EECYILGMDATFARPDWMIMTVLPVPPLSVRPAVVMYGSARNQDDLTHKL 273


>gi|324120590|dbj|BAJ78686.1| RNA polymerase II largest subunit [Panorpa takenouchii]
          Length = 1725

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/516 (73%), Positives = 406/516 (78%), Gaps = 30/516 (5%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG D+LS QANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GEIE RFQQAQ  
Sbjct: 1014 VAGNDRLSVQANENATLLFQCLVRSTLCTKFVSEEFRLSSEAFEWLIGEIETRFQQAQCN 1073

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
            A   VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1074 AGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1133

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1134 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVN 1185

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            +YYEMPDFDPT+ISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1186 IYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1245

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQT
Sbjct: 1246 LVLRIRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQT 1305

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRIIITE+GEFKAIA+WLLETDGTS+MKVLSERDVDP+RTFSNDICEIF VLGIEAV
Sbjct: 1306 DSKKRIIITETGEFKAIAEWLLETDGTSMMKVLSERDVDPIRTFSNDICEIFAVLGIEAV 1365

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMNTVL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1366 RKSVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1425

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAA HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC++GI+I   L   M
Sbjct: 1426 TVDVLMDAACHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCREGIDIANTLGASM 1485

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW----YPIHIAIS 1449
            +G     +FG  ATPS+ P    W     P +IA S
Sbjct: 1486 IGEIP--YFG-MATPSTSPRMTPWNQGATPAYIASS 1518



 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/432 (78%), Positives = 360/432 (83%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP W+GKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 548 KEQMMNILMFLPTWNGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 607

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+ GILCK +LGTS+GSLLHICFLELGHEV GRFYGNIQTVV
Sbjct: 608 PYKWISPGDTKVMVEHGELIKGILCKNTLGTSAGSLLHICFLELGHEVAGRFYGNIQTVV 667

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N+WLLLEG                                              HSIGIG
Sbjct: 668 NHWLLLEG----------------------------------------------HSIGIG 681

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY+EIQ +IKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 682 DTIADPQTYMEIQNSIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 741

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 742 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 801

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 802 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 861

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FD +NER  
Sbjct: 862 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQHLRTIKLSNKVFEKKFKFDATNER-- 919

Query: 492 LRNVSSLRRVVN 503
                 LRR+ N
Sbjct: 920 -----HLRRIFN 926



 Score =  268 bits (685), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 144/193 (74%), Positives = 156/193 (80%), Gaps = 14/193 (7%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMNTVL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1353 ICEIFAVLGIEAVRKSVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1412

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAA HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC+
Sbjct: 1413 QDTGALMRCSFEETVDVLMDAACHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCR 1472

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNA---LMSPGAAMT 943
            +GI+I   L   M+G     +FG  ATPS+ SP+MTPW Q +TPAY A     SP   MT
Sbjct: 1473 EGIDIANTLGASMIGEIP--YFG-MATPST-SPRMTPWNQGATPAYIASSYSHSP-YGMT 1527

Query: 944  PGGPGFSPSVAGE 956
            PGG  FSPS A +
Sbjct: 1528 PGGASFSPSGASD 1540



 Score =  228 bits (582), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/152 (74%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVN+YYEMPDFDPT+ISPWLLRIELDRKRMTDKK
Sbjct: 1157 LRKVTANTAIYYDPDPQNTVIAEDQEFVNIYYEMPDFDPTKISPWLLRIELDRKRMTDKK 1216

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1217 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1248

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++K QDEE+ VDKMEDDMFLRCIE
Sbjct: 1249 RIRIMNSDENKFQDEEETVDKMEDDMFLRCIE 1280



 Score =  190 bits (482), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 99/170 (58%), Positives = 115/170 (67%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 849 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQHLRTIKLSNKVFE 908

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD +NER LRRIFNED+++EL  SG VISELE E                      
Sbjct: 909 KKFKFDATNERHLRRIFNEDIIKELTESGYVISELESE---------------------- 946

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE+L +DREALR IFS+GES VVLPCNL  +I+ +Q+
Sbjct: 947 -------------WEQLNKDREALRSIFSNGESKVVLPCNLQRMIWNVQK 983



 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/215 (47%), Positives = 134/215 (62%), Gaps = 17/215 (7%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 773  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 832

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V     + + + Y      
Sbjct: 833  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV----GQLIQLRYGEDGLC 888

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN 1188
               +    LR      ++ +KK   +A +E+        L  IFN+D  ++L     ++ 
Sbjct: 889  GETVEFQHLRTIKLSNKVFEKKFKFDATNER-------HLRRIFNEDIIKELTESGYVI- 940

Query: 1189 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTL 1223
               S+++ E + ++K  D   LR I +N  S + L
Sbjct: 941  ---SELESEWEQLNK--DREALRSIFSNGESKVVL 970



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 74/77 (96%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1368 SVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1427

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA HAE DPMRG
Sbjct: 1428 DVLMDAACHAEVDPMRG 1444



 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 506  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 548



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGMDPKFARPDWM++TV+PVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 222 EECFVLGMDPKFARPDWMIITVMPVPPLAVRPAVVMFGAAKNQDDLTHKL 271


>gi|170062578|ref|XP_001866731.1| DNA-directed RNA polymerase II largest subunit [Culex
            quinquefasciatus]
 gi|167880465|gb|EDS43848.1| DNA-directed RNA polymerase II largest subunit [Culex
            quinquefasciatus]
          Length = 1874

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/503 (73%), Positives = 399/503 (79%), Gaps = 39/503 (7%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            VAG D+LSKQANENATLLFQCLVRSTLCTK VAE +RL +EAFEWL+GEIE RFQQAQ  
Sbjct: 1013 VAGTDRLSKQANENATLLFQCLVRSTLCTKYVAEEFRLINEAFEWLIGEIETRFQQAQCN 1072

Query: 1011 -----VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFF 1065
                  +       V  K +  G  +  L   I     P++             PS   F
Sbjct: 1073 PGEMMTLNTFHFAGVSSKNVTLGVPR--LKEIINISKRPKA-------------PSLTVF 1117

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1118 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVN 1169

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNA+K
Sbjct: 1170 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADK 1229

Query: 1180 LVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
            LVLRIRIMN++D+K QD +E+ +DKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ
Sbjct: 1230 LVLRIRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1289

Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
            TD+K+RI+IT  GEFKAI +WLLETDGTS+MKVLSERDVDPVRT SNDICEIFQVLGIEA
Sbjct: 1290 TDAKRRIVITPEGEFKAIGEWLLETDGTSMMKVLSERDVDPVRTASNDICEIFQVLGIEA 1349

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
            VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE
Sbjct: 1350 VRKSVEKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1409

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMM 1418
            ETVDVL DAAAHAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK G+EIP  T +M
Sbjct: 1410 ETVDVLNDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKLGMEIP-HTSIM 1468

Query: 1419 GGPAGMFFGSAATPSSIPGPPAW 1441
            G  +GMFFG  ATPS  P    W
Sbjct: 1469 GS-SGMFFGPGATPSMSPAMTPW 1490



 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/432 (77%), Positives = 360/432 (83%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMPQPCILKPKPLWTGKQ+F+LIIPGNVNM RTHSTHPD+ED G
Sbjct: 547 KEQMMNLLMFLPTWDGKMPQPCILKPKPLWTGKQIFTLIIPGNVNMIRTHSTHPDEEDDG 606

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHI FLELGHE+ GRFYGNIQTVV
Sbjct: 607 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHIVFLELGHEIAGRFYGNIQTVV 666

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 667 NNWLLLEG----------------------------------------------HSIGIG 680

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADP TY EIQ AI+KAKEDVI VIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 681 DTIADPATYTEIQRAIRKAKEDVIGVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 740

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 741 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 800

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTP+EF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 801 IKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 860

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE +YRFDP+NER  
Sbjct: 861 VMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKVFEKRYRFDPTNER-- 918

Query: 492 LRNVSSLRRVVN 503
                ++RRV N
Sbjct: 919 -----NIRRVFN 925



 Score =  290 bits (741), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 148/190 (77%), Positives = 157/190 (82%), Gaps = 9/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1338 ICEIFQVLGIEAVRKSVEKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1397

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVL DAAAHAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK
Sbjct: 1398 QDTGALMRCSFEETVDVLNDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1457

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYN--ALMSPGAAMTPGG 946
             G+EIP  T +MG  +GMFFG  ATP SMSP MTPW QS TP Y   +   P + MTPGG
Sbjct: 1458 LGMEIP-HTSIMGS-SGMFFGPGATP-SMSPAMTPWQQSQTPGYGEWSPSGPPSGMTPGG 1514

Query: 947  PGFSPSVAGE 956
            P FSPS   +
Sbjct: 1515 PSFSPSAQSD 1524



 Score =  218 bits (554), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/153 (71%), Positives = 118/153 (77%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1141 LRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1200

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNA+KLVL
Sbjct: 1201 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNADKLVL 1232

Query: 1649 RIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIE 1680
            RIRIMN++D+K QD +E+ +DKMEDDMFLRCIE
Sbjct: 1233 RIRIMNNEDNKFQDNDEENMDKMEDDMFLRCIE 1265



 Score =  186 bits (473), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 115/170 (67%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 848 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKVFE 907

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YRFDP+NER +RR+FNE+V++EL  SGDVI E+E                        
Sbjct: 908 KRYRFDPTNERNIRRVFNEEVIKELTESGDVIQEIE------------------------ 943

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       E+E+L  DREALR+IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 944 -----------AEYEQLLRDREALRQIFPNGDSKVVLPCNLQRMIWNVQK 982



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP+EF+FHAM
Sbjct: 772  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAM 831

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 832  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 873



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 74/77 (96%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1353 SVEKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1412

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL DAAAHAE DPMRG
Sbjct: 1413 DVLNDAAAHAEVDPMRG 1429



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +ENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 505  IENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 547



 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGMDPKFARPDWM++TVLPVPPL+VRPAVVM G+ +NQ+ + + L
Sbjct: 221 EECYVLGMDPKFARPDWMIITVLPVPPLAVRPAVVMFGATKNQDDLTHKL 270


>gi|324120550|dbj|BAJ78666.1| RNA polymerase II largest subunit [Tenodera aridifolia]
          Length = 1844

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/503 (75%), Positives = 403/503 (80%), Gaps = 22/503 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GEIE RFQQAQ  
Sbjct: 1017 VAGDDHLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQCS 1076

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1136

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1137 --------LTGAAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVN 1188

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1189 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1248

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1249 LVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1308

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRIIITE+GEFKAIA+WLLETDGTS+MKVLSERDVD  RTFSNDICEIF VLGIEAV
Sbjct: 1309 DSKKRIIITETGEFKAIAEWLLETDGTSMMKVLSERDVDTNRTFSNDICEIFSVLGIEAV 1368

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1369 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1428

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA-TGMM 1418
            TVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLDAEKCK GIEIP++    M
Sbjct: 1429 TVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCKAGIEIPMSVGAGM 1488

Query: 1419 GGPAGMFFGSAATPSSIPGPPAW 1441
             G  GMFFGSAATPS  P    W
Sbjct: 1489 MGGVGMFFGSAATPSMSPQSTPW 1511



 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/432 (79%), Positives = 363/432 (84%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLPIWDGKMPQP I+KPKPLWTGKQVFSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 551 KEQMMNLLMFLPIWDGKMPQPAIMKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDDG 610

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           P++WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCG+FYGNIQTVV
Sbjct: 611 PFKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGQFYGNIQTVV 670

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 671 NNWLLLEG----------------------------------------------HSIGIG 684

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 685 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 744

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 745 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 804

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 805 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 864

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDP+NER  
Sbjct: 865 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQSLPTIKLSNKAFEKKFKFDPTNER-- 922

Query: 492 LRNVSSLRRVVN 503
                 LRR+ N
Sbjct: 923 -----YLRRIFN 929



 Score =  276 bits (707), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 168/313 (53%), Positives = 200/313 (63%), Gaps = 23/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S D   + E+E VD        R    ++L ++   G  
Sbjct: 1237 LNCIFNDDNAEKLVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQG-- 1294

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVV----LPCNLMEVIFILQRWKLWGNENLRF 772
            I  + K +  L +     R I + +GE   +    L  +   ++ +L    +  N     
Sbjct: 1295 IEAIGKVYMHLPQTDSKKRIIITETGEFKAIAEWLLETDGTSMMKVLSERDVDTNRTFSN 1354

Query: 773  -LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
             +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN
Sbjct: 1355 DICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1414

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLDAEKC
Sbjct: 1415 RQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKC 1474

Query: 889  KDGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSP----GAAMT 943
            K GIEIP++ G         F  +A   SMSPQ TPW Q +TP Y ++ SP    G+  T
Sbjct: 1475 KAGIEIPMSVGAGMMGGVGMFFGSAATPSMSPQSTPWNQGATPGY-SMWSPGNMLGSGAT 1533

Query: 944  PGGPGFSPSVAGE 956
            PGGP FSPS A +
Sbjct: 1534 PGGPSFSPSAASD 1546



 Score =  232 bits (592), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1160 LKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1219

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1220 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1251

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K QDEE+ VDKMEDDMFLRCIE
Sbjct: 1252 RIRIMNSDDNKFQDEEETVDKMEDDMFLRCIE 1283



 Score =  201 bits (510), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 105/170 (61%), Positives = 119/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 852 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQSLPTIKLSNKAFE 911

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIFNEDVL+ELMGSGDVISELE+E      W+QL R          
Sbjct: 912 KKFKFDPTNERYLRRIFNEDVLKELMGSGDVISELERE------WEQLVR---------- 955

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR+IF SGE  VVLPCNL  +I+ +Q+
Sbjct: 956 -------------------DREALRQIFPSGERQVVLPCNLQRMIWNVQK 986



 Score =  171 bits (432), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 776  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 835

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 836  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 877



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1371 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1431 DVLMDAASHAEVDPMRG 1447



 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 45/50 (90%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARPDWM+VTVLPVPPL+VRPAVVM+GSARNQ+ + + L
Sbjct: 225 EECYILGMDPKFARPDWMIVTVLPVPPLAVRPAVVMYGSARNQDDLTHKL 274



 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/43 (93%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 509  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 551


>gi|324120508|dbj|BAJ78645.1| RNA polymerase II largest subunit [Lepidocampa weberi]
          Length = 1558

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/500 (76%), Positives = 405/500 (81%), Gaps = 22/500 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED+LSKQANENATLLFQCLVRSTLCTK VAE +RLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 1016 VAGEDRLSKQANENATLLFQCLVRSTLCTKQVAEEFRLSSEAFEWLIGEIETRFQQAQVQ 1075

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1076 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1135

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1136 --------LTGNAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVN 1187

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1188 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1247

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQT
Sbjct: 1248 LVLRIRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQT 1307

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRII+T++GEFKAIA+WLLETDGTSLMKVLSERDVDPVRT+SNDICEIF VLGIEAV
Sbjct: 1308 DSKKRIIVTDTGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTYSNDICEIFSVLGIEAV 1367

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1368 RKSVEKEMNMVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1427

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL-ATGMM 1418
            TVDVLMDAA+HAE DPMRGVSENII+GQLPR+GTGCFDL+LDAEKCK GIE+P+     M
Sbjct: 1428 TVDVLMDAASHAEVDPMRGVSENIILGQLPRLGTGCFDLILDAEKCKYGIELPMNIGAGM 1487

Query: 1419 GGPAGMFFGSAATPSSIPGP 1438
             G  GMFFGSAATPSS   P
Sbjct: 1488 MGGVGMFFGSAATPSSGMSP 1507



 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/445 (76%), Positives = 367/445 (82%), Gaps = 50/445 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQM N+LM LPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVNM RTHS HPD+ED G
Sbjct: 550 KEQMFNVLMHLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNMIRTHSAHPDEEDDG 609

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICF+ELGHEVCG+FYGNIQTV+
Sbjct: 610 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFVELGHEVCGQFYGNIQTVI 669

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 670 NNWLLLEG----------------------------------------------HSIGIG 683

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           D+IADPQTYLEIQ  IKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 684 DSIADPQTYLEIQKTIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 743

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 744 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 803

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 804 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 863

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD T+RNSVGQLIQLRYGEDGL GE VE Q + TV LS++ FE K++FDPSNER  
Sbjct: 864 VMVHYDGTIRNSVGQLIQLRYGEDGLAGEHVEFQSLPTVKLSNRAFEKKFKFDPSNER-Y 922

Query: 492 LRNVSS---LRRVVNSKPLLIGCWK 513
           LR V +   ++ V+ S  ++ G  K
Sbjct: 923 LRRVFTEDIMKEVMGSGDVISGLEK 947



 Score =  288 bits (738), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 178/312 (57%), Positives = 212/312 (67%), Gaps = 28/312 (8%)

Query: 667  IFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISE 720
            IFN+D     VLR  +M S D   + E+E VD        R    ++L ++   G  I  
Sbjct: 1239 IFNDDNAEKLVLRIRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQG--IEA 1296

Query: 721  LEKEWEKLCEDREALREIFS-SGESNVVLP-------CNLMEVIF--ILQRWKLWGNENL 770
            + K +  L +     R I + +GE   +          +LM+V+    +   + + N+  
Sbjct: 1297 IAKVYMHLPQTDSKKRIIVTDTGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTYSND-- 1354

Query: 771  RFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 827
              +C+I  VL   +VRKSVEKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 1355 --ICEIFSVLGIEAVRKSVEKEMNMVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1412

Query: 828  NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 887
            NRQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENII+GQLPR+GTGCFDL+LDAEK
Sbjct: 1413 NRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIILGQLPRLGTGCFDLILDAEK 1472

Query: 888  CKDGIEIPL-ATGMMGGPAGMFFGSAATPSS-MSPQMTPWAQSTPAYNAL-MSPGAAMTP 944
            CK GIE+P+     M G  GMFFGSAATPSS MSPQMTPWAQ+TP Y+   +SP   MTP
Sbjct: 1473 CKYGIELPMNIGAGMMGGVGMFFGSAATPSSGMSPQMTPWAQATPLYSGSGLSPSTGMTP 1532

Query: 945  GGPGFSPSVAGE 956
            GGPGFSPS A +
Sbjct: 1533 GGPGFSPSGASD 1544



 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1159 LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1218

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1219 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1250

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDDSK Q+EE+ VDKMEDDMFLRCIE
Sbjct: 1251 RIRIMNSDDSKFQEEEEQVDKMEDDMFLRCIE 1282



 Score =  186 bits (473), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 115/170 (67%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD T+RNSVGQLIQLRYGEDGL GE VE Q + TV LS++ FE
Sbjct: 851 GYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAGEHVEFQSLPTVKLSNRAFE 910

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDPSNER LRR+F ED+++E+MGSGDVIS LEKE                      
Sbjct: 911 KKFKFDPSNERYLRRVFTEDIMKEVMGSGDVISGLEKE---------------------- 948

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        W +L  DR++LR+IF SGE+ VVLPCNL  +I+ +Q+
Sbjct: 949 -------------WGQLSSDRDSLRQIFPSGENKVVLPCNLHRMIWNVQK 985



 Score =  171 bits (433), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 775  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 834

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 835  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSV 876



 Score =  157 bits (398), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 74/77 (96%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1370 SVEKEMNMVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1429

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1430 DVLMDAASHAEVDPMRG 1446



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARPDWM+VTVLPVPPL VRPAVVM GSARNQ+ + + L
Sbjct: 224 EECYILGMDPKFARPDWMIVTVLPVPPLCVRPAVVMFGSARNQDDLTHKL 273



 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+T RQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 508  VENIHITTRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 550


>gi|270010112|gb|EFA06560.1| hypothetical protein TcasGA2_TC009471 [Tribolium castaneum]
          Length = 1899

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/499 (76%), Positives = 402/499 (80%), Gaps = 22/499 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED+LSKQANENATLLFQCLVRSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQV 
Sbjct: 1014 VAGEDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQVN 1073

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1074 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1133

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVIPEDQEFVN
Sbjct: 1134 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVN 1185

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1186 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1245

Query: 1180 LVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
            LVLRIRIMNSDD K  D  ++ VDKM+DDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQ
Sbjct: 1246 LVLRIRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQ 1305

Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
             DSKKRI+ITE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEA
Sbjct: 1306 NDSKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEA 1365

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
            VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE
Sbjct: 1366 VRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1425

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMM 1418
            ETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK GI IP A G  
Sbjct: 1426 ETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKMGIPIPQAHGAD 1485

Query: 1419 GGPAGMFFGSAATPSSIPG 1437
               +GMFFGSAATPS  PG
Sbjct: 1486 IMASGMFFGSAATPSMSPG 1504



 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/430 (80%), Positives = 361/430 (83%), Gaps = 53/430 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLPIWDGKMP+P ILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 548 KEQMMNLLMFLPIWDGKMPRPAILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 607

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           P +WISPGDTKV+VEHG L+MGILCK++LGTS+GSLLHIC LELGHEVCGRFYGNIQTVV
Sbjct: 608 PNKWISPGDTKVMVEHGELVMGILCKRTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVV 667

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 668 NNWLLLEG----------------------------------------------HSIGIG 681

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 682 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 741

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 742 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 801

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 802 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 861

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE K+RFDPSNER  
Sbjct: 862 VMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFERKFRFDPSNER-- 919

Query: 492 LRNVSSLRRV 501
                 LRRV
Sbjct: 920 -----YLRRV 924



 Score =  291 bits (745), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 150/194 (77%), Positives = 159/194 (81%), Gaps = 11/194 (5%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK
Sbjct: 1414 QDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1473

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSP--QMTPWAQ-STPAYNALMSP----GAAM 942
             GI IP A G     +GMFFGSAATP SMSP   MTPW Q +TP   +  SP    G+ M
Sbjct: 1474 MGIPIPQAHGADIMASGMFFGSAATP-SMSPGAAMTPWNQGATPYVGSAWSPHNLMGSGM 1532

Query: 943  TPGGPGFSPSVAGE 956
            TPGGP FSPS A +
Sbjct: 1533 TPGGPAFSPSAASD 1546



 Score =  206 bits (523), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 113/153 (73%), Positives = 117/153 (76%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1157 LRKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1216

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1217 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1248

Query: 1649 RIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD K  D  ++ VDKM+DDMFLRCIE
Sbjct: 1249 RIRIMNSDDGKFGDGADEDVDKMDDDMFLRCIE 1281



 Score =  195 bits (496), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/170 (60%), Positives = 119/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 849 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFE 908

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDPSNER LRR+F E+V+++LMGSG+VISELE E      W+QL++          
Sbjct: 909 RKFRFDPSNERYLRRVFTEEVIKDLMGSGEVISELETE------WEQLQK---------- 952

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 953 -------------------DREALRQIFPSGESKVVLPCNLQRMIWNVQK 983



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 773  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 832

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 833  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 874



 Score =  160 bits (405), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1369 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1429 DVLMDAASHAEVDPMRG 1445



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/43 (83%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VEN+H+TPRQIITPQ N+PVMGIVQDTLTA+RKMTKRDVF++K
Sbjct: 506  VENLHITPRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFIEK 548



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARPDWM+VTVLPVPPL VRPAVVM+GSARNQ+ + + L
Sbjct: 222 EECFILGMDPKFARPDWMIVTVLPVPPLPVRPAVVMYGSARNQDDLTHKL 271


>gi|91085731|ref|XP_973470.1| PREDICTED: similar to GA13798-PA [Tribolium castaneum]
          Length = 2007

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/499 (76%), Positives = 402/499 (80%), Gaps = 22/499 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED+LSKQANENATLLFQCLVRSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQV 
Sbjct: 1019 VAGEDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQVN 1078

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1079 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1138

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVIPEDQEFVN
Sbjct: 1139 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVN 1190

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1191 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1250

Query: 1180 LVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
            LVLRIRIMNSDD K  D  ++ VDKM+DDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQ
Sbjct: 1251 LVLRIRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQ 1310

Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
             DSKKRI+ITE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEA
Sbjct: 1311 NDSKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEA 1370

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
            VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE
Sbjct: 1371 VRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1430

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMM 1418
            ETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK GI IP A G  
Sbjct: 1431 ETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKMGIPIPQAHGAD 1490

Query: 1419 GGPAGMFFGSAATPSSIPG 1437
               +GMFFGSAATPS  PG
Sbjct: 1491 IMASGMFFGSAATPSMSPG 1509



 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/430 (80%), Positives = 361/430 (83%), Gaps = 53/430 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLPIWDGKMP+P ILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 553 KEQMMNLLMFLPIWDGKMPRPAILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 612

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           P +WISPGDTKV+VEHG L+MGILCK++LGTS+GSLLHIC LELGHEVCGRFYGNIQTVV
Sbjct: 613 PNKWISPGDTKVMVEHGELVMGILCKRTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVV 672

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 673 NNWLLLEG----------------------------------------------HSIGIG 686

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 687 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 746

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 747 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 806

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 807 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 866

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE K+RFDPSNER  
Sbjct: 867 VMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFERKFRFDPSNER-- 924

Query: 492 LRNVSSLRRV 501
                 LRRV
Sbjct: 925 -----YLRRV 929



 Score =  291 bits (744), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 150/194 (77%), Positives = 159/194 (81%), Gaps = 11/194 (5%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1359 ICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1418

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK
Sbjct: 1419 QDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1478

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSP--QMTPWAQ-STPAYNALMSP----GAAM 942
             GI IP A G     +GMFFGSAATP SMSP   MTPW Q +TP   +  SP    G+ M
Sbjct: 1479 MGIPIPQAHGADIMASGMFFGSAATP-SMSPGAAMTPWNQGATPYVGSAWSPHNLMGSGM 1537

Query: 943  TPGGPGFSPSVAGE 956
            TPGGP FSPS A +
Sbjct: 1538 TPGGPAFSPSAASD 1551



 Score =  206 bits (523), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 113/153 (73%), Positives = 117/153 (76%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1162 LRKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1221

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1222 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1253

Query: 1649 RIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD K  D  ++ VDKM+DDMFLRCIE
Sbjct: 1254 RIRIMNSDDGKFGDGADEDVDKMDDDMFLRCIE 1286



 Score =  195 bits (496), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/170 (60%), Positives = 119/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 854 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFE 913

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDPSNER LRR+F E+V+++LMGSG+VISELE E      W+QL++          
Sbjct: 914 RKFRFDPSNERYLRRVFTEEVIKDLMGSGEVISELETE------WEQLQK---------- 957

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 958 -------------------DREALRQIFPSGESKVVLPCNLQRMIWNVQK 988



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 778  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 837

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 838  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 879



 Score =  160 bits (405), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1374 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1433

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1434 DVLMDAASHAEVDPMRG 1450



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/43 (83%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VEN+H+TPRQIITPQ N+PVMGIVQDTLTA+RKMTKRDVF++K
Sbjct: 511  VENLHITPRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFIEK 553



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARPDWM+VTVLPVPPL VRPAVVM+GSARNQ+ + + L
Sbjct: 227 EECFILGMDPKFARPDWMIVTVLPVPPLPVRPAVVMYGSARNQDDLTHKL 276


>gi|308229946|gb|ADO24380.1| RNA polymerase II large subunit, partial [Drosophila brachynephros]
          Length = 1847

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/508 (72%), Positives = 401/508 (78%), Gaps = 24/508 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D++SKQANENATLLFQCL+RSTLCTK VAE +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 996  VTGNDRISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGEIETRFQQAQAN 1055

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1056 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1115

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1116 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVN 1167

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1168 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1227

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1228 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1287

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 1288 DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1347

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEM+ VL  YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1348 RKSVEKEMDAVLHSYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1407

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP  L + M
Sbjct: 1408 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSM 1467

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAWYPIH 1445
            +GG A MF G  +TPS  P    W   H
Sbjct: 1468 LGG-AAMFIGGGSTPSMTPPMTPWVNCH 1494



 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/418 (78%), Positives = 355/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGKMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 530 REQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 589

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 590 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 649

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 650 NNWLLLEG----------------------------------------------HSIGIG 663

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 664 DTIADPQTYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 723

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 724 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 783

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 784 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 843

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 844 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKVFEKRFKFDWSNER 901



 Score =  280 bits (716), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 142/190 (74%), Positives = 155/190 (81%), Gaps = 8/190 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEM+ VL  YGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1335 ICEIFQVLGIEAVRKSVEKEMDAVLHSYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1394

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1395 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1454

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNALMSPGAAMTPGG 946
             GIEIP  L + M+GG A MF G  +TP SM+P MTPW    TP Y +     +AMTPGG
Sbjct: 1455 FGIEIPNSLGSSMLGG-AAMFIGGGSTP-SMTPPMTPWVNCHTPRYFSPPGHVSAMTPGG 1512

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1513 PSFSPSAASD 1522



 Score =  220 bits (561), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1139 LRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1198

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 1199 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1230

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1231 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1262



 Score =  170 bits (431), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 109/170 (64%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 831 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKVFE 890

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER +R++F +DV++E+  S D I ELE                        
Sbjct: 891 KRFKFDWSNERYMRKVFTDDVIKEMTDSSDAIQELE------------------------ 926

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW+KL  DR+ LR IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 927 -----------GEWDKLVTDRDNLRTIFPNGDSKVVLPCNLQRMIWNVQK 965



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 755  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 814

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 815  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 856



 Score =  154 bits (390), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/77 (93%), Positives = 73/77 (94%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEM+ VL  YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1350 SVEKEMDAVLHSYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1409

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPMRG
Sbjct: 1410 DVLMDAAAHAETDPMRG 1426



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 204 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 253



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 488  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 530


>gi|312375441|gb|EFR22815.1| hypothetical protein AND_14157 [Anopheles darlingi]
          Length = 1880

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/511 (72%), Positives = 400/511 (78%), Gaps = 30/511 (5%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG D+LSKQANENATLLFQCLVRSTLCTK VAE +RL++EAFEWL+GEIE RFQQAQV 
Sbjct: 1013 VAGTDRLSKQANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQVN 1072

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1073 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVF 1132

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1133 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVN 1184

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNA+K
Sbjct: 1185 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADK 1244

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN D+   ++EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1245 LVLRIRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1304

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            D+KKRI+IT  GEFK I +WLLETDGTS+MKVLSERDVDPVRT+SNDICEIF VLGIEAV
Sbjct: 1305 DAKKRIVITPEGEFKPIGEWLLETDGTSMMKVLSERDVDPVRTYSNDICEIFSVLGIEAV 1364

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1365 RKSVEKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1424

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG 1419
            TVDVL DAAAHAE DPMRGVSENII+GQLPRMGTGCFDLLLDAEKCK G+EIP  + M  
Sbjct: 1425 TVDVLNDAAAHAEVDPMRGVSENIILGQLPRMGTGCFDLLLDAEKCKLGMEIPHTSIM-- 1482

Query: 1420 GPAGMFFGSAATP-------SSIPGPPAWYP 1443
            G  GMFFGSAATP       S+ PG   W P
Sbjct: 1483 GATGMFFGSAATPSMTPWQQSATPGYGGWSP 1513



 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/432 (78%), Positives = 362/432 (83%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMPQPCILKPKPLWTGKQ+F+LIIPGNVNM RTHSTHPD+ED G
Sbjct: 547 KEQMMNLLMFLPTWDGKMPQPCILKPKPLWTGKQIFTLIIPGNVNMIRTHSTHPDEEDDG 606

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHI FLELGHE+ GRFYGNIQTVV
Sbjct: 607 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHIVFLELGHEIAGRFYGNIQTVV 666

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 667 NNWLLLEG----------------------------------------------HSIGIG 680

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AI+KAKEDVI VIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 681 DTIADPQTYAEIQRAIRKAKEDVIGVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 740

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 741 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 800

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTP+EF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 801 IKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 860

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV+YD TVRNSVGQLIQLRYGEDGLCGEAVE Q + T+ LS+K FE +YRFDP+NER  
Sbjct: 861 VMVNYDGTVRNSVGQLIQLRYGEDGLCGEAVEFQNLPTIKLSNKVFEKRYRFDPTNER-- 918

Query: 492 LRNVSSLRRVVN 503
                +LRR+ N
Sbjct: 919 -----TLRRIFN 925



 Score =  285 bits (728), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 153/190 (80%), Gaps = 13/190 (6%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1352 ICEIFSVLGIEAVRKSVEKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1411

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVL DAAAHAE DPMRGVSENII+GQLPRMGTGCFDLLLDAEKCK
Sbjct: 1412 QDTGALMRCSFEETVDVLNDAAAHAEVDPMRGVSENIILGQLPRMGTGCFDLLLDAEKCK 1471

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNAL--MSPGAAMTPGG 946
             G+EIP  + M  G  GMFFGSAATPS     MTPW QS TP Y       P + MTPGG
Sbjct: 1472 LGMEIPHTSIM--GATGMFFGSAATPS-----MTPWQQSATPGYGGWSPSGPASGMTPGG 1524

Query: 947  PGFSPSVAGE 956
            P FSPS   +
Sbjct: 1525 PSFSPSAQSD 1534



 Score =  217 bits (553), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 115/152 (75%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1156 LRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1215

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNA+KLVL
Sbjct: 1216 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNADKLVL 1247

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN D+   ++EE+ VDKMEDDMFLRCIE
Sbjct: 1248 RIRIMNEDNKFQENEEENVDKMEDDMFLRCIE 1279



 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/170 (56%), Positives = 114/170 (67%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGEAVE Q + T+ LS+K FE
Sbjct: 848 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGEAVEFQNLPTIKLSNKVFE 907

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YRFDP+NER LRRIFNEDV++EL  S  VI E+E                        
Sbjct: 908 KRYRFDPTNERTLRRIFNEDVIKELTESASVIQEIE------------------------ 943

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       E+E+L  DREALR+IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 944 -----------AEYEQLMRDREALRQIFPNGDSKVVLPCNLQRMIWNVQK 982



 Score =  167 bits (422), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP+EF+FHAM
Sbjct: 772  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAM 831

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 832  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 873



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 74/77 (96%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1367 SVEKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1426

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL DAAAHAE DPMRG
Sbjct: 1427 DVLNDAAAHAEVDPMRG 1443



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +ENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 505  IENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 547



 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGMDPKFARPDWM++TVLPVPPL+VRPAVVM G+ +NQ+ + + L
Sbjct: 221 EECYVLGMDPKFARPDWMIITVLPVPPLAVRPAVVMFGATKNQDDLTHKL 270


>gi|324120526|dbj|BAJ78654.1| RNA polymerase II largest subunit [Isonychia japonica]
          Length = 1530

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/503 (74%), Positives = 399/503 (79%), Gaps = 28/503 (5%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED+LS+QANENATLLFQCLVRS LCTK VA+ YRLS+EAFEWLVGEIE RFQQAQ  
Sbjct: 999  VAGEDRLSRQANENATLLFQCLVRSILCTKNVADKYRLSTEAFEWLVGEIETRFQQAQAQ 1058

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1059 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1118

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1119 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVN 1170

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            +YYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFGDDLNCIFNDDNAEK
Sbjct: 1171 IYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINLGFGDDLNCIFNDDNAEK 1230

Query: 1180 LVLRIRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1237
            LVLRIRIMNS  +D K  DEE+  DKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLP
Sbjct: 1231 LVLRIRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLP 1290

Query: 1238 QTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1297
            QTDSKK+I++T++G FKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIE
Sbjct: 1291 QTDSKKKIVVTDNGRFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIE 1350

Query: 1298 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1357
            AVRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF
Sbjct: 1351 AVRKSVEKEMNQVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1410

Query: 1358 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LAT 1415
            EETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTG FDLLLDAEKCK GIEIP  L  
Sbjct: 1411 EETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGAFDLLLDAEKCKHGIEIPTHLGA 1470

Query: 1416 GMMGGP---AGMFFGSAATPSSI 1435
            GMM GP    G+F+  +ATPSS+
Sbjct: 1471 GMMAGPGMVGGVFYSGSATPSSM 1493



 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/430 (80%), Positives = 360/430 (83%), Gaps = 53/430 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+L+FLPIWDGKMPQP ILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDE+SG
Sbjct: 533 KEQMMNLLLFLPIWDGKMPQPAILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDENSG 592

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHE CGRFYGNIQTVV
Sbjct: 593 PYNWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEECGRFYGNIQTVV 652

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 653 NNWLLLEG----------------------------------------------HSIGIG 666

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY+EIQ AIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 667 DTIADPQTYIEIQKAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 726

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 727 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 786

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 787 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 846

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ L++ +FE  YRFDPSNER  
Sbjct: 847 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLANDEFERGYRFDPSNER-- 904

Query: 492 LRNVSSLRRV 501
                 LRRV
Sbjct: 905 -----HLRRV 909



 Score =  303 bits (777), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 151/191 (79%), Positives = 161/191 (84%), Gaps = 11/191 (5%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1340 ICEIFSVLGIEAVRKSVEKEMNQVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1399

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTG FDLLLDAEKCK
Sbjct: 1400 QDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGAFDLLLDAEKCK 1459

Query: 890  DGIEIP--LATGMMGGP---AGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSP--GAA 941
             GIEIP  L  GMM GP    G+F+  +ATPSSMSP MTPW Q  TP+Y +  SP  G+ 
Sbjct: 1460 HGIEIPTHLGAGMMAGPGMVGGVFYSGSATPSSMSPHMTPWNQGGTPSYASAWSPGVGSG 1519

Query: 942  MTPGGPGFSPS 952
            MTPGGPGFSPS
Sbjct: 1520 MTPGGPGFSPS 1530



 Score =  218 bits (554), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 111/154 (72%), Positives = 115/154 (74%), Gaps = 30/154 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVN+YYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1142 LRKVTANTAIYYDPDPQNTVISEDQEFVNIYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1201

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1202 LTMEQIAEKINLGFG----------------------------DDLNCIFNDDNAEKLVL 1233

Query: 1649 RIRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNS  +D K  DEE+  DKMEDDMFLRCIE
Sbjct: 1234 RIRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIE 1267



 Score =  183 bits (464), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 112/170 (65%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ L++ +FE
Sbjct: 834 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLANDEFE 893

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             YRFDPSNER LRR+F EDV++ELM S DVISELE+E                      
Sbjct: 894 RGYRFDPSNERHLRRVFTEDVVKELMNSADVISELERE---------------------- 931

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE L +DR+++R+ F SG+  VVLPCNL  +I+  Q+
Sbjct: 932 -------------WELLKKDRDSMRQTFPSGDDKVVLPCNLERMIWNAQK 968



 Score =  170 bits (430), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 758  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 817

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 818  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 859



 Score =  159 bits (403), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1355 SVEKEMNQVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1414

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1415 DVLMDAASHAEVDPMRG 1431



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  I+GMDPK+ARPDWM+ TVLPVPPLSVRPAVVM+GSARNQ+ + + L
Sbjct: 207 EECFIMGMDPKYARPDWMIATVLPVPPLSVRPAVVMYGSARNQDDLTHKL 256



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMT+RDVF++K
Sbjct: 491  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTRRDVFIEK 533


>gi|324120520|dbj|BAJ78651.1| RNA polymerase II largest subunit [Epiophlebia superstes]
          Length = 1922

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/509 (74%), Positives = 404/509 (79%), Gaps = 28/509 (5%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED LSKQAN+NATLLFQCLVRSTLCTK V+E++RLSSEAFEWL+GEIE RFQQAQ  
Sbjct: 999  VAGEDALSKQANQNATLLFQCLVRSTLCTKCVSEDFRLSSEAFEWLIGEIETRFQQAQCQ 1058

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1059 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1118

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1119 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIGEDQEFVN 1170

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFGDDLNCIFNDDNAE+
Sbjct: 1171 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINTGFGDDLNCIFNDDNAER 1230

Query: 1180 LVLRIRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYM 1234
            LVLRIRIMNSD++K       DEED VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYM
Sbjct: 1231 LVLRIRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYM 1290

Query: 1235 HLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVL 1294
            HLPQTDSKKRI++TESGEFKAIA+WLLETDGTSLM+VLSERDVDPVRTFSNDICEIF VL
Sbjct: 1291 HLPQTDSKKRIVVTESGEFKAIAEWLLETDGTSLMRVLSERDVDPVRTFSNDICEIFSVL 1350

Query: 1295 GIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1354
            GIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR
Sbjct: 1351 GIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1410

Query: 1355 CSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP-- 1412
            CSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTG FDLLLDAEKC+ GIEIP  
Sbjct: 1411 CSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGAFDLLLDAEKCRGGIEIPVM 1470

Query: 1413 LATGMMGGPAGMFFGSAATPSSIPGPPAW 1441
            L  GMM G  GM F +AATP+S P    W
Sbjct: 1471 LGAGMMLGTGGMMFANAATPTSSPNRTPW 1499



 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/443 (79%), Positives = 366/443 (82%), Gaps = 50/443 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILM LPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVNM RTHSTHPDDED G
Sbjct: 532 KEQMMNILMHLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDDEDDG 591

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTVV
Sbjct: 592 PYCWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVV 651

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 652 NNWLLLEG----------------------------------------------HSIGIG 665

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 666 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 725

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 726 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 785

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 786 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 845

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDP+NER  
Sbjct: 846 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFERKFKFDPTNER-N 904

Query: 492 LRNVSS---LRRVVNSKPLLIGC 511
           LR V +   LR V      +IG 
Sbjct: 905 LRRVFAEDVLREVSGGSSDIIGA 927



 Score =  253 bits (646), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 138/174 (79%), Positives = 146/174 (83%), Gaps = 8/174 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1343 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1402

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTG FDLLLDAEKC+
Sbjct: 1403 QDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGAFDLLLDAEKCR 1462

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWA-QSTPAYNAL-MSPG 939
             GIEIP  L  GMM G  GM F +AATP+S SP  TPW   S+P Y  L  SPG
Sbjct: 1463 GGIEIPVMLGAGMMLGTGGMMFANAATPTS-SPNRTPWVMSSSPDYGNLSWSPG 1515



 Score =  221 bits (562), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 113/157 (71%), Positives = 117/157 (74%), Gaps = 33/157 (21%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1142 LRKVTANTAIYYDPDPQNTVIGEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1201

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GFG                            DDLNCIFNDDNAE+LVL
Sbjct: 1202 LTMEQIAEKINTGFG----------------------------DDLNCIFNDDNAERLVL 1233

Query: 1649 RIRIMNSDDSKM-----QDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++K       DEED VDKMEDDMFLRCIE
Sbjct: 1234 RIRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIE 1270



 Score =  184 bits (468), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 98/171 (57%), Positives = 115/171 (67%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 833 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFE 892

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELM-GSGDVISELEKEMVDHFSWKQLRRIFNEDVLRE 710
            K++FDP+NER LRR+F EDVLRE+  GS D+I  LE+E      W+QL R         
Sbjct: 893 RKFKFDPTNERNLRRVFAEDVLREVSGGSSDIIGALERE------WEQLVR--------- 937

Query: 711 LMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                               DREALR+IF SG+S VVLPCNL  +I+ +Q+
Sbjct: 938 --------------------DREALRQIFPSGDSKVVLPCNLQRMIWNVQK 968



 Score =  171 bits (432), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 757  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 816

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 817  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 858



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1358 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1417

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1418 DVLMDAASHAEVDPMRG 1434



 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/43 (93%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 490  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 532



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  I+GMDPK+ARPDWM+VTVLPVPPL VRPAVVM+GSARNQ+ + + L
Sbjct: 206 EECFIMGMDPKYARPDWMIVTVLPVPPLPVRPAVVMYGSARNQDDLTHKL 255


>gi|119112579|ref|XP_317690.3| AGAP007810-PA [Anopheles gambiae str. PEST]
 gi|116123421|gb|EAA12308.3| AGAP007810-PA [Anopheles gambiae str. PEST]
          Length = 1878

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/511 (72%), Positives = 401/511 (78%), Gaps = 30/511 (5%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG D+LSKQANENATLLFQCLVRSTLCTK VAE +RL++EAFEWL+GEIE RFQQAQ  
Sbjct: 1013 VAGTDRLSKQANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQCN 1072

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1073 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVF 1132

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1133 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVN 1184

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNA+K
Sbjct: 1185 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADK 1244

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMN D+   ++EE+ +DKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1245 LVLRIRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1304

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            D+KKRI+IT  GEFK I +WLLETDGTS+MKVLSERDVDPVRT+SNDICEIF VLGIEAV
Sbjct: 1305 DAKKRIVITPEGEFKPIGEWLLETDGTSMMKVLSERDVDPVRTYSNDICEIFSVLGIEAV 1364

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1365 RKSVEKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1424

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG 1419
            TVDVL DAAAHAE DPMRGVSENII+GQLPRMGTGCFDLLLDAEKCK G+EIP  T ++G
Sbjct: 1425 TVDVLNDAAAHAEVDPMRGVSENIILGQLPRMGTGCFDLLLDAEKCKLGMEIP-HTSILG 1483

Query: 1420 GPAGMFFGSAATP-------SSIPGPPAWYP 1443
            G  GMFFGSAATP       S+ PG   W P
Sbjct: 1484 G-TGMFFGSAATPSMTPWQQSATPGYGGWSP 1513



 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/432 (78%), Positives = 360/432 (83%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMPQP ILKPKPLWTGKQ+F+LIIPGNVNM RTHSTHPD+ED G
Sbjct: 547 KEQMMNLLMFLPTWDGKMPQPAILKPKPLWTGKQIFTLIIPGNVNMIRTHSTHPDEEDDG 606

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHI FLELGHE+ GRFYGNIQTVV
Sbjct: 607 PYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHIVFLELGHEIAGRFYGNIQTVV 666

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 667 NNWLLLEG----------------------------------------------HSIGIG 680

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAKEDVI VIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 681 DTIADPQTYAEIQRAIKKAKEDVIGVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 740

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 741 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 800

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTP+EF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 801 IKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 860

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE +YRFDP+NER  
Sbjct: 861 VMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKVFEKRYRFDPTNER-- 918

Query: 492 LRNVSSLRRVVN 503
                +LRR+ N
Sbjct: 919 -----TLRRIFN 925



 Score =  286 bits (731), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 146/190 (76%), Positives = 155/190 (81%), Gaps = 13/190 (6%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1352 ICEIFSVLGIEAVRKSVEKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1411

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVL DAAAHAE DPMRGVSENII+GQLPRMGTGCFDLLLDAEKCK
Sbjct: 1412 QDTGALMRCSFEETVDVLNDAAAHAEVDPMRGVSENIILGQLPRMGTGCFDLLLDAEKCK 1471

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNAL--MSPGAAMTPGG 946
             G+EIP  T ++GG  GMFFGSAATPS     MTPW QS TP Y       P + MTPGG
Sbjct: 1472 LGMEIP-HTSILGG-TGMFFGSAATPS-----MTPWQQSATPGYGGWSPSGPASGMTPGG 1524

Query: 947  PGFSPSVAGE 956
            P FSPS   +
Sbjct: 1525 PSFSPSAQSD 1534



 Score =  216 bits (550), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/152 (71%), Positives = 115/152 (75%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1156 LRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1215

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNA+KLVL
Sbjct: 1216 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNADKLVL 1247

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN D+   ++EE+ +DKMEDDMFLRCIE
Sbjct: 1248 RIRIMNEDNKFQENEEENMDKMEDDMFLRCIE 1279



 Score =  182 bits (462), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 113/170 (66%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 848 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKVFE 907

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YRFDP+NER LRRIFNEDV++EL  +  VI E+E                        
Sbjct: 908 KRYRFDPTNERTLRRIFNEDVIKELTETSSVIQEIE------------------------ 943

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       E+E+L  DREALR+IF +G+S VVLPCNL  +I+ +Q+
Sbjct: 944 -----------AEYEQLLRDREALRQIFPNGDSKVVLPCNLQRMIWNVQK 982



 Score =  167 bits (422), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP+EF+FHAM
Sbjct: 772  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAM 831

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 832  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 873



 Score =  159 bits (401), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 74/77 (96%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1367 SVEKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1426

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL DAAAHAE DPMRG
Sbjct: 1427 DVLNDAAAHAEVDPMRG 1443



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +ENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 505  IENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 547



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGMDPKFARPDWM++TVLPVPPL+VRPAVVM G+ +NQ+ + + L
Sbjct: 221 EECFVLGMDPKFARPDWMIITVLPVPPLAVRPAVVMFGATKNQDDLTHKL 270


>gi|324120542|dbj|BAJ78662.1| RNA polymerase II largest subunit [Oyamia lugubris]
          Length = 1742

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/503 (75%), Positives = 404/503 (80%), Gaps = 22/503 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED LSK ANENATLLFQCL+RSTLC+K V+E++RLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 1018 VAGEDHLSKMANENATLLFQCLIRSTLCSKCVSEDFRLSSEAFEWLIGEIETRFQQAQVA 1077

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1078 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1137

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1138 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIQEDQEFVN 1189

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1190 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1249

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNS+D   Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1250 LVLRIRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1309

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITESGEFKAIA+WLLETDGTS+MKVLSERDVDP+RTFSNDICEIF VLGIEAV
Sbjct: 1310 DSKKRIVITESGEFKAIAEWLLETDGTSMMKVLSERDVDPIRTFSNDICEIFSVLGIEAV 1369

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMNTVL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1370 RKSVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1429

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT-GMM 1418
            TVDVLMDAAAHAE DPM GVSENIIMGQLPR+GTGCFDLLLD EKCK GIEIP++    M
Sbjct: 1430 TVDVLMDAAAHAEMDPMAGVSENIIMGQLPRLGTGCFDLLLDEEKCKAGIEIPMSVGAGM 1489

Query: 1419 GGPAGMFFGSAATPSSIPGPPAW 1441
             G AGMFFGSAATPS  P    W
Sbjct: 1490 MGGAGMFFGSAATPSMSPQMTPW 1512



 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/458 (76%), Positives = 376/458 (82%), Gaps = 56/458 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVNM RTHSTHPDDED G
Sbjct: 552 KEQMMNLLMFLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDDEDEG 611

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC+LELGHEVCG+FYGNIQTV+
Sbjct: 612 PYKWISPGDTKVMVEHGELMMGILCKKTLGTSAGSLLHICYLELGHEVCGQFYGNIQTVI 671

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 672 NNWLLLEG----------------------------------------------HSIGIG 685

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADP TY+EIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 686 DTIADPNTYMEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 745

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 746 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 805

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 806 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 865

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGL GE VE Q + TV LS+K FE +++FDP+NER  
Sbjct: 866 VMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTVKLSNKAFERRFKFDPTNER-- 923

Query: 492 LRNVSSLRRVVNSKPL--LIGCWKLTS-VEKEMNTVLQ 526
                 LRRV N   L  L+G  ++ S +EKE + + +
Sbjct: 924 -----HLRRVFNEDVLRELMGSGEVISDLEKEWDQLCK 956



 Score =  289 bits (739), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 171/316 (54%), Positives = 203/316 (64%), Gaps = 29/316 (9%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S D   + E+E VD        R    ++L ++   G  
Sbjct: 1238 LNCIFNDDNAEKLVLRIRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQG-- 1295

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVV----LPCNLMEVIFILQRW-----KLWGN 767
            I  + K +  L +     R + + SGE   +    L  +   ++ +L        + + N
Sbjct: 1296 IEAIGKVYMHLPQTDSKKRIVITESGEFKAIAEWLLETDGTSMMKVLSERDVDPIRTFSN 1355

Query: 768  ENLRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 824
            +    +C+I  VL   +VRKSVEKEMNTVL FYGLYVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 1356 D----ICEIFSVLGIEAVRKSVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITR 1411

Query: 825  HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
            HGINRQDTGALMRCSFEETVDVLMDAAAHAE DPM GVSENIIMGQLPR+GTGCFDLLLD
Sbjct: 1412 HGINRQDTGALMRCSFEETVDVLMDAAAHAEMDPMAGVSENIIMGQLPRLGTGCFDLLLD 1471

Query: 885  AEKCKDGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSP----GA 940
             EKCK GIEIP++ G         F  +A   SMSPQMTPW  STPAY ++ SP    G+
Sbjct: 1472 EEKCKAGIEIPMSVGAGMMGGAGMFFGSAATPSMSPQMTPWNHSTPAYGSVWSPGNMLGS 1531

Query: 941  AMTPGGPGFSPSVAGE 956
             MTPGGP FSPS A +
Sbjct: 1532 GMTPGGPSFSPSGASD 1547



 Score =  224 bits (571), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 113/152 (74%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1161 LRKVTANTAIYYDPDPQNTVIQEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1220

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1221 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1252

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNS+D   Q+EE+ VDKMEDDMFLRCIE
Sbjct: 1253 RIRIMNSEDKFQQEEEETVDKMEDDMFLRCIE 1284



 Score =  201 bits (510), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 102/170 (60%), Positives = 119/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGL GE VE Q + TV LS+K FE
Sbjct: 853 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTVKLSNKAFE 912

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FDP+NER LRR+FNEDVLRELMGSG+VIS+LEKE                      
Sbjct: 913 RRFKFDPTNERHLRRVFNEDVLRELMGSGEVISDLEKE---------------------- 950

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        W++LC+DRE LR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 951 -------------WDQLCKDRETLRQIFPSGESKVVLPCNLNRMIWNVQK 987



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 777  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 836

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 837  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 878



 Score =  157 bits (398), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 74/77 (96%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1372 SVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1431

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE DPM G
Sbjct: 1432 DVLMDAAAHAEMDPMAG 1448



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE   LGMDP+FARPDWM+VTVLPVPPLSVRPAVVM+GSARNQ+ + + L
Sbjct: 226 EECRTLGMDPQFARPDWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKL 275



 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 510  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 552


>gi|324120552|dbj|BAJ78667.1| RNA polymerase II largest subunit [Blattella nipponica]
          Length = 1598

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/473 (77%), Positives = 388/473 (82%), Gaps = 21/473 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D LSKQANENATLLFQCLVRSTLCTK V+E +RLSS AFEWL+GEIE RFQQAQV 
Sbjct: 1017 VAGDDHLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSVAFEWLIGEIETRFQQAQVS 1076

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1136

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1137 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVN 1188

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1189 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1248

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1249 LVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1308

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRII+T++GEFKAIA+WLLETDGTS+MKVLSERDVD  RTFSNDICEIF VLGIEAV
Sbjct: 1309 DSKKRIIVTDTGEFKAIAEWLLETDGTSMMKVLSERDVDTNRTFSNDICEIFSVLGIEAV 1368

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1369 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1428

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 1412
            TVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP
Sbjct: 1429 TVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDLLLDAEKCKAGIEIP 1481



 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/426 (80%), Positives = 363/426 (85%), Gaps = 47/426 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLPIWDGKMPQP I+KPKPLWTGKQVFSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 551 KEQMMNLLMFLPIWDGKMPQPAIMKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDDG 610

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEVCG+FYGNIQTVV
Sbjct: 611 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGQFYGNIQTVV 670

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 671 NNWLLLEG----------------------------------------------HSIGIG 684

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 685 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 744

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 745 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 804

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 805 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 864

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS++ FE K++FDP+NER  
Sbjct: 865 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNRAFEKKFKFDPTNER-Y 923

Query: 492 LRNVSS 497
           LR + S
Sbjct: 924 LRRIFS 929



 Score =  282 bits (721), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 173/313 (55%), Positives = 204/313 (65%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S D   + E+E VD        R    ++L ++   G  
Sbjct: 1237 LNCIFNDDNAEKLVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQG-- 1294

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVV----LPCNLMEVIFILQRWKLWGNENLRF 772
            I  + K +  L +     R I + +GE   +    L  +   ++ +L    +  N     
Sbjct: 1295 IEAIGKVYMHLPQTDSKKRIIVTDTGEFKAIAEWLLETDGTSMMKVLSERDVDTNRTFSN 1354

Query: 773  -LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
             +C+I  VL   +VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN
Sbjct: 1355 DICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1414

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKC
Sbjct: 1415 RQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDLLLDAEKC 1474

Query: 889  KDGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSP----GAAMT 943
            K GIEIP++ G      G  F  +A   SMSP MTPWAQ +TPAY +  SP    G+  T
Sbjct: 1475 KAGIEIPMSVGAGMMGGGGMFFGSAATPSMSPHMTPWAQGATPAYVSSWSPGNMLGSGAT 1534

Query: 944  PGGPGFSPSVAGE 956
            PGGP FSPS A +
Sbjct: 1535 PGGPSFSPSGASD 1547



 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1160 LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1219

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1220 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1251

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K QDEE+ VDKMEDDMFLRCIE
Sbjct: 1252 RIRIMNSDDNKFQDEEETVDKMEDDMFLRCIE 1283



 Score =  202 bits (514), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 103/170 (60%), Positives = 120/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS++ FE
Sbjct: 852 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNRAFE 911

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIF+EDVL+ELMGSGDVISELE+E                      
Sbjct: 912 KKFKFDPTNERYLRRIFSEDVLKELMGSGDVISELERE---------------------- 949

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE+L +DREALR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 950 -------------WEQLVKDREALRQIFPSGESKVVLPCNLQRMIWNVQK 986



 Score =  171 bits (432), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 776  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 835

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 836  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 877



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1371 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1431 DVLMDAASHAEVDPMRG 1447



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/50 (80%), Positives = 45/50 (90%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARPDWM+VTVLPVPPLSVRPAVVM+GSARNQ+ + + L
Sbjct: 225 EECYILGMDPKFARPDWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKL 274



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VEN+HVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 509  VENLHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 551


>gi|324120566|dbj|BAJ78674.1| RNA polymerase II largest subunit [Uroleucon nigrotuberculatum]
          Length = 1862

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/504 (74%), Positives = 403/504 (79%), Gaps = 23/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED+LS++AN+NATLLFQCLVRSTLCTKLV+E +RLSSEAFEWL+GEIENRF+QAQ  
Sbjct: 1016 VAGEDELSQKANKNATLLFQCLVRSTLCTKLVSERFRLSSEAFEWLIGEIENRFKQAQAQ 1075

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1076 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1135

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1136 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIREDQEFVN 1187

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDP+RISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNA+K
Sbjct: 1188 VYYEMPDFDPSRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNADK 1247

Query: 1180 LVLRIRIMNSDDSKMQ--DEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1237
            L+LRIRIMN +D KM   D+ED  DKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLP
Sbjct: 1248 LILRIRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLP 1307

Query: 1238 QTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1297
            QTD+KKRIIIT++GEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIE
Sbjct: 1308 QTDAKKRIIITDTGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIE 1367

Query: 1298 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1357
            AVRKSVEKEMNTVL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF
Sbjct: 1368 AVRKSVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1427

Query: 1358 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM 1417
            EETVDVL+DAAAHAE DPMRGVSENIIMGQLPRMGTGCFDLLLD+EK KDGIEIP+  G 
Sbjct: 1428 EETVDVLLDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDSEKAKDGIEIPMDNGY 1487

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            MG  AG  F +A TPS  P    W
Sbjct: 1488 MGMGAGGMFMAAGTPSMSPAMTPW 1511



 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/418 (80%), Positives = 356/418 (85%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LM LPIWDGKMP PCILKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPD+ED+G
Sbjct: 550 KEQMMNLLMHLPIWDGKMPTPCILKPKPLWTGKQLFSLIIPGNVNLIRTHSTHPDEEDNG 609

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCK +LGTS+GSLLHICFLELGHEVCGRFYGNIQTVV
Sbjct: 610 PYKWISPGDTKVMVEHGELVMGILCKSTLGTSAGSLLHICFLELGHEVCGRFYGNIQTVV 669

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 670 NNWLLYEG----------------------------------------------HSIGIG 683

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 684 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 743

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+G+KGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 744 KTGGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 803

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 804 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 863

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMVHYD TVRNSVGQLIQLRYGEDGL GEAVE Q I T+  SHKKFE +++FD SNER
Sbjct: 864 VMVHYDGTVRNSVGQLIQLRYGEDGLSGEAVEFQSIATIEPSHKKFEAEFKFDISNER 921



 Score =  275 bits (704), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 148/190 (77%), Positives = 157/190 (82%), Gaps = 7/190 (3%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMNTVL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1357 ICEIFSVLGIEAVRKSVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1416

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVL+DAAAHAE DPMRGVSENIIMGQLPRMGTGCFDLLLD+EK K
Sbjct: 1417 QDTGALMRCSFEETVDVLLDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDSEKAK 1476

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPG--AAMTPGG 946
            DGIEIP+  G MG  AG  F +A TP SMSP MTPW Q STP Y    S    A MTPGG
Sbjct: 1477 DGIEIPMDNGYMGMGAGGMFMAAGTP-SMSPAMTPWDQTSTPVYQNSWSSSLEAGMTPGG 1535

Query: 947  PGFSPSVAGE 956
            PGFSP+ + E
Sbjct: 1536 PGFSPAGSSE 1545



 Score =  222 bits (565), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 112/154 (72%), Positives = 117/154 (75%), Gaps = 30/154 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDP+RISPWLLRIELDRKRMTDKK
Sbjct: 1159 LRKVTANTAIYYDPDPQNTVIREDQEFVNVYYEMPDFDPSRISPWLLRIELDRKRMTDKK 1218

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTMEAISEKINAGFG                            DDLNCIFNDDNA+KL+L
Sbjct: 1219 LTMEAISEKINAGFG----------------------------DDLNCIFNDDNADKLIL 1250

Query: 1649 RIRIMNSDDSKMQ--DEEDAVDKMEDDMFLRCIE 1680
            RIRIMN +D KM   D+ED  DKMEDDMFLRCIE
Sbjct: 1251 RIRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIE 1284



 Score =  184 bits (467), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 97/170 (57%), Positives = 114/170 (67%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGL GEAVE Q I T+  SHKKFE
Sbjct: 851 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLSGEAVEFQSIATIEPSHKKFE 910

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER +R+IFNEDVL++L GS D ++ELE+E      W+Q             
Sbjct: 911 AEFKFDISNERHMRKIFNEDVLKDLTGSNDSVTELERE------WEQ------------- 951

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                           L  DR+ LREIF SGES VVLPCNL  +I+ +Q+
Sbjct: 952 ----------------LTNDRDTLREIFPSGESKVVLPCNLKRMIWNVQK 985



 Score =  170 bits (430), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 775  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 834

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 835  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 876



 Score =  160 bits (404), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1372 SVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1431

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL+DAAAHAE DPMRG
Sbjct: 1432 DVLLDAAAHAEVDPMRG 1448



 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTA+RKMTKRDVFL+K
Sbjct: 508  VENIHITPRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFLEK 550



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE +I+GMDPKFARPDWM++TVLPVPPL VRPA+VM GS RNQ+ + + L
Sbjct: 224 EEVVIMGMDPKFARPDWMVLTVLPVPPLPVRPAIVMFGSMRNQDDLTHKL 273


>gi|324120536|dbj|BAJ78659.1| RNA polymerase II largest subunit [Nomadacris japonica]
          Length = 1659

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/503 (75%), Positives = 405/503 (80%), Gaps = 22/503 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED LSKQANENATLLFQCLVRS LCTK V+E YRLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1017 VAGEDHLSKQANENATLLFQCLVRSILCTKSVSEEYRLSTEAFEWLIGEIETRFQQAQCS 1076

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1136

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1137 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVN 1188

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            +YYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1189 IYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1248

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQGIEAIGKVYMHLPQT
Sbjct: 1249 LVLRIRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGIEAIGKVYMHLPQT 1308

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1309 DSKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAV 1368

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1369 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1428

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT-GMM 1418
            TVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLDA+KCK GIEIP++    M
Sbjct: 1429 TVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDADKCKAGIEIPMSVGAGM 1488

Query: 1419 GGPAGMFFGSAATPSSIPGPPAW 1441
             G AGMFFGSAATPS  P    W
Sbjct: 1489 MGGAGMFFGSAATPSMSPQMTPW 1511



 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/452 (77%), Positives = 373/452 (82%), Gaps = 56/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLPIWDGKMPQP ILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 551 KEQMMNLLMFLPIWDGKMPQPAILKPKPLWTGKQLFSLIIPGNVNMIRTHSTHPDDEDDG 610

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEVCG+FYGNIQTVV
Sbjct: 611 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGQFYGNIQTVV 670

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 671 NNWLLLEG----------------------------------------------HSIGIG 684

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAKEDVIEVI KAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 685 DTIADPQTYTEIQKAIKKAKEDVIEVIHKAHNMELEPTPGNTLRQTFENQVNRILNDARD 744

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 745 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 804

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 805 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 864

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDP+NER  
Sbjct: 865 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKTFEKKFKFDPTNER-- 922

Query: 492 LRNVSSLRRVVNSKPL--LIGCWKLTS-VEKE 520
                 LRR+ +   L  L+G  ++ S +EKE
Sbjct: 923 -----HLRRIFHEDVLRELMGSSEVISELEKE 949



 Score =  284 bits (726), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 144/190 (75%), Positives = 157/190 (82%), Gaps = 6/190 (3%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1356 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1415

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLDA+KCK
Sbjct: 1416 QDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDADKCK 1475

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSP--GAAMTPGG 946
             GIEIP++ G         F  +A   SMSPQMTPW Q +TPAYN+  SP  G+ MTPGG
Sbjct: 1476 AGIEIPMSVGAGMMGGAGMFFGSAATPSMSPQMTPWNQGTTPAYNSGWSPVLGSGMTPGG 1535

Query: 947  PGFSPSVAGE 956
            P FSPS A +
Sbjct: 1536 PCFSPSGASD 1545



 Score =  225 bits (573), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 112/152 (73%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVN+YYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1160 LRKVTANTAIYYDPDPQNTVIAEDQEFVNIYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1219

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1220 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1251

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++K Q+E + VDKMEDDMFLRCIE
Sbjct: 1252 RIRIMNSDENKFQEEGETVDKMEDDMFLRCIE 1283



 Score =  200 bits (509), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 104/170 (61%), Positives = 119/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 852 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKTFE 911

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIF+EDVLRELMGS +VISELEKE      W               
Sbjct: 912 KKFKFDPTNERHLRRIFHEDVLRELMGSSEVISELEKE------W--------------- 950

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                         E+LC DREALR+IF SGES VVLPCNL  +I+ +++
Sbjct: 951 --------------EQLCRDREALRQIFPSGESKVVLPCNLQRMIWNVKK 986



 Score =  171 bits (432), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 776  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 835

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 836  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 877



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1371 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1431 DVLMDAASHAEVDPMRG 1447



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARPDWM+ TVLPVPPLSVRPAVVM+GSARNQ+ + + L
Sbjct: 225 EECFILGMDPKFARPDWMICTVLPVPPLSVRPAVVMYGSARNQDDLTHKL 274



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +EN+H+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 509  IENLHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 551


>gi|194245541|gb|ACF35380.1| RNA polymerase II large subunit [Macrogyrus oblongus]
          Length = 554

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/433 (80%), Positives = 365/433 (84%), Gaps = 53/433 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++EQMMN+LMFLPIWDGKMP+P ILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED 
Sbjct: 18  DKEQMMNLLMFLPIWDGKMPRPAILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDD 77

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEVCGRFYGNIQTV
Sbjct: 78  GPYRWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGRFYGNIQTV 137

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNNWLLLEG                                              HSIGI
Sbjct: 138 VNNWLLLEG----------------------------------------------HSIGI 151

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 152 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 211

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 212 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 271

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 272 FIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 331

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE K+RFDPSNER 
Sbjct: 332 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFEKKFRFDPSNER- 390

Query: 491 TLRNVSSLRRVVN 503
                  LRR+ N
Sbjct: 391 ------YLRRIFN 397



 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 107/170 (62%), Positives = 120/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 320 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFE 379

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDPSNER LRRIFNED++R+LMGSGDVISELE E      W+QLRR          
Sbjct: 380 KKFRFDPSNERYLRRIFNEDIIRQLMGSGDVISELELE------WEQLRR---------- 423

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR+IF +GES VVLPCNL  +I+ +Q+
Sbjct: 424 -------------------DREALRQIFPNGESKVVLPCNLQRMIWNVQK 454



 Score =  170 bits (430), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 244  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 303

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 304  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 345



 Score =  108 bits (270), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/58 (86%), Positives = 55/58 (94%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ 1010
            VAGED+LSKQANENATLLFQCLVRSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ
Sbjct: 485  VAGEDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQ 542


>gi|324120530|dbj|BAJ78656.1| RNA polymerase II largest subunit [Aposthonia japonica]
          Length = 1697

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/503 (75%), Positives = 404/503 (80%), Gaps = 22/503 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V GED+LSKQANENATLLFQCLVRSTLCTK V+E++RLSSEAFEWL+GEIE RFQQAQ  
Sbjct: 994  VDGEDRLSKQANENATLLFQCLVRSTLCTKCVSEDFRLSSEAFEWLIGEIETRFQQAQCN 1053

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1054 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVF 1113

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1114 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVITEDQEFVN 1165

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1166 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1225

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQT
Sbjct: 1226 LVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQT 1285

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            D+KKRIIIT++GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1286 DAKKRIIITDNGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAV 1345

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1346 RKSVEKEMNAVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1405

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT-GMM 1418
            TVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLDAEKCK GIEIP++    M
Sbjct: 1406 TVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCKAGIEIPMSVGAGM 1465

Query: 1419 GGPAGMFFGSAATPSSIPGPPAW 1441
             G AGMFFGSA TPS  P    W
Sbjct: 1466 MGGAGMFFGSAGTPSMSPQLTPW 1488



 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/452 (77%), Positives = 373/452 (82%), Gaps = 56/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVN+ RTHSTHPDDED G
Sbjct: 528 KEQMMNILMFLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNLIRTHSTHPDDEDEG 587

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGH+VCG+FYGNIQTV+
Sbjct: 588 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHDVCGQFYGNIQTVI 647

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 648 NNWLLYEG----------------------------------------------HSIGIG 661

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 662 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 721

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 722 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 781

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 782 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 841

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q I TV LS+K FE +++FDP+NER  
Sbjct: 842 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQYIQTVKLSNKAFERRFKFDPTNER-- 899

Query: 492 LRNVSSLRRVVNSKPL--LIGCWK-LTSVEKE 520
                 LRR+ N   L  L+G  + +  +EKE
Sbjct: 900 -----HLRRIFNEDVLRELMGSGEVIQELEKE 926



 Score =  280 bits (716), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 169/317 (53%), Positives = 205/317 (64%), Gaps = 30/317 (9%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S D   + E+E VD        R    ++L ++   G  
Sbjct: 1214 LNCIFNDDNAEKLVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQG-- 1271

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVV----LPCNLMEVIFILQRW-----KLWGN 767
            I  + K +  L +     R I + +GE   +    L  +   ++ +L        + + N
Sbjct: 1272 IEAIAKVYMHLPQTDAKKRIIITDNGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSN 1331

Query: 768  ENLRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 824
            +    +C+I  VL   +VRKSVEKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 1332 D----ICEIFSVLGIEAVRKSVEKEMNAVLSFYGLYVNYRHLALLCDVMTAKGHLMAITR 1387

Query: 825  HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
            HGINRQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLD
Sbjct: 1388 HGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLD 1447

Query: 885  AEKCKDGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSP----G 939
            AEKCK GIEIP++ G         F  +A   SMSPQ+TPW Q STP+Y+++ SP    G
Sbjct: 1448 AEKCKAGIEIPMSVGAGMMGGAGMFFGSAGTPSMSPQLTPWPQGSTPSYSSMWSPGNVLG 1507

Query: 940  AAMTPGGPGFSPSVAGE 956
            + MTPGGP FSPS A +
Sbjct: 1508 SGMTPGGPSFSPSGASD 1524



 Score =  231 bits (589), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1137 LRKVTANTAIYYDPDPQNTVITEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1196

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1197 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1228

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K QDEE+ VDKMEDDMFLRCIE
Sbjct: 1229 RIRIMNSDDNKFQDEEETVDKMEDDMFLRCIE 1260



 Score =  201 bits (510), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 103/170 (60%), Positives = 118/170 (69%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q I TV LS+K FE
Sbjct: 829 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQYIQTVKLSNKAFE 888

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FDP+NER LRRIFNEDVLRELMGSG+VI ELEKE                      
Sbjct: 889 RRFKFDPTNERHLRRIFNEDVLRELMGSGEVIQELEKE---------------------- 926

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE+L +DR+ALR+IF  GE+ VVLPCNL  +I+ +Q+
Sbjct: 927 -------------WEQLSKDRDALRQIFPGGENKVVLPCNLTRMIWNVQK 963



 Score =  171 bits (432), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 753  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 812

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 813  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 854



 Score =  158 bits (399), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 74/77 (96%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1348 SVEKEMNAVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1407

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1408 DVLMDAASHAEVDPMRG 1424



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/50 (80%), Positives = 45/50 (90%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARPDWM+VTVLPVPPLSVRPAVVM+GSARNQ+ + + L
Sbjct: 202 EECFILGMDPKFARPDWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKL 251



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VEN+HVTPRQIITPQ N+PVMGIVQDTL AVRKMTKRDVFL+K
Sbjct: 486  VENLHVTPRQIITPQANQPVMGIVQDTLVAVRKMTKRDVFLEK 528


>gi|193700005|ref|XP_001943054.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Acyrthosiphon pisum]
          Length = 1862

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/504 (74%), Positives = 400/504 (79%), Gaps = 23/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG D+LSK+AN NATLLFQCLVRSTLCTKLV+E +RLSSEAFEWL+GEIENRF+QAQ  
Sbjct: 1016 VAGGDELSKKANHNATLLFQCLVRSTLCTKLVSERFRLSSEAFEWLIGEIENRFKQAQAQ 1075

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1076 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1135

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1136 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIREDQEFVN 1187

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDP+RISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNA+K
Sbjct: 1188 VYYEMPDFDPSRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNADK 1247

Query: 1180 LVLRIRIMNSDDSKMQ--DEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1237
            L+LRIRIMN +D KM   D+ED  DKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLP
Sbjct: 1248 LILRIRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLP 1307

Query: 1238 QTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1297
            QTD+KKRIIIT++GEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIE
Sbjct: 1308 QTDAKKRIIITDTGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIE 1367

Query: 1298 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1357
            AVRKSVEKEMNTVL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF
Sbjct: 1368 AVRKSVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1427

Query: 1358 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM 1417
            EETVDVL+DAAAHAE DPMRGVSENIIMGQLPRMGTGCFDLLLD+EK KDGIEIP+  G 
Sbjct: 1428 EETVDVLLDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDSEKAKDGIEIPMDNGY 1487

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            MG  AG  F  A TPS  P    W
Sbjct: 1488 MGMGAGGMFMGAGTPSMSPAMTPW 1511



 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/418 (80%), Positives = 356/418 (85%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LM LPIWDGKMP PCILKPKP+WTGKQ+FSLIIPGNVN+ RTHSTHPD+ED+G
Sbjct: 550 KEQMMNLLMHLPIWDGKMPTPCILKPKPMWTGKQLFSLIIPGNVNLIRTHSTHPDEEDNG 609

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCK +LGTS+GSLLHICFLELGHEVCGRFYGNIQTVV
Sbjct: 610 PYKWISPGDTKVMVEHGELVMGILCKSTLGTSAGSLLHICFLELGHEVCGRFYGNIQTVV 669

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 670 NNWLLYEG----------------------------------------------HSIGIG 683

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 684 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 743

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+G+KGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 744 KTGGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 803

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 804 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 863

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMVHYD TVRNSVGQLIQLRYGEDGL GEAVE Q I T+  SHKKFE +++FD SNER
Sbjct: 864 VMVHYDGTVRNSVGQLIQLRYGEDGLSGEAVEFQSIATIEPSHKKFEAEFKFDVSNER 921



 Score =  275 bits (703), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 148/190 (77%), Positives = 156/190 (82%), Gaps = 7/190 (3%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMNTVL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1357 ICEIFSVLGIEAVRKSVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1416

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVL+DAAAHAE DPMRGVSENIIMGQLPRMGTGCFDLLLD+EK K
Sbjct: 1417 QDTGALMRCSFEETVDVLLDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDSEKAK 1476

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPG--AAMTPGG 946
            DGIEIP+  G MG  AG  F  A TP SMSP MTPW Q STP Y    S    A MTPGG
Sbjct: 1477 DGIEIPMDNGYMGMGAGGMFMGAGTP-SMSPAMTPWDQTSTPVYQNSWSSSLEAGMTPGG 1535

Query: 947  PGFSPSVAGE 956
            PGFSP+ + E
Sbjct: 1536 PGFSPAGSSE 1545



 Score =  222 bits (565), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 112/154 (72%), Positives = 117/154 (75%), Gaps = 30/154 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDP+RISPWLLRIELDRKRMTDKK
Sbjct: 1159 LRKVTANTAIYYDPDPQNTVIREDQEFVNVYYEMPDFDPSRISPWLLRIELDRKRMTDKK 1218

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTMEAISEKINAGFG                            DDLNCIFNDDNA+KL+L
Sbjct: 1219 LTMEAISEKINAGFG----------------------------DDLNCIFNDDNADKLIL 1250

Query: 1649 RIRIMNSDDSKMQ--DEEDAVDKMEDDMFLRCIE 1680
            RIRIMN +D KM   D+ED  DKMEDDMFLRCIE
Sbjct: 1251 RIRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIE 1284



 Score =  184 bits (467), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 97/170 (57%), Positives = 114/170 (67%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGL GEAVE Q I T+  SHKKFE
Sbjct: 851 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLSGEAVEFQSIATIEPSHKKFE 910

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD SNER +R+IFNEDVL++L GS D ++ELE+E      W+Q             
Sbjct: 911 AEFKFDVSNERHMRKIFNEDVLKDLTGSNDSVTELERE------WEQ------------- 951

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                           L  DR+ LREIF SGES VVLPCNL  +I+ +Q+
Sbjct: 952 ----------------LTTDRDTLREIFPSGESKVVLPCNLKRMIWNVQK 985



 Score =  169 bits (429), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 775  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 834

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 835  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 876



 Score =  160 bits (404), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1372 SVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1431

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL+DAAAHAE DPMRG
Sbjct: 1432 DVLLDAAAHAEVDPMRG 1448



 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTA+RKMTKRDVFL+K
Sbjct: 508  VENIHITPRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFLEK 550



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE +I+GMDPKFARPDWM++TVLPVPPL VRPA+VM GS RNQ+ + + L
Sbjct: 224 EEVVIMGMDPKFARPDWMVLTVLPVPPLPVRPAIVMFGSMRNQDDLTHKL 273


>gi|194245543|gb|ACF35381.1| RNA polymerase II large subunit [Amphizoa lecontei]
          Length = 562

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/437 (79%), Positives = 366/437 (83%), Gaps = 53/437 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           N+EQMMNILMFLPIWDGKMP+P ILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED 
Sbjct: 18  NKEQMMNILMFLPIWDGKMPRPAILKPEPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDD 77

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEVCGRFYGNIQTV
Sbjct: 78  GPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGRFYGNIQTV 137

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           +N WLLLEG                                              HSIGI
Sbjct: 138 INTWLLLEG----------------------------------------------HSIGI 151

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 152 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 211

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 212 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 271

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 272 FIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 331

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE K+RFDPSNER 
Sbjct: 332 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFEKKFRFDPSNER- 390

Query: 491 TLRNVSSLRRVVNSKPL 507
                  LRR+ N + L
Sbjct: 391 ------YLRRIFNEEIL 401



 Score =  202 bits (515), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/170 (61%), Positives = 120/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 320 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFE 379

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDPSNER LRRIFNE++LR+LMGSGDVISELE+                       
Sbjct: 380 KKFRFDPSNERYLRRIFNEEILRQLMGSGDVISELER----------------------- 416

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW++L +DREALR+IF +GES VVLPCNL  +I+ +Q+
Sbjct: 417 ------------EWDQLSKDREALRQIFPTGESKVVLPCNLQRMIWNVQK 454



 Score =  170 bits (431), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 244  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 303

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 304  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 345



 Score =  105 bits (261), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/58 (81%), Positives = 55/58 (94%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ 1010
            VAG+D+LS+QANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ
Sbjct: 485  VAGDDRLSRQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQ 542


>gi|194245530|gb|ACF35374.1| RNA polymerase II large subunit [Tenomerga cinerea]
          Length = 553

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/437 (79%), Positives = 366/437 (83%), Gaps = 53/437 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           N+EQMMNILMFLPIWDGKMP+P ILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED 
Sbjct: 18  NKEQMMNILMFLPIWDGKMPRPAILKPEPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDD 77

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEVCGRFYGNIQTV
Sbjct: 78  GPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGRFYGNIQTV 137

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           +N WLLLEG                                              HSIGI
Sbjct: 138 INTWLLLEG----------------------------------------------HSIGI 151

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 152 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 211

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 212 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 271

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 272 FIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 331

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE K+RFDPSNER 
Sbjct: 332 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFEKKFRFDPSNER- 390

Query: 491 TLRNVSSLRRVVNSKPL 507
                  LRR+ N + L
Sbjct: 391 ------YLRRIFNEEIL 401



 Score =  202 bits (515), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/170 (61%), Positives = 120/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 320 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFE 379

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDPSNER LRRIFNE++LR+LMGSGDVISELE+                       
Sbjct: 380 KKFRFDPSNERYLRRIFNEEILRQLMGSGDVISELER----------------------- 416

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW++L +DREALR+IF +GES VVLPCNL  +I+ +Q+
Sbjct: 417 ------------EWDQLTKDREALRQIFPTGESKVVLPCNLQRMIWNVQK 454



 Score =  170 bits (431), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 244  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 303

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 304  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 345



 Score =  103 bits (257), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 58/65 (89%), Gaps = 2/65 (3%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D+LS+QANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GEIE RFQQA + 
Sbjct: 485  VAGDDRLSRQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQATM- 543

Query: 1013 ACVGQ 1017
             C G+
Sbjct: 544  -CPGE 547


>gi|328793442|ref|XP_623281.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
           [Apis mellifera]
          Length = 1883

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/432 (79%), Positives = 363/432 (84%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 669 NNWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 683 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDP+NER  
Sbjct: 863 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKFDPTNER-- 920

Query: 492 LRNVSSLRRVVN 503
                 LRR+ N
Sbjct: 921 -----YLRRIFN 927



 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/504 (72%), Positives = 389/504 (77%), Gaps = 44/504 (8%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D+LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 1015 VAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVS 1074

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1134

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1135 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVN 1186

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDP +ISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1187 VYYEMPDFDPNKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1246

Query: 1180 LVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
            LVLRIRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ
Sbjct: 1247 LVLRIRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1306

Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
            TD+KKRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA
Sbjct: 1307 TDAKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1366

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
            VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 
Sbjct: 1367 VRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF- 1425

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM- 1417
                                VSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+A G  
Sbjct: 1426 --------------------VSENIIMGQLPRIGTGCFDLLLDAEKCKVGIEIPMAVGAG 1465

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            + G AGMFFGS ATPS  P    W
Sbjct: 1466 VMGTAGMFFGSVATPSMSPQMTPW 1489



 Score =  249 bits (637), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 134/191 (70%), Positives = 143/191 (74%), Gaps = 29/191 (15%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1355 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1414

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSF                     VSENIIMGQLPR+GTGCFDLLLDAEKCK
Sbjct: 1415 QDTGALMRCSF---------------------VSENIIMGQLPRIGTGCFDLLLDAEKCK 1453

Query: 890  DGIEIPLATGM-MGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNA-LMSP--GAAMTPG 945
             GIEIP+A G  + G AGMFFGS ATP SMSPQMTPW  +TP Y A  MSP  G+ MTPG
Sbjct: 1454 VGIEIPMAVGAGVMGTAGMFFGSVATP-SMSPQMTPWMGATPGYGASSMSPALGSGMTPG 1512

Query: 946  GPGFSPSVAGE 956
            G  FSPS A +
Sbjct: 1513 GACFSPSGASD 1523



 Score =  224 bits (572), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 114/153 (74%), Positives = 118/153 (77%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDP +ISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPNKISPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1218 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1249

Query: 1649 RIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K QD EE+ VDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNSDDNKFQDSEEETVDKMEDDMFLRCIE 1282



 Score =  197 bits (502), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 101/170 (59%), Positives = 118/170 (69%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIFNED++RE+MGSG+VISELE+E      W+QL +          
Sbjct: 910 KKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELERE------WEQLNK---------- 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DR  LREIF SGES VVLPCNL  +I+ +Q+
Sbjct: 954 -------------------DRAVLREIFPSGESKVVLPCNLQRMIWNVQK 984



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 875



 Score =  121 bits (304), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/56 (98%), Positives = 55/56 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 571
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF
Sbjct: 1370 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1425



 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 53/64 (82%), Gaps = 1/64 (1%)

Query: 17  TSVYAWYVVPY-PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
           T+  AW ++ +   EES ILGMDPKFARPDWM+VTVLPVPPLSVRPAV+M+GSA+NQ+ +
Sbjct: 209 TAERAWEILKHITDEESFILGMDPKFARPDWMVVTVLPVPPLSVRPAVIMYGSAKNQDDL 268

Query: 76  MNIL 79
            + L
Sbjct: 269 THKL 272



 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 507  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 549


>gi|194245547|gb|ACF35383.1| RNA polymerase II large subunit [Asaphidion yukonense]
          Length = 562

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/435 (79%), Positives = 365/435 (83%), Gaps = 53/435 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           N+EQMMN+LMFLPIWDGKMP+P ILKP PLWTGKQVFSLIIPGNVNM RTHSTHPD+ED 
Sbjct: 18  NKEQMMNLLMFLPIWDGKMPRPAILKPCPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDD 77

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEVCGRFYGNIQTV
Sbjct: 78  GPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGRFYGNIQTV 137

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           +NNWLLLEG                                              HSIGI
Sbjct: 138 INNWLLLEG----------------------------------------------HSIGI 151

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADPQTY+EIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 152 GDTIADPQTYVEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 211

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 212 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 271

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 272 FIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 331

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE K+RFDPSNER 
Sbjct: 332 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFEKKFRFDPSNER- 390

Query: 491 TLRNVSSLRRVVNSK 505
                  LRR+ N +
Sbjct: 391 ------YLRRIFNEE 399



 Score =  200 bits (509), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 105/170 (61%), Positives = 120/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 320 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFE 379

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDPSNER LRRIFNE+++++LMGSGDVISELE+E      W+QL R          
Sbjct: 380 KKFRFDPSNERYLRRIFNEEIIKQLMGSGDVISELERE------WEQLSR---------- 423

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 424 -------------------DREALRQIFPSGESKVVLPCNLQRMIWNVQK 454



 Score =  170 bits (431), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 244  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 303

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 304  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 345



 Score =  104 bits (260), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/58 (82%), Positives = 54/58 (93%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ 1010
            VAGED+LSK ANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ
Sbjct: 485  VAGEDRLSKLANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQ 542


>gi|324120584|dbj|BAJ78683.1| RNA polymerase II largest subunit [Lucidina biplagiata]
          Length = 1685

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/453 (77%), Positives = 374/453 (82%), Gaps = 56/453 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           N+EQMMN+LMFLPIWDGKMP+P ILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED 
Sbjct: 545 NKEQMMNLLMFLPIWDGKMPRPAILKPQPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDD 604

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV
Sbjct: 605 GPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTV 664

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNNWLLLEG                                              HSIGI
Sbjct: 665 VNNWLLLEG----------------------------------------------HSIGI 678

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 679 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 738

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 739 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 798

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 799 FIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 858

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE K+RFDPSNER 
Sbjct: 859 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFERKFRFDPSNER- 917

Query: 491 TLRNVSSLRRVVN---SKPLLIGCWKLTSVEKE 520
                  LRR+ N   S+ L+     ++ +E+E
Sbjct: 918 ------YLRRIFNEDVSRQLMGSGEVISELERE 944



 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/498 (75%), Positives = 399/498 (80%), Gaps = 22/498 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D+LSKQANENATLLFQCLVRSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1012 VAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQAN 1071

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1072 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1131

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVIPEDQEFVN
Sbjct: 1132 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVN 1183

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1184 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1243

Query: 1180 LVLRIRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
            LVLRIRIMNSDD K  +  ++ VDKM+DDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQ
Sbjct: 1244 LVLRIRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQ 1303

Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
            TDSKKRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEA
Sbjct: 1304 TDSKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEA 1363

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
            VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE
Sbjct: 1364 VRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1423

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMM 1418
            ETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK GI IP   G  
Sbjct: 1424 ETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKMGIPIPQTNGGD 1483

Query: 1419 GGPAGMFFGSAATPSSIP 1436
               +GMFFG+ ATPS  P
Sbjct: 1484 IMSSGMFFGAVATPSMSP 1501



 Score =  282 bits (721), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 145/195 (74%), Positives = 155/195 (79%), Gaps = 12/195 (6%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1352 ICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1411

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK
Sbjct: 1412 QDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1471

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSP--QMTPWAQSTPAY--NALMSP----GAA 941
             GI IP   G     +GMFFG+ ATP SMSP   MTPW Q    +   +  SP    G+ 
Sbjct: 1472 MGIPIPQTNGGDIMSSGMFFGAVATP-SMSPTGAMTPWNQGATPFVGGSAWSPPNMLGSG 1530

Query: 942  MTPGGPGFSPSVAGE 956
            MTPGGP FSPS A +
Sbjct: 1531 MTPGGPAFSPSAASD 1545



 Score =  203 bits (517), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 112/153 (73%), Positives = 117/153 (76%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1155 LRKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1214

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1215 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1246

Query: 1649 RIRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD K  +  ++ VDKM+DDMFLRCIE
Sbjct: 1247 RIRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIE 1279



 Score =  200 bits (509), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 106/170 (62%), Positives = 120/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 847 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFE 906

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDPSNER LRRIFNEDV R+LMGSG+VISELE+E      W+QL++          
Sbjct: 907 RKFRFDPSNERYLRRIFNEDVSRQLMGSGEVISELERE------WEQLQK---------- 950

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 951 -------------------DREALRQIFPSGESKVVLPCNLQRMIWNVQK 981



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 771  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 830

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 831  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 872



 Score =  160 bits (404), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1367 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1426

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1427 DVLMDAASHAEVDPMRG 1443



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/43 (83%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VEN+H+TPRQIITPQ N+PVMGIVQDTLTA+RKMTKRDVF++K
Sbjct: 504  VENLHITPRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFINK 546



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARPDWM+VTVLPVPPL VRPAVVM+GSA+NQ+ + + L
Sbjct: 220 EECFILGMDPKFARPDWMIVTVLPVPPLPVRPAVVMYGSAKNQDDLTHKL 269


>gi|194245532|gb|ACF35375.1| RNA polymerase II large subunit [Chauliognathus opacus]
          Length = 629

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/453 (77%), Positives = 374/453 (82%), Gaps = 56/453 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++EQMMN+LMFLPIWDGKMP+P ILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED 
Sbjct: 85  DKEQMMNLLMFLPIWDGKMPRPAILKPKPLWTGKQLFSLIIPGNVNMIRTHSTHPDEEDD 144

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV
Sbjct: 145 GPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTV 204

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           +NNWLLLEG                                              HSIGI
Sbjct: 205 INNWLLLEG----------------------------------------------HSIGI 218

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 219 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 278

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 279 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 338

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 339 FIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 398

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE K+RFDPSNER 
Sbjct: 399 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFERKFRFDPSNER- 457

Query: 491 TLRNVSSLRRVVN---SKPLLIGCWKLTSVEKE 520
                  LRR+ N   S+ L+     ++ +E+E
Sbjct: 458 ------YLRRIFNEDVSRQLMGSGEVISELERE 484



 Score =  199 bits (507), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 106/170 (62%), Positives = 120/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 387 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFE 446

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDPSNER LRRIFNEDV R+LMGSG+VISELE+E      W+QL++          
Sbjct: 447 RKFRFDPSNERYLRRIFNEDVSRQLMGSGEVISELERE------WEQLQK---------- 490

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 491 -------------------DREALRQIFPSGESKVVLPCNLQRMIWNVQK 521



 Score =  170 bits (431), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 311  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 370

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 371  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 412



 Score =  107 bits (267), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 49/59 (83%), Positives = 55/59 (93%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            VAG+D+LSKQANENATLLFQCLVRSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ 
Sbjct: 552  VAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQA 610



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VEN+H+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+DK
Sbjct: 44   VENLHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIDK 86


>gi|194245551|gb|ACF35385.1| RNA polymerase II large subunit [Bembidion transversale]
 gi|194245553|gb|ACF35386.1| RNA polymerase II large subunit [Bembidion plagiatum]
          Length = 562

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/433 (79%), Positives = 364/433 (84%), Gaps = 53/433 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           N+EQMMN+LMFLPIWDGKMP+P ILKP PLWTGKQVFSLIIPGNVNM RTHSTHPD+ED 
Sbjct: 18  NKEQMMNLLMFLPIWDGKMPRPAILKPCPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDD 77

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEVCGRFYGNIQTV
Sbjct: 78  GPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGRFYGNIQTV 137

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           +NNWLLLEG                                              HSIGI
Sbjct: 138 INNWLLLEG----------------------------------------------HSIGI 151

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADPQTY+EIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 152 GDTIADPQTYVEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 211

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 212 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 271

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 272 FIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 331

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE K+RFDPSNER 
Sbjct: 332 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFEKKFRFDPSNER- 390

Query: 491 TLRNVSSLRRVVN 503
                  LRR+ N
Sbjct: 391 ------YLRRIFN 397



 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/170 (62%), Positives = 120/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 320 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFE 379

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDPSNER LRRIFNED++++LMGSGDVISELE+E      W+QL R          
Sbjct: 380 KKFRFDPSNERYLRRIFNEDIIKQLMGSGDVISELERE------WEQLSR---------- 423

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 424 -------------------DREALRQIFPSGESKVVLPCNLQRMIWNVQK 454



 Score =  170 bits (430), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 244  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 303

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 304  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 345



 Score =  107 bits (268), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 49/58 (84%), Positives = 55/58 (94%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ 1010
            VAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ
Sbjct: 485  VAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQ 542


>gi|194245564|gb|ACF35392.1| RNA polymerase II large subunit [Bembidion inaequale]
          Length = 553

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/433 (79%), Positives = 364/433 (84%), Gaps = 53/433 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           N+EQMMN+LMFLPIWDGKMP+P ILKP PLWTGKQVFSLIIPGNVNM RTHSTHPD+ED 
Sbjct: 9   NKEQMMNLLMFLPIWDGKMPRPAILKPCPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDD 68

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEVCGRFYGNIQTV
Sbjct: 69  GPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGRFYGNIQTV 128

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           +NNWLLLEG                                              HSIGI
Sbjct: 129 INNWLLLEG----------------------------------------------HSIGI 142

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADPQTY+EIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 143 GDTIADPQTYVEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 202

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 203 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 262

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 263 FIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 322

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE K+RFDPSNER 
Sbjct: 323 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFEKKFRFDPSNER- 381

Query: 491 TLRNVSSLRRVVN 503
                  LRR+ N
Sbjct: 382 ------YLRRIFN 388



 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/170 (62%), Positives = 120/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 311 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFE 370

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDPSNER LRRIFNED++++LMGSGDVISELE+E      W+QL R          
Sbjct: 371 KKFRFDPSNERYLRRIFNEDIIKQLMGSGDVISELERE------WEQLSR---------- 414

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 415 -------------------DREALRQIFPSGESKVVLPCNLQRMIWNVQK 445



 Score =  170 bits (430), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 235  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 294

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 295  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 336



 Score =  107 bits (268), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/58 (84%), Positives = 55/58 (94%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ 1010
            VAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ
Sbjct: 476  VAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQ 533


>gi|299152252|gb|ADJ18208.1| RNA polymerase II large subunit [Hydroscapha natans]
          Length = 446

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/423 (81%), Positives = 362/423 (85%), Gaps = 46/423 (10%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++EQMMN+LMFLPIW+GKMPQP ILKPK LWTGKQ+FSLIIPGNVNM RTHSTHPDDEDS
Sbjct: 17  DKEQMMNLLMFLPIWNGKMPQPAILKPKALWTGKQLFSLIIPGNVNMIRTHSTHPDDEDS 76

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEVCG+FYGNIQTV
Sbjct: 77  GPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHEVCGQFYGNIQTV 136

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNNWLLLEG                                              HSIGI
Sbjct: 137 VNNWLLLEG----------------------------------------------HSIGI 150

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 151 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 210

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 211 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 270

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 271 FIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 330

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K+FE K+RFDP+NER 
Sbjct: 331 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQNLPTVKLSNKEFERKFRFDPTNERH 390

Query: 491 TLR 493
             R
Sbjct: 391 LRR 393



 Score =  194 bits (492), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 102/161 (63%), Positives = 113/161 (70%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K+FE
Sbjct: 319 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQNLPTVKLSNKEFE 378

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDP+NER LRRIF EDV+R+LMGSG+VISELE+E      W+QL R          
Sbjct: 379 RKFRFDPTNERHLRRIFTEDVIRQLMGSGEVISELERE------WEQLTR---------- 422

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                              DRE LR+IF SGES VVLPCNL
Sbjct: 423 -------------------DREVLRQIFPSGESKVVLPCNL 444



 Score =  170 bits (430), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 302

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 303  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 344


>gi|194245555|gb|ACF35387.1| RNA polymerase II large subunit [Bembidion umbratum]
 gi|194245559|gb|ACF35389.1| RNA polymerase II large subunit [Bembidion rapidum]
          Length = 562

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/433 (79%), Positives = 364/433 (84%), Gaps = 53/433 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           N+EQMMN+LMFLPIWDGKMP+P ILKP PLWTGKQVFSLIIPGNVNM RTHSTHPD+ED 
Sbjct: 18  NKEQMMNLLMFLPIWDGKMPRPAILKPCPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDD 77

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY++ISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEVCGRFYGNIQTV
Sbjct: 78  GPYKYISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGRFYGNIQTV 137

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           +NNWLLLEG                                              HSIGI
Sbjct: 138 INNWLLLEG----------------------------------------------HSIGI 151

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADPQTY+EIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 152 GDTIADPQTYVEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 211

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 212 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 271

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 272 FIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 331

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE KYRFDPSNER 
Sbjct: 332 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFEKKYRFDPSNER- 390

Query: 491 TLRNVSSLRRVVN 503
                  LRR+ N
Sbjct: 391 ------YLRRIFN 397



 Score =  201 bits (510), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 106/170 (62%), Positives = 119/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 320 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFE 379

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KYRFDPSNER LRRIFNED++++LMGS DVISELE+E      W+QL R          
Sbjct: 380 KKYRFDPSNERYLRRIFNEDIIKQLMGSSDVISELERE------WEQLSR---------- 423

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 424 -------------------DREALRQIFPSGESKVVLPCNLQRMIWNVQK 454



 Score =  170 bits (431), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 244  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 303

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 304  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 345



 Score =  107 bits (268), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/58 (84%), Positives = 55/58 (94%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ 1010
            VAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ
Sbjct: 485  VAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQ 542


>gi|324120522|dbj|BAJ78652.1| RNA polymerase II largest subunit [Mnais pruinosa pruinosa]
          Length = 1557

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/442 (79%), Positives = 366/442 (82%), Gaps = 50/442 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILM LPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVNM RTHSTHPDDED G
Sbjct: 553 KEQMMNILMHLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDDEDDG 612

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTVV
Sbjct: 613 PYCWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVV 672

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 673 NNWLLLEG----------------------------------------------HSIGIG 686

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 687 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 746

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 747 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 806

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 807 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 866

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDP+NER  
Sbjct: 867 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFERKFKFDPTNER-N 925

Query: 492 LRNVSS---LRRVVNSKPLLIG 510
           LR V +   LR V      +IG
Sbjct: 926 LRRVFTEDVLREVSGGSSDIIG 947



 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/508 (73%), Positives = 401/508 (78%), Gaps = 27/508 (5%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED LSKQAN+NATLLFQCLVRSTLCTK V+E++RLSSEAFEWL+GEIE RFQQAQ  
Sbjct: 1020 VAGEDALSKQANQNATLLFQCLVRSTLCTKCVSEDFRLSSEAFEWLIGEIETRFQQAQCQ 1079

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1080 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1139

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1140 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIGEDQEFVN 1191

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFGDDLNCIFNDDNAE+
Sbjct: 1192 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINTGFGDDLNCIFNDDNAER 1251

Query: 1180 LVLRIRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMH 1235
            LVLRIRIMNSD++K          +VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMH
Sbjct: 1252 LVLRIRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMH 1311

Query: 1236 LPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1295
            LPQTDSKKRI++TESGEFKAIA+WLLETDGTSLM+VLSERDVDPVRTFSNDICEIF VLG
Sbjct: 1312 LPQTDSKKRIVVTESGEFKAIAEWLLETDGTSLMRVLSERDVDPVRTFSNDICEIFSVLG 1371

Query: 1296 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1355
            IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC
Sbjct: 1372 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1431

Query: 1356 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--L 1413
            SFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLD++KC+ GIEIP  L
Sbjct: 1432 SFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDSDKCRGGIEIPVML 1491

Query: 1414 ATGMMGGPAGMFFGSAATPSSIPGPPAW 1441
              GMM G  GM F +AATP+S P    W
Sbjct: 1492 GAGMMLGTGGMMFANAATPTSSPYRTPW 1519



 Score =  248 bits (634), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 135/174 (77%), Positives = 146/174 (83%), Gaps = 8/174 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1363 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1422

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLD++KC+
Sbjct: 1423 QDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDSDKCR 1482

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPW-AQSTPAY-NALMSPG 939
             GIEIP  L  GMM G  GM F +AATP+S SP  TPW   S+P Y N   SPG
Sbjct: 1483 GGIEIPVMLGAGMMLGTGGMMFANAATPTS-SPYRTPWLISSSPEYRNMPWSPG 1535



 Score =  211 bits (536), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 113/156 (72%), Positives = 118/156 (75%), Gaps = 32/156 (20%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1163 LRKVTANTAIYYDPDPQNTVIGEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1222

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GFG                            DDLNCIFNDDNAE+LVL
Sbjct: 1223 LTMEQIAEKINTGFG----------------------------DDLNCIFNDDNAERLVL 1254

Query: 1649 RIRIMNSDDSKM----QDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++K      DEED+VDKMEDDMFLRCIE
Sbjct: 1255 RIRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIE 1290



 Score =  183 bits (464), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/171 (57%), Positives = 114/171 (66%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 854 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFE 913

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELM-GSGDVISELEKEMVDHFSWKQLRRIFNEDVLRE 710
            K++FDP+NER LRR+F EDVLRE+  GS D+I  LE+E      W QL R         
Sbjct: 914 RKFKFDPTNERNLRRVFTEDVLREVSGGSSDIIGALERE------WDQLVR--------- 958

Query: 711 LMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                               DREALR+IF SG+S VVLPCNL  +I+ +Q+
Sbjct: 959 --------------------DREALRQIFPSGDSKVVLPCNLQRMIWNVQK 989



 Score =  171 bits (433), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 778  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 837

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 838  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 879



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1378 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1437

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1438 DVLMDAASHAEVDPMRG 1454



 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 45/50 (90%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  I+GMDPK+ARPDWM+VTVLPVPPLSVRPAVVM+GSARNQ+ + + L
Sbjct: 227 EECFIMGMDPKYARPDWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKL 276



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/43 (93%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 511  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 553


>gi|357628227|gb|EHJ77617.1| largest subunit of the RNA polymerase II complex [Danaus plexippus]
          Length = 1895

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/503 (74%), Positives = 401/503 (79%), Gaps = 23/503 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED+LSKQANENATLLFQCLVRST CTK V+E+YRLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 1013 VAGEDRLSKQANENATLLFQCLVRSTFCTKYVSEDYRLSSEAFEWLIGEIETRFQQAQVN 1072

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1073 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1132

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1133 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVN 1184

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPT+ISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1185 VYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1244

Query: 1180 LVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
            LVLRIRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQ
Sbjct: 1245 LVLRIRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQ 1304

Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
            T++KKRIIIT+ GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA
Sbjct: 1305 TEAKKRIIITDQGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1364

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
            VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE
Sbjct: 1365 VRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1424

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMM 1418
            ETVDVL+DAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK G+E+      M
Sbjct: 1425 ETVDVLLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKHGMEMGGLGVGM 1484

Query: 1419 GGPAGMFFGSAATPSSIPGPPAW 1441
            G   GM+FG   TPS  P    W
Sbjct: 1485 GVAGGMYFG-VGTPSMTPLMTPW 1506



 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/418 (79%), Positives = 351/418 (83%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGK+PQPCILKP+PLWTGKQ+F+LIIPGNVNM RTHSTHPDDED G
Sbjct: 547 KEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGNVNMVRTHSTHPDDEDDG 606

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
             +WISPGDTKV+VEHG LLMGILCKKSLG S+GSLLHIC LELGHE+ GRFYGNIQTV+
Sbjct: 607 VNRWISPGDTKVIVEHGELLMGILCKKSLGASAGSLLHICMLELGHEIAGRFYGNIQTVI 666

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 667 NNWLLLEG----------------------------------------------HSIGIG 680

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AI KAK+DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 681 DTIADPQTYQEIQRAIVKAKDDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 740

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 741 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 800

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 801 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 860

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMVHYD TVRNSVGQLIQLRYGEDGL GE VE Q + TV LS+K FE K++FDP+NER
Sbjct: 861 VMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNMPTVKLSNKAFEKKFKFDPTNER 918



 Score =  266 bits (681), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 143/192 (74%), Positives = 160/192 (83%), Gaps = 10/192 (5%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1353 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1412

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVL+DAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK
Sbjct: 1413 QDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1472

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWA-QSTPAY-NALMSP---GAAMTP 944
             G+E+      MG   GM+FG   TP SM+P MTPW+ Q+TP Y +++ SP   G++MTP
Sbjct: 1473 HGMEMGGLGVGMGVAGGMYFG-VGTP-SMTPLMTPWSNQNTPGYGSSVWSPGQVGSSMTP 1530

Query: 945  GGPGFSPSVAGE 956
            GGP FSPS A +
Sbjct: 1531 GGPSFSPSGASD 1542



 Score =  222 bits (566), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 112/153 (73%), Positives = 119/153 (77%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPT+ISPWLLRIELDRKRMTDKK
Sbjct: 1156 LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPWLLRIELDRKRMTDKK 1215

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1216 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1247

Query: 1649 RIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIE 1680
            RIRIMN+++SK QD +E+ VDKMEDDMFLRCIE
Sbjct: 1248 RIRIMNNEESKFQDNDEETVDKMEDDMFLRCIE 1280



 Score =  183 bits (464), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 114/170 (67%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGL GE VE Q + TV LS+K FE
Sbjct: 848 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNMPTVKLSNKAFE 907

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER L+RIF+ED+++EL  SG VI++LE E      W               
Sbjct: 908 KKFKFDPTNERYLKRIFHEDIIKELTESGYVIADLESE------W--------------- 946

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                         E+LC+DRE LR+IF SGES VVLPCN   +I+ +Q+
Sbjct: 947 --------------EQLCKDREILRQIFPSGESKVVLPCNFRRMIWNVQK 982



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/113 (70%), Positives = 91/113 (80%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   +    +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 761  VAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 820

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            LTPSEF+FHAMGGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 821  LTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 873



 Score =  160 bits (404), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1368 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1427

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL+DAA+HAE DPMRG
Sbjct: 1428 DVLLDAASHAEVDPMRG 1444



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 45/50 (90%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           E+S ILGMDPKFARPDWM+VTVLPVPPL+VRPAVVM GSA+NQ+ + + L
Sbjct: 221 EDSFILGMDPKFARPDWMIVTVLPVPPLAVRPAVVMFGSAKNQDDLTHKL 270



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL K
Sbjct: 505  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLTK 547


>gi|194245557|gb|ACF35388.1| RNA polymerase II large subunit [Bembidion mandibulare]
          Length = 562

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/433 (79%), Positives = 363/433 (83%), Gaps = 53/433 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           N EQMMN+LMFLPIWDGKMP+P ILKP PLWTGKQVFSLIIPGNVNM RTHSTHPD+ED 
Sbjct: 18  NIEQMMNLLMFLPIWDGKMPRPAILKPCPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDD 77

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEVCGRFYGNIQTV
Sbjct: 78  GPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGRFYGNIQTV 137

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           +NNWLLLEG                                              HSIGI
Sbjct: 138 INNWLLLEG----------------------------------------------HSIGI 151

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADPQTY+EIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 152 GDTIADPQTYVEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 211

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAKKSLTEYNNLKAMVV+G+KGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 212 DKTGGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 271

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 272 FIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 331

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE K+RFDPSNER 
Sbjct: 332 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFEKKFRFDPSNER- 390

Query: 491 TLRNVSSLRRVVN 503
                  LRR+ N
Sbjct: 391 ------YLRRIFN 397



 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/170 (62%), Positives = 120/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 320 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFE 379

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDPSNER LRRIFNED++++LMGSGDVISELE+E      W+QL R          
Sbjct: 380 KKFRFDPSNERYLRRIFNEDIIKQLMGSGDVISELERE------WEQLSR---------- 423

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 424 -------------------DREALRQIFPSGESKVVLPCNLQRMIWNVQK 454



 Score =  170 bits (430), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 244  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 303

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 304  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 345



 Score =  107 bits (268), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 49/58 (84%), Positives = 55/58 (94%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ 1010
            VAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ
Sbjct: 485  VAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQ 542


>gi|324120576|dbj|BAJ78679.1| RNA polymerase II largest subunit [Inocellia japonica]
          Length = 1913

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/418 (81%), Positives = 359/418 (85%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVN+ RTHSTHPDDED G
Sbjct: 550 KEQMMNLLMFLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNLIRTHSTHPDDEDDG 609

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCK++LG S+GSLLHICFLELGHEVCGRFYGNIQTV+
Sbjct: 610 PYKWISPGDTKVMVEHGELIMGILCKRTLGASAGSLLHICFLELGHEVCGRFYGNIQTVI 669

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 670 NNWLLLEG----------------------------------------------HSIGIG 683

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 684 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 743

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 744 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 803

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 804 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 863

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS++ FE+K++FDPSNER
Sbjct: 864 VMVNYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQSLPTVKLSNRAFENKFKFDPSNER 921



 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/476 (76%), Positives = 384/476 (80%), Gaps = 24/476 (5%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED LSKQANENATLLFQCLVRS LCTK VAE +RLSSEAFEWL+GEIE RFQQAQ  
Sbjct: 1017 VAGEDHLSKQANENATLLFQCLVRSXLCTKCVAEEFRLSSEAFEWLIGEIETRFQQAQCA 1076

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1136

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1137 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVN 1188

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1189 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1248

Query: 1180 LVLRIRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHL 1236
            LVLRIRIMNS+D+K    E+    VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHL
Sbjct: 1249 LVLRIRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHL 1308

Query: 1237 PQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGI 1296
            PQTDSKKRI++TE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGI
Sbjct: 1309 PQTDSKKRIVVTETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGI 1368

Query: 1297 EAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1356
            EAVRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS
Sbjct: 1369 EAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1428

Query: 1357 FEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 1412
            FEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDA+KCK GIE+P
Sbjct: 1429 FEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDADKCKAGIELP 1484



 Score =  270 bits (689), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 152/201 (75%), Positives = 163/201 (81%), Gaps = 18/201 (8%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1359 ICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1418

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDA+KCK
Sbjct: 1419 QDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDADKCK 1478

Query: 890  DGIEIP-------LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAY--NALMSP- 938
             GIE+P            +GG AGMFFG+AATP SMSPQMTPW Q STP Y   +  SP 
Sbjct: 1479 AGIELPLGLGAGGGMGMGVGGGAGMFFGAAATP-SMSPQMTPWNQGSTPGYGPGSAWSPG 1537

Query: 939  ---GAAMTPGGPGFSPSVAGE 956
               G+ MTPGGP FSPS A +
Sbjct: 1538 QMLGSGMTPGGPSFSPSAASD 1558



 Score =  218 bits (554), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 112/155 (72%), Positives = 116/155 (74%), Gaps = 31/155 (20%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1160 LRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1219

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1220 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1251

Query: 1649 RIRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIE 1680
            RIRIMNS+D+K    E+    VDKMEDDMFLRCIE
Sbjct: 1252 RIRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIE 1286



 Score =  183 bits (465), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 98/171 (57%), Positives = 118/171 (69%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS++ FE
Sbjct: 851 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQSLPTVKLSNRAFE 910

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGS-GDVISELEKEMVDHFSWKQLRRIFNEDVLRE 710
           +K++FDPSNER LRRIF EDV+++LM S GDVI ELE+E      W+Q            
Sbjct: 911 NKFKFDPSNERYLRRIFAEDVVKQLMSSGGDVIQELERE------WEQ------------ 952

Query: 711 LMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                            L +DREALR+IF SG++ VVLPCNL  +I+ +Q+
Sbjct: 953 -----------------LVKDREALRQIFPSGDNKVVLPCNLQRMIWNVQK 986



 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 775  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 834

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 835  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 876



 Score =  160 bits (405), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1374 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1433

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1434 DVLMDAASHAEVDPMRG 1450



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/50 (80%), Positives = 45/50 (90%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARPDWM+VTVLPVPPLSVRPAVVM+GSARNQ+ + + L
Sbjct: 224 EECFILGMDPKFARPDWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKL 273



 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 508  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 550


>gi|324120512|dbj|BAJ78647.1| RNA polymerase II largest subunit [Petrobiellus takunagae]
          Length = 1882

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/497 (75%), Positives = 405/497 (81%), Gaps = 22/497 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D LS+ AN NATLLFQCLVR+TLCT+ VAE +RLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 997  VAGDDHLSRMANANATLLFQCLVRATLCTRRVAEEFRLSSEAFEWLIGEIETRFQQAQVQ 1056

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1057 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1116

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1117 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVITEDQEFVN 1168

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPT+ISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1169 VYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1228

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1229 LVLRIRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1288

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+IT++GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1289 DSKKRIVITDTGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFAVLGIEAV 1348

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1349 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1408

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL-ATGMM 1418
            TVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLD+EKCK GIEIP+     M
Sbjct: 1409 TVDVLMDAASHAEQDPMRGVSENIIMGQLPRMGTGCFDLLLDSEKCKQGIEIPMNIGAGM 1468

Query: 1419 GGPAGMFFGSAATPSSI 1435
             G AGMF+GSAATPS +
Sbjct: 1469 MGGAGMFYGSAATPSGM 1485



 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/432 (78%), Positives = 355/432 (82%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LM LPIWDGKMPQP ILKPK +WTGKQVFSLIIPGNVNM RTHSTHPDDED G
Sbjct: 531 KEQMMNLLMHLPIWDGKMPQPAILKPKLMWTGKQVFSLIIPGNVNMIRTHSTHPDDEDDG 590

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
            Y+WISPGDTKV+VEHG L+MGILCKK+LG S+GSLLHIC LELGHEV GRFYGNIQTV+
Sbjct: 591 AYKWISPGDTKVMVEHGELVMGILCKKTLGASAGSLLHICMLELGHEVAGRFYGNIQTVI 650

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 651 NNWLLLEG----------------------------------------------HSIGIG 664

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 665 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 724

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 725 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 784

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 785 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 844

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD T+RNSVGQLIQLRYGEDGL GE VE Q   T+ LS+K FE +++FDP NER  
Sbjct: 845 VMVHYDGTIRNSVGQLIQLRYGEDGLAGETVEFQTQPTIKLSNKAFEKRFKFDPQNER-- 902

Query: 492 LRNVSSLRRVVN 503
                 LRR+ N
Sbjct: 903 -----YLRRIFN 909



 Score =  275 bits (704), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/170 (82%), Positives = 150/170 (88%), Gaps = 5/170 (2%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1336 ICEIFAVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1395

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLD+EKCK
Sbjct: 1396 QDTGALMRCSFEETVDVLMDAASHAEQDPMRGVSENIIMGQLPRMGTGCFDLLLDSEKCK 1455

Query: 890  DGIEIPL-ATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMS 937
             GIEIP+     M G AGMF+GSAATPS MSPQMTPW Q  TPAY ++ S
Sbjct: 1456 QGIEIPMNIGAGMMGGAGMFYGSAATPSGMSPQMTPWNQGGTPAYASVWS 1505



 Score =  210 bits (534), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 113/152 (74%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPT+ISPWLLRIELDRKRMTDKK
Sbjct: 1140 LRKVTANTAIYYDPDPQNTVITEDQEFVNVYYEMPDFDPTKISPWLLRIELDRKRMTDKK 1199

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1200 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1231

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNS++SK Q+EE+ VDKMEDDMFLRCIE
Sbjct: 1232 RIRIMNSEESKFQEEEEQVDKMEDDMFLRCIE 1263



 Score =  187 bits (474), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 93/170 (54%), Positives = 116/170 (68%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD T+RNSVGQLIQLRYGEDGL GE VE Q   T+ LS+K FE
Sbjct: 832 GYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAGETVEFQTQPTIKLSNKAFE 891

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FDP NER LRRIFNED+++ELMGSG+VISELE+E                      
Sbjct: 892 KRFKFDPQNERYLRRIFNEDIMKELMGSGEVISELERE---------------------- 929

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        W++L +DRE+LR+IF +G++  VLPCNL  +I+ +Q+
Sbjct: 930 -------------WDQLQKDRESLRQIFPNGDNKAVLPCNLQRMIWNVQK 966



 Score =  171 bits (432), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 756  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 815

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 816  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSV 857



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1351 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1410

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1411 DVLMDAASHAEQDPMRG 1427



 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 45/50 (90%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM+GSARNQ+ + + L
Sbjct: 205 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMYGSARNQDDLTHKL 254



 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+T RQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 489  VENIHITARQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 531


>gi|324120586|dbj|BAJ78684.1| RNA polymerase II largest subunit [Papilio polytes]
          Length = 1518

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/503 (74%), Positives = 402/503 (79%), Gaps = 23/503 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED+LSKQANENATLLFQCLVRSTLCTK V+E YRLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 1008 VAGEDRLSKQANENATLLFQCLVRSTLCTKFVSEEYRLSSEAFEWLIGEIETRFQQAQVN 1067

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1068 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1127

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1128 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVN 1179

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPT+ISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1180 VYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1239

Query: 1180 LVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
            LVLRIRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQ
Sbjct: 1240 LVLRIRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQ 1299

Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
            T++KKRIIITE GEFKAIA+WLLETDGTSLMKVLSERDVDP+RTFSNDICEIFQVLGIEA
Sbjct: 1300 TEAKKRIIITEQGEFKAIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEA 1359

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
            VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE
Sbjct: 1360 VRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1419

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMM 1418
            ETVDVL+DAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK G+E+      M
Sbjct: 1420 ETVDVLLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKHGMEMGGLGVGM 1479

Query: 1419 GGPAGMFFGSAATPSSIPGPPAW 1441
            G  AGM+FG   TPS  P    W
Sbjct: 1480 GVGAGMYFG-VGTPSMTPLMTPW 1501



 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/432 (78%), Positives = 357/432 (82%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGK+PQPCILKP+PLWTGKQ+F+LIIPGNVNM RTHSTHPD+ED G
Sbjct: 542 KEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGNVNMIRTHSTHPDEEDDG 601

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKVVVEHG LLMGILCKKSLG S+GSLLHIC LELGHE  GRFYGNIQTV+
Sbjct: 602 PYKWISPGDTKVVVEHGELLMGILCKKSLGASAGSLLHICMLELGHETAGRFYGNIQTVI 661

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 662 NNWLLLEG----------------------------------------------HSIGIG 675

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AI KAK+DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 676 DTIADPQTYQEIQRAIVKAKDDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 735

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 736 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 795

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 796 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 855

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGL GE VE Q + TV LS+K FE K++FDPSNER  
Sbjct: 856 VMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTVKLSNKAFEKKFKFDPSNER-- 913

Query: 492 LRNVSSLRRVVN 503
                 L+R+ N
Sbjct: 914 -----YLKRIFN 920



 Score =  247 bits (630), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 133/172 (77%), Positives = 147/172 (85%), Gaps = 7/172 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1348 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1407

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVL+DAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK
Sbjct: 1408 QDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1467

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWA-QSTPAY-NALMSPG 939
             G+E+      MG  AGM+FG   TP SM+P MTPW+ Q+TP Y +++ SPG
Sbjct: 1468 HGMEMGGLGVGMGVGAGMYFG-VGTP-SMTPLMTPWSTQNTPGYGSSVWSPG 1517



 Score =  221 bits (563), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 112/153 (73%), Positives = 119/153 (77%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPT+ISPWLLRIELDRKRMTDKK
Sbjct: 1151 LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPWLLRIELDRKRMTDKK 1210

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1211 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1242

Query: 1649 RIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIE 1680
            RIRIMN+++SK QD +E+ VDKMEDDMFLRCIE
Sbjct: 1243 RIRIMNNEESKFQDNDEETVDKMEDDMFLRCIE 1275



 Score =  181 bits (459), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 97/170 (57%), Positives = 113/170 (66%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGL GE VE Q + TV LS+K FE
Sbjct: 843 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTVKLSNKAFE 902

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDPSNER L+RIFNED+++EL  SG VIS+LE E      W+QL +          
Sbjct: 903 KKFKFDPSNERYLKRIFNEDIIKELTESGYVISDLESE------WEQLSK---------- 946

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DRE LR+IF SGES VVLPCN   +I+ +Q+
Sbjct: 947 -------------------DREILRQIFPSGESKVVLPCNFKRMIWNVQK 977



 Score =  170 bits (430), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 767  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 826

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 827  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 868



 Score =  159 bits (401), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1363 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1422

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL+DAA+HAE DPMRG
Sbjct: 1423 DVLLDAASHAEVDPMRG 1439



 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 51/64 (79%), Gaps = 1/64 (1%)

Query: 17  TSVYAWYVVPY-PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
           T+   W ++ +   EES ILGMDPKFARPDWM+VTVLPVPPLSVRPAVVM G+A+NQ+ +
Sbjct: 202 TAERVWEILKHITDEESFILGMDPKFARPDWMIVTVLPVPPLSVRPAVVMFGAAKNQDDL 261

Query: 76  MNIL 79
            + L
Sbjct: 262 THKL 265



 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/54 (74%), Positives = 44/54 (81%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL K      + + P
Sbjct: 500  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLTKEQVMNLLMFLP 553


>gi|38232333|gb|AAR15002.1| RNA polymerase II largest subunit [Nicoletia meinerti]
          Length = 445

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/458 (76%), Positives = 374/458 (81%), Gaps = 56/458 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LM LPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVNM RTHSTHPDDED G
Sbjct: 17  KEQMMNLLMHLPIWDGKMPQPSILKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDDEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTVV
Sbjct: 77  PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 137 NNWLLLEG----------------------------------------------HSIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAKEDVIEVI KAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 151 DTIADPQTYQEIQKAIKKAKEDVIEVIHKAHNMELEPTPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDP+NER  
Sbjct: 331 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKFDPTNER-- 388

Query: 492 LRNVSSLRRVVNSKPL--LIGCWKLTS-VEKEMNTVLQ 526
                 LRR+ N   L  L+G  ++ S +EKE   +++
Sbjct: 389 -----YLRRIFNEDVLKELMGSGEVISELEKEWEQLVK 421



 Score =  191 bits (484), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 100/161 (62%), Positives = 113/161 (70%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 318 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIFNEDVL+ELMGSG+VISELEKE      W+Q             
Sbjct: 378 KKFKFDPTNERYLRRIFNEDVLKELMGSGEVISELEKE------WEQ------------- 418

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                           L +DREALR+IF SG++ VV PCNL
Sbjct: 419 ----------------LVKDREALRQIFPSGDNKVVQPCNL 443



 Score =  171 bits (433), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 343


>gi|324120528|dbj|BAJ78655.1| RNA polymerase II largest subunit [Phraortes illepidus]
          Length = 1563

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/455 (76%), Positives = 372/455 (81%), Gaps = 51/455 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 529 KEQMMNLLMFLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDDG 588

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LG S+GSLLHICFLELGHEVCG FYGNIQTV+
Sbjct: 589 PYRWISPGDTKVMVEHGELVMGILCKKTLGASAGSLLHICFLELGHEVCGLFYGNIQTVI 648

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 649 NNWLLLEG----------------------------------------------HSIGIG 662

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY+EIQ AIKKAKEDVIEVI KAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 663 DTIADPQTYMEIQRAIKKAKEDVIEVIHKAHNMELEPTPGNTLRQTFENQVNRILNDARD 722

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 723 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 782

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 783 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 842

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE+VE Q + TV LS++ FE K++FD +NER  
Sbjct: 843 VMVHYDGTVRNSVGQLIQLRYGEDGLCGESVEFQNLPTVKLSNRSFEKKFKFDSTNERHL 902

Query: 492 LR--NVSSLRRVVNSKPL---LIGCWKLTSVEKEM 521
            R  N   LR ++ S  +   L G W L   ++EM
Sbjct: 903 RRIFNEDVLRELLGSNDVISELDGEWDLLCKDREM 937



 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/504 (74%), Positives = 400/504 (79%), Gaps = 23/504 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GEIE RFQQAQ  
Sbjct: 995  VAGEDHLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQCA 1054

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1055 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1114

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1115 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVN 1166

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1167 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1226

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDM-FLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
            LVLRIRIMNSDD+K Q+EE+ +    +D  FLRCIEANMLSDMTLQGIEAI KVYMHLPQ
Sbjct: 1227 LVLRIRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQ 1286

Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
            TD+KKRI++T++GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEA
Sbjct: 1287 TDAKKRIVVTDTGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEA 1346

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
            VRKSVEKEMNTVL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE
Sbjct: 1347 VRKSVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1406

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT-GM 1417
            ETVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLDAEKCK GIEIP++    
Sbjct: 1407 ETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCKAGIEIPMSVGAG 1466

Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
            M G AGMFFGSAATPS  P    W
Sbjct: 1467 MMGGAGMFFGSAATPSMSPQLTPW 1490



 Score =  281 bits (720), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 142/192 (73%), Positives = 156/192 (81%), Gaps = 8/192 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMNTVL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1335 ICEIFSVLGIEAVRKSVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1394

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLDAEKCK
Sbjct: 1395 QDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCK 1454

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSP----GAAMTP 944
             GIEIP++ G         F  +A   SMSPQ+TPW Q +TPAY ++ SP    G+ MTP
Sbjct: 1455 AGIEIPMSVGAGMMGGAGMFFGSAATPSMSPQLTPWNQGATPAYGSIWSPGNVLGSGMTP 1514

Query: 945  GGPGFSPSVAGE 956
            GGP FSPS A +
Sbjct: 1515 GGPSFSPSGASD 1526



 Score =  199 bits (507), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 114/153 (74%), Positives = 119/153 (77%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1138 LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1197

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1198 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1229

Query: 1649 RIRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD+K Q +EE+ +DKMEDDMFLRCIE
Sbjct: 1230 RIRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIE 1262



 Score =  197 bits (500), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 101/170 (59%), Positives = 117/170 (68%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE+VE Q + TV LS++ FE
Sbjct: 830 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGESVEFQNLPTVKLSNRSFE 889

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD +NER LRRIFNEDVLREL+GS DVISE                          
Sbjct: 890 KKFKFDSTNERHLRRIFNEDVLRELLGSNDVISE-------------------------- 923

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                    L+ EW+ LC+DRE LR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 924 ---------LDGEWDLLCKDREMLRQIFPSGESKVVLPCNLQRMIWNVQK 964



 Score =  170 bits (430), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 754  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 813

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 814  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 855



 Score =  159 bits (403), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1350 SVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1409

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1410 DVLMDAASHAEVDPMRG 1426



 Score = 87.8 bits (216), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARPDWM+VTVLPVPPL VRPAVVM+GSARNQ+ + + L
Sbjct: 203 EECFILGMDPKFARPDWMIVTVLPVPPLCVRPAVVMYGSARNQDDLTHKL 252



 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/43 (93%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 487  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 529


>gi|324120510|dbj|BAJ78646.1| RNA polymerase II largest subunit [Pedetontus unimaculatus]
          Length = 1549

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/497 (76%), Positives = 405/497 (81%), Gaps = 22/497 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED LSK ANENATLLFQCLVR+TLCT+ VAE +RLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 997  VAGEDHLSKMANENATLLFQCLVRATLCTRRVAEEFRLSSEAFEWLIGEIETRFQQAQVQ 1056

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1057 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1116

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1117 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVITEDQEFVN 1168

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPT+ISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1169 VYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1228

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNS++SK Q+EE+  DKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1229 LVLRIRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1288

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            D+KKRI+IT++GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1289 DAKKRIMITDTGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAV 1348

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1349 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1408

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL-ATGMM 1418
            TVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLD+EKCK GIEIP+     M
Sbjct: 1409 TVDVLMDAASHAEQDPMRGVSENIIMGQLPRMGTGCFDLLLDSEKCKHGIEIPMNIGAGM 1468

Query: 1419 GGPAGMFFGSAATPSSI 1435
             G AGMF+GSAATPS +
Sbjct: 1469 MGGAGMFYGSAATPSGM 1485



 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/432 (78%), Positives = 358/432 (82%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LM LPIWDGKMPQP ILKPKP+WTGKQVFSLIIPGNVNM RTHSTHPDDED G
Sbjct: 531 KEQMMNLLMHLPIWDGKMPQPAILKPKPMWTGKQVFSLIIPGNVNMIRTHSTHPDDEDDG 590

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LG S+GSLLHIC LELGHEV GRFYGNIQTV+
Sbjct: 591 PYKWISPGDTKVMVEHGELVMGILCKKTLGASAGSLLHICMLELGHEVAGRFYGNIQTVI 650

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 651 NNWLLLEG----------------------------------------------HSIGIG 664

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 665 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 724

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 725 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 784

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 785 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 844

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD T+RNSVGQLIQLRYGEDGL GE VE Q   T+ LS+K FE K++FDP+NER  
Sbjct: 845 VMVHYDGTIRNSVGQLIQLRYGEDGLAGETVEFQTQPTIKLSNKAFEKKFKFDPTNER-- 902

Query: 492 LRNVSSLRRVVN 503
                 LRR+ N
Sbjct: 903 -----YLRRIFN 909



 Score =  275 bits (703), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/170 (82%), Positives = 150/170 (88%), Gaps = 5/170 (2%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1336 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1395

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLD+EKCK
Sbjct: 1396 QDTGALMRCSFEETVDVLMDAASHAEQDPMRGVSENIIMGQLPRMGTGCFDLLLDSEKCK 1455

Query: 890  DGIEIPL-ATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMS 937
             GIEIP+     M G AGMF+GSAATPS MSPQMTPW Q  TPAY ++ S
Sbjct: 1456 HGIEIPMNIGAGMMGGAGMFYGSAATPSGMSPQMTPWNQGGTPAYGSVWS 1505



 Score =  207 bits (528), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 112/152 (73%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPT+ISPWLLRIELDRKRMTDKK
Sbjct: 1140 LRKVTANTAIYYDPDPQNTVITEDQEFVNVYYEMPDFDPTKISPWLLRIELDRKRMTDKK 1199

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1200 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1231

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNS++SK Q+EE+  DKMEDDMFLRCIE
Sbjct: 1232 RIRIMNSEESKFQEEEEQADKMEDDMFLRCIE 1263



 Score =  187 bits (475), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 96/170 (56%), Positives = 118/170 (69%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD T+RNSVGQLIQLRYGEDGL GE VE Q   T+ LS+K FE
Sbjct: 832 GYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAGETVEFQTQPTIKLSNKAFE 891

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIFNED+++ELMGSG+VISELE+E      W+QL++          
Sbjct: 892 KKFKFDPTNERYLRRIFNEDIMKELMGSGEVISELERE------WEQLQK---------- 935

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR+IF +G++  VLPCNL  +I+ +Q+
Sbjct: 936 -------------------DREALRQIFPNGDNKAVLPCNLQRMIWNVQK 966



 Score =  171 bits (432), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 756  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 815

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 816  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSV 857



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 76/77 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1351 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1410

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1411 DVLMDAASHAEQDPMRG 1427



 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 45/50 (90%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM+GSARNQ+ + + L
Sbjct: 205 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMYGSARNQDDLTHKL 254



 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+T RQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 489  VENIHITARQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 531


>gi|324120580|dbj|BAJ78681.1| RNA polymerase II largest subunit [Stichotrema asahinai]
          Length = 1696

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/505 (72%), Positives = 396/505 (78%), Gaps = 26/505 (5%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG D+LSKQANENATLLFQCLVRSTLCTK V E+YRLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 1012 VAGNDRLSKQANENATLLFQCLVRSTLCTKSVTEDYRLSSEAFEWLIGEIETRFQQAQVS 1071

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1072 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVF 1131

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVIPEDQEFVN
Sbjct: 1132 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVN 1183

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            +YYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME ISEKI +GFGDDLN IFNDDNAEK
Sbjct: 1184 IYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQISEKITSGFGDDLNIIFNDDNAEK 1243

Query: 1180 LVLRIRIM-NSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
            LVLR+R+M NS D+K  +EED V++MEDDMFLRC+E N+LSDMTLQGIE+I KVYMHLPQ
Sbjct: 1244 LVLRVRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGIESISKVYMHLPQ 1302

Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
            +DSKKRIIITESGE+KAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEA
Sbjct: 1303 SDSKKRIIITESGEYKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEA 1362

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
            VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE
Sbjct: 1363 VRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1422

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMM 1418
            ETVD+LMDAAAHAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK G+ I + TG  
Sbjct: 1423 ETVDILMDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKSGMSI-MQTGSA 1481

Query: 1419 GG--PAGMFFGSAATPSSIPGPPAW 1441
                  GMF+ SA TP+       W
Sbjct: 1482 DNILSMGMFYSSAGTPAQAAANTPW 1506



 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/452 (75%), Positives = 368/452 (81%), Gaps = 56/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MNILMFLPIWDGKMP+P I+KPKP+WTGKQ+FSLIIPGNVN+ RTHSTHPD+ED G
Sbjct: 546 KEQVMNILMFLPIWDGKMPKPAIIKPKPMWTGKQIFSLIIPGNVNLIRTHSTHPDEEDEG 605

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC+LELGHEVCGRFYGNIQTVV
Sbjct: 606 PYRWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICYLELGHEVCGRFYGNIQTVV 665

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 666 NNWLLYEG----------------------------------------------HSIGIG 679

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY+EIQ AIKKAKEDV++VIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 680 DTIADPQTYVEIQKAIKKAKEDVMQVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 739

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTE+NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 740 KTGGSAKKSLTEHNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 799

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 800 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 859

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQ RYGEDGLCGE VE Q + T+ LS++ FE  +RFD SNER  
Sbjct: 860 VMVHYDGTVRNSVGQLIQFRYGEDGLCGEMVEFQNLPTLKLSNRSFERNFRFDASNER-- 917

Query: 492 LRNVSSLRRVVNS---KPLLIGCWKLTSVEKE 520
                 LRRV      K L+     ++ +EKE
Sbjct: 918 -----YLRRVFTEDVIKDLMGSADAISELEKE 944



 Score =  270 bits (689), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 138/193 (71%), Positives = 153/193 (79%), Gaps = 11/193 (5%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1351 ICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1410

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVD+LMDAAAHAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK
Sbjct: 1411 QDTGALMRCSFEETVDILMDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1470

Query: 890  DGIEIPLATGMMGG--PAGMFFGSAATPSSMSPQMTPWAQS-TPAYNA---LMSPGAAMT 943
             G+ I + TG        GMF+ SA TP+  +   TPW+ S TP  ++   + SP + MT
Sbjct: 1471 SGMSI-MQTGSADNILSMGMFYSSAGTPAQAAAN-TPWSYSNTPIGSSSAWMQSPASGMT 1528

Query: 944  PGGPGFSPSVAGE 956
            PGG  FSPS+  E
Sbjct: 1529 PGGAAFSPSMQSE 1541



 Score =  209 bits (533), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 107/153 (69%), Positives = 116/153 (75%), Gaps = 30/153 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVIPEDQEFVN+YYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1155 LRKVTANTAIYYDPDPQNTVIPEDQEFVNIYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1214

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME ISEKI +GFG                            DDLN IFNDDNAEKLVL
Sbjct: 1215 LTMEQISEKITSGFG----------------------------DDLNIIFNDDNAEKLVL 1246

Query: 1649 RIRIM-NSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+R+M NS D+K  +EED V++MEDDMFLRC+E
Sbjct: 1247 RVRLMNNSTDNKFAEEED-VERMEDDMFLRCLE 1278



 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 97/170 (57%), Positives = 111/170 (65%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQ RYGEDGLCGE VE Q + T+ LS++ FE
Sbjct: 847 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQFRYGEDGLCGEMVEFQNLPTLKLSNRSFE 906

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +RFD SNER LRR+F EDV+++LMGS D ISELEKE                      
Sbjct: 907 RNFRFDASNERYLRRVFTEDVIKDLMGSADAISELEKE---------------------- 944

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE L  DRE LR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 945 -------------WEMLVRDRETLRQIFPSGESKVVLPCNLQRMIWNVQK 981



 Score =  170 bits (430), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 771  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 830

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 831  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 872



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1366 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1425

Query: 576  DVLMDAAAHAEADPMRG 592
            D+LMDAAAHAE DPMRG
Sbjct: 1426 DILMDAAAHAEVDPMRG 1442



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 52/67 (77%), Gaps = 1/67 (1%)

Query: 14  VSNTSVYAWYVVPY-PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQ 72
           +S T+  AW ++ +   EE  I+GMDPKFARPDWM+V+ +PVPPLSVRPAVVM+GS RNQ
Sbjct: 203 ISLTAERAWEIMKHITDEECYIMGMDPKFARPDWMIVSAIPVPPLSVRPAVVMYGSTRNQ 262

Query: 73  EQMMNIL 79
           + + + L
Sbjct: 263 DDLTHKL 269



 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VE++H+TPRQIITPQ NRPVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 504  VEHLHITPRQIITPQANRPVMGIVQDTLTAVRKMTKRDVFLEK 546


>gi|194245545|gb|ACF35382.1| RNA polymerase II large subunit [Laccophilus pictus]
          Length = 562

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/432 (79%), Positives = 360/432 (83%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLPIWDGKMP+P ILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 19  KEQMMNILMFLPIWDGKMPRPAILKPKPLWTGKQIFSLIIPGNVNMNRTHSTHPDEEDDG 78

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS GSLLHIC LELGHEVCGRFYGNIQTVV
Sbjct: 79  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSGGSLLHICMLELGHEVCGRFYGNIQTVV 138

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 139 NNWLLLEG----------------------------------------------HSIGIG 152

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY+EIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 153 DTIADPQTYIEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 212

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAK+SLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 213 KTGGSAKRSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 272

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 273 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 332

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q   T+ LS+K FE KYRFD SNE+  
Sbjct: 333 VMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVELQYFPTIKLSNKAFEKKYRFDASNEK-- 390

Query: 492 LRNVSSLRRVVN 503
                 LRRV N
Sbjct: 391 -----YLRRVFN 397



 Score =  195 bits (496), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/170 (60%), Positives = 117/170 (68%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q   T+ LS+K FE
Sbjct: 320 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVELQYFPTIKLSNKAFE 379

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KYRFD SNE+ LRR+FNEDV++ +MGSGDVISELE E                      
Sbjct: 380 KKYRFDASNEKYLRRVFNEDVIKLMMGSGDVISELELE---------------------- 417

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        W++L +DREALR+IF SGESNVVLPCNL  +I+ +Q+
Sbjct: 418 -------------WDQLQKDREALRQIFPSGESNVVLPCNLQRMIWNVQK 454



 Score =  170 bits (431), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 244  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 303

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 304  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 345



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 52/59 (88%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            VAG D+LS  AN+NATLLFQCLVRSTLCTK V+E YRLS+EAFEWL+GEIE RFQQAQ 
Sbjct: 485  VAGTDRLSTLANDNATLLFQCLVRSTLCTKYVSEEYRLSTEAFEWLIGEIETRFQQAQA 543


>gi|38232265|gb|AAR14968.1| RNA polymerase II largest subunit [Forficula auricularia]
          Length = 445

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/432 (78%), Positives = 363/432 (84%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLPIWDGKMPQP ILKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPD+ED G
Sbjct: 17  KEQMMNLLMFLPIWDGKMPQPAILKPKPLWTGKQLFSLIIPGNVNLIRTHSTHPDEEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC+LELGHE+CG+FYGNIQTV+
Sbjct: 77  PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICYLELGHELCGQFYGNIQTVI 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 137 NNWLLYEG----------------------------------------------HSIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 151 DTIADPQTYLEIQRAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+G+KGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K+RFDP+NER  
Sbjct: 331 VMVHYDSTVRNSVGQLIQLRYGEDGLCGEIVEFQNLPTIKLSNKAFEKKFRFDPTNER-- 388

Query: 492 LRNVSSLRRVVN 503
                 LRRV N
Sbjct: 389 -----QLRRVFN 395



 Score =  201 bits (511), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 102/161 (63%), Positives = 115/161 (71%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 318 GYIQRRLIKAMESVMVHYDSTVRNSVGQLIQLRYGEDGLCGEIVEFQNLPTIKLSNKAFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDP+NERQLRR+FNEDV+RELMGSG+VISELE+E                      
Sbjct: 378 KKFRFDPTNERQLRRVFNEDVVRELMGSGEVISELERE---------------------- 415

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                        W++L +DREALR+IF SGES VVLPCNL
Sbjct: 416 -------------WDQLSKDREALRQIFPSGESKVVLPCNL 443



 Score =  170 bits (431), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDSTVRNSV 343


>gi|194245539|gb|ACF35379.1| RNA polymerase II large subunit [Dineutus sublineatus]
          Length = 562

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/433 (78%), Positives = 363/433 (83%), Gaps = 53/433 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++EQMMNILMFLP W+GKMP+P +LKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED 
Sbjct: 18  DKEQMMNILMFLPSWNGKMPRPALLKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDD 77

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHE+CGRFYG+IQTV
Sbjct: 78  GPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEICGRFYGDIQTV 137

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           +N WLLLEG                                              HSIGI
Sbjct: 138 INTWLLLEG----------------------------------------------HSIGI 151

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 152 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 211

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 212 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 271

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 272 FIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 331

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE K+RFDPSNER 
Sbjct: 332 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKSFEKKFRFDPSNER- 390

Query: 491 TLRNVSSLRRVVN 503
                  LRR+ N
Sbjct: 391 ------YLRRIFN 397



 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 104/170 (61%), Positives = 118/170 (69%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 320 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKSFE 379

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDPSNER LRRIFNED++R+LMGS DVISELE+E                      
Sbjct: 380 KKFRFDPSNERYLRRIFNEDIIRQLMGSADVISELERE---------------------- 417

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE+L +DRE LR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 418 -------------WEQLVKDRETLRQIFPSGESKVVLPCNLQRMIWNVQK 454



 Score =  170 bits (431), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 244  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 303

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 304  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 345



 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/58 (82%), Positives = 55/58 (94%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ 1010
            VAG+D+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ
Sbjct: 485  VAGDDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQ 542


>gi|324120578|dbj|BAJ78680.1| RNA polymerase II largest subunit [Chrysoperla nipponensis]
          Length = 1705

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/475 (76%), Positives = 383/475 (80%), Gaps = 23/475 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED LSKQANENATLLFQCL+RSTLCTK V+E++RLSSEAFEWL+GEIE RFQQAQ  
Sbjct: 1016 VAGEDHLSKQANENATLLFQCLIRSTLCTKCVSEDFRLSSEAFEWLIGEIETRFQQAQCA 1075

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1076 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1135

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1136 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVITEDQEFVN 1187

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1188 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1247

Query: 1180 LVLRIRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1237
            LVLRIRIMNSDD K   E     VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLP
Sbjct: 1248 LVLRIRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLP 1307

Query: 1238 QTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1297
            QTDSKKRI+IT++GEFKAIA+WLLETDGT +MKVLSERDVDPVRTFSNDICEIF VLGIE
Sbjct: 1308 QTDSKKRIVITDTGEFKAIAEWLLETDGTCMMKVLSERDVDPVRTFSNDICEIFSVLGIE 1367

Query: 1298 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1357
            AVRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF
Sbjct: 1368 AVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1427

Query: 1358 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 1412
            EETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK GIE+P
Sbjct: 1428 EETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKAGIELP 1482



 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/426 (79%), Positives = 361/426 (84%), Gaps = 47/426 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MNILMFLPIWDGKMPQP ILKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPDDED G
Sbjct: 549 KEQIMNILMFLPIWDGKMPQPAILKPKPLWTGKQIFSLIIPGNVNLIRTHSTHPDDEDDG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LG S+GSLLH+CFLELGHEVCG FYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGELIMGILCKKTLGASAGSLLHVCFLELGHEVCGLFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 669 NNWLLLEG----------------------------------------------HSIGIG 682

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ +IKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 683 DTIADPQTYLEIQNSIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 802

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS++ FE +++FDPSNER  
Sbjct: 863 VMVNYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTMPTIKLSNRAFERRFKFDPSNER-Y 921

Query: 492 LRNVSS 497
           LR + S
Sbjct: 922 LRRIFS 927



 Score =  265 bits (676), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 148/199 (74%), Positives = 159/199 (79%), Gaps = 17/199 (8%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1357 ICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1416

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK
Sbjct: 1417 QDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1476

Query: 890  DGIEIP-------LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAY-NALMSP--- 938
             GIE+P            MGG  GMFFG+ ATP S+SP  TPW   TP+Y +A  SP   
Sbjct: 1477 AGIELPLGIGMGGGLGIGMGGMGGMFFGTQATP-SISPG-TPWTMGTPSYASAGWSPGQG 1534

Query: 939  -GAAMTPGGPGFSPSVAGE 956
             G+ MTPGGP FSPS A +
Sbjct: 1535 LGSGMTPGGPSFSPSAASD 1553



 Score =  215 bits (548), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/154 (73%), Positives = 116/154 (75%), Gaps = 30/154 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1159 LRKVTANTAIYYDPDPQNTVITEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1218

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1219 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1250

Query: 1649 RIRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD K   +  E+ VDKMEDDMFLRCIE
Sbjct: 1251 RIRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIE 1284



 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 118/171 (69%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS++ FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTMPTIKLSNRAFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGS-GDVISELEKEMVDHFSWKQLRRIFNEDVLRE 710
            +++FDPSNER LRRIF+EDV+++L+GS GDVI ELE+E                     
Sbjct: 910 RRFKFDPSNERYLRRIFSEDVIKQLLGSGGDVIQELERE--------------------- 948

Query: 711 LMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                         WE+L +DRE LR+IF SGE+ VVLPCNL  +I+ +Q+
Sbjct: 949 --------------WEQLVKDRETLRQIFPSGENKVVLPCNLQRMIWNVQK 985



 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875



 Score =  160 bits (404), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1372 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1431

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1432 DVLMDAASHAEVDPMRG 1448



 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 507  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 549



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARPDWM+VTVLPVPPL VRPAVVM+GSA+NQ+ + + L
Sbjct: 223 EECFILGMDPKFARPDWMIVTVLPVPPLPVRPAVVMYGSAKNQDDLTHKL 272


>gi|324120568|dbj|BAJ78675.1| RNA polymerase II largest subunit [Metylophorus sp. E-43]
          Length = 1792

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/473 (76%), Positives = 385/473 (81%), Gaps = 22/473 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED LSKQANENATLLFQCL+RSTLCTK V+EN RLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 1018 VAGEDPLSKQANENATLLFQCLIRSTLCTKGVSENMRLSSEAFEWLIGEIETRFQQAQVA 1077

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1078 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1137

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFV 
Sbjct: 1138 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVITEDQEFVT 1189

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1190 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1249

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLR+RIMN+DD K QD+E+  DKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQT
Sbjct: 1250 LVLRLRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQT 1308

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            D+KKRI++TE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1309 DAKKRIVVTETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAV 1368

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1369 RKSVEKEMNQVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1428

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 1412
            TVDVLMDAA+HAE DPMRGVSENII+GQLPRMGTGCFDLLLD +KCK GIEIP
Sbjct: 1429 TVDVLMDAASHAELDPMRGVSENIILGQLPRMGTGCFDLLLDKDKCKAGIEIP 1481



 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/453 (76%), Positives = 373/453 (82%), Gaps = 56/453 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           +QEQMMNILMFLPIWDGKMP P ILKP+PLWTGKQVFSLIIPGNVNM RTHSTHPDDED 
Sbjct: 551 DQEQMMNILMFLPIWDGKMPIPAILKPRPLWTGKQVFSLIIPGNVNMIRTHSTHPDDEDD 610

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+W+SPGDTKV+VEHG L+MGILCK+SLGTS+GSLLHIC LELGHEVCG+FYGNIQTV
Sbjct: 611 GPYKWVSPGDTKVMVEHGELIMGILCKQSLGTSAGSLLHICMLELGHEVCGQFYGNIQTV 670

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           +N+WLLLEG                                              HSIGI
Sbjct: 671 INHWLLLEG----------------------------------------------HSIGI 684

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 685 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 744

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 745 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 804

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 805 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 864

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD T+RNSVGQLIQLRYGEDGL GE VE Q + T+ LS+K+FE ++RFD +NER 
Sbjct: 865 SVMVHYDGTIRNSVGQLIQLRYGEDGLAGETVEFQSLPTIKLSNKQFEKRFRFDATNER- 923

Query: 491 TLRNVSSLRRVVNSKPL--LIGCWK-LTSVEKE 520
                  LRR+ N   L  L+G    ++++EKE
Sbjct: 924 ------HLRRIFNEDVLRELMGSGDVISALEKE 950



 Score =  256 bits (654), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 145/215 (67%), Positives = 154/215 (71%), Gaps = 32/215 (14%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1356 ICEIFSVLGIEAVRKSVEKEMNQVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1415

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENII+GQLPRMGTGCFDLLLD +KCK
Sbjct: 1416 QDTGALMRCSFEETVDVLMDAASHAELDPMRGVSENIILGQLPRMGTGCFDLLLDKDKCK 1475

Query: 890  DGIEIP-LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNALMSP--GAAMT-- 943
             GIEIP    G M G  G+ FGSAATPS MSP  TPW    TP Y +  SP  G+ MT  
Sbjct: 1476 AGIEIPMSMGGGMMGGVGIMFGSAATPSMMSPSRTPWNMGQTPGYGSSWSPAIGSGMTPG 1535

Query: 944  -----------------------PGGPGFSPSVAG 955
                                   PGG G SPS  G
Sbjct: 1536 GPSFSPSGSSDASGLSPGYSPWSPGGGGVSPSSPG 1570



 Score =  216 bits (551), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 111/152 (73%), Positives = 116/152 (76%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFV VYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1161 LRKVTANTAIYYDPDPQNTVITEDQEFVTVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1220

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1221 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1252

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RIMN+DD K QD+E+  DKMEDDMFLRCIE
Sbjct: 1253 RLRIMNNDD-KGQDDEENQDKMEDDMFLRCIE 1283



 Score =  197 bits (500), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 103/170 (60%), Positives = 119/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD T+RNSVGQLIQLRYGEDGL GE VE Q + T+ LS+K+FE
Sbjct: 853 GYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAGETVEFQSLPTIKLSNKQFE 912

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            ++RFD +NER LRRIFNEDVLRELMGSGDVIS LEKE      W+QL+R          
Sbjct: 913 KRFRFDATNERHLRRIFNEDVLRELMGSGDVISALEKE------WEQLQR---------- 956

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR+IF SGE+ VVLPCNL  +I+ +Q+
Sbjct: 957 -------------------DREALRQIFPSGENRVVLPCNLTRMIWNVQK 987



 Score =  171 bits (432), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 777  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 836

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 837  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSV 878



 Score =  159 bits (403), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1371 SVEKEMNQVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1431 DVLMDAASHAELDPMRG 1447



 Score = 90.9 bits (224), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/50 (82%), Positives = 46/50 (92%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE +ILGMDPKFARPDWMLVTVLPVPPLSVRPAVVM+GSARNQ+ + + L
Sbjct: 226 EECLILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMYGSARNQDDLTHKL 275



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VEN+HVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFLD+
Sbjct: 510  VENLHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLDQ 552


>gi|324120524|dbj|BAJ78653.1| RNA polymerase II largest subunit [Ephemera japonica]
          Length = 1660

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/430 (79%), Positives = 358/430 (83%), Gaps = 53/430 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNIL+FLPIWDGKMPQP ILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDE+SG
Sbjct: 554 KEQMMNILLFLPIWDGKMPQPAILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDENSG 613

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHE CGRFYGNIQTVV
Sbjct: 614 PYNWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEECGRFYGNIQTVV 673

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLLLEG                                              HSIGIG
Sbjct: 674 NTWLLLEG----------------------------------------------HSIGIG 687

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADP TY+EIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 688 DTIADPNTYIEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 747

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 748 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 807

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 808 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 867

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ L++ +FE  YRFDPSNER  
Sbjct: 868 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLANDEFERGYRFDPSNER-- 925

Query: 492 LRNVSSLRRV 501
                 LRRV
Sbjct: 926 -----HLRRV 930



 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/504 (73%), Positives = 394/504 (78%), Gaps = 29/504 (5%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED+LS QANENATLLFQCLVRS LCTK VA+ YRLS+EAFEWLVGEIE RFQQAQ  
Sbjct: 1020 VAGEDRLSTQANENATLLFQCLVRSILCTKNVADKYRLSAEAFEWLVGEIETRFQQAQCQ 1079

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1080 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1139

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN
Sbjct: 1140 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIGEDQEFVN 1191

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            +YYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFGDDLNCIFNDDNAEK
Sbjct: 1192 IYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINLGFGDDLNCIFNDDNAEK 1251

Query: 1180 LVLRIRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1237
            LVLRIRIMNS  +D K  D+E+  DKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLP
Sbjct: 1252 LVLRIRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLP 1311

Query: 1238 QTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1297
            QTDSKK+I++T++G FKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIE
Sbjct: 1312 QTDSKKKIVVTDNGRFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIE 1371

Query: 1298 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1357
            AVRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF
Sbjct: 1372 AVRKSVEKEMNQVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1431

Query: 1358 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP----- 1412
            EETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTG FDLLLDAEKCK GIEIP     
Sbjct: 1432 EETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGAFDLLLDAEKCKHGIEIPTHLGA 1491

Query: 1413 -LATGMMGGPAGMFFGSAATPSSI 1435
                G  G   G+F+  +ATPSS+
Sbjct: 1492 GALAGAPGLAGGVFYSGSATPSSM 1515



 Score =  286 bits (731), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 147/192 (76%), Positives = 157/192 (81%), Gaps = 12/192 (6%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1361 ICEIFSVLGIEAVRKSVEKEMNQVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1420

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTG FDLLLDAEKCK
Sbjct: 1421 QDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGAFDLLLDAEKCK 1480

Query: 890  DGIEIP------LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSP--GA 940
             GIEIP         G  G   G+F+  +ATPSSMSP MTPW Q  TP+Y +  SP  G+
Sbjct: 1481 HGIEIPTHLGAGALAGAPGLAGGVFYSGSATPSSMSPHMTPWNQGGTPSYASAWSPGLGS 1540

Query: 941  AMTPGGPGFSPS 952
             MTPGGPGFSPS
Sbjct: 1541 GMTPGGPGFSPS 1552



 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/154 (71%), Positives = 115/154 (74%), Gaps = 30/154 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVN+YYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1163 LRKVTANTAIYYDPDPQNTVIGEDQEFVNIYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1222

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1223 LTMEQIAEKINLGFG----------------------------DDLNCIFNDDNAEKLVL 1254

Query: 1649 RIRIMN--SDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN  S+D K  D+E+  DKMEDDMFLRCIE
Sbjct: 1255 RIRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIE 1288



 Score =  186 bits (473), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 113/170 (66%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ L++ +FE
Sbjct: 855 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLANDEFE 914

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             YRFDPSNER LRR+F EDV++ELMGS DVISELE+E                      
Sbjct: 915 RGYRFDPSNERHLRRVFTEDVVKELMGSADVISELERE---------------------- 952

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE L +DR+++R+ F SG+  VVLPCNL  +I+  Q+
Sbjct: 953 -------------WELLKKDRDSMRQTFPSGDDKVVLPCNLERMIWNAQK 989



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 779  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 838

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 839  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 880



 Score =  160 bits (404), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1376 SVEKEMNQVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1435

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1436 DVLMDAASHAEVDPMRG 1452



 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMT+RDVF++K
Sbjct: 512  VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTRRDVFIEK 554



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  I+GMDPK+ARPDWM+ TVLPVPPL VRPAVVM+GSARNQ+ + + L
Sbjct: 228 EECFIMGMDPKYARPDWMVATVLPVPPLCVRPAVVMYGSARNQDDLTHKL 277


>gi|31127026|gb|AAF26640.2|AF138990_1 RNA polymerase II largest subunit [Machiloides banksi]
          Length = 445

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/456 (75%), Positives = 369/456 (80%), Gaps = 56/456 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILM LPIWDGKMPQP ILKPKP+WTGKQVFSLIIPGNVNM RTHSTHPDDED G
Sbjct: 17  KEQMMNILMHLPIWDGKMPQPAILKPKPMWTGKQVFSLIIPGNVNMIRTHSTHPDDEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LG S+GSLLHIC LELGHEV GRFYGNIQTV+
Sbjct: 77  PYKWISPGDTKVMVEHGELVMGILCKKTLGASAGSLLHICMLELGHEVAGRFYGNIQTVI 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 137 NNWLLLEG----------------------------------------------HSIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 151 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD T+RNSVGQLIQLRYGEDGL GE VE Q   T+ LS+K FE K++FDP+NER  
Sbjct: 331 VMVHYDGTIRNSVGQLIQLRYGEDGLAGETVEFQSQPTIKLSNKAFEKKFKFDPTNER-- 388

Query: 492 LRNVSSLRRVVNS---KPLLIGCWKLTSVEKEMNTV 524
                 LRR+ N    K L+     ++ +E+E + +
Sbjct: 389 -----YLRRIFNEDIMKELMGSGEVISELEREWDQL 419



 Score =  183 bits (464), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 110/161 (68%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD T+RNSVGQLIQLRYGEDGL GE VE Q   T+ LS+K FE
Sbjct: 318 GYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAGETVEFQSQPTIKLSNKAFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIFNED+++ELMGSG+VISELE+                       
Sbjct: 378 KKFKFDPTNERYLRRIFNEDIMKELMGSGEVISELER----------------------- 414

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                       EW++L +DREALR IF +G++  VLPCNL
Sbjct: 415 ------------EWDQLQKDREALRLIFPNGDNKAVLPCNL 443



 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSV 343


>gi|194245528|gb|ACF35373.1| RNA polymerase II large subunit [Sialis sp. ALW-2008]
          Length = 555

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/418 (80%), Positives = 355/418 (84%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVN+ RTHSTHPD+ED G
Sbjct: 19  KEQMMNILMFLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNLIRTHSTHPDEEDDG 78

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEVCGRFYGNIQTV+
Sbjct: 79  PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHEVCGRFYGNIQTVI 138

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLLLEG                                              HSIGIG
Sbjct: 139 NTWLLLEG----------------------------------------------HSIGIG 152

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 153 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 212

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQ IACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 213 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQGIACVGQQNVEGKRIPFGFRKRTLPHF 272

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 273 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 332

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS++ FE K++FDP NER
Sbjct: 333 VMVPYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQSLPTVKLSNRAFEKKFKFDPGNER 390



 Score =  174 bits (441), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 94/171 (54%), Positives = 113/171 (66%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS++ FE
Sbjct: 320 GYIQRRLIKAMESVMVPYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQSLPTVKLSNRAFE 379

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGS-GDVISELEKEMVDHFSWKQLRRIFNEDVLRE 710
            K++FDP NER LRR+F E+++R+LM S GD+I  LEKE      W Q            
Sbjct: 380 KKFKFDPGNERYLRRVFTEEIVRQLMASGGDLIQALEKE------WDQ------------ 421

Query: 711 LMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                            L +DREALR+IF SG++ VVLPCNL  +I+ +Q+
Sbjct: 422 -----------------LVKDREALRQIFPSGDNKVVLPCNLQRMIWNVQK 455



 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 86/102 (84%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q IACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 244  SQGIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 303

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 304  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVPYDGTVRNSV 345



 Score =  103 bits (257), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/58 (82%), Positives = 53/58 (91%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ 1010
            VAG+D LS+QANENATLLF+CLVRSTLCTK VAE +RLS EAFEWL+GEIE RFQQAQ
Sbjct: 486  VAGDDPLSRQANENATLLFRCLVRSTLCTKRVAEEFRLSHEAFEWLIGEIETRFQQAQ 543


>gi|31127010|gb|AAF26623.2|AF138973_1 RNA polymerase II largest subunit [Ctenolepisma lineata]
          Length = 624

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/458 (75%), Positives = 373/458 (81%), Gaps = 56/458 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILM LPIWDGKMP P ILKPKPLWTGKQVFSLIIPGNVN+TRTHSTHPDDED G
Sbjct: 196 KEQMMNILMHLPIWDGKMPYPSILKPKPLWTGKQVFSLIIPGNVNVTRTHSTHPDDEDDG 255

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LG+S+GSLLHIC LELGHEVCGRFYGNIQTVV
Sbjct: 256 PYKWISPGDTKVMVEHGELIMGILCKKTLGSSAGSLLHICMLELGHEVCGRFYGNIQTVV 315

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 316 NNWLLLEG----------------------------------------------HSIGIG 329

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 330 DTIADPQTYTEIQRAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 389

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 390 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 449

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 450 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 509

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS++ FE +++FDP+NER  
Sbjct: 510 VMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQSLPTLKLSNRVFEKRFKFDPTNER-- 567

Query: 492 LRNVSSLRRVVNSKPL--LIGCWKLTS-VEKEMNTVLQ 526
                 LRRV     L  L+G   + S +EKE   +++
Sbjct: 568 -----YLRRVFTEDILRELMGSGDVISELEKEWEQLVE 600



 Score =  193 bits (490), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 98/161 (60%), Positives = 114/161 (70%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS++ FE
Sbjct: 497 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQSLPTLKLSNRVFE 556

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FDP+NER LRR+F ED+LRELMGSGDVISELEK                       
Sbjct: 557 KRFKFDPTNERYLRRVFTEDILRELMGSGDVISELEK----------------------- 593

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                       EWE+L EDREALR+IF +GE++VVLPCNL
Sbjct: 594 ------------EWEQLVEDREALRKIFPTGETSVVLPCNL 622



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 421  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 480

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 481  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 522



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/43 (93%), Positives = 43/43 (100%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 154  VENIHVTPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLEK 196


>gi|31127016|gb|AAF26628.2|AF138978_1 RNA polymerase II largest subunit [Eumesocampa frigilis]
          Length = 445

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/455 (75%), Positives = 370/455 (81%), Gaps = 53/455 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQM NILM LPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVNM RTHS HPD+ED G
Sbjct: 17  KEQMFNILMHLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNMIRTHSAHPDEEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICF+ELGHEVCG+FYGNIQTV+
Sbjct: 77  PYKWISPGDTKVMVEHGDLVMGILCKKTLGTSAGSLLHICFVELGHEVCGQFYGNIQTVI 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 137 NNWLLLEG----------------------------------------------HSIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           D+IADPQTYLEIQ  IKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 151 DSIADPQTYLEIQKTIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD T+RNSVGQLIQLRYGEDGL GE VE Q + TV LS++ FE K++FDPSNER  
Sbjct: 331 VMVHYDGTIRNSVGQLIQLRYGEDGLAGEHVEFQSLPTVKLSNRAFEKKFKFDPSNER-Y 389

Query: 492 LRNVSS---LRRVVNSKPLLIGC---WKLTSVEKE 520
           LR V +   +R V+ S  ++      W   S ++E
Sbjct: 390 LRRVFTEDIMREVMGSGDVISALEREWGQLSSDRE 424



 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/161 (58%), Positives = 109/161 (67%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD T+RNSVGQLIQLRYGEDGL GE VE Q + TV LS++ FE
Sbjct: 318 GYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAGEHVEFQSLPTVKLSNRAFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDPSNER LRR+F ED++RE+MGSGDVIS LE                        
Sbjct: 378 KKFKFDPSNERYLRRVFTEDIMREVMGSGDVISALE------------------------ 413

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                      +EW +L  DRE+LR+IF SGE+ VVLPCNL
Sbjct: 414 -----------REWGQLSSDRESLRQIFPSGENKVVLPCNL 443



 Score =  171 bits (432), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSV 343


>gi|242011894|ref|XP_002426678.1| predicted protein [Pediculus humanus corporis]
 gi|212510849|gb|EEB13940.1| predicted protein [Pediculus humanus corporis]
          Length = 1885

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/503 (72%), Positives = 391/503 (77%), Gaps = 32/503 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED LSKQANENATLLFQCLVRSTLCTK V+E+ RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 1008 VAGEDHLSKQANENATLLFQCLVRSTLCTKCVSEDMRLSTEAFEWLIGEIETRFQQAQCA 1067

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
                VG    +    P         HF        + G      +  ++     PS   F
Sbjct: 1068 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1127

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFV 
Sbjct: 1128 --------LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIEEDQEFVT 1179

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1180 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1239

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLR+RIMN+D+ K+ DEE+  DKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 
Sbjct: 1240 LVLRLRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQN 1298

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            DSKKRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRT+SNDICEIF VLGIEAV
Sbjct: 1299 DSKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTYSNDICEIFSVLGIEAV 1358

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1359 RKSVEKEMNQVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1418

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM-M 1418
            TVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGT         +KCK GIEIP++ G  M
Sbjct: 1419 TVDVLMDAASHAELDPMRGVSENIIMGQLPRMGT---------DKCKAGIEIPMSIGHGM 1469

Query: 1419 GGPAGMFFGSAATPSSIPGPPAW 1441
                GM FG+A TPS  P    W
Sbjct: 1470 MSSVGMMFGNAVTPSMSPQMTPW 1492



 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/452 (73%), Positives = 353/452 (78%), Gaps = 65/452 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 551 KEQMMNILMFLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDDG 610

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY       T           G   +K+LGTS+GSLLHIC LELGHEVCG+FYGNIQTV+
Sbjct: 611 PYNCCGARRT---------YYGNFVQKTLGTSAGSLLHICMLELGHEVCGQFYGNIQTVI 661

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 662 NNWLLLEG----------------------------------------------HSIGIG 675

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 676 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 735

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 736 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 795

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 796 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 855

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE ++RFD +NER  
Sbjct: 856 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQTLPTIKLSNKAFEKRFRFDATNER-- 913

Query: 492 LRNVSSLRRVVNSKPL--LIGCWKLTS-VEKE 520
                 LRR+ N   L  L+G  ++ S +EKE
Sbjct: 914 -----YLRRIFNENILKELMGSGEVISYLEKE 940



 Score =  250 bits (638), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 132/178 (74%), Positives = 142/178 (79%), Gaps = 17/178 (9%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1346 ICEIFSVLGIEAVRKSVEKEMNQVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1405

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGT         +KCK
Sbjct: 1406 QDTGALMRCSFEETVDVLMDAASHAELDPMRGVSENIIMGQLPRMGT---------DKCK 1456

Query: 890  DGIEIPLATGM-MGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNALMSP--GAAMT 943
             GIEIP++ G  M    GM FG+A TP SMSPQMTPW Q  TPAY +  SP  G+ MT
Sbjct: 1457 AGIEIPMSIGHGMMSSVGMMFGNAVTP-SMSPQMTPWNQGETPAYVSAWSPHAGSGMT 1513



 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/152 (72%), Positives = 116/152 (76%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFV VYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1151 LRKVTANTAIYYDPDPQNTVIEEDQEFVTVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1210

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1211 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1242

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RIMN+D+ K+ DEE+  DKMEDDMFLRCIE
Sbjct: 1243 RLRIMNNDE-KVTDEEENQDKMEDDMFLRCIE 1273



 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 100/170 (58%), Positives = 118/170 (69%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 843 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQTLPTIKLSNKAFE 902

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            ++RFD +NER LRRIFNE++L+ELMGSG+VIS LEKE      W QL++          
Sbjct: 903 KRFRFDATNERYLRRIFNENILKELMGSGEVISYLEKE------WDQLQK---------- 946

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR+IF SGE+ VVLPCNL  +I+ +Q+
Sbjct: 947 -------------------DREALRQIFPSGENKVVLPCNLQRMIWNVQK 977



 Score =  171 bits (432), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 767  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 826

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 827  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 868



 Score =  159 bits (403), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 75/77 (97%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1361 SVEKEMNQVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1420

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAA+HAE DPMRG
Sbjct: 1421 DVLMDAASHAELDPMRG 1437



 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/50 (82%), Positives = 46/50 (92%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE +ILGMDPKFARPDWMLVTVLPVPPLSVRPAVVM+GSARNQ+ + + L
Sbjct: 225 EECLILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMYGSARNQDDLTHKL 274



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VEN+HVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 509  VENLHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 551


>gi|38232349|gb|AAR15010.1| RNA polymerase II largest subunit [Podura aquatica]
          Length = 445

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/419 (79%), Positives = 355/419 (84%), Gaps = 46/419 (10%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++EQMMN+LMFLPIWDGKMPQP ILKPKPLWTGKQ+F+LIIPGN+N+ RTH+THPDDED 
Sbjct: 16  DKEQMMNLLMFLPIWDGKMPQPAILKPKPLWTGKQLFTLIIPGNINLIRTHATHPDDEDD 75

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICF+ELGHEVCG+FYGNIQTV
Sbjct: 76  GPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFVELGHEVCGQFYGNIQTV 135

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNNWLL EG                                              HSIGI
Sbjct: 136 VNNWLLYEG----------------------------------------------HSIGI 149

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADP TYLEIQ  IKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 150 GDTIADPNTYLEIQKTIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 209

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 210 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 269

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 270 FIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 329

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           SVM+HYD TVRNSVGQLIQLRYGEDGL GEAVE Q + T+ LS+K FE K++ D SNER
Sbjct: 330 SVMIHYDGTVRNSVGQLIQLRYGEDGLAGEAVEFQSLPTIKLSNKAFESKFKLDLSNER 388



 Score =  171 bits (432), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  I+YD   +N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMIHYDGTVRNSV 343



 Score =  163 bits (413), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 83/161 (51%), Positives = 105/161 (65%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVM+HYD TVRNSVGQLIQLRYGEDGL GEAVE Q + T+ LS+K FE
Sbjct: 318 GYIQRRLIKAMESVMIHYDGTVRNSVGQLIQLRYGEDGLAGEAVEFQSLPTIKLSNKAFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++ D SNER+ +  +N++V++++M SG VIS +E                        
Sbjct: 378 SKFKLDLSNERKXKIYYNDEVMKDIMSSGKVISAIE------------------------ 413

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                      +EW++L  DRE LR+IF +GE+ VVLPCNL
Sbjct: 414 -----------REWKQLASDREDLRKIFPTGENKVVLPCNL 443


>gi|31127038|gb|AAF26658.2|AF139008_1 RNA polymerase II largest subunit [Speleonectes tulumensis]
          Length = 636

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/452 (75%), Positives = 367/452 (81%), Gaps = 56/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMMN+LMFLPIWDGKMPQP ILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 208 KDQMMNLLMFLPIWDGKMPQPAILKPKPLWTGKQLFSLIIPGNVNMIRTHSTHPDEEDDG 267

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGI+CKK+LGTS+GSLLHIC LELGHEVCG FYGNIQTV+
Sbjct: 268 PYKWISPGDTKVMVEHGELVMGIMCKKTLGTSAGSLLHICMLELGHEVCGHFYGNIQTVI 327

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 328 NNWLLLEG----------------------------------------------HSIGIG 341

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYL+IQ  IKKAKEDVI+VI KAHN +LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 342 DTIADPQTYLDIQNTIKKAKEDVIDVIHKAHNDELEPTPGNTLRQTFENKVNRILNDARD 401

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 402 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 461

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 462 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 521

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE KY+FD +NER  
Sbjct: 522 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQSLPTVKLSNKAFEKKYKFDATNER-- 579

Query: 492 LRNVSSLRRVVNS---KPLLIGCWKLTSVEKE 520
                 LRRV N    K L+     ++ +EKE
Sbjct: 580 -----YLRRVFNEDIMKELMGSGEVISELEKE 606



 Score =  185 bits (470), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/161 (59%), Positives = 109/161 (67%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 509 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQSLPTVKLSNKAFE 568

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KY+FD +NER LRR+FNED+++ELMGSG+VISELEK                       
Sbjct: 569 KKYKFDATNERYLRRVFNEDIMKELMGSGEVISELEK----------------------- 605

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                       EWE+L +DR+ LR IF   E+ VVLPCNL
Sbjct: 606 ------------EWEQLNKDRDTLRMIFPLAENKVVLPCNL 634



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 433  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 492

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 493  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 534



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +ENIHVTPRQIITPQ N+PVMGIVQDTL AVRKMTKRDVFL+K
Sbjct: 166  IENIHVTPRQIITPQANKPVMGIVQDTLCAVRKMTKRDVFLEK 208


>gi|31127052|gb|AAC03140.2| RNA polymerase II largest subunit [Pedetontus saltator]
          Length = 722

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/432 (78%), Positives = 355/432 (82%), Gaps = 53/432 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILM LPIWDGKMPQP ILKPKP+WTGKQVFSLIIPGNVNM RTHSTHPDDED G
Sbjct: 196 KEQMMNILMHLPIWDGKMPQPAILKPKPMWTGKQVFSLIIPGNVNMIRTHSTHPDDEDDG 255

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LG S+GSLLHIC LELGHEV GRFYGNIQTV+
Sbjct: 256 PYKWISPGDTKVMVEHGELVMGILCKKTLGASAGSLLHICMLELGHEVAGRFYGNIQTVI 315

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 316 NNWLLLEG----------------------------------------------HSIGIG 329

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 330 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 389

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 390 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 449

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IK   GPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 450 IKXXXGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 509

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD T+RNSVGQLIQLRYGEDGL GE VE Q   T+ LS+K FE K++FDP+NER  
Sbjct: 510 VMVHYDGTIRNSVGQLIQLRYGEDGLAGETVEFQTQPTIKLSNKVFEKKFKFDPTNER-- 567

Query: 492 LRNVSSLRRVVN 503
                 LRR+ N
Sbjct: 568 -----YLRRIFN 574



 Score =  184 bits (467), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/253 (42%), Positives = 141/253 (55%), Gaps = 61/253 (24%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD T+RNSVGQLIQLRYGEDGL GE VE Q   T+ LS+K FE
Sbjct: 497 GYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAGETVEFQTQPTIKLSNKVFE 556

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIFNED+++ELMGSG+VISELE+E      W+QL++          
Sbjct: 557 KKFKFDPTNERYLRRIFNEDIMKELMGSGEVISELERE------WEQLQK---------- 600

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQRWKLWGNENLR 771
                              DR+ LR+IF +G++  VLPCNL  +I+ +Q+          
Sbjct: 601 -------------------DRDCLRQIFPNGDNKTVLPCNLQRMIWNVQK---------- 631

Query: 772 FLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQD 831
                IF       + K   T L    +    +HL   C ++  + HL  +       ++
Sbjct: 632 -----IF------HINKRATTDLSPLKVIRGVQHLLSKCIIVAGEDHLSKLA-----NEN 675

Query: 832 TGALMRCSFEETV 844
              L RC    T+
Sbjct: 676 ATLLFRCLVRSTL 688



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 85/102 (83%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIK   GPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 421  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKXXXGPESRGFVENSYLAGLTPSEFFFHAM 480

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 481  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSV 522



 Score =  105 bits (263), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/59 (84%), Positives = 53/59 (89%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            VAGED LSK ANENATLLF+CLVRSTLCT+ VAE +RLSSEAFEWL GEIE RFQQAQV
Sbjct: 662  VAGEDHLSKLANENATLLFRCLVRSTLCTRRVAEEFRLSSEAFEWLTGEIETRFQQAQV 720



 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIH+T RQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 154  VENIHITXRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 196


>gi|427777531|gb|JAA54217.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
          Length = 1941

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/511 (69%), Positives = 396/511 (77%), Gaps = 55/511 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V GED LS QANENAT LF+ L+R+TLC+K VAE +RLS+E+FEWL+GEIE RF Q+Q  
Sbjct: 1020 VPGEDHLSIQANENATFLFRALLRATLCSKRVAEEFRLSTESFEWLLGEIETRFHQSQGQ 1079

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1080 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINISKKPK----- 1132

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                    TPS   F        L   A + AE   +VL       L +VTANTAIYYDP
Sbjct: 1133 --------TPSLTVF--------LTGAAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDP 1176

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLR+ELDRKRMTDKKLTME I+EKINAGF
Sbjct: 1177 DPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRVELDRKRMTDKKLTMEQIAEKINAGF 1236

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ
Sbjct: 1237 GDDLNCIFNDDNAEKLVLRIRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQ 1296

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIEAI KVYMHLP TD+KKRI++TE+GEFKAIA+WLLETDGTSLM+VLSERDVDPVRT+S
Sbjct: 1297 GIEAITKVYMHLPTTDNKKRIVLTETGEFKAIAEWLLETDGTSLMRVLSERDVDPVRTYS 1356

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIF VLGIEAVRK+VEKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 1357 NDICEIFAVLGIEAVRKAVEKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 1416

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTGALMRCSFEETVDVL+DAA+HAE D ++GVSENIIMGQL RMGTG FDL+LDAEK
Sbjct: 1417 NRQDTGALMRCSFEETVDVLLDAASHAEVDYLKGVSENIIMGQLARMGTGAFDLMLDAEK 1476

Query: 1405 CKDGIEIPLATGMMG---GPAGMFFGSAATP 1432
            CK GIEIP++  MMG   GP G+FFGSAATP
Sbjct: 1477 CKYGIEIPMSLPMMGSLCGP-GVFFGSAATP 1506



 Score =  624 bits (1608), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 302/424 (71%), Positives = 339/424 (79%), Gaps = 47/424 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMM ILMFLPIWDGKMP P +LKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPD+ED G
Sbjct: 554 KDQMMTILMFLPIWDGKMPMPAVLKPKPLWTGKQIFSLIIPGNVNLIRTHSTHPDEEDDG 613

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++EHG L+ GI+CKK++G SSGSL+H+ F ELGHEV G FYG+IQTVV
Sbjct: 614 PYKWISPGDTKVLIEHGELISGIVCKKTVGASSGSLMHVVFAELGHEVAGAFYGHIQTVV 673

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLLLEG                                              H+IGIG
Sbjct: 674 NAWLLLEG----------------------------------------------HTIGIG 687

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD QT+++I+  I+KAK DVI+VI+KAHN +LEP+PGNTLRQTFENQVNRILNDARD
Sbjct: 688 DTIADKQTFIDIKNTIEKAKHDVIDVIEKAHNDELEPSPGNTLRQTFENQVNRILNDARD 747

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 748 KTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 807

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 808 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 867

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VM+ YD TVRNS GQ+IQLRYGEDGL G  VE Q + T+  S+K FE K+RFD  NER  
Sbjct: 868 VMIAYDGTVRNSNGQVIQLRYGEDGLDGGTVEFQSMPTLKPSNKSFEKKFRFDACNER-Y 926

Query: 492 LRNV 495
           LR V
Sbjct: 927 LRKV 930



 Score =  278 bits (712), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 170/319 (53%), Positives = 209/319 (65%), Gaps = 33/319 (10%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S D   + E+E VD        R    ++L ++   G  
Sbjct: 1240 LNCIFNDDNAEKLVLRIRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQG-- 1297

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVVLP-------CNLMEVIF--ILQRWKLWGN 767
            I  + K +  L       R + + +GE   +          +LM V+    +   + + N
Sbjct: 1298 IEAITKVYMHLPTTDNKKRIVLTETGEFKAIAEWLLETDGTSLMRVLSERDVDPVRTYSN 1357

Query: 768  ENLRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 824
            +    +C+I  VL   +VRK+VEKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 1358 D----ICEIFAVLGIEAVRKAVEKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITR 1413

Query: 825  HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
            HGINRQDTGALMRCSFEETVDVL+DAA+HAE D ++GVSENIIMGQL RMGTG FDL+LD
Sbjct: 1414 HGINRQDTGALMRCSFEETVDVLLDAASHAEVDYLKGVSENIIMGQLARMGTGAFDLMLD 1473

Query: 885  AEKCKDGIEIPLATGMMG---GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALMSP- 938
            AEKCK GIEIP++  MMG   GP G+FFGSAATP + MSPQMTPWA  +TPAY +  SP 
Sbjct: 1474 AEKCKYGIEIPMSLPMMGSLCGP-GVFFGSAATPMAGMSPQMTPWATGATPAYGSGWSPN 1532

Query: 939  -GAAMTPGGPGFSPSVAGE 956
             G+ MTPGG GFSPS + +
Sbjct: 1533 VGSGMTPGGAGFSPSASSD 1551



 Score =  230 bits (586), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLR+ELDRKRMTDKK
Sbjct: 1163 LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRVELDRKRMTDKK 1222

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1223 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1254

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDD K QDEE+ VDKMEDD+FLRCIE
Sbjct: 1255 RIRIMNSDDGKFQDEEEQVDKMEDDVFLRCIE 1286



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/110 (73%), Positives = 89/110 (80%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 770  GAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 829

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            PSEFFFHAMGGREGLIDTAVKTAET  +   L +   +  I YD   +N+
Sbjct: 830  PSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIAYDGTVRNS 879



 Score =  163 bits (412), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVM+ YD TVRNS GQ+IQLRYGEDGL G  VE Q + T+  S+K FE
Sbjct: 855 GYIQRRLIKAMESVMIAYDGTVRNSNGQVIQLRYGEDGLDGGTVEFQSMPTLKPSNKSFE 914

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD  NER LR++F EDV+RELMGS   +SELEKE      W++L++          
Sbjct: 915 KKFRFDACNERYLRKVFTEDVVRELMGSATAVSELEKE------WERLKK---------- 958

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DRE LR IF +G+S VVLPCNL  +++  Q+
Sbjct: 959 -------------------DREILRTIFPTGDSKVVLPCNLQRMLWNAQK 989



 Score =  141 bits (355), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 71/77 (92%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            +VEKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1374 AVEKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1433

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL+DAA+HAE D ++G
Sbjct: 1434 DVLLDAASHAEVDYLKG 1450



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 45/50 (90%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE +ILGMDP++A+PDWMLVTVLPVPPL+VRPAVVM GSARNQ+ + + L
Sbjct: 228 EECMILGMDPRYAKPDWMLVTVLPVPPLAVRPAVVMFGSARNQDDLTHKL 277



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 44/54 (81%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            VE + + PRQIITPQ+N+PVMGIVQDTLTAVRKMTKRD+FL+K    T + + P
Sbjct: 512  VEQLAMVPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDIFLEKDQMMTILMFLP 565


>gi|241301792|ref|XP_002407502.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
            scapularis]
 gi|215497181|gb|EEC06675.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
            scapularis]
          Length = 1937

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/511 (69%), Positives = 397/511 (77%), Gaps = 55/511 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V GED LS QANENATLLF+ L+R+TLC+K VAE +RLS+E+FEWL+GEIE RF Q+Q  
Sbjct: 1023 VPGEDHLSIQANENATLLFRSLLRATLCSKRVAEEFRLSTESFEWLLGEIETRFHQSQGQ 1082

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                    TPS   F        L   A + AE   +VL       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LTGAAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQNTVI EDQEFVNVYYEMPDFDPTRIS WLLR+ELDRKRMTDKKLTME I+EKINAGF
Sbjct: 1180 DPQNTVIAEDQEFVNVYYEMPDFDPTRISTWLLRVELDRKRMTDKKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIEAI KVYMHLP TD+KKRI++TE+GEFKAIA+WLLETDGTSLM+VLSERDVDPVRT+S
Sbjct: 1300 GIEAITKVYMHLPTTDNKKRIVLTETGEFKAIAEWLLETDGTSLMRVLSERDVDPVRTYS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIF VLGIEAVRK+VEKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 1360 NDICEIFAVLGIEAVRKAVEKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTGALMRCSFEETVDVL+DAA+HAE D ++GVSENIIMGQL RMGTGCFDL+LDAEK
Sbjct: 1420 NRQDTGALMRCSFEETVDVLLDAASHAEVDYLKGVSENIIMGQLARMGTGCFDLMLDAEK 1479

Query: 1405 CKDGIEIPLA-TGMMG--GPAGMFFGSAATP 1432
            CK GIEIP+   GMMG  GP G+FFGSAATP
Sbjct: 1480 CKYGIEIPMNLPGMMGPLGP-GVFFGSAATP 1509



 Score =  595 bits (1533), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 285/392 (72%), Positives = 319/392 (81%), Gaps = 46/392 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMM ILMFLPIWDGKMP P ILKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPD+ED G
Sbjct: 557 KDQMMTILMFLPIWDGKMPMPAILKPKPLWTGKQIFSLIIPGNVNLIRTHSTHPDEEDDG 616

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++EHG L+ GI+CKK++G SSGSL+H+ F ELGH+V G FYG+IQTVV
Sbjct: 617 PYKWISPGDTKVLIEHGELISGIVCKKTVGASSGSLMHVVFNELGHQVAGLFYGHIQTVV 676

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLLLEG                                              H+IGIG
Sbjct: 677 NAWLLLEG----------------------------------------------HTIGIG 690

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD QT+++I+  I+KAK DVI+VI+KAHN +LEP+PGNTLRQTFENQVNRILNDARD
Sbjct: 691 DTIADKQTFIDIKNTIEKAKHDVIDVIEKAHNDELEPSPGNTLRQTFENQVNRILNDARD 750

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 751 KTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 810

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 811 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 870

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE 463
           VM+ YD TVRNS  Q+IQLRYGEDGL G AV+
Sbjct: 871 VMIAYDGTVRNSNSQVIQLRYGEDGLDGVAVD 902



 Score =  278 bits (711), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 143/194 (73%), Positives = 161/194 (82%), Gaps = 11/194 (5%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRK+VEKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1362 ICEIFAVLGIEAVRKAVEKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 1421

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALMRCSFEETVDVL+DAA+HAE D ++GVSENIIMGQL RMGTGCFDL+LDAEKCK
Sbjct: 1422 QDTGALMRCSFEETVDVLLDAASHAEVDYLKGVSENIIMGQLARMGTGCFDLMLDAEKCK 1481

Query: 890  DGIEIPLA-TGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALMSP--GAAM 942
             GIEIP+   GMMG  GP G+FFGSAATP + MSPQMTPW Q +TP+Y +  SP  G+ M
Sbjct: 1482 YGIEIPMNLPGMMGPLGP-GVFFGSAATPLAGMSPQMTPWGQGATPSYGSGWSPGLGSGM 1540

Query: 943  TPGGPGFSPSVAGE 956
            TPG  GFSPS A +
Sbjct: 1541 TPGAAGFSPSAASD 1554



 Score =  224 bits (571), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 112/152 (73%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRIS WLLR+ELDRKRMTDKK
Sbjct: 1166 LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTRISTWLLRVELDRKRMTDKK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN+D SK QDEE+ VDKMEDD+FLRCIE
Sbjct: 1258 RIRIMNNDGSKYQDEEEQVDKMEDDVFLRCIE 1289



 Score =  170 bits (431), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 97/136 (71%), Gaps = 4/136 (2%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
            PSEFFFHAMGGREGLIDTAVKTAET  +   L +   +  I YD     TV   + + + 
Sbjct: 833  PSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIAYD----GTVRNSNSQVIQ 888

Query: 1120 VYYEMPDFDPTRISPW 1135
            + Y     D   + P+
Sbjct: 889  LRYGEDGLDGVAVDPF 904



 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 71/77 (92%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            +VEKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1377 AVEKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL+DAA+HAE D ++G
Sbjct: 1437 DVLLDAASHAEVDYLKG 1453



 Score =  128 bits (322), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/178 (44%), Positives = 97/178 (54%), Gaps = 51/178 (28%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE--------HQRIDTV 643
           GYIQRRLIKAMESVM+ YD TVRNS  Q+IQLRYGEDGL G AV+         Q   T+
Sbjct: 858 GYIQRRLIKAMESVMIAYDGTVRNSNSQVIQLRYGEDGLDGVAVDPFGGSLIWSQPKATL 917

Query: 644 ALSHKKFEDKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIF 703
            LS               R LR++F EDV+RELMGS   +SELEKE      W++L+R  
Sbjct: 918 RLSVPSLR--------APRYLRKVFTEDVVRELMGSATAVSELEKE------WERLKR-- 961

Query: 704 NEDVLRELMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                                      DREALR IF +G+S VVLPCNL  +++  Q+
Sbjct: 962 ---------------------------DREALRTIFPTGDSKVVLPCNLQRMLWNAQK 992



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDP+F +PDWML+TVLPVPPL+VRPAVVM GSARNQ+ + + L
Sbjct: 231 EECQILGMDPRFTKPDWMLITVLPVPPLAVRPAVVMFGSARNQDDLTHKL 280



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 44/54 (81%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            VE + + PRQIITPQ+N+PVMGIVQDTLTAVRKMTKRD+FL+K    T + + P
Sbjct: 515  VEQLAMVPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDIFLEKDQMMTILMFLP 568


>gi|31127024|gb|AAF26639.2|AF138989_1 RNA polymerase II largest subunit [Limnadia lenticularis]
          Length = 624

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/452 (74%), Positives = 364/452 (80%), Gaps = 56/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMPQP I+KP+PLWTGKQ+F+LIIPGNVNM RTHSTHPDDED G
Sbjct: 196 KEQMMNLLMFLPTWDGKMPQPAIIKPRPLWTGKQLFTLIIPGNVNMIRTHSTHPDDEDDG 255

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VE+G L+MGILCKK+LG S+ SLLHI F+ELGHEVCGRFYGNIQTVV
Sbjct: 256 PYKWISPGDTKVIVENGELIMGILCKKTLGASAASLLHIIFMELGHEVCGRFYGNIQTVV 315

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 316 NNWLLYEG----------------------------------------------HSIGIG 329

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYL+IQ  IKKAKEDVIEVIQK+HN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 330 DTIADPQTYLDIQATIKKAKEDVIEVIQKSHNDELEPTPGNTLRQTFENQVNRILNDARD 389

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 390 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 449

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 450 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 509

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQ RYGEDGL GE+VE Q   T+ LS+K FE K++FDPSNER  
Sbjct: 510 VMVHYDGTVRNSVGQLIQFRYGEDGLAGESVEFQSQPTIKLSNKAFEKKFKFDPSNER-- 567

Query: 492 LRNVSSLRRVVN---SKPLLIGCWKLTSVEKE 520
                 +RR+ N   +K L      LT +E+E
Sbjct: 568 -----YVRRIFNEEVAKELSSSGEVLTEIERE 594



 Score =  181 bits (460), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 109/161 (67%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQ RYGEDGL GE+VE Q   T+ LS+K FE
Sbjct: 497 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQFRYGEDGLAGESVEFQSQPTIKLSNKAFE 556

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDPSNER +RRIFNE+V +EL  SG+V++E+E                        
Sbjct: 557 KKFKFDPSNERYVRRIFNEEVAKELSSSGEVLTEIE------------------------ 592

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                      +EWE+LC+DREALR IF +GE+ VVLPCNL
Sbjct: 593 -----------REWEQLCKDREALRTIFPTGENKVVLPCNL 622



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 421  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 480

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 481  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 522



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 41/43 (95%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +ENIHVTPRQIITPQ N+PVMGIVQDTL AVRKMTKRDVFL+K
Sbjct: 154  IENIHVTPRQIITPQANKPVMGIVQDTLCAVRKMTKRDVFLEK 196


>gi|31127040|gb|AAF26661.2|AF139011_1 RNA polymerase II largest subunit [Tomocerus sp. jcrjws1]
          Length = 543

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/453 (74%), Positives = 367/453 (81%), Gaps = 56/453 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++EQMMN+LM LPIWDGKMPQP I KPKPLWTGKQ+F+LIIPGNVN+ RTH+THPDDED 
Sbjct: 16  DKEQMMNLLMHLPIWDGKMPQPTIYKPKPLWTGKQLFTLIIPGNVNLIRTHATHPDDEDD 75

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC +ELGHEV GRFYGNIQTV
Sbjct: 76  GPYKWISPGDTKVMVEHGQLIMGILCKKTLGTSAGSLLHICMVELGHEVAGRFYGNIQTV 135

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNNWLL EG                                              HSIGI
Sbjct: 136 VNNWLLYEG----------------------------------------------HSIGI 149

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADP TYLEIQ  IKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 150 GDTIADPSTYLEIQKTIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 209

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 210 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 269

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 270 FIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 329

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVM+HYD TVRNSVGQLIQLRYGEDGL G  VE Q + TV LS++ FE K++FDP+NER 
Sbjct: 330 SVMIHYDGTVRNSVGQLIQLRYGEDGLDGVQVEFQSLPTVKLSNRSFESKFKFDPTNER- 388

Query: 491 TLRNVSSLRRVVNSKPL--LIGCWK-LTSVEKE 520
                  LRRV     +  ++G  + ++++EKE
Sbjct: 389 ------YLRRVFTEDVMRDIMGSGEVISAIEKE 415



 Score =  180 bits (456), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 113/170 (66%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVM+HYD TVRNSVGQLIQLRYGEDGL G  VE Q + TV LS++ FE
Sbjct: 318 GYIQRRLIKAMESVMIHYDGTVRNSVGQLIQLRYGEDGLDGVQVEFQSLPTVKLSNRSFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRR+F EDV+R++MGSG+VIS +EK                       
Sbjct: 378 SKFKFDPTNERYLRRVFTEDVMRDIMGSGEVISAIEK----------------------- 414

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EWE L +DR  LR+IF +GE+ VVLPCNL  +I+ +Q+
Sbjct: 415 ------------EWEALQKDRAVLRQIFPTGENKVVLPCNLQRMIWNVQK 452



 Score =  171 bits (432), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  I+YD   +N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMIHYDGTVRNSV 343



 Score =  108 bits (269), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/59 (84%), Positives = 54/59 (91%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V GED+LSKQAN NATLLFQCLVRSTLCTK VAE +RLSSEAFEWL+GE+E RFQQAQV
Sbjct: 483  VVGEDRLSKQANANATLLFQCLVRSTLCTKRVAEEFRLSSEAFEWLIGEVETRFQQAQV 541


>gi|38232339|gb|AAR15005.1| RNA polymerase II largest subunit [Orchesella imitari]
          Length = 445

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/453 (74%), Positives = 369/453 (81%), Gaps = 56/453 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++EQMMN+LMFLPIWDGKMPQP I KP PLWTGKQ+F+LIIPGNVN  R HSTHPDDED 
Sbjct: 16  DKEQMMNLLMFLPIWDGKMPQPAIHKPIPLWTGKQLFTLIIPGNVNCIREHSTHPDDEDD 75

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC +ELGHEV GRFYGNIQTV
Sbjct: 76  GPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICVVELGHEVAGRFYGNIQTV 135

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNNWLL EG                                              HSIGI
Sbjct: 136 VNNWLLYEG----------------------------------------------HSIGI 149

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADP+TY EIQ  I+KAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 150 GDTIADPETYKEIQKTIRKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 209

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 210 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 269

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 270 FIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 329

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD T+RNSVGQLIQLRYGEDGL GE VE Q + TV LS++ FE+K++FDP+NER 
Sbjct: 330 SVMVHYDGTIRNSVGQLIQLRYGEDGLAGEHVEFQTLPTVKLSNRAFENKFKFDPTNER- 388

Query: 491 TLRNVSSLRRVVNSKPL--LIGCWK-LTSVEKE 520
                  LRRV + + +  ++G  + ++++EKE
Sbjct: 389 ------HLRRVFDEEVMKDIMGSGEVISAIEKE 415



 Score =  177 bits (450), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 89/161 (55%), Positives = 111/161 (68%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD T+RNSVGQLIQLRYGEDGL GE VE Q + TV LS++ FE
Sbjct: 318 GYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAGEHVEFQTLPTVKLSNRAFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           +K++FDP+NER LRR+F+E+V++++MGSG+VIS +EKE                      
Sbjct: 378 NKFKFDPTNERHLRRVFDEEVMKDIMGSGEVISAIEKE---------------------- 415

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                        W+ L  DREALR+IF +G++ VVLPCNL
Sbjct: 416 -------------WDLLQRDREALRQIFPAGDNKVVLPCNL 443



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSV 343


>gi|31127054|gb|AAC03142.2| RNA polymerase II largest subunit [Triops longicaudatus]
          Length = 543

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/426 (77%), Positives = 353/426 (82%), Gaps = 47/426 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMM +LMFLP WDGK+PQP ILKPKPLWTGKQ+F+LIIPGNVNM RTH+THPDDEDSG
Sbjct: 17  KDQMMTLLMFLPTWDGKVPQPAILKPKPLWTGKQLFTLIIPGNVNMIRTHATHPDDEDSG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LG S+GSLLHI FLELGHE+CG+FYGNIQTVV
Sbjct: 77  PYKWISPGDTKVMVEHGDLIMGILCKKTLGASAGSLLHIIFLELGHEICGQFYGNIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 137 NNWLLLEG----------------------------------------------HSIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY +IQ  I+KAKEDVIEVIQKAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 151 DTIADPQTYYDIQETIRKAKEDVIEVIQKAHNDELEPTPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV+YD TVRNSVGQLIQLRYGEDGL  E VE Q + T+ LS+  F  K+RFDPSNER  
Sbjct: 331 VMVNYDGTVRNSVGQLIQLRYGEDGLSAEMVEFQSLPTIKLSNSAFLKKFRFDPSNER-Y 389

Query: 492 LRNVSS 497
           LR + S
Sbjct: 390 LRRIFS 395



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 113/170 (66%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGL  E VE Q + T+ LS+  F 
Sbjct: 318 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLSAEMVEFQSLPTIKLSNSAFL 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDPSNER LRRIF+EDV R+LM SG+VISEL+ E      W+QL R          
Sbjct: 378 KKFRFDPSNERYLRRIFSEDVTRDLMTSGEVISELDAE------WEQLSR---------- 421

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DR+ALR+IF +GE+ VVLPCNL  +I+ +Q+
Sbjct: 422 -------------------DRDALRQIFPTGENKVVLPCNLQRMIWNVQK 452



 Score =  169 bits (429), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 343



 Score =  107 bits (267), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 51/59 (86%), Positives = 53/59 (89%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V GED+LSKQAN NATLLFQCLVRSTLCTK VAE YRLSSEAFEWL+GEIE RFQQAQ 
Sbjct: 483  VKGEDKLSKQANMNATLLFQCLVRSTLCTKRVAEEYRLSSEAFEWLIGEIETRFQQAQA 541


>gi|38232303|gb|AAR14987.1| RNA polymerase II largest subunit [Lynceus sp. JCR-2003]
          Length = 445

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/451 (74%), Positives = 362/451 (80%), Gaps = 54/451 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMM +LMFLP WDGKMPQP ILKP+P WTGKQ+F+LIIPG+VN+ RTHSTHPD+ED+G
Sbjct: 17  KEQMMTLLMFLPTWDGKMPQPAILKPRPQWTGKQLFTLIIPGHVNLIRTHSTHPDEEDAG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VE+G L+MGILCKK+LG S+GSLLHI F+ELGH+ CG FYGNIQTVV
Sbjct: 77  PYKWISPGDTKVMVENGELIMGILCKKTLGASAGSLLHIIFMELGHQQCGLFYGNIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLLLEG                                              HSIGIG
Sbjct: 137 NAWLLLEG----------------------------------------------HSIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYL+IQ  IKKAKEDVIEVIQKAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 151 DTIADPQTYLDIQATIKKAKEDVIEVIQKAHNDELEPTPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS++ FE K++FDPSNER  
Sbjct: 331 VMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQSLPTVKLSNRSFETKFKFDPSNERYV 390

Query: 492 LRNVSS--LRRVVNSKPLLIGCWKLTSVEKE 520
            R  S    R ++ S  +       T +EKE
Sbjct: 391 RRLFSEDVAREIMGSADV------YTEIEKE 415



 Score =  183 bits (464), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/161 (58%), Positives = 111/161 (68%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS++ FE
Sbjct: 318 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQSLPTVKLSNRSFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDPSNER +RR+F+EDV RE+MGS DV +E+EKE      W+QL++          
Sbjct: 378 TKFKFDPSNERYVRRLFSEDVAREIMGSADVYTEIEKE------WEQLKK---------- 421

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                              DR+ LREIF +GE+ VVLPCNL
Sbjct: 422 -------------------DRDCLREIFPTGENKVVLPCNL 443



 Score =  171 bits (432), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 343


>gi|38232273|gb|AAR14972.1| RNA polymerase II largest subunit [Harbansus paucichelatus]
          Length = 445

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/426 (77%), Positives = 354/426 (83%), Gaps = 47/426 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMMN+LM+LP+WDGKMPQP ILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 17  KDQMMNLLMYLPLWDGKMPQPAILKPKPLWTGKQLFSLIIPGNVNMIRTHSTHPDEEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKKSLGTS+GSLLHI ++ELGHE+CG FYGNIQTVV
Sbjct: 77  PYRWISPGDTKVMVEHGDLVMGILCKKSLGTSAGSLLHIVWMELGHEICGLFYGNIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL+EG                                              HSIGIG
Sbjct: 137 NNWLLIEG----------------------------------------------HSIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYL+IQ  IKKAK DVI+VIQKAH  +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 151 DTIADPQTYLDIQNTIKKAKRDVIDVIQKAHLDELEPTPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           I DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 ITDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGL GE VE Q I T+  S+K F+ K++FDP+NER  
Sbjct: 331 VMVHYDGTVRNSVGQLIQLRYGEDGLAGEFVEFQSIPTIKPSNKVFQKKFKFDPTNER-Y 389

Query: 492 LRNVSS 497
           LR V S
Sbjct: 390 LRRVFS 395



 Score =  181 bits (460), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 91/161 (56%), Positives = 111/161 (68%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGL GE VE Q I T+  S+K F+
Sbjct: 318 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGEFVEFQSIPTIKPSNKVFQ 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRR+F+EDV++E+MGSGD I+E+EKE                      
Sbjct: 378 KKFKFDPTNERYLRRVFSEDVVKEVMGSGDAIAEIEKE---------------------- 415

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                        WE+L +DRE+LR++F +G+S VVLPCNL
Sbjct: 416 -------------WEQLMKDRESLRQVFPTGDSKVVLPCNL 443



 Score =  167 bits (424), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFI DDYGPESRGFVENSYLAGLTP+EFFFHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFITDDYGPESRGFVENSYLAGLTPTEFFFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 343


>gi|31127030|gb|AAF26646.2|AF138996_1 RNA polymerase II largest subunit [Nebalia hessleri]
          Length = 624

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/434 (74%), Positives = 356/434 (82%), Gaps = 48/434 (11%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
            +MMN LMFLPIWDGKMPQP ILKPKPLWTGKQ+F++IIPGN+NM +THSTHPDDED GP
Sbjct: 197 HEMMNCLMFLPIWDGKMPQPAILKPKPLWTGKQLFTMIIPGNLNMVKTHSTHPDDEDDGP 256

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
           Y+WISPGDTKV+VEHG L+MGI+CKKSLG SSGSLLHIC++ELGH++ GRFYGNIQTVVN
Sbjct: 257 YKWISPGDTKVLVEHGDLVMGIICKKSLGASSGSLLHICWMELGHDIAGRFYGNIQTVVN 316

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
           NWLLLEG                                              HSIGIGD
Sbjct: 317 NWLLLEG----------------------------------------------HSIGIGD 330

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TI+DP TY +I   I+KAKEDV+EVI KAHN DLE TPGNTLRQTFENQVNRILNDARDK
Sbjct: 331 TISDPNTYRDITDTIRKAKEDVMEVIHKAHNDDLEATPGNTLRQTFENQVNRILNDARDK 390

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
           TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI
Sbjct: 391 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 450

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV
Sbjct: 451 KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 510

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MV+YD TVRNSVGQ+IQLRYGEDGL GE VE Q++ TV +S+++FEDKYRFDP+NER   
Sbjct: 511 MVNYDGTVRNSVGQVIQLRYGEDGLAGEFVEFQKMPTVKMSNRRFEDKYRFDPTNERYLR 570

Query: 493 R--NVSSLRRVVNS 504
           R  N   +R ++ S
Sbjct: 571 RLFNEEVVREIIGS 584



 Score =  177 bits (450), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 90/161 (55%), Positives = 111/161 (68%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQ+IQLRYGEDGL GE VE Q++ TV +S+++FE
Sbjct: 497 GYIQRRLIKAMESVMVNYDGTVRNSVGQVIQLRYGEDGLAGEFVEFQKMPTVKMSNRRFE 556

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           DKYRFDP+NER LRR+FNE+V+RE++GSGD IS                           
Sbjct: 557 DKYRFDPTNERYLRRLFNEEVVREIIGSGDAIS--------------------------- 589

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                    LE+E+++L EDR+ LR IF  G++ VVLPCNL
Sbjct: 590 --------MLEQEYQQLSEDRKTLRTIFPKGDTKVVLPCNL 622



 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 421  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 480

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 481  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 522



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 41/42 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 1530
            +EN+HVTPR IITPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 154  IENMHVTPRMIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLE 195


>gi|520503|gb|AAC83397.1| RNA polymerase II, largest subunit, partial [Artemia salina]
          Length = 1341

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/458 (71%), Positives = 360/458 (78%), Gaps = 56/458 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMM +LM+LP WDGK+PQP ILKPKPLWTGKQ+F+LIIPG VNM +THSTHPDDED G
Sbjct: 469 KEQMMTLLMYLPTWDGKLPQPAILKPKPLWTGKQLFTLIIPGKVNMMKTHSTHPDDEDDG 528

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LG S+GS+LHI FLELGH++CG+FYGNIQTVV
Sbjct: 529 PYKWISPGDTKVMVEHGELIMGILCKKTLGASAGSILHIIFLELGHDICGKFYGNIQTVV 588

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 589 NNWLLYEG----------------------------------------------HSIGIG 602

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY  IQ  IKKAKEDVI+VI KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 603 DTIADPQTYNSIQTTIKKAKEDVIDVITKAHNNELEPTPGNTLRQTFENQVNRILNDARD 662

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAK SLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 663 KTGGSAKNSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 722

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME+
Sbjct: 723 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMEA 782

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
            MV YD TVRNSVGQ+IQLRYGEDGL GE VE Q + T+ LS++ FE KYRFDPSNER  
Sbjct: 783 CMVAYDGTVRNSVGQVIQLRYGEDGLAGELVEFQSLPTIKLSNRAFESKYRFDPSNER-- 840

Query: 492 LRNVSSLRRVVN---SKPLLIGCWKLTSVEKEMNTVLQ 526
                 LR+      +K LL     +T +EKE   +++
Sbjct: 841 -----QLRKTFTEDVTKSLLGDSEVITEIEKEWEALVK 873



 Score =  564 bits (1453), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 291/415 (70%), Positives = 326/415 (78%), Gaps = 21/415 (5%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V GED+LSKQANENATLLFQCLVRSTLCTK +A+ YRL++EAFEWL+GEIE RFQ AQ +
Sbjct: 935  VNGEDKLSKQANENATLLFQCLVRSTLCTKRLADEYRLNTEAFEWLIGEIETRFQLAQAV 994

Query: 1013 --ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-----VENSYLAGLTPSEFFF 1065
                VG    +    P         HF        + G      + N   +   PS   F
Sbjct: 995  PGEMVGAIAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINVSRSPKAPSLTVF 1054

Query: 1066 HAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L  TA + AE    ++       L +VTANTAIYYDPD +NTVI EDQ+FV 
Sbjct: 1055 --------LTGTAARDAEKAKQVLCRLEHTTLKKVTANTAIYYDPDIKNTVIAEDQDFVT 1106

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            +YY+MPD D +R+SPWLLRIELDRKRMTDKKLTME ISEKI AGFG+DLNCIFNDDNAEK
Sbjct: 1107 LYYDMPDVDTSRMSPWLLRIELDRKRMTDKKLTMEQISEKITAGFGEDLNCIFNDDNAEK 1166

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSD+SK  +E++ +DKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQT
Sbjct: 1167 LVLRIRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQT 1226

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            D+KKRIIIT++GEF+AIA+WLLETDGTSLMKVLSERDVDPVRT+SNDICEIF VLGIEAV
Sbjct: 1227 DNKKRIIITDTGEFRAIAEWLLETDGTSLMKVLSERDVDPVRTYSNDICEIFTVLGIEAV 1286

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1354
            RKS+EKEMN VLQFYGLYVNYRHLALLCDVMTAKG+LMAITRHGINRQDTGALMR
Sbjct: 1287 RKSIEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGYLMAITRHGINRQDTGALMR 1341



 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 101/152 (66%), Positives = 113/152 (74%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPD +NTVI EDQ+FV +YY+MPD D +R+SPWLLRIELDRKRMTDKK
Sbjct: 1078 LKKVTANTAIYYDPDIKNTVIAEDQDFVTLYYDMPDVDTSRMSPWLLRIELDRKRMTDKK 1137

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME ISEKI AGF                            G+DLNCIFNDDNAEKLVL
Sbjct: 1138 LTMEQISEKITAGF----------------------------GEDLNCIFNDDNAEKLVL 1169

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD+SK  +E++ +DKMEDDMFLRCIE
Sbjct: 1170 RIRIMNSDESKFGEEDEQIDKMEDDMFLRCIE 1201



 Score =  177 bits (449), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 91/170 (53%), Positives = 110/170 (64%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAME+ MV YD TVRNSVGQ+IQLRYGEDGL GE VE Q + T+ LS++ FE
Sbjct: 770 GYIQRRLIKAMEACMVAYDGTVRNSVGQVIQLRYGEDGLAGELVEFQSLPTIKLSNRAFE 829

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KYRFDPSNERQLR+ F EDV + L+G  +VI+E+E                        
Sbjct: 830 SKYRFDPSNERQLRKTFTEDVTKSLLGDSEVITEIE------------------------ 865

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      KEWE L +DREALR++F SGE+ VVLPCNL  +I+  Q+
Sbjct: 866 -----------KEWEALVKDREALRKVFPSGENKVVLPCNLQRMIWNAQK 904



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 86/102 (84%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 694  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 753

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +      + YD   +N+V
Sbjct: 754  GGREGLIDTAVKTAETGYIQRRLIKAMEACMVAYDGTVRNSV 795



 Score =  119 bits (299), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/68 (83%), Positives = 62/68 (91%), Gaps = 3/68 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKS+EKEMN VLQFYGLYVNYRHLALLCDVMTAKG+LMAITRHGINR
Sbjct: 1274 ICEIFTVLGIEAVRKSIEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGYLMAITRHGINR 1333

Query: 830  QDTGALMR 837
            QDTGALMR
Sbjct: 1334 QDTGALMR 1341



 Score =  110 bits (275), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 50/53 (94%), Positives = 52/53 (98%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 568
            S+EKEMN VLQFYGLYVNYRHLALLCDVMTAKG+LMAITRHGINRQDTGALMR
Sbjct: 1289 SIEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGYLMAITRHGINRQDTGALMR 1341



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/54 (75%), Positives = 45/54 (83%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            +ENIH+TPRQIITPQ NRPVMGIVQDTL AVRKMTKRDVFL+K    T + Y P
Sbjct: 427  LENIHITPRQIITPQANRPVMGIVQDTLCAVRKMTKRDVFLEKEQMMTLLMYLP 480



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 39/46 (84%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
           EE  ILGMDPKFARPDWM++TV+PVPPL+VRP V+M GSA+  + +
Sbjct: 143 EECHILGMDPKFARPDWMILTVIPVPPLNVRPTVIMFGSAKGHDDL 188


>gi|38232235|gb|AAR14953.1| RNA polymerase II largest subunit [Artemia salina]
          Length = 445

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/458 (71%), Positives = 360/458 (78%), Gaps = 56/458 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMM +LM+LP WDGK+PQP ILKPKPLWTGKQ+F+LIIPG VNM +THSTHPDDED G
Sbjct: 17  KEQMMTLLMYLPTWDGKLPQPAILKPKPLWTGKQLFTLIIPGKVNMMKTHSTHPDDEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LG S+GS+LHI FLELGH++CG+FYGNIQTVV
Sbjct: 77  PYKWISPGDTKVMVEHGELIMGILCKKTLGASAGSILHIIFLELGHDICGKFYGNIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 137 NNWLLYEG----------------------------------------------HSIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY  IQ  IKKAKEDVI+VI KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 151 DTIADPQTYNSIQTTIKKAKEDVIDVITKAHNNELEPTPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAK SLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGGSAKNSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME+
Sbjct: 271 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMEA 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
            MV YD TVRNSVGQ+IQLRYGEDGL GE VE Q + T+ LS++ FE KYRFDPSNER  
Sbjct: 331 CMVAYDGTVRNSVGQVIQLRYGEDGLAGELVEFQSLPTIKLSNRAFESKYRFDPSNER-- 388

Query: 492 LRNVSSLRRVVN---SKPLLIGCWKLTSVEKEMNTVLQ 526
                 LR+      +K LL     +T +EKE   +++
Sbjct: 389 -----QLRKTFTEDVTKSLLGDSEVITEIEKEWEALVK 421



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 89/161 (55%), Positives = 105/161 (65%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAME+ MV YD TVRNSVGQ+IQLRYGEDGL GE VE Q + T+ LS++ FE
Sbjct: 318 GYIQRRLIKAMEACMVAYDGTVRNSVGQVIQLRYGEDGLAGELVEFQSLPTIKLSNRAFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KYRFDPSNERQLR+ F EDV + L+G  +VI+E+E                        
Sbjct: 378 SKYRFDPSNERQLRKTFTEDVTKSLLGDSEVITEIE------------------------ 413

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                      KEWE L +DREALR++F SGE+ VVLPCNL
Sbjct: 414 -----------KEWEALVKDREALRKVFPSGENKVVLPCNL 443



 Score =  167 bits (424), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 86/102 (84%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +      + YD   +N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMEACMVAYDGTVRNSV 343


>gi|38232229|gb|AAR14950.1| RNA polymerase II largest subunit [Argulus sp. Arg2]
          Length = 445

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/424 (76%), Positives = 353/424 (83%), Gaps = 47/424 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++++MN+LM+LP W+GK+P PCILKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPDDED G
Sbjct: 17  KDEIMNLLMYLPRWNGKVPLPCILKPKPLWTGKQLFSLIIPGNVNLIRTHSTHPDDEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHI +LELGHEVCG FYGNIQTVV
Sbjct: 77  PYKWISPGDTKVLVEHGELIMGILCKKTLGTSAGSLLHITWLELGHEVCGEFYGNIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL+EG                                              HSIGIG
Sbjct: 137 NNWLLIEG----------------------------------------------HSIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTYL+IQ  IKKAKEDVIEVIQKAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 151 DTIADPQTYLDIQNTIKKAKEDVIEVIQKAHNDELEPTPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLK+MVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGGSAKKSLTEYNNLKSMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV+YD TVRNSVGQLIQLRYGEDGL  E +E Q + TV  S+K FE K++FD +NER  
Sbjct: 331 VMVNYDGTVRNSVGQLIQLRYGEDGLAAEWLEFQTLPTVKPSNKSFEKKFKFDATNER-Y 389

Query: 492 LRNV 495
           LR V
Sbjct: 390 LRKV 393



 Score =  172 bits (436), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/161 (55%), Positives = 107/161 (66%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGL  E +E Q + TV  S+K FE
Sbjct: 318 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLAAEWLEFQTLPTVKPSNKSFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD +NER LR++F ED+++E+MGSG+VISELEK                       
Sbjct: 378 KKFKFDATNERYLRKVFTEDIVKEIMGSGEVISELEK----------------------- 414

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                       EWE+L  DR ALR+IF +GE+ VVLPCNL
Sbjct: 415 ------------EWEQLFSDRNALRQIFPTGENKVVLPCNL 443



 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 343


>gi|38232323|gb|AAR14997.1| RNA polymerase II largest subunit [Neogonodactylus oerstedii]
          Length = 624

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/418 (75%), Positives = 347/418 (83%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           + +MM +LMFLPIWDG+MPQP ILKPKP WTGKQ+FSLIIPGN+N+ +THSTHPDDED G
Sbjct: 196 KHEMMTLLMFLPIWDGRMPQPAILKPKPYWTGKQIFSLIIPGNLNLIKTHSTHPDDEDDG 255

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LG+SSGSLLH+ ++ELGHE+ GRFYGNIQTV+
Sbjct: 256 PYRWISPGDTKVLVEHGELIMGILCKKTLGSSSGSLLHVAWMELGHEIAGRFYGNIQTVI 315

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 316 NNWLLLEG----------------------------------------------HSIGIG 329

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTI+DP TY  IQ  I KAKEDVIEVI KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 330 DTISDPSTYGVIQATIHKAKEDVIEVIHKAHNDELEPTPGNTLRQTFENQVNRILNDARD 389

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 390 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 449

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 450 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 509

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSV Q+IQLRYGEDGL GE VE Q++ TV LS ++FE+KY+FDP+NER
Sbjct: 510 VMVNYDGTVRNSVSQVIQLRYGEDGLAGEFVEFQKMPTVKLSKRRFEEKYKFDPTNER 567



 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 421  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 480

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 481  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 522



 Score =  150 bits (379), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/161 (51%), Positives = 106/161 (65%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSV Q+IQLRYGEDGL GE VE Q++ TV LS ++FE
Sbjct: 497 GYIQRRLIKAMESVMVNYDGTVRNSVSQVIQLRYGEDGLAGEFVEFQKMPTVKLSKRRFE 556

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           +KY+FDP+NER LR+++NEDV++EL+GS   I+ LE+E                      
Sbjct: 557 EKYKFDPTNERYLRKLYNEDVVKELIGSSHAINTLEQEWQ-------------------- 596

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                          +L +DREALR +F  G+++VV PCNL
Sbjct: 597 ---------------QLQQDREALRLVFPKGDTSVVQPCNL 622



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 45/54 (83%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            +EN+HVTPR IITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K    T + + P
Sbjct: 154  IENLHVTPRMIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKHEMMTLLMFLP 207


>gi|405965007|gb|EKC30438.1| DNA-directed RNA polymerase II subunit RPB1 [Crassostrea gigas]
          Length = 3055

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/507 (66%), Positives = 386/507 (76%), Gaps = 42/507 (8%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            VAG D+LS QAN NATLLF+CL+RSTLC K V E +RLSSEAFEWL+GE+E+RFQQAQ  
Sbjct: 1016 VAGGDRLSIQANANATLLFKCLIRSTLCAKRVTEEFRLSSEAFEWLIGEVESRFQQAQAH 1075

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 1076 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINISKKPKTPSLT 1133

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
               YL G         A    E   D   +   T      L +VTANTAIYYDPDPQNTV
Sbjct: 1134 --VYLIG--------QAARDAEKAKDVLCRLEHTT-----LRKVTANTAIYYDPDPQNTV 1178

Query: 1111 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNC 1170
            I EDQE+VNVYYEMPDFD ++IS WLLRIELDRKRMTDKKLTME ISEKI AGFGDDLNC
Sbjct: 1179 ISEDQEWVNVYYEMPDFDVSKISAWLLRIELDRKRMTDKKLTMEQISEKITAGFGDDLNC 1238

Query: 1171 IFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIG 1230
            IFNDDNAEKLVLRIRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQGIEAI 
Sbjct: 1239 IFNDDNAEKLVLRIRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIA 1298

Query: 1231 KVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEI 1290
            KVYMHLP T+ KKRI ITE GEFKA+A+W+LETDGT+LMKVLS+RDVDP+RT +NDI E+
Sbjct: 1299 KVYMHLPNTEDKKRISITEEGEFKAVAEWILETDGTALMKVLSQRDVDPIRTTTNDIVEV 1358

Query: 1291 FQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTG 1350
            F +LGIEAVRKS+EKEMN V+ F G YVNYRHL+LLCD MTAKGHLMAITRHGINRQ+TG
Sbjct: 1359 FSILGIEAVRKSIEKEMNHVISFDGSYVNYRHLSLLCDSMTAKGHLMAITRHGINRQETG 1418

Query: 1351 ALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIE 1410
            AL RCSFEETVD+LM+AA+H E DPM+GVSE II+GQL R+GTGCFDLLLDAEKCK G+E
Sbjct: 1419 ALARCSFEETVDILMEAASHGEMDPMKGVSECIIVGQLARIGTGCFDLLLDAEKCKYGME 1478

Query: 1411 IPLA--TGMMGG-PAGMFFGSAATPSS 1434
            IP A   GM GG   G+FFG+ A+P++
Sbjct: 1479 IPTAIGAGMPGGIGTGLFFGAGASPAA 1505



 Score =  606 bits (1563), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 293/416 (70%), Positives = 325/416 (78%), Gaps = 46/416 (11%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           Q+MN+LMFLP WDG +PQP ILKPKPLWTGKQ+FSL+IPG  N  RTHSTHPD+ED GPY
Sbjct: 552 QVMNLLMFLPRWDGHVPQPAILKPKPLWTGKQLFSLVIPGRTNCIRTHSTHPDEEDKGPY 611

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           +WISPGDTKV++E G L+ GILCKK+LGTSSGSL H+ F+E G  + G  YG+IQT+VNN
Sbjct: 612 KWISPGDTKVLIEDGMLISGILCKKTLGTSSGSLAHVVFMEYGWVIAGEMYGHIQTLVNN 671

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLLLEG                                              HSIGIGDT
Sbjct: 672 WLLLEG----------------------------------------------HSIGIGDT 685

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IADPQTY++IQ  IKKAK DVIEVI+KAHN DLEPTPGNTLRQTFEN VNRILNDARDKT
Sbjct: 686 IADPQTYIDIQDTIKKAKHDVIEVIEKAHNDDLEPTPGNTLRQTFENMVNRILNDARDKT 745

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G  A+KSL++YNN KAMVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHFIK
Sbjct: 746 GSKAQKSLSDYNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIK 805

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM
Sbjct: 806 DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 865

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           V YD TVRN V QL+QLRYGEDGL    VE Q + T+  S++ FE +++FD +NER
Sbjct: 866 VKYDGTVRNQVEQLVQLRYGEDGLDATHVEFQTMPTLKPSNRAFERQFKFDATNER 921



 Score =  267 bits (683), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 159/317 (50%), Positives = 205/317 (64%), Gaps = 26/317 (8%)

Query: 667  IFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISE 720
            IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  I  
Sbjct: 1239 IFNDDNAEKLVLRIRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQG--IEA 1296

Query: 721  LEKEWEKL--CEDREALREIFSSGESNVV----LPCNLMEVIFILQRWKL----WGNENL 770
            + K +  L   ED++ +  I   GE   V    L  +   ++ +L +  +        ++
Sbjct: 1297 IAKVYMHLPNTEDKKRI-SITEEGEFKAVAEWILETDGTALMKVLSQRDVDPIRTTTNDI 1355

Query: 771  RFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 830
              +  I+ + +VRKS+EKEMN V+ F G YVNYRHL+LLCD MTAKGHLMAITRHGINRQ
Sbjct: 1356 VEVFSILGIEAVRKSIEKEMNHVISFDGSYVNYRHLSLLCDSMTAKGHLMAITRHGINRQ 1415

Query: 831  DTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 890
            +TGAL RCSFEETVD+LM+AA+H E DPM+GVSE II+GQL R+GTGCFDLLLDAEKCK 
Sbjct: 1416 ETGALARCSFEETVDILMEAASHGEMDPMKGVSECIIVGQLARIGTGCFDLLLDAEKCKY 1475

Query: 891  GIEIPLA--TGMMGG-PAGMFFGSAATPSS-MSPQMTPWAQ-STPAYNALMSP--GAAMT 943
            G+EIP A   GM GG   G+FFG+ A+P++ MSPQMTPW Q +TPAY +  SP  G+ MT
Sbjct: 1476 GMEIPTAIGAGMPGGIGTGLFFGAGASPAAGMSPQMTPWQQGATPAYASAWSPGVGSGMT 1535

Query: 944  PGGPGFSPSVAGEDQLS 960
            PG  GFSPS A E   S
Sbjct: 1536 PGAAGFSPSAASESGYS 1552



 Score =  217 bits (552), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 110/152 (72%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQE+VNVYYEMPDFD ++IS WLLRIELDRKRMTDKK
Sbjct: 1159 LRKVTANTAIYYDPDPQNTVISEDQEWVNVYYEMPDFDVSKISAWLLRIELDRKRMTDKK 1218

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME ISEKI AGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1219 LTMEQISEKITAGFG----------------------------DDLNCIFNDDNAEKLVL 1250

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIE
Sbjct: 1251 RIRIMNSDESKMQNEEEIVDKMEDDVFLRCIE 1282



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/162 (53%), Positives = 107/162 (66%), Gaps = 4/162 (2%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 764  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAG 823

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEF 1117
            LTPSEF+FHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N V    ++ 
Sbjct: 824  LTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQV----EQL 879

Query: 1118 VNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEK 1159
            V + Y     D T +    +       R  +++   +A +E+
Sbjct: 880  VQLRYGEDGLDATHVEFQTMPTLKPSNRAFERQFKFDATNER 921



 Score =  144 bits (363), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 122/222 (54%), Gaps = 49/222 (22%)

Query: 592  GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
            GYIQRRLIKAMESVMV YD TVRN V QL+QLRYGEDGL    VE Q + T+  S++ FE
Sbjct: 851  GYIQRRLIKAMESVMVKYDGTVRNQVEQLVQLRYGEDGLDATHVEFQTMPTLKPSNRAFE 910

Query: 652  DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +++FD +NER +++  +E+V+++LMG    +S+L++E      W+QLR           
Sbjct: 911  RQFKFDATNERNMKKCLSEEVIKDLMGDALAVSQLDRE------WEQLR----------- 953

Query: 712  MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR---------- 761
                              EDR+ LR IF +G+S VVLPCNL  +I+  Q+          
Sbjct: 954  ------------------EDRDILRSIFPTGDSKVVLPCNLQRMIWNAQKIFRIDTHKPT 995

Query: 762  --WKLWGNENLRFLCKIIFVLSV--RKSVEKEMNTVLQFYGL 799
                +   E +  LCK + V++   R S++   N  L F  L
Sbjct: 996  DLHPIKVVEGVEDLCKRLIVVAGGDRLSIQANANATLLFKCL 1037



 Score =  137 bits (346), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 69/77 (89%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            S+EKEMN V+ F G YVNYRHL+LLCD MTAKGHLMAITRHGINRQ+TGAL RCSFEETV
Sbjct: 1370 SIEKEMNHVISFDGSYVNYRHLSLLCDSMTAKGHLMAITRHGINRQETGALARCSFEETV 1429

Query: 576  DVLMDAAAHAEADPMRG 592
            D+LM+AA+H E DPM+G
Sbjct: 1430 DILMEAASHGEMDPMKG 1446



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           +E  +LGMD +++RPDWM+VTV+PVPPL+VRPAVVM GSARNQ+ + + L
Sbjct: 224 DECQVLGMDHRYSRPDWMIVTVMPVPPLAVRPAVVMFGSARNQDDLTHKL 273



 Score = 74.7 bits (182), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            + N+ + PR IITPQ NRPVMGIVQDTLTAVRKMTKRDVFLD+
Sbjct: 508  ISNLALVPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLDR 550


>gi|391335740|ref|XP_003742247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Metaseiulus occidentalis]
          Length = 1842

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/508 (66%), Positives = 385/508 (75%), Gaps = 48/508 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V GED LS QANENATLLF+ L+RSTLC++ V + +RLS+EAF+WL+GEIE RF Q+Q  
Sbjct: 1016 VPGEDHLSIQANENATLLFRALLRSTLCSRRVGQEFRLSTEAFDWLLGEIEARFHQSQGH 1075

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1076 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINISKQPK----- 1128

Query: 1051 ENSYLAGLTPS-EFFFHAMGGR--EGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQ 1107
                    TPS   F      R  E   D   +   T      L +VTANTAIYYDPDPQ
Sbjct: 1129 --------TPSLTVFLKGASARDAEKAKDVLCRLEHTT-----LRKVTANTAIYYDPDPQ 1175

Query: 1108 NTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
            NTVI EDQ+FVNVYYEMPDFDPT+ISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDD
Sbjct: 1176 NTVIAEDQDFVNVYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDD 1235

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGI 1226
            LNCIFNDDNA+KLVLRIRIMN+D  K  D  E+  DKMEDD+FLRCIE+NMLSDMTLQGI
Sbjct: 1236 LNCIFNDDNADKLVLRIRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295

Query: 1227 EAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSND 1286
            EAI KVYMHLP TD KKRI++TE+GEFKAI++WLLETDGTSLM+VLSERDVDPVRT+SND
Sbjct: 1296 EAISKVYMHLPTTDDKKRIVVTETGEFKAISEWLLETDGTSLMRVLSERDVDPVRTYSND 1355

Query: 1287 ICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1346
            I E+F VLGIEAVRK+VEKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1356 IIEVFSVLGIEAVRKAVEKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 1415

Query: 1347 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1406
            QDTGALMRCSFEETVD+LMDAA HAEAD ++GVSENII+G+L RMGTG FDL+LDAEKCK
Sbjct: 1416 QDTGALMRCSFEETVDILMDAAFHAEADKLKGVSENIILGKLARMGTGAFDLMLDAEKCK 1475

Query: 1407 DGIEIPLAT-GMMGGPA-GMFFGSAATP 1432
             GIE+ +A  GM G P  G+FFGSAATP
Sbjct: 1476 HGIEVSMAIPGMEGLPGQGVFFGSAATP 1503



 Score =  616 bits (1589), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 297/424 (70%), Positives = 340/424 (80%), Gaps = 47/424 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMMN+LMFLPIW+GK+P P ILKPKPLWT KQ+FSLIIPGNVN+ RTHSTHPD+ED G
Sbjct: 550 KDQMMNLLMFLPIWNGKVPIPAILKPKPLWTAKQLFSLIIPGNVNLIRTHSTHPDEEDDG 609

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++EHG LL GI+CKK++G S+GSL+H+ F+E+GH V G FY ++QTVV
Sbjct: 610 PYKWISPGDTKVIIEHGQLLSGIVCKKTVGASAGSLMHVLFVEMGHRVAGAFYSHLQTVV 669

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL EG                                              HSIGIG
Sbjct: 670 NAWLLYEG----------------------------------------------HSIGIG 683

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD QTY++IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 684 DTIADQQTYMDIQNTIKKAKQDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARD 743

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSA+KSL+E+NN K+MVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 744 KTGGSAQKSLSEFNNFKSMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 803

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDD+GPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 804 IKDDFGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 863

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VM+ YD TVRNS GQ+IQ RYGEDGL G  VE Q + T+  S+++FE K+RFD +NE+  
Sbjct: 864 VMICYDGTVRNSNGQVIQFRYGEDGLDGCCVESQYLTTIKPSNRQFEQKFRFDVTNEK-L 922

Query: 492 LRNV 495
           LR V
Sbjct: 923 LRKV 926



 Score =  266 bits (679), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 134/185 (72%), Positives = 151/185 (81%), Gaps = 5/185 (2%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + +VRK+VEKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL
Sbjct: 1362 VLGIEAVRKAVEKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 1421

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
            MRCSFEETVD+LMDAA HAEAD ++GVSENII+G+L RMGTG FDL+LDAEKCK GIE+ 
Sbjct: 1422 MRCSFEETVDILMDAAFHAEADKLKGVSENIILGKLARMGTGAFDLMLDAEKCKHGIEVS 1481

Query: 896  LAT-GMMGGPA-GMFFGSAATP-SSMSPQMTPW-AQSTPAYNALMSPGAAMTPGGPGFSP 951
            +A  GM G P  G+FFGSAATP   MSPQMTPW A  TPAY  + SP + MTPG  GFSP
Sbjct: 1482 MAIPGMEGLPGQGVFFGSAATPMGGMSPQMTPWNAGQTPAY-GMWSPTSNMTPGAAGFSP 1540

Query: 952  SVAGE 956
            S   E
Sbjct: 1541 SAQSE 1545



 Score =  211 bits (538), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 125/189 (66%), Gaps = 36/189 (19%)

Query: 1500 ITPQNNRPVMGIVQDTLTAVRKMTKRDVF-------LDKVTANTAIYYDPDPQNTVIPED 1552
            I+ Q   P + +     +A      +DV        L KVTANTAIYYDPDPQNTVI ED
Sbjct: 1123 ISKQPKTPSLTVFLKGASARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAED 1182

Query: 1553 QEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSP 1612
            Q+FVNVYYEMPDFDPT+ISPWLLRIELDRKRMTDKKLTME I+EKINAGFG         
Sbjct: 1183 QDFVNVYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFG--------- 1233

Query: 1613 TDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQD-EEDAVDKME 1671
                               DDLNCIFNDDNA+KLVLRIRIMN+D  K  D  E+  DKME
Sbjct: 1234 -------------------DDLNCIFNDDNADKLVLRIRIMNNDGDKFTDGAEEQADKME 1274

Query: 1672 DDMFLRCIE 1680
            DD+FLRCIE
Sbjct: 1275 DDVFLRCIE 1283



 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/199 (48%), Positives = 119/199 (59%), Gaps = 18/199 (9%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD+GPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 775  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDFGPESRGFVENSYLAGLTPSEFFFHAM 834

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   +  I YD     TV   + + +   Y     D
Sbjct: 835  GGREGLIDTAVKTAETGYIQRRLIKAMESVMICYD----GTVRNSNGQVIQFRYGEDGLD 890

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN 1188
               +    L       R  ++K   +  +EK+       L  ++ +D        I+ +N
Sbjct: 891  GCCVESQYLTTIKPSNRQFEQKFRFDVTNEKL-------LRKVYTED-------VIKELN 936

Query: 1189 SDDSKMQDEEDAVDKMEDD 1207
            S  S + + E   D ++ D
Sbjct: 937  SSASAVAEMEREWDCLKKD 955



 Score =  147 bits (372), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 104/170 (61%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVM+ YD TVRNS GQ+IQ RYGEDGL G  VE Q + T+  S+++FE
Sbjct: 851 GYIQRRLIKAMESVMICYDGTVRNSNGQVIQFRYGEDGLDGCCVESQYLTTIKPSNRQFE 910

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NE+ LR+++ EDV++EL  S   ++E+E                        
Sbjct: 911 QKFRFDVTNEKLLRKVYTEDVIKELNSSASAVAEME------------------------ 946

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +EW+ L +DRE LR +F +G S+VVLPCNL  +++  Q+
Sbjct: 947 -----------REWDCLKKDREILRNVFPTGSSSVVLPCNLSRMVWNAQK 985



 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/77 (85%), Positives = 71/77 (92%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            +VEKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1371 AVEKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 576  DVLMDAAAHAEADPMRG 592
            D+LMDAA HAEAD ++G
Sbjct: 1431 DILMDAAFHAEADKLKG 1447



 Score = 73.6 bits (179), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 39/43 (90%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +E + + PRQIITPQ N+PVMGIVQDTLTAVRKMTKRDV+L+K
Sbjct: 508  IEQLAMVPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVYLEK 550



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 40/50 (80%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE   LGMD ++A+PDWM++TVL VPPL VRPAVVM GSARNQ+ + + L
Sbjct: 224 EECFCLGMDERYAKPDWMVLTVLAVPPLCVRPAVVMFGSARNQDDLTHKL 273


>gi|38232237|gb|AAR14954.1| RNA polymerase II largest subunit [Armadillidium vulgare]
          Length = 736

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/418 (74%), Positives = 345/418 (82%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           + +MMN+LMFLPIWDG+MP P ILKPKPLWTGKQ+FSLIIPGN+N+ +THS HPDDED G
Sbjct: 17  KHEMMNLLMFLPIWDGRMPHPAILKPKPLWTGKQLFSLIIPGNLNLIKTHSAHPDDEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LG++SGSLLHI ++ELGHE+ GRFYGNIQTVV
Sbjct: 77  PYKWISPGDTKVLVEHGELIMGILCKKTLGSASGSLLHIAWMELGHEIAGRFYGNIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 137 NNWLLLEG----------------------------------------------HSIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTI+D  TY  IQ  IKKAK++V++VI KAHN +LEPTPGNTLRQTFENQVNRILN+ARD
Sbjct: 151 DTISDKDTYRTIQETIKKAKDEVMQVIHKAHNDELEPTPGNTLRQTFENQVNRILNNARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SAK SLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGVSAKTSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRNSV Q+IQLRYGEDGL GE VE Q++ TV LS+++FEDKYRFD +NER
Sbjct: 331 VMVNYDGTVRNSVSQVIQLRYGEDGLAGEYVEFQKMPTVKLSYRRFEDKYRFDVTNER 388



 Score =  265 bits (676), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 150/277 (54%), Positives = 177/277 (63%), Gaps = 51/277 (18%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+GED++S QANENATLLF CLVRSTLCTK V+E YRL++EAF WL+GEIE RF QA   
Sbjct: 483  VSGEDRISVQANENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNWLMGEIETRFNQAIAN 542

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 543  PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPR--LKEIINISKKPKA---- 596

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                     PS   F        L+  A + AE   NVL       L +VT+NTAIYYDP
Sbjct: 597  ---------PSLTVF--------LLGAAARDAEKAKNVLCRLEHTTLRKVTSNTAIYYDP 639

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQNTVI EDQEFVNVYYEMPDFD +RISPWLLRIELDRK+MTDKKLTME IS+KIN+GF
Sbjct: 640  DPQNTVIEEDQEFVNVYYEMPDFDVSRISPWLLRIELDRKKMTDKKLTMEQISQKINSGF 699

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAV 1201
            GDDLNCIFNDDNAEKLVLRIRI+  DD    + E+ V
Sbjct: 700  GDDLNCIFNDDNAEKLVLRIRIIVGDDKLADEAEEQV 736



 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/139 (65%), Positives = 99/139 (71%), Gaps = 28/139 (20%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT+NTAIYYDPDPQNTVI EDQEFVNVYYEMPDFD +RISPWLLRIELDRK+MTDKK
Sbjct: 626  LRKVTSNTAIYYDPDPQNTVIEEDQEFVNVYYEMPDFDVSRISPWLLRIELDRKKMTDKK 685

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME IS+KIN+GFG                            DDLNCIFNDDNAEKLVL
Sbjct: 686  LTMEQISQKINSGFG----------------------------DDLNCIFNDDNAEKLVL 717

Query: 1649 RIRIMNSDDSKMQDEEDAV 1667
            RIRI+  DD    + E+ V
Sbjct: 718  RIRIIVGDDKLADEAEEQV 736



 Score =  174 bits (440), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 91/170 (53%), Positives = 113/170 (66%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSV Q+IQLRYGEDGL GE VE Q++ TV LS+++FE
Sbjct: 318 GYIQRRLIKAMESVMVNYDGTVRNSVSQVIQLRYGEDGLAGEYVEFQKMPTVKLSYRRFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           DKYRFD +NER LR +FNEDV+REL+GS + I+ L                         
Sbjct: 378 DKYRFDVTNERYLRHLFNEDVVRELLGSPEAINIL------------------------- 412

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     E EW+KL EDR ALR++F  G++ VVLPCNL  +I+ +Q+
Sbjct: 413 ----------EVEWQKLQEDRVALRQVFPKGDTKVVLPCNLERMIWNVQK 452



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 343


>gi|31127034|gb|AAF26651.2|AF139001_1 RNA polymerase II largest subunit [Polyxenus fasciculatus]
          Length = 751

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/457 (71%), Positives = 356/457 (77%), Gaps = 56/457 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           +++QMMNILMFLPIWDGKMPQP ILKPKP+WTGKQVFSLIIPGNVNM RTHSTHPDDED 
Sbjct: 207 DKDQMMNILMFLPIWDGKMPQPAILKPKPVWTGKQVFSLIIPGNVNMIRTHSTHPDDEDD 266

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+ GILCKKSLGTS+GSLLHI  LELG E  G FY +IQTV
Sbjct: 267 GPYKWISPGDTKVLVEHGELMCGILCKKSLGTSAGSLLHIVMLELGWETAGLFYSHIQTV 326

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNNWLLLEG                                              H+IGI
Sbjct: 327 VNNWLLLEG----------------------------------------------HTIGI 340

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIAD QTY EIQ  I+KAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 341 GDTIADQQTYHEIQETIRKAKQDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDAR 400

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSA++SL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 401 DKTGGSAQRSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPH 460

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 461 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 520

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMV YD TVRNSVGQLIQLRYGEDGL G AVE Q + T+  S+K FE K+RFD SNER 
Sbjct: 521 SVMVTYDGTVRNSVGQLIQLRYGEDGLDGGAVEFQALPTLKPSNKAFEKKFRFDASNER- 579

Query: 491 TLRNVSSLRRVVNS---KPLLIGCWKLTSVEKEMNTV 524
                  LRRV N    K L      +  +E+E  T+
Sbjct: 580 ------QLRRVFNEEIVKDLFGSASAVGELEREWXTL 610



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 433  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 492

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 493  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTVRNSV 534



 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 105/170 (61%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD TVRNSVGQLIQLRYGEDGL G AVE Q + T+  S+K FE
Sbjct: 509 GYIQRRLIKAMESVMVTYDGTVRNSVGQLIQLRYGEDGLDGGAVEFQALPTLKPSNKAFE 568

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD SNERQLRR+FNE+++++L GS   + ELE+                       
Sbjct: 569 KKFRFDASNERQLRRVFNEEIVKDLFGSASAVGELER----------------------- 605

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW  L  DRE LR IF  G+S VVLPCNL  +I+  Q+
Sbjct: 606 ------------EWXTLKLDREVLRTIFPKGDSKVVLPCNLQRMIWNAQK 643



 Score =  100 bits (248), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 51/59 (86%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V GED LSKQAN+NATLL  CL+RSTLCTK VAE +RLS+EAFEWL+GEIE RFQ AQV
Sbjct: 674  VVGEDALSKQANDNATLLINCLIRSTLCTKRVAEEFRLSAEAFEWLLGEIETRFQHAQV 732



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/43 (83%), Positives = 40/43 (93%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +E + + PRQIITPQ+NRPVMGIVQDTLTAVRKMTKRDVFLDK
Sbjct: 166  IEELAIVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLDK 208


>gi|391332786|ref|XP_003740810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Metaseiulus occidentalis]
          Length = 1851

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/508 (66%), Positives = 385/508 (75%), Gaps = 48/508 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V G+D LS QANENATLLF+ L+RSTLC++ V + +RLS+EAF+WL+GEIE RF Q+Q  
Sbjct: 1017 VPGDDHLSIQANENATLLFRALLRSTLCSRRVGQEFRLSTEAFDWLLGEIEARFHQSQGQ 1076

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINISKQPK----- 1129

Query: 1051 ENSYLAGLTPS-EFFFHAMGGR--EGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQ 1107
                    TPS   F      R  E   D   +   T      L +VTANTAIYYDPDPQ
Sbjct: 1130 --------TPSLTVFLKGASARDAEKAKDVLCRLEHTT-----LRKVTANTAIYYDPDPQ 1176

Query: 1108 NTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
            NTVI EDQ+FVNVYYEMPDFDPT+ISPWLLR+ELDRKRMTDKKLTME I+EKINAGFGDD
Sbjct: 1177 NTVIAEDQDFVNVYYEMPDFDPTKISPWLLRVELDRKRMTDKKLTMEQIAEKINAGFGDD 1236

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGI 1226
            LNCIFNDDNA+KLVLRIRIMN+D  K  D  E+  DKMEDD+FLRCIE+NMLSDMTLQGI
Sbjct: 1237 LNCIFNDDNADKLVLRIRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296

Query: 1227 EAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSND 1286
            EAI KVYMHLP TD KKRI++TE+GEFKAI++WLLETDGTSLM+VLSERDVDPVRT+SND
Sbjct: 1297 EAISKVYMHLPTTDDKKRIVVTETGEFKAISEWLLETDGTSLMRVLSERDVDPVRTYSND 1356

Query: 1287 ICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1346
            I E+F VLGIEAVRK+VEKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1357 IIEVFSVLGIEAVRKAVEKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 1416

Query: 1347 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1406
            QDTGALMRCSFEETVD+LMDAA HAEAD ++GVSENII+G+L RMGTG FDL+LDAEKC+
Sbjct: 1417 QDTGALMRCSFEETVDILMDAAFHAEADKLKGVSENIILGKLARMGTGAFDLMLDAEKCR 1476

Query: 1407 DGIEIPLAT-GMMGGPA-GMFFGSAATP 1432
             GIE+ +A  GM G P  G+FFGSAATP
Sbjct: 1477 LGIEVSMAMPGMEGMPGQGVFFGSAATP 1504



 Score =  617 bits (1592), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 298/424 (70%), Positives = 340/424 (80%), Gaps = 47/424 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMMN+LMFLPIW+GK+P P ILKPKPLWT KQ+FSLIIPGNVN+ RTHSTHPD+ED G
Sbjct: 551 KDQMMNLLMFLPIWNGKVPIPAILKPKPLWTAKQLFSLIIPGNVNLIRTHSTHPDEEDDG 610

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++EHG LL GI+CKK++G S+GSL+H+ F+E+GHEV G FY ++QTVV
Sbjct: 611 PYKWISPGDTKVIIEHGQLLSGIVCKKTVGASAGSLMHVLFVEMGHEVAGAFYSHLQTVV 670

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL EG                                              HSIGIG
Sbjct: 671 NAWLLYEG----------------------------------------------HSIGIG 684

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD QTY++IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 685 DTIADQQTYMDIQNTIKKAKQDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARD 744

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSA+KSL+E+NN K+MVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 745 KTGGSAQKSLSEFNNFKSMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 804

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDD+GPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 805 IKDDFGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 864

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VM+ YD TVRNS GQ+IQ RYGEDGL G  VE Q + T+  S ++FE K+RFD +NE+  
Sbjct: 865 VMICYDGTVRNSNGQVIQFRYGEDGLDGCCVETQYLATIKPSDRQFEQKFRFDVANEK-L 923

Query: 492 LRNV 495
           LR V
Sbjct: 924 LRKV 927



 Score =  264 bits (675), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 133/185 (71%), Positives = 152/185 (82%), Gaps = 5/185 (2%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + +VRK+VEKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL
Sbjct: 1363 VLGIEAVRKAVEKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 1422

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
            MRCSFEETVD+LMDAA HAEAD ++GVSENII+G+L RMGTG FDL+LDAEKC+ GIE+ 
Sbjct: 1423 MRCSFEETVDILMDAAFHAEADKLKGVSENIILGKLARMGTGAFDLMLDAEKCRLGIEVS 1482

Query: 896  LAT-GMMGGPA-GMFFGSAATP-SSMSPQMTPW-AQSTPAYNALMSPGAAMTPGGPGFSP 951
            +A  GM G P  G+FFGSAATP + MSPQMTPW A  TPAY  + SP + MTPG  GFSP
Sbjct: 1483 MAMPGMEGMPGQGVFFGSAATPMAGMSPQMTPWNAGQTPAY-GMWSPTSNMTPGAAGFSP 1541

Query: 952  SVAGE 956
            S   E
Sbjct: 1542 SAQSE 1546



 Score =  211 bits (536), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 125/189 (66%), Gaps = 36/189 (19%)

Query: 1500 ITPQNNRPVMGIVQDTLTAVRKMTKRDVF-------LDKVTANTAIYYDPDPQNTVIPED 1552
            I+ Q   P + +     +A      +DV        L KVTANTAIYYDPDPQNTVI ED
Sbjct: 1124 ISKQPKTPSLTVFLKGASARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAED 1183

Query: 1553 QEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSP 1612
            Q+FVNVYYEMPDFDPT+ISPWLLR+ELDRKRMTDKKLTME I+EKINAGFG         
Sbjct: 1184 QDFVNVYYEMPDFDPTKISPWLLRVELDRKRMTDKKLTMEQIAEKINAGFG--------- 1234

Query: 1613 TDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQD-EEDAVDKME 1671
                               DDLNCIFNDDNA+KLVLRIRIMN+D  K  D  E+  DKME
Sbjct: 1235 -------------------DDLNCIFNDDNADKLVLRIRIMNNDGDKFADGAEEQADKME 1275

Query: 1672 DDMFLRCIE 1680
            DD+FLRCIE
Sbjct: 1276 DDVFLRCIE 1284



 Score =  167 bits (423), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/199 (48%), Positives = 119/199 (59%), Gaps = 18/199 (9%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD+GPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 776  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDFGPESRGFVENSYLAGLTPSEFFFHAM 835

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   +  I YD     TV   + + +   Y     D
Sbjct: 836  GGREGLIDTAVKTAETGYIQRRLIKAMESVMICYD----GTVRNSNGQVIQFRYGEDGLD 891

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN 1188
               +    L       R  ++K   +  +EK+       L  ++ +D  ++L       N
Sbjct: 892  GCCVETQYLATIKPSDRQFEQKFRFDVANEKL-------LRKVYTEDVVKEL-------N 937

Query: 1189 SDDSKMQDEEDAVDKMEDD 1207
            S  S + + E   D ++ D
Sbjct: 938  SSASAVAEMEREWDCLKKD 956



 Score =  147 bits (370), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 103/170 (60%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVM+ YD TVRNS GQ+IQ RYGEDGL G  VE Q + T+  S ++FE
Sbjct: 852 GYIQRRLIKAMESVMICYDGTVRNSNGQVIQFRYGEDGLDGCCVETQYLATIKPSDRQFE 911

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NE                                   K LR+++ EDV++EL
Sbjct: 912 QKFRFDVANE-----------------------------------KLLRKVYTEDVVKEL 936

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
             S   ++E+E+EW+ L +DRE LR +F +G S+VVLPCNL  +++  Q+
Sbjct: 937 NSSASAVAEMEREWDCLKKDREILRNVFPTGTSSVVLPCNLSRMVWNAQK 986



 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/77 (85%), Positives = 71/77 (92%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            +VEKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1372 AVEKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1431

Query: 576  DVLMDAAAHAEADPMRG 592
            D+LMDAA HAEAD ++G
Sbjct: 1432 DILMDAAFHAEADKLKG 1448



 Score = 73.6 bits (179), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 39/43 (90%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +E + + PRQIITPQ N+PVMGIVQDTLTAVRKMTKRDV+L+K
Sbjct: 509  IEQLAMVPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVYLEK 551



 Score = 70.5 bits (171), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 39/50 (78%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE   LGMD ++A+P WM++TVL VPPL VRPAVVM GSARNQ+ + + L
Sbjct: 225 EECFCLGMDERYAKPSWMVLTVLAVPPLCVRPAVVMFGSARNQDDLTHKL 274


>gi|38232373|gb|AAR15022.1| RNA polymerase II largest subunit [Skogsbergia lerneri]
          Length = 445

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/426 (74%), Positives = 345/426 (80%), Gaps = 47/426 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +E+MMN+LM+LP WDGKMPQP ILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 17  KEEMMNLLMYLPSWDGKMPQPSILKPKPLWTGKQLFSLIIPGNVNMIRTHSTHPDDEDKG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKKSLG S+GSLLHI ++ELGHE+CG FYGNIQTVV
Sbjct: 77  PYKWISPGDTKVMVEHGDLVMGILCKKSLGASAGSLLHIVWMELGHEICGEFYGNIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL+EG                                              HSIGIG
Sbjct: 137 NNWLLIEG----------------------------------------------HSIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD QTY +IQ  I+KAK DV +VI KAH  +LEPTPGNTLRQTFENQVNRILN+ARD
Sbjct: 151 DTIADNQTYHDIQNTIRKAKRDVADVITKAHYDELEPTPGNTLRQTFENQVNRILNEARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAK SLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR+LPHF
Sbjct: 211 KTGGSAKMSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRSLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           I DDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IADDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNSVGQLIQLRYGEDGL GE VE Q I T+  S+  F  +++FDP+NE+  
Sbjct: 331 VMVHYDGTVRNSVGQLIQLRYGEDGLAGEWVEFQSIPTIKPSNTAFHKQFKFDPTNEK-Y 389

Query: 492 LRNVSS 497
           LR + S
Sbjct: 390 LRRIFS 395



 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/161 (55%), Positives = 107/161 (66%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGL GE VE Q I T+  S+  F 
Sbjct: 318 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGEWVEFQSIPTIKPSNTAFH 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FDP+NE+ LRRIF+EDV++E+MGSGD+I E+EKE      W+QL +          
Sbjct: 378 KQFKFDPTNEKYLRRIFSEDVVKEVMGSGDMIPEIEKE------WEQLMK---------- 421

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                              DRE LR IF +G+S VVLPCNL
Sbjct: 422 -------------------DREVLRTIFPAGDSQVVLPCNL 443



 Score =  166 bits (420), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKR+LPHFI DDYGPES+GFVENSYLAGLTPSEFFFHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRSLPHFIADDYGPESKGFVENSYLAGLTPSEFFFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 343


>gi|31127022|gb|AAF26634.2|AF138984_1 RNA polymerase II largest subunit [Hutchinsoniella macracantha]
          Length = 445

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/418 (74%), Positives = 339/418 (81%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ MN+LMFLP W+GK+PQP I KPKPLWTGKQ+FSLIIPG+VN+ RTHSTHPDDED G
Sbjct: 17  KEQFMNLLMFLPSWNGKLPQPAIFKPKPLWTGKQLFSLIIPGDVNIIRTHSTHPDDEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VE G L+MGI+CKK++G S+GSLLH+ F ELG E  G FYG+IQTVV
Sbjct: 77  PYKWISPGDTKVMVEQGDLIMGIVCKKTVGASAGSLLHVVFQELGFEAAGYFYGDIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 137 NNWLLYEG----------------------------------------------HSIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD QTY +I+ AIKKAKEDVIEVIQKAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 151 DTIADSQTYADIRGAIKKAKEDVIEVIQKAHNTELEPTPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SAKKSLTE+NN K MVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGASAKKSLTEFNNFKIMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTP EF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDYGPESRGFVENSYLAGLTPMEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMVHYD T+RNSVGQLIQLRYGEDGLCGE VE Q + T+ LS K FE K++FDP+NER
Sbjct: 331 VMVHYDGTIRNSVGQLIQLRYGEDGLCGEQVEFQSMPTIKLSDKAFERKFKFDPTNER 388



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/161 (53%), Positives = 107/161 (66%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD T+RNSVGQLIQLRYGEDGLCGE VE Q + T+ LS K FE
Sbjct: 318 GYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLCGEQVEFQSMPTIKLSDKAFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LR  F ED+++E++G+   IS                           
Sbjct: 378 RKFKFDPTNERNLRHTFVEDIVKEMIGTAHTIS--------------------------- 410

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                   ++E+E+E+L +DREALR+IF +GE+ VVLPCNL
Sbjct: 411 --------DIEQEFEQLAKDREALRQIFPTGENKVVLPCNL 443



 Score =  166 bits (421), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP EF+FHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPMEFYFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSV 343


>gi|72187100|gb|AAC03141.2| RNA polymerase II largest subunit [Scutigera coleoptrata]
          Length = 582

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/458 (70%), Positives = 359/458 (78%), Gaps = 57/458 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMMN+LMFLPIWDGKMP P ILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 56  KDQMMNLLMFLPIWDGKMPMPAILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDEG 115

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+ GILCKK+LGTS+GSLLHI  LELG E+ G FY +IQTVV
Sbjct: 116 PYKWISPGDTKVLVEHGDLISGILCKKTLGTSAGSLLHIVMLELGWEIAGTFYWHIQTVV 175

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              H+IGIG
Sbjct: 176 NNWLLLEG----------------------------------------------HTIGIG 189

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY++IQ +IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 190 DTIADPQTYIDIQNSIKKAKQDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARD 249

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 250 KTGSSAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 309

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 310 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 369

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VM+ YD TVRNSVGQLIQLRYGEDGL   AVE Q + T+  S+K FE K+RFD SNER  
Sbjct: 370 VMITYDGTVRNSVGQLIQLRYGEDGLDAGAVEFQFLPTLKPSNKAFEKKFRFDISNER-- 427

Query: 492 LRNVSSLRRVVNS---KPLLIGCWKLTSVEKEMNTVLQ 526
                 L++V N    K L+     +  +E+E  T+LQ
Sbjct: 428 -----QLKKVFNEDVVKELMGSAHIVNELEREW-TMLQ 459



 Score =  174 bits (440), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 94/180 (52%), Positives = 115/180 (63%), Gaps = 11/180 (6%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 281  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 340

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   +  I YD   +N+V     + + + Y     D
Sbjct: 341  GGREGLIDTAVKTAETGYIQRRLIKAMESVMITYDGTVRNSV----GQLIQLRYGEDGLD 396

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN 1188
               +    L       +  +KK   +  +E+        L  +FN+D  ++L+    I+N
Sbjct: 397  AGAVEFQFLPTLKPSNKAFEKKFRFDISNER-------QLKKVFNEDVVKELMGSAHIVN 449



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 109/170 (64%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVM+ YD TVRNSVGQLIQLRYGEDGL   AVE Q + T+  S+K FE
Sbjct: 357 GYIQRRLIKAMESVMITYDGTVRNSVGQLIQLRYGEDGLDAGAVEFQFLPTLKPSNKAFE 416

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD SNERQL+++FNEDV++ELMGS  +++ELE                        
Sbjct: 417 KKFRFDISNERQLKKVFNEDVVKELMGSAHIVNELE------------------------ 452

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +EW  L +DREALR +F  G+S +VLPCNL  +I+  Q+
Sbjct: 453 -----------REWTMLQKDREALRSVFPKGDSKIVLPCNLQRMIWNAQK 491



 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/59 (81%), Positives = 53/59 (89%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V GED++SKQANENATLLF  LVRSTLCTK VAE +RLSSEAFEWL+GEIE RFQQ+QV
Sbjct: 522  VQGEDRISKQANENATLLFDALVRSTLCTKRVAEEFRLSSEAFEWLLGEIETRFQQSQV 580



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 40/43 (93%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +E + + PRQIITPQ+NRPVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 14   IEELAIVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLEK 56


>gi|31127048|gb|AAC03137.3| RNA polymerase II largest subunit [Mastigoproctus giganteus]
          Length = 887

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/452 (69%), Positives = 353/452 (78%), Gaps = 56/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMMN+LMFLPIWDGKMP P +LKPKPLWTGKQ+FSLIIP NVN+ RTHSTHPDDED G
Sbjct: 196 KDQMMNLLMFLPIWDGKMPMPAVLKPKPLWTGKQLFSLIIPDNVNLIRTHSTHPDDEDDG 255

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++EHG L+ GI+CKK++G++SGSL+H+ F ELGHEV G FYG+IQTVV
Sbjct: 256 PYKWISPGDTKVLIEHGQLISGIVCKKTVGSASGSLMHVVFAELGHEVAGAFYGHIQTVV 315

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              H+IGIG
Sbjct: 316 NNWLLLEG----------------------------------------------HTIGIG 329

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY++IQ  IKKAK DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 330 DTIADPQTYIDIQNTIKKAKHDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARD 389

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 390 KTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 449

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 450 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 509

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VM  YD T+RNS GQ+IQLRYGEDGL G AVE Q + T+  S+K FE ++RFD +NER  
Sbjct: 510 VMATYDGTIRNSTGQVIQLRYGEDGLDGSAVEFQSLPTLKPSNKAFEKRFRFDAANER-- 567

Query: 492 LRNVSSLRRVVNS---KPLLIGCWKLTSVEKE 520
                 LRR+      + LL     L+ +EKE
Sbjct: 568 -----HLRRIFTEDVVRDLLGSATALSELEKE 594



 Score =  240 bits (612), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 140/249 (56%), Positives = 154/249 (61%), Gaps = 51/249 (20%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV- 1011
            V GED+LS QANENATLLF+ L+RSTLCTK VAE +RLSSEAFEWL+GEI+ RFQQAQV 
Sbjct: 662  VPGEDRLSIQANENATLLFRALLRSTLCTKRVAEEFRLSSEAFEWLLGEIDTRFQQAQVQ 721

Query: 1012 ---------------------IACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
                                         V  K +  G  +  L   I     P+     
Sbjct: 722  PXXXXXXXXXXXXXXXXXXXXXXXXXXAGVSAKNVTLGVPR--LKEIINISKRPK----- 774

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                    TPS   F        L   A + AE   +VL       L +VTANTAIYYDP
Sbjct: 775  --------TPSLTVF--------LTGAAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDP 818

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQNTVI EDQEFVNVYYEMPDFDP+RISPWLLRIELDRKRMTDKKLTME I+EKINAGF
Sbjct: 819  DPQNTVIAEDQEFVNVYYEMPDFDPSRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGF 878

Query: 1165 GDDLNCIFN 1173
            GDDLNCIFN
Sbjct: 879  GDDLNCIFN 887



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 85/101 (84%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 421  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 480

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            GGREGLIDTAVKTAET  +   L +   +    YD   +N+
Sbjct: 481  GGREGLIDTAVKTAETGYIQRRLIKAMESVMATYDGTIRNS 521



 Score =  164 bits (415), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVM  YD T+RNS GQ+IQLRYGEDGL G AVE Q + T+  S+K FE
Sbjct: 497 GYIQRRLIKAMESVMATYDGTIRNSTGQVIQLRYGEDGLDGSAVEFQSLPTLKPSNKAFE 556

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            ++RFD +NER LRRIF EDV+R+L+GS   +SELEKE      W               
Sbjct: 557 KRFRFDAANERHLRRIFTEDVVRDLLGSATALSELEKE------W--------------- 595

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                         E+L +DRE LR +F +G+S VVLPCNL  +I+  Q+
Sbjct: 596 --------------ERLKKDREVLRTVFPTGDSKVVLPCNLQRMIWNAQK 631



 Score =  160 bits (404), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 74/79 (93%), Positives = 76/79 (96%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDP+RISPWLLRIELDRKRMTDKK
Sbjct: 805  LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPSRISPWLLRIELDRKRMTDKK 864

Query: 1589 LTMEAISEKINAGFGDDLN 1607
            LTME I+EKINAGFGDDLN
Sbjct: 865  LTMEQIAEKINAGFGDDLN 883



 Score = 74.7 bits (182), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 40/43 (93%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            V+ + + PRQIITPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 154  VQELALVPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLEK 196


>gi|31127046|gb|AAC03136.3| RNA polymerase II largest subunit [Limulus polyphemus]
          Length = 778

 Score =  639 bits (1649), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 313/452 (69%), Positives = 353/452 (78%), Gaps = 56/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMMN+LM+LPIWDGKMP P ILKPKPLWTGKQ+FSLIIP N+N+ RTHSTHPD+ED G
Sbjct: 87  KDQMMNLLMYLPIWDGKMPMPAILKPKPLWTGKQLFSLIIPPNINLIRTHSTHPDEEDDG 146

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++EHG L+ GI+CKK++G SSGSL+H+ F ELGHEV G+FYG+IQTVV
Sbjct: 147 PYKWISPGDTKVLIEHGELISGIVCKKTVGASSGSLMHVVFNELGHEVSGQFYGHIQTVV 206

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              H+IGIG
Sbjct: 207 NNWLLLEG----------------------------------------------HTIGIG 220

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY+EIQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 221 DTIADPQTYIEIQNTIKKAKQDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARD 280

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 281 KTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 340

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 341 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 400

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VM  YD TVRNS GQ+IQL+YGEDGL G AVE Q + T+  S K FE K+RF+ SNER  
Sbjct: 401 VMATYDGTVRNSTGQVIQLKYGEDGLDGTAVEVQSLPTLKPSDKAFEKKFRFNASNER-- 458

Query: 492 LRNVSSLRRVVNS---KPLLIGCWKLTSVEKE 520
                 LRR+      + L+     L+ +EKE
Sbjct: 459 -----YLRRIFTEDVVRDLMGSATALSELEKE 485



 Score =  236 bits (602), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 137/249 (55%), Positives = 154/249 (61%), Gaps = 51/249 (20%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV- 1011
            V GED+LS QAN+NAT+LF+ L+RSTLC K VAE +RLSSE+F+WL+GEIE RFQQAQV 
Sbjct: 553  VPGEDRLSIQANDNATILFRALLRSTLCAKRVAEEFRLSSESFQWLLGEIEARFQQAQVQ 612

Query: 1012 ---------------------IACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
                                         V  K +  G  +  L   I     P+     
Sbjct: 613  PXXXXXXXXXXXXXXXXXXXXXXXXXXAGVSAKNVTLGVPR--LKEIINISKKPK----- 665

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                    TPS   F        L  +A + AE   +VL       L +VTANTAIYYDP
Sbjct: 666  --------TPSLTVF--------LTGSAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDP 709

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGF
Sbjct: 710  DPQNTVIVEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGF 769

Query: 1165 GDDLNCIFN 1173
            GDDLNCIFN
Sbjct: 770  GDDLNCIFN 778



 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 91/170 (53%), Positives = 105/170 (61%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVM  YD TVRNS GQ+IQL+YGEDGL G AVE Q + T+  S K FE
Sbjct: 388 GYIQRRLIKAMESVMATYDGTVRNSTGQVIQLKYGEDGLDGTAVEVQSLPTLKPSDKAFE 447

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RF+ SNER LRRIF EDV+R+LMGS   +SELEKE                      
Sbjct: 448 KKFRFNASNERYLRRIFTEDVVRDLMGSATALSELEKE---------------------- 485

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WEKL  DRE LR IF +G+S VVLPCNL  +I+  Q+
Sbjct: 486 -------------WEKLKHDRELLRAIFPTGDSKVVLPCNLQRMIWSAQK 522



 Score =  167 bits (422), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 85/101 (84%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 312  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 371

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            GGREGLIDTAVKTAET  +   L +   +    YD   +N+
Sbjct: 372  GGREGLIDTAVKTAETGYIQRRLIKAMESVMATYDGTVRNS 412



 Score =  161 bits (407), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 75/79 (94%), Positives = 76/79 (96%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 696  LRKVTANTAIYYDPDPQNTVIVEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 755

Query: 1589 LTMEAISEKINAGFGDDLN 1607
            LTME I+EKINAGFGDDLN
Sbjct: 756  LTMEQIAEKINAGFGDDLN 774



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 41/54 (75%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            +E + +  R IITPQ+N+PVMGIVQDTLTAVRKMT+RDVFL+K      + Y P
Sbjct: 45   IEQLAMVSRNIITPQSNKPVMGIVQDTLTAVRKMTRRDVFLEKDQMMNLLMYLP 98


>gi|72255755|gb|AAK12725.2| RNA polymerase II largest subunit [Hadrurus arizonensis]
          Length = 543

 Score =  639 bits (1648), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 304/418 (72%), Positives = 341/418 (81%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LM+LPIWDGKMP P ILKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPD+ED G
Sbjct: 17  KEQMMNLLMYLPIWDGKMPMPAILKPKPLWTGKQIFSLIIPGNVNLIRTHSTHPDEEDEG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++E+G L+ GI+CKK++G++SGSL+H+ F ELGHEV G FYG+IQTVV
Sbjct: 77  PYKWISPGDTKVLIEYGELISGIVCKKTVGSASGSLMHVVFAELGHEVAGAFYGHIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              H+IGIG
Sbjct: 137 NNWLLLEG----------------------------------------------HTIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY++IQ  IKKAK+DV +VI+KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 151 DTIADPQTYVDIQNTIKKAKQDVTDVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+EYNN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGASAQKSLSEYNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDD GPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDNGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VM  YD TVRNSVGQ+I LRYGEDGL G +VE Q + T+  S+K FE K++FDPSNER
Sbjct: 331 VMATYDGTVRNSVGQVISLRYGEDGLDGSSVEFQSLPTLKPSNKAFERKFKFDPSNER 388



 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 85/102 (83%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD GPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDNGPESRGFVENSYLAGLTPSEFFFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +    YD   +N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMATYDGTVRNSV 343



 Score =  151 bits (381), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 105/170 (61%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVM  YD TVRNSVGQ+I LRYGEDGL G +VE Q + T+  S+K FE
Sbjct: 318 GYIQRRLIKAMESVMATYDGTVRNSVGQVISLRYGEDGLDGSSVEFQSLPTLKPSNKAFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDPSNER LRRIF EDV+RELMGS   +SELE+E                      
Sbjct: 378 RKFKFDPSNERYLRRIFTEDVVRELMGSATALSELEREWE-------------------- 417

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                          +L +DR  LR IF +G+S VVLPCNL  +I+  Q+
Sbjct: 418 ---------------RLEKDRRVLRSIFPTGDSKVVLPCNLQRMIWNAQK 452



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 52/59 (88%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V GED+LS QANENATLLF+ L+RSTLCTK VAE +RLSSEAFEWL+GEIE RF QAQV
Sbjct: 483  VPGEDRLSIQANENATLLFRALLRSTLCTKRVAEEFRLSSEAFEWLLGEIETRFHQAQV 541


>gi|31126986|gb|AAK11870.2| RNA polymerase II largest subunit [Abacion magnum]
          Length = 624

 Score =  638 bits (1645), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 320/452 (70%), Positives = 354/452 (78%), Gaps = 56/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +E MMN+LMFLPIWDGK+PQP ILKPKPLWTGKQ+FSLIIPGNVN  RTHSTHPDDED  
Sbjct: 196 KEHMMNLLMFLPIWDGKVPQPAILKPKPLWTGKQLFSLIIPGNVNCIRTHSTHPDDEDES 255

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+ GILCKK+LGTS+GSLLHI  LELG EV G FY +IQTV+
Sbjct: 256 PYKWISPGDTKVLVEHGELICGILCKKTLGTSAGSLLHIVMLELGWEVAGYFYWHIQTVI 315

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              H+IGIG
Sbjct: 316 NNWLLLEG----------------------------------------------HTIGIG 329

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY++IQ +IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 330 DTIADPQTYVDIQNSIKKAKQDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARD 389

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSA+KSL+E+NN KAMVV+G+K S INISQVIACVGQQNVEG+RIPFGFRKRTLPHF
Sbjct: 390 KTGGSAQKSLSEFNNFKAMVVSGAKXSKINISQVIACVGQQNVEGRRIPFGFRKRTLPHF 449

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 450 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 509

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV YD T+RNSV QLIQLRYGEDGL G AVE Q + T+  SHK FE K++FD +NER  
Sbjct: 510 VMVTYDGTIRNSVCQLIQLRYGEDGLDGGAVEMQNLPTLKPSHKVFEKKFKFDVTNER-- 567

Query: 492 LRNVSSLRRVVNS---KPLLIGCWKLTSVEKE 520
                 LRRV N    K L+   + +  +EKE
Sbjct: 568 -----HLRRVFNEDIVKELVGSAYAVAELEKE 594



 Score =  170 bits (430), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 92/182 (50%), Positives = 116/182 (63%), Gaps = 11/182 (6%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIACVGQQNVEG+RIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 412  GAKXSKINISQVIACVGQQNVEGRRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 471

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
            PSEFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N+V     + + 
Sbjct: 472  PSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTIRNSVC----QLIQ 527

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            + Y     D   +    L       ++ +KK   +  +E+        L  +FN+D  ++
Sbjct: 528  LRYGEDGLDGGAVEMQNLPTLKPSHKVFEKKFKFDVTNER-------HLRRVFNEDIVKE 580

Query: 1180 LV 1181
            LV
Sbjct: 581  LV 582



 Score =  154 bits (390), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/161 (52%), Positives = 103/161 (63%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD T+RNSV QLIQLRYGEDGL G AVE Q + T+  SHK FE
Sbjct: 497 GYIQRRLIKAMESVMVTYDGTIRNSVCQLIQLRYGEDGLDGGAVEMQNLPTLKPSHKVFE 556

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD +NER LRR+FNED+++EL+GS   ++ELEKE      W+ L+R          
Sbjct: 557 KKFKFDVTNERHLRRVFNEDIVKELVGSAYAVAELEKE------WEALKR---------- 600

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                              DR+ LR+IF  G+S VVLP N+
Sbjct: 601 -------------------DRDILRQIFPKGDSKVVLPGNI 622



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 40/43 (93%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +E + + PRQIITPQ+NRPVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 154  IEELAIVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFIEK 196


>gi|31127012|gb|AAF26625.2|AF138975_1 RNA polymerase II largest subunit [Carcinoscorpius rotundicauda]
          Length = 445

 Score =  638 bits (1645), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 313/452 (69%), Positives = 353/452 (78%), Gaps = 56/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMMN+LM+LPIWDGKMP P ILKPKPLWTGKQ+FSLIIP N+N+ RTHSTHPD+ED G
Sbjct: 17  KDQMMNLLMYLPIWDGKMPMPAILKPKPLWTGKQLFSLIIPPNINLIRTHSTHPDEEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++EHG L+ GI+CKK++G SSGSL+H+ F ELGHEV G+FYG+IQTVV
Sbjct: 77  PYKWISPGDTKVLIEHGELISGIVCKKTVGASSGSLMHVVFNELGHEVAGQFYGHIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              H+IGIG
Sbjct: 137 NNWLLLEG----------------------------------------------HTIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY+EIQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 151 DTIADPQTYIEIQNTIKKAKQDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VM  YD TVRNS GQ+IQL+YGEDGL G AVE Q + T+  S K FE K+RF+ SNER  
Sbjct: 331 VMATYDGTVRNSTGQVIQLKYGEDGLDGTAVEFQSLPTLKPSDKAFEKKFRFNVSNER-- 388

Query: 492 LRNVSSLRRVVNS---KPLLIGCWKLTSVEKE 520
                 LRR+      + L+     L+ +EKE
Sbjct: 389 -----YLRRIFTEDVVRDLMGSATALSELEKE 415



 Score =  167 bits (422), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 85/102 (83%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +    YD   +N+ 
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMATYDGTVRNST 343



 Score =  164 bits (414), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 89/161 (55%), Positives = 100/161 (62%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVM  YD TVRNS GQ+IQL+YGEDGL G AVE Q + T+  S K FE
Sbjct: 318 GYIQRRLIKAMESVMATYDGTVRNSTGQVIQLKYGEDGLDGTAVEFQSLPTLKPSDKAFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RF+ SNER LRRIF EDV+R+LMGS   +SELEKE                      
Sbjct: 378 KKFRFNVSNERYLRRIFTEDVVRDLMGSATALSELEKE---------------------- 415

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                        WEKL  DRE LR IF +G+S VVLPCNL
Sbjct: 416 -------------WEKLKHDRELLRAIFPTGDSKVVLPCNL 443


>gi|291220940|ref|XP_002730482.1| PREDICTED: DNA-directed RNA polymerase II A-like [Saccoglossus
            kowalevskii]
          Length = 1932

 Score =  637 bits (1644), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 325/479 (67%), Positives = 373/479 (77%), Gaps = 21/479 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G+D +S+QA ENATL    L+R+TLC++   E +RLS+EAFEWL+GEIE RFQQ+Q  
Sbjct: 1024 VKGDDSISRQAQENATLNMNILIRATLCSRRATEEFRLSAEAFEWLLGEIETRFQQSQAQ 1083

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-------VENSYLAGLTPSEFFF 1065
            A      +  + +     + TL  F       ++          + N      TPS   F
Sbjct: 1084 AGEMCGPLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVF 1143

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE   +VL       L +VTANTAIYYDPDPQNTVI EDQ++VN
Sbjct: 1144 --------LTGQAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVITEDQDWVN 1195

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDPTRISPWLLRIELDRKRMTDKKL+ME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1196 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLSMEQIAEKINAGFGDDLNCIFNDDNAEK 1255

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQGIE I KVY+HLP+ 
Sbjct: 1256 LVLRIRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGIEQISKVYLHLPKE 1315

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            +SKKRIIITESGEFKA+ +W+LETDGTSLMKVLSERDVDPVRT SNDICEIFQVLGIEAV
Sbjct: 1316 ESKKRIIITESGEFKALQEWILETDGTSLMKVLSERDVDPVRTTSNDICEIFQVLGIEAV 1375

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVEKE+N V+ F G YVNYRHLALLCD+MTAKGHLMAITRHGINRQD GALMRCSFEE
Sbjct: 1376 RKSVEKELNHVISFDGSYVNYRHLALLCDIMTAKGHLMAITRHGINRQDVGALMRCSFEE 1435

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMM 1418
            TVD+LMDAA HAE D M+GVSENI++GQL ++GTG FDLLLD EKCK G+EIP   G+M
Sbjct: 1436 TVDILMDAAMHAETDHMKGVSENIMLGQLAKIGTGSFDLLLDGEKCKYGMEIPSNIGLM 1494



 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 287/418 (68%), Positives = 334/418 (79%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +E +M +LM+LP WDGKMPQPCILKPKPLWTGKQ+ SLI+PGNVN+ RTHSTHPD+ED+G
Sbjct: 558 KEDVMILLMWLPSWDGKMPQPCILKPKPLWTGKQLMSLIVPGNVNLVRTHSTHPDEEDTG 617

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++E+G +L GILCKK+LGTSSGSL H+ F+E+GHE+   FYGNIQTVV
Sbjct: 618 PYKWISPGDTKVLIENGEVLSGILCKKTLGTSSGSLGHVVFVEMGHEIAKEFYGNIQTVV 677

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NN+LL+EG                                              H+IG+G
Sbjct: 678 NNYLLIEG----------------------------------------------HTIGMG 691

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           D IAD QTY +IQ  I+KAK+DVIEVI+KAHN +LEP+PGNTLRQTFENQVNR+LNDARD
Sbjct: 692 DCIADAQTYDDIQNTIRKAKQDVIEVIEKAHNDELEPSPGNTLRQTFENQVNRLLNDARD 751

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+E+NN KAMVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHF
Sbjct: 752 KTGSSAQKSLSEFNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHF 811

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTP+EF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 812 IKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 871

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV YD TVRNS   L+QLRYGEDGL G  VE Q + ++  S++ FE +++FD +++R
Sbjct: 872 VMVRYDGTVRNSNDALVQLRYGEDGLDGAHVEFQDMPSMKPSNQAFEKRFKFDYTSDR 929



 Score =  248 bits (634), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 162/316 (51%), Positives = 201/316 (63%), Gaps = 27/316 (8%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E VD        R    ++L ++   G  
Sbjct: 1244 LNCIFNDDNAEKLVLRIRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQG-- 1301

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVVLP-------CNLMEVIFILQRWKLWGNEN 769
            I ++ K +  L ++    R I + SGE   +          +LM+V+       +    N
Sbjct: 1302 IEQISKVYLHLPKEESKKRIIITESGEFKALQEWILETDGTSLMKVLSERDVDPVRTTSN 1361

Query: 770  LRFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHG 826
               +C+I  VL   +VRKSVEKE+N V+ F G YVNYRHLALLCD+MTAKGHLMAITRHG
Sbjct: 1362 --DICEIFQVLGIEAVRKSVEKELNHVISFDGSYVNYRHLALLCDIMTAKGHLMAITRHG 1419

Query: 827  INRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 886
            INRQD GALMRCSFEETVD+LMDAA HAE D M+GVSENI++GQL ++GTG FDLLLD E
Sbjct: 1420 INRQDVGALMRCSFEETVDILMDAAMHAETDHMKGVSENIMLGQLAKIGTGSFDLLLDGE 1479

Query: 887  KCKDGIEIPLATGMM--GGPAGMFFGSAATPS-SMSPQMTPWAQ-STPAYNALMSP--GA 940
            KCK G+EIP   G+M  GG  G+FFGS  TP+  MSPQMTPW Q +TPAY A  SP  G+
Sbjct: 1480 KCKYGMEIPSNIGLMPGGGTTGIFFGSLGTPAPGMSPQMTPWNQGATPAYGAAWSPGVGS 1539

Query: 941  AMTPGGPGFSPSVAGE 956
             MTPG  GFSPS   +
Sbjct: 1540 GMTPGAAGFSPSAQSD 1555



 Score =  222 bits (566), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 110/152 (72%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQ++VNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1167 LRKVTANTAIYYDPDPQNTVITEDQDWVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1226

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L+ME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1227 LSMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1258

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++K QDEE+ VDKM+DD+FLRCIE
Sbjct: 1259 RIRIMNSDENKYQDEEEQVDKMDDDVFLRCIE 1290



 Score =  164 bits (416), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 77/112 (68%), Positives = 89/112 (79%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 772  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAG 831

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            LTP+EF+FHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N+
Sbjct: 832  LTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVRYDGTVRNS 883



 Score =  140 bits (353), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 64/77 (83%), Positives = 69/77 (89%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVEKE+N V+ F G YVNYRHLALLCD+MTAKGHLMAITRHGINRQD GALMRCSFEETV
Sbjct: 1378 SVEKELNHVISFDGSYVNYRHLALLCDIMTAKGHLMAITRHGINRQDVGALMRCSFEETV 1437

Query: 576  DVLMDAAAHAEADPMRG 592
            D+LMDAA HAE D M+G
Sbjct: 1438 DILMDAAMHAETDHMKG 1454



 Score =  120 bits (300), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 106/196 (54%), Gaps = 50/196 (25%)

Query: 592  GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
            GYIQRRLIKAMESVMV YD TVRNS   L+QLRYGEDGL G  VE Q + ++  S++ FE
Sbjct: 859  GYIQRRLIKAMESVMVRYDGTVRNSNDALVQLRYGEDGLDGAHVEFQDMPSMKPSNQAFE 918

Query: 652  DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +++FD +++R LR                                   R   EDV++++
Sbjct: 919  KRFKFDYTSDRVLR-----------------------------------RFLTEDVVKDI 943

Query: 712  MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQRWKLWGNENLR 771
            +GS  V + LE+E+E L EDR  LR IF + ES VVLPCNL  +I     W         
Sbjct: 944  IGSAQVQAALEEEFELLKEDRHTLRSIFPTRESKVVLPCNLQRMI-----WN-------- 990

Query: 772  FLCKIIFVLSVRKSVE 787
               K IF ++VRK  +
Sbjct: 991  --AKKIFHINVRKPTD 1004



 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 46/50 (92%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EES+I+GMDP++ RPDWM+VTVLPVPPL+VRPAVVM+GSA+NQ+ + + L
Sbjct: 232 EESLIIGMDPQYTRPDWMIVTVLPVPPLAVRPAVVMNGSAKNQDDLTHKL 281



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 37/43 (86%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +  I + PRQIITPQ+N+PVMGIVQD+L AVRK TKRDVFL+K
Sbjct: 516  ISEIILVPRQIITPQSNKPVMGIVQDSLAAVRKFTKRDVFLEK 558


>gi|38232379|gb|AAR15025.1| RNA polymerase II largest subunit [Thereuonema sp. JCR-2003]
          Length = 445

 Score =  637 bits (1642), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 317/456 (69%), Positives = 355/456 (77%), Gaps = 56/456 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++Q+MN+LMFLPIWDGKMP P ILKPKPLWTGKQ+FSLIIP NVNM RTHS HPD+ED G
Sbjct: 17  KDQVMNLLMFLPIWDGKMPMPAILKPKPLWTGKQIFSLIIPMNVNMIRTHSAHPDEEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+ GILCKK+LGTS+GSLLHI  LELG E+ G FY +IQTVV
Sbjct: 77  PYKWISPGDTKVLVEHGDLISGILCKKTLGTSAGSLLHIVMLELGWEIAGTFYWHIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              H+IGIG
Sbjct: 137 NNWLLLEG----------------------------------------------HTIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY++IQ +IKKAK+DVIEVI+KAHN +LEP+PGNTLRQTFENQVNRILNDARD
Sbjct: 151 DTIADPQTYIDIQNSIKKAKQDVIEVIEKAHNDELEPSPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+EYNN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGSSAQKSLSEYNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VM+ YD TVRNSVGQLIQLRYGEDGL   AVE Q + T+  S+K FE K+RFD SNER  
Sbjct: 331 VMIAYDGTVRNSVGQLIQLRYGEDGLDAGAVEFQFLPTLKPSNKAFEKKFRFDISNER-- 388

Query: 492 LRNVSSLRRVVNS---KPLLIGCWKLTSVEKEMNTV 524
                 L+++ N    K L+     +  +E+E  T+
Sbjct: 389 -----QLKKIFNEDIVKDLMGSAHIVNELEREWTTL 419



 Score =  174 bits (440), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 95/180 (52%), Positives = 114/180 (63%), Gaps = 11/180 (6%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   +  I YD   +N+V     + + + Y     D
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMIAYDGTVRNSV----GQLIQLRYGEDGLD 357

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN 1188
               +    L       +  +KK   +  +E+        L  IFN+D  + L+    I+N
Sbjct: 358  AGAVEFQFLPTLKPSNKAFEKKFRFDISNER-------QLKKIFNEDIVKDLMGSAHIVN 410



 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/161 (53%), Positives = 104/161 (64%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVM+ YD TVRNSVGQLIQLRYGEDGL   AVE Q + T+  S+K FE
Sbjct: 318 GYIQRRLIKAMESVMIAYDGTVRNSVGQLIQLRYGEDGLDAGAVEFQFLPTLKPSNKAFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD SNERQL++IFNED++++LMGS  +++ELE                        
Sbjct: 378 KKFRFDISNERQLKKIFNEDIVKDLMGSAHIVNELE------------------------ 413

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                      +EW  L +DREALR IF  G+S +VLPCNL
Sbjct: 414 -----------REWTTLQKDREALRSIFPKGDSKIVLPCNL 443


>gi|72255752|gb|AAK12730.2| RNA polymerase II largest subunit [Heterometrus spinifer]
          Length = 445

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 312/452 (69%), Positives = 353/452 (78%), Gaps = 56/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LM+LPIWDGKMP P ILKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPD+ED G
Sbjct: 17  KEQMMNLLMYLPIWDGKMPMPAILKPKPLWTGKQLFSLIIPGNVNLIRTHSTHPDEEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
            Y+WISPGDTKV++E+G L+ GI+CKK++G++SGSL+H+ F ELGHEV G FYG+IQTVV
Sbjct: 77  DYKWISPGDTKVLIEYGELISGIVCKKTVGSASGSLMHVVFAELGHEVAGAFYGHIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              H+IGIG
Sbjct: 137 NNWLLLEG----------------------------------------------HTIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY++IQ  IKKAK+DV +VI+KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 151 DTIADPQTYIDIQNTIKKAKQDVTDVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+EYNN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGASAQKSLSEYNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDD GPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDNGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VM  YD TVRNSVGQ+I LRYGEDGL G +VE Q + T+  S+K FE K+RFDPSNER  
Sbjct: 331 VMATYDGTVRNSVGQVISLRYGEDGLDGSSVEFQSLPTLKPSNKMFERKFRFDPSNER-- 388

Query: 492 LRNVSSLRRVVNS---KPLLIGCWKLTSVEKE 520
                 LRR+      + L+     L+ +EKE
Sbjct: 389 -----YLRRIFTEDVVRELMGSATALSELEKE 415



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/161 (55%), Positives = 103/161 (63%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVM  YD TVRNSVGQ+I LRYGEDGL G +VE Q + T+  S+K FE
Sbjct: 318 GYIQRRLIKAMESVMATYDGTVRNSVGQVISLRYGEDGLDGSSVEFQSLPTLKPSNKMFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDPSNER LRRIF EDV+RELMGS   +SELEKE                      
Sbjct: 378 RKFRFDPSNERYLRRIFTEDVVRELMGSATALSELEKE---------------------- 415

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                        WE+L +DR+ LR IF +G+S VVLPCNL
Sbjct: 416 -------------WERLEKDRKVLRSIFPTGDSKVVLPCNL 443



 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 85/102 (83%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD GPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDNGPESRGFVENSYLAGLTPSEFFFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +    YD   +N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMATYDGTVRNSV 343


>gi|38232371|gb|AAR15021.1| RNA polymerase II largest subunit [Scutigerella sp. Scu3]
          Length = 624

 Score =  633 bits (1633), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 319/453 (70%), Positives = 350/453 (77%), Gaps = 56/453 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           +++QMMN+LMFLP W+GK+PQPCILKPKP WTGKQ+FSLIIPGNVN  RTHSTHPD+ED 
Sbjct: 195 DKDQMMNLLMFLPTWNGKVPQPCILKPKPQWTGKQIFSLIIPGNVNCIRTHSTHPDEEDD 254

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+ GILCKK+LGTS+GSLLHI  LELG E  G FY +IQTV
Sbjct: 255 GPYKWISPGDTKVLVEHGDLISGILCKKTLGTSAGSLLHIVVLELGFETAGYFYWHIQTV 314

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNNWLLLEG                                              HSIG+
Sbjct: 315 VNNWLLLEG----------------------------------------------HSIGM 328

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
            DTIADPQTY++IQ +IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 329 CDTIADPQTYVDIQNSIKKAKQDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDAR 388

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 389 DKTGGSAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPH 448

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 449 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 508

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMV YD T RNSV QLIQLRYGEDGL   AVE Q + T+  SHK FE K+RFD SNER 
Sbjct: 509 SVMVSYDGTCRNSVCQLIQLRYGEDGLDANAVEFQSLPTLKPSHKAFEXKFRFDVSNER- 567

Query: 491 TLRNVSSLRRVVNS---KPLLIGCWKLTSVEKE 520
                  LRR       K L      L+ +EKE
Sbjct: 568 ------XLRRXFTEDXVKELTGSAQALSDLEKE 594



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 421  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 480

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 481  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVSYDGTCRNSV 522



 Score =  159 bits (403), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/161 (54%), Positives = 96/161 (59%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD T RNSV QLIQLRYGEDGL   AVE Q + T+  SHK FE
Sbjct: 497 GYIQRRLIKAMESVMVSYDGTCRNSVCQLIQLRYGEDGLDANAVEFQSLPTLKPSHKAFE 556

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD SNER LRR F ED ++EL GS   +S+LEKE                      
Sbjct: 557 XKFRFDVSNERXLRRXFTEDXVKELTGSAQALSDLEKE---------------------- 594

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                        WE L  DREALR IF  G+S VVLPCNL
Sbjct: 595 -------------WEALQRDREALRSIFPKGDSKVVLPCNL 622



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 40/43 (93%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VE + + PRQIITPQ+NRPVMGIVQDTLTAVRKMTKRDVFLDK
Sbjct: 154  VEELAIVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLDK 196


>gi|260796451|ref|XP_002593218.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
 gi|229278442|gb|EEN49229.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
          Length = 1934

 Score =  632 bits (1631), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 324/518 (62%), Positives = 385/518 (74%), Gaps = 55/518 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S QA  NAT+LF  L+RSTLCT+ V E +RLS+EAF+WL+GEIE+RF QA   
Sbjct: 1019 VKGDDPISIQAQANATILFNTLLRSTLCTRRVLEEFRLSTEAFDWLLGEIESRFNQAIVQ 1078

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1079 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINVSKKPK----- 1131

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+      AE    ++       L +VTANTAIYYDP
Sbjct: 1132 --------TPSLTVF--------LLGQPANDAEKAKDILCRLEHTTLRKVTANTAIYYDP 1175

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQNTVI EDQEFVNVYYEMPDFDP RISPWLLRIELDRKRMTDKKLTME+I+EKINAGF
Sbjct: 1176 DPQNTVIEEDQEFVNVYYEMPDFDPHRISPWLLRIELDRKRMTDKKLTMESIAEKINAGF 1235

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ
Sbjct: 1236 GDDLNCIFNDDNAEKLVLRIRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQ 1295

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQ D+KKRIIIT+ GE+KA+ +W+LETDG +LMKVLSE++VDPVRT S
Sbjct: 1296 GIEQIAKVYMHLPQQDTKKRIIITDEGEYKALQEWILETDGVNLMKVLSEKNVDPVRTTS 1355

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIFQ+LGIEAVRK++EKEMN V+ F G YVNYRHLALLCD+MT KGHLMAITRHGI
Sbjct: 1356 NDIVEIFQILGIEAVRKAIEKEMNHVISFDGSYVNYRHLALLCDIMTQKGHLMAITRHGI 1415

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQ+ G LM+CSFEETVD+LM++A+H+E D M GVSENI++GQL R+GTG FDL+LDAEK
Sbjct: 1416 NRQEVGPLMKCSFEETVDILMESASHSETDFMWGVSENIMLGQLARIGTGSFDLMLDAEK 1475

Query: 1405 CKDGIEIP---LATGMMGGPA-GMFFGSAATPSSIPGP 1438
            CK G+EIP   +  G+M GP  GMFFG+A +P++   P
Sbjct: 1476 CKYGMEIPTNLVGGGLMAGPGPGMFFGNAGSPTASMSP 1513



 Score =  601 bits (1549), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 295/419 (70%), Positives = 327/419 (78%), Gaps = 46/419 (10%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++  MMN+LM+LP WDGKMPQP ILKPKPLWTGKQ+FSLIIPG+VN  R HSTHPD+EDS
Sbjct: 552 DRNDMMNLLMWLPTWDGKMPQPAILKPKPLWTGKQLFSLIIPGHVNCIRMHSTHPDEEDS 611

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VE+G L+ GILCKKSLG S GSL+HI  LE+GHE    FYG IQTV
Sbjct: 612 GPYKWISPGDTKVIVENGELISGILCKKSLGPSGGSLVHIVALEMGHETSKLFYGYIQTV 671

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNNWLLLEG                                              H+IGI
Sbjct: 672 VNNWLLLEG----------------------------------------------HTIGI 685

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GD IAD QTY +IQ  IKKAK DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 686 GDCIADTQTYQDIQNTIKKAKLDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDAR 745

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSA+KSL+E+NN K+MVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPH
Sbjct: 746 DKTGGSAQKSLSEFNNFKSMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPH 805

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT+ETGYIQRRLIKAME
Sbjct: 806 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTSETGYIQRRLIKAME 865

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           SVM+ YD TVRNS   L+QLRYGEDGL   ++E Q + T+  S++ FE K++ D  NER
Sbjct: 866 SVMIAYDGTVRNSNRHLVQLRYGEDGLDAVSIEFQNLATLKPSNRSFEKKFKLDYQNER 924



 Score =  256 bits (655), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 154/316 (48%), Positives = 200/316 (63%), Gaps = 25/316 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M + D     E+EMVD        R    ++L ++   G  
Sbjct: 1239 LNCIFNDDNAEKLVLRIRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQG-- 1296

Query: 718  ISELEKEWEKLCEDREALREIFS-SGESNVVLP-------CNLMEVIFILQRWKLWGNEN 769
            I ++ K +  L +     R I +  GE   +          NLM+V+       +    N
Sbjct: 1297 IEQIAKVYMHLPQQDTKKRIIITDEGEYKALQEWILETDGVNLMKVLSEKNVDPVRTTSN 1356

Query: 770  -LRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
             +  + +I+ + +VRK++EKEMN V+ F G YVNYRHLALLCD+MT KGHLMAITRHGIN
Sbjct: 1357 DIVEIFQILGIEAVRKAIEKEMNHVISFDGSYVNYRHLALLCDIMTQKGHLMAITRHGIN 1416

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQ+ G LM+CSFEETVD+LM++A+H+E D M GVSENI++GQL R+GTG FDL+LDAEKC
Sbjct: 1417 RQEVGPLMKCSFEETVDILMESASHSETDFMWGVSENIMLGQLARIGTGSFDLMLDAEKC 1476

Query: 889  KDGIEIP---LATGMMGGPA-GMFFGSAATPS-SMSPQMTPWAQ-STPAYNALMSP--GA 940
            K G+EIP   +  G+M GP  GMFFG+A +P+ SMSPQMTPW Q  TPAY    SP  G+
Sbjct: 1477 KYGMEIPTNLVGGGLMAGPGPGMFFGNAGSPTASMSPQMTPWQQVGTPAYGGAWSPGLGS 1536

Query: 941  AMTPGGPGFSPSVAGE 956
             MTPG  GFSPS A +
Sbjct: 1537 GMTPGAAGFSPSAASD 1552



 Score =  226 bits (577), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 113/152 (74%), Positives = 119/152 (78%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDP RISPWLLRIELDRKRMTDKK
Sbjct: 1162 LRKVTANTAIYYDPDPQNTVIEEDQEFVNVYYEMPDFDPHRISPWLLRIELDRKRMTDKK 1221

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME+I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1222 LTMESIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1253

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN+DDSKM DEE+ VDKM+DD+FLRCIE
Sbjct: 1254 RIRIMNNDDSKMMDEEEMVDKMDDDVFLRCIE 1285



 Score =  167 bits (423), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 89/162 (54%), Positives = 105/162 (64%), Gaps = 4/162 (2%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 767  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAG 826

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEF 1117
            LTPSEFFFHAMGGREGLIDTAVKT+ET  +   L +   +  I YD     TV   ++  
Sbjct: 827  LTPSEFFFHAMGGREGLIDTAVKTSETGYIQRRLIKAMESVMIAYD----GTVRNSNRHL 882

Query: 1118 VNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEK 1159
            V + Y     D   I    L       R  +KK  ++  +E+
Sbjct: 883  VQLRYGEDGLDAVSIEFQNLATLKPSNRSFEKKFKLDYQNER 924



 Score =  128 bits (322), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 95/170 (55%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVM+ YD TVRNS   L+QLRYGEDGL   ++E Q + T+  S++ FE
Sbjct: 854 GYIQRRLIKAMESVMIAYDGTVRNSNRHLVQLRYGEDGLDAVSIEFQNLATLKPSNRSFE 913

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++ D  NER LRRI  ED++RE+     + +E+E E                      
Sbjct: 914 KKFKLDYQNERYLRRILQEDIVREITSDARLQTEIEAE---------------------- 951

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        +E+L  DR+ LR +  +G++ V LPCNL  +I+  Q+
Sbjct: 952 -------------FEQLRVDRDVLRSVNQTGDAKVALPCNLARIIWNAQK 988



 Score =  127 bits (319), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 67/77 (87%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++EKEMN V+ F G YVNYRHLALLCD+MT KGHLMAITRHGINRQ+ G LM+CSFEETV
Sbjct: 1373 AIEKEMNHVISFDGSYVNYRHLALLCDIMTQKGHLMAITRHGINRQEVGPLMKCSFEETV 1432

Query: 576  DVLMDAAAHAEADPMRG 592
            D+LM++A+H+E D M G
Sbjct: 1433 DILMESASHSETDFMWG 1449



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 40/50 (80%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  I+GMDP+FARPDWM+ TVLPV PL VRP+VVM G+AR Q+ + + L
Sbjct: 227 EECSIMGMDPRFARPDWMVCTVLPVAPLQVRPSVVMFGAARGQDDLTHKL 276



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/40 (77%), Positives = 36/40 (90%)

Query: 1492 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            + + PR IITPQ+NRPVMGIVQDTLTAVRK TKRDVF+D+
Sbjct: 514  LAMVPRMIITPQSNRPVMGIVQDTLTAVRKFTKRDVFIDR 553


>gi|219879765|gb|AAR15052.2| RNA polymerase II largest subunit [Peripatus sp. Per3]
          Length = 515

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 312/452 (69%), Positives = 353/452 (78%), Gaps = 56/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +E+MMN+LM+LP WDGK+PQP ILKPKPLWTGKQ+FSL+IPGNVN+ RTHSTHPD+ED G
Sbjct: 87  KEEMMNLLMWLPSWDGKIPQPAILKPKPLWTGKQIFSLVIPGNVNLIRTHSTHPDNEDDG 146

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++EHG L+ GILCKK+LGTSSGSL+HI  LELGHEV G+ YGNIQTVV
Sbjct: 147 PYKWISPGDTKVLIEHGDLISGILCKKTLGTSSGSLVHIVMLELGHEVAGQLYGNIQTVV 206

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL+EG                                              H+IGIG
Sbjct: 207 NNWLLIEG----------------------------------------------HTIGIG 220

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY++IQ +IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 221 DTIADPQTYIDIQDSIKKAKQDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARD 280

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFR RTLPHF
Sbjct: 281 KTGGSAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHF 340

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFH+MGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 341 IKDDYGPESRGFVENSYLAGLTPSEFFFHSMGGREGLIDTAVKTAETGYIQRRLIKAMES 400

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV YD TVRNS   L+QLRYGEDGL    VE Q +  +  S+K FE K++FD +NER  
Sbjct: 401 VMVAYDGTVRNSQQYLVQLRYGEDGLDAVHVEFQSMPNLKPSNKNFEKKFKFDINNER-- 458

Query: 492 LRNVSSLRRVVNS---KPLLIGCWKLTSVEKE 520
                 LRR +N    K LL     ++ +EKE
Sbjct: 459 -----ELRRNLNEDIVKELLGSAHAISEIEKE 485



 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 82/124 (66%), Positives = 90/124 (72%), Gaps = 4/124 (3%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFH+M
Sbjct: 312  SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHSM 371

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   +  + YD     TV    Q  V + Y     D
Sbjct: 372  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVAYD----GTVRNSQQYLVQLRYGEDGLD 427

Query: 1129 PTRI 1132
               +
Sbjct: 428  AVHV 431



 Score =  147 bits (370), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 96/161 (59%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD TVRNS   L+QLRYGEDGL    VE Q +  +  S+K FE
Sbjct: 388 GYIQRRLIKAMESVMVAYDGTVRNSQQYLVQLRYGEDGLDAVHVEFQSMPNLKPSNKNFE 447

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD +NER+LRR  NED+++EL+GS   ISE+EKE                      
Sbjct: 448 KKFKFDINNERELRRNLNEDIVKELLGSAHAISEIEKE---------------------- 485

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                        WE+L  DRE LR  F +G+S VVLPCNL
Sbjct: 486 -------------WEQLRNDRENLRSTFPTGDSKVVLPCNL 513



 Score = 73.9 bits (180), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/38 (89%), Positives = 37/38 (97%)

Query: 1494 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            + PRQIITPQ+NRPVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 50   MVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLEK 87


>gi|38232241|gb|AAR14956.1| RNA polymerase II largest subunit [Chthamalus fragilis]
          Length = 445

 Score =  630 bits (1626), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 307/430 (71%), Positives = 342/430 (79%), Gaps = 53/430 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           QE+MMN+LMFLP WDGK+P P +LKP+PLWTGKQ+FSLIIPGNVNM RTHS HPDDED G
Sbjct: 17  QEEMMNLLMFLPTWDGKIPVPAVLKPRPLWTGKQLFSLIIPGNVNMIRTHSVHPDDEDHG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+V++G L+MGILCKKSLG S+GSLLHIC+LELGHE+ G FY +IQ+VV
Sbjct: 77  PYKWISPGDTKVLVDNGELIMGILCKKSLGASAGSLLHICWLELGHEIAGHFYHDIQSVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLLLEG                                              HSIGIG
Sbjct: 137 NAWLLLEG----------------------------------------------HSIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTI+DP+TY +IQ  I+KAK+DVI+VI+KAHN +LEPTPGNTLRQTFEN VNRILNDARD
Sbjct: 151 DTISDPETYSDIQKTIRKAKDDVIQVIEKAHNDELEPTPGNTLRQTFENHVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SAK SL EYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGASAKDSLREYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTP+EF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV+YD T+RNSV QL+QLRYGEDGL GE VE Q + T+ LS   F  K++F+ +NER  
Sbjct: 331 VMVNYDGTLRNSVAQLVQLRYGEDGLAGEFVEFQSLPTIKLSDAAFRRKFKFETTNER-- 388

Query: 492 LRNVSSLRRV 501
                 LRRV
Sbjct: 389 -----QLRRV 393



 Score =  167 bits (424), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/161 (52%), Positives = 106/161 (65%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD T+RNSV QL+QLRYGEDGL GE VE Q + T+ LS   F 
Sbjct: 318 GYIQRRLIKAMESVMVNYDGTLRNSVAQLVQLRYGEDGLAGEFVEFQSLPTIKLSDAAFR 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++F+ +NERQLRR+F ED++R+LMGSG++I ELE                        
Sbjct: 378 RKFKFETTNERQLRRVFQEDIVRDLMGSGEMIGELE------------------------ 413

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                      +EWE+L +DR+ LR+IF +GES VVLPCNL
Sbjct: 414 -----------REWEQLSKDRQELRQIFPTGESRVVLPCNL 443



 Score =  167 bits (422), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP+EF+FHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTLRNSV 343


>gi|327287678|ref|XP_003228555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Anolis
            carolinensis]
          Length = 1969

 Score =  630 bits (1625), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 321/510 (62%), Positives = 383/510 (75%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LSKQA ENATLLF   +RSTLC++ + E +RLS EAF+WL+GEIE++F QA   
Sbjct: 1022 VNGDDPLSKQAQENATLLFNIHLRSTLCSRRMIEEFRLSGEAFDWLLGEIESKFNQAIAH 1081

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1082 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1134

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1135 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1178

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQNTV+ EDQE+VNVYYEMPDFD TRISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1179 NPQNTVVAEDQEWVNVYYEMPDFDVTRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1238

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1239 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1298

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1299 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1358

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1359 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1418

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1419 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1478

Query: 1405 CKDGIEIPLA-TGM-MGGPAGMFFGSAATP 1432
            CK G+EIP    G+ +GGP GMFFGSA +P
Sbjct: 1479 CKYGMEIPTNIPGLGVGGPTGMFFGSAPSP 1508



 Score =  610 bits (1572), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 293/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 558 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 617

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKV+VE+G L+MGILCKKSLGTS+GSL+HI +LE+GH+V   FY NIQTV+NN
Sbjct: 618 KHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINN 677

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 678 WLLIEG----------------------------------------------HTIGIGDS 691

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 692 IADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 751

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 752 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 811

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 812 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 871

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K++FD +NER   R
Sbjct: 872 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFKFDYTNERALRR 931

Query: 494 NV 495
            +
Sbjct: 932 TL 933



 Score =  253 bits (645), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 150/313 (47%), Positives = 200/313 (63%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1242 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1299

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1300 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1359

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1360 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1419

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1420 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1479

Query: 889  KDGIEIPLA-TGM-MGGPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP    G+ +GGP GMFFGSA +P   MSP MTPW Q +TPAY A   S G+ MT
Sbjct: 1480 KYGMEIPTNIPGLGVGGPTGMFFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMT 1539

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1540 PGAAGFSPSAASD 1552



 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/152 (69%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQNTV+ EDQE+VNVYYEMPDFD TRISPWLLR+ELDRK MTD+K
Sbjct: 1165 LRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDFDVTRISPWLLRVELDRKHMTDRK 1224

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1225 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1256

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1257 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1288



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 772  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 831

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 832  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 882



 Score =  151 bits (382), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 857 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 916

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD +NER LRR   E+++++++ +  + +EL                         
Sbjct: 917 KKFKFDYTNERALRRTLQEEMVKDILSNAHIQNEL------------------------- 951

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     E+E+EK+ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 952 ----------EREFEKMKEDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 991



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1376 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1435

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1436 DVLMEAAAHGESDPMKG 1452



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPKFARP+WM+ TVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 230 EECFILGMDPKFARPEWMICTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 279



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 514  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 556


>gi|119610589|gb|EAW90183.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
            CRA_c [Homo sapiens]
          Length = 1549

 Score =  630 bits (1625), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 602  VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 661

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 662  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 714

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 715  --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 758

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 759  NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 818

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 819  GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 878

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 879  GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 938

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 939  NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 998

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 999  NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1058

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1059 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1088



 Score =  614 bits (1584), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 138 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 197

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 198 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 257

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 258 WLLIEG----------------------------------------------HTIGIGDS 271

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 272 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 331

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 332 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 391

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 392 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 451

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 452 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 511

Query: 494 NV 495
            +
Sbjct: 512 TL 513



 Score =  252 bits (643), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 822  LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 879

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 880  IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 939

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 940  DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 999

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1000 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1059

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP     +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MT
Sbjct: 1060 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1119

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1120 PGAAGFSPSAASD 1132



 Score =  213 bits (541), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 745  LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 804

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 805  LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 836

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 837  RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 868



 Score =  160 bits (405), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 352  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 411

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 412  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 462



 Score =  155 bits (391), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 437 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 496

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 497 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 532

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 533 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 571



 Score =  132 bits (333), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 956  ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1015

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1016 DVLMEAAAHGESDPMKG 1032



 Score = 69.7 bits (169), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 94   IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 136


>gi|219879763|gb|AAR14978.2| RNA polymerase II largest subunit [Libinia emarginata]
          Length = 445

 Score =  630 bits (1625), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 303/418 (72%), Positives = 333/418 (79%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           + +MMN+LMFLP WDG+MPQP I+KP+PLWTGKQ+F+LIIPGN+N+ +TH+ HPDDED G
Sbjct: 17  KSEMMNLLMFLPTWDGRMPQPAIIKPRPLWTGKQLFTLIIPGNINLVKTHAAHPDDEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LG SSGS++H+ ++ELGHE  GRFYGNIQTVV
Sbjct: 77  PYKWISPGDTKVLVEHGELVMGILCKKTLGASSGSMMHLAWMELGHETAGRFYGNIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 137 NNWLLLEG----------------------------------------------HSIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTI+DP TY  IQ  I+KAKEDVI+VI KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 151 DTISDPNTYRVIQDTIRKAKEDVIDVIHKAHNDELEPTPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TV NSV Q+IQL YGEDG  GE VE Q       S+ +FE  Y FD  NER
Sbjct: 331 VMVNYDGTVXNSVSQVIQLXYGEDGXAGEFVEFQXXPXXKXSNXRFEXNYXFDVXNER 388



 Score =  167 bits (424), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 86/102 (84%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD    N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVXNSV 343



 Score =  133 bits (335), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 86/161 (53%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TV NSV Q+IQL YGEDG  GE VE Q       S+ +FE
Sbjct: 318 GYIQRRLIKAMESVMVNYDGTVXNSVSQVIQLXYGEDGXAGEFVEFQXXPXXKXSNXRFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             Y FD  NER LRR+  EBV+R  +GS   I                            
Sbjct: 378 XNYXFDVXNERYLRRLXXEBVVRXXJGSPXAI---------------------------- 409

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                    LE EW KL EDR  LR+ F  G++ VVLPCNL
Sbjct: 410 -------XXLEXEWXKLXEDRXXLRQXFXKGDTKVVLPCNL 443


>gi|38232279|gb|AAR14975.1| RNA polymerase II largest subunit [Lepas anserifera]
          Length = 445

 Score =  630 bits (1625), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 312/456 (68%), Positives = 353/456 (77%), Gaps = 56/456 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +E+MMN+LMFLP WDGK+P P ILKP+P+WTGKQ+FSLIIPGNVNM RTHSTHPDDEDSG
Sbjct: 17  KEEMMNMLMFLPTWDGKIPVPAILKPRPMWTGKQLFSLIIPGNVNMIRTHSTHPDDEDSG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WIS GDTKV+V++G L+MGILCKKSLG S+GSLLHIC+LELGHE+ G FY +IQ+VV
Sbjct: 77  PYKWISVGDTKVLVDNGELIMGILCKKSLGASAGSLLHICWLELGHEIAGHFYHDIQSVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL EG                                              HSIGIG
Sbjct: 137 NAWLLYEG----------------------------------------------HSIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTI+DP TY +IQ  I+KAK DVI+VI+KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 151 DTISDPDTYTDIQNTIRKAKGDVIQVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SAK SL EYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH+
Sbjct: 211 KTGASAKNSLKEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHY 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTP+EF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV+YD TVRNSV QL+QLRYGEDGL GE VE Q + T+ LS   F  +Y+F+ +NER  
Sbjct: 331 VMVNYDGTVRNSVSQLVQLRYGEDGLAGEFVEFQGLSTIKLSDAAFRRRYKFETTNER-- 388

Query: 492 LRNVSSLRRVVNS---KPLLIGCWKLTSVEKEMNTV 524
                 LRRV      + L+     + ++EKE +T+
Sbjct: 389 -----HLRRVFQEDIVRDLMGSGDMIMALEKEWDTL 419



 Score =  167 bits (423), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 86/161 (53%), Positives = 103/161 (63%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSV QL+QLRYGEDGL GE VE Q + T+ LS   F 
Sbjct: 318 GYIQRRLIKAMESVMVNYDGTVRNSVSQLVQLRYGEDGLAGEFVEFQGLSTIKLSDAAFR 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +Y+F+ +NER LRR+F ED++R+LMGSGD+I  LE                        
Sbjct: 378 RRYKFETTNERHLRRVFQEDIVRDLMGSGDMIMALE------------------------ 413

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                      KEW+ L +DRE LR+IF +GES VVLPCNL
Sbjct: 414 -----------KEWDTLSKDRETLRQIFPTGESRVVLPCNL 443



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPH+IKDDYGPESRGFVENSYLAGLTP+EF+FHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHYIKDDYGPESRGFVENSYLAGLTPTEFYFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 343


>gi|31127036|gb|AAF26656.2|AF139006_1 RNA polymerase II largest subunit [Scolopendra polymorpha]
          Length = 734

 Score =  629 bits (1623), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 314/456 (68%), Positives = 353/456 (77%), Gaps = 56/456 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMMN+LMFLPIWDGKMP P ILKPKPLWTGKQ+FSLIIPG VN+ RTH THPDDED  
Sbjct: 208 KDQMMNLLMFLPIWDGKMPMPAILKPKPLWTGKQLFSLIIPGAVNVIRTHYTHPDDEDDS 267

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+ GILCKK+LGTS+GSLLHI  LELG E+ G FY +IQ V+
Sbjct: 268 PYKWISPGDTKVLVEHGKLISGILCKKTLGTSAGSLLHIVMLELGWEIAGTFYWHIQMVI 327

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              H+IGIG
Sbjct: 328 NNWLLLEG----------------------------------------------HTIGIG 341

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY++IQ +IKKAK DVI+VI+KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 342 DTIADPQTYIDIQNSIKKAKHDVIDVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARD 401

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+EYNN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 402 KTGSSAQKSLSEYNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 461

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 462 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 521

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           +M+ YD TVRNSVGQLIQLRYGEDGL G AVE Q + T+  S+K FE K++FD SNER  
Sbjct: 522 IMITYDGTVRNSVGQLIQLRYGEDGLDGGAVEFQTLPTLKPSNKAFEKKFKFDISNER-- 579

Query: 492 LRNVSSLRRVVNS---KPLLIGCWKLTSVEKEMNTV 524
                 L+++ N    K L+     +  +EKE  T+
Sbjct: 580 -----QLKKIFNEDIVKELMGSANIVGELEKEWETL 610



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 110/170 (64%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMES+M+ YD TVRNSVGQLIQLRYGEDGL G AVE Q + T+  S+K FE
Sbjct: 509 GYIQRRLIKAMESIMITYDGTVRNSVGQLIQLRYGEDGLDGGAVEFQTLPTLKPSNKAFE 568

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD SNERQL++IFNED+++ELMGS +++ ELEKE                      
Sbjct: 569 KKFKFDISNERQLKKIFNEDIVKELMGSANIVGELEKE---------------------- 606

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE L  DRE LR++F  G+S VVLPCNL  +I+  Q+
Sbjct: 607 -------------WETLKRDRETLRQVFPKGDSKVVLPCNLPRMIWNAQK 643



 Score =  169 bits (427), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/173 (53%), Positives = 112/173 (64%), Gaps = 11/173 (6%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 433  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 492

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   +  I YD   +N+V     + + + Y     D
Sbjct: 493  GGREGLIDTAVKTAETGYIQRRLIKAMESIMITYDGTVRNSV----GQLIQLRYGEDGLD 548

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLV 1181
               +    L       +  +KK   +  +E+        L  IFN+D  ++L+
Sbjct: 549  GGAVEFQTLPTLKPSNKAFEKKFKFDISNER-------QLKKIFNEDIVKELM 594



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/59 (81%), Positives = 52/59 (88%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V GED LS+ ANENATLLF CL+RSTLCTK VAE +RLSSEAFEWL+GEIE RFQQAQV
Sbjct: 674  VQGEDPLSRMANENATLLFDCLLRSTLCTKRVAEEFRLSSEAFEWLLGEIETRFQQAQV 732



 Score = 77.0 bits (188), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 40/43 (93%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +E + + PRQIITPQ+NRPVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 166  IEELAIVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLEK 208


>gi|126309152|ref|XP_001364837.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
            [Monodelphis domestica]
          Length = 1970

 Score =  629 bits (1623), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 319/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V GED LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGEDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  610 bits (1573), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 293/422 (69%), Positives = 337/422 (79%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLI+PG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH+    FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  253 bits (645), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 149/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP     +G  GP GMFFGSA +P   MSP MTPW Q +TPAY A   S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMT 1540

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  161 bits (407), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 96/209 (45%), Positives = 123/209 (58%), Gaps = 18/209 (8%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV--------- 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++         
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYG 892

Query: 1111 ----IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKI-NAGFG 1165
                  E  EF N+    P     +      R +   +R   + L  E + + + NA   
Sbjct: 893  EDGLAGESVEFQNLATLKPS---NKAFEKKFRFDYTNERALRRTLQEELVKDVLSNAHIQ 949

Query: 1166 DDLNCIFNDDNAEKLVLRIRIMNSDDSKM 1194
            ++L   F     ++ VLR+ I  + DSK+
Sbjct: 950  NELEREFERMREDREVLRV-IFPTGDSKV 977



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   E+++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEELVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|395533542|ref|XP_003768816.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sarcophilus
            harrisii]
          Length = 1921

 Score =  629 bits (1623), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 319/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V GED LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGEDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  610 bits (1572), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 293/422 (69%), Positives = 337/422 (79%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLI+PG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH+    FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  253 bits (645), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 149/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP     +G  GP GMFFGSA +P   MSP MTPW Q +TPAY A   S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMT 1540

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  161 bits (407), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 96/209 (45%), Positives = 123/209 (58%), Gaps = 18/209 (8%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV--------- 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++         
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYG 892

Query: 1111 ----IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKI-NAGFG 1165
                  E  EF N+    P     +      R +   +R   + L  E + + + NA   
Sbjct: 893  EDGLAGESVEFQNLATLKPS---NKAFEKKFRFDYTNERALRRTLQEELVKDVLSNAHIQ 949

Query: 1166 DDLNCIFNDDNAEKLVLRIRIMNSDDSKM 1194
            ++L   F     ++ VLR+ I  + DSK+
Sbjct: 950  NELEREFERMREDREVLRV-IFPTGDSKV 977



 Score =  152 bits (383), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   E+++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEELVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|395836506|ref|XP_003791195.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Otolemur
            garnettii]
          Length = 1970

 Score =  629 bits (1622), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 382/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP    ++G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPVLGAAGPTGMFFGSAPSP 1509



 Score =  611 bits (1576), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  252 bits (644), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 199/313 (63%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP    ++G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MT
Sbjct: 1481 KYGMEIPTNIPVLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (404), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  153 bits (386), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFEQMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|31127032|gb|AAF26647.2|AF138997_1 RNA polymerase II largest subunit [Cypridopsis vidua]
          Length = 624

 Score =  629 bits (1622), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 307/418 (73%), Positives = 336/418 (80%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++Q+M++LM LP WDG+MP P ILKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPDDED G
Sbjct: 196 KDQIMDLLMHLPRWDGRMPVPAILKPKPLWTGKQLFSLIIPGNVNLVRTHSTHPDDEDDG 255

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++EHG L+MGILCK++LG S+GSLLHIC+LELGHE+CG FYG IQTV+
Sbjct: 256 PYKWISPGDTKVLIEHGQLIMGILCKRTLGASAGSLLHICWLELGHEICGLFYGQIQTVI 315

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL+EG                                              HSIGIG
Sbjct: 316 NNWLLIEG----------------------------------------------HSIGIG 329

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD QTYLEIQ  I+KAKEDV +VIQKAHN +LEPTPGNTLRQTFEN VNRILNDARD
Sbjct: 330 DTIADTQTYLEIQTTIRKAKEDVNDVIQKAHNDELEPTPGNTLRQTFENMVNRILNDARD 389

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 390 KTGSSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 449

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IK    PESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 450 IKXXXXPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 509

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           V V YD T+RNSV QLIQLRYGEDGL  E VE Q + TV  S+  FE K++FDP+NER
Sbjct: 510 VTVGYDGTIRNSVSQLIQLRYGEDGLAAEFVEFQSLPTVKPSNVAFERKFKFDPTNER 567



 Score =  159 bits (403), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/161 (50%), Positives = 102/161 (63%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESV V YD T+RNSV QLIQLRYGEDGL  E VE Q + TV  S+  FE
Sbjct: 497 GYIQRRLIKAMESVTVGYDGTIRNSVSQLIQLRYGEDGLAAEFVEFQSLPTVKPSNVAFE 556

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRR++ E++++E+M SG++I  LE+E                      
Sbjct: 557 RKFKFDPTNERYLRRVYREEIVKEIMSSGEIIGGLEQE---------------------- 594

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                        WE+LC DREALR+IF +GE+ VVLPC L
Sbjct: 595 -------------WEQLCRDREALRKIFPTGENKVVLPCKL 622



 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 83/102 (81%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIK    PESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 421  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKXXXXPESRGFVENSYLAGLTPSEFYFHAM 480

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 481  GGREGLIDTAVKTAETGYIQRRLIKAMESVTVGYDGTIRNSV 522



 Score = 77.0 bits (188), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 40/43 (93%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +EN+H+TPR +ITPQ N+PVMGIVQDTL AVRKMTKRDVFL+K
Sbjct: 154  IENLHLTPRMVITPQANKPVMGIVQDTLCAVRKMTKRDVFLEK 196


>gi|31127003|gb|AAF26621.2|AF138971_1 RNA polymerase II largest subunit [Semibalanus balanoides]
          Length = 624

 Score =  629 bits (1622), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 306/430 (71%), Positives = 342/430 (79%), Gaps = 53/430 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +E+MMN+LMFLP WDGK+P P I+KP+PLWTGKQ+FSLIIPGNVNM RTHSTHPDDEDSG
Sbjct: 196 KEEMMNMLMFLPTWDGKIPVPAIIKPRPLWTGKQLFSLIIPGNVNMVRTHSTHPDDEDSG 255

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+W+SPGDTKV+V++G L+MGILCKKSLG S+GSLLHIC+LELGH++ G FY +IQ+VV
Sbjct: 256 PYKWVSPGDTKVLVDNGELIMGILCKKSLGASAGSLLHICWLELGHDIAGHFYHDIQSVV 315

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL EG                                              HSIGIG
Sbjct: 316 NAWLLYEG----------------------------------------------HSIGIG 329

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTI+DP TY +IQ  I+KAKEDVI+VI+KAHN +LEPTPGNTLRQTFEN VNRILNDARD
Sbjct: 330 DTISDPDTYSDIQNTIRKAKEDVIQVIEKAHNDELEPTPGNTLRQTFENHVNRILNDARD 389

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SAK SL EYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 390 KTGASAKNSLGEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 449

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTP+EF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 450 IKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 509

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV+YD T+RNSV QL+QLRYGEDGL GE VE Q + T+ LS   F  K++F+ +NER  
Sbjct: 510 VMVNYDGTLRNSVAQLVQLRYGEDGLAGEFVEFQSLPTIKLSDAAFRRKFKFETTNER-- 567

Query: 492 LRNVSSLRRV 501
                 LRRV
Sbjct: 568 -----QLRRV 572



 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/161 (52%), Positives = 104/161 (64%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD T+RNSV QL+QLRYGEDGL GE VE Q + T+ LS   F 
Sbjct: 497 GYIQRRLIKAMESVMVNYDGTLRNSVAQLVQLRYGEDGLAGEFVEFQSLPTIKLSDAAFR 556

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++F+ +NERQLRR+F ED++R+LMGSG++I ELE                        
Sbjct: 557 RKFKFETTNERQLRRVFQEDIVRDLMGSGEIIGELE------------------------ 592

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                      +EWE L  DR+ LR+IF +GES VVLPCNL
Sbjct: 593 -----------REWETLSRDRQELRQIFPTGESRVVLPCNL 622



 Score =  166 bits (421), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP+EF+FHAM
Sbjct: 421  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAM 480

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 481  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTLRNSV 522



 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/43 (83%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +EN+HVTPR I+TPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 154  IENMHVTPRMIVTPQSNKPVMGIVQDTLTAVRKMTKRDVFLEK 196


>gi|31127028|gb|AAF26643.2|AF138993_1 RNA polymerase II largest subunit [Nipponopsalis abei]
          Length = 445

 Score =  629 bits (1621), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 310/450 (68%), Positives = 350/450 (77%), Gaps = 56/450 (12%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           Q+MNILMFLPIWDGK+P P ILKPKPLWTGKQVFSLIIPGNVN+ R HSTHPD+ED GPY
Sbjct: 19  QIMNILMFLPIWDGKVPMPAILKPKPLWTGKQVFSLIIPGNVNLIRKHSTHPDEEDDGPY 78

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           ++ISPGDTKV++E G L+ GI+CK ++G+SSGSL+HI F ELGHEV G FYG+IQTVVNN
Sbjct: 79  KYISPGDTKVLIEAGELISGIVCKNTVGSSSGSLMHIVFAELGHEVAGAFYGHIQTVVNN 138

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLLLEG                                              H+IGIGDT
Sbjct: 139 WLLLEG----------------------------------------------HTIGIGDT 152

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD QTY++IQ  I+KAK+DVI+VI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 153 IADQQTYIDIQATIRKAKQDVIDVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARDKT 212

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK
Sbjct: 213 GASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 272

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM
Sbjct: 273 DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 332

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD T+RNS GQ+IQLRYGEDGL G AVEHQ + T+  S+K FE K++FD SNER    
Sbjct: 333 VTYDGTIRNSTGQVIQLRYGEDGLDGVAVEHQAMPTLKPSNKAFEKKFKFDISNER---- 388

Query: 494 NVSSLRRVVNS---KPLLIGCWKLTSVEKE 520
               LRR+      + L      L+ +EKE
Sbjct: 389 ---HLRRIFTEDVVRELQGSASALSELEKE 415



 Score =  169 bits (427), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/161 (55%), Positives = 103/161 (63%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD T+RNS GQ+IQLRYGEDGL G AVEHQ + T+  S+K FE
Sbjct: 318 GYIQRRLIKAMESVMVTYDGTIRNSTGQVIQLRYGEDGLDGVAVEHQAMPTLKPSNKAFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD SNER LRRIF EDV+REL GS   +SELEKE                      
Sbjct: 378 KKFKFDISNERHLRRIFTEDVVRELQGSASALSELEKE---------------------- 415

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                        WE+L +DRE LR++F  G+S VVLPCNL
Sbjct: 416 -------------WERLKKDREMLRQVFPMGDSKVVLPCNL 443



 Score =  167 bits (423), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 78/101 (77%), Positives = 86/101 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTIRNS 342


>gi|296201388|ref|XP_002748007.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
            [Callithrix jacchus]
          Length = 1937

 Score =  629 bits (1621), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 990  VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1049

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1050 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1102

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1103 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1146

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1147 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1206

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1207 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1266

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1267 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1326

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1327 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1386

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1387 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1446

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1447 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1476



 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 526 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 585

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 586 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 645

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 646 WLLIEG----------------------------------------------HTIGIGDS 659

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 660 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 719

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 720 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 779

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 780 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 839

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 840 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 899

Query: 494 NV 495
            +
Sbjct: 900 TL 901



 Score =  251 bits (642), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1210 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1267

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1268 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1327

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1328 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1387

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1388 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1447

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP     +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MT
Sbjct: 1448 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1507

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1508 PGAAGFSPSAASD 1520



 Score =  212 bits (540), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1133 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1192

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1193 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1224

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1225 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1256



 Score =  160 bits (405), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 740  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 799

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 800  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 850



 Score =  153 bits (387), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 825 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 884

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 885 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 920

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 921 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 959



 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1344 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1403

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1404 DVLMEAAAHGESDPMKG 1420



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 198 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 247



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 482  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 524


>gi|109488292|ref|XP_343923.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
            [Rattus norvegicus]
 gi|109491096|ref|XP_001079162.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
            [Rattus norvegicus]
          Length = 1970

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 295/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH+V   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  251 bits (641), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP     +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553



 Score =  212 bits (540), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  153 bits (387), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|395748505|ref|XP_002827010.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1 [Pongo abelii]
          Length = 1967

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  611 bits (1576), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  251 bits (641), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP     +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553



 Score =  212 bits (540), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|301778185|ref|XP_002924473.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Ailuropoda melanoleuca]
          Length = 1970

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  611 bits (1575), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 293/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP +LKP+PLWTGKQ+FSLI+PG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAVLKPRPLWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH+V   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  251 bits (641), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP     +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|431894008|gb|ELK03814.1| DNA-directed RNA polymerase II subunit RPB1 [Pteropus alecto]
          Length = 1975

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1028 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1087

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1088 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1140

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1141 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1184

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1185 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1244

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1245 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1304

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1305 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1364

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1365 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1424

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1425 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1484

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1485 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1514



 Score =  611 bits (1576), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 564 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 623

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 624 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 683

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 684 WLLIEG----------------------------------------------HTIGIGDS 697

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 698 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 757

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 758 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 817

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 818 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 877

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 878 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 937

Query: 494 NV 495
            +
Sbjct: 938 TL 939



 Score =  251 bits (641), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1248 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1305

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1306 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1365

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1366 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1425

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1426 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1485

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP     +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MT
Sbjct: 1486 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1545

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1546 PGAAGFSPSAASD 1558



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1171 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1230

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1231 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1262

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1263 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1294



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 778  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 837

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 838  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 888



 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 863 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 922

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 923 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 958

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 959 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 997



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1382 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1441

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1442 DVLMEAAAHGESDPMKG 1458



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 520  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 562


>gi|68370162|ref|XP_682682.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
            [Danio rerio]
          Length = 1972

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 319/512 (62%), Positives = 382/512 (74%), Gaps = 53/512 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+DQLS+QA ENATLLF   +RSTLC+K + E +RLS+EAF+WL+GEIE +F Q+   
Sbjct: 1020 VNGDDQLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH 1079

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1080 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKRPK----- 1132

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  A + AE    ++       L +VTANTAIYYDP
Sbjct: 1133 --------TPSLTVF--------LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1176

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQNTV+ EDQE+VNVYYEMPDFD TRISPWLLRIELDRK MTD+KLTME I+EKINAGF
Sbjct: 1177 NPQNTVVTEDQEWVNVYYEMPDFDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGF 1236

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1237 GDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQ 1296

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1297 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1356

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHGI
Sbjct: 1357 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGI 1416

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+A++H E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1417 NRQDTGPLMKCSFEETVDVLMEASSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1476

Query: 1405 CKDGIEIP--LATGMMGGPAGMFFGSAATPSS 1434
            CK G+EIP  +    + GP GMFFGSA +P S
Sbjct: 1477 CKYGMEIPTNIPGISVAGPTGMFFGSAPSPMS 1508



 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 303/451 (67%), Positives = 349/451 (77%), Gaps = 56/451 (12%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPD+EDSGPY
Sbjct: 556 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINAIRTHSTHPDEEDSGPY 615

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKV+VE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTVVNN
Sbjct: 616 KNISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNN 675

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              HSIGIGD+
Sbjct: 676 WLLIEG----------------------------------------------HSIGIGDS 689

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD  TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 690 IADKATYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 749

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVVAGSKGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 750 GSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 809

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 810 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 869

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GEAVE Q + T+  SHK FE K++FD +NER    
Sbjct: 870 VKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNMATLKPSHKAFEKKFKFDYANER---- 925

Query: 494 NVSSLRRVVNS---KPLLIGCWKLTSVEKEM 521
              +LRR +     K ++      +S+E+E 
Sbjct: 926 ---ALRRTLQEDVVKDVMTNAHVQSSLEREF 953



 Score =  248 bits (634), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/186 (65%), Positives = 146/186 (78%), Gaps = 5/186 (2%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHGINRQDTG L
Sbjct: 1365 VLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPL 1424

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
            M+CSFEETVDVLM+A++H E+DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G+EIP
Sbjct: 1425 MKCSFEETVDVLMEASSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 1484

Query: 896  --LATGMMGGPAGMFFGSAATP-SSMSPQMTPW-AQSTPAYNALM-SPGAAMTPGGPGFS 950
              +    + GP GMFFGSA +P S MSP MTPW   +TPAY A   S G+ MTPG  GFS
Sbjct: 1485 TNIPGISVAGPTGMFFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFS 1544

Query: 951  PSVAGE 956
            PS A +
Sbjct: 1545 PSAASD 1550



 Score =  213 bits (541), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 105/152 (69%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQNTV+ EDQE+VNVYYEMPDFD TRISPWLLRIELDRK MTD+K
Sbjct: 1163 LRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDFDVTRISPWLLRIELDRKHMTDRK 1222

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1223 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1254

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++K Q++E+ VDKM+DD+FLRCIE
Sbjct: 1255 RIRIMNSDENKFQEDEEVVDKMDDDVFLRCIE 1286



 Score =  161 bits (407), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 89/113 (78%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 768  VAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAG 827

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            LTP+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 828  LTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 880



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 105/170 (61%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GEAVE Q + T+  SHK FE
Sbjct: 855 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNMATLKPSHKAFE 914

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD +NER LRR   EDV++++M +  V S LE                        
Sbjct: 915 KKFKFDYANERALRRTLQEDVVKDVMTNAHVQSSLE------------------------ 950

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+EK+ EDRE LR IF +G+S VVLPCNL  +I+  Q+
Sbjct: 951 -----------REFEKMREDREILRAIFPTGDSKVVLPCNLARMIWNAQK 989



 Score =  130 bits (327), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHGINRQDTG LM+CSFEETV
Sbjct: 1374 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETV 1433

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+A++H E+DPM+G
Sbjct: 1434 DVLMEASSHGESDPMKG 1450



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 45/50 (90%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE IILGMDPK+ARP+WM+VTVLPVPPL+VRPAVVM GSARNQ+ + + L
Sbjct: 228 EEDIILGMDPKYARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKL 277



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 512  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 554


>gi|2443334|dbj|BAA22376.1| RNA polymerase II largest subunit [Cricetulus griseus]
          Length = 1970

 Score =  628 bits (1619), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  611 bits (1576), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  251 bits (641), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP     +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|301628367|ref|XP_002943327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like, partial
            [Xenopus (Silurana) tropicalis]
          Length = 1946

 Score =  628 bits (1619), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ + E +RLS EAF+WL+GEIE++F QA   
Sbjct: 999  VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGEIESKFNQAVAH 1058

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1059 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1111

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1112 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1155

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQNTV+ EDQE+VNVYYEMPDFD TRISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1156 NPQNTVVSEDQEWVNVYYEMPDFDVTRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1215

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1216 GDDLNCIFNDDNAEKLVLRIRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1275

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1276 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1335

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1336 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1395

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1396 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1455

Query: 1405 CKDGIEIPLATGMM--GGPAGMFFGSAATP 1432
            CK G+EIP     +  GGP GMFFG+A +P
Sbjct: 1456 CKFGMEIPTNIPGLGAGGPTGMFFGTAPSP 1485



 Score =  607 bits (1565), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 291/422 (68%), Positives = 336/422 (79%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLI+PG++N  RTHSTHPDDEDSGPY
Sbjct: 535 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPY 594

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKV+VE+G L+MGILCKKSLGTS+GSL+HI +LE+GH+    FY NIQTV+NN
Sbjct: 595 KHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINN 654

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 655 WLLIEG----------------------------------------------HTIGIGDS 668

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 669 IADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 728

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 729 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 788

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 789 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 848

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE VE Q + T+  S+K FE K++FD +NER   R
Sbjct: 849 VKYDATVRNSINQVVQLRYGEDGLAGEGVEFQNLATLKPSNKAFEKKFKFDYANERALRR 908

Query: 494 NV 495
            +
Sbjct: 909 TL 910



 Score =  251 bits (641), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 122/186 (65%), Positives = 146/186 (78%), Gaps = 5/186 (2%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG L
Sbjct: 1344 VLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPL 1403

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
            M+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G+EIP
Sbjct: 1404 MKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKFGMEIP 1463

Query: 896  LATGMM--GGPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMTPGGPGFS 950
                 +  GGP GMFFG+A +P   MSP MTPW Q +TPAY A   S G+ MTPG  GFS
Sbjct: 1464 TNIPGLGAGGPTGMFFGTAPSPMGGMSPAMTPWNQGATPAYGAWSPSIGSGMTPGAAGFS 1523

Query: 951  PSVAGE 956
            PS A +
Sbjct: 1524 PSAASD 1529



 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/152 (69%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQNTV+ EDQE+VNVYYEMPDFD TRISPWLLR+ELDRK MTD+K
Sbjct: 1142 LRKVTANTAIYYDPNPQNTVVSEDQEWVNVYYEMPDFDVTRISPWLLRVELDRKHMTDRK 1201

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1202 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1233

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNS+++KMQDEE+ VDKM+DD+FLRCIE
Sbjct: 1234 RIRIMNSEENKMQDEEEVVDKMDDDVFLRCIE 1265



 Score =  160 bits (404), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 749  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 808

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 809  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 859



 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/170 (48%), Positives = 104/170 (61%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE VE Q + T+  S+K FE
Sbjct: 834 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEGVEFQNLATLKPSNKAFE 893

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD +NER LRR   EDV++E++    V +EL                         
Sbjct: 894 KKFKFDYANERALRRTLQEDVVKEILSDAHVQNEL------------------------- 928

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     EKE+EK+ EDRE LR IF +G+S VVLPCNL  +I+  Q+
Sbjct: 929 ----------EKEFEKMKEDREVLRVIFPTGDSKVVLPCNLQRMIWNAQK 968



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1353 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1412

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1413 DVLMEAAAHGESDPMKG 1429



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDP+FARP+W++VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 207 EECFILGMDPRFARPEWLIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 256



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 491  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 533


>gi|2145091|gb|AAB58418.1| RNA polymerase II largest subunit [Mus musculus]
          Length = 1966

 Score =  628 bits (1619), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  611 bits (1576), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  251 bits (640), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP     +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (404), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|402898581|ref|XP_003912299.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Papio anubis]
          Length = 1970

 Score =  628 bits (1619), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  611 bits (1576), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  251 bits (641), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP     +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (404), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|133327|sp|P08775.3|RPB1_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
            polymerase II subunit B1; AltName: Full=DNA-directed RNA
            polymerase II subunit A; AltName: Full=DNA-directed RNA
            polymerase III largest subunit
          Length = 1970

 Score =  628 bits (1619), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  611 bits (1576), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  251 bits (640), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP     +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (404), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|281185484|sp|P24928.2|RPB1_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
            polymerase II subunit B1; AltName: Full=DNA-directed RNA
            polymerase II subunit A; AltName: Full=DNA-directed RNA
            polymerase III largest subunit; AltName:
            Full=RNA-directed RNA polymerase II subunit RPB1
          Length = 1970

 Score =  628 bits (1619), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  611 bits (1576), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  251 bits (640), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP     +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (404), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|4505939|ref|NP_000928.1| DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]
 gi|345842509|ref|NP_001230931.1| polymerase (RNA) II (DNA directed) polypeptide A [Cricetulus griseus]
 gi|332251063|ref|XP_003274666.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Nomascus
            leucogenys]
 gi|403274932|ref|XP_003929214.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Saimiri
            boliviensis boliviensis]
 gi|36124|emb|CAA45125.1| RNA polymerase II largest subunit [Homo sapiens]
 gi|2443336|dbj|BAA22377.1| RNA polymerase II largest subunit [Cricetulus griseus]
 gi|14328881|dbj|BAB60684.1| RNA polymerase II largest subunit [Cricetulus griseus]
 gi|119610587|gb|EAW90181.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
            CRA_a [Homo sapiens]
 gi|223460954|gb|AAI37232.1| Polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Homo
            sapiens]
          Length = 1970

 Score =  628 bits (1619), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  611 bits (1576), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  251 bits (640), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP     +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (404), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|344290440|ref|XP_003416946.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Loxodonta
            africana]
          Length = 1970

 Score =  627 bits (1618), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  611 bits (1575), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  248 bits (633), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 147/313 (46%), Positives = 197/313 (62%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWA-QSTPAYNALM-SPGAAMT 943
            K G+EIP     +G  GP GMFFGSA +P   +SP MTPW   +TPAY A   S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNLGATPAYGAWSPSVGSGMT 1540

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (404), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|351701567|gb|EHB04486.1| DNA-directed RNA polymerase II subunit RPB1 [Heterocephalus glaber]
 gi|417406836|gb|JAA50059.1| Putative rna polymerase i large subunit [Desmodus rotundus]
          Length = 1970

 Score =  627 bits (1618), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  611 bits (1576), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  251 bits (640), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP     +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (404), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|432105605|gb|ELK31799.1| DNA-directed RNA polymerase II subunit RPB1 [Myotis davidii]
          Length = 1970

 Score =  627 bits (1618), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  611 bits (1575), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  251 bits (640), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP     +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (404), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|329663165|ref|NP_001193242.1| DNA-directed RNA polymerase II subunit RPB1 [Bos taurus]
          Length = 1970

 Score =  627 bits (1618), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  611 bits (1575), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  251 bits (640), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP     +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (404), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|345800197|ref|XP_857844.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1 isoform 3 [Canis lupus familiaris]
          Length = 1970

 Score =  627 bits (1618), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  611 bits (1576), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 295/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH+V   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  251 bits (640), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP     +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (404), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|444722932|gb|ELW63604.1| DNA-directed RNA polymerase II subunit RPB1 [Tupaia chinensis]
          Length = 1801

 Score =  627 bits (1618), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1064 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1123

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1124 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1176

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1177 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1220

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1221 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1280

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1281 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1340

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1341 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1400

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1401 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1460

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1461 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1520

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1521 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1550



 Score =  611 bits (1575), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 600 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 659

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 660 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 719

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 720 WLLIEG----------------------------------------------HTIGIGDS 733

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 734 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 793

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 794 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 853

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 854 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 913

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 914 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 973

Query: 494 NV 495
            +
Sbjct: 974 TL 975



 Score =  250 bits (639), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 122/186 (65%), Positives = 146/186 (78%), Gaps = 5/186 (2%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG L
Sbjct: 1409 VLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPL 1468

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
            M+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G+EIP
Sbjct: 1469 MKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 1528

Query: 896  LATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMTPGGPGFS 950
                 +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MTPG  GFS
Sbjct: 1529 TNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFS 1588

Query: 951  PSVAGE 956
            PS A +
Sbjct: 1589 PSAASD 1594



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1207 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1266

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1267 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1298

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1299 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1330



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 814  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 873

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 874  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 924



 Score =  153 bits (386), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592  GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
            GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 899  GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 958

Query: 652  DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 959  KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 994

Query: 712  MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 995  -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 1033



 Score =  132 bits (331), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1418 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1477

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1478 DVLMEAAAHGESDPMKG 1494



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 556  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 598


>gi|194389262|dbj|BAG65619.1| unnamed protein product [Homo sapiens]
          Length = 1935

 Score =  627 bits (1617), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 317/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 988  VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1047

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1048 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1100

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1101 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1144

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1145 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1204

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1205 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1264

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SL++VLSE+DVDPVRT S
Sbjct: 1265 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLIRVLSEKDVDPVRTTS 1324

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1325 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1384

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1385 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1444

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1445 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1474



 Score =  611 bits (1575), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 293/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 524 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 583

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 584 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 643

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 644 WLLIEG----------------------------------------------HTIGIGDS 657

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 658 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 717

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFI+
Sbjct: 718 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIE 777

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 778 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 837

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 838 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 897

Query: 494 NV 495
            +
Sbjct: 898 TL 899



 Score =  252 bits (644), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 148/310 (47%), Positives = 197/310 (63%), Gaps = 22/310 (7%)

Query: 667  IFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISE 720
            IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  I +
Sbjct: 1211 IFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG--IEQ 1268

Query: 721  LEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNENLR 771
            + K +  L + D +    I   GE       +L  + + +I +L    +      + ++ 
Sbjct: 1269 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLIRVLSEKDVDPVRTTSNDIV 1328

Query: 772  FLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQD 831
             +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQD
Sbjct: 1329 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1388

Query: 832  TGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDG 891
            TG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G
Sbjct: 1389 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYG 1448

Query: 892  IEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMTPGG 946
            +EIP     +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MTPG 
Sbjct: 1449 MEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGA 1508

Query: 947  PGFSPSVAGE 956
             GFSPS A +
Sbjct: 1509 AGFSPSAASD 1518



 Score =  212 bits (540), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1131 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1190

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1191 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1222

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1223 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1254



 Score =  159 bits (401), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/111 (67%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFI+DDYGPESRGFVENSYLAGLT
Sbjct: 738  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIEDDYGPESRGFVENSYLAGLT 797

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 798  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 848



 Score =  154 bits (388), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 823 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 882

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 883 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 918

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 919 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 957



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1342 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1401

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1402 DVLMEAAAHGESDPMKG 1418



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 196 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 245



 Score = 69.7 bits (169), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 480  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 522


>gi|397477903|ref|XP_003846225.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1 [Pan paniscus]
          Length = 1719

 Score =  627 bits (1616), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  610 bits (1574), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  251 bits (640), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 122/186 (65%), Positives = 146/186 (78%), Gaps = 5/186 (2%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG L
Sbjct: 1368 VLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPL 1427

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
            M+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G+EIP
Sbjct: 1428 MKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 1487

Query: 896  LATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMTPGGPGFS 950
                 +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MTPG  GFS
Sbjct: 1488 TNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFS 1547

Query: 951  PSVAGE 956
            PS A +
Sbjct: 1548 PSAASD 1553



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|426383939|ref|XP_004058534.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
            [Gorilla gorilla gorilla]
          Length = 1921

 Score =  627 bits (1616), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  610 bits (1573), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  251 bits (640), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 122/186 (65%), Positives = 146/186 (78%), Gaps = 5/186 (2%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG L
Sbjct: 1368 VLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPL 1427

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
            M+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G+EIP
Sbjct: 1428 MKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 1487

Query: 896  LATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMTPGGPGFS 950
                 +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MTPG  GFS
Sbjct: 1488 TNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFS 1547

Query: 951  PSVAGE 956
            PS A +
Sbjct: 1548 PSAASD 1553



 Score =  211 bits (538), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (404), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +EL                         
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNEL------------------------- 952

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     E+E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 953 ----------EREFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|380793277|gb|AFE68514.1| DNA-directed RNA polymerase II subunit RPB1, partial [Macaca mulatta]
          Length = 1658

 Score =  626 bits (1615), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 322/534 (60%), Positives = 386/534 (72%), Gaps = 66/534 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP-------------SSIPGPPAWYP 1443
            CK G+EIP     +G  GP GMFFGSA +P              + P   AW P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSP 1533



 Score =  610 bits (1574), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  251 bits (640), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 122/186 (65%), Positives = 146/186 (78%), Gaps = 5/186 (2%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG L
Sbjct: 1368 VLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPL 1427

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
            M+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G+EIP
Sbjct: 1428 MKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 1487

Query: 896  LATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMTPGGPGFS 950
                 +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MTPG  GFS
Sbjct: 1488 TNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFS 1547

Query: 951  PSVAGE 956
            PS A +
Sbjct: 1548 PSAASD 1553



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (405), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +EL                         
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNEL------------------------- 952

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     E+E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 953 ----------EREFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  131 bits (330), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|426238812|ref|XP_004013338.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Ovis aries]
          Length = 1897

 Score =  626 bits (1615), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  610 bits (1573), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  250 bits (639), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 122/186 (65%), Positives = 146/186 (78%), Gaps = 5/186 (2%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG L
Sbjct: 1368 VLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPL 1427

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
            M+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G+EIP
Sbjct: 1428 MKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 1487

Query: 896  LATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMTPGGPGFS 950
                 +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MTPG  GFS
Sbjct: 1488 TNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFS 1547

Query: 951  PSVAGE 956
            PS A +
Sbjct: 1548 PSAASD 1553



 Score =  211 bits (538), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (404), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +EL                         
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNEL------------------------- 952

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     E+E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 953 ----------EREFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|194217622|ref|XP_001918406.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Equus caballus]
          Length = 1834

 Score =  626 bits (1614), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  610 bits (1573), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  248 bits (634), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/186 (65%), Positives = 145/186 (77%), Gaps = 5/186 (2%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG L
Sbjct: 1368 VLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPL 1427

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
            M+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G+EIP
Sbjct: 1428 MKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 1487

Query: 896  LATGMMG--GPAGMFFGSAATP-SSMSPQMTPW-AQSTPAYNALM-SPGAAMTPGGPGFS 950
                 +G  GP GMFFGSA +P   +SP MTPW   +TPAY A   S G+ MTPG  GFS
Sbjct: 1488 TNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNVGATPAYGAWSPSVGSGMTPGAAGFS 1547

Query: 951  PSVAGE 956
            PS A +
Sbjct: 1548 PSAASD 1553



 Score =  211 bits (538), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +EL                         
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNEL------------------------- 952

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     E+E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 953 ----------EREFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|355568192|gb|EHH24473.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca mulatta]
 gi|355753712|gb|EHH57677.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca fascicularis]
          Length = 1629

 Score =  626 bits (1614), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 322/534 (60%), Positives = 386/534 (72%), Gaps = 66/534 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1033 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1092

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1093 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1145

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1146 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1189

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1190 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1249

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1250 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1309

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1310 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1369

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1370 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1429

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1430 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1489

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP-------------SSIPGPPAWYP 1443
            CK G+EIP     +G  GP GMFFGSA +P              + P   AW P
Sbjct: 1490 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSP 1543



 Score =  610 bits (1573), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 569 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 628

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 629 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 688

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 689 WLLIEG----------------------------------------------HTIGIGDS 702

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 703 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 762

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 763 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 822

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 823 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 882

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 883 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 942

Query: 494 NV 495
            +
Sbjct: 943 TL 944



 Score =  251 bits (640), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 122/186 (65%), Positives = 146/186 (78%), Gaps = 5/186 (2%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG L
Sbjct: 1378 VLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPL 1437

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
            M+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G+EIP
Sbjct: 1438 MKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 1497

Query: 896  LATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMTPGGPGFS 950
                 +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MTPG  GFS
Sbjct: 1498 TNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFS 1557

Query: 951  PSVAGE 956
            PS A +
Sbjct: 1558 PSAASD 1563



 Score =  211 bits (538), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1176 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1235

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1236 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1267

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1268 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1299



 Score =  160 bits (405), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 783  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 842

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 843  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 893



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592  GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
            GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 868  GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 927

Query: 652  DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             K+RFD +NER LRR   ED++++++ +  + +EL                         
Sbjct: 928  KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNEL------------------------- 962

Query: 712  MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      E+E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 963  ----------EREFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 1002



 Score =  131 bits (329), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1387 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1446

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1447 DVLMEAAAHGESDPMKG 1463



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 525  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 567


>gi|410979885|ref|XP_003996311.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Felis catus]
          Length = 1817

 Score =  626 bits (1614), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  610 bits (1572), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  250 bits (639), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 122/186 (65%), Positives = 146/186 (78%), Gaps = 5/186 (2%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG L
Sbjct: 1368 VLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPL 1427

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
            M+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G+EIP
Sbjct: 1428 MKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 1487

Query: 896  LATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMTPGGPGFS 950
                 +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MTPG  GFS
Sbjct: 1488 TNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFS 1547

Query: 951  PSVAGE 956
            PS A +
Sbjct: 1548 PSAASD 1553



 Score =  211 bits (538), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (404), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +EL                         
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNEL------------------------- 952

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     E+E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 953 ----------EREFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  131 bits (330), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 42/50 (84%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P+FARP+WM+VTVLPVPPLSVRPAVVM GSA  Q+ + + L
Sbjct: 231 EECFVLGMEPRFARPEWMIVTVLPVPPLSVRPAVVMQGSAXXQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|332847192|ref|XP_511300.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Pan
            troglodytes]
          Length = 1907

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 317/510 (62%), Positives = 379/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KM  EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  251 bits (641), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 122/186 (65%), Positives = 146/186 (78%), Gaps = 5/186 (2%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG L
Sbjct: 1368 VLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPL 1427

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
            M+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G+EIP
Sbjct: 1428 MKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 1487

Query: 896  LATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMTPGGPGFS 950
                 +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MTPG  GFS
Sbjct: 1488 TNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFS 1547

Query: 951  PSVAGE 956
            PS A +
Sbjct: 1548 PSAASD 1553



 Score =  209 bits (531), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/152 (67%), Positives = 115/152 (75%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KM  EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMXQEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (405), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.7 bits (169), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|115910670|ref|XP_788781.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform 3
            [Strongylocentrotus purpuratus]
          Length = 1921

 Score =  624 bits (1610), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 321/501 (64%), Positives = 376/501 (75%), Gaps = 24/501 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V GED +S+QA ENAT L  CL+RSTL +  VA+ ++LS E+FEWL+GEIE RF Q+  +
Sbjct: 1023 VKGEDAISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAM 1082

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-----VENSYLAGLTPSEFFF 1065
            A   VG    +    P         HF        + G      + N      TPS   F
Sbjct: 1083 AGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKKPRTPSLTCF 1142

Query: 1066 HAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L+  A + AE    ++       L +VTANTAIYYDP+PQ TVI EDQ++VN
Sbjct: 1143 --------LLGKAARDAERAKDILCRLEHTTLRKVTANTAIYYDPEPQGTVIAEDQDWVN 1194

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            +YY MPDFDPTRISPWLLR+ELDRKRMTD+KL+ME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1195 LYYMMPDFDPTRISPWLLRVELDRKRMTDRKLSMEQIAEKINAGFGDDLNCIFNDDNAEK 1254

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQGIE I KVYMHLPQ 
Sbjct: 1255 LVLRIRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGIEQIAKVYMHLPQV 1314

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
             +KKRIIITE GEFK IA+W+LETDGT++MKVLS+ +VDPVRTFSNDICEIFQVLGIEAV
Sbjct: 1315 ANKKRIIITEEGEFKHIAEWILETDGTAMMKVLSDPEVDPVRTFSNDICEIFQVLGIEAV 1374

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVE EMN V+ F G YVNYRHLALLCDVMTA+GHLMAITRHGINRQD GALMRCSFEE
Sbjct: 1375 RKSVETEMNHVISFDGSYVNYRHLALLCDVMTARGHLMAITRHGINRQDVGALMRCSFEE 1434

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
            TVD+L DA AH E D ++GVSENI++G+L  +GTG FDLLLDAEKCK G+EIP  +  G+
Sbjct: 1435 TVDILNDAGAHGETDHLKGVSENIMLGKLAGLGTGSFDLLLDAEKCKHGMEIPMGMGAGL 1494

Query: 1418 MGGPAGMFFGSAATPSSIPGP 1438
            +G P GM FG+  +PS    P
Sbjct: 1495 VGMP-GMLFGAMGSPSQSMSP 1514



 Score =  571 bits (1471), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 278/434 (64%), Positives = 324/434 (74%), Gaps = 53/434 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +  +MN+L+FLP WDGK+P+P ILKP+PLWTGKQ+ +L+IP NVN+ R HSTHPD ED G
Sbjct: 557 KPNVMNLLLFLPNWDGKIPKPAILKPRPLWTGKQLLTLVIPDNVNVVRFHSTHPDGEDRG 616

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+W+SPGDTKV + +G L+ GI+CKK++G S G+L HI F+E GHE+   FY  +Q +V
Sbjct: 617 PYKWLSPGDTKVYIVNGELITGIVCKKTVGASGGTLGHIIFMERGHEIAKEFYSVVQVLV 676

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 677 NNWLLLEG----------------------------------------------HSIGIG 690

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           D IAD  TY +IQ  I+KAK+DVIEVI+KAHN +L PTPGN+LRQTFENQVNR+LN+ARD
Sbjct: 691 DCIADASTYDDIQNTIRKAKQDVIEVIEKAHNDELTPTPGNSLRQTFENQVNRLLNEARD 750

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSA+KSL+E+NN K MVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHF
Sbjct: 751 KTGGSAQKSLSEFNNFKTMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHF 810

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSE FFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 811 IKDDYGPESRGFVENSYLAGLTPSEMFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 870

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV YD T RNS  QL+QLRYGEDGL G ++E Q + ++  SHK FE +++FD +NE+  
Sbjct: 871 VMVRYDGTCRNSNDQLVQLRYGEDGLDGTSIEFQNLASLKPSHKAFEKRFKFDYNNEK-- 928

Query: 492 LRNVSSLRRVVNSK 505
                 LRR  N K
Sbjct: 929 -----MLRRCFNEK 937



 Score =  253 bits (646), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 128/189 (67%), Positives = 150/189 (79%), Gaps = 10/189 (5%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVE EMN V+ F G YVNYRHLALLCDVMTA+GHLMAITRHGINR
Sbjct: 1362 ICEIFQVLGIEAVRKSVETEMNHVISFDGSYVNYRHLALLCDVMTARGHLMAITRHGINR 1421

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QD GALMRCSFEETVD+L DA AH E D ++GVSENI++G+L  +GTG FDLLLDAEKCK
Sbjct: 1422 QDVGALMRCSFEETVDILNDAGAHGETDHLKGVSENIMLGKLAGLGTGSFDLLLDAEKCK 1481

Query: 890  DGIEIP--LATGMMGGPAGMFFGSAATPS-SMSPQMTPWAQ-STPAYNALMSP--GAAMT 943
             G+EIP  +  G++G P GM FG+  +PS SMSPQMTPW Q +TP + A  SP  G+ MT
Sbjct: 1482 HGMEIPMGMGAGLVGMP-GMLFGAMGSPSQSMSPQMTPWNQGATPMHGASWSPMMGSGMT 1540

Query: 944  PGGPGFSPS 952
            PGGPGFSP+
Sbjct: 1541 PGGPGFSPA 1549



 Score =  214 bits (544), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 105/152 (69%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ TVI EDQ++VN+YY MPDFDPTRISPWLLR+ELDRKRMTD+K
Sbjct: 1166 LRKVTANTAIYYDPEPQGTVIAEDQDWVNLYYMMPDFDPTRISPWLLRVELDRKRMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L+ME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LSMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++K QDEE+ VDKMEDD+FLRCIE
Sbjct: 1258 RIRIMNSDENKFQDEEEQVDKMEDDVFLRCIE 1289



 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/135 (61%), Positives = 96/135 (71%), Gaps = 4/135 (2%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 771  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAG 830

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEF 1117
            LTPSE FFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N+    + + 
Sbjct: 831  LTPSEMFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVRYDGTCRNS----NDQL 886

Query: 1118 VNVYYEMPDFDPTRI 1132
            V + Y     D T I
Sbjct: 887  VQLRYGEDGLDGTSI 901



 Score =  144 bits (362), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 102/170 (60%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD T RNS  QL+QLRYGEDGL G ++E Q + ++  SHK FE
Sbjct: 858 GYIQRRLIKAMESVMVRYDGTCRNSNDQLVQLRYGEDGLDGTSIEFQNLASLKPSHKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD +NE+ LRR FNE ++++++ +  V  ELE                        
Sbjct: 918 KRFKFDYNNEKMLRRCFNEKIVKDVVANAHVHLELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      KE+++L EDRE LR+IF  GES V LPCNL  +I+  Q+
Sbjct: 954 -----------KEYDQLKEDREVLRKIFPKGESKVALPCNLDRMIWNAQQ 992



 Score =  133 bits (335), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 66/77 (85%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVE EMN V+ F G YVNYRHLALLCDVMTA+GHLMAITRHGINRQD GALMRCSFEETV
Sbjct: 1377 SVETEMNHVISFDGSYVNYRHLALLCDVMTARGHLMAITRHGINRQDVGALMRCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            D+L DA AH E D ++G
Sbjct: 1437 DILNDAGAHGETDHLKG 1453



 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 42/50 (84%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EESI LGMDPKF RPDWM++TVLPVPPL VRPAVVM GS RNQ+ + + L
Sbjct: 231 EESIALGMDPKFTRPDWMIITVLPVPPLCVRPAVVMFGSTRNQDDLTHKL 280



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 1497 RQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPD 1543
            R +ITPQ+NRPVMGIVQD+L A+RK TKRDVF+ K      + + P+
Sbjct: 523  RNMITPQSNRPVMGIVQDSLCAIRKFTKRDVFVTKPNVMNLLLFLPN 569


>gi|390363773|ref|XP_003730447.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Strongylocentrotus purpuratus]
          Length = 1880

 Score =  622 bits (1605), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 323/511 (63%), Positives = 376/511 (73%), Gaps = 28/511 (5%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V GED +S+QA ENAT L  CL+RSTL +  VA+ ++LS E+FEWL+GEIE RF Q+  +
Sbjct: 1023 VKGEDAISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAM 1082

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-----VENSYLAGLTPSEFFF 1065
            A   VG    +    P         HF        + G      + N      TPS   F
Sbjct: 1083 AGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKKPRTPSLTCF 1142

Query: 1066 HAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L+  A + AE    ++       L +VTANTAIYYDP+PQ TVI EDQ++VN
Sbjct: 1143 --------LLGKAARDAERAKDILCRLEHTTLRKVTANTAIYYDPEPQGTVIAEDQDWVN 1194

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            +YY MPDFDPTRISPWLLR+ELDRKRMTD+KL+ME I+EKINAGFGDDLNCIFNDDNAEK
Sbjct: 1195 LYYMMPDFDPTRISPWLLRVELDRKRMTDRKLSMEQIAEKINAGFGDDLNCIFNDDNAEK 1254

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LVLRIRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQGIE I KVYMHLPQ 
Sbjct: 1255 LVLRIRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGIEQIAKVYMHLPQV 1314

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
             +KKRIIITE GEFK IA+W+LETDGT++MKVLS+ +VDPVRTFSNDICEIFQVLGIEAV
Sbjct: 1315 ANKKRIIITEEGEFKHIAEWILETDGTAMMKVLSDPEVDPVRTFSNDICEIFQVLGIEAV 1374

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
            RKSVE EMN V+ F G YVNYRHLALLCDVMTA+GHLMAITRHGINRQD GALMRCSFEE
Sbjct: 1375 RKSVETEMNHVISFDGSYVNYRHLALLCDVMTARGHLMAITRHGINRQDVGALMRCSFEE 1434

Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG 1419
            TVD+L DA AH E D ++GVSENI++G+L  +GTG FDLLLDAEKCK G+EIP+  G   
Sbjct: 1435 TVDILNDAGAHGETDHLKGVSENIMLGKLAGLGTGSFDLLLDAEKCKHGMEIPMGMGAGL 1494

Query: 1420 G----PAGMFFGSAATPSSIPGP---PAWYP 1443
            G    P G  F  A + S+   P   PAW P
Sbjct: 1495 GSGMTPGGPGFSPANSESTGFSPAYSPAWSP 1525



 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 278/431 (64%), Positives = 323/431 (74%), Gaps = 53/431 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           +MN+L+FLP WDGK+P+P ILKP+PLWTGKQ+ +L+IP NVN+ R HSTHPD ED GPY+
Sbjct: 560 VMNLLLFLPNWDGKIPKPAILKPRPLWTGKQLLTLVIPDNVNVVRFHSTHPDGEDRGPYK 619

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           W+SPGDTKV + +G L+ GI+CKK++G S G+L HI F+E GHE+   FY  +Q +VNNW
Sbjct: 620 WLSPGDTKVYIVNGELITGIVCKKTVGASGGTLGHIIFMERGHEIAKEFYSVVQVLVNNW 679

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LLLEG                                              HSIGIGD I
Sbjct: 680 LLLEG----------------------------------------------HSIGIGDCI 693

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD  TY +IQ  I+KAK+DVIEVI+KAHN +L PTPGN+LRQTFENQVNR+LN+ARDKTG
Sbjct: 694 ADASTYDDIQNTIRKAKQDVIEVIEKAHNDELTPTPGNSLRQTFENQVNRLLNEARDKTG 753

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
           GSA+KSL+E+NN K MVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHFIKD
Sbjct: 754 GSAQKSLSEFNNFKTMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKD 813

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYLAGLTPSE FFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV
Sbjct: 814 DYGPESRGFVENSYLAGLTPSEMFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 873

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLRN 494
            YD T RNS  QL+QLRYGEDGL G ++E Q + ++  SHK FE +++FD +NE+     
Sbjct: 874 RYDGTCRNSNDQLVQLRYGEDGLDGTSIEFQNLASLKPSHKAFEKRFKFDYNNEK----- 928

Query: 495 VSSLRRVVNSK 505
              LRR  N K
Sbjct: 929 --MLRRCFNEK 937



 Score =  214 bits (545), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 105/152 (69%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ TVI EDQ++VN+YY MPDFDPTRISPWLLR+ELDRKRMTD+K
Sbjct: 1166 LRKVTANTAIYYDPEPQGTVIAEDQDWVNLYYMMPDFDPTRISPWLLRVELDRKRMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L+ME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LSMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++K QDEE+ VDKMEDD+FLRCIE
Sbjct: 1258 RIRIMNSDENKFQDEEEQVDKMEDDVFLRCIE 1289



 Score =  213 bits (541), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 112/186 (60%), Positives = 132/186 (70%), Gaps = 13/186 (6%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKSVE EMN V+ F G YVNYRHLALLCDVMTA+GHLMAITRHGINR
Sbjct: 1362 ICEIFQVLGIEAVRKSVETEMNHVISFDGSYVNYRHLALLCDVMTARGHLMAITRHGINR 1421

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QD GALMRCSFEETVD+L DA AH E D ++GVSENI++G+L  +GTG FDLLLDAEKCK
Sbjct: 1422 QDVGALMRCSFEETVDILNDAGAHGETDHLKGVSENIMLGKLAGLGTGSFDLLLDAEKCK 1481

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPS--SMSPQMTPWAQSTPAYNALMSPGAAMTPGGP 947
             G+EIP+  G     AG+  GS  TP     SP  +     +PAY+   SP    +PG P
Sbjct: 1482 HGMEIPMGMG-----AGL--GSGMTPGGPGFSPANSESTGFSPAYSPAWSP-QPQSPGSP 1533

Query: 948  GFSPSV 953
              SP +
Sbjct: 1534 ANSPYI 1539



 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/135 (61%), Positives = 96/135 (71%), Gaps = 4/135 (2%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 771  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAG 830

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEF 1117
            LTPSE FFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N+    + + 
Sbjct: 831  LTPSEMFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVRYDGTCRNS----NDQL 886

Query: 1118 VNVYYEMPDFDPTRI 1132
            V + Y     D T I
Sbjct: 887  VQLRYGEDGLDGTSI 901



 Score =  144 bits (362), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 102/170 (60%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD T RNS  QL+QLRYGEDGL G ++E Q + ++  SHK FE
Sbjct: 858 GYIQRRLIKAMESVMVRYDGTCRNSNDQLVQLRYGEDGLDGTSIEFQNLASLKPSHKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD +NE+ LRR FNE ++++++ +  V  ELE                        
Sbjct: 918 KRFKFDYNNEKMLRRCFNEKIVKDVVANAHVHLELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      KE+++L EDRE LR+IF  GES V LPCNL  +I+  Q+
Sbjct: 954 -----------KEYDQLKEDREVLRKIFPKGESKVALPCNLDRMIWNAQQ 992



 Score =  133 bits (335), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 66/77 (85%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            SVE EMN V+ F G YVNYRHLALLCDVMTA+GHLMAITRHGINRQD GALMRCSFEETV
Sbjct: 1377 SVETEMNHVISFDGSYVNYRHLALLCDVMTARGHLMAITRHGINRQDVGALMRCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            D+L DA AH E D ++G
Sbjct: 1437 DILNDAGAHGETDHLKG 1453



 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 42/50 (84%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EESI LGMDPKF RPDWM++TVLPVPPL VRPAVVM GS RNQ+ + + L
Sbjct: 231 EESIALGMDPKFTRPDWMIITVLPVPPLCVRPAVVMFGSTRNQDDLTHKL 280



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 1497 RQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPD 1543
            R +ITPQ+NRPVMGIVQD+L A+RK TKRDVF+ K      + + P+
Sbjct: 523  RNMITPQSNRPVMGIVQDSLCAIRKFTKRDVFVTKPNVMNLLLFLPN 569


>gi|355712716|gb|AES04442.1| polymerase II polypeptide A, 220kDa [Mustela putorius furo]
          Length = 521

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 321/534 (60%), Positives = 385/534 (72%), Gaps = 66/534 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 9    VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 68

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 69   PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 121

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 122  --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 165

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 166  NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 225

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 226  GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 285

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYM LPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 286  GIEQISKVYMPLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 345

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 346  NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 405

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 406  NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 465

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP-------------SSIPGPPAWYP 1443
            CK G+EIP     +G  GP GMFFGSA +P              + P   AW P
Sbjct: 466  CKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSP 519



 Score =  231 bits (589), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 110/163 (67%), Positives = 132/163 (80%), Gaps = 4/163 (2%)

Query: 776 IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
           ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG L
Sbjct: 354 VLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPL 413

Query: 836 MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
           M+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G+EIP
Sbjct: 414 MKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 473

Query: 896 LATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNA 934
                +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A
Sbjct: 474 TNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGA 516



 Score =  211 bits (538), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 152  LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 211

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 212  LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 243

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 244  RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 275



 Score =  131 bits (329), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
           ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 363 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 422

Query: 576 DVLMDAAAHAEADPMRG 592
           DVLM+AAAH E+DPM+G
Sbjct: 423 DVLMEAAAHGESDPMKG 439


>gi|432920271|ref|XP_004079921.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Oryzias
            latipes]
          Length = 1599

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 318/512 (62%), Positives = 379/512 (74%), Gaps = 53/512 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC+K + E +RLS+EAF+WL+GEIE +F Q+   
Sbjct: 1021 VNGDDPLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH 1080

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1081 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKRPK----- 1133

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  A + AE    ++       L +VTANTAIYYDP
Sbjct: 1134 --------TPSLTVF--------LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1177

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQNTV+ EDQE+VNVYYEMPDFD TRISPWLLRIELDRK MTD+KLTME I+EKINAGF
Sbjct: 1178 NPQNTVVAEDQEWVNVYYEMPDFDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGF 1237

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1238 GDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQ 1297

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1298 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1357

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHGI
Sbjct: 1358 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGI 1417

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AA+H E DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1418 NRQDTGPLMKCSFEETVDVLMEAASHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1477

Query: 1405 CKDGIEIP--LATGMMGGPAGMFFGSAATPSS 1434
            CK G+EIP  +    + GP GMFFGS  +P S
Sbjct: 1478 CKYGMEIPTNIPGISVAGPTGMFFGSVPSPMS 1509



 Score =  614 bits (1584), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 299/429 (69%), Positives = 343/429 (79%), Gaps = 53/429 (12%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGKMPQP ILKP+PLWTGKQ+FSLIIPG++N+ RTHSTHPDDEDSGPY
Sbjct: 557 EVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINVIRTHSTHPDDEDSGPY 616

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKV+VE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTVVNN
Sbjct: 617 KHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNN 676

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              HSIGIGD+
Sbjct: 677 WLLIEG----------------------------------------------HSIGIGDS 690

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TYL+IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 691 IADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 750

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVVAGSKGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 751 GSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 810

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 811 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 870

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE VE Q + ++  S+K FE K++FD +N+R    
Sbjct: 871 VKYDATVRNSINQVVQLRYGEDGLAGENVEFQNLASLKPSNKAFEKKFKFDCTNDR---- 926

Query: 494 NVSSLRRVV 502
              +LRRV+
Sbjct: 927 ---ALRRVL 932



 Score =  247 bits (631), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 121/186 (65%), Positives = 144/186 (77%), Gaps = 5/186 (2%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHGINRQDTG L
Sbjct: 1366 VLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPL 1425

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
            M+CSFEETVDVLM+AA+H E DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G+EIP
Sbjct: 1426 MKCSFEETVDVLMEAASHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 1485

Query: 896  --LATGMMGGPAGMFFGSAATP-SSMSPQMTPW-AQSTPAYNALM-SPGAAMTPGGPGFS 950
              +    + GP GMFFGS  +P S MSP MTPW   +TPAY A   S G+ MTPG  GFS
Sbjct: 1486 TNIPGISVAGPTGMFFGSVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFS 1545

Query: 951  PSVAGE 956
            PS A +
Sbjct: 1546 PSAASD 1551



 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 105/152 (69%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQNTV+ EDQE+VNVYYEMPDFD TRISPWLLRIELDRK MTD+K
Sbjct: 1164 LRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDFDVTRISPWLLRIELDRKHMTDRK 1223

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1224 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1255

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++K Q++E+ VDKM+DD+FLRCIE
Sbjct: 1256 RIRIMNSDENKFQEDEEVVDKMDDDVFLRCIE 1287



 Score =  161 bits (407), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 89/113 (78%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 769  VAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAG 828

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            LTP+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 829  LTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 881



 Score =  149 bits (376), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 105/170 (61%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE VE Q + ++  S+K FE
Sbjct: 856 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVEFQNLASLKPSNKAFE 915

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD +N+R LRR+  EDV++++M +  V S L                         
Sbjct: 916 KKFKFDCTNDRALRRVLQEDVVKDVMTNAHVQSVL------------------------- 950

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     EKE++K+ EDRE LR IF +G+S VVLPCNL  +I+  Q+
Sbjct: 951 ----------EKEFDKMKEDREILRAIFPTGDSKVVLPCNLARMIWNAQK 990



 Score =  130 bits (327), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 67/77 (87%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHGINRQDTG LM+CSFEETV
Sbjct: 1375 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETV 1434

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AA+H E DPM+G
Sbjct: 1435 DVLMEAASHGECDPMKG 1451



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 45/50 (90%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE +ILGMDPKFARP+WM+VTVLPVPPL+VRPAVVM GSARNQ+ + + L
Sbjct: 229 EEDLILGMDPKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKL 278



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 513  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 555


>gi|449687727|ref|XP_002164354.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            1, partial [Hydra magnipapillata]
          Length = 1595

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 320/504 (63%), Positives = 380/504 (75%), Gaps = 27/504 (5%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQ--QAQ 1010
            V GED+LSK+A  NAT+LFQ  +RSTLC+K V E +RL+SEAF+WL+GE+E+RF   QAQ
Sbjct: 578  VKGEDKLSKEAQLNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLLGEVESRFNLAQAQ 637

Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-----VENSYLAGLTPSEFFF 1065
                VG    +    P         H+        + G      + N      TPS   F
Sbjct: 638  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVF 697

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L+  A + AE   +VL       L +VTANTAI+YDPDPQNTVI EDQ+FVN
Sbjct: 698  --------LLGQAARDAEHAKDVLCRLEHTTLRKVTANTAIFYDPDPQNTVIAEDQDFVN 749

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            VYYEMPDFDP R+SPWLLRIELDRKRMTD KL+ME I+EKIN GFGDDLNCI+NDDNAEK
Sbjct: 750  VYYEMPDFDPARMSPWLLRIELDRKRMTDSKLSMEQIAEKINQGFGDDLNCIYNDDNAEK 809

Query: 1180 LVLRIRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
            LVLRIRIM S DDSK  ++E+ +DKMEDD+FLRCIEANML+DMTLQGIE+I KVYMHLP 
Sbjct: 810  LVLRIRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGIESIAKVYMHLPS 869

Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
             +SKKR+I    GEFK + +W+LETDG  LMKVLS++D+DPVRT SNDICEIF +LGIEA
Sbjct: 870  EESKKRVIFNAEGEFKHLQEWILETDGNGLMKVLSQKDIDPVRTTSNDICEIFSILGIEA 929

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
            VRKS+EKEM+ V+ F G YVNYRHL+LLCD+MT+KGHLMAITRHGINRQ+ G LMRCSFE
Sbjct: 930  VRKSIEKEMDHVISFDGSYVNYRHLSLLCDIMTSKGHLMAITRHGINRQEVGCLMRCSFE 989

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL----A 1414
            ETVDVL++AA HAEAD +RGVSENII+GQLP +GTGCF+L+LDAEKCK+G+EIPL     
Sbjct: 990  ETVDVLVEAAFHAEADNLRGVSENIILGQLPPIGTGCFNLMLDAEKCKEGMEIPLNIGEG 1049

Query: 1415 TGMMGGPAGMFFGSAATPSSIPGP 1438
             GMM G  G+FFGSAA+PS+   P
Sbjct: 1050 HGMMPG-GGVFFGSAASPSNAMSP 1072



 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 257/424 (60%), Positives = 308/424 (72%), Gaps = 47/424 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++ +MN+L+++  WDGK P P ILKPKPLWTGKQ+FSL+IP  +N +  HS HPDDE +G
Sbjct: 112 KDVVMNLLLWIRKWDGKFPIPAILKPKPLWTGKQIFSLLIPPGINHSGEHSAHPDDESNG 171

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY  ISPGDTKV++E G+L+ GI+CKK++G S  SL+HI   E G E+   FYG++Q V 
Sbjct: 172 PYCHISPGDTKVLIEDGTLISGIICKKTVGPSGNSLVHIIMAEEGPEIAKEFYGDLQKVT 231

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNW L+EG                                              HSIGIG
Sbjct: 232 NNWFLVEG----------------------------------------------HSIGIG 245

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           D IAD  TY +IQ  IKK+K++V EVI++AH   LEPTPGN+LRQTFEN+VNRILN+ RD
Sbjct: 246 DCIADQDTYADIQNTIKKSKQEVNEVIEQAHTNQLEPTPGNSLRQTFENKVNRILNECRD 305

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+ +N+ K+MVVAGSKGSNINISQ+IA VGQQNVEGKRIPFGFR RTLPHF
Sbjct: 306 KTGASAQKSLSVFNSFKSMVVAGSKGSNINISQIIAVVGQQNVEGKRIPFGFRHRTLPHF 365

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKT+ETGYIQRRLIKAMES
Sbjct: 366 NKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTSETGYIQRRLIKAMES 425

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV YD T+RNS   +IQL YGEDG+ GE +E Q + ++  S+  F   + FD SNER  
Sbjct: 426 VMVAYDGTIRNSNRYIIQLCYGEDGMAGERIEGQELSSIKPSNAMFNRMFYFDISNER-R 484

Query: 492 LRNV 495
           L+NV
Sbjct: 485 LKNV 488



 Score =  263 bits (671), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 162/326 (49%), Positives = 202/326 (61%), Gaps = 51/326 (15%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELE-KEMVDHFSWKQLRRIFNEDVLRELMGSGD 716
            L  I+N+D     VLR  +MGSGD    +E +E +D        R    ++L ++   G 
Sbjct: 798  LNCIYNDDNAEKLVLRIRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQG- 856

Query: 717  VISELEKEWEKLCEDREALREIFSS-GESNVVLPCNLMEVIFILQRWKLW--GNENLRFL 773
             I  + K +  L  +    R IF++ GE               LQ W L   GN  ++ L
Sbjct: 857  -IESIAKVYMHLPSEESKKRVIFNAEGE------------FKHLQEWILETDGNGLMKVL 903

Query: 774  ---------------CKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTA 815
                           C+I  +L   +VRKS+EKEM+ V+ F G YVNYRHL+LLCD+MT+
Sbjct: 904  SQKDIDPVRTTSNDICEIFSILGIEAVRKSIEKEMDHVISFDGSYVNYRHLSLLCDIMTS 963

Query: 816  KGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMG 875
            KGHLMAITRHGINRQ+ G LMRCSFEETVDVL++AA HAEAD +RGVSENII+GQLP +G
Sbjct: 964  KGHLMAITRHGINRQEVGCLMRCSFEETVDVLVEAAFHAEADNLRGVSENIILGQLPPIG 1023

Query: 876  TGCFDLLLDAEKCKDGIEIPL----ATGMMGGPAGMFFGSAATPS-SMSPQMTPWAQS-T 929
            TGCF+L+LDAEKCK+G+EIPL      GMM G  G+FFGSAA+PS +MSPQMTPW Q  T
Sbjct: 1024 TGCFNLMLDAEKCKEGMEIPLNIGEGHGMMPG-GGVFFGSAASPSNAMSPQMTPWNQGHT 1082

Query: 930  PAYNALMSP--GAAMTPGGPGFSPSV 953
            P Y    SP  G+ MTPG   FSPS 
Sbjct: 1083 PGYGDGWSPALGSGMTPGAASFSPSA 1108



 Score =  206 bits (523), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/153 (67%), Positives = 114/153 (74%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAI+YDPDPQNTVI EDQ+FVNVYYEMPDFDP R+SPWLLRIELDRKRMTD K
Sbjct: 721  LRKVTANTAIFYDPDPQNTVIAEDQDFVNVYYEMPDFDPARMSPWLLRIELDRKRMTDSK 780

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L+ME I+EKIN GFG                            DDLNCI+NDDNAEKLVL
Sbjct: 781  LSMEQIAEKINQGFG----------------------------DDLNCIYNDDNAEKLVL 812

Query: 1649 RIRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIM S DDSK  ++E+ +DKMEDD+FLRCIE
Sbjct: 813  RIRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIE 845



 Score =  156 bits (395), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/106 (68%), Positives = 83/106 (78%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   +    +Q+IA VGQQNVEGKRIPFGFR RTLPHF KDDYGPESRGFVENSYLAG
Sbjct: 326  VAGSKGSNINISQIIAVVGQQNVEGKRIPFGFRHRTLPHFNKDDYGPESRGFVENSYLAG 385

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
            LTP+EFFFHAMGGREGLIDTAVKT+ET  +   L +   +  + YD
Sbjct: 386  LTPTEFFFHAMGGREGLIDTAVKTSETGYIQRRLIKAMESVMVAYD 431



 Score =  132 bits (333), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/77 (76%), Positives = 69/77 (89%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            S+EKEM+ V+ F G YVNYRHL+LLCD+MT+KGHLMAITRHGINRQ+ G LMRCSFEETV
Sbjct: 933  SIEKEMDHVISFDGSYVNYRHLSLLCDIMTSKGHLMAITRHGINRQEVGCLMRCSFEETV 992

Query: 576  DVLMDAAAHAEADPMRG 592
            DVL++AA HAEAD +RG
Sbjct: 993  DVLVEAAFHAEADNLRG 1009



 Score =  117 bits (293), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 89/170 (52%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD T+RNS   +IQL YGEDG+ GE +E Q + ++  S+  F 
Sbjct: 413 GYIQRRLIKAMESVMVAYDGTIRNSNRYIIQLCYGEDGMAGERIEGQELSSIKPSNAMFN 472

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             + FD SNER+L+ +                                    NEDVLR +
Sbjct: 473 RMFYFDISNERRLKNVL-----------------------------------NEDVLRNI 497

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                  + +E+E+ +L +DRE LR IF +G   V LP  L  +I+  Q+
Sbjct: 498 YSDSTTTNAIEEEFRQLKDDREMLRNIFPNGNKKVNLPVKLSRLIWNSQK 547



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +  I + PRQIITPQ+N+P MGIVQD+L AV K TKRDVFL+K
Sbjct: 70   ITEILMVPRQIITPQSNKPCMGIVQDSLCAVYKFTKRDVFLEK 112


>gi|348523738|ref|XP_003449380.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
           [Oreochromis niloticus]
          Length = 1966

 Score =  620 bits (1600), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 300/422 (71%), Positives = 339/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGKMPQP ILKP+PLWTGKQ+FSLIIPG++N+ RTHSTHPDDEDSGPY
Sbjct: 557 EVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINVIRTHSTHPDDEDSGPY 616

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKV+VE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTVVNN
Sbjct: 617 KHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNN 676

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              HSIGIGD+
Sbjct: 677 WLLIEG----------------------------------------------HSIGIGDS 690

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TYL+IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 691 IADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 750

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVVAGSKGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 751 GSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 810

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 811 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 870

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE VE Q + TV  SHK FE K++FD +NER   R
Sbjct: 871 VKYDGTVRNSINQVVQLRYGEDGLAGENVEFQNLATVKPSHKAFEKKFKFDCTNERALRR 930

Query: 494 NV 495
            +
Sbjct: 931 TL 932



 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 314/512 (61%), Positives = 379/512 (74%), Gaps = 53/512 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA +NATLLF   +RSTLC+K + E +RLS+EAF+WL+GEIE +F Q+   
Sbjct: 1021 VNGDDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH 1080

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1081 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKRPK----- 1133

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  A + AE    ++       L +VTANTAIYYDP
Sbjct: 1134 --------TPSLTVF--------LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1177

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQNTV+ EDQE+VNVYYEMPDFD TRISPWLLRIELDRK MTD+KLTME I+EKINAGF
Sbjct: 1178 NPQNTVVAEDQEWVNVYYEMPDFDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGF 1237

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            G+DLNCIFNDDNAEKLVLRIRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1238 GEDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQ 1297

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1298 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1357

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHGI
Sbjct: 1358 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGI 1417

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+A++H E DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1418 NRQDTGPLMKCSFEETVDVLMEASSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1477

Query: 1405 CKDGIEIP--LATGMMGGPAGMFFGSAATPSS 1434
            CK G+EIP  +    + GP GMFFG+  +P S
Sbjct: 1478 CKYGMEIPTNIPGISVAGPTGMFFGTVPSPMS 1509



 Score =  247 bits (630), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 120/186 (64%), Positives = 145/186 (77%), Gaps = 5/186 (2%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHGINRQDTG L
Sbjct: 1366 VLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPL 1425

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
            M+CSFEETVDVLM+A++H E DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G+EIP
Sbjct: 1426 MKCSFEETVDVLMEASSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 1485

Query: 896  --LATGMMGGPAGMFFGSAATP-SSMSPQMTPW-AQSTPAYNALM-SPGAAMTPGGPGFS 950
              +    + GP GMFFG+  +P S MSP MTPW   +TPAY A   S G+ MTPGG GFS
Sbjct: 1486 TNIPGISVAGPTGMFFGTVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGGAGFS 1545

Query: 951  PSVAGE 956
            PS A +
Sbjct: 1546 PSAASD 1551



 Score =  211 bits (537), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQNTV+ EDQE+VNVYYEMPDFD TRISPWLLRIELDRK MTD+K
Sbjct: 1164 LRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDFDVTRISPWLLRIELDRKHMTDRK 1223

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGF                            G+DLNCIFNDDNAEKLVL
Sbjct: 1224 LTMEQIAEKINAGF----------------------------GEDLNCIFNDDNAEKLVL 1255

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++K Q++E+ VDKM+DD+FLRCIE
Sbjct: 1256 RIRIMNSDENKFQEDEEVVDKMDDDVFLRCIE 1287



 Score =  160 bits (405), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 89/113 (78%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 769  VAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAG 828

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            LTP+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 829  LTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSI 881



 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 81/170 (47%), Positives = 103/170 (60%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE VE Q + TV  SHK FE
Sbjct: 856 GYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVEFQNLATVKPSHKAFE 915

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD +NER LRR   EDV++++M +  V   L                         
Sbjct: 916 KKFKFDCTNERALRRTLQEDVVKDVMTNAHVQGTL------------------------- 950

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     E+E++K+ EDRE LR IF +G+S VVLPCNL  +I+  Q+
Sbjct: 951 ----------EREFDKMKEDREILRAIFPTGDSKVVLPCNLARMIWNAQK 990



 Score =  129 bits (325), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 67/77 (87%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHGINRQDTG LM+CSFEETV
Sbjct: 1375 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETV 1434

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+A++H E DPM+G
Sbjct: 1435 DVLMEASSHGECDPMKG 1451



 Score = 87.8 bits (216), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 45/50 (90%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE IILGMDPKFARP+WM+VTVLPVPPL+VRPAVVM GSARNQ+ + + L
Sbjct: 229 EEDIILGMDPKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKL 278



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 513  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 555


>gi|326672374|ref|XP_003199653.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Danio rerio]
          Length = 1921

 Score =  620 bits (1599), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 319/510 (62%), Positives = 379/510 (74%), Gaps = 55/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+DQLS+QA ENATLLF   +RSTLC+K + E +RLS+EAF+WL+GEIE +F Q+   
Sbjct: 1020 VNGDDQLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH 1079

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1080 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKRPK----- 1132

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  A + AE    ++       L +VTANTAIYYDP
Sbjct: 1133 --------TPSLTVF--------LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1176

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQNTV+ EDQE+VNVYYEMPDFD TRISPWLLRIELDRK MTD+KLTME I+EKINAGF
Sbjct: 1177 NPQNTVVTEDQEWVNVYYEMPDFDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGF 1236

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++K Q+E   VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1237 GDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQ 1294

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1295 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1354

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHGI
Sbjct: 1355 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGI 1414

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+A++H E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1415 NRQDTGPLMKCSFEETVDVLMEASSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1474

Query: 1405 CKDGIEIPLATGMMGGPAGMFFGSAATPSS 1434
            CK G+EIP  T + G   GMFFGSA +P S
Sbjct: 1475 CKYGMEIP--TNIPGITTGMFFGSAPSPMS 1502



 Score =  616 bits (1588), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 303/451 (67%), Positives = 349/451 (77%), Gaps = 56/451 (12%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPD+EDSGPY
Sbjct: 556 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINAIRTHSTHPDEEDSGPY 615

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKV+VE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTVVNN
Sbjct: 616 KNISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNN 675

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              HSIGIGD+
Sbjct: 676 WLLIEG----------------------------------------------HSIGIGDS 689

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD  TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 690 IADKATYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 749

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVVAGSKGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 750 GSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 809

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 810 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 869

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GEAVE Q + T+  SHK FE K++FD +NER    
Sbjct: 870 VKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNMATLKPSHKAFEKKFKFDYANER---- 925

Query: 494 NVSSLRRVVNS---KPLLIGCWKLTSVEKEM 521
              +LRR +     K ++      +S+E+E 
Sbjct: 926 ---ALRRTLQEDVVKDVMTNAHVQSSLEREF 953



 Score =  246 bits (629), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 121/184 (65%), Positives = 145/184 (78%), Gaps = 5/184 (2%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHGINRQDTG L
Sbjct: 1363 VLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPL 1422

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
            M+CSFEETVDVLM+A++H E+DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G+EIP
Sbjct: 1423 MKCSFEETVDVLMEASSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 1482

Query: 896  LATGMMGGPAGMFFGSAATP-SSMSPQMTPW-AQSTPAYNALM-SPGAAMTPGGPGFSPS 952
              T + G   GMFFGSA +P S MSP MTPW   +TPAY A   S G+ MTPG  GFSPS
Sbjct: 1483 --TNIPGITTGMFFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPS 1540

Query: 953  VAGE 956
             A +
Sbjct: 1541 AASD 1544



 Score =  207 bits (526), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 105/152 (69%), Positives = 115/152 (75%), Gaps = 30/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQNTV+ EDQE+VNVYYEMPDFD TRISPWLLRIELDRK MTD+K
Sbjct: 1163 LRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDFDVTRISPWLLRIELDRKHMTDRK 1222

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1223 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1254

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++K Q  E+ VDKM+DD+FLRCIE
Sbjct: 1255 RIRIMNSDENKFQ--EEVVDKMDDDVFLRCIE 1284



 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 89/113 (78%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 768  VAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAG 827

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            LTP+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 828  LTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 880



 Score =  158 bits (400), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 105/170 (61%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GEAVE Q + T+  SHK FE
Sbjct: 855 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNMATLKPSHKAFE 914

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD +NER LRR   EDV++++M +  V S LE                        
Sbjct: 915 KKFKFDYANERALRRTLQEDVVKDVMTNAHVQSSLE------------------------ 950

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+EK+ EDRE LR IF +G+S VVLPCNL  +I+  Q+
Sbjct: 951 -----------REFEKMREDREILRAIFPTGDSKVVLPCNLARMIWNAQK 989



 Score =  130 bits (327), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHGINRQDTG LM+CSFEETV
Sbjct: 1372 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETV 1431

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+A++H E+DPM+G
Sbjct: 1432 DVLMEASSHGESDPMKG 1448



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 45/50 (90%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE IILGMDPK+ARP+WM+VTVLPVPPL+VRPAVVM GSARNQ+ + + L
Sbjct: 228 EEDIILGMDPKYARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKL 277



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 512  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 554


>gi|825713|emb|CAA52862.1| RNA polymerase II largest subunit [Homo sapiens]
          Length = 1970

 Score =  620 bits (1598), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 316/510 (61%), Positives = 379/510 (74%), Gaps = 53/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+ L+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDLLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+ PM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESYPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
            CK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509



 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  248 bits (632), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 147/313 (46%), Positives = 197/313 (62%), Gaps = 22/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+ PM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESYPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480

Query: 889  KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
            K G+EIP     +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540

Query: 944  PGGPGFSPSVAGE 956
            PG  GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553



 Score =  211 bits (537), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 132/291 (45%), Positives = 161/291 (55%), Gaps = 60/291 (20%)

Query: 1390 RMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGMFFGSAATPSSIPGPPAWYPIHIAIS 1449
            R+    FDLLL   + K    I     M+G  A    G  AT  ++         H A  
Sbjct: 1059 RLSGEAFDLLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTL------NTFHYA-- 1110

Query: 1450 LLSRFTTVICIYTLKTFLEMKDFKKPPQKGFGLLTLTLMVENIHVTPRQIITPQNNRPVM 1509
             +S     + +  LK  + +    K P      LT+ L+ ++     R            
Sbjct: 1111 GVSAKNVTLGVPRLKELINISKKPKTPS-----LTVFLLGQSARDAER------------ 1153

Query: 1510 GIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTR 1569
               +D L  +   T R     KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  R
Sbjct: 1154 --AKDILCRLEHTTLR-----KVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVAR 1206

Query: 1570 ISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAG 1629
            ISPWLLR+ELDRK MTD+KLTME I+EKINAGFG                          
Sbjct: 1207 ISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFG-------------------------- 1240

Query: 1630 FGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
              DDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1241 --DDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  153 bits (387), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  128 bits (322), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 67/77 (87%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+ PM+G
Sbjct: 1437 DVLMEAAAHGESYPMKG 1453



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|34597078|gb|AAQ77114.1| RNA polymerase II largest subunit [Lithobius forticatus]
          Length = 445

 Score =  620 bits (1598), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 311/456 (68%), Positives = 349/456 (76%), Gaps = 56/456 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMMN+LMFLPIWDGKMP P +LKPKPLWTGKQ+FSLIIPGNVN  R H +HPDDED  
Sbjct: 17  KDQMMNLLMFLPIWDGKMPMPAVLKPKPLWTGKQLFSLIIPGNVNCIRAHYSHPDDEDDS 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+ GILCKK+LGTS+GSLLHI  LELG  V G FY +IQ V+
Sbjct: 77  PYKWISPGDTKVLVEHGELICGILCKKTLGTSAGSLLHIVMLELGWGVAGLFYWHIQMVI 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGI 
Sbjct: 137 NNWLLLEG----------------------------------------------HSIGID 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY++IQ +IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 151 DTIADPQTYIDIQNSIKKAKQDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+E+NN K+MVV+G+KGS INISQVIACVGQQNVEGKRIPFGF KRTLPHF
Sbjct: 211 KTGSSAEKSLSEFNNFKSMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFCKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           +M  YD T+RNSVGQLIQLRYGEDGL G AVE Q + T+  S+K FE K++FD SNER  
Sbjct: 331 IMATYDGTIRNSVGQLIQLRYGEDGLDGGAVEFQALPTLKPSNKAFEKKFKFDISNER-- 388

Query: 492 LRNVSSLRRVVNS---KPLLIGCWKLTSVEKEMNTV 524
                 L+RV N    K L+     +  +EKE  ++
Sbjct: 389 -----QLKRVFNEDIVKELMGSAHIVNELEKEWESL 419



 Score =  167 bits (422), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 87/161 (54%), Positives = 103/161 (63%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMES+M  YD T+RNSVGQLIQLRYGEDGL G AVE Q + T+  S+K FE
Sbjct: 318 GYIQRRLIKAMESIMATYDGTIRNSVGQLIQLRYGEDGLDGGAVEFQALPTLKPSNKAFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD SNERQL+R+FNED+++ELMGS  +++ELEKE                      
Sbjct: 378 KKFKFDISNERQLKRVFNEDIVKELMGSAHIVNELEKE---------------------- 415

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                        WE L  DRE LR IF  G+S VVLPCNL
Sbjct: 416 -------------WESLKRDRELLRNIFPKGDSKVVLPCNL 443



 Score =  166 bits (420), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/189 (49%), Positives = 116/189 (61%), Gaps = 11/189 (5%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIACVGQQNVEGKRIPFGF KRTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 233  GAKGSKINISQVIACVGQQNVEGKRIPFGFCKRTLPHFIKDDYGPESRGFVENSYLAGLT 292

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
            PSEFFFHAMGGREGLIDTAVKTAET  +   L +   +    YD   +N+V     + + 
Sbjct: 293  PSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESIMATYDGTIRNSV----GQLIQ 348

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            + Y     D   +    L       +  +KK   +  +E+        L  +FN+D  ++
Sbjct: 349  LRYGEDGLDGGAVEFQALPTLKPSNKAFEKKFKFDISNER-------QLKRVFNEDIVKE 401

Query: 1180 LVLRIRIMN 1188
            L+    I+N
Sbjct: 402  LMGSAHIVN 410


>gi|281352199|gb|EFB27783.1| hypothetical protein PANDA_013866 [Ailuropoda melanoleuca]
          Length = 1989

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 318/524 (60%), Positives = 381/524 (72%), Gaps = 67/524 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1028 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1087

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1088 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1140

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1141 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1184

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1185 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1244

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1245 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1304

Query: 1225 GIEAIGKV--------------YMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMK 1270
            GIE I KV              YMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+
Sbjct: 1305 GIEQISKVSPTPPHPRHHPLQVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMR 1364

Query: 1271 VLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVM 1330
            VLSE+DVDPVRT SNDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD M
Sbjct: 1365 VLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTM 1424

Query: 1331 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 1390
            T +GHLMAITRHG+NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL  
Sbjct: 1425 TCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAP 1484

Query: 1391 MGTGCFDLLLDAEKCKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
             GTGCFDLLLDAEKCK G+EIP     +G  GP GMFFGSA +P
Sbjct: 1485 AGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1528



 Score =  611 bits (1575), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 293/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP +LKP+PLWTGKQ+FSLI+PG++N  RTHSTHPDDEDSGPY
Sbjct: 564 EVMNLLMFLSTWDGKVPQPAVLKPRPLWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPY 623

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH+V   FY NIQTV+NN
Sbjct: 624 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINN 683

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 684 WLLIEG----------------------------------------------HTIGIGDS 697

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 698 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 757

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 758 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 817

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 818 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 877

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 878 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 937

Query: 494 NV 495
            +
Sbjct: 938 TL 939



 Score =  251 bits (640), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 122/186 (65%), Positives = 146/186 (78%), Gaps = 5/186 (2%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG L
Sbjct: 1387 VLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPL 1446

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
            M+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G+EIP
Sbjct: 1447 MKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 1506

Query: 896  LATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMTPGGPGFS 950
                 +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MTPG  GFS
Sbjct: 1507 TNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFS 1566

Query: 951  PSVAGE 956
            PS A +
Sbjct: 1567 PSAASD 1572



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1171 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1230

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1231 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1262

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1263 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1294



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 778  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 837

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 838  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 888



 Score =  153 bits (387), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 863 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 922

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 923 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 958

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 959 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 997



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1396 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1455

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1456 DVLMEAAAHGESDPMKG 1472



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 520  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 562


>gi|119610588|gb|EAW90182.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
            CRA_b [Homo sapiens]
          Length = 1511

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 321/529 (60%), Positives = 385/529 (72%), Gaps = 64/529 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 602  VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 661

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 662  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 714

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 715  --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 758

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 759  NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 818

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 819  GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 878

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 879  GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 938

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 939  NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 998

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 999  NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1058

Query: 1405 CKDGIEIPL---------ATGMMGGPAGMFFGSAATPSSIPGP---PAW 1441
            CK G+EIP           +GM  G AG F  SAA+ +S   P   PAW
Sbjct: 1059 CKYGMEIPTNIPGLGAAGRSGMTPGAAG-FSPSAASDASGFSPGYSPAW 1106



 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 138 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 197

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 198 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 257

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 258 WLLIEG----------------------------------------------HTIGIGDS 271

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 272 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 331

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 332 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 391

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 392 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 451

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 452 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 511

Query: 494 NV 495
            +
Sbjct: 512 TL 513



 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 745  LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 804

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 805  LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 836

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 837  RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 868



 Score =  210 bits (535), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 133/328 (40%), Positives = 188/328 (57%), Gaps = 38/328 (11%)

Query: 664  LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
            L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 822  LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 879

Query: 718  ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
            I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 880  IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 939

Query: 769  NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 940  DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 999

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 1000 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1059

Query: 889  KDGIEIPL---------ATGMMGGPAGMFFGSAATPSSMSPQMTP-WAQSTPAYNA---- 934
            K G+EIP           +GM  G AG    +A+  S  SP  +P W+ +  +  +    
Sbjct: 1060 KYGMEIPTNIPGLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPS 1119

Query: 935  ---LMSPGAAMTPG----GPGFSPSVAG 955
               + SPG AM+P      P + P   G
Sbjct: 1120 SPYIPSPGGAMSPSYSPTSPAYEPRSPG 1147



 Score =  160 bits (406), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 352  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 411

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 412  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 462



 Score =  154 bits (390), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 437 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 496

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 497 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 532

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 533 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 571



 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 956  ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1015

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1016 DVLMEAAAHGESDPMKG 1032



 Score = 69.7 bits (169), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 94   IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 136


>gi|126309154|ref|XP_001364909.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
            [Monodelphis domestica]
          Length = 1932

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 322/529 (60%), Positives = 385/529 (72%), Gaps = 64/529 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V GED LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGEDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPL---------ATGMMGGPAGMFFGSAATPSSIPGP---PAW 1441
            CK G+EIP           +GM  G AG F  SAA+ +S   P   PAW
Sbjct: 1480 CKYGMEIPTNIPGLGAAGRSGMTPGAAG-FSPSAASDASGFSPGYSPAW 1527



 Score =  610 bits (1574), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 293/422 (69%), Positives = 337/422 (79%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLI+PG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH+    FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  209 bits (533), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 132/325 (40%), Positives = 187/325 (57%), Gaps = 38/325 (11%)

Query: 667  IFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISE 720
            IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  I +
Sbjct: 1246 IFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG--IEQ 1303

Query: 721  LEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNENLR 771
            + K +  L + D +    I   GE       +L  + + ++ +L    +      + ++ 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 772  FLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQD 831
             +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQD
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 832  TGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDG 891
            TG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYG 1483

Query: 892  IEIPL---------ATGMMGGPAGMFFGSAATPSSMSPQMTP-WAQSTPAYNA------- 934
            +EIP           +GM  G AG    +A+  S  SP  +P W+ +  +  +       
Sbjct: 1484 MEIPTNIPGLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPY 1543

Query: 935  LMSPGAAMTPG----GPGFSPSVAG 955
            + SPG AM+P      P + P   G
Sbjct: 1544 IPSPGGAMSPSYSPTSPAYEPRSPG 1568



 Score =  161 bits (407), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 96/209 (45%), Positives = 123/209 (58%), Gaps = 18/209 (8%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV--------- 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++         
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYG 892

Query: 1111 ----IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKI-NAGFG 1165
                  E  EF N+    P     +      R +   +R   + L  E + + + NA   
Sbjct: 893  EDGLAGESVEFQNLATLKPS---NKAFEKKFRFDYTNERALRRTLQEELVKDVLSNAHIQ 949

Query: 1166 DDLNCIFNDDNAEKLVLRIRIMNSDDSKM 1194
            ++L   F     ++ VLR+ I  + DSK+
Sbjct: 950  NELEREFERMREDREVLRV-IFPTGDSKV 977



 Score =  151 bits (382), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   E+++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEELVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|156380969|ref|XP_001632039.1| predicted protein [Nematostella vectensis]
 gi|156219089|gb|EDO39976.1| predicted protein [Nematostella vectensis]
          Length = 1929

 Score =  618 bits (1593), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 332/516 (64%), Positives = 377/516 (73%), Gaps = 57/516 (11%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV- 1011
            VAGED +SKQA  NATLLF  L+RSTLCTK VAE + LSSEAFEWL+GEIE RF  + V 
Sbjct: 1019 VAGEDHISKQAQFNATLLFNILLRSTLCTKRVAEEFHLSSEAFEWLLGEIETRFNHSHVK 1078

Query: 1012 ----IACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
                +  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1079 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINVSKKPK----- 1131

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        LI  A + AE    ++       L +VTANTAIYYDP
Sbjct: 1132 --------TPSLTVF--------LIGQAARDAEMAKAVLCRLEHTTLRKVTANTAIYYDP 1175

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQNTVI EDQ+FVNVYYEMPDFD  RISPWLLRIELDRKRMTDKKLTME ISEKIN GF
Sbjct: 1176 DPQNTVIAEDQDFVNVYYEMPDFDVARISPWLLRIELDRKRMTDKKLTMEQISEKINLGF 1235

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMN+DD KMQD+ED     +D +FLRCIEANML+DMTLQ
Sbjct: 1236 GDDLNCIFNDDNAEKLVLRIRIMNNDDGKMQDDEDVDKMDDD-VFLRCIEANMLTDMTLQ 1294

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE+I KVYM+LP  D KKRI++TE GEFKAI +WLLETDG SLM+VLSERDVDPVRT S
Sbjct: 1295 GIESISKVYMNLPHEDKKKRIVVTEQGEFKAIQEWLLETDGVSLMRVLSERDVDPVRTTS 1354

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIF VLGIEAVRK+VE+EM+ V+ F G YVNYRHLALLCD+MT +GHLMAITRHGI
Sbjct: 1355 NDICEIFSVLGIEAVRKAVEREMDHVISFDGSYVNYRHLALLCDIMTCRGHLMAITRHGI 1414

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQ+ GALMR SFEETVDVLMDAAAHAE D +RGVSE IIMG+LPR+GTG FDL+LDAEK
Sbjct: 1415 NRQEVGALMRSSFEETVDVLMDAAAHAETDYLRGVSECIIMGKLPRIGTGSFDLMLDAEK 1474

Query: 1405 CKDGIEIP---LATGMMGGPA--GMFFGSAATPSSI 1435
            CK G+EIP   +  GM G  A  G+FFG+A +PS++
Sbjct: 1475 CKHGMEIPTNIMGPGMGGAMAAIGVFFGAAGSPSAM 1510



 Score =  570 bits (1469), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 283/418 (67%), Positives = 318/418 (76%), Gaps = 55/418 (13%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++ MMN+LM++P WDGK+PQP ILKP+PLWTGKQ+ S+IIPGNVN+ RTHSTHPDDEDSG
Sbjct: 562 KDAMMNLLMWIPTWDGKIPQPAILKPRPLWTGKQICSMIIPGNVNVIRTHSTHPDDEDSG 621

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+ ISPGDTK           ILCKKSLGTSSGSL+HI  +ELGH++   FY ++Q VV
Sbjct: 622 PYKHISPGDTKAR---------ILCKKSLGTSSGSLIHIIAMELGHDIARMFYSDVQCVV 672

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 673 NNWLLLEG----------------------------------------------HSIGIG 686

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           D IAD  TY EIQ A KKAK++VIEVI+KAHN +LEPTPGNTLRQTFENQVNRILND RD
Sbjct: 687 DCIADSDTYDEIQRATKKAKKEVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDCRD 746

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSA+KSL+E+NN KAMVVAGSKGS INISQVIA VGQQNVEGKRIPFGFR RTLPHF
Sbjct: 747 KTGGSAQKSLSEFNNFKAMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFRHRTLPHF 806

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME 
Sbjct: 807 IKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEG 866

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           + V YD TVRNS  QLIQLRYGEDG+ G A+E Q + T+  S   FE K+ FDP+N+R
Sbjct: 867 LSVAYDGTVRNSNNQLIQLRYGEDGMDGIAIEFQNMPTMRPSKTAFERKFHFDPTNDR 924



 Score =  244 bits (623), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 124/184 (67%), Positives = 146/184 (79%), Gaps = 11/184 (5%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRK+VE+EM+ V+ F G YVNYRHLALLCD+MT +GHLMAITRHGINR
Sbjct: 1357 ICEIFSVLGIEAVRKAVEREMDHVISFDGSYVNYRHLALLCDIMTCRGHLMAITRHGINR 1416

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            Q+ GALMR SFEETVDVLMDAAAHAE D +RGVSE IIMG+LPR+GTG FDL+LDAEKCK
Sbjct: 1417 QEVGALMRSSFEETVDVLMDAAAHAETDYLRGVSECIIMGKLPRIGTGSFDLMLDAEKCK 1476

Query: 890  DGIEIP---LATGMMGGPA--GMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSP--GAA 941
             G+EIP   +  GM G  A  G+FFG+A +PS+MSPQMTPW   +TPAY    SP  G+ 
Sbjct: 1477 HGMEIPTNIMGPGMGGAMAAIGVFFGAAGSPSAMSPQMTPWNMGATPAYMEAWSPGMGSG 1536

Query: 942  MTPG 945
            MTPG
Sbjct: 1537 MTPG 1540



 Score =  193 bits (490), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 108/152 (71%), Positives = 115/152 (75%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQ+FVNVYYEMPDFD  RISPWLLRIELDRKRMTDKK
Sbjct: 1162 LRKVTANTAIYYDPDPQNTVIAEDQDFVNVYYEMPDFDVARISPWLLRIELDRKRMTDKK 1221

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME ISEKIN GFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1222 LTMEQISEKINLGFG----------------------------DDLNCIFNDDNAEKLVL 1253

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN+DD KMQ +++ VDKM+DD+FLRCIE
Sbjct: 1254 RIRIMNNDDGKMQ-DDEDVDKMDDDVFLRCIE 1284



 Score =  160 bits (406), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 78/125 (62%), Positives = 92/125 (73%), Gaps = 4/125 (3%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIA VGQQNVEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 767  VAGSKGSKINISQVIAVVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAG 826

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEF 1117
            LTP+EFFFHAMGGREGLIDTAVKT+ET  +   L +     ++ YD     TV   + + 
Sbjct: 827  LTPTEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEGLSVAYD----GTVRNSNNQL 882

Query: 1118 VNVYY 1122
            + + Y
Sbjct: 883  IQLRY 887



 Score =  131 bits (329), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            +VE+EM+ V+ F G YVNYRHLALLCD+MT +GHLMAITRHGINRQ+ GALMR SFEETV
Sbjct: 1372 AVEREMDHVISFDGSYVNYRHLALLCDIMTCRGHLMAITRHGINRQEVGALMRSSFEETV 1431

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLMDAAAHAE D +RG
Sbjct: 1432 DVLMDAAAHAETDYLRG 1448



 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 94/170 (55%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME + V YD TVRNS  QLIQLRYGEDG+ G A+E Q + T+  S   FE
Sbjct: 854 GYIQRRLVKAMEGLSVAYDGTVRNSNNQLIQLRYGEDGMDGIAIEFQNMPTMRPSKTAFE 913

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+ FDP+N+R + R   ED++R+L GS   + ELE E             FN       
Sbjct: 914 RKFHFDPTNDRWMTRYLQEDLVRDLSGSATALQELEGE-------------FN------- 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                          KL EDRE LR+I  SG + V LP NL  +I+  Q+
Sbjct: 954 ---------------KLQEDREILRKIQPSGNARVALPVNLSRLIWNAQK 988



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 37/43 (86%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +  I + PR I+TPQ+N+PVMGIVQD+LTAVRK TKRDVF++K
Sbjct: 520  ITEIMMVPRNIVTPQSNKPVMGIVQDSLTAVRKFTKRDVFIEK 562



 Score = 48.9 bits (115), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 41/50 (82%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE   LGMDPK ARPDWM+VTVLPVPPL VRP++V+ G+AR+Q+ + + L
Sbjct: 236 EECNALGMDPKNARPDWMIVTVLPVPPLPVRPSIVLSGTARSQDDLTHKL 285


>gi|38232209|gb|AAR14940.1| RNA polymerase II largest subunit [Acanthocyclops vernalis]
          Length = 444

 Score =  617 bits (1592), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 296/419 (70%), Positives = 334/419 (79%), Gaps = 46/419 (10%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++E MM ++MFLP WDGK+P P I+KP+P+WTGKQ+F+LIIPGNVN  R H+THPD+E++
Sbjct: 16  SKEDMMTLVMFLPTWDGKLPIPAIIKPRPMWTGKQLFTLIIPGNVNCMRLHATHPDEENN 75

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY WISPGDT+V++EHG LLMGILCKKSLG S+ SLLH+  LE GHE  G+FYGNIQTV
Sbjct: 76  GPYHWISPGDTRVLIEHGELLMGILCKKSLGASAASLLHVSQLENGHEENGKFYGNIQTV 135

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           +NNWLLLEG                                              HSIGI
Sbjct: 136 INNWLLLEG----------------------------------------------HSIGI 149

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADP TY +I   IKKAK++VIEVI KAH+ +LE TPGNTLRQTFENQVNRILNDAR
Sbjct: 150 GDTIADPGTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDAR 209

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTG SAK+SLTE+NN K MVVAG+KGS+IN+SQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 210 DKTGASAKRSLTEFNNFKVMVVAGAKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPH 269

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 270 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 329

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           SVMV+YD TVRN+VGQ+IQ RYGEDGL  EAVE Q I T+ LS+  FE KY+FDP+NER
Sbjct: 330 SVMVNYDGTVRNAVGQMIQFRYGEDGLAAEAVEFQSIKTIQLSNAVFERKYKFDPTNER 388



 Score =  169 bits (427), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 86/102 (84%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAV 343



 Score =  167 bits (422), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 84/161 (52%), Positives = 108/161 (67%), Gaps = 36/161 (22%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRN+VGQ+IQ RYGEDGL  EAVE Q I T+ LS+  FE
Sbjct: 318 GYIQRRLIKAMESVMVNYDGTVRNAVGQMIQFRYGEDGLAAEAVEFQSIKTIQLSNAVFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KY+FDP+NER +R++F ++V+RE++GS DV +E+E                        
Sbjct: 378 RKYKFDPTNERYVRKLFTDEVIREMVGSNDV-AEIE------------------------ 412

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                      +EWE+LC+DRE+LR+IF +G + VVLPCNL
Sbjct: 413 -----------REWEQLCKDRESLRQIFPTGNNKVVLPCNL 442


>gi|410906965|ref|XP_003966962.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like, partial
            [Takifugu rubripes]
          Length = 1628

 Score =  617 bits (1592), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 316/512 (61%), Positives = 378/512 (73%), Gaps = 53/512 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LSKQA +NATLLF   +RSTLC+K + E +RLS+EAF+WL+GEIE +F  +   
Sbjct: 1021 VNGDDPLSKQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNHSIAH 1080

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1081 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKRPK----- 1133

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  A + AE    ++       L +VTANTAIYYDP
Sbjct: 1134 --------TPSLTVF--------LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1177

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQNTV+ EDQE+VNVYYEMPDFD TRISPWLLRIELDRK MTD+KLTME I+EKINAGF
Sbjct: 1178 NPQNTVVEEDQEWVNVYYEMPDFDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGF 1237

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1238 GDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQ 1297

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1298 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1357

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHGI
Sbjct: 1358 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGI 1417

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+A++H E DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1418 NRQDTGPLMKCSFEETVDVLMEASSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1477

Query: 1405 CKDGIEIP--LATGMMGGPAGMFFGSAATPSS 1434
            CK G+EIP  +    + G  GMFFGSA +P S
Sbjct: 1478 CKYGMEIPTNIPGISVAGSTGMFFGSAPSPMS 1509



 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 303/450 (67%), Positives = 350/450 (77%), Gaps = 56/450 (12%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGKMPQP ILKP+ LWTGKQ+FSLIIPG++N+ RTHSTHPDDEDSGPY
Sbjct: 557 EVMNLLMFLSTWDGKMPQPAILKPRALWTGKQIFSLIIPGHINVIRTHSTHPDDEDSGPY 616

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKV+VE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTVVNN
Sbjct: 617 KHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNN 676

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              HSIGIGD+
Sbjct: 677 WLLIEG----------------------------------------------HSIGIGDS 690

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TYL+IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 691 IADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 750

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVVAGSKGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 751 GSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 810

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 811 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 870

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE VE Q + T+  SH+ FE K++FD +NER    
Sbjct: 871 VKYDGTVRNSINQVVQLRYGEDGLAGENVEFQNVATLKPSHRAFEKKFKFDCTNER---- 926

Query: 494 NVSSLRRVVNS---KPLLIGCWKLTSVEKE 520
              +LRR +     K ++      +S+E+E
Sbjct: 927 ---ALRRTLQEDVVKDVMTNAHVQSSLERE 953



 Score =  244 bits (623), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 120/186 (64%), Positives = 144/186 (77%), Gaps = 5/186 (2%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHGINRQDTG L
Sbjct: 1366 VLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPL 1425

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
            M+CSFEETVDVLM+A++H E DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G+EIP
Sbjct: 1426 MKCSFEETVDVLMEASSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 1485

Query: 896  --LATGMMGGPAGMFFGSAATP-SSMSPQMTPW-AQSTPAYNALM-SPGAAMTPGGPGFS 950
              +    + G  GMFFGSA +P S MSP MTPW   +TPAY A   S G+ MTPG  GFS
Sbjct: 1486 TNIPGISVAGSTGMFFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFS 1545

Query: 951  PSVAGE 956
            PS A +
Sbjct: 1546 PSAASD 1551



 Score =  213 bits (541), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 105/152 (69%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQNTV+ EDQE+VNVYYEMPDFD TRISPWLLRIELDRK MTD+K
Sbjct: 1164 LRKVTANTAIYYDPNPQNTVVEEDQEWVNVYYEMPDFDVTRISPWLLRIELDRKHMTDRK 1223

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1224 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1255

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++K Q++E+ VDKM+DD+FLRCIE
Sbjct: 1256 RIRIMNSDENKFQEDEEVVDKMDDDVFLRCIE 1287



 Score =  160 bits (406), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 89/113 (78%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 769  VAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAG 828

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            LTP+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 829  LTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSI 881



 Score =  154 bits (388), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 81/170 (47%), Positives = 104/170 (61%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE VE Q + T+  SH+ FE
Sbjct: 856 GYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVEFQNVATLKPSHRAFE 915

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD +NER LRR   EDV++++M +  V S L                         
Sbjct: 916 KKFKFDCTNERALRRTLQEDVVKDVMTNAHVQSSL------------------------- 950

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     E+E+EK+ EDRE LR IF +G+S VVLPCNL  +I+  Q+
Sbjct: 951 ----------EREFEKMKEDREILRAIFPTGDSKVVLPCNLARMIWNAQK 990



 Score =  129 bits (324), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 67/77 (87%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHGINRQDTG LM+CSFEETV
Sbjct: 1375 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETV 1434

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+A++H E DPM+G
Sbjct: 1435 DVLMEASSHGECDPMKG 1451



 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE IILGMD KFARP+WM+VTVLPVPPL+VRPAVVM GSARNQ+ + + L
Sbjct: 229 EEDIILGMDSKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKL 278



 Score = 71.2 bits (173), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFLD+
Sbjct: 513  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLDR 555


>gi|6677795|ref|NP_033115.1| DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]
 gi|200794|gb|AAA40071.1| RNA polymerase II [Mus musculus]
          Length = 1932

 Score =  617 bits (1591), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 321/529 (60%), Positives = 385/529 (72%), Gaps = 64/529 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPL---------ATGMMGGPAGMFFGSAATPSSIPGP---PAW 1441
            CK G+EIP           +GM  G AG F  SAA+ +S   P   PAW
Sbjct: 1480 CKYGMEIPTNIPGLGAAGRSGMTPGAAG-FSPSAASDASGFSPGYSPAW 1527



 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  209 bits (533), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 132/325 (40%), Positives = 187/325 (57%), Gaps = 38/325 (11%)

Query: 667  IFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISE 720
            IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  I +
Sbjct: 1246 IFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG--IEQ 1303

Query: 721  LEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNENLR 771
            + K +  L + D +    I   GE       +L  + + ++ +L    +      + ++ 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 772  FLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQD 831
             +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQD
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 832  TGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDG 891
            TG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYG 1483

Query: 892  IEIPL---------ATGMMGGPAGMFFGSAATPSSMSPQMTP-WAQSTPAYNA------- 934
            +EIP           +GM  G AG    +A+  S  SP  +P W+ +  +  +       
Sbjct: 1484 MEIPTNIPGLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPY 1543

Query: 935  LMSPGAAMTPG----GPGFSPSVAG 955
            + SPG AM+P      P + P   G
Sbjct: 1544 IPSPGGAMSPSYSPTSPAYEPRSPG 1568



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|293340189|ref|XP_002724554.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
            [Rattus norvegicus]
 gi|293351610|ref|XP_002727769.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
            [Rattus norvegicus]
          Length = 1932

 Score =  617 bits (1590), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 321/529 (60%), Positives = 385/529 (72%), Gaps = 64/529 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPL---------ATGMMGGPAGMFFGSAATPSSIPGP---PAW 1441
            CK G+EIP           +GM  G AG F  SAA+ +S   P   PAW
Sbjct: 1480 CKYGMEIPTNIPGLGAAGRSGMTPGAAG-FSPSAASDASGFSPGYSPAW 1527



 Score =  612 bits (1579), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 295/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH+V   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  209 bits (533), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 132/325 (40%), Positives = 187/325 (57%), Gaps = 38/325 (11%)

Query: 667  IFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISE 720
            IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  I +
Sbjct: 1246 IFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG--IEQ 1303

Query: 721  LEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNENLR 771
            + K +  L + D +    I   GE       +L  + + ++ +L    +      + ++ 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 772  FLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQD 831
             +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQD
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 832  TGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDG 891
            TG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYG 1483

Query: 892  IEIPL---------ATGMMGGPAGMFFGSAATPSSMSPQMTP-WAQSTPAYNA------- 934
            +EIP           +GM  G AG    +A+  S  SP  +P W+ +  +  +       
Sbjct: 1484 MEIPTNIPGLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPY 1543

Query: 935  LMSPGAAMTPG----GPGFSPSVAG 955
            + SPG AM+P      P + P   G
Sbjct: 1544 IPSPGGAMSPSYSPTSPAYEPRSPG 1568



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|390462987|ref|XP_003732945.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
            [Callithrix jacchus]
          Length = 1899

 Score =  616 bits (1589), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 321/529 (60%), Positives = 385/529 (72%), Gaps = 64/529 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 990  VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1049

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1050 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1102

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1103 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1146

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1147 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1206

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1207 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1266

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1267 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1326

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1327 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1386

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1387 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1446

Query: 1405 CKDGIEIPL---------ATGMMGGPAGMFFGSAATPSSIPGP---PAW 1441
            CK G+EIP           +GM  G AG F  SAA+ +S   P   PAW
Sbjct: 1447 CKYGMEIPTNIPGLGAAGRSGMTPGAAG-FSPSAASDASGFSPGYSPAW 1494



 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 526 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 585

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 586 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 645

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 646 WLLIEG----------------------------------------------HTIGIGDS 659

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 660 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 719

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 720 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 779

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 780 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 839

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 840 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 899

Query: 494 NV 495
            +
Sbjct: 900 TL 901



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1133 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1192

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1193 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1224

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1225 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1256



 Score =  209 bits (533), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 132/325 (40%), Positives = 187/325 (57%), Gaps = 38/325 (11%)

Query: 667  IFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISE 720
            IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  I +
Sbjct: 1213 IFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG--IEQ 1270

Query: 721  LEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNENLR 771
            + K +  L + D +    I   GE       +L  + + ++ +L    +      + ++ 
Sbjct: 1271 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1330

Query: 772  FLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQD 831
             +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQD
Sbjct: 1331 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1390

Query: 832  TGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDG 891
            TG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G
Sbjct: 1391 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYG 1450

Query: 892  IEIPL---------ATGMMGGPAGMFFGSAATPSSMSPQMTP-WAQSTPAYNA------- 934
            +EIP           +GM  G AG    +A+  S  SP  +P W+ +  +  +       
Sbjct: 1451 MEIPTNIPGLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPY 1510

Query: 935  LMSPGAAMTPG----GPGFSPSVAG 955
            + SPG AM+P      P + P   G
Sbjct: 1511 IPSPGGAMSPSYSPTSPAYEPRSPG 1535



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 740  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 799

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 800  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 850



 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 825 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 884

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +ELE                        
Sbjct: 885 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 920

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 921 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 959



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1344 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1403

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1404 DVLMEAAAHGESDPMKG 1420



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 198 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 247



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 482  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 524


>gi|38232319|gb|AAR14995.1| RNA polymerase II largest subunit [Mesocyclops edax]
          Length = 445

 Score =  616 bits (1588), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 299/418 (71%), Positives = 331/418 (79%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +E MM ++MFLP WDGK+P P I+KPKPLWTGKQ+F+LIIPGNVN  R H+THPD+E++G
Sbjct: 17  KEDMMTLVMFLPTWDGKLPIPAIIKPKPLWTGKQLFTLIIPGNVNCERLHATHPDEENNG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY WISPGDT+V++EHG LLMGILCKKSLG S+ SLLH+  LE GHE  GRFYGNIQTVV
Sbjct: 77  PYHWISPGDTRVLIEHGELLMGILCKKSLGASAASLLHVSQLENGHEENGRFYGNIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 137 NNWLLLEG----------------------------------------------HSIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADP TY +I   IKKAK++VIEVI KAH+ +LE TPGNTLRQTFENQVNRILNDARD
Sbjct: 151 DTIADPATYADIIATIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SAK+SLTE+NN K MVVAGSKGS+IN+SQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGASAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV+YD TVRN+VGQ+IQ RYGEDGL  E +E Q I TV LS+  FE KY+FD +NER
Sbjct: 331 VMVNYDGTVRNAVGQMIQFRYGEDGLAPEVLEFQSIKTVQLSNAVFERKYKFDANNER 388



 Score =  169 bits (427), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 86/102 (84%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAV 343



 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/161 (51%), Positives = 106/161 (65%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRN+VGQ+IQ RYGEDGL  E +E Q I TV LS+  FE
Sbjct: 318 GYIQRRLIKAMESVMVNYDGTVRNAVGQMIQFRYGEDGLAPEVLEFQSIKTVQLSNAVFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KY+FD +NER ++++F +DVL+E+ GS +VISE+E                        
Sbjct: 378 RKYKFDANNERYVKKLFTDDVLKEIFGSNEVISEIE------------------------ 413

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                      +EWE+LC+DRE+LR+IF +G + VVLPCNL
Sbjct: 414 -----------REWEQLCKDRESLRQIFPTGNNKVVLPCNL 443


>gi|31127020|gb|AAF26631.2|AF138981_1 RNA polymerase II largest subunit [Endeis laevis]
          Length = 445

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 298/418 (71%), Positives = 333/418 (79%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMM +LMFLP+W+G+MPQP ILKPKPLWTGKQ+FSLIIPG VN  RTHSTHPD+ED G
Sbjct: 17  RDQMMTLLMFLPVWNGRMPQPSILKPKPLWTGKQLFSLIIPGTVNCIRTHSTHPDEEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
            Y+WISPGDTKV++EHG LL GI+CKK++G+S GSL+HI   ELGHEV G FYG+IQTVV
Sbjct: 77  DYKWISPGDTKVLIEHGDLLSGIICKKTVGSSGGSLMHIVMAELGHEVAGLFYGHIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 137 NNWLLLEG----------------------------------------------HSIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD QTY +I+  IKKAK DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 151 DTIADHQTYQDIRNTIKKAKNDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+E+NN KAMVV+GSKGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGSSAQKSLSEFNNFKAMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYL+GLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDYGPESRGFVENSYLSGLTPAEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VM+ YD TVRNSV QLIQLRYGEDGL G  VE Q + ++  S + F  +++FDPSNER
Sbjct: 331 VMITYDGTVRNSVQQLIQLRYGEDGLDGTMVEFQSLPSIKPSDRVFHKQFKFDPSNER 388



 Score =  170 bits (431), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 84/133 (63%), Positives = 98/133 (73%), Gaps = 4/133 (3%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL+GLT
Sbjct: 233  GSKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLSGLT 292

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  I YD   +N+V    Q+ + 
Sbjct: 293  PAEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMITYDGTVRNSV----QQLIQ 348

Query: 1120 VYYEMPDFDPTRI 1132
            + Y     D T +
Sbjct: 349  LRYGEDGLDGTMV 361



 Score =  153 bits (386), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/161 (51%), Positives = 98/161 (60%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVM+ YD TVRNSV QLIQLRYGEDGL G  VE Q + ++  S + F 
Sbjct: 318 GYIQRRLIKAMESVMITYDGTVRNSVQQLIQLRYGEDGLDGTMVEFQSLPSIKPSDRVFH 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FDPSNER LRRIF EDV++EL  SG+ I  LEK                       
Sbjct: 378 KQFKFDPSNERYLRRIFTEDVVKELTSSGNAIGLLEK----------------------- 414

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                       E+EKL  DRE LR +F +G+S VVLPCNL
Sbjct: 415 ------------EFEKLKRDREVLRSVFPTGDSKVVLPCNL 443


>gi|426383941|ref|XP_004058535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
            [Gorilla gorilla gorilla]
          Length = 1883

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 321/529 (60%), Positives = 385/529 (72%), Gaps = 64/529 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479

Query: 1405 CKDGIEIPL---------ATGMMGGPAGMFFGSAATPSSIPGP---PAW 1441
            CK G+EIP           +GM  G AG F  SAA+ +S   P   PAW
Sbjct: 1480 CKYGMEIPTNIPGLGAAGRSGMTPGAAG-FSPSAASDASGFSPGYSPAW 1527



 Score =  611 bits (1575), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  211 bits (538), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  209 bits (532), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 107/201 (53%), Positives = 136/201 (67%), Gaps = 21/201 (10%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG L
Sbjct: 1368 VLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPL 1427

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
            M+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G+EIP
Sbjct: 1428 MKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 1487

Query: 896  L---------ATGMMGGPAGMFFGSAATPSSMSPQMTP-WAQSTPAYNA-------LMSP 938
                       +GM  G AG    +A+  S  SP  +P W+ +  +  +       + SP
Sbjct: 1488 TNIPGLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSP 1547

Query: 939  GAAMTPG----GPGFSPSVAG 955
            G AM+P      P + P   G
Sbjct: 1548 GGAMSPSYSPTSPAYEPRSPG 1568



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773  GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 833  PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +EL                         
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNEL------------------------- 952

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     E+E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 953 ----------EREFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|443728942|gb|ELU15060.1| hypothetical protein CAPTEDRAFT_170227 [Capitella teleta]
          Length = 1916

 Score =  614 bits (1583), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 298/418 (71%), Positives = 331/418 (79%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +  MMN+LM+LP W+G+MPQP ILKPKPLWTGKQVFSLIIPG VN  RTHSTHPD+ED G
Sbjct: 555 KRDMMNLLMYLPTWNGRMPQPAILKPKPLWTGKQVFSLIIPGRVNCIRTHSTHPDEEDKG 614

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VE G L+ GILCKK+LG SSGSL+H+ FLE G E  G FYGNIQTV+
Sbjct: 615 PYKWISPGDTKVLVEDGELICGILCKKTLGASSGSLMHVVFLEQGFEQAGDFYGNIQTVI 674

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 675 NNWLLLEG----------------------------------------------HSIGIG 688

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY +IQ AIKKAK DVI+VI+KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 689 DTIADPQTYSDIQNAIKKAKLDVIDVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARD 748

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG +A+KSL+E+N+ KAMVVAGSKG+ INISQVIACVGQQNVEGKRIPFGFR RTLPHF
Sbjct: 749 KTGSTAQKSLSEFNSFKAMVVAGSKGNKINISQVIACVGQQNVEGKRIPFGFRHRTLPHF 808

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KAMES
Sbjct: 809 IKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLMKAMES 868

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV YD TVRN + QLIQL YGEDGL GE VE Q++ ++  SH  F+  +RFDP+NER
Sbjct: 869 VMVKYDGTVRNQIEQLIQLTYGEDGLAGEWVEFQQLPSLKPSHAAFKANFRFDPTNER 926



 Score =  613 bits (1580), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 321/520 (61%), Positives = 382/520 (73%), Gaps = 54/520 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LSKQAN NATLL + LVRSTLC+K V E +RLSS+AFEWL+GEIE RFQQA   
Sbjct: 1021 VKGDDFLSKQANNNATLLIKSLVRSTLCSKRVIEEFRLSSQAFEWLLGEIEARFQQAMTQ 1080

Query: 1010 --QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
              ++   +  Q++ G+                    P ++  +   + AG++        
Sbjct: 1081 PGEMCGALAAQSL-GE--------------------PATQMTLNTFHYAGVSAKNVTLGV 1119

Query: 1068 MGGREGLIDTAVKTAETVNVLVFLF-----------------------QVTANTAIYYDP 1104
               +E  I    K  +T ++ VFL                        +VTANTAIYYD 
Sbjct: 1120 PRLKE--IINVSKKPKTPSLTVFLTGKAAKDAEKAKDVLCRLEHTTLRKVTANTAIYYDA 1177

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DP N+VI EDQ++V++YYEMPDFD +RISPWLLRIELDRKRMTDKKLTME ISEKI AGF
Sbjct: 1178 DPMNSVICEDQDWVSIYYEMPDFDVSRISPWLLRIELDRKRMTDKKLTMEQISEKITAGF 1237

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMN+D++K  DEE  VDKMEDD+FLRCIEANML+DM+LQ
Sbjct: 1238 GDDLNCIFNDDNAEKLVLRIRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQ 1296

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            G+E+I KVYMHLP TD KKRI +T SGEFKAI +W+LETDGT L++VLSE+DVDP+RT +
Sbjct: 1297 GLESIAKVYMHLPTTDDKKRIELTPSGEFKAIQEWILETDGTGLIQVLSEKDVDPIRTTT 1356

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDI EIF  LG+EAVRKS+EKEM  V+ F G YVNYRHLALLCD+MTAKGHLMAITRHGI
Sbjct: 1357 NDIVEIFSCLGVEAVRKSIEKEMFNVISFDGSYVNYRHLALLCDIMTAKGHLMAITRHGI 1416

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQ+TG L RCSFEETVD+LM+AA+H E DPM+GVSENI++GQL R+GTGCFDLLLDAEK
Sbjct: 1417 NRQETGCLARCSFEETVDILMEAASHNEVDPMKGVSENIMLGQLARIGTGCFDLLLDAEK 1476

Query: 1405 CKDGIEIPLATGMMGGPAGMFFGS-AATPSSIPGPPAWYP 1443
            CK G+EIP   G   G AGMFFG+ A++PSS  G P   P
Sbjct: 1477 CKHGMEIPTHIGAGMG-AGMFFGAGASSPSSNMGSPQMTP 1515



 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 117/164 (71%), Positives = 134/164 (81%), Gaps = 8/164 (4%)

Query: 772  FLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQD 831
            F C  + V +VRKS+EKEM  V+ F G YVNYRHLALLCD+MTAKGHLMAITRHGINRQ+
Sbjct: 1363 FSC--LGVEAVRKSIEKEMFNVISFDGSYVNYRHLALLCDIMTAKGHLMAITRHGINRQE 1420

Query: 832  TGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDG 891
            TG L RCSFEETVD+LM+AA+H E DPM+GVSENI++GQL R+GTGCFDLLLDAEKCK G
Sbjct: 1421 TGCLARCSFEETVDILMEAASHNEVDPMKGVSENIMLGQLARIGTGCFDLLLDAEKCKHG 1480

Query: 892  IEIPLATGMMGGPAGMFFGS-AATPSSM--SPQMTPWA--QSTP 930
            +EIP   G   G AGMFFG+ A++PSS   SPQMTPW   QSTP
Sbjct: 1481 MEIPTHIGAGMG-AGMFFGAGASSPSSNMGSPQMTPWGHDQSTP 1523



 Score =  199 bits (506), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/152 (67%), Positives = 113/152 (74%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYD DP N+VI EDQ++V++YYEMPDFD +RISPWLLRIELDRKRMTDKK
Sbjct: 1164 LRKVTANTAIYYDADPMNSVICEDQDWVSIYYEMPDFDVSRISPWLLRIELDRKRMTDKK 1223

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME ISEKI AGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1224 LTMEQISEKITAGFG----------------------------DDLNCIFNDDNAEKLVL 1255

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN+D++K  DEE  VDKMEDD+FLRCIE
Sbjct: 1256 RIRIMNTDENKADDEEQ-VDKMEDDVFLRCIE 1286



 Score =  167 bits (424), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 79/113 (69%), Positives = 89/113 (78%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   N+   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 769  VAGSKGNKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAG 828

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            LTP+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N +
Sbjct: 829  LTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLMKAMESVMVKYDGTVRNQI 881



 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 102/170 (60%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAMESVMV YD TVRN + QLIQL YGEDGL GE VE Q++ ++  SH  F+
Sbjct: 856 GYIQRRLMKAMESVMVKYDGTVRNQIEQLIQLTYGEDGLAGEWVEFQQLPSLKPSHAAFK 915

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +RFDP+NERQ+++  +E+V++ +      +SE+                         
Sbjct: 916 ANFRFDPTNERQMKKFLSEEVIKNIREDAKGLSEI------------------------- 950

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     E EW++LCEDR A+R++F +G S +VLPCNL  +I+  Q+
Sbjct: 951 ----------ETEWKQLCEDRSAIRQVFPTGNSKIVLPCNLQRLIWNAQK 990



 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 77/104 (74%), Gaps = 4/104 (3%)

Query: 493  RNVSSLRRVVNSKPLLIGCWKL----TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 548
            ++V  +R   N    +  C  +     S+EKEM  V+ F G YVNYRHLALLCD+MTAKG
Sbjct: 1347 KDVDPIRTTTNDIVEIFSCLGVEAVRKSIEKEMFNVISFDGSYVNYRHLALLCDIMTAKG 1406

Query: 549  HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 592
            HLMAITRHGINRQ+TG L RCSFEETVD+LM+AA+H E DPM+G
Sbjct: 1407 HLMAITRHGINRQETGCLARCSFEETVDILMEAASHNEVDPMKG 1450



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 45/50 (90%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EES I+GMDPK+ARPDWM++ VLPVPPLSVRPAVVM+GSARNQ+ + + L
Sbjct: 229 EESNIIGMDPKWARPDWMIIQVLPVPPLSVRPAVVMYGSARNQDDLTHKL 278



 Score = 68.6 bits (166), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/46 (73%), Positives = 36/46 (78%)

Query: 1497 RQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            R IITPQ NRPVMGIVQDTLTAVRKMTKRDVFL+K      + Y P
Sbjct: 521  RMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLEKRDMMNLLMYLP 566


>gi|296476824|tpg|DAA18939.1| TPA: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Bos
           taurus]
          Length = 1323

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  325 bits (834), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 177/324 (54%), Positives = 220/324 (67%), Gaps = 53/324 (16%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  + + AE    ++       L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299

Query: 1225 GIEAIGKVYM--HLPQTDSKKRII 1246
            GIE I KV +  HLPQTD+KK+II
Sbjct: 1300 GIEQISKVSVTCHLPQTDNKKKII 1323



 Score =  211 bits (538), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289



 Score =  161 bits (407), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 85/102 (83%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAM
Sbjct: 782  SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM 841

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 842  GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  151 bits (382), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +EL                         
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNEL------------------------- 952

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     E+E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 953 ----------EREFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|38232259|gb|AAR14965.1| RNA polymerase II largest subunit [Eurypauropus spinosus]
          Length = 445

 Score =  611 bits (1576), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 303/452 (67%), Positives = 345/452 (76%), Gaps = 56/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMMN+LMFLPIWDGKMPQP ILKPK LWTGKQ+FSLIIPGNVN+ RTHSTHPD+ED G
Sbjct: 17  KDQMMNLLMFLPIWDGKMPQPAILKPKALWTGKQLFSLIIPGNVNIVRTHSTHPDEEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           P++WISPGDTKV+VEHG L+ GI+C K++G S+GSLLHI  LE+G +V G FY +IQTVV
Sbjct: 77  PFRWISPGDTKVLVEHGELICGIICNKTVGRSAGSLLHIVMLEMGWQVAGLFYSHIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLL+G                                              HSIGI 
Sbjct: 137 NNWLLLDG----------------------------------------------HSIGIN 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           D IAD +TY++IQ  IKKAK DV+E+I++AHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 151 DAIADQETYIDIQETIKKAKIDVVEIIERAHNDELEPTPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+E+NN K+MVV+GSKGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV YD TVRNS GQ+IQ RYGEDG+   AVE Q + T+  S K FE K++FD +NER  
Sbjct: 331 VMVTYDGTVRNSAGQMIQFRYGEDGVDACAVEFQNLATLKPSDKAFEQKFKFDATNER-- 388

Query: 492 LRNVSSLRRVVNS---KPLLIGCWKLTSVEKE 520
                 LRRV N    K +L     ++ +E E
Sbjct: 389 -----YLRRVFNESIVKEILGSAMAVSQLEAE 415



 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 86/102 (84%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+ 
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTVRNSA 343



 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 100/161 (62%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD TVRNS GQ+IQ RYGEDG+   AVE Q + T+  S K FE
Sbjct: 318 GYIQRRLIKAMESVMVTYDGTVRNSAGQMIQFRYGEDGVDACAVEFQNLATLKPSDKAFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD +NER LRR+FNE +++E++GS   +S+LE E      W+QLR+          
Sbjct: 378 QKFKFDATNERYLRRVFNESIVKEILGSAMAVSQLEAE------WEQLRK---------- 421

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                              DR+ LR+IF  G++ +VLPCN+
Sbjct: 422 -------------------DRDILRQIFPKGDNKIVLPCNM 443


>gi|321459276|gb|EFX70331.1| hypothetical protein DAPPUDRAFT_328199 [Daphnia pulex]
          Length = 1457

 Score =  611 bits (1576), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 299/452 (66%), Positives = 348/452 (76%), Gaps = 57/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMP+P ILKP+PLWTGKQ+F+LIIPGNVNM  THSTHPDDED G
Sbjct: 532 KEQMMNLLMFLPTWDGKMPKPAILKPRPLWTGKQLFTLIIPGNVNMMITHSTHPDDEDEG 591

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++E+G L+MGILCKK+LG S+ SLLHI F+ELGHEVCGRFYGNIQTV+
Sbjct: 592 PYKWISPGDTKVMIENGELVMGILCKKTLGASAASLLHIIFMELGHEVCGRFYGNIQTVI 651

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 652 NNWLLYEG----------------------------------------------HSIGIG 665

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           D + D QTY++IQ  I+KAKEDVIEVIQK+ N +LEPTPGNTL+QT ENQVNRIL DAR+
Sbjct: 666 DMLVDRQTYMDIQATIEKAKEDVIEVIQKSRNDELEPTPGNTLQQTLENQVNRILIDARN 725

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           +TGGSAK SLTE+NNLKAMVVAGS GSN+NISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 726 ETGGSAKNSLTEFNNLKAMVVAGSSGSNVNISQVIACVGQQNVEGKRIPFGFRKRTLPHF 785

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDD+GPESRGFVENSY++GLTPSEF+FHAM  R+ LIDTAVKTA TGYIQR LIKAMES
Sbjct: 786 IKDDFGPESRGFVENSYVSGLTPSEFYFHAM-DRKALIDTAVKTANTGYIQRSLIKAMES 844

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNS G+++Q  YG DGL  E+VE Q++ TV LS++ FE K++FDPSNE   
Sbjct: 845 VMVHYDGTVRNSAGRILQFSYGGDGLSAESVELQKMPTVNLSNEAFEKKFKFDPSNE--- 901

Query: 492 LRNVSSLRRVVN---SKPLLIGCWKLTSVEKE 520
               + +RR+ N   ++ L+     +T +E E
Sbjct: 902 ----NYVRRIFNEEITRELISSAEVITEIEHE 929



 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 295/469 (62%), Positives = 351/469 (74%), Gaps = 32/469 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V GED+LS QAN+NATLLFQCLVRSTLC+K +AE YRLSSEAFEWL+G+IE RFQQAQ  
Sbjct: 997  VVGEDKLSIQANQNATLLFQCLVRSTLCSKRIAEKYRLSSEAFEWLIGKIETRFQQAQAQ 1056

Query: 1011 ---VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL-----TPSE 1062
               ++  +  Q++ G+R P      T  HF        + G      +  +     TPS 
Sbjct: 1057 PGEMVGALAAQSL-GER-PTKMTVNTF-HFAGVSSKNVTLGVARLKEIINISKSPKTPSM 1113

Query: 1063 FFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQE 1116
              F        L   A + AE   NVL       L  VT NTAIYYDPDP NTVI EDQE
Sbjct: 1114 TVF--------LKGQAARDAEKAKNVLCRLEHTTLRMVTKNTAIYYDPDPLNTVILEDQE 1165

Query: 1117 FVNVYYEMPDFDPTRIS--PWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFND 1174
            FVNVYY+ P FDPTRIS  PWLLRIELDRKRMTDK+LTM+ I+EK+NA FG+ L  IF++
Sbjct: 1166 FVNVYYQRPHFDPTRISISPWLLRIELDRKRMTDKRLTMKQIAEKVNAEFGNSLKIIFSN 1225

Query: 1175 DNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYM 1234
            D+AEKLVLRIRI+   D    +EE  V KMEDD+FLRC EANMLSDMTLQG+E+I KV M
Sbjct: 1226 DSAEKLVLRIRIIMDSDDSSDEEEQ-VAKMEDDIFLRCFEANMLSDMTLQGMESIEKVSM 1284

Query: 1235 HLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVL 1294
            +LP+TD KKRI++TE+GEF+AIA+W+LETDGT LM+VLSERDVDPVRT+SNDI EIF VL
Sbjct: 1285 YLPKTDEKKRIVVTETGEFEAIAEWILETDGTQLMRVLSERDVDPVRTYSNDIREIFSVL 1344

Query: 1295 GIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1354
            G+EA RK++EKEMN +LQFYGL VN+RHLALLCDVMTA G LM I+   I+RQDT ALM+
Sbjct: 1345 GVEAARKALEKEMNNLLQFYGLNVNHRHLALLCDVMTATGQLMPIS--SIDRQDTSALMK 1402

Query: 1355 CSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1403
            C+ +ETV VL++AA HAE DP+RGVS N+I+GQLPRMGTGCFDL+LDAE
Sbjct: 1403 CTVKETVSVLLEAAGHAEIDPLRGVSVNLILGQLPRMGTGCFDLILDAE 1451



 Score =  165 bits (417), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 99/120 (82%), Gaps = 2/120 (1%)

Query: 767  NENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHG 826
            + ++R +  ++ V + RK++EKEMN +LQFYGL VN+RHLALLCDVMTA G LM I+   
Sbjct: 1334 SNDIREIFSVLGVEAARKALEKEMNNLLQFYGLNVNHRHLALLCDVMTATGQLMPIS--S 1391

Query: 827  INRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 886
            I+RQDT ALM+C+ +ETV VL++AA HAE DP+RGVS N+I+GQLPRMGTGCFDL+LDAE
Sbjct: 1392 IDRQDTSALMKCTVKETVSVLLEAAGHAEIDPLRGVSVNLILGQLPRMGTGCFDLILDAE 1451



 Score =  164 bits (416), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 110/170 (64%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQR LIKAMESVMVHYD TVRNS G+++Q  YG DGL  E+VE Q++ TV LS++ FE
Sbjct: 832 GYIQRSLIKAMESVMVHYDGTVRNSAGRILQFSYGGDGLSAESVELQKMPTVNLSNEAFE 891

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDPSNE  +RRIFNE++ REL+ S +VI+E+E E                      
Sbjct: 892 KKFKFDPSNENYVRRIFNEEITRELISSAEVITEIEHE---------------------- 929

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE+L +DREALR+IF +GE+ VVLPCNL  +I+ +Q+
Sbjct: 930 -------------WEQLYKDREALRQIFPTGENKVVLPCNLQRMIWDVQK 966



 Score =  154 bits (389), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/154 (57%), Positives = 101/154 (65%), Gaps = 31/154 (20%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTR--ISPWLLRIELDRKRMTD 1586
            L  VT NTAIYYDPDP NTVI EDQEFVNVYY+ P FDPTR  ISPWLLRIELDRKRMTD
Sbjct: 1140 LRMVTKNTAIYYDPDPLNTVILEDQEFVNVYYQRPHFDPTRISISPWLLRIELDRKRMTD 1199

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            K+LTM+ I+EK+NA FG+ L                              IF++D+AEKL
Sbjct: 1200 KRLTMKQIAEKVNAEFGNSLKI----------------------------IFSNDSAEKL 1231

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            VLRIRI+   D    +EE  V KMEDD+FLRC E
Sbjct: 1232 VLRIRIIMDSDDSSDEEEQ-VAKMEDDIFLRCFE 1264



 Score =  149 bits (377), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/101 (69%), Positives = 83/101 (82%), Gaps = 1/101 (0%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD+GPESRGFVENSY++GLTPSEF+FHAM
Sbjct: 757  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDFGPESRGFVENSYVSGLTPSEFYFHAM 816

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
              R+ LIDTAVKTA T  +   L +   +  ++YD   +N+
Sbjct: 817  -DRKALIDTAVKTANTGYIQRSLIKAMESVMVHYDGTVRNS 856



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 64/77 (83%), Gaps = 2/77 (2%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++EKEMN +LQFYGL VN+RHLALLCDVMTA G LM I+   I+RQDT ALM+C+ +ETV
Sbjct: 1352 ALEKEMNNLLQFYGLNVNHRHLALLCDVMTATGQLMPIS--SIDRQDTSALMKCTVKETV 1409

Query: 576  DVLMDAAAHAEADPMRG 592
             VL++AA HAE DP+RG
Sbjct: 1410 SVLLEAAGHAEIDPLRG 1426



 Score = 74.7 bits (182), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 38/46 (82%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
           E+ +ILGMDPK+ARPDWM++T LPV P +VRPAVVMHGSA  Q  +
Sbjct: 213 EDCLILGMDPKYARPDWMIITCLPVSPPAVRPAVVMHGSASKQNDL 258



 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 37/43 (86%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENI +TPRQIITPQ N+PVMGIVQDTL    K+TKRDVFL+K
Sbjct: 490  VENILLTPRQIITPQANKPVMGIVQDTLVGTYKLTKRDVFLEK 532


>gi|350590849|ref|XP_003483150.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sus scrofa]
          Length = 1092

 Score =  611 bits (1575), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  160 bits (406), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 85/102 (83%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAM
Sbjct: 782  SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM 841

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 842  GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +EL                         
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNEL------------------------- 952

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     E+E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 953 ----------EREFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|31127008|gb|AAK11873.2| RNA polymerase II largest subunit [Bothropolys multidentatus]
          Length = 624

 Score =  610 bits (1574), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 309/456 (67%), Positives = 346/456 (75%), Gaps = 56/456 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMMN+LMFLPIWDGKMP P ILKPKPLWTGKQ+FSLIIPGNVN  R H +HPDDED  
Sbjct: 196 KDQMMNLLMFLPIWDGKMPMPAILKPKPLWTGKQLFSLIIPGNVNCIRAHYSHPDDEDDS 255

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+ GILCKK+LGTS+GSLLHI  LELG  V G FY +IQ V+
Sbjct: 256 PYKWISPGDTKVLVEHGELICGILCKKTLGTSAGSLLHIVMLELGWGVAGLFYWHIQMVI 315

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGI 
Sbjct: 316 NNWLLLEG----------------------------------------------HSIGID 329

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY++IQ +IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 330 DTIADPQTYIDIQNSIKKAKQDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARD 389

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+E+NN K+MVV+G+KG  INISQVI  VGQQNVEGKRIPFGF KRTLPHF
Sbjct: 390 KTGSSAEKSLSEFNNFKSMVVSGAKGXXINISQVIXXVGQQNVEGKRIPFGFCKRTLPHF 449

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IK+DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 450 IKNDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 509

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           +M  YD T+RNSVGQLIQLRYGEDGL G AVE Q + T+  S+K FE K++FD SNER  
Sbjct: 510 IMATYDGTIRNSVGQLIQLRYGEDGLDGGAVEFQALPTLKPSNKAFEKKFKFDVSNER-- 567

Query: 492 LRNVSSLRRVVNS---KPLLIGCWKLTSVEKEMNTV 524
                 L+RV N    K L+     +  +EKE  T+
Sbjct: 568 -----QLKRVFNEDIVKDLMGSAQIVNELEKEWETL 598



 Score =  166 bits (419), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/161 (53%), Positives = 103/161 (63%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMES+M  YD T+RNSVGQLIQLRYGEDGL G AVE Q + T+  S+K FE
Sbjct: 497 GYIQRRLIKAMESIMATYDGTIRNSVGQLIQLRYGEDGLDGGAVEFQALPTLKPSNKAFE 556

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD SNERQL+R+FNED++++LMGS  +++ELEKE                      
Sbjct: 557 KKFKFDVSNERQLKRVFNEDIVKDLMGSAQIVNELEKE---------------------- 594

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                        WE L  DRE LR IF  G+S VVLPCNL
Sbjct: 595 -------------WETLKRDRELLRNIFPKGDSKVVLPCNL 622



 Score =  157 bits (397), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 89/180 (49%), Positives = 111/180 (61%), Gaps = 11/180 (6%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVI  VGQQNVEGKRIPFGF KRTLPHFIK+DYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 421  SQVIXXVGQQNVEGKRIPFGFCKRTLPHFIKNDYGPESRGFVENSYLAGLTPSEFFFHAM 480

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   +    YD   +N+V     + + + Y     D
Sbjct: 481  GGREGLIDTAVKTAETGYIQRRLIKAMESIMATYDGTIRNSV----GQLIQLRYGEDGLD 536

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN 1188
               +    L       +  +KK   +  +E+        L  +FN+D  + L+   +I+N
Sbjct: 537  GGAVEFQALPTLKPSNKAFEKKFKFDVSNER-------QLKRVFNEDIVKDLMGSAQIVN 589



 Score = 77.0 bits (188), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 40/43 (93%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +E + + PRQIITPQ+NRPVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 154  IEELAIVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLEK 196


>gi|38232223|gb|AAR14947.1| RNA polymerase II largest subunit [Allopauropus proximus]
          Length = 445

 Score =  610 bits (1573), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 299/442 (67%), Positives = 342/442 (77%), Gaps = 55/442 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMMN+LM+LPIWDGKMPQP IL+PKP+WTGKQ+F+LIIPG VN+ RTHSTHPD+ED G
Sbjct: 17  KDQMMNLLMYLPIWDGKMPQPAILRPKPMWTGKQLFTLIIPGTVNVIRTHSTHPDEEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+ GI+CKK++GTS+GSLLHI  LE+G  V G FY +IQTVV
Sbjct: 77  PYKWISPGDTKVLVEHGELISGIICKKTIGTSAGSLLHIVMLEMGWHVAGLFYSHIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N+WLLL+G                                              HSIGI 
Sbjct: 137 NSWLLLDG----------------------------------------------HSIGIN 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD +TY+EIQ  IKKAK DV+EVI++AHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 151 DTIADQETYIEIQETIKKAKYDVVEVIERAHNDELEPTPGNTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG +A+KSLTE+NN K+MVV+GSKGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGSNAQKSLTEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV YD T+RNS  Q++Q RYGEDGL    VE Q + T+  S + FE K++FD +NER  
Sbjct: 331 VMVTYDGTIRNSASQMVQFRYGEDGLDACHVEFQWLATLKPSDRSFEQKFKFDATNER-- 388

Query: 492 LRNVSSLRRVVNSKPL--LIGC 511
                 LRRV N   +  L+GC
Sbjct: 389 -----HLRRVFNESIVKELLGC 405



 Score =  170 bits (430), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 93/183 (50%), Positives = 116/183 (63%), Gaps = 13/183 (7%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 233  GSKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 292

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
            PSEFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N+      + V 
Sbjct: 293  PSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTIRNSA----SQMVQ 348

Query: 1120 VYYEMPDFDPTRIS-PWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAE 1178
              Y     D   +   WL  ++    R  ++K   +A +E+        L  +FN+   +
Sbjct: 349  FRYGEDGLDACHVEFQWLATLK-PSDRSFEQKFKFDATNER-------HLRRVFNESIVK 400

Query: 1179 KLV 1181
            +L+
Sbjct: 401  ELL 403



 Score =  144 bits (363), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 96/161 (59%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD T+RNS  Q++Q RYGEDGL    VE Q + T+  S + FE
Sbjct: 318 GYIQRRLIKAMESVMVTYDGTIRNSASQMVQFRYGEDGLDACHVEFQWLATLKPSDRSFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD +NER LRR+FNE +++EL+G    + +LE E      W+QLR+          
Sbjct: 378 QKFKFDATNERHLRRVFNESIVKELLGCATAVGQLESE------WEQLRK---------- 421

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                              DRE LR++F  GE+ +VLPCNL
Sbjct: 422 -------------------DREILRQVFPKGENKIVLPCNL 443


>gi|6624239|dbj|BAA88484.1| RNA polymerase II largest subunit [Eptatretus burgeri]
          Length = 595

 Score =  609 bits (1571), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 297/419 (70%), Positives = 331/419 (78%), Gaps = 46/419 (10%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           +MN+LM L  W+GKMPQP ILKP+PLWTGKQVFSLIIPG +N  RTHSTHPD+ED+GPY+
Sbjct: 59  VMNLLMCLSTWNGKMPQPAILKPQPLWTGKQVFSLIIPGRINCIRTHSTHPDNEDAGPYK 118

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            ISPGDTKVVVE G L+MGILCK+SLGTS+GSL+HICFLE+GH+V   FY NIQTV+NNW
Sbjct: 119 HISPGDTKVVVEDGELIMGILCKRSLGTSAGSLVHICFLEMGHDVTRLFYSNIQTVINNW 178

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL+EG                                              HSIGIGD+I
Sbjct: 179 LLIEG----------------------------------------------HSIGIGDSI 192

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD +TY +IQ  IKKAK DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKTG
Sbjct: 193 ADAKTYQDIQNTIKKAKHDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTG 252

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+EYNN K+MVVAGSKGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIKD
Sbjct: 253 SSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKD 312

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVMV
Sbjct: 313 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 372

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
            YD TVRN+  Q+IQLRYGEDGL  E VE Q + T+  S+K FE K++FD +NER  LR
Sbjct: 373 KYDGTVRNATNQVIQLRYGEDGLAAEHVEFQSLATLKPSNKAFEKKFKFDYTNERALLR 431



 Score =  160 bits (406), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 77/111 (69%), Positives = 87/111 (78%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 270  VAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAG 329

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQN 1108
            LTPSEFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N
Sbjct: 330  LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRN 380



 Score =  140 bits (352), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 101/170 (59%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRN+  Q+IQLRYGEDGL  E VE Q + T+  S+K FE
Sbjct: 357 GYIQRRLIKSMESVMVKYDGTVRNATNQVIQLRYGEDGLAAEHVEFQSLATLKPSNKAFE 416

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD +NER L R  +EDV+ E+M S  + + LE                        
Sbjct: 417 KKFKFDYTNERALLRCLHEDVVSEVMSSAHIQNCLE------------------------ 452

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +E+E++ +DRE LR +F +G+S VVLPCNL  +I+  Q+
Sbjct: 453 -----------REFEQIRDDREVLRAVFPTGDSKVVLPCNLQRMIWNAQK 491



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 48/59 (81%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+D +S+QA +NATLLF C VR+TLCT+ +AE +RLSSEAFEWL+GEIE +F  A V
Sbjct: 522  VKGDDPISRQAQQNATLLFNCHVRATLCTRRLAEEHRLSSEAFEWLLGEIEAKFNHAIV 580



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 38/45 (84%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVT 1533
            +  + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFLD+ T
Sbjct: 14   IHELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLDRGT 58


>gi|345309516|ref|XP_003428845.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1, partial
           [Ornithorhynchus anatinus]
          Length = 988

 Score =  609 bits (1571), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 293/422 (69%), Positives = 337/422 (79%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLI+PG++N  RTHSTHPDDEDSGPY
Sbjct: 526 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPY 585

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH+    FY NIQTV+NN
Sbjct: 586 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINN 645

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 646 WLLIEG----------------------------------------------HTIGIGDS 659

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 660 IADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 719

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 720 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 779

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 780 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 839

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 840 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 899

Query: 494 NV 495
            +
Sbjct: 900 TL 901



 Score =  160 bits (406), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 85/102 (83%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAM
Sbjct: 749  SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM 808

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 809  GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 850



 Score =  120 bits (302), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 79/105 (75%), Gaps = 5/105 (4%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 825 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 884

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDV-----ISELEKEMV 691
            K+RFD +NER LRR   E+++++++ +  +     + EL K++V
Sbjct: 885 KKFRFDYTNERALRRTLQEELVKDVLSNAHIESTTXVKELSKKLV 929



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 198 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 247



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 47/57 (82%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA 1009
            V GED LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA
Sbjct: 931  VNGEDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQA 987



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 482  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 524


>gi|520517|gb|AAA50229.1| RNA polymerase II, largest subunit, partial [Ilyanassa obsoleta]
          Length = 1343

 Score =  609 bits (1571), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 296/416 (71%), Positives = 328/416 (78%), Gaps = 46/416 (11%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           QMM++LMFLP WDG+MPQP I+KP+PLWTGKQ+FSL+IPG VN+ RTHSTHPD EDSGPY
Sbjct: 473 QMMHLLMFLPTWDGRMPQPAIIKPEPLWTGKQIFSLVIPGRVNVIRTHSTHPDGEDSGPY 532

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           +WISPGDTKV++E G L+ GILCKK+LGTS+GSL+HI FLE+G EV G  YGNIQTVVNN
Sbjct: 533 KWISPGDTKVLIEDGELISGILCKKTLGTSAGSLVHIVFLEMGFEVAGELYGNIQTVVNN 592

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              HSIGIGDT
Sbjct: 593 WLLIEG----------------------------------------------HSIGIGDT 606

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD QTY EIQ  I+KAK DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 607 IADQQTYHEIQETIRKAKADVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARDKT 666

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G  A+KSL+E+NN KAMVVAGSKGS INISQVIACVGQQN EGKRIPFGFR RTLPHFIK
Sbjct: 667 GSKAQKSLSEFNNFKAMVVAGSKGSKINISQVIACVGQQNAEGKRIPFGFRYRTLPHFIK 726

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM
Sbjct: 727 DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 786

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           V YD TVRN V QL+QL YGEDGL    VE Q + T+  S + FE ++RFDP++ER
Sbjct: 787 VKYDGTVRNQVEQLVQLGYGEDGLDACHVEFQSLPTLKPSTRAFERQFRFDPTDER 842



 Score =  536 bits (1382), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 279/424 (65%), Positives = 315/424 (74%), Gaps = 39/424 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V GED +SKQANENATLL +CL+RSTLC K VAE +RLS +AF WL+GEIE RFQQAQ  
Sbjct: 937  VEGEDMISKQANENATLLMKCLIRSTLCAKRVAEEHRLSEDAFNWLLGEIETRFQQAQAH 996

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 997  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINISKKPKTPSLT 1054

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
               YL G         A    E   D   +   T      L +VTANTAIYYDPDP NTV
Sbjct: 1055 --VYLNG--------PAARDAEKCKDVLCRLEHTT-----LRKVTANTAIYYDPDPMNTV 1099

Query: 1111 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNC 1170
            I EDQE+V++YYEMPDFD +RISPWLLRIELDRKRMTDKKLTME ISEKI AGFGDDLNC
Sbjct: 1100 IVEDQEWVSIYYEMPDFDASRISPWLLRIELDRKRMTDKKLTMEQISEKITAGFGDDLNC 1159

Query: 1171 IFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIG 1230
            IFNDDNAEKLVLRIRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQGIEAI 
Sbjct: 1160 IFNDDNAEKLVLRIRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGIEAIA 1219

Query: 1231 KVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEI 1290
            KVYMHLP TD KKRI ITE GEFKA+A+W+LETDG+SLMKVLSERDVDPVRT++NDI E+
Sbjct: 1220 KVYMHLPTTDDKKRIHITEEGEFKAVAEWILETDGSSLMKVLSERDVDPVRTYTNDIVEV 1279

Query: 1291 FQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTG 1350
            F  LGIEAVRK++E+EM  V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+TG
Sbjct: 1280 FATLGIEAVRKAIEREMVHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQETG 1339

Query: 1351 ALMR 1354
            AL R
Sbjct: 1340 ALAR 1343



 Score =  220 bits (560), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 111/152 (73%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP NTVI EDQE+V++YYEMPDFD +RISPWLLRIELDRKRMTDKK
Sbjct: 1080 LRKVTANTAIYYDPDPMNTVIVEDQEWVSIYYEMPDFDASRISPWLLRIELDRKRMTDKK 1139

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME ISEKI AGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1140 LTMEQISEKITAGFG----------------------------DDLNCIFNDDNAEKLVL 1171

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE
Sbjct: 1172 RIRIMNSDDSKMQDEEEVVDKMEDDVFLRCIE 1203



 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 88/113 (77%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQN EGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 685  VAGSKGSKINISQVIACVGQQNAEGKRIPFGFRYRTLPHFIKDDYGPESRGFVENSYLAG 744

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            LTPSEF+FHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N V
Sbjct: 745  LTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQV 797



 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 98/170 (57%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD TVRN V QL+QL YGEDGL    VE Q + T+  S + FE
Sbjct: 772 GYIQRRLIKAMESVMVKYDGTVRNQVEQLVQLGYGEDGLDACHVEFQSLPTLKPSTRAFE 831

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            ++RFDP++ER ++R   EDV++ L G   +I ELE E                      
Sbjct: 832 RQFRFDPTDERMMKRCLKEDVIKGLRGEHRLIEELESE---------------------- 869

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        W +L  DR++ R++FS+G++ +VLPCNL  +I+  Q+
Sbjct: 870 -------------WLQLISDRDSARQVFSTGDARIVLPCNLQRMIWNAQK 906



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 105/188 (55%), Gaps = 21/188 (11%)

Query: 667  IFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISE 720
            IFN+D     VLR  +M S D   + E+E+VD        R    ++L ++   G  I  
Sbjct: 1160 IFNDDNAEKLVLRIRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQG--IEA 1217

Query: 721  LEKEWEKL--CEDREALREIFSSGESNVVLP-------CNLMEVIF--ILQRWKLWGNEN 769
            + K +  L   +D++ +  I   GE   V          +LM+V+    +   + + N+ 
Sbjct: 1218 IAKVYMHLPTTDDKKRI-HITEEGEFKAVAEWILETDGSSLMKVLSERDVDPVRTYTNDI 1276

Query: 770  LRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +      + + +VRK++E+EM  V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1277 VEVFA-TLGIEAVRKAIEREMVHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 1335

Query: 830  QDTGALMR 837
            Q+TGAL R
Sbjct: 1336 QETGALAR 1343



 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/53 (79%), Positives = 47/53 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 568
            ++E+EM  V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+TGAL R
Sbjct: 1291 AIEREMVHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQETGALAR 1343



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EES++LGMDP+FARPDWM++TV PVPPL VRPAVVM GSARNQ+ + + L
Sbjct: 145 EESLMLGMDPRFARPDWMILTVFPVPPLPVRPAVVMFGSARNQDDLTHKL 194



 Score = 70.5 bits (171), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 45/69 (65%), Gaps = 6/69 (8%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPD----- 1543
            + N+   PR IITPQ NRPVMGIVQDTLTAVRKMTKRDVFL +      + + P      
Sbjct: 429  IMNLCAVPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLTRAQMMHLLMFLPTWDGRM 488

Query: 1544 PQNTVI-PE 1551
            PQ  +I PE
Sbjct: 489  PQPAIIKPE 497


>gi|297271809|ref|XP_001118060.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Macaca
           mulatta]
          Length = 1097

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N  RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE K+RFD +NER   R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932

Query: 494 NV 495
            +
Sbjct: 933 TL 934



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 85/102 (83%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAM
Sbjct: 782  SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM 841

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 842  GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883



 Score =  150 bits (380), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+  S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NER LRR   ED++++++ +  + +EL                         
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNEL------------------------- 952

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     E+E+E++ EDRE LR IF +G+S VVLPCNL+ +I+  Q+
Sbjct: 953 ----------EREFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 55/75 (73%), Gaps = 4/75 (5%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
            V G+D LS+QA ENATLLF   +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA   
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIFG 1082

Query: 1011 VIACVG--QQNVEGK 1023
               C+G  QQN  G+
Sbjct: 1083 FGVCIGVLQQNPWGR 1097



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557


>gi|47214041|emb|CAG00699.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1745

 Score =  607 bits (1565), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 303/457 (66%), Positives = 350/457 (76%), Gaps = 62/457 (13%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++MN+LMFL  WDGKMPQP ILKP+ LWTGKQ+FSLIIPG++N+ RTHSTHPDDEDSGPY
Sbjct: 427 EVMNLLMFLSTWDGKMPQPAILKPRALWTGKQIFSLIIPGHINVIRTHSTHPDDEDSGPY 486

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           + ISPGDTKV+VE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++   FY NIQTVVNN
Sbjct: 487 KHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNN 546

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL+EG                                              HSIGIGD+
Sbjct: 547 WLLIEG----------------------------------------------HSIGIGDS 560

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +TYL+IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 561 IADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 620

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL+EYNN K+MVVAGSKGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 621 GSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 680

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETG------YIQRRLIK 427
           DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETG      YIQRRLIK
Sbjct: 681 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGKFVCRRYIQRRLIK 740

Query: 428 AMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSN 487
           +MESVMV YD TVRNS+ Q++QLRYGEDGL GE VE Q + T+  SH+ FE K++FD +N
Sbjct: 741 SMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVEFQNLATLKPSHRAFEKKFKFDCTN 800

Query: 488 ERPTLRNVSSLRRVVNS---KPLLIGCWKLTSVEKEM 521
           ER       +LRR +     K ++      +S+E+E 
Sbjct: 801 ER-------ALRRTLQEDVVKDVMTNAHVQSSLEREF 830



 Score =  523 bits (1348), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 286/538 (53%), Positives = 349/538 (64%), Gaps = 101/538 (18%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS+QA +NATLLF   +RSTLC+K + E +RLS+EAF+WL+GEIE +F Q+   
Sbjct: 932  VNGDDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH 991

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 992  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKRPK----- 1044

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L+  A + AE    ++       L +VTANTAIYYDP
Sbjct: 1045 --------TPSLTVF--------LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1088

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +PQNTV+ EDQE+VNVYYEMPDFD TRISPWLLRIELDRK MTD +              
Sbjct: 1089 NPQNTVVEEDQEWVNVYYEMPDFDVTRISPWLLRIELDRKHMTDSQ-------------- 1134

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
                     D  A+    + RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1135 --------TDHGADCREDQCRIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQ 1186

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1187 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1246

Query: 1285 NDICEIF--------------------------QVLGIEAVRKSVEKEMNTVLQFYGLYV 1318
            NDI EIF                          QVLGIEAVRK++E+E+  V+ F G YV
Sbjct: 1247 NDIVEIFTVIQSLSCLIGLRELFDGDRVPSSGFQVLGIEAVRKALERELYHVISFDGSYV 1306

Query: 1319 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1378
            NYRHLALLCD MT +GHLMAITRHGINRQDTG LM+CSFEETVDVLM+A++H E DPM+G
Sbjct: 1307 NYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASSHGECDPMKG 1366

Query: 1379 VSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGPAGMFFGSAATPSS 1434
            VSENI++GQL   GTGCFDLLLDAEKCK G+EIP  +    + G  GMFFGSA +P S
Sbjct: 1367 VSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGSTGMFFGSAPSPMS 1424



 Score =  225 bits (573), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/164 (65%), Positives = 131/164 (79%), Gaps = 4/164 (2%)

Query: 775  KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
            +++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHGINRQDTG 
Sbjct: 1280 QVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGP 1339

Query: 835  LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI 894
            LM+CSFEETVDVLM+A++H E DPM+GVSENI++GQL   GTGCFDLLLDAEKCK G+EI
Sbjct: 1340 LMKCSFEETVDVLMEASSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEI 1399

Query: 895  P--LATGMMGGPAGMFFGSAATP-SSMSPQMTPW-AQSTPAYNA 934
            P  +    + G  GMFFGSA +P S MSP MTPW   +TPAY A
Sbjct: 1400 PTNIPGISVAGSTGMFFGSAPSPMSGMSPAMTPWNTGATPAYGA 1443



 Score =  156 bits (394), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/87 (82%), Positives = 78/87 (89%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 639  VAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAG 698

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAET 1084
            LTP+EFFFHAMGGREGLIDTAVKTAET
Sbjct: 699  LTPTEFFFHAMGGREGLIDTAVKTAET 725



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/171 (47%), Positives = 104/171 (60%), Gaps = 35/171 (20%)

Query: 591 RGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKF 650
           R YIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE VE Q + T+  SH+ F
Sbjct: 731 RRYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVEFQNLATLKPSHRAF 790

Query: 651 EDKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRE 710
           E K++FD +NER LRR   EDV++++M +  V S L                        
Sbjct: 791 EKKFKFDCTNERALRRTLQEDVVKDVMTNAHVQSSL------------------------ 826

Query: 711 LMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      E+E+EK+ EDRE LR IF +G+S VVLPCNL  +I+  Q+
Sbjct: 827 -----------EREFEKMKEDREILRAIFPTGDSKVVLPCNLARMIWNAQK 866



 Score =  135 bits (339), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/152 (48%), Positives = 86/152 (56%), Gaps = 50/152 (32%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQNTV+ EDQE+VNVYYEMPDFD TRISPWLLRIELDRK MTD +
Sbjct: 1075 LRKVTANTAIYYDPNPQNTVVEEDQEWVNVYYEMPDFDVTRISPWLLRIELDRKHMTDSQ 1134

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
                                                               D  A+    
Sbjct: 1135 --------------------------------------------------TDHGADCRED 1144

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            + RIMNSD+ K Q++E+ VDKM+DD+FLRCIE
Sbjct: 1145 QCRIMNSDEYKFQEDEEVVDKMDDDVFLRCIE 1176



 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 67/77 (87%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHGINRQDTG LM+CSFEETV
Sbjct: 1290 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETV 1349

Query: 576  DVLMDAAAHAEADPMRG 592
            DVLM+A++H E DPM+G
Sbjct: 1350 DVLMEASSHGECDPMKG 1366



 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 45/50 (90%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE +ILGMDPKFARP+WM+VTVLPVPPL+VRPAVVM GSARNQ+ + + L
Sbjct: 52  EEDMILGMDPKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKL 101



 Score = 71.2 bits (173), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFLD+
Sbjct: 383  IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLDR 425


>gi|6624241|dbj|BAA88485.1| RNA polymerase II largest subunit [Lethenteron reissneri]
          Length = 595

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 291/423 (68%), Positives = 332/423 (78%), Gaps = 46/423 (10%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++ ++M +LM+L  W+GKMPQP +LKP+PLWTGKQVFSL+IPG +N  RTHSTHPD+ED+
Sbjct: 55  DRAEVMTLLMYLSTWNGKMPQPAVLKPQPLWTGKQVFSLVIPGQINCVRTHSTHPDNEDT 114

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+ ISPGDTKV+VE+G L+MGILCK+SLGTS+GSL+HI FLE+GH+    FY NIQTV
Sbjct: 115 GPYRHISPGDTKVIVENGELIMGILCKRSLGTSAGSLVHIVFLEMGHDTTRLFYSNIQTV 174

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNNWLL+EG                                              HSIGI
Sbjct: 175 VNNWLLIEG----------------------------------------------HSIGI 188

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GD+IAD +TY +IQ  IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 189 GDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDAR 248

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTG SA+KSL+EYNN K+MVVAGSKGS INISQVIA VGQQNVEGKRIPFGF+ RTLPH
Sbjct: 249 DKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 308

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+ME
Sbjct: 309 FIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSME 368

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMV YD TVRN + Q+IQLRYGEDGL  E VE Q + T+  S K FE KY+FD +NER 
Sbjct: 369 SVMVKYDGTVRNGINQVIQLRYGEDGLAAEHVEFQNLSTLKPSDKAFEKKYKFDFANERA 428

Query: 491 TLR 493
             R
Sbjct: 429 MRR 431



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 88/113 (77%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 270  VAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAG 329

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            LTP+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N +
Sbjct: 330  LTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNGI 382



 Score =  142 bits (357), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 101/170 (59%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+MESVMV YD TVRN + Q+IQLRYGEDGL  E VE Q + T+  S K FE
Sbjct: 357 GYIQRRLIKSMESVMVKYDGTVRNGINQVIQLRYGEDGLAAEHVEFQNLSTLKPSDKAFE 416

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KY+FD +NER +RR   E+V+ ++M +  + +EL                         
Sbjct: 417 KKYKFDFANERAMRRCLQEEVVNDIMSNAHIQNEL------------------------- 451

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     +KE++++  DR+ LR +F +G+S VVLPCNLM +I+  Q+
Sbjct: 452 ----------DKEFDRVRSDRDTLRSVFPTGDSKVVLPCNLMRMIWNAQK 491



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 44/59 (74%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V GED LS+QA ENATLL  C VRSTLC + V E +RLS +AFEWL+GEIE RF  A V
Sbjct: 522  VKGEDPLSRQAQENATLLLNCHVRSTLCARRVTEEFRLSLQAFEWLLGEIEARFNYAIV 580



 Score = 74.7 bits (182), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 41/52 (78%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYY 1540
            ++ + + PR IITPQ+NRPVMGIVQDTLTAVRK TKRDVFLD+    T + Y
Sbjct: 14   IQELAMVPRMIITPQSNRPVMGIVQDTLTAVRKFTKRDVFLDRAEVMTLLMY 65


>gi|520509|gb|AAA50225.1| RNA polymerase II, largest subunit, partial [Crassostrea gigas]
          Length = 1340

 Score =  604 bits (1558), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 293/416 (70%), Positives = 325/416 (78%), Gaps = 46/416 (11%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           Q+MN+LMFLP WDG +PQP ILKPKPLWTGKQ+FSL+IPG  N  RTHSTHPD+ED GPY
Sbjct: 470 QVMNLLMFLPRWDGHVPQPAILKPKPLWTGKQLFSLVIPGRTNCIRTHSTHPDEEDKGPY 529

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           +WISPGDTKV++E G L+ GILCKK+LGTSSGSL H+ F+E G  + G  YG+IQT+VNN
Sbjct: 530 KWISPGDTKVLIEDGMLISGILCKKTLGTSSGSLAHVVFMEYGWVIAGEMYGHIQTLVNN 589

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLLLEG                                              HSIGIGDT
Sbjct: 590 WLLLEG----------------------------------------------HSIGIGDT 603

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IADPQTY++IQ  IKKAK DVIEVI+KAHN DLEPTPGNTLRQTFEN VNRILNDARDKT
Sbjct: 604 IADPQTYIDIQDTIKKAKHDVIEVIEKAHNDDLEPTPGNTLRQTFENMVNRILNDARDKT 663

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G  A+KSL++YNN KAMVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHFIK
Sbjct: 664 GSKAQKSLSDYNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIK 723

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM
Sbjct: 724 DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 783

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           V YD TVRN V QL+QLRYGEDGL    VE Q + T+  S++ FE +++FD +NER
Sbjct: 784 VKYDGTVRNQVEQLVQLRYGEDGLDATHVEFQTMPTLKPSNRAFERQFKFDATNER 839



 Score =  538 bits (1386), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 278/424 (65%), Positives = 317/424 (74%), Gaps = 39/424 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            VAG D+LS QAN NATLLF+CL+RSTLC K V E +RLSSEAFEWL+GE+E+RFQQAQ  
Sbjct: 934  VAGGDRLSIQANANATLLFKCLIRSTLCAKRVTEEFRLSSEAFEWLIGEVESRFQQAQAH 993

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 994  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINISKKPKTPSLT 1051

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
               YL G         A    E   D   +   T      L +VTANTAIYYDPDPQNTV
Sbjct: 1052 --VYLIG--------QAARDAEKAKDVLCRLEHTT-----LRKVTANTAIYYDPDPQNTV 1096

Query: 1111 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNC 1170
            I EDQE+VNVYYEMPDFD ++IS WLLRIELDRKRMTDKKLTME ISEKI AGFGDDLNC
Sbjct: 1097 ISEDQEWVNVYYEMPDFDVSKISAWLLRIELDRKRMTDKKLTMEQISEKITAGFGDDLNC 1156

Query: 1171 IFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIG 1230
            IFNDDNAEKLVLRIRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQGIEAI 
Sbjct: 1157 IFNDDNAEKLVLRIRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIA 1216

Query: 1231 KVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEI 1290
            KVYMHLP T+ KKRI ITE GEFKA+A+W+LETDGT+LMKVLS+RDVDP+RT +NDI E+
Sbjct: 1217 KVYMHLPNTEDKKRISITEEGEFKAVAEWILETDGTALMKVLSQRDVDPIRTTTNDIVEV 1276

Query: 1291 FQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTG 1350
            F +LGIEAVRKS+EKEMN V+ F G YVNYRHL+LLCD MTAKGHLMAITRHGINRQ+TG
Sbjct: 1277 FSILGIEAVRKSIEKEMNHVISFDGSYVNYRHLSLLCDSMTAKGHLMAITRHGINRQETG 1336

Query: 1351 ALMR 1354
            AL R
Sbjct: 1337 ALAR 1340



 Score =  217 bits (552), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 110/152 (72%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQE+VNVYYEMPDFD ++IS WLLRIELDRKRMTDKK
Sbjct: 1077 LRKVTANTAIYYDPDPQNTVISEDQEWVNVYYEMPDFDVSKISAWLLRIELDRKRMTDKK 1136

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME ISEKI AGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1137 LTMEQISEKITAGFG----------------------------DDLNCIFNDDNAEKLVL 1168

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIE
Sbjct: 1169 RIRIMNSDESKMQNEEEIVDKMEDDVFLRCIE 1200



 Score =  170 bits (430), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 86/162 (53%), Positives = 107/162 (66%), Gaps = 4/162 (2%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 682  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAG 741

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEF 1117
            LTPSEF+FHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N V    ++ 
Sbjct: 742  LTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQV----EQL 797

Query: 1118 VNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEK 1159
            V + Y     D T +    +       R  +++   +A +E+
Sbjct: 798  VQLRYGEDGLDATHVEFQTMPTLKPSNRAFERQFKFDATNER 839



 Score =  142 bits (358), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 122/222 (54%), Gaps = 49/222 (22%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD TVRN V QL+QLRYGEDGL    VE Q + T+  S++ FE
Sbjct: 769 GYIQRRLIKAMESVMVKYDGTVRNQVEQLVQLRYGEDGLDATHVEFQTMPTLKPSNRAFE 828

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++FD +NER +++  +E+V+++LMG    +S+L++E      W+QLR           
Sbjct: 829 RQFKFDATNERNMKKCLSEEVIKDLMGDALAVSQLDRE------WEQLR----------- 871

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR---------- 761
                             EDR+ LR IF +G+S VVLPCNL  +I+  Q+          
Sbjct: 872 ------------------EDRDILRSIFPTGDSKVVLPCNLQRMIWNAQKIFRIDTHKPT 913

Query: 762 --WKLWGNENLRFLCKIIFVLSV--RKSVEKEMNTVLQFYGL 799
               +   E +  LCK + V++   R S++   N  L F  L
Sbjct: 914 DLHPIKVVEGVEDLCKRLIVVAGGDRLSIQANANATLLFKCL 955



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 54/62 (87%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            I+ + +VRKS+EKEMN V+ F G YVNYRHL+LLCD MTAKGHLMAITRHGINRQ+TGAL
Sbjct: 1279 ILGIEAVRKSIEKEMNHVISFDGSYVNYRHLSLLCDSMTAKGHLMAITRHGINRQETGAL 1338

Query: 836  MR 837
             R
Sbjct: 1339 AR 1340



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/53 (81%), Positives = 47/53 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 568
            S+EKEMN V+ F G YVNYRHL+LLCD MTAKGHLMAITRHGINRQ+TGAL R
Sbjct: 1288 SIEKEMNHVISFDGSYVNYRHLSLLCDSMTAKGHLMAITRHGINRQETGALAR 1340



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           +E  +LGMD +++RPDWM+VTV+PVPPL+VRPAVVM GSARNQ+ + + L
Sbjct: 142 DECQVLGMDHRYSRPDWMIVTVMPVPPLAVRPAVVMFGSARNQDDLTHKL 191



 Score = 74.7 bits (182), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 38/43 (88%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            + N+ + PR IITPQ NRPVMGIVQDTLTAVRKMTKRDVFLD+
Sbjct: 426  ISNLALVPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLDR 468


>gi|321447689|gb|EFX61131.1| hypothetical protein DAPPUDRAFT_70163 [Daphnia pulex]
          Length = 860

 Score =  599 bits (1545), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 305/459 (66%), Positives = 344/459 (74%), Gaps = 53/459 (11%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFLPIWDGKM 89
           EE  ILGMDPK+ARPDWM+VT LPVPP +VRPA         +EQMMN+LMFLP WDGKM
Sbjct: 212 EECAILGMDPKYARPDWMIVTCLPVPPAAVRPA---RDVFLEKEQMMNLLMFLPTWDGKM 268

Query: 90  PQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGS 149
           P+P ILKP+PLWT   V S+IIPGNVNM RTHSTHPDDED GPY+WISPGDTKVV+E+G 
Sbjct: 269 PKPAILKPRPLWTAA-VHSIIIPGNVNMMRTHSTHPDDEDEGPYKWISPGDTKVVIENGE 327

Query: 150 LLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIA 209
           L+MGILCKK+LG S+ SLLHI F+ELGHEVCGRFYGNIQTV+NNWL  EG          
Sbjct: 328 LVMGILCKKTLGASAASLLHIIFMELGHEVCGRFYGNIQTVINNWLFYEG---------- 377

Query: 210 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKK 269
                                               HSIGIGD +AD QTY++IQ  I+K
Sbjct: 378 ------------------------------------HSIGIGDMLADRQTYMDIQATIEK 401

Query: 270 AKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKA 329
           AKEDVIE+IQK+HN +LEPTPGNTLRQTFENQVNRILN+A+ +    AK SLTEYNNLKA
Sbjct: 402 AKEDVIEIIQKSHNDELEPTPGNTLRQTFENQVNRILNNAQQQASALAKNSLTEYNNLKA 461

Query: 330 MVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 389
           M VAGS GS+I  SQ IACVGQQNVEG+RIPFGFRKRTLPHFIKDD GPESRGFVENSYL
Sbjct: 462 MAVAGSSGSSITTSQAIACVGQQNVEGQRIPFGFRKRTLPHFIKDDNGPESRGFVENSYL 521

Query: 390 AGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQ 449
            GLTPSEF+FHAM GRE LI  A    ET  I R+L+K MESVMVHYD TVRNS G+L+Q
Sbjct: 522 TGLTPSEFYFHAMAGRELLIYEA--RTETDII-RQLVKGMESVMVHYDGTVRNSAGRLLQ 578

Query: 450 LRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
             YGEDGL  E+VE Q++ TV LS+  FE K++FDPSNE
Sbjct: 579 FCYGEDGLAAESVELQKMPTVNLSNTVFEKKFKFDPSNE 617



 Score =  149 bits (375), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 104/168 (61%), Gaps = 35/168 (20%)

Query: 594 IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDK 653
           I R+L+K MESVMVHYD TVRNS G+L+Q  YGEDGL  E+VE Q++ TV LS+  FE K
Sbjct: 550 IIRQLVKGMESVMVHYDGTVRNSAGRLLQFCYGEDGLAAESVELQKMPTVNLSNTVFEKK 609

Query: 654 YRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMG 713
           ++FDPSNE  L  +FNE++ REL  S +VI+E+E E                        
Sbjct: 610 FKFDPSNEHNLGSMFNEEITRELTSSAEVITEIEHE------------------------ 645

Query: 714 SGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      WE+L +DREALR+IF +GE+ VVLPCNL  +I+ +Q+
Sbjct: 646 -----------WEQLYKDREALRQIFPTGENKVVLPCNLQRMIWDVQK 682



 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 75/101 (74%), Gaps = 3/101 (2%)

Query: 1010 QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 1069
            Q IACVGQQNVEG+RIPFGFRKRTLPHFIKDD GPESRGFVENSYL GLTPSEF+FHAM 
Sbjct: 476  QAIACVGQQNVEGQRIPFGFRKRTLPHFIKDDNGPESRGFVENSYLTGLTPSEFYFHAMA 535

Query: 1070 GREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GRE LI  A    + +  LV   +   +  ++YD   +N+ 
Sbjct: 536  GRELLIYEARTETDIIRQLV---KGMESVMVHYDGTVRNSA 573



 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 53/59 (89%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V GED+LS QAN+NATLLFQCLVRSTLC+K +AE YRLSSEAFEWL+G+IE RFQQAQ 
Sbjct: 713  VVGEDKLSIQANQNATLLFQCLVRSTLCSKRLAEEYRLSSEAFEWLIGKIETRFQQAQA 771


>gi|31127042|gb|AAF26663.2|AF139013_1 RNA polymerase II largest subunit [Tanystylum orbiculare]
          Length = 624

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 303/452 (67%), Positives = 338/452 (74%), Gaps = 56/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMM +LMFLP WDG+M QP ILKPKPLWTGKQ+FSLIIPG VN  RTHSTHPDDED G
Sbjct: 196 RDQMMTLLMFLPTWDGRMMQPAILKPKPLWTGKQLFSLIIPGTVNCIRTHSTHPDDEDDG 255

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++EHG LL GI+CK+++G S GSL+HI  LELGHEV G FYG+IQTVV
Sbjct: 256 PYKWISPGDTKVLIEHGHLLSGIICKRTVGPSGGSLMHIVMLELGHEVAGLFYGHIQTVV 315

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 316 NNWLLLEG----------------------------------------------HSIGIG 329

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD QTY +I+  I+KAK DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARD
Sbjct: 330 DTIADHQTYQDIRNTIRKAKNDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARD 389

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+E+NN KAMVV+GSKGS INISQVIACVGQQNVEGKRIPF FRKRTLPHF
Sbjct: 390 KTGSSAQKSLSEFNNFKAMVVSGSKGSKINISQVIACVGQQNVEGKRIPFVFRKRTLPHF 449

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IK    P SRGFVENSYL+GLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 450 IKXXXXPXSRGFVENSYLSGLTPAEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 509

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV YD T+RNSV QLIQLRYGEDGL G  VE Q + T+  S + F+  ++FDPS+ER  
Sbjct: 510 VMVTYDGTIRNSVQQLIQLRYGEDGLDGTMVESQMLPTIKPSDQAFQRMFKFDPSSER-- 567

Query: 492 LRNVSSLRRVVNS---KPLLIGCWKLTSVEKE 520
                 LRRV      K L+     L  +EKE
Sbjct: 568 -----YLRRVFTEDVVKELISSGVALGELEKE 594



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/138 (56%), Positives = 94/138 (68%), Gaps = 4/138 (2%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIACVGQQNVEGKRIPF FRKRTLPHFIK    P SRGFVENSYL+GLT
Sbjct: 412  GSKGSKINISQVIACVGQQNVEGKRIPFVFRKRTLPHFIKXXXXPXSRGFVENSYLSGLT 471

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
            P+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N+V    Q+ + 
Sbjct: 472  PAEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTIRNSV----QQLIQ 527

Query: 1120 VYYEMPDFDPTRISPWLL 1137
            + Y     D T +   +L
Sbjct: 528  LRYGEDGLDGTMVESQML 545



 Score =  150 bits (380), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 100/161 (62%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD T+RNSV QLIQLRYGEDGL G  VE Q + T+  S + F+
Sbjct: 497 GYIQRRLIKAMESVMVTYDGTIRNSVQQLIQLRYGEDGLDGTMVESQMLPTIKPSDQAFQ 556

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             ++FDPS+ER LRR+F EDV++EL+ SG  + ELEK                       
Sbjct: 557 RMFKFDPSSERYLRRVFTEDVVKELISSGVALGELEK----------------------- 593

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                       E+E+L +DRE LR +F +G++ VVLPCNL
Sbjct: 594 ------------EYERLKKDREVLRSVFPTGDNKVVLPCNL 622



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 41/54 (75%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            +E + + PR IITPQ N+PVMGIVQDTL AVRKMTKRDVFL++    T + + P
Sbjct: 154  IEKLAMVPRNIITPQANKPVMGIVQDTLMAVRKMTKRDVFLERDQMMTLLMFLP 207


>gi|31127044|gb|AAF26666.2|AF139016_1 RNA polymerase II largest subunit [Milnesium tardigradum]
          Length = 445

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 288/418 (68%), Positives = 330/418 (78%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++++M +LM+LPIWDG++PQ  ILKPK LWTGKQ+FSLIIPGN+N+ RTHSTHPD+ED G
Sbjct: 17  KDEVMQLLMWLPIWDGRLPQAAILKPKALWTGKQIFSLIIPGNINLIRTHSTHPDEEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY++ISPGDTKV++EH  LL GI+CKKSLGTSSGSL+HI FLELGHEV G+FY +IQTVV
Sbjct: 77  PYKYISPGDTKVIIEHSQLLSGIICKKSLGTSSGSLVHIVFLELGHEVAGKFYSHIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL+EG                                              HSIGIG
Sbjct: 137 NNWLLIEG----------------------------------------------HSIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIADPQTY EIQ  I+KAK DV+EVI+KAHN +LEPTPGN+LRQTFEN VNRILNDARD
Sbjct: 151 DTIADPQTYKEIQHTIRKAKLDVVEVIEKAHNDELEPTPGNSLRQTFENSVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSA+KSL+++NN KAMVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHF
Sbjct: 211 KTGGSAQKSLSDFNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           I DDYGPESRGFVENSYLAGLTPSEFFFH+MGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 271 ITDDYGPESRGFVENSYLAGLTPSEFFFHSMGGREGLIDTAVKTAETGYIQRRLIKAMES 330

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
            MV YD TVRN+   L+QLRYGEDGL   AVE Q + T+  ++  FE ++R   +N++
Sbjct: 331 TMVQYDGTVRNAHQSLVQLRYGEDGLDACAVEFQTLPTMKPNNASFEKRFRMHLNNDK 388



 Score =  166 bits (419), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 82/125 (65%), Positives = 92/125 (73%), Gaps = 4/125 (3%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFI DDYGPESRGFVENSYLAG
Sbjct: 231  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFITDDYGPESRGFVENSYLAG 290

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEF 1117
            LTPSEFFFH+MGGREGLIDTAVKTAET  +   L +   +T + YD     TV    Q  
Sbjct: 291  LTPSEFFFHSMGGREGLIDTAVKTAETGYIQRRLIKAMESTMVQYD----GTVRNAHQSL 346

Query: 1118 VNVYY 1122
            V + Y
Sbjct: 347  VQLRY 351



 Score =  114 bits (285), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 94/161 (58%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMES MV YD TVRN+   L+QLRYGEDGL   AVE Q + T+  ++  FE
Sbjct: 318 GYIQRRLIKAMESTMVQYDGTVRNAHQSLVQLRYGEDGLDACAVEFQTLPTMKPNNASFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            ++R   +N++ LR+++  +++++L+ + +V   L++E      + QLR+          
Sbjct: 378 KRFRMHLNNDKLLRKLYEPEIVQDLVSNPEVAXILDQE------FSQLRK---------- 421

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                              DREA+R +F +G+S VVLPCNL
Sbjct: 422 -------------------DREAVRSVFPTGDSRVVLPCNL 443


>gi|195996443|ref|XP_002108090.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
 gi|190588866|gb|EDV28888.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
          Length = 1784

 Score =  598 bits (1541), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 290/418 (69%), Positives = 331/418 (79%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +E +MN+LM+LP W+GKMPQP IL+PK LWTGKQ+FSLIIPGNVN+ RTHSTHPDDED G
Sbjct: 545 KEVVMNLLMWLPNWNGKMPQPAILRPKELWTGKQIFSLIIPGNVNLIRTHSTHPDDEDKG 604

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY++ISPGDTKV++EHG ++ GILCK++LGTSSGSL+H+ F ELGHEV  +FYGNIQTVV
Sbjct: 605 PYKFISPGDTKVLIEHGEVISGILCKRTLGTSSGSLVHVIFNELGHEVARQFYGNIQTVV 664

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL+EG                                              HSIGIG
Sbjct: 665 NNWLLIEG----------------------------------------------HSIGIG 678

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           D+IAD  TY +IQ  I KAK+DV+EVI+KAHN +LEPTPGNTLR+TFENQVNRILNDARD
Sbjct: 679 DSIADEATYQDIQSTILKAKQDVVEVIEKAHNDELEPTPGNTLRKTFENQVNRILNDARD 738

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+ +NN KAMVVAGSKGS INISQVIA VGQQNVEGKRIPFGFR RTLPHF
Sbjct: 739 KTGSSAQKSLSNFNNFKAMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFRHRTLPHF 798

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           I+DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 
Sbjct: 799 IQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMEG 858

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMVHYD TVRN+  QLIQL YGEDGL G A+E Q + ++ LSH  F+ ++RFD  NE+
Sbjct: 859 VMVHYDGTVRNANMQLIQLCYGEDGLDGSAIEFQDMPSLKLSHTGFQRRFRFDIQNEK 916



 Score =  583 bits (1503), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 301/499 (60%), Positives = 362/499 (72%), Gaps = 42/499 (8%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V GED++SKQA ENATLLF  L+RS L +K V E Y L+SEAF+WL+GE+    Q  +++
Sbjct: 1011 VHGEDRISKQAQENATLLFNILLRSVLSSKRVTEEYHLTSEAFDWLIGEV----QPGEMV 1066

Query: 1013 ACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 1055
              +  Q+                 V  K +  G  +  L   I     P++        L
Sbjct: 1067 GPLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINVSKKPKTPSLT--VIL 1122

Query: 1056 AGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQ 1115
             G         A    E   D   +   T      L +VTANTAIYYDP+P+NTVI EDQ
Sbjct: 1123 TG--------PAARDAEKAKDVLCRLEHTT-----LRKVTANTAIYYDPNPKNTVISEDQ 1169

Query: 1116 EFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDD 1175
            EFVN YYEMPDF+P+++SPWLLRIELDRKRMTDKKLTME I+EKINAGFG+DLNCIFNDD
Sbjct: 1170 EFVNAYYEMPDFEPSQLSPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGEDLNCIFNDD 1229

Query: 1176 NAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMH 1235
            NAEKL+LRIRI+N+D+ +  D ++  D+M+DD+FLRCIE+NMLSDMTLQGIE I KVYMH
Sbjct: 1230 NAEKLILRIRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGIEQISKVYMH 1289

Query: 1236 LPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1295
            LP  DSKKR+II E GE+KAI +W+LETDG +L KVLS +DVD V++ SNDI EIF VLG
Sbjct: 1290 LPLQDSKKRMIINEEGEYKAIQEWILETDGVNLQKVLSVKDVDAVKSTSNDIVEIFSVLG 1349

Query: 1296 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1355
            IEAVRK+VEKEMN V+ F G YVNYRHLALLCDVMT +GHLMAITRHGINRQ+ GALMRC
Sbjct: 1350 IEAVRKAVEKEMNHVISFDGSYVNYRHLALLCDVMTCRGHLMAITRHGINRQEVGALMRC 1409

Query: 1356 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL-- 1413
            SFEETVD+LMDAA H+E D +RGVSENI++GQL ++GTGCFDLLLD EKCKDG+EIP   
Sbjct: 1410 SFEETVDILMDAAFHSETDYLRGVSENIMLGQLSKIGTGCFDLLLDPEKCKDGMEIPANV 1469

Query: 1414 -ATGMMGG-PAGMFFGSAA 1430
               GM+ G  AG+F+G  A
Sbjct: 1470 PVAGMINGVGAGVFYGDGA 1488



 Score =  232 bits (592), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 148/317 (46%), Positives = 192/317 (60%), Gaps = 28/317 (8%)

Query: 667  IFNEDVLRELMGSGDVISELEKEMVDH-FSWKQLR-----RIFNEDVLRELMGSGDVISE 720
            IFN+D   +L+    +++   KE VD    W ++      R    ++L ++   G  I +
Sbjct: 1225 IFNDDNAEKLILRIRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQG--IEQ 1282

Query: 721  LEKEWEKL-CEDREALREIFSSGESNVVLP-------CNLMEVIFILQRWKLWGNEN-LR 771
            + K +  L  +D +    I   GE   +          NL +V+ +     +    N + 
Sbjct: 1283 ISKVYMHLPLQDSKKRMIINEEGEYKAIQEWILETDGVNLQKVLSVKDVDAVKSTSNDIV 1342

Query: 772  FLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQD 831
             +  ++ + +VRK+VEKEMN V+ F G YVNYRHLALLCDVMT +GHLMAITRHGINRQ+
Sbjct: 1343 EIFSVLGIEAVRKAVEKEMNHVISFDGSYVNYRHLALLCDVMTCRGHLMAITRHGINRQE 1402

Query: 832  TGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDG 891
             GALMRCSFEETVD+LMDAA H+E D +RGVSENI++GQL ++GTGCFDLLLD EKCKDG
Sbjct: 1403 VGALMRCSFEETVDILMDAAFHSETDYLRGVSENIMLGQLSKIGTGCFDLLLDPEKCKDG 1462

Query: 892  IEIPL---ATGMMGG-PAGMFFGSAATPSSMSPQMTPWAQS--TPAYNA--LMSPGAAMT 943
            +EIP      GM+ G  AG+F+G  A    MSPQMTPW  S  TP+Y        G  MT
Sbjct: 1463 MEIPANVPVAGMINGVGAGVFYGDGA---GMSPQMTPWDSSLTTPSYEGPYTPGMGGGMT 1519

Query: 944  PGGPGFSPSVAGEDQLS 960
            PG  GFSPS A E   S
Sbjct: 1520 PGAAGFSPSGASEPSFS 1536



 Score =  198 bits (503), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 96/152 (63%), Positives = 114/152 (75%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+P+NTVI EDQEFVN YYEMPDF+P+++SPWLLRIELDRKRMTDKK
Sbjct: 1145 LRKVTANTAIYYDPNPKNTVISEDQEFVNAYYEMPDFEPSQLSPWLLRIELDRKRMTDKK 1204

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGF                            G+DLNCIFNDDNAEKL+L
Sbjct: 1205 LTMEQIAEKINAGF----------------------------GEDLNCIFNDDNAEKLIL 1236

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRI+N+D+ +  D ++  D+M+DD+FLRCIE
Sbjct: 1237 RIRIVNNDNKEGVDRDEQWDRMDDDVFLRCIE 1268



 Score =  161 bits (407), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 75/106 (70%), Positives = 85/106 (80%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIA VGQQNVEGKRIPFGFR RTLPHFI+DDYGPESRGFVENSYLAG
Sbjct: 759  VAGSKGSKINISQVIAVVGQQNVEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAG 818

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
            LTP+EFFFHAMGGREGLIDTAVKTAET  +   L +      ++YD
Sbjct: 819  LTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMEGVMVHYD 864



 Score =  134 bits (338), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            +VEKEMN V+ F G YVNYRHLALLCDVMT +GHLMAITRHGINRQ+ GALMRCSFEETV
Sbjct: 1356 AVEKEMNHVISFDGSYVNYRHLALLCDVMTCRGHLMAITRHGINRQEVGALMRCSFEETV 1415

Query: 576  DVLMDAAAHAEADPMRG 592
            D+LMDAA H+E D +RG
Sbjct: 1416 DILMDAAFHSETDYLRG 1432



 Score =  124 bits (310), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 99/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAME VMVHYD TVRN+  QLIQL YGEDGL G A+E Q + ++ LSH  F+
Sbjct: 846 GYIQRRLIKAMEGVMVHYDGTVRNANMQLIQLCYGEDGLDGSAIEFQDMPSLKLSHTGFQ 905

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            ++RFD  NE++L++  + +++R ++   +V     KE                      
Sbjct: 906 RRFRFDIQNEKRLKQYLHGNIVRSIITDAEV-----KE---------------------- 938

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                   +L+ E+E+L +DR A+R I  +G+S V LP NL  +I+  Q+
Sbjct: 939 --------KLQSEFEQLSKDRNAVRSILQNGDSRVALPVNLNRLIWNAQK 980



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           E+S +LGMDP+FARPDWM++T LPVPPL VRP+VVMHGSAR+Q+ + + L
Sbjct: 219 EDSEVLGMDPRFARPDWMIITCLPVPPLHVRPSVVMHGSARSQDDLTHKL 268



 Score = 67.0 bits (162), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 41/55 (74%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPD 1543
            +  I + PRQI+TPQ+N+PVMGIVQD+LTAVRK T RDVFL+K      + + P+
Sbjct: 503  ITEICMVPRQIVTPQSNKPVMGIVQDSLTAVRKFTMRDVFLEKEVVMNLLMWLPN 557


>gi|216296571|gb|ACJ72070.1| RNA polymerase II largest subunit [Trichoplax adhaerens]
          Length = 625

 Score =  597 bits (1539), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 288/418 (68%), Positives = 330/418 (78%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +E +MN+LM+LP W+GKMPQP IL+PK LWTGKQ+FSLIIPGNVN+ RTHSTHPDDED G
Sbjct: 84  KEVVMNLLMWLPNWNGKMPQPAILRPKELWTGKQIFSLIIPGNVNLIRTHSTHPDDEDKG 143

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY++ISPGDTKV++EHG ++ GILCK++LGTSSGSL+H+ F ELGHE+  +FYGNIQTVV
Sbjct: 144 PYKFISPGDTKVLIEHGEVISGILCKRTLGTSSGSLVHVIFNELGHEIARQFYGNIQTVV 203

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL+EG                                              HSIGIG
Sbjct: 204 NNWLLIEG----------------------------------------------HSIGIG 217

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           D+IAD  TY +IQ  I KAK+DV+EVI+KAHN +LEPTPGNTLR+TFENQVNRILNDARD
Sbjct: 218 DSIADEATYQDIQSTILKAKQDVVEVIEKAHNDELEPTPGNTLRKTFENQVNRILNDARD 277

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+ +NN KAMVVAGSKGS INISQVIA VGQQNVEGKRIPFGFR RTLPHF
Sbjct: 278 KTGSSAQKSLSNFNNFKAMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFRHRTLPHF 337

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           I+DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 
Sbjct: 338 IQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMEG 397

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMVHYD TVRN+  QLIQL YGE GL G A+E Q + ++ LSH  F+ ++RFD  NE+
Sbjct: 398 VMVHYDGTVRNANMQLIQLCYGEVGLDGSAIEFQDMPSLKLSHTGFQRRFRFDIQNEK 455



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/112 (67%), Positives = 87/112 (77%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIA VGQQNVEGKRIPFGFR RTLPHFI+DDYGPESRGFVENSYLAG
Sbjct: 298  VAGSKGSKINISQVIAVVGQQNVEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAG 357

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            LTP+EFFFHAMGGREGLIDTAVKTAET  +   L +      ++YD   +N 
Sbjct: 358  LTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMEGVMVHYDGTVRNA 409



 Score =  120 bits (301), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 98/170 (57%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAME VMVHYD TVRN+  QLIQL YGE GL G A+E Q + ++ LSH  F+
Sbjct: 385 GYIQRRLIKAMEGVMVHYDGTVRNANMQLIQLCYGEVGLDGSAIEFQDMPSLKLSHTGFQ 444

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            ++RFD  NE++L++  + +++R ++   +V     KE                      
Sbjct: 445 RRFRFDIQNEKRLKQYLHGNIVRSIITDAEV-----KE---------------------- 477

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                   +L+ E+E+L +DR A+R I  +G+S V LP NL  +I+  Q+
Sbjct: 478 --------KLQSEFEQLSKDRNAVRSILQNGDSRVALPVNLNRLIWNAQK 519



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 49/59 (83%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V GED++SKQA ENATLLF  L+RS L +K V E Y L+SEAF+WL+GE+E+RFQQ+QV
Sbjct: 550  VHGEDRISKQAQENATLLFNILLRSVLSSKRVTEEYHLTSEAFDWLIGEVESRFQQSQV 608



 Score = 67.8 bits (164), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 41/55 (74%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPD 1543
            +  I + PRQI+TPQ+N+PVMGIVQD+LTAVRK T RDVFL+K      + + P+
Sbjct: 42   ITEICMVPRQIVTPQSNKPVMGIVQDSLTAVRKFTMRDVFLEKEVVMNLLMWLPN 96


>gi|31127050|gb|AAC03139.2| RNA polymerase II largest subunit [Periplaneta americana]
          Length = 468

 Score =  591 bits (1524), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 299/399 (74%), Positives = 321/399 (80%), Gaps = 56/399 (14%)

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GP++WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEVCG+FYGNIQTV
Sbjct: 1   GPFKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGQFYGNIQTV 60

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNNWLLLEG                                              HSIGI
Sbjct: 61  VNNWLLLEG----------------------------------------------HSIGI 74

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 75  GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 134

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 135 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 194

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 195 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 254

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDP+NER 
Sbjct: 255 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKFDPTNER- 313

Query: 491 TLRNVSSLRRVVNSKPL--LIGCWKLTS-VEKEMNTVLQ 526
                  LRR+ N   L  L+G   + S +EKE   +++
Sbjct: 314 ------YLRRIFNEDILKELMGSGDVISELEKEWEQLVK 346



 Score =  205 bits (522), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/170 (61%), Positives = 120/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE
Sbjct: 243 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFE 302

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER LRRIFNED+L+ELMGSGDVISELEKE                      
Sbjct: 303 KKFKFDPTNERYLRRIFNEDILKELMGSGDVISELEKE---------------------- 340

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE+L +DREALR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 341 -------------WEQLVKDREALRQIFPSGESKVVLPCNLQRMIWNVQK 377



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 167  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 226

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 227  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 268



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/59 (86%), Positives = 55/59 (93%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            VAG+D LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GEIE RFQQAQV
Sbjct: 408  VAGDDHLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQV 466


>gi|170587086|ref|XP_001898310.1| DNA-directed RNA polymerase II largest subunit [Brugia malayi]
 gi|158594705|gb|EDP33289.1| DNA-directed RNA polymerase II largest subunit, putative [Brugia
           malayi]
          Length = 1943

 Score =  590 bits (1520), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 287/422 (68%), Positives = 333/422 (78%), Gaps = 47/422 (11%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           +MM++LM +P WDGK+PQP ILKPKPLWTGKQVF+LIIPGNVN+ RTHSTHPDDED+GPY
Sbjct: 624 RMMDLLMQMPNWDGKVPQPAILKPKPLWTGKQVFTLIIPGNVNVLRTHSTHPDDEDNGPY 683

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           +WISPGDTKV++EHG LL GI+C +++G S+G+LLH+  LELG EV   FY +IQTVVN 
Sbjct: 684 KWISPGDTKVIIEHGELLSGIICSRTIGRSAGNLLHVVTLELGWEVAAHFYSHIQTVVNA 743

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL EG                                              H+IGIGDT
Sbjct: 744 WLLAEG----------------------------------------------HTIGIGDT 757

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD  TY +IQ  I+KAK DV+EVI+KAHN +LEPTPGNTLRQTFEN VNRILNDARD+T
Sbjct: 758 IADQATYRDIQETIRKAKLDVVEVIEKAHNDELEPTPGNTLRQTFENMVNRILNDARDRT 817

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           GGSA++SL+EYNN KAMVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHFIK
Sbjct: 818 GGSAQRSLSEYNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIK 877

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM
Sbjct: 878 DDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 937

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V+YD TVRNS+GQL+QLRYGEDGL G  VE+Q + ++  ++  FE +++ D S+E+ +LR
Sbjct: 938 VNYDGTVRNSLGQLVQLRYGEDGLDGMWVENQSMPSMKPTNALFEKEFKLDLSDEK-SLR 996

Query: 494 NV 495
            +
Sbjct: 997 KL 998



 Score =  584 bits (1506), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 299/487 (61%), Positives = 361/487 (74%), Gaps = 52/487 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+GED++SKQA  NATLL   L+RSTLC K +AE +RL+SE FEWL+GEIE+RF+QA   
Sbjct: 1088 VSGEDRISKQAQYNATLLMNILLRSTLCAKRMAEKHRLNSEGFEWLIGEIESRFKQAIVQ 1147

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1148 PGEMVGAIAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINVSKKPK----- 1200

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                    TPS   F        L  TA K AE   +VL       L +VTANTAIYYDP
Sbjct: 1201 --------TPSLTVF--------LQGTAAKDAEKAKDVLCKLEHTTLRKVTANTAIYYDP 1244

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DP+NT+I EDQE+VN++YEMPDFDP+R SPWLLRIELDR+RMTDKKLTMEAI++KI+ GF
Sbjct: 1245 DPKNTIIEEDQEWVNIFYEMPDFDPSRCSPWLLRIELDRRRMTDKKLTMEAIADKIHQGF 1304

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLN I+ DDNAEKLV R+RI N +  K  +E++ V++MEDD+FLRCIE NMLSD+TLQ
Sbjct: 1305 GDDLNVIYTDDNAEKLVFRLRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQ 1363

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIEAI KVYMH P TD KKR++IT  G FKAI +WLLETDGT+L KVLSE++VDP+RT S
Sbjct: 1364 GIEAITKVYMHKPTTDDKKRVVITPDGGFKAIPEWLLETDGTALAKVLSEQNVDPIRTTS 1423

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIF+VLGIEAVRK++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 1424 NDICEIFEVLGIEAVRKAIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 1483

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQ+ GALMRCSFEETVD+LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LDA+K
Sbjct: 1484 NRQEVGALMRCSFEETVDILMEAAVHAEQDPVKGVSENIMLGQLARAGTGCFDLVLDADK 1543

Query: 1405 CKDGIEI 1411
            CK  +EI
Sbjct: 1544 CKLAMEI 1550



 Score =  228 bits (580), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 149/192 (77%), Gaps = 9/192 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRK++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1426 ICEIFEVLGIEAVRKAIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 1485

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            Q+ GALMRCSFEETVD+LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LDA+KCK
Sbjct: 1486 QEVGALMRCSFEETVDILMEAAVHAEQDPVKGVSENIMLGQLARAGTGCFDLVLDADKCK 1545

Query: 890  DGIEIPLATGMMGGPAGMFFG--SAATPSSMSPQMTPW-AQSTPAYNALMSP--GAAMTP 944
              +EI    G++G   GM+FG   +   S+MSP  TPW A +TPAY A  SP  G+ MTP
Sbjct: 1546 LAMEIQTGGGLLGT-GGMYFGSSMSPASSAMSPAQTPWNAGTTPAYGAAWSPATGSGMTP 1604

Query: 945  GGPGFSPSVAGE 956
            GG GFSPS   E
Sbjct: 1605 GGAGFSPSGHSE 1616



 Score =  185 bits (469), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+NT+I EDQE+VN++YEMPDFDP+R SPWLLRIELDR+RMTDKK
Sbjct: 1231 LRKVTANTAIYYDPDPKNTIIEEDQEWVNIFYEMPDFDPSRCSPWLLRIELDRRRMTDKK 1290

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTMEAI++KI+ GFG                            DDLN I+ DDNAEKLV 
Sbjct: 1291 LTMEAIADKIHQGFG----------------------------DDLNVIYTDDNAEKLVF 1322

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N +  K  +E++ V++MEDD+FLRCIE
Sbjct: 1323 RLRITNQEGDK-GNEDEQVERMEDDVFLRCIE 1353



 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 90/113 (79%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAG
Sbjct: 836  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAG 895

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            LTPSEFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 896  LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSL 948



 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 104/170 (61%), Gaps = 35/170 (20%)

Query: 592  GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
            GYIQRRLIKAMESVMV+YD TVRNS+GQL+QLRYGEDGL G  VE+Q + ++  ++  FE
Sbjct: 923  GYIQRRLIKAMESVMVNYDGTVRNSLGQLVQLRYGEDGLDGMWVENQSMPSMKPTNALFE 982

Query: 652  DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +++ D S+E+ LR+++ E+V+REL GS + + E+E                        
Sbjct: 983  KEFKLDLSDEKSLRKLYTENVVRELQGSAEALKEVE------------------------ 1018

Query: 712  MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 1019 -----------AEWGQLEEDRRLLRKIFPKGDAKIVLPCNLQRMIWNAQK 1057



 Score =  138 bits (347), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 70/77 (90%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETV
Sbjct: 1441 AIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETV 1500

Query: 576  DVLMDAAAHAEADPMRG 592
            D+LM+AA HAE DP++G
Sbjct: 1501 DILMEAAVHAEQDPVKG 1517



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/49 (63%), Positives = 41/49 (83%)

Query: 31  ESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           + +ILGMDP++ARPDWM+  V+PVPPL+VRPAVV  GSARNQ+ + + L
Sbjct: 297 DCLILGMDPRYARPDWMIAQVIPVPPLAVRPAVVTFGSARNQDDLTHKL 345



 Score = 68.2 bits (165), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 36/42 (85%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 1530
            V  I + PRQ+ITPQ N+PVMGIVQDTLTAVR MTKRDVF++
Sbjct: 580  VSEIAMVPRQLITPQANKPVMGIVQDTLTAVRMMTKRDVFIE 621


>gi|268553547|ref|XP_002634760.1| C. briggsae CBR-RPB-1 protein [Caenorhabditis briggsae]
 gi|60393735|sp|P35074.2|RPB1_CAEBR RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
           Short=RNA polymerase II subunit B1; AltName:
           Full=DNA-directed RNA polymerase III largest subunit
          Length = 1853

 Score =  589 bits (1519), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 284/422 (67%), Positives = 331/422 (78%), Gaps = 46/422 (10%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           MM++LM+LP WDGK+PQP ILKPKPLWTGKQVFSLIIPGNVN+ RTHSTHPD EDSGPY+
Sbjct: 554 MMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYK 613

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           WISPGDTKV++EHG LL GI+C K++G S+G+LLH+  LELGHE+   FY +IQTV+N W
Sbjct: 614 WISPGDTKVLIEHGELLSGIVCSKTVGKSAGNLLHVVALELGHEIAANFYSHIQTVINAW 673

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL EG                                              H+IGIGDTI
Sbjct: 674 LLREG----------------------------------------------HTIGIGDTI 687

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD  TYL+IQ  I+KAK+DV++VI+KAHN DLEPTPGNTLRQTFEN+VN+ILNDARD+TG
Sbjct: 688 ADQSTYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTG 747

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E+NN K+MVV+GSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHFIKD
Sbjct: 748 SSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKD 807

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV
Sbjct: 808 DYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 867

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLRN 494
           +YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE  +R D ++ +   +N
Sbjct: 868 NYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKN 927

Query: 495 VS 496
            S
Sbjct: 928 YS 929



 Score =  565 bits (1455), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 294/499 (58%), Positives = 354/499 (70%), Gaps = 16/499 (3%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
            V+G D++SKQA  NATLL   L+RSTLCTK +  + +L++EAF+WL+GEIE RFQQA  Q
Sbjct: 1017 VSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQ 1076

Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL-----TPSEFFF 1065
                VG    +    P         H+        + G      +  +     TPS   F
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVF 1136

Query: 1066 ---HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
                A    E   D   K   T      L +VT NTAIYYDPDP+NTVI ED+E+V+++Y
Sbjct: 1137 LTGAAAKDPEKAKDVLCKLEHTT-----LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFY 1191

Query: 1123 EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1182
            EMPD D TR SPWLLRIELDRKRM DKKLTME I+++I+ GFG D++ I+ DDNAEKLV 
Sbjct: 1192 EMPDHDLTRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGQDVHTIYTDDNAEKLVF 1251

Query: 1183 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1242
            R+RI   +D   + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD K
Sbjct: 1252 RLRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDK 1310

Query: 1243 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1302
            KRIIIT  G FKA+ADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRKS
Sbjct: 1311 KRIIITPEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKS 1370

Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1362
            +EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD
Sbjct: 1371 IEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVD 1430

Query: 1363 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPA 1422
            +LM+A+ HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK G+EIP    M  G  
Sbjct: 1431 ILMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKHGMEIPQNVVMGAGIY 1490

Query: 1423 GMFFGSAATPSSIPGPPAW 1441
            G  F  + +    P    W
Sbjct: 1491 GGGFAGSPSREFSPAHSPW 1509



 Score =  228 bits (581), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 116/189 (61%), Positives = 139/189 (73%), Gaps = 16/189 (8%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRKS+EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1355 ICEIFEVLGIEAVRKSIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 1414

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            Q+ GALMRCSFEETVD+LM+A+ HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK
Sbjct: 1415 QEVGALMRCSFEETVDILMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCK 1474

Query: 890  DGIEIP----LATGMMGGPAGMFFGSAATPS-SMSPQMTPWAQS-TPAYNALMSPGAAMT 943
             G+EIP    +  G+ GG      G A +PS   SP  +PW    TP Y+   SP   M+
Sbjct: 1475 HGMEIPQNVVMGAGIYGG------GFAGSPSREFSPAHSPWNSGVTPNYSGPWSPTGGMS 1528

Query: 944  PGGPGFSPS 952
            P   GFSP+
Sbjct: 1529 PSA-GFSPA 1536



 Score =  167 bits (424), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/152 (55%), Positives = 104/152 (68%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D TR SPWLLRIELDRKRM DKK
Sbjct: 1160 LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLTRTSPWLLRIELDRKRMVDKK 1219

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+ GFG D++T                            I+ DDNAEKLV 
Sbjct: 1220 LTMEMIADRIHGGFGQDVHT----------------------------IYTDDNAEKLVF 1251

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   +D   + +E+ VDKMEDD+FLRCIE
Sbjct: 1252 RLRIA-GEDKGAEGQEEQVDKMEDDVFLRCIE 1282



 Score =  164 bits (416), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 78/111 (70%), Positives = 89/111 (80%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLT
Sbjct: 767  GSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLT 826

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            PSEFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 827  PSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSL 877



 Score =  138 bits (347), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 70/77 (90%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            S+EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETV
Sbjct: 1370 SIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETV 1429

Query: 576  DVLMDAAAHAEADPMRG 592
            D+LM+A+ HAE DP++G
Sbjct: 1430 DILMEASVHAEVDPVKG 1446



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/170 (42%), Positives = 100/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 852 GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 911

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++ + LR+ ++EDV+RE+  + D IS +E                        
Sbjct: 912 RDFRMDLTDNKFLRKNYSEDVVREIQEAQDGISLVE------------------------ 947

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 948 -----------SEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQK 986



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           E+ +++GMDP+FARP+WM+ TVLPVPPL+VRPAVV  GSA+NQ+ + + L
Sbjct: 225 EDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKL 274



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 36/42 (85%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 1530
            +E I + PRQ+ITPQ N+PVMGIVQDTL AVR MTKRD+F+D
Sbjct: 509  IEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDIFID 550


>gi|339252982|ref|XP_003371714.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
 gi|316967997|gb|EFV52341.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
          Length = 1816

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 286/419 (68%), Positives = 324/419 (77%), Gaps = 46/419 (10%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++  M ++LM LP W+GKMP P I+KPKPLWTGKQ+FS+IIPGNVN+ RTHSTHPDDED+
Sbjct: 538 DRATMFDLLMLLPKWNGKMPIPTIVKPKPLWTGKQLFSMIIPGNVNLIRTHSTHPDDEDN 597

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV++EHG LL GILCKK+LG S+GSL+HI  LELG  +   FY +IQ V
Sbjct: 598 GPYKWISPGDTKVLIEHGQLLSGILCKKTLGASAGSLMHIVTLELGCYIAASFYSDIQVV 657

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN WLL E                                              GHSIGI
Sbjct: 658 VNTWLLTE----------------------------------------------GHSIGI 671

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIAD  TYLEI+  I +AK+DVI+VI++AHN +LE TPGNTLR TFEN VNRILNDAR
Sbjct: 672 GDTIADQATYLEIKDTIHRAKQDVIDVIERAHNDELEATPGNTLRDTFENSVNRILNDAR 731

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTG SA++SL+E+NN KAMVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPH
Sbjct: 732 DKTGASAQRSLSEFNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPH 791

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEFFFH MGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 792 FIKDDYGPESRGFVENSYLAGLTPSEFFFHTMGGREGLIDTAVKTAETGYIQRRLIKAME 851

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           SVMV YD TVRN+ GQL+QLRYGEDGL G  VE Q + ++ LS +KF +KYRFD ++ER
Sbjct: 852 SVMVAYDGTVRNATGQLVQLRYGEDGLDGAMVEFQSLPSLKLSDEKFREKYRFDLNDER 910



 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/479 (50%), Positives = 318/479 (66%), Gaps = 49/479 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G+D +SKQA  NATLLF C++RSTL +K +AE ++L+ EAFEW++GE+E RF  AQV 
Sbjct: 1005 VKGDDPISKQAQHNATLLFNCMLRSTLSSKRLAEEFKLNHEAFEWILGEVETRFNLAQVQ 1064

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
               G+       +  G               P ++  +   + AG++           +E
Sbjct: 1065 P--GEMVGALSALSLG--------------EPATQMTLNTFHYAGVSAKNVTLGVPRLKE 1108

Query: 1073 GLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYE-MPDFDPTR 1131
             + D   +  +T      L +V  NTA+YYDPDP NTVI +DQE+V+++YE +P  D   
Sbjct: 1109 IINDVLCRIEQTT-----LKKVALNTALYYDPDPLNTVIQDDQEWVSIFYEILPPLDLEE 1163

Query: 1132 ISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD 1191
            ISPW+LRIE+D+KRMTDKK+TM++++EKIN  FGDDL  I+ DDNAE+LV RIRI     
Sbjct: 1164 ISPWVLRIEVDQKRMTDKKMTMQSVAEKINQNFGDDLRVIYTDDNAERLVFRIRIARGRG 1223

Query: 1192 SKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESG 1251
            SK+  EE+AVD+MEDD+FLR IE+N+L+DMTLQGIE+I KVYM LP +D KKR +I   G
Sbjct: 1224 SKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGIESISKVYMLLPSSDDKKRFVINADG 1281

Query: 1252 EFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVL 1311
            E++A+++W+LETDGTSL+KVLS+  VD  RT+SN ICEIF+VLGIEAVRK+VEKE+  V+
Sbjct: 1282 EYQAVSEWILETDGTSLLKVLSDPAVDATRTYSNHICEIFEVLGIEAVRKAVEKEIKHVI 1341

Query: 1312 QFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHA 1371
             F G YVNYRHLALLCD+MTAKGH                         VD+LM+AAAHA
Sbjct: 1342 SFDGSYVNYRHLALLCDIMTAKGH-------------------------VDILMEAAAHA 1376

Query: 1372 EADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGMFFGSAA 1430
            E D + GVSE+I++GQL R+GTG FDLLLD + CK  +E+P++     G    F    A
Sbjct: 1377 EEDLLLGVSESIMLGQLARLGTGSFDLLLDVQACKQAMEVPMSLVQGAGAKNSFLSMNA 1435



 Score =  165 bits (417), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/106 (72%), Positives = 85/106 (80%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 753  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAG 812

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
            LTPSEFFFH MGGREGLIDTAVKTAET  +   L +   +  + YD
Sbjct: 813  LTPSEFFFHTMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVAYD 858



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 107/171 (62%), Gaps = 36/171 (21%)

Query: 1511 IVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYE-MPDFDPTR 1569
            I+ D L  + + T     L KV  NTA+YYDPDP NTVI +DQE+V+++YE +P  D   
Sbjct: 1109 IINDVLCRIEQTT-----LKKVALNTALYYDPDPLNTVIQDDQEWVSIFYEILPPLDLEE 1163

Query: 1570 ISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAG 1629
            ISPW+LRIE+D+KRMTDKK+                            TM++++EKIN  
Sbjct: 1164 ISPWVLRIEVDQKRMTDKKM----------------------------TMQSVAEKINQN 1195

Query: 1630 FGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            FGDDL  I+ DDNAE+LV RIRI     SK+  EE+AVD+MEDD+FLR IE
Sbjct: 1196 FGDDLRVIYTDDNAERLVFRIRIARGRGSKL--EEEAVDRMEDDVFLRIIE 1244



 Score =  151 bits (381), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 105/170 (61%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD TVRN+ GQL+QLRYGEDGL G  VE Q + ++ LS +KF 
Sbjct: 840 GYIQRRLIKAMESVMVAYDGTVRNATGQLVQLRYGEDGLDGAMVEFQSLPSLKLSDEKFR 899

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           +KYRFD ++ER LR+IF E ++ +L+ SG V+                            
Sbjct: 900 EKYRFDLNDERLLRKIFIESIVVDLLASGGVV---------------------------- 931

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                  +EL+ E+E+L +DR  +R+IF +GE  VVLPCNL  +++  QR
Sbjct: 932 -------AELDAEFEQLSQDRRVMRDIFPTGEDKVVLPCNLRRIVWNAQR 974



 Score =  144 bits (362), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 112/325 (34%), Positives = 160/325 (49%), Gaps = 52/325 (16%)

Query: 647  HKKFEDKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNED 706
            ++ F D  R   +++   R +F   + R   G G   S+LE+E VD        RI   +
Sbjct: 1193 NQNFGDDLRVIYTDDNAERLVFRIRIAR---GRG---SKLEEEAVDRMEDDVFLRIIESN 1246

Query: 707  VLRELMGSGDVISELEKEWEKLCEDREALREIFSS-GE----SNVVLPCNLMEVIFILQR 761
            +L ++   G  I  + K +  L    +  R + ++ GE    S  +L  +   ++ +L  
Sbjct: 1247 LLTDMTLQG--IESISKVYMLLPSSDDKKRFVINADGEYQAVSEWILETDGTSLLKVLSD 1304

Query: 762  WKLWGNENL-RFLCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 817
              +         +C+I  VL   +VRK+VEKE+  V+ F G YVNYRHLALLCD+MTAKG
Sbjct: 1305 PAVDATRTYSNHICEIFEVLGIEAVRKAVEKEIKHVISFDGSYVNYRHLALLCDIMTAKG 1364

Query: 818  HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 877
            H                         VD+LM+AAAHAE D + GVSE+I++GQL R+GTG
Sbjct: 1365 H-------------------------VDILMEAAAHAEEDLLLGVSESIMLGQLARLGTG 1399

Query: 878  CFDLLLDAEKCKDGIEIPLATGMMGGPAGMFFG-SAATPSSMSPQMTPW-AQSTPAYNAL 935
             FDLLLD + CK  +E+P++     G    F   +A T  SM    T W A STP Y A+
Sbjct: 1400 SFDLLLDVQACKQAMEVPMSLVQGAGAKNSFLSMNAMTHHSMLSPTTNWMAGSTPVYKAV 1459

Query: 936  ----MSPGAAMTPGGP----GFSPS 952
                  P    +P G      FSP+
Sbjct: 1460 DWSPALPSGVFSPAGGTLENAFSPA 1484



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 37/43 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQ 72
           E++I LG  PK++RPDWM++ VLPVPPLSVRPAVV  G+ARNQ
Sbjct: 229 EDAITLGFHPKYSRPDWMIIQVLPVPPLSVRPAVVTFGNARNQ 271



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 61/127 (48%), Gaps = 49/127 (38%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            +VEKE+  V+ F G YVNYRHLALLCD+MTAKGH                         V
Sbjct: 1332 AVEKEIKHVISFDGSYVNYRHLALLCDIMTAKGH-------------------------V 1366

Query: 576  DVLMDAAAHAEADPMRGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL----- 630
            D+LM+AAAHAE D         L+   ES+M          +GQL +L  G   L     
Sbjct: 1367 DILMEAAAHAEED--------LLLGVSESIM----------LGQLARLGTGSFDLLLDVQ 1408

Query: 631  -CGEAVE 636
             C +A+E
Sbjct: 1409 ACKQAME 1415



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/38 (78%), Positives = 34/38 (89%)

Query: 1496 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVT 1533
            PR I+TPQ NRPVMGIVQDTLTA RK+TKRDVF+D+ T
Sbjct: 504  PRMILTPQANRPVMGIVQDTLTACRKLTKRDVFIDRAT 541


>gi|321468694|gb|EFX79678.1| hypothetical protein DAPPUDRAFT_304478 [Daphnia pulex]
          Length = 1441

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 293/452 (64%), Positives = 339/452 (75%), Gaps = 62/452 (13%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMP+P ILKP+P WTGKQ+F+LIIPGNVNM  THSTHPDDED G
Sbjct: 518 KEQMMNLLMFLPTWDGKMPKPAILKPRPQWTGKQLFTLIIPGNVNMMITHSTHPDDEDEG 577

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VE+G L+MGILCKK+LG S+ SLLHI F+ELGHEVCGRFYGNIQTV+
Sbjct: 578 PYKWISPGDTKVMVENGELVMGILCKKTLGASAASLLHIIFMELGHEVCGRFYGNIQTVI 637

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 638 NNWLLYEG----------------------------------------------HSIGIG 651

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           D + D  TY++IQ  I+ AKEDVIEVIQK+ N +LEPTPGNTLRQT ENQVNRIL DAR+
Sbjct: 652 DMLGDRPTYMDIQATIQNAKEDVIEVIQKSRNDELEPTPGNTLRQTLENQVNRILIDARN 711

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           +TGGSAK SLTE+NNLKAMVVAGS GSN+NISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 712 ETGGSAKNSLTEFNNLKAMVVAGSSGSNVNISQVIACVGQQNVEGKRIPFGFRKRTLPHF 771

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDD+GPESRGF      +GLTPSEF+FHAM  R+ LIDTAVKTA TGYIQR LIKAMES
Sbjct: 772 IKDDFGPESRGFG-----SGLTPSEFYFHAM-DRKALIDTAVKTANTGYIQRSLIKAMES 825

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNS G+++Q  YG DGL  E+VE Q++ TV LS++ FE K++FDPSNE   
Sbjct: 826 VMVHYDGTVRNSAGRILQFSYGGDGLSAESVELQKMPTVNLSNEAFEKKFKFDPSNE--- 882

Query: 492 LRNVSSLRRVVN---SKPLLIGCWKLTSVEKE 520
               + +RR+ N   ++ L+     +T +E E
Sbjct: 883 ----NYVRRIFNEEITRELISSAEVITEIEHE 910



 Score =  587 bits (1512), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 301/479 (62%), Positives = 356/479 (74%), Gaps = 42/479 (8%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V GED+LS QAN+NATLLFQCLVRSTLC+K +AE YRLSSEAFEWL+GEI  RFQQAQ  
Sbjct: 978  VVGEDKLSIQANQNATLLFQCLVRSTLCSKRLAEEYRLSSEAFEWLIGEIATRFQQAQAQ 1037

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P+S    
Sbjct: 1038 PGEMVGALAAQSLGEPATKMTVNTFHFAGVSSKNVTLGVAR--LKEIINISKSPKSPSMT 1095

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
               +L G   ++    A   RE L      T         L +VTANTAIYYDPDP NTV
Sbjct: 1096 --VFLRGEAATD----AEKAREVLCRLEHTT---------LRKVTANTAIYYDPDPLNTV 1140

Query: 1111 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNC 1170
            I EDQ+FVN YYEM DFDPTRISPWLLRIELDRKRMTDK+LTME I+EK+   FG+ + C
Sbjct: 1141 ILEDQDFVNFYYEMGDFDPTRISPWLLRIELDRKRMTDKRLTMEQIAEKVYTMFGNAVKC 1200

Query: 1171 IFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIG 1230
            +F+DDNAEKLVLRI+I++ DD   ++EE  V  MEDD+FLRCIE NMLSDMTLQGIE+IG
Sbjct: 1201 MFSDDNAEKLVLRIQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGIESIG 1259

Query: 1231 KVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEI 1290
            KVYMH PQTD KKRI++TE+GEFKAIA+WLLETDGT LM+VLSERDVDPVRT+SNDICEI
Sbjct: 1260 KVYMHWPQTDQKKRIVVTETGEFKAIAEWLLETDGTQLMRVLSERDVDPVRTYSNDICEI 1319

Query: 1291 FQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTG 1350
              VLGIEA RKS+++E+N+VLQ+Y LY+NYRHLALLCDVMTA GH+  I  + I+RQDTG
Sbjct: 1320 MDVLGIEAARKSIKRELNSVLQYYDLYINYRHLALLCDVMTATGHMTPI--NSIDRQDTG 1377

Query: 1351 ALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 1409
            ALM+C+ +ETV VL +AA HAE DP+RGVSEN+I+GQLPRMGTGCFDL LDAEKCK+ I
Sbjct: 1378 ALMKCTVKETVSVLSEAAGHAEVDPLRGVSENLILGQLPRMGTGCFDLFLDAEKCKNAI 1436



 Score =  179 bits (455), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/123 (66%), Positives = 104/123 (84%), Gaps = 5/123 (4%)

Query: 773  LCKIIFVLSV---RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I+ VL +   RKS+++E+N+VLQ+Y LY+NYRHLALLCDVMTA GH+  I  + I+R
Sbjct: 1316 ICEIMDVLGIEAARKSIKRELNSVLQYYDLYINYRHLALLCDVMTATGHMTPI--NSIDR 1373

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALM+C+ +ETV VL +AA HAE DP+RGVSEN+I+GQLPRMGTGCFDL LDAEKCK
Sbjct: 1374 QDTGALMKCTVKETVSVLSEAAGHAEVDPLRGVSENLILGQLPRMGTGCFDLFLDAEKCK 1433

Query: 890  DGI 892
            + I
Sbjct: 1434 NAI 1436



 Score =  176 bits (445), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/152 (61%), Positives = 107/152 (70%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP NTVI EDQ+FVN YYEM DFDPTRISPWLLRIELDRKRMTDK+
Sbjct: 1121 LRKVTANTAIYYDPDPLNTVILEDQDFVNFYYEMGDFDPTRISPWLLRIELDRKRMTDKR 1180

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EK+                   TM          FG+ + C+F+DDNAEKLVL
Sbjct: 1181 LTMEQIAEKV------------------YTM----------FGNAVKCMFSDDNAEKLVL 1212

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RI+I++ DD   ++EE  V  MEDD+FLRCIE
Sbjct: 1213 RIQILSVDDVN-EEEEQQVAHMEDDVFLRCIE 1243



 Score =  164 bits (415), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 110/170 (64%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQR LIKAMESVMVHYD TVRNS G+++Q  YG DGL  E+VE Q++ TV LS++ FE
Sbjct: 813 GYIQRSLIKAMESVMVHYDGTVRNSAGRILQFSYGGDGLSAESVELQKMPTVNLSNEAFE 872

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDPSNE  +RRIFNE++ REL+ S +VI+E+E E                      
Sbjct: 873 KKFKFDPSNENYVRRIFNEEITRELISSAEVITEIEHE---------------------- 910

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        WE+L +DREALR+IF +GE+ VVLPCNL  +I+ +Q+
Sbjct: 911 -------------WEQLYKDREALRQIFPTGENKVVLPCNLQRMIWDVQK 947



 Score =  132 bits (331), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 77/101 (76%), Gaps = 6/101 (5%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD+GPESRGF      +GLTPSEF+FHAM
Sbjct: 743  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDFGPESRGFG-----SGLTPSEFYFHAM 797

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
              R+ LIDTAVKTA T  +   L +   +  ++YD   +N+
Sbjct: 798  -DRKALIDTAVKTANTGYIQRSLIKAMESVMVHYDGTVRNS 837



 Score =  113 bits (283), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 65/77 (84%), Gaps = 2/77 (2%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            S+++E+N+VLQ+Y LY+NYRHLALLCDVMTA GH+  I  + I+RQDTGALM+C+ +ETV
Sbjct: 1331 SIKRELNSVLQYYDLYINYRHLALLCDVMTATGHMTPI--NSIDRQDTGALMKCTVKETV 1388

Query: 576  DVLMDAAAHAEADPMRG 592
             VL +AA HAE DP+RG
Sbjct: 1389 SVLSEAAGHAEVDPLRG 1405



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 33/42 (78%)

Query: 1490 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            E I +T R IITPQ N+PVMGIVQDTL    K+TKRDVFL+K
Sbjct: 477  EQILITSRLIITPQANKPVMGIVQDTLVGAYKLTKRDVFLEK 518



 Score = 41.6 bits (96), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 15/23 (65%), Positives = 20/23 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVL 52
           EE  ILGMDPK+ARP+WM+++ L
Sbjct: 220 EECAILGMDPKYARPEWMIISCL 242


>gi|393905343|gb|EFO23174.2| DNA-directed RNA polymerase II largest subunit [Loa loa]
          Length = 1870

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 286/422 (67%), Positives = 332/422 (78%), Gaps = 47/422 (11%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           +MM++LM +P WDGK+PQP ILKPKPLWTGKQVF+LIIPGNVN+ RTHSTHPDDED+GPY
Sbjct: 551 RMMDLLMQMPNWDGKVPQPAILKPKPLWTGKQVFTLIIPGNVNVLRTHSTHPDDEDNGPY 610

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           +WISPGDTKV++EHG LL GI+C +++G S+G+LLH+  LELG EV   FY +IQTVVN 
Sbjct: 611 KWISPGDTKVIIEHGELLSGIICSRTIGRSAGNLLHVVTLELGWEVAAHFYSHIQTVVNA 670

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WL+ EG                                              H+IGIGDT
Sbjct: 671 WLVAEG----------------------------------------------HTIGIGDT 684

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD  TY +IQ  I+KAK DV+EVI+KAHN +LEPTPGNTLRQTFEN VNRILNDARD+T
Sbjct: 685 IADQATYRDIQETIRKAKLDVVEVIEKAHNDELEPTPGNTLRQTFENMVNRILNDARDRT 744

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           GGSA++SL+EYNN KAMVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHFIK
Sbjct: 745 GGSAQRSLSEYNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIK 804

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM
Sbjct: 805 DDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 864

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+GQL+QLRYGEDGL G  VE+Q + ++  ++  FE +++ D S+E+ +LR
Sbjct: 865 VSYDGTVRNSLGQLVQLRYGEDGLDGMWVENQSMPSMKPTNALFEKEFKLDLSDEK-SLR 923

Query: 494 NV 495
            +
Sbjct: 924 KL 925



 Score =  583 bits (1503), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 295/481 (61%), Positives = 357/481 (74%), Gaps = 40/481 (8%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+GED++SKQA  NATLL   L+RSTLC K +AE +RL+SE FEWL+GEIE+RF+QA   
Sbjct: 1015 VSGEDRISKQAQYNATLLMNILLRSTLCAKRMAEKHRLNSEGFEWLIGEIESRFKQAIVQ 1074

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 1075 PGEMVGAIAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINVSKKPKTPSLT 1132

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
               +L G+        A    E   D   K   T      L +VTANTAIYYDPDP+NTV
Sbjct: 1133 --VFLQGI--------AAKDAEKAKDVLCKLEHTT-----LRKVTANTAIYYDPDPKNTV 1177

Query: 1111 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNC 1170
            I EDQE+VN++YEMPDFDP+R SPWLLRIELDR+RMTDKKLTMEAI++KI+ GFGDDLN 
Sbjct: 1178 IEEDQEWVNIFYEMPDFDPSRCSPWLLRIELDRRRMTDKKLTMEAIADKIHQGFGDDLNV 1237

Query: 1171 IFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIG 1230
            I+ DDNAEKLV R+RI N +  K  +E++ V++MEDD+FLRCIE NMLSD+TLQGIEAI 
Sbjct: 1238 IYTDDNAEKLVFRLRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGIEAIT 1296

Query: 1231 KVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEI 1290
            KVYMH P TD KKR++IT  G FKAI +WLLETDGT+L KVLSE++VDPVRT SNDICEI
Sbjct: 1297 KVYMHKPTTDDKKRVVITPDGGFKAIPEWLLETDGTALAKVLSEQNVDPVRTTSNDICEI 1356

Query: 1291 FQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTG 1350
            F+VLGIEAVRK++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ G
Sbjct: 1357 FEVLGIEAVRKAIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVG 1416

Query: 1351 ALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIE 1410
            ALMRCSFEET D+LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LDA+KCK  +E
Sbjct: 1417 ALMRCSFEETADILMEAAVHAEQDPVKGVSENIMLGQLARAGTGCFDLVLDADKCKLAME 1476

Query: 1411 I 1411
            I
Sbjct: 1477 I 1477



 Score =  227 bits (578), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 125/196 (63%), Positives = 149/196 (76%), Gaps = 9/196 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRK++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1353 ICEIFEVLGIEAVRKAIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 1412

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            Q+ GALMRCSFEET D+LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LDA+KCK
Sbjct: 1413 QEVGALMRCSFEETADILMEAAVHAEQDPVKGVSENIMLGQLARAGTGCFDLVLDADKCK 1472

Query: 890  DGIEIPLATGMMGGPAGMFFG--SAATPSSMSPQMTPW-AQSTPAYNALMSP--GAAMTP 944
              +EI    G++G   GM+FG   +   S+MSP  TPW A +TPAY A  SP  G+ MTP
Sbjct: 1473 LAMEIQTGGGLLGT-GGMYFGSSMSPASSAMSPAQTPWNAGTTPAYGAAWSPATGSGMTP 1531

Query: 945  GGPGFSPSVAGEDQLS 960
            GG GFSPS   E   S
Sbjct: 1532 GGAGFSPSGHSEGGFS 1547



 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 110/152 (72%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+NTVI EDQE+VN++YEMPDFDP+R SPWLLRIELDR+RMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPKNTVIEEDQEWVNIFYEMPDFDPSRCSPWLLRIELDRRRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTMEAI++KI+ GFG                            DDLN I+ DDNAEKLV 
Sbjct: 1218 LTMEAIADKIHQGFG----------------------------DDLNVIYTDDNAEKLVF 1249

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N +  K  +E++ V++MEDD+FLRCIE
Sbjct: 1250 RLRITNQESDK-GNEDEQVERMEDDVFLRCIE 1280



 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 90/113 (79%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAG
Sbjct: 763  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAG 822

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            LTPSEFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 823  LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVSYDGTVRNSL 875



 Score =  143 bits (360), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 103/170 (60%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD TVRNS+GQL+QLRYGEDGL G  VE+Q + ++  ++  FE
Sbjct: 850 GYIQRRLIKAMESVMVSYDGTVRNSLGQLVQLRYGEDGLDGMWVENQSMPSMKPTNALFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++ D S+E+ LR+++ E+V+REL GS + + E+E                        
Sbjct: 910 KEFKLDLSDEKSLRKLYTENVVRELQGSAEALKEVE------------------------ 945

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 946 -----------AEWAQLEEDRRLLRKIFPKGDAKIVLPCNLQRMIWNAQK 984



 Score =  136 bits (343), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 69/77 (89%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEET 
Sbjct: 1368 AIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETA 1427

Query: 576  DVLMDAAAHAEADPMRG 592
            D+LM+AA HAE DP++G
Sbjct: 1428 DILMEAAVHAEQDPVKG 1444



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/49 (63%), Positives = 41/49 (83%)

Query: 31  ESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           + +ILGMDP++ARPDWM+  V+PVPPL+VRPAVV  GSARNQ+ + + L
Sbjct: 224 DCLILGMDPRYARPDWMIAQVIPVPPLTVRPAVVTFGSARNQDDLTHKL 272



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 36/42 (85%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 1530
            V  I + PRQ+ITPQ N+PVMGIVQDTLTAVR MTKRDVF++
Sbjct: 507  VSEIAMVPRQLITPQANKPVMGIVQDTLTAVRMMTKRDVFIE 548


>gi|312076520|ref|XP_003140898.1| DNA-directed RNA polymerase II largest subunit [Loa loa]
          Length = 1875

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 286/422 (67%), Positives = 332/422 (78%), Gaps = 47/422 (11%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           +MM++LM +P WDGK+PQP ILKPKPLWTGKQVF+LIIPGNVN+ RTHSTHPDDED+GPY
Sbjct: 551 RMMDLLMQMPNWDGKVPQPAILKPKPLWTGKQVFTLIIPGNVNVLRTHSTHPDDEDNGPY 610

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           +WISPGDTKV++EHG LL GI+C +++G S+G+LLH+  LELG EV   FY +IQTVVN 
Sbjct: 611 KWISPGDTKVIIEHGELLSGIICSRTIGRSAGNLLHVVTLELGWEVAAHFYSHIQTVVNA 670

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WL+ EG                                              H+IGIGDT
Sbjct: 671 WLVAEG----------------------------------------------HTIGIGDT 684

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD  TY +IQ  I+KAK DV+EVI+KAHN +LEPTPGNTLRQTFEN VNRILNDARD+T
Sbjct: 685 IADQATYRDIQETIRKAKLDVVEVIEKAHNDELEPTPGNTLRQTFENMVNRILNDARDRT 744

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           GGSA++SL+EYNN KAMVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHFIK
Sbjct: 745 GGSAQRSLSEYNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIK 804

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM
Sbjct: 805 DDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 864

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V YD TVRNS+GQL+QLRYGEDGL G  VE+Q + ++  ++  FE +++ D S+E+ +LR
Sbjct: 865 VSYDGTVRNSLGQLVQLRYGEDGLDGMWVENQSMPSMKPTNALFEKEFKLDLSDEK-SLR 923

Query: 494 NV 495
            +
Sbjct: 924 KL 925



 Score =  583 bits (1503), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 295/481 (61%), Positives = 357/481 (74%), Gaps = 40/481 (8%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+GED++SKQA  NATLL   L+RSTLC K +AE +RL+SE FEWL+GEIE+RF+QA   
Sbjct: 1020 VSGEDRISKQAQYNATLLMNILLRSTLCAKRMAEKHRLNSEGFEWLIGEIESRFKQAIVQ 1079

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 1080 PGEMVGAIAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINVSKKPKTPSLT 1137

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
               +L G+        A    E   D   K   T      L +VTANTAIYYDPDP+NTV
Sbjct: 1138 --VFLQGI--------AAKDAEKAKDVLCKLEHTT-----LRKVTANTAIYYDPDPKNTV 1182

Query: 1111 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNC 1170
            I EDQE+VN++YEMPDFDP+R SPWLLRIELDR+RMTDKKLTMEAI++KI+ GFGDDLN 
Sbjct: 1183 IEEDQEWVNIFYEMPDFDPSRCSPWLLRIELDRRRMTDKKLTMEAIADKIHQGFGDDLNV 1242

Query: 1171 IFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIG 1230
            I+ DDNAEKLV R+RI N +  K  +E++ V++MEDD+FLRCIE NMLSD+TLQGIEAI 
Sbjct: 1243 IYTDDNAEKLVFRLRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGIEAIT 1301

Query: 1231 KVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEI 1290
            KVYMH P TD KKR++IT  G FKAI +WLLETDGT+L KVLSE++VDPVRT SNDICEI
Sbjct: 1302 KVYMHKPTTDDKKRVVITPDGGFKAIPEWLLETDGTALAKVLSEQNVDPVRTTSNDICEI 1361

Query: 1291 FQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTG 1350
            F+VLGIEAVRK++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ G
Sbjct: 1362 FEVLGIEAVRKAIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVG 1421

Query: 1351 ALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIE 1410
            ALMRCSFEET D+LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LDA+KCK  +E
Sbjct: 1422 ALMRCSFEETADILMEAAVHAEQDPVKGVSENIMLGQLARAGTGCFDLVLDADKCKLAME 1481

Query: 1411 I 1411
            I
Sbjct: 1482 I 1482



 Score =  227 bits (578), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 125/196 (63%), Positives = 149/196 (76%), Gaps = 9/196 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRK++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1358 ICEIFEVLGIEAVRKAIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 1417

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            Q+ GALMRCSFEET D+LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LDA+KCK
Sbjct: 1418 QEVGALMRCSFEETADILMEAAVHAEQDPVKGVSENIMLGQLARAGTGCFDLVLDADKCK 1477

Query: 890  DGIEIPLATGMMGGPAGMFFG--SAATPSSMSPQMTPW-AQSTPAYNALMSP--GAAMTP 944
              +EI    G++G   GM+FG   +   S+MSP  TPW A +TPAY A  SP  G+ MTP
Sbjct: 1478 LAMEIQTGGGLLGT-GGMYFGSSMSPASSAMSPAQTPWNAGTTPAYGAAWSPATGSGMTP 1536

Query: 945  GGPGFSPSVAGEDQLS 960
            GG GFSPS   E   S
Sbjct: 1537 GGAGFSPSGHSEGGFS 1552



 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 110/152 (72%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+NTVI EDQE+VN++YEMPDFDP+R SPWLLRIELDR+RMTDKK
Sbjct: 1163 LRKVTANTAIYYDPDPKNTVIEEDQEWVNIFYEMPDFDPSRCSPWLLRIELDRRRMTDKK 1222

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTMEAI++KI+ GFG                            DDLN I+ DDNAEKLV 
Sbjct: 1223 LTMEAIADKIHQGFG----------------------------DDLNVIYTDDNAEKLVF 1254

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N +  K  +E++ V++MEDD+FLRCIE
Sbjct: 1255 RLRITNQESDK-GNEDEQVERMEDDVFLRCIE 1285



 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 90/113 (79%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAG
Sbjct: 763  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAG 822

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            LTPSEFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 823  LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVSYDGTVRNSL 875



 Score =  137 bits (344), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 74/175 (42%), Positives = 103/175 (58%), Gaps = 40/175 (22%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD TVRNS+GQL+QLRYGEDGL G  VE+Q + ++  ++  FE
Sbjct: 850 GYIQRRLIKAMESVMVSYDGTVRNSLGQLVQLRYGEDGLDGMWVENQSMPSMKPTNALFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++ D S+E+ LR+++ E+V+REL GS + + E+                         
Sbjct: 910 KEFKLDLSDEKSLRKLYTENVVRELQGSAEALKEV------------------------- 944

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSS-----GESNVVLPCNLMEVIFILQR 761
                     E EW +L EDR  LR+IF       G++ +VLPCNL  +I+  Q+
Sbjct: 945 ----------EAEWAQLEEDRRLLRKIFPKAIHLLGDAKIVLPCNLQRMIWNAQK 989



 Score =  136 bits (343), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 69/77 (89%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEET 
Sbjct: 1373 AIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETA 1432

Query: 576  DVLMDAAAHAEADPMRG 592
            D+LM+AA HAE DP++G
Sbjct: 1433 DILMEAAVHAEQDPVKG 1449



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/49 (63%), Positives = 41/49 (83%)

Query: 31  ESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           + +ILGMDP++ARPDWM+  V+PVPPL+VRPAVV  GSARNQ+ + + L
Sbjct: 224 DCLILGMDPRYARPDWMIAQVIPVPPLTVRPAVVTFGSARNQDDLTHKL 272



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 36/42 (85%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 1530
            V  I + PRQ+ITPQ N+PVMGIVQDTLTAVR MTKRDVF++
Sbjct: 507  VSEIAMVPRQLITPQANKPVMGIVQDTLTAVRMMTKRDVFIE 548


>gi|321468525|gb|EFX79509.1| hypothetical protein DAPPUDRAFT_319347 [Daphnia pulex]
          Length = 1459

 Score =  588 bits (1516), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 300/480 (62%), Positives = 358/480 (74%), Gaps = 42/480 (8%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V GED+LS QAN+NATLLFQCLVRSTLC+K +AE YRLSSEAFEWL+G+IE RFQQAQ  
Sbjct: 996  VVGEDKLSIQANQNATLLFQCLVRSTLCSKRIAEEYRLSSEAFEWLIGKIETRFQQAQAQ 1055

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P+S    
Sbjct: 1056 PGEMVGALAAQSLGQPATQMTLNTFHFAGVSSKNVTLGVAR--LKEIINISKSPKSPSMT 1113

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
               +L G   ++    A   RE L      T         L +VTANTAIYYDPDP NTV
Sbjct: 1114 --VFLRGEAATD----AEKAREVLCRLEHTT---------LRKVTANTAIYYDPDPLNTV 1158

Query: 1111 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNC 1170
            I EDQE VNVYYE+PDF+PTR+SPWLLRIE DRKRMTDK+LTME I+EK+   FG+ + C
Sbjct: 1159 ILEDQELVNVYYELPDFNPTRLSPWLLRIEFDRKRMTDKRLTMEQIAEKVYTMFGNAVKC 1218

Query: 1171 IFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIG 1230
            +F+DDNAEKLVLRI+I++ DD   ++EE  V  MEDD+FLRCIE NMLSDMTLQGIE+IG
Sbjct: 1219 MFSDDNAEKLVLRIQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGIESIG 1277

Query: 1231 KVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEI 1290
            KVYMH PQTD KKRI++TE+GEFKAIA+WLLETDGT LM+VLSERDVDPVRT+SNDICEI
Sbjct: 1278 KVYMHWPQTDQKKRIVVTETGEFKAIAEWLLETDGTQLMRVLSERDVDPVRTYSNDICEI 1337

Query: 1291 FQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTG 1350
              VLGIEA RKS+++E+N+VLQ+Y LY+NYRHLALLCDVMTA GH+  I  + I+RQDTG
Sbjct: 1338 MDVLGIEAARKSIKRELNSVLQYYDLYINYRHLALLCDVMTATGHMTPI--NSIDRQDTG 1395

Query: 1351 ALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIE 1410
            ALM+C+ +ETV VL +AA HAE DP+RGVSEN+I+GQLPRMGTGCFDL LDAEKCK+ IE
Sbjct: 1396 ALMKCTVKETVSVLSEAAGHAEVDPLRGVSENLILGQLPRMGTGCFDLFLDAEKCKNAIE 1455



 Score =  560 bits (1444), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 284/452 (62%), Positives = 333/452 (73%), Gaps = 57/452 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMP+P ILKP+PLWTGKQ+F+LIIPGNVNM RTHSTHPDDED G
Sbjct: 531 KEQMMNLLMFLPTWDGKMPKPAILKPRPLWTGKQLFTLIIPGNVNMMRTHSTHPDDEDEG 590

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKVV+E+G L+MGILCKK+LG S+ SLLHI F+ELGHEVCGRFYGNIQTV+
Sbjct: 591 PYKWISPGDTKVVIENGELVMGILCKKTLGASAASLLHIIFMELGHEVCGRFYGNIQTVI 650

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 651 NNWLLYEG----------------------------------------------HSIGIG 664

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           D +AD QTYL IQ  I+ AKEDVIEV+Q++ N +LEPTPGNTLRQTFENQV RI+ DA++
Sbjct: 665 DMLADHQTYLNIQATIQNAKEDVIEVLQRSQNDELEPTPGNTLRQTFENQVLRIIYDAQE 724

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           +    AK SLTEYNNLKAM VAGS GS+I  SQ IACVGQQNVEG+RIPFGFRKRTLPHF
Sbjct: 725 QASDLAKNSLTEYNNLKAMAVAGSSGSSITTSQAIACVGQQNVEGQRIPFGFRKRTLPHF 784

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDD GPESRGFVENSY++GLTPSEF+FHAM GRE LI      +ETG I R+L+K MES
Sbjct: 785 IKDDNGPESRGFVENSYVSGLTPSEFYFHAMAGRELLIYETRIKSETGII-RQLVKGMES 843

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNS G+++Q  YGEDGL  E+VE Q++ TV LS+  FE K++FDPSNE   
Sbjct: 844 VMVHYDGTVRNSAGRILQFSYGEDGLAAESVELQKMPTVKLSNSVFEKKFKFDPSNE--- 900

Query: 492 LRNVSSLRRVVN---SKPLLIGCWKLTSVEKE 520
               + +RR+ N   ++ L+     +T +E E
Sbjct: 901 ----NYVRRIFNEEITRELISSAEVITEIEHE 928



 Score =  181 bits (459), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 83/124 (66%), Positives = 105/124 (84%), Gaps = 5/124 (4%)

Query: 773  LCKIIFVLSV---RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I+ VL +   RKS+++E+N+VLQ+Y LY+NYRHLALLCDVMTA GH+  I  + I+R
Sbjct: 1334 ICEIMDVLGIEAARKSIKRELNSVLQYYDLYINYRHLALLCDVMTATGHMTPI--NSIDR 1391

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            QDTGALM+C+ +ETV VL +AA HAE DP+RGVSEN+I+GQLPRMGTGCFDL LDAEKCK
Sbjct: 1392 QDTGALMKCTVKETVSVLSEAAGHAEVDPLRGVSENLILGQLPRMGTGCFDLFLDAEKCK 1451

Query: 890  DGIE 893
            + IE
Sbjct: 1452 NAIE 1455



 Score =  174 bits (441), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 91/152 (59%), Positives = 107/152 (70%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP NTVI EDQE VNVYYE+PDF+PTR+SPWLLRIE DRKRMTDK+
Sbjct: 1139 LRKVTANTAIYYDPDPLNTVILEDQELVNVYYELPDFNPTRLSPWLLRIEFDRKRMTDKR 1198

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EK+                   TM          FG+ + C+F+DDNAEKLVL
Sbjct: 1199 LTMEQIAEKV------------------YTM----------FGNAVKCMFSDDNAEKLVL 1230

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RI+I++ DD   ++EE  V  MEDD+FLRCIE
Sbjct: 1231 RIQILSVDDVN-EEEEQQVAHMEDDIFLRCIE 1261



 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 107/168 (63%), Gaps = 35/168 (20%)

Query: 594 IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDK 653
           I R+L+K MESVMVHYD TVRNS G+++Q  YGEDGL  E+VE Q++ TV LS+  FE K
Sbjct: 833 IIRQLVKGMESVMVHYDGTVRNSAGRILQFSYGEDGLAAESVELQKMPTVKLSNSVFEKK 892

Query: 654 YRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMG 713
           ++FDPSNE  +RRIFNE++ REL+ S +VI+E+E E                        
Sbjct: 893 FKFDPSNENYVRRIFNEEITRELISSAEVITEIEHE------------------------ 928

Query: 714 SGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      WE+L +DREALR+IF +GE+ VVLPCNL  +I+ +Q+
Sbjct: 929 -----------WEQLYKDREALRQIFPTGENKVVLPCNLQRMIWDVQK 965



 Score =  134 bits (338), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/100 (64%), Positives = 77/100 (77%), Gaps = 1/100 (1%)

Query: 1010 QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 1069
            Q IACVGQQNVEG+RIPFGFRKRTLPHFIKDD GPESRGFVENSY++GLTPSEF+FHAM 
Sbjct: 757  QAIACVGQQNVEGQRIPFGFRKRTLPHFIKDDNGPESRGFVENSYVSGLTPSEFYFHAMA 816

Query: 1070 GREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            GRE LI      +ET  ++  L +   +  ++YD   +N+
Sbjct: 817  GRELLIYETRIKSET-GIIRQLVKGMESVMVHYDGTVRNS 855



 Score =  113 bits (283), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 65/77 (84%), Gaps = 2/77 (2%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            S+++E+N+VLQ+Y LY+NYRHLALLCDVMTA GH+  I  + I+RQDTGALM+C+ +ETV
Sbjct: 1349 SIKRELNSVLQYYDLYINYRHLALLCDVMTATGHMTPI--NSIDRQDTGALMKCTVKETV 1406

Query: 576  DVLMDAAAHAEADPMRG 592
             VL +AA HAE DP+RG
Sbjct: 1407 SVLSEAAGHAEVDPLRG 1423



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 36/43 (83%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENI +TPRQIITPQ N+PVMGIVQDTL    K+TKRDVFL K
Sbjct: 489  VENILLTPRQIITPQANKPVMGIVQDTLVGTSKLTKRDVFLQK 531



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 38/51 (74%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILM 80
           E+  ILGMDPK+ARPDWM++T LPVPP SVRPAVV    +  Q+ + + L+
Sbjct: 212 EDCAILGMDPKYARPDWMILTCLPVPPPSVRPAVVTRDFSIRQDDITDKLV 262


>gi|324499938|gb|ADY39985.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
          Length = 1867

 Score =  588 bits (1515), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 303/487 (62%), Positives = 364/487 (74%), Gaps = 52/487 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+G+D++SKQA  NATLL   L+RSTLC+K +AE ++L+ EAFEWL+GEIE+RF+QA   
Sbjct: 1015 VSGDDRISKQAQYNATLLMNILLRSTLCSKRMAEKHKLNMEAFEWLIGEIESRFKQAIVQ 1074

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1075 PGEMVGAIAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINVSKKPK----- 1127

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                    TPS   F        L  TA K AE   +VL       L +VTANTAIYYDP
Sbjct: 1128 --------TPSLTVF--------LTGTAAKDAEKAKDVLCKLEHTTLRKVTANTAIYYDP 1171

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DP+NTVI ED+E+VN++YEMPDFDP+R SPWLLRIELDRKRMTDKKLTMEAI++KI+ GF
Sbjct: 1172 DPKNTVIEEDEEWVNIFYEMPDFDPSRASPWLLRIELDRKRMTDKKLTMEAIADKIHHGF 1231

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLN I+ DDNAEKLV R+RI N D  K  +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ
Sbjct: 1232 GDDLNVIYTDDNAEKLVFRLRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQ 1290

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE+I KVYMH P TD KKR++IT  G FKAI +WLLETDGT+L KVLSE++VD VRT S
Sbjct: 1291 GIESITKVYMHKPTTDDKKRVVITPDGGFKAIPEWLLETDGTALAKVLSEQNVDSVRTTS 1350

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIF+VLGIEAVRK++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 1351 NDICEIFEVLGIEAVRKAIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 1410

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQ+ GALMRCSFEETVD+LM+AAAHAE DP++GVSENI++GQL R GTGCFDL+LDA+K
Sbjct: 1411 NRQEVGALMRCSFEETVDILMEAAAHAEQDPVKGVSENIMLGQLARAGTGCFDLVLDADK 1470

Query: 1405 CKDGIEI 1411
            CK G+EI
Sbjct: 1471 CKLGMEI 1477



 Score =  587 bits (1514), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 283/416 (68%), Positives = 327/416 (78%), Gaps = 46/416 (11%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           +MM++LM +P WDGK+PQP ILKPKPLWTGKQVF+LIIPGNVN+ RTHSTHPDDEDSGPY
Sbjct: 551 RMMDLLMQMPNWDGKIPQPAILKPKPLWTGKQVFTLIIPGNVNVLRTHSTHPDDEDSGPY 610

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           +WISPGDTKV++EHG LL GI+C K++G S+G+LLH+  LELG EV   FY +IQT VN 
Sbjct: 611 KWISPGDTKVIIEHGELLAGIICSKTIGRSAGNLLHVVTLELGWEVAAHFYSHIQTTVNA 670

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL EG                                              H+IGIGDT
Sbjct: 671 WLLAEG----------------------------------------------HTIGIGDT 684

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD  TY +IQ  I+KAK DV+EVI+KAHN +LEPTPGNTLRQTFEN VNRILNDARD+T
Sbjct: 685 IADQATYKDIQETIRKAKYDVVEVIEKAHNDELEPTPGNTLRQTFENMVNRILNDARDRT 744

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           GGSA++SL+E+NN KAMVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHFIK
Sbjct: 745 GGSAQRSLSEFNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIK 804

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM
Sbjct: 805 DDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 864

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           V+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + ++  ++  FE +++ D S+E+
Sbjct: 865 VNYDGTVRNSIAQMVQLRYGEDGLDGMWVENQSMPSMKPTNALFEKEFKLDLSDEK 920



 Score =  223 bits (567), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 125/195 (64%), Positives = 148/195 (75%), Gaps = 7/195 (3%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRK++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1353 ICEIFEVLGIEAVRKAIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 1412

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            Q+ GALMRCSFEETVD+LM+AAAHAE DP++GVSENI++GQL R GTGCFDL+LDA+KCK
Sbjct: 1413 QEVGALMRCSFEETVDILMEAAAHAEQDPVKGVSENIMLGQLARAGTGCFDLVLDADKCK 1472

Query: 890  DGIEI-PLATGMMGGPAGMFFGSAATPSSMSPQMTPW-AQSTPAYNALMSP--GAAMTPG 945
             G+EI   +  + GG      G++   SSMSP  TPW A +TPAY A  SP  G+ MTPG
Sbjct: 1473 LGMEIQAGSGLLGGGGMYFAGGASPASSSMSPAQTPWNAATTPAYGAAWSPAVGSGMTPG 1532

Query: 946  GPGFSPSVAGEDQLS 960
              GFSPS   E   S
Sbjct: 1533 VAGFSPSGHSEGGFS 1547



 Score =  190 bits (483), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 98/165 (59%), Positives = 115/165 (69%), Gaps = 29/165 (17%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+NTVI ED+E+VN++YEMPDFDP+R SPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPKNTVIEEDEEWVNIFYEMPDFDPSRASPWLLRIELDRKRMTDKK 1217

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTMEAI++KI+ GFG                            DDLN I+ DDNAEKLV 
Sbjct: 1218 LTMEAIADKIHHGFG----------------------------DDLNVIYTDDNAEKLVF 1249

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEETDRSFVKVDFVE 1693
            R+RI N D  K  +EE+ VDKMEDD+FLRCIE    S + +  +E
Sbjct: 1250 RLRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGIE 1293



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 90/113 (79%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAG
Sbjct: 763  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAG 822

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            LTPSEFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 823  LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSI 875



 Score =  140 bits (352), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 103/170 (60%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + ++  ++  FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSIAQMVQLRYGEDGLDGMWVENQSMPSMKPTNALFE 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++ D S+E+ LR+++ E+V+R+L GS + + E+E                        
Sbjct: 910 KEFKLDLSDEKSLRKMYTENVIRDLQGSAEALKEVE------------------------ 945

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 946 -----------SEWAQLEEDRRLLRKIFPKGDAKIVLPCNLQRLIWNAQK 984



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/77 (80%), Positives = 71/77 (92%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETV
Sbjct: 1368 AIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETV 1427

Query: 576  DVLMDAAAHAEADPMRG 592
            D+LM+AAAHAE DP++G
Sbjct: 1428 DILMEAAAHAEQDPVKG 1444



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/49 (63%), Positives = 41/49 (83%)

Query: 31  ESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           + +++GMDP+FARPDWM+  VLPVPPL+VRPAVV  GSARNQ+ + + L
Sbjct: 224 DCLVIGMDPRFARPDWMIAQVLPVPPLAVRPAVVTFGSARNQDDLTHKL 272



 Score = 67.4 bits (163), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 36/42 (85%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 1530
            +  I + PRQ+ITPQ N+PVMGIVQDTLTAVR MTKRDVF++
Sbjct: 507  ISEIAMVPRQLITPQANKPVMGIVQDTLTAVRMMTKRDVFIE 548


>gi|316997013|dbj|BAJ52634.1| RNA polymerase II largest subunit [Ephydatia fluviatilis]
          Length = 1146

 Score =  587 bits (1514), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 301/511 (58%), Positives = 365/511 (71%), Gaps = 49/511 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V GED +SK+A ENATLLF CL+RSTLC++ VAE ++L+ EAFEW++G IE RF+QAQ  
Sbjct: 525  VGGEDDISKEAQENATLLFNCLLRSTLCSRRVAEEHKLTKEAFEWVLGXIEARFKQAQAH 584

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 585  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINVSKRPK----- 637

Query: 1051 ENSYLAGLTPSEFFF---HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQ 1107
                    TPS   F    A  G E   D   +   T      L +VTANTAIYYDPDPQ
Sbjct: 638  --------TPSLTIFLKGQAAKGAERCKDVLCRIEYTT-----LRKVTANTAIYYDPDPQ 684

Query: 1108 NTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
            +TVI EDQEFV++YYEMPDFDPTRISPWLLR+ELDRKRMTDKKLTME I+EK+++ FG+D
Sbjct: 685  HTVIAEDQEFVSIYYEMPDFDPTRISPWLLRLELDRKRMTDKKLTMEQIAEKVSSHFGED 744

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQGI 1226
            LNC++ DDN+EKL LRIR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQGI
Sbjct: 745  LNCMYTDDNSEKLALRIRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804

Query: 1227 EAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSND 1286
            E I KVYMH P  DSKKRII+ + G+FKAI +W+LETDG +L++VLSE  VDPVRT SN 
Sbjct: 805  EQIAKVYMHYPTQDSKKRIIVNDEGQFKAIQEWILETDGVNLIRVLSEPSVDPVRTTSNH 864

Query: 1287 ICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1346
            I EIF VLGIEAVRK+VEKE++ V+ F G YVNYRHLALLCD+MT +GHLMAITRHG+NR
Sbjct: 865  IVEIFSVLGIEAVRKAVEKELHHVISFDGSYVNYRHLALLCDIMTCRGHLMAITRHGVNR 924

Query: 1347 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1406
            QD GALMRCSFEETVD+L++AA H E D MRGVSE I++GQ+ + GTG  DLLLDAEKCK
Sbjct: 925  QDVGALMRCSFEETVDILVEAAVHCEVDKMRGVSECIMLGQIHKGGTGAVDLLLDAEKCK 984

Query: 1407 DGIEIPLATGMMGGPAGMFFGSAATPSSIPG 1437
             G+EIP  TG+  GP   F+GS  TP+   G
Sbjct: 985  HGMEIPTNTGLGVGP---FYGSGMTPTGAGG 1012



 Score =  563 bits (1451), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 282/443 (63%), Positives = 330/443 (74%), Gaps = 57/443 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +E +MN+LM+LP WDGK+P+P ILKPK LWTGKQ+FSLIIP N+NM +THSTHPDDED G
Sbjct: 56  KESVMNLLMWLPSWDGKVPRPAILKPKQLWTGKQIFSLIIPSNINMIKTHSTHPDDEDDG 115

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY++ISPGDTKV+VE+G LL GIL K +LG   GSL+H+ FLE G EV   FYG+IQTVV
Sbjct: 116 PYKFISPGDTKVIVENGDLLCGILSKDTLGNKGGSLMHLVFLEKGVEVARDFYGSIQTVV 175

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NN+LLLEG                                              HSIGIG
Sbjct: 176 NNYLLLEG----------------------------------------------HSIGIG 189

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD  TY EIQ  I++AK DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILN+ARD
Sbjct: 190 DTIADKVTYDEIQKTIRQAKFDVIEVIKKAHNNELEPTPGNTLRQTFENQVNRILNEARD 249

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+++NN K MV AGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHF
Sbjct: 250 KTGSSAQKSLSDFNNFKVMVSAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHF 309

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDD+GPES+GFVENSYLAGLTP+EF+FHAMGGREGLIDTAVKT+ETGYIQRRLIKAME 
Sbjct: 310 IKDDFGPESKGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTSETGYIQRRLIKAMEG 369

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD---PSNE 488
           +MVHYD T+RNS  Q+IQLRYGEDG+ G  +E Q++ T+  S   FE K++ D   P+ +
Sbjct: 370 LMVHYDGTIRNSNKQMIQLRYGEDGMDGCFMEFQQLPTIKPSSSAFEKKFKLDCTTPTGQ 429

Query: 489 R--------PTLRNVSSLRRVVN 503
           R        P +R +++   V N
Sbjct: 430 RDLHRWFEEPIVRKLTTDTEVQN 452



 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 107/184 (58%), Positives = 131/184 (71%), Gaps = 8/184 (4%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + +VRK+VEKE++ V+ F G YVNYRHLALLCD+MT +GHLMAITRHG+NRQD GAL
Sbjct: 871  VLGIEAVRKAVEKELHHVISFDGSYVNYRHLALLCDIMTCRGHLMAITRHGVNRQDVGAL 930

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
            MRCSFEETVD+L++AA H E D MRGVSE I++GQ+ + GTG  DLLLDAEKCK G+EIP
Sbjct: 931  MRCSFEETVDILVEAAVHCEVDKMRGVSECIMLGQIHKGGTGAVDLLLDAEKCKHGMEIP 990

Query: 896  LATGMMGGPAGMFFGSAATPSSMSP-QMTPW-AQSTPAYNALMSP--GAAMTP-GGPGFS 950
              TG+  GP   F+GS  TP+      MTPW    TP       P  G  MTP  G  FS
Sbjct: 991  TNTGLGVGP---FYGSGMTPTGAGGMAMTPWLGAQTPTLEPWTGPSMGPGMTPSAGAAFS 1047

Query: 951  PSVA 954
            P+ +
Sbjct: 1048 PAAS 1051



 Score =  198 bits (503), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 97/153 (63%), Positives = 114/153 (74%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ+TVI EDQEFV++YYEMPDFDPTRISPWLLR+ELDRKRMTDKK
Sbjct: 668  LRKVTANTAIYYDPDPQHTVIAEDQEFVSIYYEMPDFDPTRISPWLLRLELDRKRMTDKK 727

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EK+++ F                            G+DLNC++ DDN+EKL L
Sbjct: 728  LTMEQIAEKVSSHF----------------------------GEDLNCMYTDDNSEKLAL 759

Query: 1649 RIRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIE 1680
            RIR+++SDD K Q E E+ VDKMEDDMFLRC+E
Sbjct: 760  RIRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLE 792



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 88/111 (79%)

Query: 999  VGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 1058
             G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDD+GPES+GFVENSYLAGL
Sbjct: 271  AGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDFGPESKGFVENSYLAGL 330

Query: 1059 TPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            TP+EF+FHAMGGREGLIDTAVKT+ET  +   L +      ++YD   +N+
Sbjct: 331  TPTEFYFHAMGGREGLIDTAVKTSETGYIQRRLIKAMEGLMVHYDGTIRNS 381



 Score =  130 bits (327), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 67/77 (87%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
           +VEKE++ V+ F G YVNYRHLALLCD+MT +GHLMAITRHG+NRQD GALMRCSFEETV
Sbjct: 880 AVEKELHHVISFDGSYVNYRHLALLCDIMTCRGHLMAITRHGVNRQDVGALMRCSFEETV 939

Query: 576 DVLMDAAAHAEADPMRG 592
           D+L++AA H E D MRG
Sbjct: 940 DILVEAAVHCEVDKMRG 956



 Score =  122 bits (306), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/192 (40%), Positives = 104/192 (54%), Gaps = 42/192 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAME +MVHYD T+RNS  Q+IQLRYGEDG+ G  +E Q++ T+  S   FE
Sbjct: 357 GYIQRRLIKAMEGLMVHYDGTIRNSNKQMIQLRYGEDGMDGCFMEFQQLPTIKPSSSAFE 416

Query: 652 DKYRFD---PSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVL 708
            K++ D   P+ +R L R F E ++R+L    +V                      ++++
Sbjct: 417 KKFKLDCTTPTGQRDLHRWFEEPIVRKLTTDTEV----------------------QNIV 454

Query: 709 RELMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR---WKLW 765
                         KE+EKL EDR ALR IF SG S V LP NL  +I+  Q+     L 
Sbjct: 455 M-------------KEFEKLKEDRIALRSIFPSGNSRVALPVNLSRLIWNAQKIFHINLR 501

Query: 766 GNENLRFLCKII 777
           G  +L   CK+I
Sbjct: 502 GRSDLD-PCKVI 512



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 1497 RQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            R I+TPQ+N+PVMGIVQD+LTA  KMTKRDVFL+K +    + + P
Sbjct: 22   RNILTPQSNQPVMGIVQDSLTAATKMTKRDVFLEKESVMNLLMWLP 67


>gi|392898787|ref|NP_500523.4| Protein AMA-1 [Caenorhabditis elegans]
 gi|380865455|sp|P16356.3|RPB1_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
           Short=RNA polymerase II subunit B1; AltName:
           Full=DNA-directed RNA polymerase III largest subunit
 gi|351061691|emb|CCD69532.1| Protein AMA-1 [Caenorhabditis elegans]
          Length = 1856

 Score =  587 bits (1514), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 282/422 (66%), Positives = 331/422 (78%), Gaps = 46/422 (10%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           MM++LM+LP WDGK+PQP ILKPKPLWTGKQVFSLIIPGNVN+ RTHSTHPD EDSGPY+
Sbjct: 554 MMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYK 613

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           WISPGDTKV++EHG LL GI+C K++G S+G+LLH+  LELG+E+   FY +IQTV+N W
Sbjct: 614 WISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAW 673

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           L+ EG                                              H+IGIGDTI
Sbjct: 674 LIREG----------------------------------------------HTIGIGDTI 687

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD  TYL+IQ  I+KAK+DV++VI+KAHN DLEPTPGNTLRQTFEN+VN+ILNDARD+TG
Sbjct: 688 ADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTG 747

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E+NN K+MVV+GSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHFIKD
Sbjct: 748 SSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKD 807

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV
Sbjct: 808 DYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 867

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLRN 494
           +YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE  +R D ++ +   +N
Sbjct: 868 NYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKN 927

Query: 495 VS 496
            S
Sbjct: 928 YS 929



 Score =  570 bits (1469), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 297/499 (59%), Positives = 357/499 (71%), Gaps = 17/499 (3%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
            V+G D++SKQA  NATLL   L+RSTLCTK +    +L+SEAF+WL+GEIE+RFQQA  Q
Sbjct: 1017 VSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQ 1076

Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-----VENSYLAGLTPSEFFF 1065
                VG    +    P         H+        + G      + N      TPS   F
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVF 1136

Query: 1066 ---HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
                A    E   D   K   T      L +VT NTAIYYDPDP+NTVI ED+E+V+++Y
Sbjct: 1137 LTGAAAKDPEKAKDVLCKLEHTT-----LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFY 1191

Query: 1123 EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1182
            EMPD D +R SPWLLRIELDRKRM DKKLTME I+++I+ GFG+D++ I+ DDNAEKLV 
Sbjct: 1192 EMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVF 1251

Query: 1183 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1242
            R+RI   D  + Q+E+  VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD K
Sbjct: 1252 RLRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDK 1309

Query: 1243 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1302
            KRIIIT  G FK++ADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK+
Sbjct: 1310 KRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKA 1369

Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1362
            +E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD
Sbjct: 1370 IEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVD 1429

Query: 1363 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPA 1422
            +LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK G+EIP    M GG  
Sbjct: 1430 ILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFY 1489

Query: 1423 GMFFGSAATPSSIPGPPAW 1441
            G F GS +     P    W
Sbjct: 1490 GSFAGSPSNREFSPAHSPW 1508



 Score =  226 bits (576), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 117/186 (62%), Positives = 138/186 (74%), Gaps = 8/186 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            Q+ GALMRCSFEETVD+LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK
Sbjct: 1414 QEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCK 1473

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAY-NALMSP-GAAMTPGG 946
             G+EIP    M GG  G F GS +     SP  +PW    TP Y  A  SP    M+PG 
Sbjct: 1474 YGMEIPQNVVMGGGFYGSFAGSPSN-REFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA 1532

Query: 947  PGFSPS 952
             GFSP+
Sbjct: 1533 -GFSPA 1537



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/152 (55%), Positives = 105/152 (69%), Gaps = 30/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKK
Sbjct: 1160 LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKK 1219

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+ GFG+D++T                            I+ DDNAEKLV 
Sbjct: 1220 LTMEMIADRIHGGFGNDVHT----------------------------IYTDDNAEKLVF 1251

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   D  + Q+E+  VDKMEDD+FLRCIE
Sbjct: 1252 RLRIAGEDKGEAQEEQ--VDKMEDDVFLRCIE 1281



 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/111 (70%), Positives = 89/111 (80%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLT
Sbjct: 767  GSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLT 826

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            PSEFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 827  PSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSL 877



 Score =  137 bits (344), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 70/77 (90%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETV
Sbjct: 1369 AIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETV 1428

Query: 576  DVLMDAAAHAEADPMRG 592
            D+LM+AA HAE DP++G
Sbjct: 1429 DILMEAAVHAEEDPVKG 1445



 Score =  133 bits (334), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 100/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 852 GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 911

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++ + LR+ ++EDV+RE+  S D IS +E                        
Sbjct: 912 RDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVE------------------------ 947

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 948 -----------SEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQK 986



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           E+ +++GMDP+FARP+WM+ TVLPVPPL+VRPAVV  GSA+NQ+ + + L
Sbjct: 225 EDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKL 274



 Score = 68.9 bits (167), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 36/42 (85%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 1530
            +E I + PRQ+ITPQ N+PVMGIVQDTL AVR MTKRDVF+D
Sbjct: 509  IEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550


>gi|402590450|gb|EJW84380.1| DNA-directed RNA polymerase, partial [Wuchereria bancrofti]
          Length = 1251

 Score =  587 bits (1514), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 299/487 (61%), Positives = 361/487 (74%), Gaps = 52/487 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+GED++SKQA  NATLL   L+RSTLC K +AE +RL+SE FEWL+GEIE+RF+QA   
Sbjct: 396  VSGEDRISKQAQYNATLLMNILLRSTLCAKRMAEKHRLNSEGFEWLIGEIESRFKQAIVQ 455

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 456  PGEMVGAIAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINVSKKPK----- 508

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                    TPS   F        L  TA K AE   +VL       L +VTANTAIYYDP
Sbjct: 509  --------TPSLTVF--------LQGTAAKDAEKAKDVLCKLEHTTLRKVTANTAIYYDP 552

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DP+NT+I EDQE+VN++YEMPDFDP+R SPWLLRIELDR+RMTDKKLTMEAI++KI+ GF
Sbjct: 553  DPKNTIIEEDQEWVNIFYEMPDFDPSRCSPWLLRIELDRRRMTDKKLTMEAIADKIHQGF 612

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLN I+ DDNAEKLV R+RI N +  K  +E++ V++MEDD+FLRCIE NMLSD+TLQ
Sbjct: 613  GDDLNVIYTDDNAEKLVFRLRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQ 671

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIEAI KVYMH P TD KKR++IT  G FKAI +WLLETDGT+L KVLSE++VDP+RT S
Sbjct: 672  GIEAITKVYMHKPTTDDKKRVVITPDGGFKAIPEWLLETDGTALAKVLSEQNVDPIRTTS 731

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIF+VLGIEAVRK++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 732  NDICEIFEVLGIEAVRKAIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 791

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQ+ GALMRCSFEETVD+LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LDA+K
Sbjct: 792  NRQEVGALMRCSFEETVDILMEAAVHAEQDPVKGVSENIMLGQLARAGTGCFDLVLDADK 851

Query: 1405 CKDGIEI 1411
            CK  +EI
Sbjct: 852  CKLAMEI 858



 Score =  461 bits (1187), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/353 (65%), Positives = 267/353 (75%), Gaps = 47/353 (13%)

Query: 143 VVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSI 202
           V++EHG LL GI+C +++G S+G+LLH+  LELG EV   FY +IQTVVN WLL EG   
Sbjct: 1   VIIEHGELLSGIICSRTIGRSAGNLLHVVTLELGWEVAAHFYSHIQTVVNAWLLAEG--- 57

Query: 203 GIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLE 262
                                                      H+IGIGDTIAD  TY +
Sbjct: 58  -------------------------------------------HTIGIGDTIADQATYRD 74

Query: 263 IQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLT 322
           IQ  I+KAK DV+EVI+KAHN +LEPTPGNTLRQTFEN VNRILNDARD+TGGSA++SL+
Sbjct: 75  IQETIRKAKLDVVEVIEKAHNDELEPTPGNTLRQTFENMVNRILNDARDRTGGSAQRSLS 134

Query: 323 EYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRG 382
           EYNN KAMVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+G
Sbjct: 135 EYNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKG 194

Query: 383 FVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRN 442
           FVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YD TVRN
Sbjct: 195 FVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRN 254

Query: 443 SVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLRNV 495
           S+GQL+QLRYGEDGL G  VE+Q + ++  ++  FE  ++ D S+E+ +LR +
Sbjct: 255 SLGQLVQLRYGEDGLDGMWVENQSMPSMKPTNALFEKDFKLDLSDEK-SLRKL 306



 Score =  229 bits (583), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 124/188 (65%), Positives = 149/188 (79%), Gaps = 9/188 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 734 ICEIFEVLGIEAVRKAIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 793

Query: 830 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
           Q+ GALMRCSFEETVD+LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LDA+KCK
Sbjct: 794 QEVGALMRCSFEETVDILMEAAVHAEQDPVKGVSENIMLGQLARAGTGCFDLVLDADKCK 853

Query: 890 DGIEIPLATGMMGGPAGMFFGS--AATPSSMSPQMTPW-AQSTPAYNALMSP--GAAMTP 944
             +EI    G++G   GM+FG+  +   S+MSP  TPW A +TPAY A  SP  G+ MTP
Sbjct: 854 LAMEIQTGGGLLGT-GGMYFGNSMSPASSAMSPAQTPWNAGTTPAYGAAWSPATGSGMTP 912

Query: 945 GGPGFSPS 952
           GG GFSPS
Sbjct: 913 GGAGFSPS 920



 Score =  186 bits (472), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+NT+I EDQE+VN++YEMPDFDP+R SPWLLRIELDR+RMTDKK
Sbjct: 539  LRKVTANTAIYYDPDPKNTIIEEDQEWVNIFYEMPDFDPSRCSPWLLRIELDRRRMTDKK 598

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTMEAI++KI+ GFG                            DDLN I+ DDNAEKLV 
Sbjct: 599  LTMEAIADKIHQGFG----------------------------DDLNVIYTDDNAEKLVF 630

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N +  K  +E++ V++MEDD+FLRCIE
Sbjct: 631  RLRITNQEGDK-GNEDEQVERMEDDVFLRCIE 661



 Score =  166 bits (420), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 90/113 (79%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAG
Sbjct: 144  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAG 203

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            LTPSEFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 204  LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSL 256



 Score =  143 bits (361), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 103/170 (60%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+GQL+QLRYGEDGL G  VE+Q + ++  ++  FE
Sbjct: 231 GYIQRRLIKAMESVMVNYDGTVRNSLGQLVQLRYGEDGLDGMWVENQSMPSMKPTNALFE 290

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             ++ D S+E+ LR+++ E+V+REL GS + + E+E                        
Sbjct: 291 KDFKLDLSDEKSLRKLYTENVVRELQGSAEALKEVE------------------------ 326

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 327 -----------AEWAQLEEDRRLLRKIFPKGDAKIVLPCNLQRMIWNAQK 365



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 70/77 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
           ++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETV
Sbjct: 749 AIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETV 808

Query: 576 DVLMDAAAHAEADPMRG 592
           D+LM+AA HAE DP++G
Sbjct: 809 DILMEAAVHAEQDPVKG 825


>gi|520513|gb|AAA50227.1| RNA polymerase II, largest subunit, partial [Helobdella stagnalis]
          Length = 1337

 Score =  584 bits (1506), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 283/418 (67%), Positives = 322/418 (77%), Gaps = 46/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++++MNILM+LP W GK+PQP ILKP+ LWTGKQ+FS+IIPG +N+ RTHSTHPDDED G
Sbjct: 464 KDEIMNILMYLPGWAGKLPQPAILKPRALWTGKQLFSIIIPGRINVIRTHSTHPDDEDRG 523

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           P++WISPGDTKV+VE G LL GILCKKSLG SSGSL HI   ELG +    FY  IQ V 
Sbjct: 524 PHKWISPGDTKVLVEDGKLLSGILCKKSLGASSGSLQHIIHHELGSDATADFYAYIQMVT 583

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N+WLL+ G                                              H+IGI 
Sbjct: 584 NHWLLVTG----------------------------------------------HTIGIA 597

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD +TY +IQ AIKKAK DV+EVI+KAHN +LEP PGNTLRQTFENQVNRILNDARD
Sbjct: 598 DTIADAKTYSDIQTAIKKAKSDVVEVIEKAHNDELEPMPGNTLRQTFENQVNRILNDARD 657

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG  A+KSL+E+NN K+MVVAGSKG+ INISQVIACVGQQNVEGKRIPFGFR+RTLPHF
Sbjct: 658 KTGSLAQKSLSEFNNFKSMVVAGSKGNKINISQVIACVGQQNVEGKRIPFGFRQRTLPHF 717

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 718 IKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 777

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV YD TVRN + QLIQLRYGEDGL GE VE Q + ++  S+K FE  ++FDP+NE+
Sbjct: 778 VMVKYDGTVRNQIEQLIQLRYGEDGLAGEWVEFQNLPSLKPSNKAFEAGFKFDPTNEK 835



 Score =  468 bits (1203), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/414 (60%), Positives = 298/414 (71%), Gaps = 18/414 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V GED+LSK AN NATLL   LVRSTLC+K V E + LS+EAFEWL+GEIE++F QA+V 
Sbjct: 930  VKGEDRLSKTANTNATLLMNILVRSTLCSKRVIEEFHLSTEAFEWLMGEIESKFIQARVQ 989

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
                   +  + +     + TL  F    Y   S    +N  L      E    +   R 
Sbjct: 990  PGEMVGALAAQSLGEPATQMTLNTF---HYAGVS---AKNVTLGVPRLKEIINVSKKPRA 1043

Query: 1073 G-----LIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVY 1121
                  LI    + AE   +VL       L +VT NTAIYYDPDP +T+I EDQE+V +Y
Sbjct: 1044 PSLTVILIGQPARDAEKAKDVLCQLEHTTLRKVTENTAIYYDPDPMHTLIEEDQEWVYIY 1103

Query: 1122 YEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLV 1181
            Y+MPD D +R+SPWLLR+ELDRKRMTDKKLTME ISEKI AGFGDDLNCIFNDDNAEKLV
Sbjct: 1104 YDMPDVDISRLSPWLLRVELDRKRMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAEKLV 1163

Query: 1182 LRIRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD 1240
            LR+R+M++ D K  QD E+ +DKM DD FL+ IE+NML+DMTLQGI +I KVYM  P TD
Sbjct: 1164 LRVRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGITSIAKVYMQQPTTD 1223

Query: 1241 SKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVR 1300
             KKRIII E GEFKA+ DW+LETDGT+L +VLS  +VDPV+T SNDI E+F+VLGIEAVR
Sbjct: 1224 DKKRIIIDEKGEFKALQDWILETDGTALRRVLSVENVDPVKTVSNDIVEVFEVLGIEAVR 1283

Query: 1301 KSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1354
            KS+E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+TG L R
Sbjct: 1284 KSIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQETGVLAR 1337



 Score =  180 bits (456), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 92/153 (60%), Positives = 107/153 (69%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT NTAIYYDPDP +T+I EDQE+V +YY+MPD D +R+SPWLLR+ELDRKRMTDKK
Sbjct: 1073 LRKVTENTAIYYDPDPMHTLIEEDQEWVYIYYDMPDVDISRLSPWLLRVELDRKRMTDKK 1132

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME ISEKI AGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 1133 LTMEQISEKITAGFG----------------------------DDLNCIFNDDNAEKLVL 1164

Query: 1649 RIRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIE 1680
            R+R+M++ D K  QD E+ +DKM DD FL+ IE
Sbjct: 1165 RVRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIE 1197



 Score =  170 bits (430), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 79/113 (69%), Positives = 90/113 (79%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   N+   +QVIACVGQQNVEGKRIPFGFR+RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 678  VAGSKGNKINISQVIACVGQQNVEGKRIPFGFRQRTLPHFIKDDYGPESRGFVENSYLAG 737

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            LTP+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N +
Sbjct: 738  LTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQI 790



 Score =  150 bits (380), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 104/170 (61%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD TVRN + QLIQLRYGEDGL GE VE Q + ++  S+K FE
Sbjct: 765 GYIQRRLIKAMESVMVKYDGTVRNQIEQLIQLRYGEDGLAGEWVEFQNLPSLKPSNKAFE 824

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             ++FDP+NE+ L+   +ED+L+ L G  +VI+E+E                        
Sbjct: 825 AGFKFDPTNEKHLKNYLDEDILKSLNGDANVIAEVE------------------------ 860

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       E+++L EDR A+R+IF SG+S +VLPCNL  +I+  Q+
Sbjct: 861 -----------SEYKQLLEDRTAIRQIFPSGDSKIVLPCNLQRLIWNAQK 899



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/63 (73%), Positives = 55/63 (87%)

Query: 775  KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
            +++ + +VRKS+E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+TG 
Sbjct: 1275 EVLGIEAVRKSIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQETGV 1334

Query: 835  LMR 837
            L R
Sbjct: 1335 LAR 1337



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/53 (81%), Positives = 47/53 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 568
            S+E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+TG L R
Sbjct: 1285 SIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQETGVLAR 1337



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 33/46 (71%)

Query: 1497 RQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            R IITPQ NRPVMGIVQD+LTAV KMT+RD F+ K      + Y P
Sbjct: 430  RMIITPQANRPVMGIVQDSLTAVNKMTRRDTFITKDEIMNILMYLP 475



 Score = 47.0 bits (110), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 41/50 (82%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           E   ILGMDPK+ARPDW++ T+LPVPPL VRPAVVM GSA+NQ+ + + L
Sbjct: 138 ETCTILGMDPKYARPDWLIATMLPVPPLPVRPAVVMFGSAKNQDDLTHKL 187


>gi|156405|gb|AAA28126.1| RNA polymerase II [Caenorhabditis elegans]
          Length = 1859

 Score =  584 bits (1505), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 279/408 (68%), Positives = 324/408 (79%), Gaps = 46/408 (11%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           MM++LM+LP WDGK+PQP ILKPKPLWTGKQVFSLIIPGNVN+ RTHSTHPD EDSGPY+
Sbjct: 550 MMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYK 609

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           WISPGDTKV++EHG LL GI+C K++G S+G+LLH+  LELG+E+   FY +IQTV+N W
Sbjct: 610 WISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAW 669

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           L+ EG                                              H+IGIGDTI
Sbjct: 670 LIREG----------------------------------------------HTIGIGDTI 683

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD  TYL+IQ  I+KAK+DV++VI+KAHN DLEPTPGNTLRQTFEN+VN+ILNDARD+TG
Sbjct: 684 ADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTG 743

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E+NN K+MVV+GSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHFIKD
Sbjct: 744 SSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKD 803

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV
Sbjct: 804 DYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 863

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYR 482
           +YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE  +R
Sbjct: 864 NYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFR 911



 Score =  567 bits (1460), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/514 (56%), Positives = 364/514 (70%), Gaps = 50/514 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+G D++SKQA  NATLL   L+RSTLCTK +    +L+SEAF+WL+GEIE+RFQQA   
Sbjct: 1023 VSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQ 1082

Query: 1010 --QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
              +++  +  Q++ G+                    P ++  +   + AG++        
Sbjct: 1083 PGEMVGALAAQSL-GE--------------------PATQMTLNTFHYAGVSAKNVTLGV 1121

Query: 1068 MGGREGLIDTAVKTAETVNVLVFLF--------------------QVTANTAIYYDPDPQ 1107
               +E  I    KT +T ++ VFL                      VT NTAIYYDPDP+
Sbjct: 1122 PRLKE--IINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTVTCNTAIYYDPDPK 1179

Query: 1108 NTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
            NTVI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKKLTME I+++I+ GFG+D
Sbjct: 1180 NTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGND 1239

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIE 1227
            ++ I+ DDNAEKLV R+RI   D  + Q+E+  VDKMEDD+FLRCIEANMLSD+TLQGI 
Sbjct: 1240 VHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIP 1297

Query: 1228 AIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDI 1287
            AI KVYM+ P TD KKRIIIT  G FK++ADW+LETDGT+L++VLSER +DPVRT SNDI
Sbjct: 1298 AISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDI 1357

Query: 1288 CEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 1347
            CEIF+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMA +RHGINRQ
Sbjct: 1358 CEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAYSRHGINRQ 1417

Query: 1348 DTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1407
            + GALMRCSFEETVD+LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK 
Sbjct: 1418 EVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKY 1477

Query: 1408 GIEIPLATGMMGGPAGMFFGSAATPSSIPGPPAW 1441
            G+EIP    M GG  G F GS +     P    W
Sbjct: 1478 GMEIPQNVVMGGGFYGSFAGSPSNREFSPAHSPW 1511



 Score =  223 bits (567), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 115/186 (61%), Positives = 137/186 (73%), Gaps = 8/186 (4%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMA +RHGINR
Sbjct: 1357 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAYSRHGINR 1416

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            Q+ GALMRCSFEETVD+LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK
Sbjct: 1417 QEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCK 1476

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAY-NALMSP-GAAMTPGG 946
             G+EIP    M GG  G F GS +     SP  +PW    TP Y  A  SP    M+PG 
Sbjct: 1477 YGMEIPQNVVMGGGFYGSFAGSPSN-REFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA 1535

Query: 947  PGFSPS 952
             GFSP+
Sbjct: 1536 -GFSPA 1540



 Score =  166 bits (420), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 103/149 (69%), Gaps = 30/149 (20%)

Query: 1532 VTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTM 1591
            VT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKKLTM
Sbjct: 1166 VTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTM 1225

Query: 1592 EAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIR 1651
            E I+++I+ GFG+D++T                            I+ DDNAEKLV R+R
Sbjct: 1226 EMIADRIHGGFGNDVHT----------------------------IYTDDNAEKLVFRLR 1257

Query: 1652 IMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            I   D  + Q+E+  VDKMEDD+FLRCIE
Sbjct: 1258 IAGEDKGEAQEEQ--VDKMEDDVFLRCIE 1284



 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/111 (70%), Positives = 89/111 (80%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLT
Sbjct: 763  GSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLT 822

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            PSEFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 823  PSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSL 873



 Score =  134 bits (336), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 104/170 (61%), Gaps = 25/170 (14%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 848 GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 907

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R                           +++   +++D    K LR+ ++EDV+RE+
Sbjct: 908 RDFRVS-------------------------VAQNAIKLMDLTDNKFLRKNYSEDVVREI 942

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
             S D IS +E EW +L EDR  LR+ F  G++ +VLPCNL+ +I+  Q+
Sbjct: 943 QESEDGISLVESEWSQLEEDRRLLRKDFPRGDAKIVLPCNLLRLIWNAQK 992



 Score =  133 bits (335), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 58/77 (75%), Positives = 69/77 (89%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMA +RHGINRQ+ GALMRCSFEETV
Sbjct: 1372 AIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAYSRHGINRQEVGALMRCSFEETV 1431

Query: 576  DVLMDAAAHAEADPMRG 592
            D+LM+AA HAE DP++G
Sbjct: 1432 DILMEAAVHAEEDPVKG 1448



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           E+ +++GMDP+FARP+WM+ TVLPVPPL+VRPAVV  GSA+NQ+ + + L
Sbjct: 225 EDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKL 274



 Score = 68.9 bits (167), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 36/42 (85%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 1530
            +E I + PRQ+ITPQ N+PVMGIVQDTL AVR MTKRDVF+D
Sbjct: 505  IEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 546


>gi|341894670|gb|EGT50605.1| hypothetical protein CAEBREN_32550 [Caenorhabditis brenneri]
          Length = 1713

 Score =  583 bits (1504), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 283/434 (65%), Positives = 336/434 (77%), Gaps = 49/434 (11%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           MM++LM+LP WDGK+PQP ILKPKPLWTGKQVFSLIIPGNVN+ RTHSTHPD ED+GPY+
Sbjct: 554 MMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDAGPYK 613

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           WISPGDTKV++EHG LL GI+C K++G S+G+LLH+  LELGHE+   FY +IQTV+N W
Sbjct: 614 WISPGDTKVLIEHGELLTGIVCSKTVGKSAGNLLHVVALELGHEIAANFYSHIQTVINAW 673

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL EG                                              H+IGIGDTI
Sbjct: 674 LLREG----------------------------------------------HTIGIGDTI 687

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD +TY +IQ  I+KAK+DV+++I+KAHN DLEPTPGNTLRQTFEN+VN+ILNDARD+TG
Sbjct: 688 ADQETYRDIQDTIRKAKQDVVDIIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTG 747

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E+NN K+MVV+GSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHFIKD
Sbjct: 748 SSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKD 807

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV
Sbjct: 808 DYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 867

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT--- 491
           +YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE  +R    +E+ +   
Sbjct: 868 NYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRVSFGSEKFSAKL 927

Query: 492 LRNVSSLRRVVNSK 505
            RN S +  + ++K
Sbjct: 928 TRNWSKIMELTDTK 941



 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 294/499 (58%), Positives = 357/499 (71%), Gaps = 16/499 (3%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
            V+G D++SKQA  NATLL   L+RSTLCTK +  + +L++EAF+WL+GEIE RFQQA  Q
Sbjct: 1036 VSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQ 1095

Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-----VENSYLAGLTPSEFFF 1065
                VG    +    P         H+        + G      + N      TPS   F
Sbjct: 1096 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVF 1155

Query: 1066 ---HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
                A    E   D   K   T      L +VT NTAIYYDPDP+NTVI ED+E+V+++Y
Sbjct: 1156 LTGPAAKDPEKAKDVLCKLEHTT-----LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFY 1210

Query: 1123 EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1182
            EMPD D +R SPWLLRIELDRKRM DKKLTME I+++I+ GFG+D++ I+ DDNAEKLV 
Sbjct: 1211 EMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVF 1270

Query: 1183 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1242
            R+RI   +D   + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ PQTD K
Sbjct: 1271 RLRIA-GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPQTDDK 1329

Query: 1243 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1302
            KRIIIT  G FKA+ADW+LETDGT+L++VLSE+ +DPVRT SNDICEIF+VLGIEAVRK+
Sbjct: 1330 KRIIITPEGGFKAVADWILETDGTALLRVLSEQQIDPVRTTSNDICEIFEVLGIEAVRKA 1389

Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1362
            +E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD
Sbjct: 1390 IEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVD 1449

Query: 1363 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPA 1422
            +LM+A+ HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK G+EIP    M  G  
Sbjct: 1450 ILMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKHGMEIPQNVVMGAGFY 1509

Query: 1423 GMFFGSAATPSSIPGPPAW 1441
            G F GS +     P    W
Sbjct: 1510 GNFAGSPSNREYSPSHSPW 1528



 Score =  228 bits (582), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 115/185 (62%), Positives = 138/185 (74%), Gaps = 7/185 (3%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1374 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 1433

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            Q+ GALMRCSFEETVD+LM+A+ HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK
Sbjct: 1434 QEVGALMRCSFEETVDILMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCK 1493

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYN-ALMSPGAAMTPGGP 947
             G+EIP    M  G  G F GS +     SP  +PW    TP+YN A  SP   M+P   
Sbjct: 1494 HGMEIPQNVVMGAGFYGNFAGSPSN-REYSPSHSPWNSGVTPSYNGAAWSPAGNMSPSA- 1551

Query: 948  GFSPS 952
            GFSP+
Sbjct: 1552 GFSPA 1556



 Score =  167 bits (424), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 84/152 (55%), Positives = 105/152 (69%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKK
Sbjct: 1179 LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKK 1238

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+ GFG+D++T                            I+ DDNAEKLV 
Sbjct: 1239 LTMEMIADRIHGGFGNDVHT----------------------------IYTDDNAEKLVF 1270

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   +D   + +E+ VDKMEDD+FLRCIE
Sbjct: 1271 RLRIA-GEDKGAEGQEEQVDKMEDDVFLRCIE 1301



 Score =  165 bits (417), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/111 (70%), Positives = 89/111 (80%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLT
Sbjct: 767  GSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLT 826

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            PSEFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 827  PSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSL 877



 Score =  137 bits (344), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 108/170 (63%), Gaps = 16/170 (9%)

Query: 592  GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
            GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 852  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 911

Query: 652  DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
              +R    +E+     F+  + R              ++++    K LR+ ++EDV+RE+
Sbjct: 912  RDFRVSFGSEK-----FSAKLTRNW-----------SKIMELTDTKFLRKHYSEDVVREI 955

Query: 712  MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
              S D IS +E EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 956  QESLDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQK 1005



 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/77 (76%), Positives = 70/77 (90%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETV
Sbjct: 1389 AIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETV 1448

Query: 576  DVLMDAAAHAEADPMRG 592
            D+LM+A+ HAE DP++G
Sbjct: 1449 DILMEASVHAEVDPVKG 1465



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           E+ +++GMDP+FARP+WM+ TVLPVPPL+VRPAVV  GSA+NQ+ + + L
Sbjct: 225 EDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKL 274



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 36/42 (85%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 1530
            +E I + PRQ+ITPQ N+PVMGIVQDTL AVR MTKRD+F+D
Sbjct: 509  IEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDIFID 550


>gi|340368153|ref|XP_003382617.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Amphimedon queenslandica]
          Length = 1933

 Score =  583 bits (1504), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 310/521 (59%), Positives = 367/521 (70%), Gaps = 56/521 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV- 1011
            V G+D LS+QA  NATLLF   +RSTLCTK +AE ++L+ EAFEWL+GEIE RFQ+A V 
Sbjct: 1017 VKGDDALSRQAQINATLLFSIFLRSTLCTKRMAEEHKLTEEAFEWLLGEIETRFQRAHVQ 1076

Query: 1012 ----IACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
                +  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINVSKKPK----- 1129

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                    TPS   F        L+  A + AE   +VL       L +VTANT+I+YDP
Sbjct: 1130 --------TPSLTIF--------LLGQAARDAEKCKDVLCRIEHTTLSKVTANTSIFYDP 1173

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQNTVI EDQEFVNVYYEMPDFDP  ISPWLLR+ELDRKRMTDKKLTME I+EKI++ F
Sbjct: 1174 DPQNTVIAEDQEFVNVYYEMPDFDPALISPWLLRLELDRKRMTDKKLTMEQIAEKISSTF 1233

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMT 1222
            GDDL C+FNDDNAEKLVLRIR+MNSDD K Q E  E+ +DKMED+ FLRC+EAN+LSDMT
Sbjct: 1234 GDDLRCLFNDDNAEKLVLRIRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMT 1293

Query: 1223 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1282
            LQGIE I KVYMH P  DSKKRI+I+E GEFKAI +W+LETDG +L++VLSE  VDPVRT
Sbjct: 1294 LQGIEQISKVYMHYPTQDSKKRIVISEQGEFKAIQEWILETDGVNLLRVLSEPSVDPVRT 1353

Query: 1283 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1342
             SN I EIFQVLGIEAVRK++EKE+N V+ F G YVNYRHLALLCD+MT +GHLMA+TRH
Sbjct: 1354 TSNHIVEIFQVLGIEAVRKALEKEINHVISFDGSYVNYRHLALLCDIMTCRGHLMAVTRH 1413

Query: 1343 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDA 1402
            G+NRQ+ GALMRCSFEETVD+LM+AA HAE D M+GVSE I++GQLP+ GTG F+L+LDA
Sbjct: 1414 GVNRQEVGALMRCSFEETVDILMEAAGHAEVDKMQGVSECIMLGQLPKGGTGAFELMLDA 1473

Query: 1403 EKCKDGIEIP-LATGMMGGPAGMF-FGSAATPSSIPGPPAW 1441
            EKCK  +EI    TGMM  P  MF  GS    S  P    W
Sbjct: 1474 EKCKSAMEISGTMTGMM-IPGLMFERGSGPVGSQTPAMTPW 1513



 Score =  571 bits (1472), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 279/419 (66%), Positives = 321/419 (76%), Gaps = 47/419 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPG-NVNMTRTHSTHPDDEDS 130
           +E MMN+LM+LP WDGKMP P ILKPKPLWTGKQ+FSLIIPG NVN+ RTHSTHPDDED+
Sbjct: 550 KESMMNLLMWLPSWDGKMPVPAILKPKPLWTGKQLFSLIIPGTNVNVIRTHSTHPDDEDN 609

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG LL GIL K +LG   GSL+H+  +ELG ++   FYGNIQTV
Sbjct: 610 GPYKWISPGDTKVLVEHGQLLSGILSKDTLGNKGGSLMHVVAMELGPDIARNFYGNIQTV 669

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNN+L+LEG                                              HSIGI
Sbjct: 670 VNNFLMLEG----------------------------------------------HSIGI 683

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIAD  TY +IQ  I+ AK DV+EVI+KAHN +LEPTPGNTLRQTFENQVNRILN+AR
Sbjct: 684 GDTIADNLTYNDIQKTIRSAKNDVVEVIKKAHNNELEPTPGNTLRQTFENQVNRILNEAR 743

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTG SA++SL+E+NN K MV AGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPH
Sbjct: 744 DKTGSSAQRSLSEFNNFKIMVTAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPH 803

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME
Sbjct: 804 FIKDDYGPESKGFVENSYLAGLTPNEFFFHAMGGREGLIDTAVKTSETGYIQRRLMKAME 863

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
            +M HYD T+RNS  Q+IQL YGEDG+ G  +E Q++ T+  S   F+ K+ FD +N+R
Sbjct: 864 GLMAHYDGTIRNSNSQMIQLCYGEDGMDGMWMEFQQLPTIKPSDAAFKRKFYFDVTNQR 922



 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/313 (42%), Positives = 188/313 (60%), Gaps = 24/313 (7%)

Query: 664  LRRIFNED-----VLR-ELMGSGD--VISELEKEMVDHFSWKQLRRIFNEDVLRELMGSG 715
            LR +FN+D     VLR  LM S D    SE ++E +D    +   R    ++L ++   G
Sbjct: 1237 LRCLFNDDNAEKLVLRIRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQG 1296

Query: 716  DVISELEKEWEKLCEDREALREIFS-SGESNVV----LPCNLMEVIFILQRWKL----WG 766
              I ++ K +          R + S  GE   +    L  + + ++ +L    +      
Sbjct: 1297 --IEQISKVYMHYPTQDSKKRIVISEQGEFKAIQEWILETDGVNLLRVLSEPSVDPVRTT 1354

Query: 767  NENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHG 826
            + ++  + +++ + +VRK++EKE+N V+ F G YVNYRHLALLCD+MT +GHLMA+TRHG
Sbjct: 1355 SNHIVEIFQVLGIEAVRKALEKEINHVISFDGSYVNYRHLALLCDIMTCRGHLMAVTRHG 1414

Query: 827  INRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 886
            +NRQ+ GALMRCSFEETVD+LM+AA HAE D M+GVSE I++GQLP+ GTG F+L+LDAE
Sbjct: 1415 VNRQEVGALMRCSFEETVDILMEAAGHAEVDKMQGVSECIMLGQLPKGGTGAFELMLDAE 1474

Query: 887  KCKDGIEIP-LATGMMGGPAGMFFGSAATPSSMSPQMTPW-AQSTPAYNALMSPGAAMTP 944
            KCK  +EI    TGMM  P  MF   +    S +P MTPW   +TP+Y    +PG  MTP
Sbjct: 1475 KCKSAMEISGTMTGMM-IPGLMFERGSGPVGSQTPAMTPWQGGATPSYMDAWTPG-GMTP 1532

Query: 945  G-GPGFSPSVAGE 956
            G    FSP+   E
Sbjct: 1533 GMSAAFSPAAQSE 1545



 Score =  199 bits (506), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 100/154 (64%), Positives = 112/154 (72%), Gaps = 30/154 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANT+I+YDPDPQNTVI EDQEFVNVYYEMPDFDP  ISPWLLR+ELDRKRMTDKK
Sbjct: 1160 LSKVTANTSIFYDPDPQNTVIAEDQEFVNVYYEMPDFDPALISPWLLRLELDRKRMTDKK 1219

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKI++ F                            GDDL C+FNDDNAEKLVL
Sbjct: 1220 LTMEQIAEKISSTF----------------------------GDDLRCLFNDDNAEKLVL 1251

Query: 1649 RIRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIE 1680
            RIR+MNSDD K Q E  E+ +DKMED+ FLRC+E
Sbjct: 1252 RIRLMNSDDQKYQSEADEEQLDKMEDETFLRCLE 1285



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 87/111 (78%)

Query: 999  VGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 1058
             G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGL
Sbjct: 766  AGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGL 825

Query: 1059 TPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            TP+EFFFHAMGGREGLIDTAVKT+ET  +   L +       +YD   +N+
Sbjct: 826  TPNEFFFHAMGGREGLIDTAVKTSETGYIQRRLMKAMEGLMAHYDGTIRNS 876



 Score =  130 bits (328), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 68/77 (88%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++EKE+N V+ F G YVNYRHLALLCD+MT +GHLMA+TRHG+NRQ+ GALMRCSFEETV
Sbjct: 1373 ALEKEINHVISFDGSYVNYRHLALLCDIMTCRGHLMAVTRHGVNRQEVGALMRCSFEETV 1432

Query: 576  DVLMDAAAHAEADPMRG 592
            D+LM+AA HAE D M+G
Sbjct: 1433 DILMEAAGHAEVDKMQG 1449



 Score =  128 bits (322), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 99/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +M HYD T+RNS  Q+IQL YGEDG+ G  +E Q++ T+  S   F+
Sbjct: 852 GYIQRRLMKAMEGLMAHYDGTIRNSNSQMIQLCYGEDGMDGMWMEFQQLPTIKPSDAAFK 911

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+ FD +N+RQLR+ F ++++R+LM SG     L+K                       
Sbjct: 912 RKFYFDVTNQRQLRQFFRDELIRDLMKSG----TLQK----------------------- 944

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                   ELE E+++L EDR ALR IF +G S V LP N+  +I+  Q+
Sbjct: 945 --------ELEDEFQQLKEDRAALRSIFPTGNSKVALPVNITRLIWNAQK 986



 Score = 60.8 bits (146), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ + +  R I+TPQ+NRPVMGIVQD+LTA  K TKRDVFL+K
Sbjct: 508  IQELMMVHRNILTPQSNRPVMGIVQDSLTAATKFTKRDVFLEK 550



 Score = 41.2 bits (95), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 40/46 (86%)

Query: 34  ILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           I+G+DP ++RPD M++TVLPVPPL VRPAVVMHGSARNQ+ + + L
Sbjct: 228 IIGIDPNYSRPDSMIITVLPVPPLPVRPAVVMHGSARNQDDLTHKL 273


>gi|326899907|gb|AAF26627.3|AF138977_1 RNA polymerase II largest subunit [Eurytemora affinis]
          Length = 445

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 298/459 (64%), Positives = 340/459 (74%), Gaps = 56/459 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++E MM +LMFLP WDGK+P P ILKPKPLWTGKQVFSLIIPGNVN  R HS HPD E+ 
Sbjct: 16  DKELMMXLLMFLPXWDGKJPIPAILKPKPLWTGKQVFSLIIPGNVNCXRLHSXHPDSENG 75

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY WISPGDT+V++E+G  + GI CKK+LG  SGSL+H C LE+GH   G FYGNIQTV
Sbjct: 76  GPYHWISPGDTRVLIENGEXITGIXCKKTLGXXSGSLMHXCQLEVGHRDNGXFYGNIQTV 135

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           +NNWLL+EG                                              HSIGI
Sbjct: 136 INNWLLIEG----------------------------------------------HSIGI 149

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIAD QTY +I   I+ +K +V EVI KAH  +LE TPGNTLRQTFEN VNRI NDAR
Sbjct: 150 GDTIADAQTYXDILXTIEXSKAEVNEVIHKAHFDELEXTPGNTLRQTFENXVNRIXNDAR 209

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAK+SLTE+NN K MVVAGSKGS+IN+SQVIACVGQQNVEGKRIPFGFRK TLPH
Sbjct: 210 DKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKXTLPH 269

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKD YGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 270 FIKDXYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 329

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           + MV+YD TVRNSVGQLIQLRYGEDGL GEAVE Q I TV LS+  FE K++FDP+NER 
Sbjct: 330 ACMVNYDGTVRNSVGQLIQLRYGEDGLAGEAVEFQSIKTVTLSNNAFESKFKFDPTNER- 388

Query: 491 TLRNVSSLRRVVNSKPL--LIGCWKLTS-VEKEMNTVLQ 526
                  +RRV   + L  ++G  ++ + +E+E   +L+
Sbjct: 389 ------YVRRVFTDEVLRDMVGSGEVVAEIEREWEQLLR 421



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/161 (52%), Positives = 106/161 (65%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAME+ MV+YD TVRNSVGQLIQLRYGEDGL GEAVE Q I TV LS+  FE
Sbjct: 318 GYIQRRLIKAMEACMVNYDGTVRNSVGQLIQLRYGEDGLAGEAVEFQSIKTVTLSNNAFE 377

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FDP+NER +RR+F ++VLR+++GSG+V++E+E+                       
Sbjct: 378 SKFKFDPTNERYVRRVFTDEVLRDMVGSGEVVAEIER----------------------- 414

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                       EWE+L  DR  LR+IF  G + VVLPCNL
Sbjct: 415 ------------EWEQLLRDRHCLRQIFPKGNNKVVLPCNL 443



 Score =  160 bits (406), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 84/102 (82%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRK TLPHFIKD YGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKXTLPHFIKDXYGPESRGFVENSYLAGLTPSEFYFHAM 301

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +      + YD   +N+V
Sbjct: 302  GGREGLIDTAVKTAETGYIQRRLIKAMEACMVNYDGTVRNSV 343


>gi|308468219|ref|XP_003096353.1| CRE-AMA-1 protein [Caenorhabditis remanei]
 gi|308243268|gb|EFO87220.1| CRE-AMA-1 protein [Caenorhabditis remanei]
          Length = 1853

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 281/422 (66%), Positives = 329/422 (77%), Gaps = 46/422 (10%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           MM++LM+LP WDGK+PQP ILKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPD EDSGPY+
Sbjct: 554 MMDLLMYLPTWDGKVPQPAILKPKPLWTGKQLFSLIIPGNVNVLRTHSTHPDSEDSGPYK 613

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           WISPGDTKV++EHG LL GI+C K++G S+G+LLH+  LELG+E+   FY +IQTV+N W
Sbjct: 614 WISPGDTKVLIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAW 673

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G                                              H+IGIGDTI
Sbjct: 674 LLRVG----------------------------------------------HTIGIGDTI 687

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD  TYL+IQ  IKKAK+DV+++I+KAHN DLEPTPGNTLRQTFEN+VN+ILNDARD+TG
Sbjct: 688 ADHATYLDIQNTIKKAKQDVVDIIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTG 747

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E+NN K+MVV+GSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHFIKD
Sbjct: 748 SSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKD 807

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV
Sbjct: 808 DYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 867

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLRN 494
           +YD TVRNS+ Q++QLRYGEDGL G  VE Q + T+  ++  FE  +R D ++ +   +N
Sbjct: 868 NYDGTVRNSLAQMVQLRYGEDGLDGMWVEDQNMPTMKPNNAVFERDFRMDLTDNKFLRKN 927

Query: 495 VS 496
            S
Sbjct: 928 YS 929



 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 279/488 (57%), Positives = 355/488 (72%), Gaps = 52/488 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+G D++SKQA  NATLL   L+RSTLCTK +  + +L++EAF+WL+GE+E+RFQQA   
Sbjct: 1017 VSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEVESRFQQAIAQ 1076

Query: 1010 --QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
              +++  +  Q++ G+                    P ++  +   + AG++        
Sbjct: 1077 PGEMVGALAAQSL-GE--------------------PATQMTLNTFHYAGVSAKNVTLGV 1115

Query: 1068 MGGREGLIDTAVKTAETVNVLVFLF-----------------------QVTANTAIYYDP 1104
               +E  I    K  +T ++ VFL                        +VT NTAIYYDP
Sbjct: 1116 PRLKE--IINVSKQLKTPSLTVFLTGAAAKDAEKAKDVLCKLEHTTLKKVTLNTAIYYDP 1173

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DP+NTVI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKKLTME I+++I+ GF
Sbjct: 1174 DPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGF 1233

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            G+D++ I+ DDNAEKLV R+RI   +D     +E+ VDKMEDD+FLRCIEANMLSD+TLQ
Sbjct: 1234 GNDVHTIYTDDNAEKLVFRLRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQ 1292

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GI AI KVYM+ P TD KKRIIIT  G FKA+ADW+LETDGT+L++VL+ER +DPVRT S
Sbjct: 1293 GIPAISKVYMNQPNTDDKKRIIITPEGGFKAVADWILETDGTALLRVLAERQIDPVRTTS 1352

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIF+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 1353 NDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 1412

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NRQ+ GALMRCSFEETVD+LM+A+ HAE DP++GVSENI++GQL R GTGCFDL+LD EK
Sbjct: 1413 NRQEVGALMRCSFEETVDILMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDLVLDVEK 1472

Query: 1405 CKDGIEIP 1412
            CK G+EIP
Sbjct: 1473 CKYGMEIP 1480



 Score =  215 bits (548), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/186 (59%), Positives = 134/186 (72%), Gaps = 10/186 (5%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1355 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 1414

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            Q+ GALMRCSFEETVD+LM+A+ HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK
Sbjct: 1415 QEVGALMRCSFEETVDILMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCK 1474

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNALMSPGAAMTPGGPG 948
             G+EIP    +MG      F  +      SP  +PW    TP+Y      GA+ +PG  G
Sbjct: 1475 YGMEIPQNV-VMGAGYYGGFAGSPNAHEFSPSHSPWNSGVTPSYG-----GASWSPGAGG 1528

Query: 949  FSPSVA 954
             SPS  
Sbjct: 1529 MSPSAG 1534



 Score =  166 bits (419), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/152 (55%), Positives = 104/152 (68%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKK
Sbjct: 1160 LKKVTLNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKK 1219

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+ GFG+D++T                            I+ DDNAEKLV 
Sbjct: 1220 LTMEMIADRIHGGFGNDVHT----------------------------IYTDDNAEKLVF 1251

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   +D     +E+ VDKMEDD+FLRCIE
Sbjct: 1252 RLRIAG-EDKGADTQEEQVDKMEDDVFLRCIE 1282



 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/111 (70%), Positives = 89/111 (80%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLT
Sbjct: 767  GSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLT 826

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            PSEFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 827  PSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSL 877



 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/77 (76%), Positives = 70/77 (90%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETV
Sbjct: 1370 AIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETV 1429

Query: 576  DVLMDAAAHAEADPMRG 592
            D+LM+A+ HAE DP++G
Sbjct: 1430 DILMEASVHAEVDPVKG 1446



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 99/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE Q + T+  ++  FE
Sbjct: 852 GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVEDQNMPTMKPNNAVFE 911

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++ + LR+ ++EDV+RE+  S D IS +E                        
Sbjct: 912 RDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVE------------------------ 947

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 948 -----------SEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQK 986



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           E+ +++GMDP+FARP+WM+ TVLPVPPL+VRPAVV  GSA+NQ+ + + L
Sbjct: 225 EDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKL 274



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 36/42 (85%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 1530
            +E I + PRQ+ITPQ N+PVMGIVQDTL AVR MTKRDVF+D
Sbjct: 509  IEEICMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550


>gi|194375696|dbj|BAG57192.1| unnamed protein product [Homo sapiens]
          Length = 855

 Score =  578 bits (1489), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 268/344 (77%), Positives = 307/344 (89%), Gaps = 2/344 (0%)

Query: 1091 LFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1150
            L +VTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 65   LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 124

Query: 1151 LTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFL 1210
            LTME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FL
Sbjct: 125  LTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFL 184

Query: 1211 RCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMK 1270
            RCIE+NML+DMTLQGIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+
Sbjct: 185  RCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMR 244

Query: 1271 VLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVM 1330
            VLSE+DVDPVRT SNDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD M
Sbjct: 245  VLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTM 304

Query: 1331 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 1390
            T +GHLMAITRHG+NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL  
Sbjct: 305  TCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAP 364

Query: 1391 MGTGCFDLLLDAEKCKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
             GTGCFDLLLDAEKCK G+EIP     +G  GP GMFFGSA +P
Sbjct: 365  AGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 408



 Score =  252 bits (644), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)

Query: 664 LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
           L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 199

Query: 718 ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
           I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 200 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 259

Query: 769 NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
           ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 260 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 319

Query: 829 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
           RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 320 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 379

Query: 889 KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
           K G+EIP     +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MT
Sbjct: 380 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 439

Query: 944 PGGPGFSPSVAGE 956
           PG  GFSPS A +
Sbjct: 440 PGAAGFSPSAASD 452



 Score =  214 bits (544), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 65   LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 124

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 125  LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 156

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 157  RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 188



 Score =  134 bits (337), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
           ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 276 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 335

Query: 576 DVLMDAAAHAEADPMRG 592
           DVLM+AAAH E+DPM+G
Sbjct: 336 DVLMEAAAHGESDPMKG 352


>gi|149053073|gb|EDM04890.1| rCG34223 [Rattus norvegicus]
          Length = 568

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 268/344 (77%), Positives = 307/344 (89%), Gaps = 2/344 (0%)

Query: 1091 LFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1150
            L +VTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 65   LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 124

Query: 1151 LTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFL 1210
            LTME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FL
Sbjct: 125  LTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFL 184

Query: 1211 RCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMK 1270
            RCIE+NML+DMTLQGIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+
Sbjct: 185  RCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMR 244

Query: 1271 VLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVM 1330
            VLSE+DVDPVRT SNDI EIF VLGIEAVRK++E+E+  V+ F G YVNYRHLALLCD M
Sbjct: 245  VLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTM 304

Query: 1331 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 1390
            T +GHLMAITRHG+NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL  
Sbjct: 305  TCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAP 364

Query: 1391 MGTGCFDLLLDAEKCKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
             GTGCFDLLLDAEKCK G+EIP     +G  GP GMFFGSA +P
Sbjct: 365  AGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 408



 Score =  249 bits (637), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)

Query: 664 LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
           L  IFN+D     VLR  +M S +   + E+E+VD        R    ++L ++   G  
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 199

Query: 718 ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
           I ++ K +  L + D +    I   GE       +L  + + ++ +L    +      + 
Sbjct: 200 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 259

Query: 769 NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
           ++  +  ++ + +VRK++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 260 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 319

Query: 829 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
           RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL   GTGCFDLLLDAEKC
Sbjct: 320 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 379

Query: 889 KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
           K G+EIP     +G  GP GMFFGSA +P   +SP MTPW Q +TPAY A   S G+ MT
Sbjct: 380 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 439

Query: 944 PGGPGFSPSVAGE 956
           PG  GFSPS A +
Sbjct: 440 PGAAGFSPSAASD 452



 Score =  211 bits (537), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD  RISPWLLR+ELDRK MTD+K
Sbjct: 65   LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 124

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKINAGFG                            DDLNCIFNDDNAEKLVL
Sbjct: 125  LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 156

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 157  RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 188



 Score =  131 bits (329), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
           ++E+E+  V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 276 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 335

Query: 576 DVLMDAAAHAEADPMRG 592
           DVLM+AAAH E+DPM+G
Sbjct: 336 DVLMEAAAHGESDPMKG 352


>gi|194245566|gb|ACF35393.1| RNA polymerase II large subunit [Bembidion integrum]
          Length = 473

 Score =  567 bits (1460), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 283/361 (78%), Positives = 296/361 (81%), Gaps = 53/361 (14%)

Query: 143 VVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSI 202
           V+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEVCGRFYGNIQTV+NNWLLLEG   
Sbjct: 1   VMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGRFYGNIQTVINNWLLLEG--- 57

Query: 203 GIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLE 262
                                                      HSIGIGDTIADPQTY+E
Sbjct: 58  -------------------------------------------HSIGIGDTIADPQTYVE 74

Query: 263 IQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLT 322
           IQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLT
Sbjct: 75  IQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLT 134

Query: 323 EYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRG 382
           EYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRG
Sbjct: 135 EYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRG 194

Query: 383 FVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRN 442
           FVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYD TVRN
Sbjct: 195 FVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRN 254

Query: 443 SVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLRNVSSLRRVV 502
           SVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE K+RFDPSNER        LRR+ 
Sbjct: 255 SVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFEKKFRFDPSNER-------YLRRIF 307

Query: 503 N 503
           N
Sbjct: 308 N 308



 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/170 (62%), Positives = 120/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 231 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFE 290

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDPSNER LRRIFNED++++LMGSGDVISELE+E      W+QL R          
Sbjct: 291 KKFRFDPSNERYLRRIFNEDIIKQLMGSGDVISELERE------WEQLSR---------- 334

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 335 -------------------DREALRQIFPSGESKVVLPCNLQRMIWNVQK 365



 Score =  171 bits (433), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 155  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 214

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 215  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 256



 Score =  107 bits (268), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/58 (84%), Positives = 55/58 (94%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ 1010
            VAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ
Sbjct: 396  VAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQ 453


>gi|262303425|gb|ACY44305.1| RNA polymerase largest subunit [Achelia echinata]
          Length = 654

 Score =  563 bits (1451), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 277/418 (66%), Positives = 311/418 (74%), Gaps = 69/418 (16%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMM +LMFLP WDG+MPQP ILKPKPLWTGKQ+FSLIIPG VN  RTHSTHPDDED G
Sbjct: 17  RDQMMTLLMFLPTWDGRMPQPSILKPKPLWTGKQLFSLIIPGTVNCIRTHSTHPDDEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++EHG L+ GI+CK+++G+S GSL+HI  LELGHEV G+FYG+IQTVV
Sbjct: 77  PYKWISPGDTKVLIEHGDLISGIICKRTVGSSGGSLMHIVMLELGHEVAGQFYGHIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG                                              HSIGIG
Sbjct: 137 NNWLLLEG----------------------------------------------HSIGIG 150

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD QTY +I+  I+ AK DVIEVI+KAHN +LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 151 DTIADHQTYQDIRNTIRNAKNDVIEVIEKAHNDELEPTPGNTLRQTFENKVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+E+NN KAMVV+GSKGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGSSAQKSLSEFNNFKAMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPESRGFVENSYL+GLTP+EFF                        RRLIKAMES
Sbjct: 271 IKDDYGPESRGFVENSYLSGLTPAEFF-----------------------XRRLIKAMES 307

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           VMV YD T+RNSV QLIQLRYGEDGL G  VE Q + T+  S K F+ K+RFDPSNER
Sbjct: 308 VMVTYDGTIRNSVQQLIQLRYGEDGLDGTMVESQNLPTIKPSDKAFQKKFRFDPSNER 365



 Score =  247 bits (631), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 139/227 (61%), Positives = 155/227 (68%), Gaps = 32/227 (14%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V GED+LS QANENATLLFQ L+RSTLCTK VAE +RLS+EAF+WL+GEI+ RFQQAQV+
Sbjct: 454  VPGEDRLSLQANENATLLFQALLRSTLCTKKVAEEFRLSTEAFDWLLGEIDTRFQQAQVM 513

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
               G   V  K +  G  +  L   I     P+             TPS   F       
Sbjct: 514  PXAG---VSAKNVTLGVPR--LKEIINVSKKPK-------------TPSLTVF------- 548

Query: 1073 GLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD 1126
             L   A + AE   +VL       L +VTANTAIYYDPDPQ+TVI EDQEFVNVYYEMPD
Sbjct: 549  -LTGAAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQDTVISEDQEFVNVYYEMPD 607

Query: 1127 FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFN 1173
            FD TRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFN
Sbjct: 608  FDTTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFN 654



 Score =  155 bits (393), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/79 (92%), Positives = 75/79 (94%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ+TVI EDQEFVNVYYEMPDFD TRISPWLLRIELDRKRMTDKK
Sbjct: 572  LRKVTANTAIYYDPDPQDTVISEDQEFVNVYYEMPDFDTTRISPWLLRIELDRKRMTDKK 631

Query: 1589 LTMEAISEKINAGFGDDLN 1607
            LTME I+EKINAGFGDDLN
Sbjct: 632  LTMEQIAEKINAGFGDDLN 650



 Score =  155 bits (391), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 102/169 (60%), Gaps = 35/169 (20%)

Query: 593 YIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED 652
           +  RRLIKAMESVMV YD T+RNSV QLIQLRYGEDGL G  VE Q + T+  S K F+ 
Sbjct: 296 FFXRRLIKAMESVMVTYDGTIRNSVQQLIQLRYGEDGLDGTMVESQNLPTIKPSDKAFQK 355

Query: 653 KYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELM 712
           K+RFDPSNER LRRIF EDV++EL  SG  + ELEKE      W++L+R           
Sbjct: 356 KFRFDPSNERYLRRIFTEDVVKELSSSGTALGELEKE------WERLKR----------- 398

Query: 713 GSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                             DRE LR +F +G++ VVLPCNL   IF + +
Sbjct: 399 ------------------DREVLRSVFPTGDNKVVLPCNLSRXIFHINK 429



 Score =  122 bits (306), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/65 (83%), Positives = 59/65 (90%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL+GLT
Sbjct: 233  GSKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLSGLT 292

Query: 1060 PSEFF 1064
            P+EFF
Sbjct: 293  PAEFF 297


>gi|358337430|dbj|GAA28785.2| DNA-directed RNA polymerase II subunit RPB1 [Clonorchis sinensis]
          Length = 1877

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 274/423 (64%), Positives = 311/423 (73%), Gaps = 46/423 (10%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           N+ +MMN+LM+LP W+G+MP+P I KP+ LWTGKQ+F+LIIPG VN  RTHSTHP+DED 
Sbjct: 516 NRAEMMNLLMYLPTWNGRMPKPAIYKPQRLWTGKQLFTLIIPGRVNCIRTHSTHPEDEDG 575

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+V+ G L+ GILCKK+LG+ SGSL+HI  LE  HE    F+ NIQTV
Sbjct: 576 GPYRWISPGDTKVIVDDGDLIAGILCKKTLGSGSGSLIHIVALEHHHEQVSMFFNNIQTV 635

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNNWLL+EG                                              H+IGI
Sbjct: 636 VNNWLLIEG----------------------------------------------HTIGI 649

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
            DT+ D  T  +I   I KAK+ V E+I +AHN DL+PTPGNTLRQTFEN VN+ILNDAR
Sbjct: 650 ADTLYDQATRRQIGETITKAKDAVFEIIDQAHNYDLQPTPGNTLRQTFENSVNKILNDAR 709

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTG  A++SL++YNN   MVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPH
Sbjct: 710 DKTGSCAQRSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQNVEGKRIPFGFRHRTLPH 769

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FI+DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 770 FIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 829

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMV YD TVRN + QLIQLRYGEDGL    VE QR+ T   SH  FE  +RFD  NER 
Sbjct: 830 SVMVKYDGTVRNQINQLIQLRYGEDGLDATHVEFQRLPTFKPSHAAFEHGFRFDIGNERA 889

Query: 491 TLR 493
             R
Sbjct: 890 LRR 892



 Score =  504 bits (1298), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 275/513 (53%), Positives = 336/513 (65%), Gaps = 60/513 (11%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV- 1011
            V G+D+LS++AN NATLL   L+RS+LC K V   YRLS EA +W++GEI  RFQQAQ+ 
Sbjct: 983  VPGDDRLSREANANATLLMGALIRSSLCAKKVINEYRLSYEALDWVLGEIRARFQQAQIH 1042

Query: 1012 ----IACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
                +  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1043 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINVSKKPK----- 1095

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTA------NTAIYYDP 1104
                    TPS   +        L   A + AE    +V   + T       +T IYYDP
Sbjct: 1096 --------TPSMTIY--------LTGPAARDAERTKDVVARLEHTTLRRLVNSTYIYYDP 1139

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DP+N+V+ ED+E+V+ YYE+PDFD   IS W+LRIE  RK MT KKL+ME IS+KI   F
Sbjct: 1140 DPKNSVVEEDREWVSTYYELPDFDVNAISSWMLRIEFARKGMTGKKLSMEQISDKITRAF 1199

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAV-DKMEDDMFLRCIEANMLSDMTL 1223
            G+DL C   DDN  KLV+RIRIMNSD  K   E D   DKMEDD FLR IEAN+LSD+TL
Sbjct: 1200 GNDLICHIPDDNL-KLVMRIRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITL 1258

Query: 1224 QGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTF 1283
            QGI  I KVYMH PQT  KKR++I + G F A+A+W+LETDGT LM+VL+ERDVDP RT 
Sbjct: 1259 QGIPQITKVYMHRPQTQDKKRVVIKDDGSFDAVAEWMLETDGTCLMRVLAERDVDPTRTV 1318

Query: 1284 SNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHG 1343
            SNDI EIF+ LGIEAVRK++E EM  V+ F G YVNYRHLALLCD+MT KGHLMAITRHG
Sbjct: 1319 SNDIVEIFEALGIEAVRKAIECEMYHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHG 1378

Query: 1344 INRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1403
            +NR DTGAL RCSFEETVD+LMDAA HAE DPM GVSE I++GQL ++GTGCFDLLLD+ 
Sbjct: 1379 LNRLDTGALARCSFEETVDILMDAATHAECDPMAGVSETIMLGQLAKIGTGCFDLLLDSA 1438

Query: 1404 KCKDGIEIPLATGMMGGPAGMF----FGSAATP 1432
            KC++   IPLA G++G   G+F    F   A+P
Sbjct: 1439 KCQEAQPIPLA-GVVG--MGLFNAPGFEGIASP 1468



 Score =  197 bits (501), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 111/205 (54%), Positives = 134/205 (65%), Gaps = 28/205 (13%)

Query: 781  SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 840
            +VRK++E EM  V+ F G YVNYRHLALLCD+MT KGHLMAITRHG+NR DTGAL RCSF
Sbjct: 1333 AVRKAIECEMYHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNRLDTGALARCSF 1392

Query: 841  EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM 900
            EETVD+LMDAA HAE DPM GVSE I++GQL ++GTGCFDLLLD+ KC++   IPLA G+
Sbjct: 1393 EETVDILMDAATHAECDPMAGVSETIMLGQLAKIGTGCFDLLLDSAKCQEAQPIPLA-GV 1451

Query: 901  MGGPAGMF----FGSAATPS---SMSPQ-----------MTPW-AQSTPAYNALMSP--- 938
            +G   G+F    F   A+P    SM P             TPW +  +PA +   SP   
Sbjct: 1452 VG--MGLFNAPGFEGIASPGLGLSMGPDGLPVLVGDIGYQTPWDSAHSPAGSIDASPNYR 1509

Query: 939  ---GAAMTPGGPGFSPSVAGEDQLS 960
               G A  P    FSP+V  +  LS
Sbjct: 1510 GALGGATAPHSAMFSPAVRYDSSLS 1534



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 81/135 (60%), Positives = 96/135 (71%), Gaps = 4/135 (2%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   +R   +QVIACVGQQNVEGKRIPFGFR RTLPHFI+DDYGPESRGFVENSYLAG
Sbjct: 731  VAGSKGSRINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAG 790

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEF 1117
            LTP+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N +     + 
Sbjct: 791  LTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQI----NQL 846

Query: 1118 VNVYYEMPDFDPTRI 1132
            + + Y     D T +
Sbjct: 847  IQLRYGEDGLDATHV 861



 Score =  137 bits (344), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 88/170 (51%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD TVRN + QLIQLRYGEDGL    VE QR+ T   SH  FE
Sbjct: 818 GYIQRRLIKAMESVMVKYDGTVRNQINQLIQLRYGEDGLDATHVEFQRLPTFKPSHAAFE 877

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +RFD  NER LRR   EDV+R L       +E                          
Sbjct: 878 HGFRFDIGNERALRRCMPEDVVRSLATDSQTQAE-------------------------- 911

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                    L+ EW +LC DRE LR I    +  VVLPCN+  ++   Q+
Sbjct: 912 ---------LDAEWMQLCADRETLRSIIRKTDDTVVLPCNINRLVMNAQK 952



 Score =  130 bits (327), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/153 (49%), Positives = 90/153 (58%), Gaps = 30/153 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L ++  +T IYYDPDP+N+V+ ED+E+V+ YYE+PDFD   IS W+LRIE  RK MT KK
Sbjct: 1126 LRRLVNSTYIYYDPDPKNSVVEEDREWVSTYYELPDFDVNAISSWMLRIEFARKGMTGKK 1185

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L+ME IS+KI   F                            G+DL C   DDN  KLV+
Sbjct: 1186 LSMEQISDKITRAF----------------------------GNDLICHIPDDNL-KLVM 1216

Query: 1649 RIRIMNSDDSKMQDEEDAV-DKMEDDMFLRCIE 1680
            RIRIMNSD  K   E D   DKMEDD FLR IE
Sbjct: 1217 RIRIMNSDLEKDLKEADTTSDKMEDDTFLRFIE 1249



 Score =  130 bits (326), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/77 (76%), Positives = 65/77 (84%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E EM  V+ F G YVNYRHLALLCD+MT KGHLMAITRHG+NR DTGAL RCSFEETV
Sbjct: 1337 AIECEMYHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNRLDTGALARCSFEETV 1396

Query: 576  DVLMDAAAHAEADPMRG 592
            D+LMDAA HAE DPM G
Sbjct: 1397 DILMDAATHAECDPMAG 1413



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 43/50 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           E+ + LG DP++ARPDWM++TVLPVPPL+VRPAVVM+G+ RNQ+ + + L
Sbjct: 192 EDCLSLGFDPRYARPDWMIITVLPVPPLAVRPAVVMYGATRNQDDLTHKL 241



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 34/46 (73%)

Query: 1497 RQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            R +ITPQ N+PVM IVQDTLTAV KMT+RDVFL++      + Y P
Sbjct: 483  RLVITPQANKPVMSIVQDTLTAVNKMTQRDVFLNRAEMMNLLMYLP 528


>gi|38232397|gb|AAR15034.1| RNA polymerase II largest subunit [Streptocephalus seali]
          Length = 370

 Score =  558 bits (1438), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 284/395 (71%), Positives = 305/395 (77%), Gaps = 51/395 (12%)

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKVVVEHG L+MGILCKK+LG S+GSLLHI FLELGH++CG+FYGNIQTV
Sbjct: 1   GPYKWISPGDTKVVVEHGELVMGILCKKTLGASAGSLLHIIFLELGHDICGKFYGNIQTV 60

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           +NNWLL EG                                              HSIGI
Sbjct: 61  INNWLLYEG----------------------------------------------HSIGI 74

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADPQTY +IQ  IKKAKEDVIEVI KAHN +LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 75  GDTIADPQTYSDIQATIKKAKEDVIEVITKAHNNELEPTPGNTLRQTFENQVNRILNDAR 134

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSAK SLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 135 DKTGGSAKNSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 194

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 195 FIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 254

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           + MV YD TVRNSVGQLIQLRYGEDGL GE VE Q + T+ LS++ FE KYRFD SNER 
Sbjct: 255 ACMVAYDGTVRNSVGQLIQLRYGEDGLAGELVEFQSLPTIKLSNRAFESKYRFDGSNERA 314

Query: 491 TLR-NVSSLRRVVNSKPLLIG----CWKLTSVEKE 520
             R     + R V S   LIG     W+  S ++E
Sbjct: 315 MRRIYTEDVIRDVLSNNELIGEIEKEWEALSKDRE 349



 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/161 (53%), Positives = 105/161 (65%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAME+ MV YD TVRNSVGQLIQLRYGEDGL GE VE Q + T+ LS++ FE
Sbjct: 243 GYIQRRLIKAMEACMVAYDGTVRNSVGQLIQLRYGEDGLAGELVEFQSLPTIKLSNRAFE 302

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KYRFD SNER +RRI+ EDV+R+++ + ++I E+EK                       
Sbjct: 303 SKYRFDGSNERAMRRIYTEDVIRDVLSNNELIGEIEK----------------------- 339

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                       EWE L +DREALR++F SGE+ VVLPCNL
Sbjct: 340 ------------EWEALSKDREALRKVFPSGENKVVLPCNL 368



 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 86/102 (84%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 167  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 226

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +      + YD   +N+V
Sbjct: 227  GGREGLIDTAVKTAETGYIQRRLIKAMEACMVAYDGTVRNSV 268


>gi|256082852|ref|XP_002577666.1| DNA-directed RNA polymerase II largest subunit [Schistosoma
           mansoni]
          Length = 1785

 Score =  554 bits (1427), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 268/419 (63%), Positives = 310/419 (73%), Gaps = 46/419 (10%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           N+ +MMN+LM+LP W+G+MP+P I KP+ LWTGKQ+FSL+IPG VN  RTHSTHP++ED 
Sbjct: 446 NRSEMMNLLMYLPTWNGRMPKPAIYKPQRLWTGKQLFSLVIPGRVNCIRTHSTHPEEEDI 505

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+V+ G L+ GILCKK+LG+ +GSL+HI  LE  H+    F+ NIQTV
Sbjct: 506 GPYKWISPGDTKVIVDDGDLISGILCKKTLGSGAGSLIHIVALEHHHDQVNMFFNNIQTV 565

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNNWLL+EG                                              H+IGI
Sbjct: 566 VNNWLLIEG----------------------------------------------HTIGI 579

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
            DT+ D  T  +I   I KAK+ V E+I +AHN DL+PTPGNTLRQTFEN VN+ILNDAR
Sbjct: 580 ADTLYDQATRRQISGTITKAKDAVFEIIDQAHNYDLQPTPGNTLRQTFENSVNKILNDAR 639

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTG  A++SL++YNN   MVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPH
Sbjct: 640 DKTGSCAQRSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQNVEGKRIPFGFRHRTLPH 699

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FI+DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 700 FIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 759

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           SVM+ YD TVRN + QLIQLRYGEDGL    VE QR+ T   S+  FE  +RFD  NER
Sbjct: 760 SVMIKYDGTVRNQINQLIQLRYGEDGLDATHVEFQRLPTFKPSNAVFEHGFRFDIGNER 818



 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 271/510 (53%), Positives = 337/510 (66%), Gaps = 54/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV- 1011
            V G+D+LSK+AN NATLL   L+R++LC K V  +YRLS EA +W++GE+  RFQQA + 
Sbjct: 913  VPGDDRLSKEANANATLLLSSLIRASLCAKKVIIDYRLSYEALDWVLGEVRARFQQAHIH 972

Query: 1012 ----IACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
                +  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 973  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINVSKRPK----- 1025

Query: 1051 ENSYLAGLTPS-EFFFHAMGGREGLIDTAVKTAETVNVL--VFLFQVTANTAIYYDPDPQ 1107
                    TPS   F      R+     A +T + V  L    L ++  +T IYYDPDPQ
Sbjct: 1026 --------TPSMTIFLTGQAARD-----AERTKDVVARLEHTTLRKLVNSTYIYYDPDPQ 1072

Query: 1108 NTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
            NT + ED+E+V+ YYE+PDFD   IS W+LRIE  RK MT KKL+ME I++KI   FG+D
Sbjct: 1073 NTAVEEDREWVSTYYELPDFDVNAISSWMLRIEFTRKGMTGKKLSMEQIADKITRAFGND 1132

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGI 1226
            L C   DDN  KLV+RIRIMNSD  K  +D +   DKMEDD FLR IEAN+L+D+TLQGI
Sbjct: 1133 LICHIPDDNL-KLVMRIRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191

Query: 1227 EAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSND 1286
              I KVYMHLP+T  KKR++I + G F  +A+W+LETDGT LM+VL+ERDVDPVRT SND
Sbjct: 1192 PQITKVYMHLPKTQDKKRVVIKDDGSFDTVAEWMLETDGTCLMRVLAERDVDPVRTVSND 1251

Query: 1287 ICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1346
            I EIF+ LGIEAVRK++E EM+ V+ F G YVNYRHLALLCD+MT KGHLMAITRHG+NR
Sbjct: 1252 IVEIFEALGIEAVRKAIECEMHHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNR 1311

Query: 1347 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1406
             DTGAL RCSFEETVD+LM+AA H+E DPM GVSE I++GQL R+GTGCFDLLLD+ KC+
Sbjct: 1312 LDTGALARCSFEETVDILMEAAIHSECDPMAGVSETIMLGQLARIGTGCFDLLLDSAKCQ 1371

Query: 1407 DGIEIPLATGMMGGPAGMFFGSAATPSSIP 1436
            +   IPL     GG  GM   +A  P  IP
Sbjct: 1372 EAQPIPL-----GGVLGMGLFNA--PDGIP 1394



 Score =  196 bits (497), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/187 (54%), Positives = 127/187 (67%), Gaps = 10/187 (5%)

Query: 781  SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 840
            +VRK++E EM+ V+ F G YVNYRHLALLCD+MT KGHLMAITRHG+NR DTGAL RCSF
Sbjct: 1263 AVRKAIECEMHHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNRLDTGALARCSF 1322

Query: 841  EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM 900
            EETVD+LM+AA H+E DPM GVSE I++GQL R+GTGCFDLLLD+ KC++   IPL  G+
Sbjct: 1323 EETVDILMEAAIHSECDPMAGVSETIMLGQLARIGTGCFDLLLDSAKCQEAQPIPLG-GV 1381

Query: 901  MGGPAGMFFGSAATPS-SMSPQMTPWAQSTPAYNALMSP------GAAMTPGGPGFSPSV 953
            +G   G+F      P    S   TPW  +     ++ SP      G A  P    FSP++
Sbjct: 1382 LG--MGLFNAPDGIPVLGDSGYHTPWDNAHSPVGSVDSPSYRGGLGGATAPHNAMFSPAM 1439

Query: 954  AGEDQLS 960
              +  LS
Sbjct: 1440 RYDSSLS 1446



 Score =  167 bits (422), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 82/135 (60%), Positives = 96/135 (71%), Gaps = 4/135 (2%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   +R   +QVIACVGQQNVEGKRIPFGFR RTLPHFI+DDYGPESRGFVENSYLAG
Sbjct: 661  VAGSKGSRINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAG 720

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEF 1117
            LTP+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  I YD   +N +     + 
Sbjct: 721  LTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIKYDGTVRNQI----NQL 776

Query: 1118 VNVYYEMPDFDPTRI 1132
            + + Y     D T +
Sbjct: 777  IQLRYGEDGLDATHV 791



 Score =  134 bits (337), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 89/170 (52%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVM+ YD TVRN + QLIQLRYGEDGL    VE QR+ T   S+  FE
Sbjct: 748 GYIQRRLIKAMESVMIKYDGTVRNQINQLIQLRYGEDGLDATHVEFQRLPTFKPSNAVFE 807

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +RFD  NER LRR   EDV+R L       SEL                         
Sbjct: 808 HGFRFDIGNERVLRRCMPEDVVRSLATDSQTQSEL------------------------- 842

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     E EW +LC DRE LR +    + +VVLPCN+  ++   Q+
Sbjct: 843 ----------ESEWLQLCSDREILRSVIKKTDDSVVLPCNINRLVMNAQK 882



 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/153 (49%), Positives = 90/153 (58%), Gaps = 30/153 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L K+  +T IYYDPDPQNT + ED+E+V+ YYE+PDFD   IS W+LRIE  RK MT KK
Sbjct: 1056 LRKLVNSTYIYYDPDPQNTAVEEDREWVSTYYELPDFDVNAISSWMLRIEFTRKGMTGKK 1115

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L+ME I++KI   F                            G+DL C   DDN  KLV+
Sbjct: 1116 LSMEQIADKITRAF----------------------------GNDLICHIPDDNL-KLVM 1146

Query: 1649 RIRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD  K  +D +   DKMEDD FLR IE
Sbjct: 1147 RIRIMNSDLEKDFKDADTTSDKMEDDTFLRFIE 1179



 Score =  127 bits (320), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/104 (60%), Positives = 75/104 (72%), Gaps = 4/104 (3%)

Query: 493  RNVSSLRRVVNSKPLLIGCWKLTSVEK----EMNTVLQFYGLYVNYRHLALLCDVMTAKG 548
            R+V  +R V N    +     + +V K    EM+ V+ F G YVNYRHLALLCD+MT KG
Sbjct: 1240 RDVDPVRTVSNDIVEIFEALGIEAVRKAIECEMHHVISFDGSYVNYRHLALLCDIMTVKG 1299

Query: 549  HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 592
            HLMAITRHG+NR DTGAL RCSFEETVD+LM+AA H+E DPM G
Sbjct: 1300 HLMAITRHGLNRLDTGALARCSFEETVDILMEAAIHSECDPMAG 1343



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 41/50 (82%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           E+ + LG DP++ARPDWM+ TVLPVPPL VRPAVVM+G+ RNQ+ + + L
Sbjct: 122 EDCLSLGFDPRYARPDWMIATVLPVPPLCVRPAVVMYGATRNQDDLTHKL 171



 Score = 61.6 bits (148), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 35/46 (76%)

Query: 1497 RQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            R +ITPQ N+PVMGIVQDTLTAV KMT+RDVFL++      + Y P
Sbjct: 413  RLVITPQANKPVMGIVQDTLTAVNKMTQRDVFLNRSEMMNLLMYLP 458


>gi|353231921|emb|CCD79276.1| putative dna-directed RNA polymerase II largest subunit
           [Schistosoma mansoni]
          Length = 1900

 Score =  553 bits (1424), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 268/419 (63%), Positives = 310/419 (73%), Gaps = 46/419 (10%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           N+ +MMN+LM+LP W+G+MP+P I KP+ LWTGKQ+FSL+IPG VN  RTHSTHP++ED 
Sbjct: 561 NRSEMMNLLMYLPTWNGRMPKPAIYKPQRLWTGKQLFSLVIPGRVNCIRTHSTHPEEEDI 620

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+V+ G L+ GILCKK+LG+ +GSL+HI  LE  H+    F+ NIQTV
Sbjct: 621 GPYKWISPGDTKVIVDDGDLISGILCKKTLGSGAGSLIHIVALEHHHDQVNMFFNNIQTV 680

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNNWLL+EG                                              H+IGI
Sbjct: 681 VNNWLLIEG----------------------------------------------HTIGI 694

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
            DT+ D  T  +I   I KAK+ V E+I +AHN DL+PTPGNTLRQTFEN VN+ILNDAR
Sbjct: 695 ADTLYDQATRRQISGTITKAKDAVFEIIDQAHNYDLQPTPGNTLRQTFENSVNKILNDAR 754

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTG  A++SL++YNN   MVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPH
Sbjct: 755 DKTGSCAQRSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQNVEGKRIPFGFRHRTLPH 814

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FI+DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 815 FIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 874

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           SVM+ YD TVRN + QLIQLRYGEDGL    VE QR+ T   S+  FE  +RFD  NER
Sbjct: 875 SVMIKYDGTVRNQINQLIQLRYGEDGLDATHVEFQRLPTFKPSNAVFEHGFRFDIGNER 933



 Score =  504 bits (1297), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/510 (53%), Positives = 338/510 (66%), Gaps = 54/510 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV- 1011
            V G+D+LSK+AN NATLL   L+R++LC K V  +YRLS EA +W++GE+  RFQQA + 
Sbjct: 1028 VPGDDRLSKEANANATLLLSSLIRASLCAKKVIIDYRLSYEALDWVLGEVRARFQQAHIH 1087

Query: 1012 ----IACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
                +  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1088 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINVSKRPK----- 1140

Query: 1051 ENSYLAGLTPS-EFFFHAMGGREGLIDTAVKTAETVNVL--VFLFQVTANTAIYYDPDPQ 1107
                    TPS   F      R+     A +T + V  L    L ++  +T IYYDPDPQ
Sbjct: 1141 --------TPSMTIFLTGQAARD-----AERTKDVVARLEHTTLRKLVNSTYIYYDPDPQ 1187

Query: 1108 NTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
            NTV+ ED+E+V+ YYE+PDFD   IS W+LRIE  RK MT KKL+ME I++KI   FG+D
Sbjct: 1188 NTVVEEDREWVSTYYELPDFDVNAISSWMLRIEFTRKGMTGKKLSMEQIADKITRAFGND 1247

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGI 1226
            L C   DDN  KLV+RIRIMNSD  K  +D +   DKMEDD FLR IEAN+L+D+TLQGI
Sbjct: 1248 LICHIPDDNL-KLVMRIRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1306

Query: 1227 EAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSND 1286
              I KVYMHLP+T  KKR++I + G F  +A+W+LETDGT LM+VL+ERDVDPVRT SND
Sbjct: 1307 PQITKVYMHLPKTQDKKRVVIKDDGSFDTVAEWMLETDGTCLMRVLAERDVDPVRTVSND 1366

Query: 1287 ICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1346
            I EIF+ LGIEAVRK++E EM+ V+ F G YVNYRHLALLCD+MT KGHLMAITRHG+NR
Sbjct: 1367 IVEIFEALGIEAVRKAIECEMHHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNR 1426

Query: 1347 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1406
             DTGAL RCSFEETVD+LM+AA H+E DPM GVSE I++GQL R+GTGCFDLLLD+ KC+
Sbjct: 1427 LDTGALARCSFEETVDILMEAAIHSECDPMAGVSETIMLGQLARIGTGCFDLLLDSAKCQ 1486

Query: 1407 DGIEIPLATGMMGGPAGMFFGSAATPSSIP 1436
            +   IPL     GG  GM   +A  P  IP
Sbjct: 1487 EAQPIPL-----GGVLGMGLFNA--PDGIP 1509



 Score =  195 bits (496), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/187 (54%), Positives = 127/187 (67%), Gaps = 10/187 (5%)

Query: 781  SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 840
            +VRK++E EM+ V+ F G YVNYRHLALLCD+MT KGHLMAITRHG+NR DTGAL RCSF
Sbjct: 1378 AVRKAIECEMHHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNRLDTGALARCSF 1437

Query: 841  EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM 900
            EETVD+LM+AA H+E DPM GVSE I++GQL R+GTGCFDLLLD+ KC++   IPL  G+
Sbjct: 1438 EETVDILMEAAIHSECDPMAGVSETIMLGQLARIGTGCFDLLLDSAKCQEAQPIPLG-GV 1496

Query: 901  MGGPAGMFFGSAATPS-SMSPQMTPWAQSTPAYNALMSP------GAAMTPGGPGFSPSV 953
            +G   G+F      P    S   TPW  +     ++ SP      G A  P    FSP++
Sbjct: 1497 LG--MGLFNAPDGIPVLGDSGYHTPWDNAHSPVGSVDSPSYRGGLGGATAPHNAMFSPAM 1554

Query: 954  AGEDQLS 960
              +  LS
Sbjct: 1555 RYDSSLS 1561



 Score =  166 bits (421), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 82/135 (60%), Positives = 96/135 (71%), Gaps = 4/135 (2%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   +R   +QVIACVGQQNVEGKRIPFGFR RTLPHFI+DDYGPESRGFVENSYLAG
Sbjct: 776  VAGSKGSRINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAG 835

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEF 1117
            LTP+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  I YD   +N +     + 
Sbjct: 836  LTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIKYDGTVRNQI----NQL 891

Query: 1118 VNVYYEMPDFDPTRI 1132
            + + Y     D T +
Sbjct: 892  IQLRYGEDGLDATHV 906



 Score =  134 bits (337), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 89/170 (52%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVM+ YD TVRN + QLIQLRYGEDGL    VE QR+ T   S+  FE
Sbjct: 863 GYIQRRLIKAMESVMIKYDGTVRNQINQLIQLRYGEDGLDATHVEFQRLPTFKPSNAVFE 922

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +RFD  NER LRR   EDV+R L       SEL                         
Sbjct: 923 HGFRFDIGNERVLRRCMPEDVVRSLATDSQTQSEL------------------------- 957

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     E EW +LC DRE LR +    + +VVLPCN+  ++   Q+
Sbjct: 958 ----------ESEWLQLCSDREILRSVIKKTDDSVVLPCNINRLVMNAQK 997



 Score =  134 bits (336), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/153 (49%), Positives = 91/153 (59%), Gaps = 30/153 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L K+  +T IYYDPDPQNTV+ ED+E+V+ YYE+PDFD   IS W+LRIE  RK MT KK
Sbjct: 1171 LRKLVNSTYIYYDPDPQNTVVEEDREWVSTYYELPDFDVNAISSWMLRIEFTRKGMTGKK 1230

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L+ME I++KI   F                            G+DL C   DDN  KLV+
Sbjct: 1231 LSMEQIADKITRAF----------------------------GNDLICHIPDDNL-KLVM 1261

Query: 1649 RIRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMNSD  K  +D +   DKMEDD FLR IE
Sbjct: 1262 RIRIMNSDLEKDFKDADTTSDKMEDDTFLRFIE 1294



 Score =  127 bits (320), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/104 (60%), Positives = 75/104 (72%), Gaps = 4/104 (3%)

Query: 493  RNVSSLRRVVNSKPLLIGCWKLTSVEK----EMNTVLQFYGLYVNYRHLALLCDVMTAKG 548
            R+V  +R V N    +     + +V K    EM+ V+ F G YVNYRHLALLCD+MT KG
Sbjct: 1355 RDVDPVRTVSNDIVEIFEALGIEAVRKAIECEMHHVISFDGSYVNYRHLALLCDIMTVKG 1414

Query: 549  HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 592
            HLMAITRHG+NR DTGAL RCSFEETVD+LM+AA H+E DPM G
Sbjct: 1415 HLMAITRHGLNRLDTGALARCSFEETVDILMEAAIHSECDPMAG 1458



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 41/50 (82%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           E+ + LG DP++ARPDWM+ TVLPVPPL VRPAVVM+G+ RNQ+ + + L
Sbjct: 237 EDCLSLGFDPRYARPDWMIATVLPVPPLCVRPAVVMYGATRNQDDLTHKL 286



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 35/46 (76%)

Query: 1497 RQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            R +ITPQ N+PVMGIVQDTLTAV KMT+RDVFL++      + Y P
Sbjct: 528  RLVITPQANKPVMGIVQDTLTAVNKMTQRDVFLNRSEMMNLLMYLP 573


>gi|321468706|gb|EFX79690.1| hypothetical protein DAPPUDRAFT_244675 [Daphnia pulex]
          Length = 475

 Score =  548 bits (1411), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 265/372 (71%), Positives = 297/372 (79%), Gaps = 47/372 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMP+P ILKP+PLWTGKQ+F+LIIPGNVNM  THSTHPDDED G
Sbjct: 149 KEQMMNLLMFLPTWDGKMPKPAILKPRPLWTGKQLFTLIIPGNVNMMITHSTHPDDEDEG 208

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VE+G L+MGILCKK+LG S+ SLLHI F+ELGHEVCGRFYGNIQTV+
Sbjct: 209 PYKWISPGDTKVMVENGELVMGILCKKTLGASAASLLHIIFMELGHEVCGRFYGNIQTVI 268

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGIG
Sbjct: 269 NNWLLYEG----------------------------------------------HSIGIG 282

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           D + D  TY++IQ  I+ AKEDVIEVIQK+ N +LEPTPGNTLRQT ENQVNRIL DAR+
Sbjct: 283 DMLGDRPTYMDIQATIQNAKEDVIEVIQKSRNDELEPTPGNTLRQTLENQVNRILIDARN 342

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           +TGGSAK SLTE+NNLKAMVVAGS GSN+NISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 343 ETGGSAKNSLTEFNNLKAMVVAGSSGSNVNISQVIACVGQQNVEGKRIPFGFRKRTLPHF 402

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDD+GPESRGFVENSY++GLTPSEF+FHAM  R+ LIDTAVKTA TGYIQR LIKAMES
Sbjct: 403 IKDDFGPESRGFVENSYVSGLTPSEFYFHAM-DRKALIDTAVKTANTGYIQRSLIKAMES 461

Query: 432 VMVHYDCTVRNS 443
           VMVHYD TV+++
Sbjct: 462 VMVHYDGTVQDA 473



 Score =  148 bits (374), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/95 (72%), Positives = 80/95 (84%), Gaps = 1/95 (1%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD+GPESRGFVENSY++GLTPSEF+FHAM
Sbjct: 374  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDFGPESRGFVENSYVSGLTPSEFYFHAM 433

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
              R+ LIDTAVKTA T  +   L +   +  ++YD
Sbjct: 434  -DRKALIDTAVKTANTGYIQRSLIKAMESVMVHYD 467



 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 37/43 (86%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENI +TPRQIITPQ N+PVMGIVQDTL    K+TKRDVFL+K
Sbjct: 107  VENILLTPRQIITPQANKPVMGIVQDTLVGTYKLTKRDVFLEK 149



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/25 (80%), Positives = 23/25 (92%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNS 616
           GYIQR LIKAMESVMVHYD TV+++
Sbjct: 449 GYIQRSLIKAMESVMVHYDGTVQDA 473


>gi|321450862|gb|EFX62718.1| hypothetical protein DAPPUDRAFT_67765 [Daphnia pulex]
          Length = 1138

 Score =  547 bits (1409), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 280/417 (67%), Positives = 314/417 (75%), Gaps = 50/417 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMPQP ILKP+P WT   V S+IIPGNVNM RTHSTHPDDED G
Sbjct: 529 KEQMMNLLMFLPTWDGKMPQPAILKPRPQWTAA-VHSIIIPGNVNMMRTHSTHPDDEDEG 587

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKVV+E+G L+MGILCKK+LG S+ SLLHI F+ELGHEVCGRFYGNIQTV+
Sbjct: 588 PYKWISPGDTKVVIENGELVMGILCKKTLGASAASLLHIIFMELGHEVCGRFYGNIQTVI 647

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGI 
Sbjct: 648 NNWLLYEG----------------------------------------------HSIGIE 661

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DT+AD QTY+ IQ  I+KAKEDVIE+IQK+HN +LEPTPGNTLRQTFENQVNRILN+A+ 
Sbjct: 662 DTLADCQTYMGIQDTIQKAKEDVIEIIQKSHNDELEPTPGNTLRQTFENQVNRILNNAQQ 721

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           +    AK SLTEYNNLKAM VAGS GS+I  SQ IACVGQQNVEG+RIPFGFRKRTLPHF
Sbjct: 722 QASALAKNSLTEYNNLKAMAVAGSSGSSITTSQAIACVGQQNVEGQRIPFGFRKRTLPHF 781

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDD GPESRGFVENSYL GLTPSEF+FHAM GRE LI  A    ET  I R+L+K MES
Sbjct: 782 IKDDNGPESRGFVENSYLTGLTPSEFYFHAMAGRELLIYEA--RTETDII-RQLVKGMES 838

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
           VMVHYD TVRNS G+L+Q  YGEDGL  E+VE Q++ TV LS+  FE K++FDPSNE
Sbjct: 839 VMVHYDGTVRNSAGRLLQFCYGEDGLAAESVELQKMPTVNLSNTVFEKKFKFDPSNE 895



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 105/168 (62%), Gaps = 35/168 (20%)

Query: 594 IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDK 653
           I R+L+K MESVMVHYD TVRNS G+L+Q  YGEDGL  E+VE Q++ TV LS+  FE K
Sbjct: 828 IIRQLVKGMESVMVHYDGTVRNSAGRLLQFCYGEDGLAAESVELQKMPTVNLSNTVFEKK 887

Query: 654 YRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMG 713
           ++FDPSNE  LR +FNE++ REL  S +VI+E+E E                        
Sbjct: 888 FKFDPSNEHNLRSMFNEEITRELTSSAEVITEIEHE------------------------ 923

Query: 714 SGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      WE+L +DREALR+IF +GE+ VVLPCNL  +I+ +Q+
Sbjct: 924 -----------WEQLYKDREALRQIFPTGENKVVLPCNLQRMIWDVQK 960



 Score =  134 bits (338), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 75/101 (74%), Gaps = 3/101 (2%)

Query: 1010 QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 1069
            Q IACVGQQNVEG+RIPFGFRKRTLPHFIKDD GPESRGFVENSYL GLTPSEF+FHAM 
Sbjct: 754  QAIACVGQQNVEGQRIPFGFRKRTLPHFIKDDNGPESRGFVENSYLTGLTPSEFYFHAMA 813

Query: 1070 GREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GRE LI  A    + +  LV   +   +  ++YD   +N+ 
Sbjct: 814  GRELLIYEARTETDIIRQLV---KGMESVMVHYDGTVRNSA 851



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 53/59 (89%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V GED+LS QAN+NATLLFQCLVRSTLC+K +AE YRLSSEAFEWL+G+IE RFQQAQ 
Sbjct: 991  VVGEDKLSIQANQNATLLFQCLVRSTLCSKRLAEEYRLSSEAFEWLIGKIETRFQQAQA 1049



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VE++ V+ R IITPQ ++PVMGIVQDTL    K+TKRDVFL+K
Sbjct: 487  VESLLVSSRLIITPQASKPVMGIVQDTLVGAYKLTKRDVFLEK 529



 Score = 43.5 bits (101), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/23 (73%), Positives = 20/23 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVL 52
           E+  ILGMDPK+ARPDWM+VT L
Sbjct: 206 EDCAILGMDPKYARPDWMIVTCL 228


>gi|194460294|gb|ACF71822.1| RNA polymerase II [Eufriesea concava]
 gi|194460296|gb|ACF71823.1| RNA polymerase II [Euglossa rugilabris]
 gi|194460300|gb|ACF71825.1| RNA polymerase II [Euglossa occidentalis]
 gi|194460309|gb|ACF71829.1| RNA polymerase II [Euglossa jamaicensis]
 gi|194460317|gb|ACF71833.1| RNA polymerase II [Eufriesea violacea]
 gi|194460321|gb|ACF71835.1| RNA polymerase II [Euglossa cyanura]
 gi|194460327|gb|ACF71838.1| RNA polymerase II [Euglossa mandibularis]
 gi|194460329|gb|ACF71839.1| RNA polymerase II [Euglossa dodsoni]
 gi|194460335|gb|ACF71842.1| RNA polymerase II [Euglossa polita]
 gi|194460337|gb|ACF71843.1| RNA polymerase II [Euglossa truncata]
 gi|194460343|gb|ACF71846.1| RNA polymerase II [Euglossa ignita]
 gi|194460351|gb|ACF71850.1| RNA polymerase II [Eulaema boliviensis]
 gi|194460359|gb|ACF71854.1| RNA polymerase II [Euglossa championi]
 gi|194460361|gb|ACF71855.1| RNA polymerase II [Euglossa hansoni]
 gi|194460367|gb|ACF71858.1| RNA polymerase II [Eulaema cingulata]
 gi|194460369|gb|ACF71859.1| RNA polymerase II [Eulaema mocsaryi]
 gi|194460377|gb|ACF71863.1| RNA polymerase II [Eufriesea chrysopyga]
 gi|194460389|gb|ACF71869.1| RNA polymerase II [Euglossa cybelia]
 gi|194460395|gb|ACF71872.1| RNA polymerase II [Euglossa augaspis]
 gi|194460404|gb|ACF71876.1| RNA polymerase II [Euglossa chlorina]
 gi|194460414|gb|ACF71881.1| RNA polymerase II [Euglossa dissimula]
 gi|194460420|gb|ACF71884.1| RNA polymerase II [Euglossa sp. EU47]
 gi|194460428|gb|ACF71888.1| RNA polymerase II [Euglossa imperialis]
 gi|194460432|gb|ACF71890.1| RNA polymerase II [Eufriesea violascens]
 gi|194460442|gb|ACF71895.1| RNA polymerase II [Euglossa rufipes]
 gi|194460444|gb|ACF71896.1| RNA polymerase II [Euglossa analis]
 gi|194460468|gb|ACF71908.1| RNA polymerase II [Euglossa obtusa]
 gi|194460474|gb|ACF71911.1| RNA polymerase II [Euglossa atroveneta]
 gi|194460476|gb|ACF71912.1| RNA polymerase II [Euglossa prasina]
 gi|194460488|gb|ACF71918.1| RNA polymerase II [Euglossa despecta]
 gi|194460492|gb|ACF71920.1| RNA polymerase II [Euglossa villosiventris]
 gi|194460506|gb|ACF71927.1| RNA polymerase II [Eulaema chocoana]
          Length = 280

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 264/326 (80%), Positives = 275/326 (84%), Gaps = 46/326 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG     
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG----- 115

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
                                                    HSIGIGDTIADPQTYLEIQ
Sbjct: 116 -----------------------------------------HSIGIGDTIADPQTYLEIQ 134

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
            AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 135 KAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 254

Query: 385 ENSYLAGLTPSEFFFHAMGGREGLID 410
           ENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 255 ENSYLAGLTPSEFYFHAMGGREGLID 280



 Score =  147 bits (372), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 272

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 273  GGREGLID 280


>gi|259016120|gb|ACV89340.1| RNA polymerase II 215kD subunit [Blattella germanica]
          Length = 290

 Score =  543 bits (1400), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 264/327 (80%), Positives = 276/327 (84%), Gaps = 46/327 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLPIWDGKMPQP I+KPKPLWTGKQVFSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 10  KEQMMNLLMFLPIWDGKMPQPAIMKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDDG 69

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEVCG+FYGNIQTVV
Sbjct: 70  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGQFYGNIQTVV 129

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 130 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 183

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 184 ----------------------------------------NTLRQTFENQVNRILNDARD 203

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 204 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 263

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFF 398
           IKDDYGPESRGFVENSYLAGLTPSEFF
Sbjct: 264 IKDDYGPESRGFVENSYLAGLTPSEFF 290



 Score =  123 bits (309), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 55/56 (98%), Positives = 56/56 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 1064
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF
Sbjct: 235  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 290


>gi|194460325|gb|ACF71837.1| RNA polymerase II [Euglossa variabilis]
          Length = 279

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/325 (80%), Positives = 274/325 (84%), Gaps = 46/325 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG     
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG----- 115

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
                                                    HSIGIGDTIADPQTYLEIQ
Sbjct: 116 -----------------------------------------HSIGIGDTIADPQTYLEIQ 134

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
            AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 135 KAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 254

Query: 385 ENSYLAGLTPSEFFFHAMGGREGLI 409
           ENSYLAGLTPSEF+FHAMGGREGLI
Sbjct: 255 ENSYLAGLTPSEFYFHAMGGREGLI 279



 Score =  145 bits (366), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/67 (97%), Positives = 67/67 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 272

Query: 1069 GGREGLI 1075
            GGREGLI
Sbjct: 273  GGREGLI 279


>gi|194460401|gb|ACF71875.1| RNA polymerase II [Euglossa ioprosopa]
          Length = 280

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/326 (80%), Positives = 274/326 (84%), Gaps = 46/326 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG     
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG----- 115

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
                                                    HSIGIGDTIADPQTYLEIQ
Sbjct: 116 -----------------------------------------HSIGIGDTIADPQTYLEIQ 134

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
            AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGG AKKSLTEY
Sbjct: 135 KAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGXAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 254

Query: 385 ENSYLAGLTPSEFFFHAMGGREGLID 410
           ENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 255 ENSYLAGLTPSEFYFHAMGGREGLID 280



 Score =  147 bits (371), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 272

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 273  GGREGLID 280


>gi|194460284|gb|ACF71817.1| RNA polymerase II [Exaerete smaragdina]
 gi|194460460|gb|ACF71904.1| RNA polymerase II [Eulaema nigrita]
 gi|194460508|gb|ACF71928.1| RNA polymerase II [Eulaema polychroma]
          Length = 280

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/326 (80%), Positives = 274/326 (84%), Gaps = 46/326 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDG MPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGXMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG     
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG----- 115

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
                                                    HSIGIGDTIADPQTYLEIQ
Sbjct: 116 -----------------------------------------HSIGIGDTIADPQTYLEIQ 134

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
            AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 135 KAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 254

Query: 385 ENSYLAGLTPSEFFFHAMGGREGLID 410
           ENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 255 ENSYLAGLTPSEFYFHAMGGREGLID 280



 Score =  147 bits (371), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 272

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 273  GGREGLID 280


>gi|194460393|gb|ACF71871.1| RNA polymerase II [Euglossa allosticta]
          Length = 280

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/326 (80%), Positives = 274/326 (84%), Gaps = 46/326 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGK PQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKXPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG     
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG----- 115

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
                                                    HSIGIGDTIADPQTYLEIQ
Sbjct: 116 -----------------------------------------HSIGIGDTIADPQTYLEIQ 134

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
            AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 135 KAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 254

Query: 385 ENSYLAGLTPSEFFFHAMGGREGLID 410
           ENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 255 ENSYLAGLTPSEFYFHAMGGREGLID 280



 Score =  147 bits (372), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 272

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 273  GGREGLID 280


>gi|194460510|gb|ACF71929.1| RNA polymerase II [Eufriesea anisochlora]
          Length = 280

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/326 (80%), Positives = 274/326 (84%), Gaps = 46/326 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG     
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG----- 115

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
                                                    HSIGIGDTIADPQTYLEIQ
Sbjct: 116 -----------------------------------------HSIGIGDTIADPQTYLEIQ 134

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
            AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 135 KAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 254

Query: 385 ENSYLAGLTPSEFFFHAMGGREGLID 410
           ENSYLAGLT SEF+FHAMGGREGLID
Sbjct: 255 ENSYLAGLTTSEFYFHAMGGREGLID 280



 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 65/68 (95%), Positives = 67/68 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT SEF+FHAM
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTTSEFYFHAM 272

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 273  GGREGLID 280


>gi|194460333|gb|ACF71841.1| RNA polymerase II [Euglossa melanotricha]
 gi|194460418|gb|ACF71883.1| RNA polymerase II [Euglossa fuscifrons]
 gi|194460454|gb|ACF71901.1| RNA polymerase II [Euglossa cordata]
 gi|194460484|gb|ACF71916.1| RNA polymerase II [Euglossa liopoda]
          Length = 280

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/325 (80%), Positives = 274/325 (84%), Gaps = 46/325 (14%)

Query: 86  DGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVV 145
           DGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+V
Sbjct: 2   DGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMV 61

Query: 146 EHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIG 205
           EHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG      
Sbjct: 62  EHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG------ 115

Query: 206 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQM 265
                                                   HSIGIGDTIADPQTYLEIQ 
Sbjct: 116 ----------------------------------------HSIGIGDTIADPQTYLEIQK 135

Query: 266 AIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 325
           AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN
Sbjct: 136 AIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 195

Query: 326 NLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 385
           NLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE
Sbjct: 196 NLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 255

Query: 386 NSYLAGLTPSEFFFHAMGGREGLID 410
           NSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 256 NSYLAGLTPSEFYFHAMGGREGLID 280



 Score =  147 bits (372), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 272

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 273  GGREGLID 280


>gi|62911589|gb|AAY21425.1| RNA polymerase II [Holcopasites ruthae]
 gi|62911727|gb|AAY21494.1| RNA polymerase II [Meliturgula minima]
 gi|62911729|gb|AAY21495.1| RNA polymerase II [Meliturgula haematospila]
          Length = 296

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/325 (80%), Positives = 273/325 (84%), Gaps = 46/325 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPESRGFVENSYLAGLTPSE 396
           IKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 272 IKDDYGPESRGFVENSYLAGLTPSE 296



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/54 (98%), Positives = 54/54 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 1062
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 296


>gi|194460408|gb|ACF71878.1| RNA polymerase II [Euglossa laevicincta]
 gi|194460498|gb|ACF71923.1| RNA polymerase II [Euglossa bursigera]
          Length = 279

 Score =  541 bits (1395), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 263/325 (80%), Positives = 274/325 (84%), Gaps = 46/325 (14%)

Query: 86  DGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVV 145
           DGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+V
Sbjct: 1   DGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMV 60

Query: 146 EHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIG 205
           EHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG      
Sbjct: 61  EHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG------ 114

Query: 206 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQM 265
                                                   HSIGIGDTIADPQTYLEIQ 
Sbjct: 115 ----------------------------------------HSIGIGDTIADPQTYLEIQK 134

Query: 266 AIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 325
           AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN
Sbjct: 135 AIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 194

Query: 326 NLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 385
           NLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE
Sbjct: 195 NLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 254

Query: 386 NSYLAGLTPSEFFFHAMGGREGLID 410
           NSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 255 NSYLAGLTPSEFYFHAMGGREGLID 279



 Score =  147 bits (372), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 212  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 271

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 272  GGREGLID 279


>gi|194460502|gb|ACF71925.1| RNA polymerase II [Euglossa macrorhyncha]
          Length = 280

 Score =  541 bits (1393), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 263/325 (80%), Positives = 274/325 (84%), Gaps = 46/325 (14%)

Query: 86  DGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVV 145
           DGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+V
Sbjct: 2   DGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMV 61

Query: 146 EHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIG 205
           EHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG      
Sbjct: 62  EHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG------ 115

Query: 206 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQM 265
                                                   HSIGIGDTIADPQTYLEIQ 
Sbjct: 116 ----------------------------------------HSIGIGDTIADPQTYLEIQK 135

Query: 266 AIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 325
           AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN
Sbjct: 136 AIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 195

Query: 326 NLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 385
           NLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE
Sbjct: 196 NLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 255

Query: 386 NSYLAGLTPSEFFFHAMGGREGLID 410
           NSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 256 NSYLAGLTPSEFYFHAMGGREGLID 280



 Score =  147 bits (372), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 272

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 273  GGREGLID 280


>gi|62911525|gb|AAY21393.1| RNA polymerase II [Andrena brooksi]
          Length = 296

 Score =  541 bits (1393), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 262/325 (80%), Positives = 273/325 (84%), Gaps = 46/325 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDEG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPESRGFVENSYLAGLTPSE 396
           IKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 272 IKDDYGPESRGFVENSYLAGLTPSE 296



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/54 (98%), Positives = 54/54 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 1062
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 296


>gi|62911625|gb|AAY21443.1| RNA polymerase II [Melitta leporina]
          Length = 296

 Score =  541 bits (1393), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 262/325 (80%), Positives = 273/325 (84%), Gaps = 46/325 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHS+HPDDED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSSHPDDEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPESRGFVENSYLAGLTPSE 396
           IKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 272 IKDDYGPESRGFVENSYLAGLTPSE 296



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/54 (98%), Positives = 54/54 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 1062
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 296


>gi|62911521|gb|AAY21391.1| RNA polymerase II [Anthophora montana]
 gi|62911523|gb|AAY21392.1| RNA polymerase II [Anacrabro ocellatus]
 gi|62911557|gb|AAY21409.1| RNA polymerase II [Colletes skinneri]
 gi|62911565|gb|AAY21413.1| RNA polymerase II [Dasypoda argentata]
 gi|62911567|gb|AAY21414.1| RNA polymerase II [Dasypoda hirtipes]
 gi|62911605|gb|AAY21433.1| RNA polymerase II [Leioproctus plumosus]
 gi|62911611|gb|AAY21436.1| RNA polymerase II [Leioproctus sp. BND-2004]
 gi|62911615|gb|AAY21438.1| RNA polymerase II [Leiopodus singularis]
 gi|62911629|gb|AAY21445.1| RNA polymerase II [Meganomia binghami]
 gi|62911679|gb|AAY21470.1| RNA polymerase II [Thyreus delumbatus]
 gi|62911685|gb|AAY21473.1| RNA polymerase II [Tachysphex yolo]
 gi|62911699|gb|AAY21480.1| RNA polymerase II [Coelioxys afra]
 gi|62911713|gb|AAY21487.1| RNA polymerase II [Hesperapis rhodocerata]
 gi|71480588|gb|AAZ32219.1| RNA polymerase II large subunit [Zacosmia maculata]
          Length = 296

 Score =  540 bits (1392), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 262/325 (80%), Positives = 273/325 (84%), Gaps = 46/325 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPESRGFVENSYLAGLTPSE 396
           IKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 272 IKDDYGPESRGFVENSYLAGLTPSE 296



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/54 (98%), Positives = 54/54 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 1062
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 296


>gi|62911569|gb|AAY21415.1| RNA polymerase II [Dasypoda visnaga]
          Length = 294

 Score =  540 bits (1391), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 262/325 (80%), Positives = 273/325 (84%), Gaps = 46/325 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 16  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 75

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 76  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 135

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 136 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 189

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 190 ----------------------------------------NTLRQTFENQVNRILNDARD 209

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 210 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 269

Query: 372 IKDDYGPESRGFVENSYLAGLTPSE 396
           IKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 270 IKDDYGPESRGFVENSYLAGLTPSE 294



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/54 (98%), Positives = 54/54 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 1062
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 241  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 294


>gi|321468709|gb|EFX79693.1| hypothetical protein DAPPUDRAFT_244672 [Daphnia pulex]
          Length = 920

 Score =  540 bits (1391), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 274/417 (65%), Positives = 313/417 (75%), Gaps = 49/417 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMP+P ILKP+PLWT   V S+IIPGNVNM RTHSTHPDDED G
Sbjct: 546 KEQMMNLLMFLPTWDGKMPKPAILKPRPLWTA--VHSIIIPGNVNMMRTHSTHPDDEDEG 603

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKVV+E+G L+MGILCKK+LG S+ SLLHI F+ELGHEVCGRFYGNIQTV+
Sbjct: 604 PYKWISPGDTKVVIENGELVMGILCKKTLGASAASLLHIIFMELGHEVCGRFYGNIQTVI 663

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EG                                              HSIGI 
Sbjct: 664 NNWLLYEG----------------------------------------------HSIGIE 677

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DT+A+ QTY+ IQ  I+ AKEDVIEVI+++HN +LEPTPGNTLRQTFENQVNRI+ DA+ 
Sbjct: 678 DTLANCQTYMGIQDTIQNAKEDVIEVIERSHNDELEPTPGNTLRQTFENQVNRIIYDAQQ 737

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           +    AK SLTEYNNLKAM VAGS GS+I  SQ IACVGQQNVEG+RIPFGFRKRTLPHF
Sbjct: 738 QASALAKNSLTEYNNLKAMAVAGSSGSSITTSQAIACVGQQNVEGQRIPFGFRKRTLPHF 797

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDD GPESRGFVENSYL GLTP EF+FHAM GRE LI      +ETG I R+L+K MES
Sbjct: 798 IKDDNGPESRGFVENSYLTGLTPCEFYFHAMAGRELLIYETRIKSETGII-RQLVKGMES 856

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
           VMVHYD TVRNS G+L+Q  YGEDGL  E+VE Q++ TV LS++ FE K++ DPSNE
Sbjct: 857 VMVHYDGTVRNSAGRLLQFSYGEDGLAAESVELQKMPTVNLSNEAFEKKFKCDPSNE 913



 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 75/101 (74%), Gaps = 1/101 (0%)

Query: 1010 QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 1069
            Q IACVGQQNVEG+RIPFGFRKRTLPHFIKDD GPESRGFVENSYL GLTP EF+FHAM 
Sbjct: 770  QAIACVGQQNVEGQRIPFGFRKRTLPHFIKDDNGPESRGFVENSYLTGLTPCEFYFHAMA 829

Query: 1070 GREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GRE LI      +ET  ++  L +   +  ++YD   +N+ 
Sbjct: 830  GRELLIYETRIKSET-GIIRQLVKGMESVMVHYDGTVRNSA 869



 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 54/68 (79%)

Query: 594 IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDK 653
           I R+L+K MESVMVHYD TVRNS G+L+Q  YGEDGL  E+VE Q++ TV LS++ FE K
Sbjct: 846 IIRQLVKGMESVMVHYDGTVRNSAGRLLQFSYGEDGLAAESVELQKMPTVNLSNEAFEKK 905

Query: 654 YRFDPSNE 661
           ++ DPSNE
Sbjct: 906 FKCDPSNE 913



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VE++ V+ R IITPQ ++PVMGIVQDTL    K+TKRDVFL+K
Sbjct: 504  VESLLVSSRLIITPQASKPVMGIVQDTLVGAYKLTKRDVFLEK 546



 Score = 43.9 bits (102), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 17/23 (73%), Positives = 20/23 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVL 52
           E+  ILGMDPK+ARPDWM+VT L
Sbjct: 223 EDCAILGMDPKYARPDWMIVTCL 245


>gi|71480590|gb|AAZ32220.1| RNA polymerase II large subunit [Lithurgus apicalis]
          Length = 288

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 262/325 (80%), Positives = 273/325 (84%), Gaps = 46/325 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 10  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 69

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 70  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 129

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 130 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 183

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 184 ----------------------------------------NTLRQTFENQVNRILNDARD 203

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 204 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 263

Query: 372 IKDDYGPESRGFVENSYLAGLTPSE 396
           IKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 264 IKDDYGPESRGFVENSYLAGLTPSE 288



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/54 (98%), Positives = 54/54 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 1062
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 235  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 288


>gi|194460422|gb|ACF71885.1| RNA polymerase II [Euglossa igniventris]
          Length = 277

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 261/323 (80%), Positives = 272/323 (84%), Gaps = 46/323 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG     
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG----- 115

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
                                                    HSIGIGDTIADPQTYLEIQ
Sbjct: 116 -----------------------------------------HSIGIGDTIADPQTYLEIQ 134

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
            AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 135 KAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 254

Query: 385 ENSYLAGLTPSEFFFHAMGGREG 407
           ENSYLAGLTPSEF+FHAMGGREG
Sbjct: 255 ENSYLAGLTPSEFYFHAMGGREG 277



 Score =  142 bits (357), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/65 (96%), Positives = 65/65 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 272

Query: 1069 GGREG 1073
            GGREG
Sbjct: 273  GGREG 277


>gi|62911725|gb|AAY21493.1| RNA polymerase II [Meliponula erythra]
          Length = 296

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 261/325 (80%), Positives = 273/325 (84%), Gaps = 46/325 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPESRGFVENSYLAGLTPSE 396
           IKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 272 IKDDYGPESRGFVENSYLAGLTPSE 296



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/54 (98%), Positives = 54/54 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 1062
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 296


>gi|194460504|gb|ACF71926.1| RNA polymerase II [Eulaema sororia]
          Length = 280

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 261/326 (80%), Positives = 272/326 (83%), Gaps = 46/326 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG     
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG----- 115

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
                                                    HSIGIGDTIADPQTYLEIQ
Sbjct: 116 -----------------------------------------HSIGIGDTIADPQTYLEIQ 134

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
            AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 135 KAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINIS VIACVGQQN EGKRIPFGFRKRTLPHFIK DYGPESRGFV
Sbjct: 195 NNLKAMVVSGSKGSNINISHVIACVGQQNAEGKRIPFGFRKRTLPHFIKXDYGPESRGFV 254

Query: 385 ENSYLAGLTPSEFFFHAMGGREGLID 410
           ENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 255 ENSYLAGLTPSEFYFHAMGGREGLID 280



 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/68 (92%), Positives = 65/68 (95%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            + VIACVGQQN EGKRIPFGFRKRTLPHFIK DYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 213  SHVIACVGQQNAEGKRIPFGFRKRTLPHFIKXDYGPESRGFVENSYLAGLTPSEFYFHAM 272

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 273  GGREGLID 280


>gi|62911601|gb|AAY21431.1| RNA polymerase II [Goniocolletes fimbriatinus]
 gi|62911607|gb|AAY21434.1| RNA polymerase II [Goniocolletes perfasciatus]
 gi|62911705|gb|AAY21483.1| RNA polymerase II [Dieunomia heteropoda]
 gi|62911707|gb|AAY21484.1| RNA polymerase II [Dieunomia nevadensis]
 gi|62911749|gb|AAY21505.1| RNA polymerase II [Sphecodes pecosensis]
 gi|62911753|gb|AAY21507.1| RNA polymerase II [Patellapis (Zonalictus) sp. BND-2006]
 gi|71480572|gb|AAZ32211.1| RNA polymerase II large subunit [Lipotriches patellifera]
          Length = 296

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 261/325 (80%), Positives = 273/325 (84%), Gaps = 46/325 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEP+PG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPSPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPESRGFVENSYLAGLTPSE 396
           IKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 272 IKDDYGPESRGFVENSYLAGLTPSE 296



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/54 (98%), Positives = 54/54 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 1062
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 296


>gi|62911755|gb|AAY21508.1| RNA polymerase II [Pseudopanurgus fraterculus]
          Length = 296

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 261/325 (80%), Positives = 273/325 (84%), Gaps = 46/325 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEP+PG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPSPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFEN+VNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENRVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPESRGFVENSYLAGLTPSE 396
           IKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 272 IKDDYGPESRGFVENSYLAGLTPSE 296



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/54 (98%), Positives = 54/54 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 1062
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 296


>gi|194460288|gb|ACF71819.1| RNA polymerase II [Euglossa paisa]
          Length = 280

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 262/325 (80%), Positives = 273/325 (84%), Gaps = 46/325 (14%)

Query: 86  DGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVV 145
           DG MPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+V
Sbjct: 2   DGXMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMV 61

Query: 146 EHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIG 205
           EHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG      
Sbjct: 62  EHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG------ 115

Query: 206 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQM 265
                                                   HSIGIGDTIADPQTYLEIQ 
Sbjct: 116 ----------------------------------------HSIGIGDTIADPQTYLEIQK 135

Query: 266 AIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 325
           AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN
Sbjct: 136 AIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 195

Query: 326 NLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 385
           NLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE
Sbjct: 196 NLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 255

Query: 386 NSYLAGLTPSEFFFHAMGGREGLID 410
           NSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 256 NSYLAGLTPSEFYFHAMGGREGLID 280



 Score =  147 bits (372), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 272

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 273  GGREGLID 280


>gi|62911553|gb|AAY21407.1| RNA polymerase II [Centris rhodopus]
          Length = 296

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 261/325 (80%), Positives = 273/325 (84%), Gaps = 46/325 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPESRGFVENSYLAGLTPSE 396
           IKDDYGPESRGFVENSYLAGLTPS+
Sbjct: 272 IKDDYGPESRGFVENSYLAGLTPSD 296



 Score =  117 bits (292), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 52/54 (96%), Positives = 54/54 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 1062
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPS+
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSD 296


>gi|62911637|gb|AAY21449.1| RNA polymerase II [Oxybelus abdominalis]
          Length = 296

 Score =  538 bits (1387), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 261/325 (80%), Positives = 272/325 (83%), Gaps = 46/325 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPESRGFVENSYLAGLTPSE 396
           IKDDYGPESRGFVENSY AGLTPSE
Sbjct: 272 IKDDYGPESRGFVENSYXAGLTPSE 296



 Score =  116 bits (291), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/54 (96%), Positives = 53/54 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 1062
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY AGLTPSE
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYXAGLTPSE 296


>gi|194460365|gb|ACF71857.1| RNA polymerase II [Euglossa heterosticta]
          Length = 279

 Score =  537 bits (1384), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 261/325 (80%), Positives = 273/325 (84%), Gaps = 46/325 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG     
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG----- 115

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
                                                    HSIGIGDTIADPQTYLEIQ
Sbjct: 116 -----------------------------------------HSIGIGDTIADPQTYLEIQ 134

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
            AIKKAKE+VIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 135 KAIKKAKEEVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYG ESRGFV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGFESRGFV 254

Query: 385 ENSYLAGLTPSEFFFHAMGGREGLI 409
           ENSYLAGLTPSEF+FHAMGGREGLI
Sbjct: 255 ENSYLAGLTPSEFYFHAMGGREGLI 279



 Score =  140 bits (354), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 64/67 (95%), Positives = 66/67 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYG ESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGFESRGFVENSYLAGLTPSEFYFHAM 272

Query: 1069 GGREGLI 1075
            GGREGLI
Sbjct: 273  GGREGLI 279


>gi|194460500|gb|ACF71924.1| RNA polymerase II [Euglossa tridentata]
          Length = 280

 Score =  537 bits (1383), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 261/325 (80%), Positives = 273/325 (84%), Gaps = 46/325 (14%)

Query: 86  DGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVV 145
           +GK PQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+V
Sbjct: 2   NGKXPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMV 61

Query: 146 EHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIG 205
           EHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG      
Sbjct: 62  EHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG------ 115

Query: 206 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQM 265
                                                   HSIGIGDTIADPQTYLEIQ 
Sbjct: 116 ----------------------------------------HSIGIGDTIADPQTYLEIQK 135

Query: 266 AIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 325
           AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN
Sbjct: 136 AIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 195

Query: 326 NLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 385
           NLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE
Sbjct: 196 NLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 255

Query: 386 NSYLAGLTPSEFFFHAMGGREGLID 410
           NSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 256 NSYLAGLTPSEFYFHAMGGREGLID 280



 Score =  147 bits (372), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 272

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 273  GGREGLID 280


>gi|194460345|gb|ACF71847.1| RNA polymerase II [Euglossa villosiventris]
 gi|194460496|gb|ACF71922.1| RNA polymerase II [Euglossa bidentata]
          Length = 277

 Score =  537 bits (1383), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 261/323 (80%), Positives = 272/323 (84%), Gaps = 46/323 (14%)

Query: 88  KMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEH 147
           KMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEH
Sbjct: 1   KMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEH 60

Query: 148 GSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDT 207
           G L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG        
Sbjct: 61  GELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG-------- 112

Query: 208 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAI 267
                                                 HSIGIGDTIADPQTYLEIQ AI
Sbjct: 113 --------------------------------------HSIGIGDTIADPQTYLEIQKAI 134

Query: 268 KKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNL 327
           KKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNL
Sbjct: 135 KKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNL 194

Query: 328 KAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS 387
           KAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS
Sbjct: 195 KAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS 254

Query: 388 YLAGLTPSEFFFHAMGGREGLID 410
           YLAGLTPSEF+FHAMGGREGLID
Sbjct: 255 YLAGLTPSEFYFHAMGGREGLID 277



 Score =  147 bits (372), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 210  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 269

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 270  GGREGLID 277


>gi|38232389|gb|AAR15030.1| RNA polymerase II largest subunit [Trachyiulus nordquisti]
          Length = 370

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 275/397 (69%), Positives = 302/397 (76%), Gaps = 56/397 (14%)

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+ GILCKK+LGTS+GSLLHI  LELG EV G FY +IQTV
Sbjct: 1   GPYKWISPGDTKVLVEHGELICGILCKKTLGTSAGSLLHIVMLELGWEVAGLFYSHIQTV 60

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNNWLLLEG                                              H+IGI
Sbjct: 61  VNNWLLLEG----------------------------------------------HTIGI 74

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIAD QTY +IQ +IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 75  GDTIADQQTYTDIQNSIKKAKQDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDAR 134

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSA+KSL+EYNN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 135 DKTGGSAQKSLSEYNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPH 194

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 195 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 254

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMV YD T+RNSVGQLIQLRYGEDGL G AVE Q + T+  S+K FE K+RFD +NER 
Sbjct: 255 SVMVTYDGTIRNSVGQLIQLRYGEDGLDGGAVEFQNLPTLKPSNKAFEKKFRFDVTNER- 313

Query: 491 TLRNVSSLRRVVNS---KPLLIGCWKLTSVEKEMNTV 524
                  LRR+ N    K L+     +  +EKE  T+
Sbjct: 314 ------QLRRIFNEDIVKELIGSAHAVAELEKEWETL 344



 Score =  172 bits (436), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 92/173 (53%), Positives = 112/173 (64%), Gaps = 11/173 (6%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 167  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 226

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V     + + + Y     D
Sbjct: 227  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTIRNSV----GQLIQLRYGEDGLD 282

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLV 1181
               +    L       +  +KK   +  +E+        L  IFN+D  ++L+
Sbjct: 283  GGAVEFQNLPTLKPSNKAFEKKFRFDVTNER-------QLRRIFNEDIVKELI 328



 Score =  164 bits (414), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 88/161 (54%), Positives = 102/161 (63%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD T+RNSVGQLIQLRYGEDGL G AVE Q + T+  S+K FE
Sbjct: 243 GYIQRRLIKAMESVMVTYDGTIRNSVGQLIQLRYGEDGLDGGAVEFQNLPTLKPSNKAFE 302

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD +NERQLRRIFNED+++EL+GS   ++ELEKE                      
Sbjct: 303 KKFRFDVTNERQLRRIFNEDIVKELIGSAHAVAELEKE---------------------- 340

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                        WE L  DRE LR IF  G++ VVLP NL
Sbjct: 341 -------------WETLKRDRELLRHIFPKGDNKVVLPGNL 368


>gi|194460353|gb|ACF71851.1| RNA polymerase II [Euglossa crassipunctata]
 gi|194460410|gb|ACF71879.1| RNA polymerase II [Euglossa tridentata]
          Length = 276

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 260/322 (80%), Positives = 271/322 (84%), Gaps = 46/322 (14%)

Query: 89  MPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHG 148
           MPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG
Sbjct: 1   MPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHG 60

Query: 149 SLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTI 208
            L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG         
Sbjct: 61  ELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG--------- 111

Query: 209 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIK 268
                                                HSIGIGDTIADPQTYLEIQ AIK
Sbjct: 112 -------------------------------------HSIGIGDTIADPQTYLEIQKAIK 134

Query: 269 KAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLK 328
           KAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLK
Sbjct: 135 KAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLK 194

Query: 329 AMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY 388
           AMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY
Sbjct: 195 AMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY 254

Query: 389 LAGLTPSEFFFHAMGGREGLID 410
           LAGLTPSEF+FHAMGGREGLID
Sbjct: 255 LAGLTPSEFYFHAMGGREGLID 276



 Score =  147 bits (372), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 209  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 268

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 269  GGREGLID 276


>gi|194460315|gb|ACF71832.1| RNA polymerase II [Euglossa parvula]
          Length = 277

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 260/322 (80%), Positives = 271/322 (84%), Gaps = 46/322 (14%)

Query: 89  MPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHG 148
           MPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG
Sbjct: 2   MPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHG 61

Query: 149 SLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTI 208
            L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG         
Sbjct: 62  ELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG--------- 112

Query: 209 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIK 268
                                                HSIGIGDTIADPQTYLEIQ AIK
Sbjct: 113 -------------------------------------HSIGIGDTIADPQTYLEIQKAIK 135

Query: 269 KAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLK 328
           KAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLK
Sbjct: 136 KAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLK 195

Query: 329 AMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY 388
           AMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY
Sbjct: 196 AMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY 255

Query: 389 LAGLTPSEFFFHAMGGREGLID 410
           LAGLTPSEF+FHAMGGREGLID
Sbjct: 256 LAGLTPSEFYFHAMGGREGLID 277



 Score =  147 bits (372), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 210  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 269

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 270  GGREGLID 277


>gi|158427009|gb|ABW38112.1| RNA polymerase II [Euglossa imperialis]
 gi|158427011|gb|ABW38113.1| RNA polymerase II [Exaerete frontalis]
 gi|158427013|gb|ABW38114.1| RNA polymerase II [Eufriesea pulchra]
 gi|158427029|gb|ABW38122.1| RNA polymerase II [Apis florea]
 gi|158427031|gb|ABW38123.1| RNA polymerase II [Apis dorsata]
 gi|158427033|gb|ABW38124.1| RNA polymerase II [Apis cerana]
          Length = 282

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 260/323 (80%), Positives = 271/323 (83%), Gaps = 46/323 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 6   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 65

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 66  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 125

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 126 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 179

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 180 ----------------------------------------NTLRQTFENQVNRILNDARD 199

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 200 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 259

Query: 372 IKDDYGPESRGFVENSYLAGLTP 394
           IKDDYGPESRGFVENSYLAGLTP
Sbjct: 260 IKDDYGPESRGFVENSYLAGLTP 282



 Score =  114 bits (286), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/52 (98%), Positives = 52/52 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 1060
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP
Sbjct: 231  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 282


>gi|158427021|gb|ABW38118.1| RNA polymerase II [Trigona fuscipennis]
 gi|158427023|gb|ABW38119.1| RNA polymerase II [Cephalotrigona capitata]
 gi|158427025|gb|ABW38120.1| RNA polymerase II [Meliponula bocandei]
 gi|158427027|gb|ABW38121.1| RNA polymerase II [Scaura latitarsis]
          Length = 282

 Score =  534 bits (1376), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 259/323 (80%), Positives = 271/323 (83%), Gaps = 46/323 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 6   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 65

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 66  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 125

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 126 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 179

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 180 ----------------------------------------NTLRQTFENQVNRILNDARD 199

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 200 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 259

Query: 372 IKDDYGPESRGFVENSYLAGLTP 394
           IKDDYGPESRGFVENSYLAGLTP
Sbjct: 260 IKDDYGPESRGFVENSYLAGLTP 282



 Score =  114 bits (286), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/52 (98%), Positives = 52/52 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 1060
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP
Sbjct: 231  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 282


>gi|194460472|gb|ACF71910.1| RNA polymerase II [Euglossa hemichlora]
          Length = 277

 Score =  534 bits (1376), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 260/323 (80%), Positives = 271/323 (83%), Gaps = 46/323 (14%)

Query: 88  KMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEH 147
           K PQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEH
Sbjct: 1   KCPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEH 60

Query: 148 GSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDT 207
           G L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG        
Sbjct: 61  GELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG-------- 112

Query: 208 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAI 267
                                                 HSIGIGDTIADPQTYLEIQ AI
Sbjct: 113 --------------------------------------HSIGIGDTIADPQTYLEIQKAI 134

Query: 268 KKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNL 327
           KKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNL
Sbjct: 135 KKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNL 194

Query: 328 KAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS 387
           KAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS
Sbjct: 195 KAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS 254

Query: 388 YLAGLTPSEFFFHAMGGREGLID 410
           YLAGLTPSEF+FHAMGGREGLID
Sbjct: 255 YLAGLTPSEFYFHAMGGREGLID 277



 Score =  147 bits (372), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 210  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 269

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 270  GGREGLID 277


>gi|194460466|gb|ACF71907.1| RNA polymerase II [Eufriesea magrettii]
          Length = 277

 Score =  534 bits (1375), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 259/322 (80%), Positives = 270/322 (83%), Gaps = 46/322 (14%)

Query: 86  DGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVV 145
           DGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+V
Sbjct: 2   DGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMV 61

Query: 146 EHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIG 205
           EHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG      
Sbjct: 62  EHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG------ 115

Query: 206 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQM 265
                                                   HSIGIGDTIADPQTYLEIQ 
Sbjct: 116 ----------------------------------------HSIGIGDTIADPQTYLEIQK 135

Query: 266 AIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 325
           AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRI NDARDKTGGSAKKSLTEYN
Sbjct: 136 AIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRIXNDARDKTGGSAKKSLTEYN 195

Query: 326 NLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 385
           NLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE
Sbjct: 196 NLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 255

Query: 386 NSYLAGLTPSEFFFHAMGGREG 407
           NSYLAGLTPSEF+FHAMGGREG
Sbjct: 256 NSYLAGLTPSEFYFHAMGGREG 277



 Score =  142 bits (357), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/65 (96%), Positives = 65/65 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 272

Query: 1069 GGREG 1073
            GGREG
Sbjct: 273  GGREG 277


>gi|194460292|gb|ACF71821.1| RNA polymerase II [Eufriesea sp. EU103]
          Length = 280

 Score =  533 bits (1373), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 258/326 (79%), Positives = 270/326 (82%), Gaps = 46/326 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           W GKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WKGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWL+LEG     
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLVLEG----- 115

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
                                                    HSIGIGDTIADPQTYLEIQ
Sbjct: 116 -----------------------------------------HSIGIGDTIADPQTYLEIQ 134

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
            A  K  EDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 135 KAXXKXXEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 254

Query: 385 ENSYLAGLTPSEFFFHAMGGREGLID 410
           ENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 255 ENSYLAGLTPSEFYFHAMGGREGLID 280



 Score =  147 bits (372), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 272

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 273  GGREGLID 280


>gi|194460458|gb|ACF71903.1| RNA polymerase II [Euglossa crininota]
          Length = 275

 Score =  533 bits (1373), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 259/321 (80%), Positives = 270/321 (84%), Gaps = 46/321 (14%)

Query: 90  PQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGS 149
           PQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG 
Sbjct: 1   PQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGE 60

Query: 150 LLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIA 209
           L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG          
Sbjct: 61  LVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG---------- 110

Query: 210 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKK 269
                                               HSIGIGDTIADPQTYLEIQ AIKK
Sbjct: 111 ------------------------------------HSIGIGDTIADPQTYLEIQKAIKK 134

Query: 270 AKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKA 329
           AKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKA
Sbjct: 135 AKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKA 194

Query: 330 MVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 389
           MVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL
Sbjct: 195 MVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 254

Query: 390 AGLTPSEFFFHAMGGREGLID 410
           AGLTPSEF+FHAMGGREGLID
Sbjct: 255 AGLTPSEFYFHAMGGREGLID 275



 Score =  147 bits (372), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 208  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 267

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 268  GGREGLID 275


>gi|38232365|gb|AAR15018.1| RNA polymerase II largest subunit [Rhinotus purpureus]
          Length = 370

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 278/393 (70%), Positives = 301/393 (76%), Gaps = 56/393 (14%)

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+ GILCKK+LGTS+GSLLHI  LELG EV G FY +IQ V
Sbjct: 1   GPYKWISPGDTKVLVEHGELICGILCKKTLGTSAGSLLHIVMLELGFEVAGHFYWHIQMV 60

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNNWLLLEG                                              H+IGI
Sbjct: 61  VNNWLLLEG----------------------------------------------HTIGI 74

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIADPQTY+ IQ +IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 75  GDTIADPQTYVVIQNSIKKAKQDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDAR 134

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSA+KSL+E+NN KAMVVAGSKGS INISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 135 DKTGGSAQKSLSEFNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPH 194

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 195 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 254

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMV YD T+RNSVGQLIQLRYGEDGL G AVE Q + T+  S K FE K+ FD SNER 
Sbjct: 255 SVMVTYDGTIRNSVGQLIQLRYGEDGLDGGAVEFQNLPTLKPSDKVFEKKFHFDVSNER- 313

Query: 491 TLRNVSSLRRVVNSKPL--LIGCWKLTS-VEKE 520
                  LRRV N   +  LIG  ++ S +EKE
Sbjct: 314 ------QLRRVFNEDIVKELIGSAQVVSELEKE 340



 Score =  173 bits (438), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/228 (44%), Positives = 136/228 (59%), Gaps = 17/228 (7%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 156  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 215

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEF 1117
            LTPSEFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N+V     + 
Sbjct: 216  LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTIRNSV----GQL 271

Query: 1118 VNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNA 1177
            + + Y     D   +    L       ++ +KK   +  +E+        L  +FN+D  
Sbjct: 272  IQLRYGEDGLDGGAVEFQNLPTLKPSDKVFEKKFHFDVSNER-------QLRRVFNEDIV 324

Query: 1178 EKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQG 1225
            ++L+   +++    S+++ E + + +  D   LR I     S + L G
Sbjct: 325  KELIGSAQVV----SELEKEWEYLKR--DRQLLRSIFPKGDSKVALPG 366



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 88/161 (54%), Positives = 100/161 (62%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD T+RNSVGQLIQLRYGEDGL G AVE Q + T+  S K FE
Sbjct: 243 GYIQRRLIKAMESVMVTYDGTIRNSVGQLIQLRYGEDGLDGGAVEFQNLPTLKPSDKVFE 302

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+ FD SNERQLRR+FNED+++EL+GS  V+SELEKE                      
Sbjct: 303 KKFHFDVSNERQLRRVFNEDIVKELIGSAQVVSELEKE---------------------- 340

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                        WE L  DR+ LR IF  G+S V LP NL
Sbjct: 341 -------------WEYLKRDRQLLRSIFPKGDSKVALPGNL 368


>gi|194460375|gb|ACF71862.1| RNA polymerase II [Eufriesea pulchra]
          Length = 276

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 258/322 (80%), Positives = 270/322 (83%), Gaps = 46/322 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGI
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYG ESRGFV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGXESRGFV 254

Query: 385 ENSYLAGLTPSEFFFHAMGGRE 406
           ENSYLAGLTPSEF+FHA+GGRE
Sbjct: 255 ENSYLAGLTPSEFYFHAVGGRE 276



 Score =  134 bits (338), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/64 (93%), Positives = 63/64 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYG ESRGFVENSYLAGLTPSEF+FHA+
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGXESRGFVENSYLAGLTPSEFYFHAV 272

Query: 1069 GGRE 1072
            GGRE
Sbjct: 273  GGRE 276


>gi|194245562|gb|ACF35391.1| RNA polymerase II large subunit [Bembidion inaequale]
          Length = 453

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 267/341 (78%), Positives = 277/341 (81%), Gaps = 53/341 (15%)

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHICFLELGHEVCGRFYGNIQTV+NNWLLLEG                       
Sbjct: 1   SAGSLLHICFLELGHEVCGRFYGNIQTVINNWLLLEG----------------------- 37

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTY+EIQ AIKKAKEDVIEVIQKAH
Sbjct: 38  -----------------------HSIGIGDTIADPQTYVEIQKAIKKAKEDVIEVIQKAH 74

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 75  NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 134

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 135 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 194

Query: 403 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAV 462
           GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE V
Sbjct: 195 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMV 254

Query: 463 EHQRIDTVALSHKKFEDKYRFDPSNERPTLRNVSSLRRVVN 503
           E Q + TV LS+K FE K+RFDPSNER        LRR+ N
Sbjct: 255 EFQTLPTVKLSNKAFEKKFRFDPSNER-------YLRRIFN 288



 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/170 (62%), Positives = 120/170 (70%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 211 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKLSNKAFE 270

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFDPSNER LRRIFNED++++LMGSGDVISELE+E      W+QL R          
Sbjct: 271 KKFRFDPSNERYLRRIFNEDIIKQLMGSGDVISELERE------WEQLSR---------- 314

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                              DREALR+IF SGES VVLPCNL  +I+ +Q+
Sbjct: 315 -------------------DREALRQIFPSGESKVVLPCNLQRMIWNVQK 345



 Score =  171 bits (432), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 135  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 194

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N+V
Sbjct: 195  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 236



 Score =  107 bits (268), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/58 (84%), Positives = 55/58 (94%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ 1010
            VAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ
Sbjct: 376  VAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQ 433


>gi|194460307|gb|ACF71828.1| RNA polymerase II [Eufriesea lucida]
          Length = 274

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 258/320 (80%), Positives = 269/320 (84%), Gaps = 46/320 (14%)

Query: 86  DGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVV 145
           DGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+V
Sbjct: 1   DGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMV 60

Query: 146 EHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIG 205
           EHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG      
Sbjct: 61  EHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG------ 114

Query: 206 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQM 265
                                                   HSIGIGDTIADPQTYLEIQ 
Sbjct: 115 ----------------------------------------HSIGIGDTIADPQTYLEIQK 134

Query: 266 AIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 325
           AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN
Sbjct: 135 AIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 194

Query: 326 NLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 385
           NLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE
Sbjct: 195 NLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 254

Query: 386 NSYLAGLTPSEFFFHAMGGR 405
           NSYLAGLTPSEF+FHAMGGR
Sbjct: 255 NSYLAGLTPSEFYFHAMGGR 274



 Score =  138 bits (347), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 212  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 271

Query: 1069 GGR 1071
            GGR
Sbjct: 272  GGR 274


>gi|158427015|gb|ABW38115.1| RNA polymerase II [Bombus ardens]
 gi|158427017|gb|ABW38116.1| RNA polymerase II [Bombus diversus]
 gi|158427019|gb|ABW38117.1| RNA polymerase II [Bombus mendax]
          Length = 282

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 258/323 (79%), Positives = 271/323 (83%), Gaps = 46/323 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP W+GKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 6   KEQMMNILMFLPSWNGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 65

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 66  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 125

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 126 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 179

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 180 ----------------------------------------NTLRQTFENQVNRILNDARD 199

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 200 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 259

Query: 372 IKDDYGPESRGFVENSYLAGLTP 394
           IKDDYGPESRGFVENSYLAGLTP
Sbjct: 260 IKDDYGPESRGFVENSYLAGLTP 282



 Score =  114 bits (286), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/52 (98%), Positives = 52/52 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 1060
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP
Sbjct: 231  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 282


>gi|259016126|gb|ACV89343.1| RNA polymerase II 215kD subunit [Boreus brumalis]
          Length = 289

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 257/323 (79%), Positives = 271/323 (83%), Gaps = 46/323 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MNILMFLP W+GKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 13  KEQIMNILMFLPTWNGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 72

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHE+ GRFYGNIQTV+
Sbjct: 73  PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHEIAGRFYGNIQTVI 132

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTY+EIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 133 NNWLLLEGHSIGIGDTIADPQTYMEIQRAIKKAKEDVIEVIQKAHNMELEPTPG------ 186

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 187 ----------------------------------------NTLRQTFENQVNRILNDARD 206

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 207 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 266

Query: 372 IKDDYGPESRGFVENSYLAGLTP 394
           IKDDYGPESRGFVENSYLAGLTP
Sbjct: 267 IKDDYGPESRGFVENSYLAGLTP 289



 Score =  114 bits (286), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/52 (98%), Positives = 52/52 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 1060
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP
Sbjct: 238  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 289


>gi|194460347|gb|ACF71848.1| RNA polymerase II [Euglossa igniventris]
          Length = 274

 Score =  531 bits (1369), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 258/320 (80%), Positives = 269/320 (84%), Gaps = 46/320 (14%)

Query: 89  MPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHG 148
           MPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG
Sbjct: 1   MPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHG 60

Query: 149 SLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTI 208
            L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG         
Sbjct: 61  ELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG--------- 111

Query: 209 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIK 268
                                                HSIGIGDTIADPQTYLEIQ AIK
Sbjct: 112 -------------------------------------HSIGIGDTIADPQTYLEIQKAIK 134

Query: 269 KAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLK 328
           KAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLK
Sbjct: 135 KAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLK 194

Query: 329 AMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY 388
           AMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY
Sbjct: 195 AMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY 254

Query: 389 LAGLTPSEFFFHAMGGREGL 408
           LAGLTPSEF+FHAMGGREGL
Sbjct: 255 LAGLTPSEFYFHAMGGREGL 274



 Score =  144 bits (362), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 64/66 (96%), Positives = 66/66 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 209  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 268

Query: 1069 GGREGL 1074
            GGREGL
Sbjct: 269  GGREGL 274


>gi|259016104|gb|ACV89332.1| RNA polymerase II 215kD subunit [Halictophagidae sp. BMW-2009]
          Length = 290

 Score =  531 bits (1368), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 255/327 (77%), Positives = 273/327 (83%), Gaps = 46/327 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MNILMFLPIWDGKMP+P I+KPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPDDED G
Sbjct: 10  KEQLMNILMFLPIWDGKMPKPAIIKPKPLWTGKQIFSLIIPGNVNLIRTHSTHPDDEDEG 69

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MG+LCKK+LGTS+GSLLHIC+LELGH+VCGRFYGNIQTVV
Sbjct: 70  PYRWISPGDTKVMVEHGELVMGMLCKKTLGTSAGSLLHICYLELGHDVCGRFYGNIQTVV 129

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EGHSIGIGDTIADPQTY+EIQ AIKKAKEDVI+VIQKAHNM+LEPTPG      
Sbjct: 130 NNWLLYEGHSIGIGDTIADPQTYVEIQRAIKKAKEDVIQVIQKAHNMELEPTPG------ 183

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 184 ----------------------------------------NTLRQTFENQVNRILNDARD 203

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SAKKSLTEYNNLK MVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 204 KTGASAKKSLTEYNNLKTMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 263

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFF 398
           IKDDYGPESRGFVENSYLAGLTPSEF+
Sbjct: 264 IKDDYGPESRGFVENSYLAGLTPSEFY 290



 Score =  122 bits (305), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/56 (96%), Positives = 56/56 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 1064
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+
Sbjct: 235  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFY 290


>gi|194460486|gb|ACF71917.1| RNA polymerase II [Exaerete throcanterica]
          Length = 274

 Score =  530 bits (1366), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 258/320 (80%), Positives = 269/320 (84%), Gaps = 46/320 (14%)

Query: 91  QPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSL 150
           QPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L
Sbjct: 1   QPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGEL 60

Query: 151 LMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIAD 210
           +MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG           
Sbjct: 61  VMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG----------- 109

Query: 211 PQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKA 270
                                              HSIGIGDTIADPQTYLEIQ AIKKA
Sbjct: 110 -----------------------------------HSIGIGDTIADPQTYLEIQKAIKKA 134

Query: 271 KEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAM 330
           KEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAM
Sbjct: 135 KEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAM 194

Query: 331 VVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLA 390
           VV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLA
Sbjct: 195 VVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLA 254

Query: 391 GLTPSEFFFHAMGGREGLID 410
           GLTPSEF+FHAMGGREGLID
Sbjct: 255 GLTPSEFYFHAMGGREGLID 274



 Score =  147 bits (372), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 207  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 266

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 267  GGREGLID 274


>gi|313225875|emb|CBY21018.1| unnamed protein product [Oikopleura dioica]
          Length = 928

 Score =  530 bits (1365), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 289/528 (54%), Positives = 358/528 (67%), Gaps = 70/528 (13%)

Query: 959  LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA-----QVIA 1013
            LS +A  NAT+LF   +RST+C+K V E Y L+S+AF++++GEIE++F  A     ++I 
Sbjct: 80   LSIEAQNNATMLFNIHMRSTMCSKRVIEEYYLNSQAFDYIIGEIESKFNAAITHPGEMIG 139

Query: 1014 CVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLA 1056
             +  Q+                 V  K +  G  +  L   I     P+           
Sbjct: 140  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LNELINITKKPK----------- 186

Query: 1057 GLTPSEFFFHAMGGREGLIDTAVKTAETV-NVLVFLFQ-----VTANTAIYYDPDPQNTV 1110
              TPS   F        L+    + AE   +VL  L       VTANTAI+YDP P N+V
Sbjct: 187  --TPSVTIF--------LLGENARDAEMCKDVLCRLEHTTMKTVTANTAIFYDPHPMNSV 236

Query: 1111 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNC 1170
            I EDQ+FV+VYYEMPDFD +RISPWLLRIELDRK+MTDKKLTME ISEKIN GFGDDLNC
Sbjct: 237  IEEDQDFVSVYYEMPDFDVSRISPWLLRIELDRKKMTDKKLTMEQISEKINNGFGDDLNC 296

Query: 1171 IFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIG 1230
            IFNDDNA+KLVLRIRIMN+D    +DE+DA DKMEDD FLR IEAN+LSDMTLQGIE+I 
Sbjct: 297  IFNDDNADKLVLRIRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGIESIA 356

Query: 1231 KVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEI 1290
            +VYM+LP+ + KK+I I + GEF +  DW+LETDGT+LMKVLS+RD+D VRT SNDICE 
Sbjct: 357  RVYMNLPKEEEKKKIFINKEGEFASQQDWILETDGTALMKVLSQRDIDTVRTSSNDICEC 416

Query: 1291 FQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTG 1350
            F++LG+EAVRK +E+E+N V+ F G YVNYRH+++LCDVMT++GHLMAITRHG+NRQD G
Sbjct: 417  FEILGVEAVRKCLEREINNVISFDGSYVNYRHMSMLCDVMTSRGHLMAITRHGVNRQDVG 476

Query: 1351 ALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIE 1410
            ALMRCSFEETVD+LM AAA AE DP+ GVSENI++GQ    GTGCF L+LD EKCKD +E
Sbjct: 477  ALMRCSFEETVDILMTAAAAAEVDPLTGVSENIMLGQQIPGGTGCFQLVLDVEKCKDAME 536

Query: 1411 IPLATGMMG---------GPAGMFFGS------AATPSSIPGPPAWYP 1443
            +P   G             P+G F  S      +ATPS +     W P
Sbjct: 537  VPGNGGGNFMGGMFGGAMSPSGSFTPSMPWADGSATPSGV----GWTP 580



 Score =  194 bits (492), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 105/192 (54%), Positives = 131/192 (68%), Gaps = 18/192 (9%)

Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
           +I+ V +VRK +E+E+N V+ F G YVNYRH+++LCDVMT++GHLMAITRHG+NRQD GA
Sbjct: 418 EILGVEAVRKCLEREINNVISFDGSYVNYRHMSMLCDVMTSRGHLMAITRHGVNRQDVGA 477

Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI 894
           LMRCSFEETVD+LM AAA AE DP+ GVSENI++GQ    GTGCF L+LD EKCKD +E+
Sbjct: 478 LMRCSFEETVDILMTAAAAAEVDPLTGVSENIMLGQQIPGGTGCFQLVLDVEKCKDAMEV 537

Query: 895 PLATGMMGGPAGMFFGSAATPS-SMSPQMTPWAQSTPAYNAL----MSPGAAMTPGG--- 946
           P   G      G  FG A +PS S +P M PWA  +   + +     +P    TPGG   
Sbjct: 538 PGNGGGNF--MGGMFGGAMSPSGSFTPSM-PWADGSATPSGVGWTPYTPRGGATPGGMFS 594

Query: 947 -------PGFSP 951
                  PGFSP
Sbjct: 595 PAQSEDNPGFSP 606



 Score =  181 bits (458), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 98/152 (64%), Positives = 109/152 (71%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            +  VTANTAI+YDP P N+VI EDQ+FV+VYYEMPDFD +RISPWLLRIELDRK+MTDKK
Sbjct: 217  MKTVTANTAIFYDPHPMNSVIEEDQDFVSVYYEMPDFDVSRISPWLLRIELDRKKMTDKK 276

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME ISEKIN GFG                            DDLNCIFNDDNA+KLVL
Sbjct: 277  LTMEQISEKINNGFG----------------------------DDLNCIFNDDNADKLVL 308

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN+D    +DE+DA DKMEDD FLR IE
Sbjct: 309  RIRIMNNDQKDAEDEDDAPDKMEDDTFLRYIE 340



 Score =  130 bits (326), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 79/107 (73%), Gaps = 10/107 (9%)

Query: 493 RNVSSLRRVVNSKPLLIGCWKLTSVE-------KEMNTVLQFYGLYVNYRHLALLCDVMT 545
           R++ ++R   N    +  C+++  VE       +E+N V+ F G YVNYRH+++LCDVMT
Sbjct: 401 RDIDTVRTSSND---ICECFEILGVEAVRKCLEREINNVISFDGSYVNYRHMSMLCDVMT 457

Query: 546 AKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 592
           ++GHLMAITRHG+NRQD GALMRCSFEETVD+LM AAA AE DP+ G
Sbjct: 458 SRGHLMAITRHGVNRQDVGALMRCSFEETVDILMTAAAAAEVDPLTG 504



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 53/67 (79%), Gaps = 3/67 (4%)

Query: 402 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEA 461
           MGGREGLIDTAVKTAETGYIQRRL+KAMES +V YD TVR S   +IQ RYGEDGL   A
Sbjct: 1   MGGREGLIDTAVKTAETGYIQRRLVKAMESAVVRYDGTVRISNNNIIQFRYGEDGL---A 57

Query: 462 VEHQRID 468
             H ++D
Sbjct: 58  EIHSKVD 64



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRID 641
           GYIQRRL+KAMES +V YD TVR S   +IQ RYGEDGL   A  H ++D
Sbjct: 18  GYIQRRLVKAMESAVVRYDGTVRISNNNIIQFRYGEDGL---AEIHSKVD 64


>gi|194460331|gb|ACF71840.1| RNA polymerase II [Euglossa natesi]
          Length = 274

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 256/320 (80%), Positives = 268/320 (83%), Gaps = 46/320 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGT +GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGI
Sbjct: 61  VEHGELVMGILCKKTLGTXAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNV+GKRIPFGFRKRTLPHFIKDDYGPESRGFV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVKGKRIPFGFRKRTLPHFIKDDYGPESRGFV 254

Query: 385 ENSYLAGLTPSEFFFHAMGG 404
           ENSYLAGLTPSEF+FHAMGG
Sbjct: 255 ENSYLAGLTPSEFYFHAMGG 274



 Score =  134 bits (337), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/62 (95%), Positives = 62/62 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNV+GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 213  SQVIACVGQQNVKGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 272

Query: 1069 GG 1070
            GG
Sbjct: 273  GG 274


>gi|194460311|gb|ACF71830.1| RNA polymerase II [Euglossa perfulgens]
          Length = 276

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 256/322 (79%), Positives = 267/322 (82%), Gaps = 46/322 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGI
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRT PHF  DDYGPESRGFV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTXPHFXXDDYGPESRGFV 254

Query: 385 ENSYLAGLTPSEFFFHAMGGRE 406
           ENSYL GLTPSEF+FHAMGGRE
Sbjct: 255 ENSYLVGLTPSEFYFHAMGGRE 276



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 60/64 (93%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRT PHF  DDYGPESRGFVENSYL GLTPSEF+FHAM
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTXPHFXXDDYGPESRGFVENSYLVGLTPSEFYFHAM 272

Query: 1069 GGRE 1072
            GGRE
Sbjct: 273  GGRE 276


>gi|259016096|gb|ACV89328.1| RNA polymerase II 215kD subunit [Mengenilla sp. BMW-2009]
          Length = 291

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 258/323 (79%), Positives = 270/323 (83%), Gaps = 46/323 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLPIWDGK+P+P ILKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPDDED G
Sbjct: 15  KEQMMNILMFLPIWDGKIPKPAILKPKPLWTGKQIFSLIIPGNVNLIRTHSTHPDDEDEG 74

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC+LELGHEVCGRFYGNIQTVV
Sbjct: 75  PYCWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICYLELGHEVCGRFYGNIQTVV 134

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EGHSIGIGDTIADPQTYLEIQ AIKKAKEDVI+VIQKAHNM+LEPTPG      
Sbjct: 135 NNWLLYEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIQVIQKAHNMELEPTPG------ 188

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 189 ----------------------------------------NTLRQTFENQVNRILNDARD 208

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 209 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 268

Query: 372 IKDDYGPESRGFVENSYLAGLTP 394
           IKDDYGPESRGFVENSYLAGLTP
Sbjct: 269 IKDDYGPESRGFVENSYLAGLTP 291



 Score =  114 bits (286), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/52 (98%), Positives = 52/52 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 1060
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP
Sbjct: 240  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 291


>gi|71480584|gb|AAZ32217.1| RNA polymerase II large subunit [Apis mellifera]
          Length = 296

 Score =  528 bits (1360), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 258/325 (79%), Positives = 268/325 (82%), Gaps = 46/325 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+ SLIIPGNVNM RTHST P +ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQISSLIIPGNVNMIRTHSTXPXEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV 
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVX 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ  IKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKXIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPESRGFVENSYLAGLTPSE 396
           IKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 272 IKDDYGPESRGFVENSYLAGLTPSE 296



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/54 (98%), Positives = 54/54 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 1062
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 296


>gi|194460355|gb|ACF71852.1| RNA polymerase II [Euglossa asarophora]
          Length = 272

 Score =  528 bits (1359), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 256/318 (80%), Positives = 267/318 (83%), Gaps = 46/318 (14%)

Query: 90  PQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGS 149
           PQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG 
Sbjct: 1   PQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGE 60

Query: 150 LLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIA 209
           L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG          
Sbjct: 61  LVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG---------- 110

Query: 210 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKK 269
                                               HSIGIGDTIADPQTYLEIQ AIKK
Sbjct: 111 ------------------------------------HSIGIGDTIADPQTYLEIQKAIKK 134

Query: 270 AKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKA 329
           AKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKA
Sbjct: 135 AKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKA 194

Query: 330 MVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 389
           MVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL
Sbjct: 195 MVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 254

Query: 390 AGLTPSEFFFHAMGGREG 407
           AGLTPSEF+FHAMGGREG
Sbjct: 255 AGLTPSEFYFHAMGGREG 272



 Score =  142 bits (357), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/65 (96%), Positives = 65/65 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 208  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 267

Query: 1069 GGREG 1073
            GGREG
Sbjct: 268  GGREG 272


>gi|194460430|gb|ACF71889.1| RNA polymerase II [Eufriesea chalybaea]
          Length = 278

 Score =  527 bits (1358), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 256/322 (79%), Positives = 268/322 (83%), Gaps = 46/322 (14%)

Query: 87  GKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVE 146
           GKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VE
Sbjct: 3   GKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVE 62

Query: 147 HGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGD 206
           HG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG       
Sbjct: 63  HGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG------- 115

Query: 207 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMA 266
                                                  HSIGIGDTIADPQTYLEIQ A
Sbjct: 116 ---------------------------------------HSIGIGDTIADPQTYLEIQKA 136

Query: 267 IKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNN 326
           IKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNN
Sbjct: 137 IKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNN 196

Query: 327 LKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVEN 386
           LKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI +DYGPESRGFV N
Sbjct: 197 LKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFINEDYGPESRGFVXN 256

Query: 387 SYLAGLTPSEFFFHAMGGREGL 408
           SYLAGLTPSEF+FHAMGGRE L
Sbjct: 257 SYLAGLTPSEFYFHAMGGRESL 278



 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/66 (90%), Positives = 63/66 (95%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFI +DYGPESRGFV NSYLAGLTPSEF+FHAM
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFINEDYGPESRGFVXNSYLAGLTPSEFYFHAM 272

Query: 1069 GGREGL 1074
            GGRE L
Sbjct: 273  GGRESL 278


>gi|259016114|gb|ACV89337.1| RNA polymerase II 215kD subunit [Heliothis virescens]
          Length = 290

 Score =  527 bits (1357), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 256/327 (78%), Positives = 269/327 (82%), Gaps = 46/327 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WDGK+PQPCILKP+PLWTGKQ+F+LIIPG VNM RTHSTHPD+ED G
Sbjct: 10  KEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGPVNMIRTHSTHPDEEDDG 69

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKVVVEHG LLMGILCKKSLG S+GSLLHIC LELGHE  GRFYGNIQTV+
Sbjct: 70  PYKWISPGDTKVVVEHGELLMGILCKKSLGASAGSLLHICMLELGHETAGRFYGNIQTVI 129

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTY EIQ AI KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 130 NNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKEDVIEVIQKAHNMELEPTPG------ 183

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 184 ----------------------------------------NTLRQTFENQVNRILNDARD 203

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 204 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 263

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFF 398
           IKDDYGPESRGFVENSYLAGLTPSEF+
Sbjct: 264 IKDDYGPESRGFVENSYLAGLTPSEFY 290



 Score =  122 bits (305), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/56 (96%), Positives = 56/56 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 1064
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+
Sbjct: 235  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFY 290


>gi|194460406|gb|ACF71877.1| RNA polymerase II [Euglossa turbinifex]
          Length = 273

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 256/319 (80%), Positives = 267/319 (83%), Gaps = 46/319 (14%)

Query: 92  PCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLL 151
           PCILKPKPLWTGKQ+FS IIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+
Sbjct: 1   PCILKPKPLWTGKQIFSFIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELV 60

Query: 152 MGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADP 211
           MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG            
Sbjct: 61  MGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG------------ 108

Query: 212 QTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAK 271
                                             HSIGIGDTIADPQTYLEIQ AIKKAK
Sbjct: 109 ----------------------------------HSIGIGDTIADPQTYLEIQKAIKKAK 134

Query: 272 EDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMV 331
           EDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMV
Sbjct: 135 EDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMV 194

Query: 332 VAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 391
           V+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 195 VSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 254

Query: 392 LTPSEFFFHAMGGREGLID 410
           LTPSEF+FHAMGGREGLID
Sbjct: 255 LTPSEFYFHAMGGREGLID 273



 Score =  147 bits (372), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 206  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 265

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 266  GGREGLID 273


>gi|194460341|gb|ACF71845.1| RNA polymerase II [Euglossa flammea]
 gi|194460450|gb|ACF71899.1| RNA polymerase II [Euglossa erythrochlora]
          Length = 280

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 263/326 (80%), Positives = 275/326 (84%), Gaps = 46/326 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG     
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG----- 115

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
                                                    HSIGIGDTIADPQTYLEIQ
Sbjct: 116 -----------------------------------------HSIGIGDTIADPQTYLEIQ 134

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
            AIKKAK+DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 135 KAIKKAKKDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 254

Query: 385 ENSYLAGLTPSEFFFHAMGGREGLID 410
           ENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 255 ENSYLAGLTPSEFYFHAMGGREGLID 280



 Score =  147 bits (371), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 272

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 273  GGREGLID 280


>gi|194460286|gb|ACF71818.1| RNA polymerase II [Eufriesea rufocauda]
          Length = 280

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 256/325 (78%), Positives = 267/325 (82%), Gaps = 46/325 (14%)

Query: 86  DGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVV 145
           DG MPQPCI+KP    TGKQ+FSLIIPGNV M RTHSTHPD+ED GPY WISPGDTKV+V
Sbjct: 2   DGXMPQPCIVKPXXXXTGKQIFSLIIPGNVYMIRTHSTHPDEEDDGPYXWISPGDTKVMV 61

Query: 146 EHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIG 205
           EHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG      
Sbjct: 62  EHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG------ 115

Query: 206 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQM 265
                                                   HSIGIGDTIADPQTYLEIQ 
Sbjct: 116 ----------------------------------------HSIGIGDTIADPQTYLEIQK 135

Query: 266 AIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 325
           AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN
Sbjct: 136 AIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 195

Query: 326 NLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 385
           NLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE
Sbjct: 196 NLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 255

Query: 386 NSYLAGLTPSEFFFHAMGGREGLID 410
           NSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 256 NSYLAGLTPSEFYFHAMGGREGLID 280



 Score =  147 bits (372), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 272

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 273  GGREGLID 280


>gi|194460494|gb|ACF71921.1| RNA polymerase II [Euglossa retroviridis]
          Length = 270

 Score =  521 bits (1342), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 254/316 (80%), Positives = 264/316 (83%), Gaps = 46/316 (14%)

Query: 90  PQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGS 149
           PQPCILKPKPLWTGKQ FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG 
Sbjct: 1   PQPCILKPKPLWTGKQNFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGE 60

Query: 150 LLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIA 209
           L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG          
Sbjct: 61  LVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG---------- 110

Query: 210 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKK 269
                                               HSIGIGDTIADPQTYLEIQ AIKK
Sbjct: 111 ------------------------------------HSIGIGDTIADPQTYLEIQKAIKK 134

Query: 270 AKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKA 329
           AKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKA
Sbjct: 135 AKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKA 194

Query: 330 MVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 389
           MVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL
Sbjct: 195 MVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 254

Query: 390 AGLTPSEFFFHAMGGR 405
           AGLTPSEF+FHAMGGR
Sbjct: 255 AGLTPSEFYFHAMGGR 270



 Score =  138 bits (347), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 208  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 267

Query: 1069 GGR 1071
            GGR
Sbjct: 268  GGR 270


>gi|194460426|gb|ACF71887.1| RNA polymerase II [Eufriesea tucumana]
          Length = 271

 Score =  520 bits (1340), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 254/317 (80%), Positives = 265/317 (83%), Gaps = 46/317 (14%)

Query: 94  ILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMG 153
           ILKP PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MG
Sbjct: 1   ILKPNPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMG 60

Query: 154 ILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQT 213
           ILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG              
Sbjct: 61  ILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG-------------- 106

Query: 214 YLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKED 273
                                           HSIGIGDTIADPQTYLEIQ AIKKAKED
Sbjct: 107 --------------------------------HSIGIGDTIADPQTYLEIQKAIKKAKED 134

Query: 274 VIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVA 333
           VIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+
Sbjct: 135 VIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVS 194

Query: 334 GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 393
           GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 195 GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 254

Query: 394 PSEFFFHAMGGREGLID 410
           PSEF+FHAMGGREGLID
Sbjct: 255 PSEFYFHAMGGREGLID 271



 Score =  148 bits (373), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 204  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 263

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 264  GGREGLID 271


>gi|194460303|gb|ACF71826.1| RNA polymerase II [Euglossa cordata]
          Length = 269

 Score =  520 bits (1340), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 252/315 (80%), Positives = 263/315 (83%), Gaps = 46/315 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDG MPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGXMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGI
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 254

Query: 385 ENSYLAGLTPSEFFF 399
           ENSYLAGLTPSEF+F
Sbjct: 255 ENSYLAGLTPSEFYF 269



 Score =  124 bits (312), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/57 (96%), Positives = 57/57 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFF 1065
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+F
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYF 269


>gi|38232355|gb|AAR15013.1| RNA polymerase II largest subunit [Paralamyctes sp. JCR-2003]
          Length = 370

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 263/373 (70%), Positives = 289/373 (77%), Gaps = 53/373 (14%)

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+ GILCKK+LGTS+GSLLHI  LELG E+ G FY +IQ V
Sbjct: 1   GPYKWISPGDTKVLVEHGELISGILCKKTLGTSAGSLLHIVTLELGWEIAGYFYWHIQMV 60

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           +NNWLLLEG                                              H+IGI
Sbjct: 61  INNWLLLEG----------------------------------------------HTIGI 74

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
            DTIADPQTY++IQ AIKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDAR
Sbjct: 75  DDTIADPQTYVDIQNAIKKAKQDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDAR 134

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTG SA+KSL+++NN K MVVAGSKGS INISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 135 DKTGSSAQKSLSDFNNFKGMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPH 194

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 195 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 254

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           S+M  YD T+RNSVGQLIQLRYGEDGL G AVE Q + T+  S+K FE K++FD SNER 
Sbjct: 255 SIMATYDGTIRNSVGQLIQLRYGEDGLDGGAVEVQSLPTLKPSNKAFEKKFKFDVSNER- 313

Query: 491 TLRNVSSLRRVVN 503
                  L+RV N
Sbjct: 314 ------HLKRVFN 320



 Score =  169 bits (428), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/216 (45%), Positives = 128/216 (59%), Gaps = 17/216 (7%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 156  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 215

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEF 1117
            LTPSEFFFHAMGGREGLIDTAVKTAET  +   L +   +    YD   +N+V     + 
Sbjct: 216  LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESIMATYDGTIRNSV----GQL 271

Query: 1118 VNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNA 1177
            + + Y     D   +    L       +  +KK   +  +E+        L  +FN+D  
Sbjct: 272  IQLRYGEDGLDGGAVEVQSLPTLKPSNKAFEKKFKFDVSNER-------HLKRVFNEDIV 324

Query: 1178 EKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCI 1213
            +++     I+    S+++ E D + K  D   LR +
Sbjct: 325  KEVTGSAHIV----SELEKEWDILRK--DREILRNV 354



 Score =  159 bits (403), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/161 (51%), Positives = 102/161 (63%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMES+M  YD T+RNSVGQLIQLRYGEDGL G AVE Q + T+  S+K FE
Sbjct: 243 GYIQRRLIKAMESIMATYDGTIRNSVGQLIQLRYGEDGLDGGAVEVQSLPTLKPSNKAFE 302

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD SNER L+R+FNED+++E+ GS  ++SELEK                       
Sbjct: 303 KKFKFDVSNERHLKRVFNEDIVKEVTGSAHIVSELEK----------------------- 339

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                       EW+ L +DRE LR +F  G+S VVLPCNL
Sbjct: 340 ------------EWDILRKDREILRNVFPKGDSKVVLPCNL 368


>gi|259016106|gb|ACV89333.1| RNA polymerase II 215kD subunit [Ametastegia equiseti]
          Length = 285

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 253/317 (79%), Positives = 263/317 (82%), Gaps = 46/317 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILM LP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 8   KEQMMNILMHLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 67

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
            Y+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 68  QYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 127

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 128 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 181

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 182 ----------------------------------------NTLRQTFENQVNRILNDARD 201

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 202 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 261

Query: 372 IKDDYGPESRGFVENSY 388
           IKDDYGPESRGFVENSY
Sbjct: 262 IKDDYGPESRGFVENSY 278



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/46 (97%), Positives = 46/46 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY 1054
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY
Sbjct: 233  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY 278


>gi|194460436|gb|ACF71892.1| RNA polymerase II [Euglossa azureoviridis]
          Length = 267

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 252/313 (80%), Positives = 262/313 (83%), Gaps = 46/313 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGI
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 254

Query: 385 ENSYLAGLTPSEF 397
           ENSYLAGLTPSEF
Sbjct: 255 ENSYLAGLTPSEF 267



 Score =  120 bits (302), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/55 (98%), Positives = 55/55 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 1063
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 267


>gi|194460482|gb|ACF71915.1| RNA polymerase II [Eufriesea macroglossa]
          Length = 269

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 252/314 (80%), Positives = 263/314 (83%), Gaps = 46/314 (14%)

Query: 86  DGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVV 145
           DGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+V
Sbjct: 2   DGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMV 61

Query: 146 EHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIG 205
           EHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGIG
Sbjct: 62  EHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIG 121

Query: 206 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQM 265
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                    
Sbjct: 122 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG-------------------- 161

Query: 266 AIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 325
                                     NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN
Sbjct: 162 --------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 195

Query: 326 NLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 385
           NLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE
Sbjct: 196 NLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 255

Query: 386 NSYLAGLTPSEFFF 399
           NSYLAGLTPSEF+F
Sbjct: 256 NSYLAGLTPSEFYF 269



 Score =  124 bits (312), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/57 (96%), Positives = 57/57 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFF 1065
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+F
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYF 269


>gi|194460323|gb|ACF71836.1| RNA polymerase II [Euglossa flammea]
          Length = 269

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/315 (79%), Positives = 263/315 (83%), Gaps = 46/315 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGI
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF 
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFX 254

Query: 385 ENSYLAGLTPSEFFF 399
           +NSYLAGLTPSEF+F
Sbjct: 255 KNSYLAGLTPSEFYF 269



 Score =  121 bits (303), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/57 (92%), Positives = 56/57 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFF 1065
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF +NSYLAGLTPSEF+F
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFXKNSYLAGLTPSEFYF 269


>gi|194460363|gb|ACF71856.1| RNA polymerase II [Euglossa sapphirina]
          Length = 270

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 252/315 (80%), Positives = 263/315 (83%), Gaps = 46/315 (14%)

Query: 92  PCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLL 151
           PCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+
Sbjct: 1   PCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELV 60

Query: 152 MGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADP 211
           MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG            
Sbjct: 61  MGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG------------ 108

Query: 212 QTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAK 271
                                             HSIGIGDTIADPQTYLEIQ AIKKAK
Sbjct: 109 ----------------------------------HSIGIGDTIADPQTYLEIQKAIKKAK 134

Query: 272 EDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMV 331
           EDVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMV
Sbjct: 135 EDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMV 194

Query: 332 VAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 391
           V+GSKGSNINISQVIACVGQQNVEGKRIPFGFRK TLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 195 VSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKITLPHFIKDDYGPESRGFVENSYLAG 254

Query: 392 LTPSEFFFHAMGGRE 406
           LTPSEF+FHAMGGRE
Sbjct: 255 LTPSEFYFHAMGGRE 269



 Score =  136 bits (343), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/64 (95%), Positives = 63/64 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRK TLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 206  SQVIACVGQQNVEGKRIPFGFRKITLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 265

Query: 1069 GGRE 1072
            GGRE
Sbjct: 266  GGRE 269


>gi|194460456|gb|ACF71902.1| RNA polymerase II [Euglossa dressleri]
          Length = 267

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 251/313 (80%), Positives = 261/313 (83%), Gaps = 46/313 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGI
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 254

Query: 385 ENSYLAGLTPSEF 397
           ENSYLAGLTPSE 
Sbjct: 255 ENSYLAGLTPSEI 267



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/55 (96%), Positives = 54/55 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 1063
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEI 267


>gi|259016124|gb|ACV89342.1| RNA polymerase II 215kD subunit [Austroneurorthus brunneipennis]
          Length = 282

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 251/316 (79%), Positives = 263/316 (83%), Gaps = 46/316 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP+WDGKMPQP ILKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPDDED G
Sbjct: 13  KEQMMNLLMFLPLWDGKMPQPAILKPKPLWTGKQLFSLIIPGNVNLIRTHSTHPDDEDDG 72

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHE CG FYGNIQTVV
Sbjct: 73  PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHETCGTFYGNIQTVV 132

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 133 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 186

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 187 ----------------------------------------NTLRQTFENQVNRILNDARD 206

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 207 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 266

Query: 372 IKDDYGPESRGFVENS 387
           IKDDYGPESRGFVENS
Sbjct: 267 IKDDYGPESRGFVENS 282



 Score =  100 bits (248), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/45 (97%), Positives = 45/45 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS 1053
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS
Sbjct: 238  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS 282


>gi|194460424|gb|ACF71886.1| RNA polymerase II [Eufriesea tucumana]
          Length = 268

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 251/313 (80%), Positives = 261/313 (83%), Gaps = 46/313 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGI
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 254

Query: 385 ENSYLAGLTPSEF 397
           ENSYLAG TPSEF
Sbjct: 255 ENSYLAGXTPSEF 267



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/55 (96%), Positives = 54/55 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 1063
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG TPSEF
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGXTPSEF 267


>gi|317417258|emb|CBI70659.1| RNA polymerase II [Oecetis (Pseudosetodes) sp. NHRS DN4]
          Length = 267

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 251/313 (80%), Positives = 261/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGHEV GRFYGNIQTV+NNWLLLEG             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHEVAGRFYGNIQTVINNWLLLEG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|259016116|gb|ACV89338.1| RNA polymerase II 215kD subunit [Nannochorista sp. BMW-2009]
          Length = 278

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/315 (79%), Positives = 263/315 (83%), Gaps = 46/315 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MNILMFLP W+GKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 10  KEQIMNILMFLPTWNGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 69

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEV GRFYGNIQTVV
Sbjct: 70  PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHEVAGRFYGNIQTVV 129

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTY+EIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 130 NNWLLLEGHSIGIGDTIADPQTYMEIQRAIKKAKEDVIEVIQKAHNMELEPTPG------ 183

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 184 ----------------------------------------NTLRQTFENQVNRILNDARD 203

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 204 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 263

Query: 372 IKDDYGPESRGFVEN 386
           IKDDYGPESRGFVEN
Sbjct: 264 IKDDYGPESRGFVEN 278



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/44 (97%), Positives = 44/44 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVEN 1052
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVEN
Sbjct: 235  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVEN 278


>gi|317417176|emb|CBI70618.1| RNA polymerase II [Oecetis lacustris]
          Length = 267

 Score =  514 bits (1325), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 251/313 (80%), Positives = 261/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGHEV GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHEVAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|283549599|emb|CAX62879.1| RNA polymerase 2 [Condocerus paludosus]
 gi|317417160|emb|CBI70610.1| RNA polymerase II [Triplectides tigrinus]
 gi|317417170|emb|CBI70615.1| RNA polymerase II [Triaenodes bicolor]
 gi|317417204|emb|CBI70632.1| RNA polymerase II [Parasetodes respersellus]
 gi|317417238|emb|CBI70649.1| RNA polymerase II [Condocerus paludosus]
 gi|317417248|emb|CBI70654.1| RNA polymerase II [Setodes bispinus]
 gi|317417278|emb|CBI70669.1| RNA polymerase II [Sericodes sp. NHRS EE9]
 gi|317417280|emb|CBI70670.1| RNA polymerase II [Sericodes sp. NHRS EF1]
          Length = 267

 Score =  514 bits (1325), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 251/313 (80%), Positives = 261/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLLEG             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLEG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|317417282|emb|CBI70671.1| RNA polymerase II [Oecetis akimi]
          Length = 267

 Score =  514 bits (1325), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 251/313 (80%), Positives = 260/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGHE  GRFYGNIQTVVNNWLLLEG             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHETAGRFYGNIQTVVNNWLLLEG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|317417302|emb|CBI70681.1| RNA polymerase II [Oecetis royi group sp. NHRS EG5]
          Length = 267

 Score =  514 bits (1324), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/313 (79%), Positives = 261/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+F+LIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFTLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGHEV GRFYGNIQTV+NNWLLLEG             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHEVAGRFYGNIQTVINNWLLLEG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|38232217|gb|AAR14944.1| RNA polymerase II largest subunit [Anopsobius neozelandicus]
          Length = 370

 Score =  514 bits (1324), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/391 (67%), Positives = 296/391 (75%), Gaps = 56/391 (14%)

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
           Y+WISPGDTKV+VEHG L+ GILCKK+LGTS+GSLLHI  LELG E+ G FY +IQ V+N
Sbjct: 3   YKWISPGDTKVLVEHGELISGILCKKTLGTSAGSLLHIVMLELGWEIAGLFYWHIQMVIN 62

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
           NWLLLEG                                              H+IGI D
Sbjct: 63  NWLLLEG----------------------------------------------HTIGIDD 76

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIADPQTY++IQ AIKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDK
Sbjct: 77  TIADPQTYVDIQNAIKKAKQDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARDK 136

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
           TG SA+KSL+++NN K MVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHFI
Sbjct: 137 TGSSAQKSLSDFNNFKGMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 196

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES+
Sbjct: 197 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESI 256

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           M  YD TVRNSVGQLIQLRYGEDGL G AVE Q + T+  S+K FE K++FD SNER   
Sbjct: 257 MATYDGTVRNSVGQLIQLRYGEDGLDGGAVEFQGLPTLKPSNKAFEKKFKFDISNER--- 313

Query: 493 RNVSSLRRVVNS---KPLLIGCWKLTSVEKE 520
                ++RV N    K L+     ++ +EKE
Sbjct: 314 ----QMKRVFNEDIVKELMGTSHIVSELEKE 340



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 86/102 (84%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 167  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 226

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +    YD   +N+V
Sbjct: 227  GGREGLIDTAVKTAETGYIQRRLIKAMESIMATYDGTVRNSV 268



 Score =  167 bits (422), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 86/161 (53%), Positives = 105/161 (65%), Gaps = 35/161 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMES+M  YD TVRNSVGQLIQLRYGEDGL G AVE Q + T+  S+K FE
Sbjct: 243 GYIQRRLIKAMESIMATYDGTVRNSVGQLIQLRYGEDGLDGGAVEFQGLPTLKPSNKAFE 302

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++FD SNERQ++R+FNED+++ELMG+  ++SELEKE                      
Sbjct: 303 KKFKFDISNERQMKRVFNEDIVKELMGTSHIVSELEKE---------------------- 340

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNL 752
                        WE L +DR+ALR +F  G+S VVLPCNL
Sbjct: 341 -------------WEMLKKDRDALRNVFPKGDSKVVLPCNL 368


>gi|283549589|emb|CAX62874.1| RNA polymerase 2 [Taskiropsyche lacustris]
          Length = 267

 Score =  514 bits (1323), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/313 (79%), Positives = 260/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDEGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGHE  GRFYGNIQTVVNNWLLLEG             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHETAGRFYGNIQTVVNNWLLLEG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTY+EIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYIEIQKAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|283549597|emb|CAX62878.1| RNA polymerase 2 [Gracilipsodes psocopterus]
 gi|317417162|emb|CBI70611.1| RNA polymerase II [Gracilipsodes aureus]
 gi|317417166|emb|CBI70613.1| RNA polymerase II [Gracilipsodes grandis]
 gi|317417192|emb|CBI70626.1| RNA polymerase II [Grumichella flaveola]
 gi|317417200|emb|CBI70630.1| RNA polymerase II [Triplexa villa]
 gi|317417202|emb|CBI70631.1| RNA polymerase II [Triplexa villa]
          Length = 267

 Score =  514 bits (1323), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/313 (79%), Positives = 261/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+F+LIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFTLIIPGNVNMIRTHSTHPDDEDEGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLLEG             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLEG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|31127018|gb|AAF26632.2|AF138982_1 RNA polymerase II largest subunit [Hanseniella sp. 'Han']
          Length = 468

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/393 (67%), Positives = 295/393 (75%), Gaps = 56/393 (14%)

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+ GILCKK+LGTS+GSLLHI  LELG E  G FY +IQTV
Sbjct: 1   GPYKWISPGDTKVLVEHGELISGILCKKTLGTSAGSLLHIVMLELGWETAGLFYWHIQTV 60

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNNWLLLEG                                              H+IG+
Sbjct: 61  VNNWLLLEG----------------------------------------------HTIGM 74

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
            DTIAD QTY EI+  I+KAK+DVIEVI+KAHN +LEP+PGNTLRQTFENQVNRILNDAR
Sbjct: 75  CDTIADRQTYEEIKKTIQKAKQDVIEVIEKAHNDELEPSPGNTLRQTFENQVNRILNDAR 134

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 135 DKTGGSAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPH 194

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 195 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 254

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMV YD T+RNSV QLIQLRYGEDGL G AVE Q + T+  +H  F  K+RFD SNER 
Sbjct: 255 SVMVTYDGTIRNSVCQLIQLRYGEDGLDGGAVEFQSMPTLKPNHDAFARKFRFDVSNER- 313

Query: 491 TLRNVSSLRRVVNS---KPLLIGCWKLTSVEKE 520
                 ++R++      K L+     L+ +EKE
Sbjct: 314 ------NMRKIFTEDVVKDLIGSAQVLSELEKE 340



 Score =  171 bits (433), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 87/102 (85%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM
Sbjct: 167  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 226

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+V
Sbjct: 227  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTIRNSV 268



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD T+RNSV QLIQLRYGEDGL G AVE Q + T+  +H  F 
Sbjct: 243 GYIQRRLIKAMESVMVTYDGTIRNSVCQLIQLRYGEDGLDGGAVEFQSMPTLKPNHDAFA 302

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+RFD SNER +R+IF EDV+++L+GS  V+SELEK                       
Sbjct: 303 RKFRFDVSNERNMRKIFTEDVVKDLIGSAQVLSELEK----------------------- 339

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EWE L +DR++LREIF  G+S VVLPCNL  +I+  Q+
Sbjct: 340 ------------EWELLQKDRKSLREIFPKGDSKVVLPCNLQRMIWNAQK 377



 Score =  100 bits (248), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/61 (75%), Positives = 53/61 (86%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V GED++SKQANENATLLF CL+RSTLCTK VAE +RL++EAFEWL+GEIE RFQQA   
Sbjct: 408  VVGEDRISKQANENATLLFNCLLRSTLCTKRVAEEFRLTTEAFEWLLGEIETRFQQAHSQ 467

Query: 1013 A 1013
            A
Sbjct: 468  A 468


>gi|317417260|emb|CBI70660.1| RNA polymerase II [Adicella reducta]
          Length = 267

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/313 (79%), Positives = 261/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|317417290|emb|CBI70675.1| RNA polymerase II [Homilia lardeuxi]
 gi|317417292|emb|CBI70676.1| RNA polymerase II [Homilia lardeuxi]
          Length = 267

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/313 (79%), Positives = 261/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLLEG             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLEG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQKAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|317417194|emb|CBI70627.1| RNA polymerase II [Hudsonema amabile]
 gi|317417276|emb|CBI70668.1| RNA polymerase II [Achoropsyche duodecimpunctata]
          Length = 267

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/313 (79%), Positives = 261/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQKAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|317417158|emb|CBI70609.1| RNA polymerase II [Triplectides aequalichelatus]
 gi|317417164|emb|CBI70612.1| RNA polymerase II [Symphitoneuria triangulata]
 gi|317417168|emb|CBI70614.1| RNA polymerase II [Symphitoneuria clara]
 gi|317417234|emb|CBI70647.1| RNA polymerase II [Symphitoneuria opposita]
 gi|317417244|emb|CBI70652.1| RNA polymerase II [Triplectides gonetalus]
 gi|317417306|emb|CBI70683.1| RNA polymerase II [Tagalopsyche jolandae]
          Length = 267

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/313 (79%), Positives = 261/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLLEG             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLEG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|317417172|emb|CBI70616.1| RNA polymerase II [Oecetis ochracea]
          Length = 267

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/313 (79%), Positives = 261/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYRWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGHEV GRFYGNIQTV+NNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHEVAGRFYGNIQTVINNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|317417190|emb|CBI70625.1| RNA polymerase II [Atanatolica botosaneanui]
 gi|317417214|emb|CBI70637.1| RNA polymerase II [Brachysetodes tripartitus]
          Length = 267

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/313 (79%), Positives = 261/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+F+LIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFTLIIPGNVNMIRTHSTHPDDEDEGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|317417284|emb|CBI70672.1| RNA polymerase II [Triaenodes kwabena]
          Length = 267

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/313 (79%), Positives = 260/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLLEG             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLEG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINIS VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISXVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            + VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SXVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|317417186|emb|CBI70623.1| RNA polymerase II [Hudsonema alienum]
          Length = 267

 Score =  511 bits (1317), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 250/313 (79%), Positives = 260/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G Y+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDGAYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLLEG             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLEG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|317417224|emb|CBI70642.1| RNA polymerase II [Notoperata sp. NHRS CW6]
          Length = 267

 Score =  511 bits (1317), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 250/313 (79%), Positives = 260/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLLEG             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLEG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMG R
Sbjct: 255 TPSEFYFHAMGRR 267



 Score =  135 bits (339), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            G R
Sbjct: 265  GRR 267


>gi|317417146|emb|CBI70603.1| RNA polymerase II [Trichovespula macrocera]
          Length = 267

 Score =  511 bits (1317), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/313 (79%), Positives = 260/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|289779497|emb|CAX52792.1| RNA polymerase II large subunit [Orthopsyche schefterae]
 gi|289779551|emb|CAX52822.1| RNA polymerase II large subunit [Ecnomina krokale]
          Length = 267

 Score =  511 bits (1317), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/313 (79%), Positives = 260/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQKAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|283549579|emb|CAX62869.1| RNA polymerase 2 [Notidobiella chacayana]
 gi|317417178|emb|CBI70619.1| RNA polymerase II [Triaenodes detruncatus]
 gi|317417184|emb|CBI70622.1| RNA polymerase II [Triplectidina moselyi]
 gi|317417236|emb|CBI70648.1| RNA polymerase II [Notalina moselyi]
 gi|317417242|emb|CBI70651.1| RNA polymerase II [Triplectides australis]
 gi|317417252|emb|CBI70656.1| RNA polymerase II [Triplectides magnus]
 gi|317417262|emb|CBI70661.1| RNA polymerase II [Mystacides niger]
 gi|317417264|emb|CBI70662.1| RNA polymerase II [Athripsodes cinereus]
 gi|317417266|emb|CBI70663.1| RNA polymerase II [Athripsodes aterrimus]
 gi|317417272|emb|CBI70666.1| RNA polymerase II [Notoperata maculata]
 gi|317417308|emb|CBI70684.1| RNA polymerase II [Tagalopsyche jolandae]
          Length = 267

 Score =  511 bits (1317), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/313 (79%), Positives = 261/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|283549587|emb|CAX62873.1| RNA polymerase 2 [Caenota plicata]
          Length = 267

 Score =  511 bits (1317), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/313 (79%), Positives = 260/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGHE  GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHETAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|283549549|emb|CAX62854.1| RNA polymerase 2 [Molanna angustata]
          Length = 267

 Score =  511 bits (1317), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/313 (79%), Positives = 260/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|283549575|emb|CAX62867.1| RNA polymerase 2 [Sericostoma clypeatum]
          Length = 267

 Score =  511 bits (1317), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/313 (79%), Positives = 261/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGHEV GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHEVAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQKAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVI+VIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIDVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|317417296|emb|CBI70678.1| RNA polymerase II [Ptochoecetis africana]
 gi|317417298|emb|CBI70679.1| RNA polymerase II [Ptochoecetis africana]
          Length = 267

 Score =  511 bits (1317), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/313 (79%), Positives = 260/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGDLIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|321468524|gb|EFX79508.1| hypothetical protein DAPPUDRAFT_319346 [Daphnia pulex]
          Length = 878

 Score =  511 bits (1315), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 257/381 (67%), Positives = 291/381 (76%), Gaps = 47/381 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMP+P ILKP+PLWTGKQ+F+LIIPGNVNM RTHSTHPDDED G
Sbjct: 531 KEQMMNLLMFLPTWDGKMPKPAILKPRPLWTGKQLFTLIIPGNVNMMRTHSTHPDDEDEG 590

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKVV+E+G L+MGILCKK+LG S+ SLLHI F+ELGHEVCGRFYGNIQTV+
Sbjct: 591 PYKWISPGDTKVVIENGELVMGILCKKTLGASAASLLHIIFMELGHEVCGRFYGNIQTVI 650

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EGHSIGIGD +AD QTYL IQ  I+ AKEDVIEV+Q++ N +LEPTPG      
Sbjct: 651 NNWLLYEGHSIGIGDMLADHQTYLNIQATIQNAKEDVIEVLQRSQNDELEPTPG------ 704

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQV RI+ DA++
Sbjct: 705 ----------------------------------------NTLRQTFENQVLRIIYDAQE 724

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           +    AK SLTEYNNLKAM VAGS GS+I  SQ IACVGQQNVEG+RIPFGFRKRTLPHF
Sbjct: 725 QASDLAKNSLTEYNNLKAMAVAGSSGSSITTSQAIACVGQQNVEGQRIPFGFRKRTLPHF 784

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDD GPESRGFVENSY++GLTPSEF+FHAM GRE LI      +ETG I R+L+K MES
Sbjct: 785 IKDDNGPESRGFVENSYVSGLTPSEFYFHAMAGRELLIYETRIKSETGII-RQLVKGMES 843

Query: 432 VMVHYDCTVRNSVGQLIQLRY 452
           VMVHYD TVRNS G+L+ LRY
Sbjct: 844 VMVHYDGTVRNSAGRLLLLRY 864



 Score =  134 bits (336), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 64/100 (64%), Positives = 77/100 (77%), Gaps = 1/100 (1%)

Query: 1010 QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 1069
            Q IACVGQQNVEG+RIPFGFRKRTLPHFIKDD GPESRGFVENSY++GLTPSEF+FHAM 
Sbjct: 757  QAIACVGQQNVEGQRIPFGFRKRTLPHFIKDDNGPESRGFVENSYVSGLTPSEFYFHAMA 816

Query: 1070 GREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            GRE LI      +ET  ++  L +   +  ++YD   +N+
Sbjct: 817  GRELLIYETRIKSET-GIIRQLVKGMESVMVHYDGTVRNS 855



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 36/43 (83%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENI +TPRQIITPQ N+PVMGIVQDTL    K+TKRDVFL K
Sbjct: 489  VENILLTPRQIITPQANKPVMGIVQDTLVGTSKLTKRDVFLQK 531



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 38/51 (74%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILM 80
           E+  ILGMDPK+ARPDWM++T LPVPP SVRPAVV    +  Q+ + + L+
Sbjct: 212 EDCAILGMDPKYARPDWMILTCLPVPPPSVRPAVVTRDFSIRQDDITDKLV 262



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/32 (71%), Positives = 27/32 (84%)

Query: 594 IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRY 625
           I R+L+K MESVMVHYD TVRNS G+L+ LRY
Sbjct: 833 IIRQLVKGMESVMVHYDGTVRNSAGRLLLLRY 864


>gi|317417274|emb|CBI70667.1| RNA polymerase II [Erotesis baltica]
          Length = 267

 Score =  511 bits (1315), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/313 (79%), Positives = 261/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH++ GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDIAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|317417216|emb|CBI70638.1| RNA polymerase II [Brachysetodes bifurcatus]
          Length = 267

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/313 (79%), Positives = 261/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+F+LIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFTLIIPGNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|317417220|emb|CBI70640.1| RNA polymerase II [Leptocerus ousta]
          Length = 267

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/313 (79%), Positives = 261/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTY+EIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYVEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|194460349|gb|ACF71849.1| RNA polymerase II [Euglossa piliventris]
          Length = 274

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 254/320 (79%), Positives = 265/320 (82%), Gaps = 46/320 (14%)

Query: 91  QPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSL 150
           QPCILKP PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L
Sbjct: 1   QPCILKPXPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGEL 60

Query: 151 LMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIAD 210
           +MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG           
Sbjct: 61  VMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG----------- 109

Query: 211 PQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKA 270
                                              HSIGIGDTIADPQTYLEI  A KKA
Sbjct: 110 -----------------------------------HSIGIGDTIADPQTYLEIXKAXKKA 134

Query: 271 KEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAM 330
           KE VIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAM
Sbjct: 135 KEXVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAM 194

Query: 331 VVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLA 390
           VV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLA
Sbjct: 195 VVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLA 254

Query: 391 GLTPSEFFFHAMGGREGLID 410
           GLTPSEF+FHAMGGREGLID
Sbjct: 255 GLTPSEFYFHAMGGREGLID 274



 Score =  147 bits (371), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 207  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 266

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 267  GGREGLID 274


>gi|283549583|emb|CAX62871.1| RNA polymerase 2 [Coenoria boera]
          Length = 267

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/313 (79%), Positives = 260/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|317417188|emb|CBI70624.1| RNA polymerase II [Adicella sp. NHRS BS3]
          Length = 267

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/313 (79%), Positives = 260/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQKAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS LAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSXLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  135 bits (339), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS LAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSXLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|194460452|gb|ACF71900.1| RNA polymerase II [Eufriesea corusca]
          Length = 270

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 247/315 (78%), Positives = 260/315 (82%), Gaps = 46/315 (14%)

Query: 91  QPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSL 150
           QPCILKPK LW+GKQ+FSLIIP NVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L
Sbjct: 2   QPCILKPKXLWSGKQIFSLIIPANVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGEL 61

Query: 151 LMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIAD 210
           +MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG           
Sbjct: 62  VMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG----------- 110

Query: 211 PQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKA 270
                                              HSIGIGDTIADPQTYLEIQ AIKK 
Sbjct: 111 -----------------------------------HSIGIGDTIADPQTYLEIQKAIKKX 135

Query: 271 KEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAM 330
           KE VIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAM
Sbjct: 136 KEXVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAM 195

Query: 331 VVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLA 390
           VV+GSKGSNINISQVIACVGQQNV+GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLA
Sbjct: 196 VVSGSKGSNINISQVIACVGQQNVQGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLA 255

Query: 391 GLTPSEFFFHAMGGR 405
           GLTPSEF+FHAMGGR
Sbjct: 256 GLTPSEFYFHAMGGR 270



 Score =  137 bits (345), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNV+GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 208  SQVIACVGQQNVQGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 267

Query: 1069 GGR 1071
            GGR
Sbjct: 268  GGR 270


>gi|317417152|emb|CBI70606.1| RNA polymerase II [Tasmanthrus angustipennis]
          Length = 267

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/313 (79%), Positives = 259/313 (82%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTY EIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYQEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|317417182|emb|CBI70621.1| RNA polymerase II [Notalina bifaria]
 gi|317417198|emb|CBI70629.1| RNA polymerase II [Nectopsyche punctata]
 gi|317417246|emb|CBI70653.1| RNA polymerase II [Notalina fulva]
          Length = 267

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/313 (79%), Positives = 260/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTVVN WLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNTWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|317417174|emb|CBI70617.1| RNA polymerase II [Mystacides longicornis]
          Length = 267

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/313 (79%), Positives = 260/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTF NQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFXNQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|317417142|emb|CBI70601.1| RNA polymerase II [Philorheithrus agilis]
 gi|317417156|emb|CBI70608.1| RNA polymerase II [Austrheithrus glymma]
          Length = 267

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/313 (79%), Positives = 259/313 (82%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTY EIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYQEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|62911533|gb|AAY21397.1| RNA polymerase II [Calliopsis anthidia]
 gi|62911535|gb|AAY21398.1| RNA polymerase II [Calliopsis fracta]
 gi|62911537|gb|AAY21399.1| RNA polymerase II [Calliopsis pugionis]
 gi|62911631|gb|AAY21446.1| RNA polymerase II [Melitturga clavicornis]
 gi|62911645|gb|AAY21453.1| RNA polymerase II [Panurgus calcaratus]
 gi|62911655|gb|AAY21458.1| RNA polymerase II [Protoxaea gloriosa]
 gi|62911697|gb|AAY21479.1| RNA polymerase II [Calliopsis subalpina]
 gi|307779500|gb|ADN94031.1| RNA polymerase II [Holcopasites calliopsidis]
 gi|307779502|gb|ADN94032.1| RNA polymerase II [Holcopasites arizonicus]
 gi|307779504|gb|ADN94033.1| RNA polymerase II [Holcopasites insoletus]
 gi|307779508|gb|ADN94035.1| RNA polymerase II [Holcopasites stevensi]
 gi|307779510|gb|ADN94036.1| RNA polymerase II [Holcopasites minimus]
          Length = 280

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 247/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|317417270|emb|CBI70665.1| RNA polymerase II [Leptorussa darlingtoni]
          Length = 267

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 247/313 (78%), Positives = 260/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTV+N WLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVINTWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|194460446|gb|ACF71897.1| RNA polymerase II [Euglossa deceptrix]
          Length = 264

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/310 (80%), Positives = 257/310 (82%), Gaps = 46/310 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDXEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           V HG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGI
Sbjct: 61  VXHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 254

Query: 385 ENSYLAGLTP 394
           ENSYLAGLTP
Sbjct: 255 ENSYLAGLTP 264



 Score =  114 bits (286), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/52 (98%), Positives = 52/52 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 1060
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 264


>gi|62911623|gb|AAY21442.1| RNA polymerase II [Melitta eickworti]
 gi|62911659|gb|AAY21460.1| RNA polymerase II [Rediviva mcgregori]
 gi|62911661|gb|AAY21461.1| RNA polymerase II [Redivivoides simulans]
          Length = 280

 Score =  508 bits (1308), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHS+HPDDED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSSHPDDEDEG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|62911621|gb|AAY21441.1| RNA polymerase II [Melitta capensis]
 gi|307779472|gb|ADN94017.1| RNA polymerase II [Melitta arrogans]
          Length = 280

 Score =  508 bits (1308), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHS+HPDDED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSSHPDDEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|317417148|emb|CBI70604.1| RNA polymerase II [Barynema sp. NHRS CQ7]
          Length = 267

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/313 (79%), Positives = 259/313 (82%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAH M+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHIMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|62911641|gb|AAY21451.1| RNA polymerase II [Plenoculus nr. parvus BND-2010]
          Length = 280

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMVRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|126508340|gb|ABO15353.1| RNA polymerase II [Rhopalosoma nearcticum]
          Length = 280

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|307779284|gb|ADN93923.1| RNA polymerase II [Centris analis]
 gi|307779530|gb|ADN94046.1| RNA polymerase II [Thalestria spinosa]
          Length = 280

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|62911527|gb|AAY21394.1| RNA polymerase II [Anthidium oblongatum]
 gi|62911529|gb|AAY21395.1| RNA polymerase II [Bicyrtes ventralis]
 gi|62911541|gb|AAY21401.1| RNA polymerase II [Eucerceris tricolor]
 gi|62911543|gb|AAY21402.1| RNA polymerase II [Chelostoma fuliginosum]
 gi|62911545|gb|AAY21403.1| RNA polymerase II [Chilimelissa rozeni]
 gi|62911547|gb|AAY21404.1| RNA polymerase II [Chilicola styliventris]
 gi|62911549|gb|AAY21405.1| RNA polymerase II [Clypeadon haigi]
 gi|62911561|gb|AAY21411.1| RNA polymerase II [Caupolicana yarrowi]
 gi|62911575|gb|AAY21418.1| RNA polymerase II [Callohesma calliopsella]
 gi|62911579|gb|AAY21420.1| RNA polymerase II [Fideliopsis major]
 gi|62911593|gb|AAY21427.1| RNA polymerase II [Hylaeus amiculus]
 gi|62911599|gb|AAY21430.1| RNA polymerase II [Isodontia mexicana]
 gi|62911609|gb|AAY21435.1| RNA polymerase II [Chilicolletes delahozii]
 gi|62911613|gb|AAY21437.1| RNA polymerase II [Lithurgus echinocacti]
 gi|62911617|gb|AAY21439.1| RNA polymerase II [Macropis europaea]
 gi|62911619|gb|AAY21440.1| RNA polymerase II [Macropis nuda]
 gi|62911635|gb|AAY21448.1| RNA polymerase II [Clitemnestra bipunctata]
 gi|62911647|gb|AAY21454.1| RNA polymerase II [Penapis penai]
 gi|62911651|gb|AAY21456.1| RNA polymerase II [Sphex lucae]
 gi|62911665|gb|AAY21463.1| RNA polymerase II [Scrapter heterodoxus]
 gi|62911667|gb|AAY21464.1| RNA polymerase II [Scrapter niger]
 gi|62911673|gb|AAY21467.1| RNA polymerase II [Sceliphron caementarium]
 gi|62911683|gb|AAY21472.1| RNA polymerase II [Trichocolletes sp. BND-2004]
 gi|62911687|gb|AAY21474.1| RNA polymerase II [Xanthesma furcifera]
 gi|62911689|gb|AAY21475.1| RNA polymerase II [Xeralictus bicuspidariae]
 gi|62911695|gb|AAY21478.1| RNA polymerase II [Andrena nasonii]
 gi|62911717|gb|AAY21489.1| RNA polymerase II [Hyleoides concinna]
 gi|71480592|gb|AAZ32221.1| RNA polymerase II large subunit [Heriades crucifera]
 gi|126508288|gb|ABO15327.1| RNA polymerase II [Dolichovespula maculata]
 gi|126508290|gb|ABO15328.1| RNA polymerase II [Vespula maculifrons]
 gi|126508294|gb|ABO15330.1| RNA polymerase II [Polistes metricus]
 gi|126508300|gb|ABO15333.1| RNA polymerase II [Ancistrocerus antilope]
 gi|126508302|gb|ABO15334.1| RNA polymerase II [Pseudodynerus quadrisectus]
 gi|126508304|gb|ABO15335.1| RNA polymerase II [Zethus garciai]
 gi|126508306|gb|ABO15336.1| RNA polymerase II [Zethus spinipes]
 gi|126508308|gb|ABO15337.1| RNA polymerase II [Australozethus tasmaniensis montanus]
 gi|126508310|gb|ABO15338.1| RNA polymerase II [Alphamenes campanulatus]
 gi|126508312|gb|ABO15339.1| RNA polymerase II [Eumenes fraternus]
 gi|126508314|gb|ABO15340.1| RNA polymerase II [Symmorphus cristatus]
 gi|126508316|gb|ABO15341.1| RNA polymerase II [Pachodynerus erynnis]
 gi|126508318|gb|ABO15342.1| RNA polymerase II [Stenodynerus anormis]
 gi|126508322|gb|ABO15344.1| RNA polymerase II [Euparagia richardsi]
 gi|126508324|gb|ABO15345.1| RNA polymerase II [Eustenogaster calyptodoma]
 gi|126508328|gb|ABO15347.1| RNA polymerase II [Parischnogaster mellyi]
 gi|126508330|gb|ABO15348.1| RNA polymerase II [Trimeria rhachiphora]
 gi|126508332|gb|ABO15349.1| RNA polymerase II [Pseudomasaris phaceliae]
 gi|307779272|gb|ADN93917.1| RNA polymerase II [Ancyla asiatica]
 gi|307779274|gb|ADN93918.1| RNA polymerase II [Ancyla holtzi anatolica]
 gi|307779276|gb|ADN93919.1| RNA polymerase II [Habropoda laboriosa]
 gi|307779278|gb|ADN93920.1| RNA polymerase II [Anthophora urbana]
 gi|307779280|gb|ADN93921.1| RNA polymerase II [Amegilla asserta]
 gi|307779282|gb|ADN93922.1| RNA polymerase II [Deltoptila aurulentocaudata]
 gi|307779286|gb|ADN93924.1| RNA polymerase II [Epicharis analis]
 gi|307779288|gb|ADN93925.1| RNA polymerase II [Epicharis sp. JS-2010]
 gi|307779290|gb|ADN93926.1| RNA polymerase II [Centris dimidiata]
 gi|307779292|gb|ADN93927.1| RNA polymerase II [Centris longimana]
 gi|307779294|gb|ADN93928.1| RNA polymerase II [Centris decolorata]
 gi|307779296|gb|ADN93929.1| RNA polymerase II [Centris atripes]
 gi|307779298|gb|ADN93930.1| RNA polymerase II [Centris hoffmanseggiae]
 gi|307779300|gb|ADN93931.1| RNA polymerase II [Ctenoplectrina sp. JS-2010]
 gi|307779302|gb|ADN93932.1| RNA polymerase II [Ctenoplectra bequaerti]
 gi|307779304|gb|ADN93933.1| RNA polymerase II [Diadasia bituberculata]
 gi|307779306|gb|ADN93934.1| RNA polymerase II [Ptilothrix sp. JS-2010]
 gi|307779308|gb|ADN93935.1| RNA polymerase II [Diadasina distincta]
 gi|307779310|gb|ADN93936.1| RNA polymerase II [Ancyloscelis sp. 1 JS-2010]
 gi|307779312|gb|ADN93937.1| RNA polymerase II [Alepidosceles sp. JS-2010]
 gi|307779314|gb|ADN93938.1| RNA polymerase II [Meliphilopsis sp. JS-2010]
 gi|307779316|gb|ADN93939.1| RNA polymerase II [Ancyloscelis sp. 2 JS-2010]
 gi|307779318|gb|ADN93940.1| RNA polymerase II [Melitoma sp. JS-2010]
 gi|307779334|gb|ADN93948.1| RNA polymerase II [Peponapis pruinosa]
 gi|307779338|gb|ADN93950.1| RNA polymerase II [Melissodes desponsa]
 gi|307779340|gb|ADN93951.1| RNA polymerase II [Eucera frater]
 gi|307779342|gb|ADN93952.1| RNA polymerase II [Xenoglossa angustior]
 gi|307779344|gb|ADN93953.1| RNA polymerase II [Svastra obliqua]
 gi|307779346|gb|ADN93954.1| RNA polymerase II [Melissoptila sp. JS-2010]
 gi|307779348|gb|ADN93955.1| RNA polymerase II [Thygater sp. JS-2010]
 gi|307779350|gb|ADN93956.1| RNA polymerase II [Florilegus sp. JS-2010]
 gi|307779352|gb|ADN93957.1| RNA polymerase II [Svastrina subapicalis]
 gi|307779354|gb|ADN93958.1| RNA polymerase II [Tetraloniella glauca]
 gi|307779356|gb|ADN93959.1| RNA polymerase II [Exaerete sp. JS-2010]
 gi|307779358|gb|ADN93960.1| RNA polymerase II [Eulaema meriana]
 gi|307779360|gb|ADN93961.1| RNA polymerase II [Euglossa piliventris]
 gi|307779362|gb|ADN93962.1| RNA polymerase II [Aglae caerulea]
 gi|307779364|gb|ADN93963.1| RNA polymerase II [Eufriesea surinamensis]
 gi|307779366|gb|ADN93964.1| RNA polymerase II [Anthophorula completa]
 gi|307779368|gb|ADN93965.1| RNA polymerase II [Anthophorula sp. 1 JS-2010]
 gi|307779370|gb|ADN93966.1| RNA polymerase II [Anthophorula sp. 2 JS-2010]
 gi|307779372|gb|ADN93967.1| RNA polymerase II [Exomalopsis sp. JS-2010]
 gi|307779374|gb|ADN93968.1| RNA polymerase II [Isepeolus cortesi]
 gi|307779376|gb|ADN93969.1| RNA polymerase II [Isepeolus atripilis]
 gi|307779378|gb|ADN93970.1| RNA polymerase II [Isepeolus luctuosus]
 gi|307779380|gb|ADN93971.1| RNA polymerase II [Isepeolus wagenknechti]
 gi|307779382|gb|ADN93972.1| RNA polymerase II [Melectoides bellus]
 gi|307779384|gb|ADN93973.1| RNA polymerase II [Xeromelecta californica]
 gi|307779386|gb|ADN93974.1| RNA polymerase II [Tetralonioidella sp. JS-2010]
 gi|307779388|gb|ADN93975.1| RNA polymerase II [Melecta albifrons]
 gi|307779402|gb|ADN93982.1| RNA polymerase II [Epeoloides pilosula]
 gi|307779406|gb|ADN93984.1| RNA polymerase II [Epeoloides coecutiens]
 gi|307779408|gb|ADN93985.1| RNA polymerase II [Osiris sp. JS-2010]
 gi|307779410|gb|ADN93986.1| RNA polymerase II [Leiopodus sp. JS-2010]
 gi|307779412|gb|ADN93987.1| RNA polymerase II [Leiopodus abnormis]
 gi|307779414|gb|ADN93988.1| RNA polymerase II [Leiopodus trochantericus]
 gi|307779422|gb|ADN93992.1| RNA polymerase II [Caenonomada sp. JS-2010]
 gi|307779424|gb|ADN93993.1| RNA polymerase II [Paratetrapedia sp. JS-2010]
 gi|307779426|gb|ADN93994.1| RNA polymerase II [Tapinotaspidini sp. JS-2010]
 gi|307779428|gb|ADN93995.1| RNA polymerase II [Tapinotaspoides sp. JS-2010]
 gi|307779430|gb|ADN93996.1| RNA polymerase II [Arhysoceble sp. JS-2010]
 gi|307779432|gb|ADN93997.1| RNA polymerase II [Tetrapedia maura]
 gi|307779434|gb|ADN93998.1| RNA polymerase II [Coelioxoides sp. JS-2010]
 gi|307779436|gb|ADN93999.1| RNA polymerase II [Tetrapedia sp. JS-2010]
 gi|307779438|gb|ADN94000.1| RNA polymerase II [Tetrapedia cf. diversipes JS-2010]
 gi|307779440|gb|ADN94001.1| RNA polymerase II [Coelioxoides waltheriae]
 gi|307779442|gb|ADN94002.1| RNA polymerase II [Promelitta alboclypeata]
 gi|307779444|gb|ADN94003.1| RNA polymerase II [Neofidelia sp. JS-2010]
 gi|307779446|gb|ADN94004.1| RNA polymerase II [Pararhophites quadratus]
 gi|307779448|gb|ADN94005.1| RNA polymerase II [Trachusa larreae]
 gi|307779450|gb|ADN94006.1| RNA polymerase II [Dianthidium subparvum]
 gi|307779452|gb|ADN94007.1| RNA polymerase II [Paranthidium jugatorium]
 gi|307779454|gb|ADN94008.1| RNA polymerase II [Anthidiellum notatum]
 gi|307779456|gb|ADN94009.1| RNA polymerase II [Anthidium porterae]
 gi|307779458|gb|ADN94010.1| RNA polymerase II [Dioxys pomonae]
 gi|307779460|gb|ADN94011.1| RNA polymerase II [Trichothurgus herbsti]
 gi|307779462|gb|ADN94012.1| RNA polymerase II [Microthurge sp. JS-2010]
 gi|307779464|gb|ADN94013.1| RNA polymerase II [Stelis linsleyi]
 gi|307779466|gb|ADN94014.1| RNA polymerase II [Megachile angelarum]
 gi|307779468|gb|ADN94015.1| RNA polymerase II [Coelioxys alternata]
 gi|307779470|gb|ADN94016.1| RNA polymerase II [Megachile ericetorum]
 gi|307779474|gb|ADN94018.1| RNA polymerase II [Heriades crucifer]
 gi|307779476|gb|ADN94019.1| RNA polymerase II [Osmia lignaria]
 gi|307779478|gb|ADN94020.1| RNA polymerase II [Chelostoma californicum]
 gi|307779480|gb|ADN94021.1| RNA polymerase II [Ashmeadiella aridula]
 gi|307779482|gb|ADN94022.1| RNA polymerase II [Hoplosmia scutellaris]
 gi|307779486|gb|ADN94024.1| RNA polymerase II [Protosmia rubifloris]
 gi|307779488|gb|ADN94025.1| RNA polymerase II [Hoplitis albifrons]
 gi|307779492|gb|ADN94027.1| RNA polymerase II [Sphecodopsis capensis]
 gi|307779498|gb|ADN94030.1| RNA polymerase II [Pasites maculatus]
 gi|307779506|gb|ADN94034.1| RNA polymerase II [Ammobatoides luctuosus]
 gi|307779512|gb|ADN94037.1| RNA polymerase II [Neopasites cressoni]
 gi|307779514|gb|ADN94038.1| RNA polymerase II [Biastes truncatus]
 gi|307779516|gb|ADN94039.1| RNA polymerase II [Triopasites penniger]
 gi|307779518|gb|ADN94040.1| RNA polymerase II [Brachynomada sp. JS-2010]
 gi|307779520|gb|ADN94041.1| RNA polymerase II [Brachynomada margaretae]
 gi|307779522|gb|ADN94042.1| RNA polymerase II [Caenoprosopina holmbergi]
 gi|307779524|gb|ADN94043.1| RNA polymerase II [Caenoprosopis crabronina]
 gi|307779526|gb|ADN94044.1| RNA polymerase II [Odyneropsis sp. JS-2010]
 gi|307779528|gb|ADN94045.1| RNA polymerase II [Epeolus scutellaris]
 gi|307779532|gb|ADN94047.1| RNA polymerase II [Doeringiella sp. JS-2010]
 gi|307779534|gb|ADN94048.1| RNA polymerase II [Epeolus sp. JS-2010]
 gi|307779536|gb|ADN94049.1| RNA polymerase II [Rhinepeolus rufiventris]
 gi|307779538|gb|ADN94050.1| RNA polymerase II [Epeolus variegatus]
 gi|307779540|gb|ADN94051.1| RNA polymerase II [Hexepeolus rhodogyne]
 gi|307779542|gb|ADN94052.1| RNA polymerase II [Neolarra orbiculata]
 gi|307779544|gb|ADN94053.1| RNA polymerase II [Nomada maculata]
 gi|307779546|gb|ADN94054.1| RNA polymerase II [Nomada signata]
 gi|307779548|gb|ADN94055.1| RNA polymerase II [Townsendiella sp. JS-2010]
 gi|307779550|gb|ADN94056.1| RNA polymerase II [Braunsapis madecassella]
 gi|307779568|gb|ADN94065.1| RNA polymerase II [Manuelia gayatina]
 gi|323387785|gb|ADX60043.1| RNA polymerase II [Samba fasciata]
 gi|339521056|gb|AEJ83938.1| RNA polymerase II [Conanthalictus wilmattae]
 gi|409151570|gb|AFV15700.1| RNA polymerase II, partial [Conanthalictus wilmattae]
 gi|409151590|gb|AFV15710.1| RNA polymerase II, partial [Goeletapis peruensis]
 gi|409151646|gb|AFV15738.1| RNA polymerase II, partial [Protodufourea parca]
 gi|409151650|gb|AFV15740.1| RNA polymerase II, partial [Penapis penai]
 gi|409151652|gb|AFV15741.1| RNA polymerase II, partial [Penapis toroi]
 gi|409151696|gb|AFV15763.1| RNA polymerase II, partial [Xeralictus bicuspidariae]
 gi|409151698|gb|AFV15764.1| RNA polymerase II, partial [Xeralictus timberlakei]
          Length = 280

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|62911563|gb|AAY21412.1| RNA polymerase II [Ctenoplectra albolimbata]
          Length = 280

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|317417232|emb|CBI70646.1| RNA polymerase II [Triplectidina nigricornis]
          Length = 267

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/313 (78%), Positives = 260/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +G+KGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGAKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMG R
Sbjct: 255 TPSEFYFHAMGRR 267



 Score =  135 bits (339), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            G R
Sbjct: 265  GRR 267


>gi|317417206|emb|CBI70633.1| RNA polymerase II [Nectopsyche argentata]
          Length = 267

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/313 (78%), Positives = 260/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNVIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTVVN WLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNTWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|307779484|gb|ADN94023.1| RNA polymerase II [Afroheriades sp. CJP-2008]
          Length = 280

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|62911627|gb|AAY21444.1| RNA polymerase II [Megachile pugnata]
          Length = 277

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 15  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 74

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 75  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 134

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 135 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 188

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 189 ----------------------------------------NTLRQTFENQVNRILNDARD 208

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 209 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 268

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 269 IKDDYGPES 277



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 240  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 277


>gi|317417294|emb|CBI70677.1| RNA polymerase II [Leptocerina spinigera]
          Length = 267

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/313 (78%), Positives = 260/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHP +ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPXEEDDGPYKWISPGDTKVMVEHGDLIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ +IKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQNSIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|317417154|emb|CBI70607.1| RNA polymerase II [Aphilorheithrus decoratus]
          Length = 267

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/313 (78%), Positives = 258/313 (82%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G Y+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDEGAYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTY EIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYQEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|62911733|gb|AAY21497.1| RNA polymerase II [Macrotera echinocacti]
          Length = 280

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/309 (79%), Positives = 256/309 (82%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+ EPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMEXEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|317417288|emb|CBI70674.1| RNA polymerase II [Parasetodes sudanensis]
          Length = 267

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/313 (79%), Positives = 258/313 (82%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHI  LELGH+  GRFYGNIQTVVNNWLLLEG             
Sbjct: 61  GILCKKTLGTSAGSLLHIXMLELGHDTAGRFYGNIQTVVNNWLLLEG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD GPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDXGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD GPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDXGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|194460383|gb|ACF71866.1| RNA polymerase II [Euglossa cognata]
          Length = 263

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 86  DGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVV 145
           DGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+V
Sbjct: 1   DGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMV 60

Query: 146 EHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIG 205
           EHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGIG
Sbjct: 61  EHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIG 120

Query: 206 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQM 265
           DTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                    
Sbjct: 121 DTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG-------------------- 160

Query: 266 AIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 325
                                     NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN
Sbjct: 161 --------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 194

Query: 326 NLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 385
           NLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE
Sbjct: 195 NLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 254

Query: 386 NSYLAGLTP 394
           NSYLAG TP
Sbjct: 255 NSYLAGXTP 263



 Score =  112 bits (281), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/52 (96%), Positives = 51/52 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 1060
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG TP
Sbjct: 212  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGXTP 263


>gi|62911671|gb|AAY21466.1| RNA polymerase II [Stigmus fulvipes]
          Length = 280

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQIMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTVV
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVV 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|307779584|gb|ADN94073.1| RNA polymerase II [Xylocopa fimbriata]
          Length = 280

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|62911519|gb|AAY21390.1| RNA polymerase II [Agapostemon tyleri]
 gi|62911633|gb|AAY21447.1| RNA polymerase II [Dieunomia nevadensis]
 gi|62911653|gb|AAY21457.1| RNA polymerase II [Pseudapis unidentata]
 gi|307779320|gb|ADN93941.1| RNA polymerase II [Epiclopus gayi]
 gi|307779322|gb|ADN93942.1| RNA polymerase II [Ericrocis lata]
 gi|307779324|gb|ADN93943.1| RNA polymerase II [Mesonychium asteria]
 gi|307779326|gb|ADN93944.1| RNA polymerase II [Mesoplia rufipes]
 gi|307779328|gb|ADN93945.1| RNA polymerase II [Hopliphora velutina]
 gi|307779332|gb|ADN93947.1| RNA polymerase II [Ctenioschelus goryi]
 gi|307779404|gb|ADN93983.1| RNA polymerase II [Parepeolus aterrimus]
 gi|307779416|gb|ADN93989.1| RNA polymerase II [Rhathymus sp. JS-2010]
 gi|307779420|gb|ADN93991.1| RNA polymerase II [Rhathymus unicolor]
 gi|339521052|gb|AEJ83936.1| RNA polymerase II [Mexalictus arizonensis]
 gi|339521054|gb|AEJ83937.1| RNA polymerase II [Nomioides facilis]
 gi|339521058|gb|AEJ83939.1| RNA polymerase II [Augochlorella pomoniella]
 gi|339521061|gb|AEJ83940.1| RNA polymerase II [Lasioglossum hybodinum]
 gi|339521063|gb|AEJ83941.1| RNA polymerase II [Augochloropsis metallica]
 gi|339521065|gb|AEJ83942.1| RNA polymerase II [Sphecodes ranunculi]
 gi|339521067|gb|AEJ83943.1| RNA polymerase II [Ruizantheda mutabilis]
 gi|339521069|gb|AEJ83944.1| RNA polymerase II [Patellapis abessinica]
 gi|409151536|gb|AFV15683.1| RNA polymerase II, partial [Agapostemon leunculus]
 gi|409151538|gb|AFV15684.1| RNA polymerase II, partial [Agapostemon tyleri]
 gi|409151540|gb|AFV15685.1| RNA polymerase II, partial [Patellapis joffrei]
 gi|409151542|gb|AFV15686.1| RNA polymerase II, partial [Lasioglossum lithuscum]
 gi|409151544|gb|AFV15687.1| RNA polymerase II, partial [Augochloropsis metallica]
 gi|409151546|gb|AFV15688.1| RNA polymerase II, partial [Augochlorella pomoniella]
 gi|409151548|gb|AFV15689.1| RNA polymerase II, partial [Cellariella brooksi]
 gi|409151550|gb|AFV15690.1| RNA polymerase II, partial [Patellapis coccinea]
 gi|409151552|gb|AFV15691.1| RNA polymerase II, partial [Lasioglossum florale]
 gi|409151554|gb|AFV15692.1| RNA polymerase II, partial [Lasioglossum lanarium]
 gi|409151556|gb|AFV15693.1| RNA polymerase II, partial [Patellapis (Patellapis) sp. n. 114
           JG-2012]
 gi|409151558|gb|AFV15694.1| RNA polymerase II, partial [Patellapis (Chaetalictus) sp. 2
           JG-2012]
 gi|409151560|gb|AFV15695.1| RNA polymerase II, partial [Patellapis minima]
 gi|409151562|gb|AFV15696.1| RNA polymerase II, partial [Patellapis (Chaetalictus) sp. n. 66
           JG-2012]
 gi|409151564|gb|AFV15697.1| RNA polymerase II, partial [Caenohalictus sp. 2 JG-2011]
 gi|409151566|gb|AFV15698.1| RNA polymerase II, partial [Caenohalictus sp. 3 JG-2011]
 gi|409151568|gb|AFV15699.1| RNA polymerase II, partial [Corynura patagonica]
 gi|409151574|gb|AFV15702.1| RNA polymerase II, partial [Lasioglossum zephyrum]
 gi|409151576|gb|AFV15703.1| RNA polymerase II, partial [Dinagapostemon sp. 1 JG-2011]
 gi|409151578|gb|AFV15704.1| RNA polymerase II, partial [Dinagapostemon sp. 2 JG-2011]
 gi|409151586|gb|AFV15708.1| RNA polymerase II, partial [Eupetersia seyrigi]
 gi|409151588|gb|AFV15709.1| RNA polymerase II, partial [Lasioglossum calceatum]
 gi|409151592|gb|AFV15711.1| RNA polymerase II, partial [Halictus quadricinctus]
 gi|409151594|gb|AFV15712.1| RNA polymerase II, partial [Habralictus sp. JG-2011]
 gi|409151596|gb|AFV15713.1| RNA polymerase II, partial [Halictus tripartitus]
 gi|409151598|gb|AFV15714.1| RNA polymerase II, partial [Lasioglossum lustrans]
 gi|409151600|gb|AFV15715.1| RNA polymerase II, partial [Lasioglossum megastigmum]
 gi|409151604|gb|AFV15717.1| RNA polymerase II, partial [Lasioglossum athabascense]
 gi|409151606|gb|AFV15718.1| RNA polymerase II, partial [Lasioglossum scitulum]
 gi|409151608|gb|AFV15719.1| RNA polymerase II, partial [Lasioglossum zonulum]
 gi|409151610|gb|AFV15720.1| RNA polymerase II, partial [Patellapis malachurina]
 gi|409151612|gb|AFV15721.1| RNA polymerase II, partial [Patellapis (Lomatalictus) sp. JG-2011]
 gi|409151614|gb|AFV15722.1| RNA polymerase II, partial [Patellapis castanea]
 gi|409151616|gb|AFV15723.1| RNA polymerase II, partial [Patellapis inelegans]
 gi|409151618|gb|AFV15724.1| RNA polymerase II, partial [Patellapis fisheri]
 gi|409151620|gb|AFV15725.1| RNA polymerase II, partial [Megalopta genalis]
 gi|409151622|gb|AFV15726.1| RNA polymerase II, partial [Mexalictus arizonensis]
 gi|409151624|gb|AFV15727.1| RNA polymerase II, partial [Neocorynura discolor]
 gi|409151626|gb|AFV15728.1| RNA polymerase II, partial [Nomioides facilis]
 gi|409151628|gb|AFV15729.1| RNA polymerase II, partial [Lipotriches australica]
 gi|409151630|gb|AFV15730.1| RNA polymerase II, partial [Dieunomia nevadensis]
 gi|409151632|gb|AFV15731.1| RNA polymerase II, partial [Nomioides tumidus]
 gi|409151634|gb|AFV15732.1| RNA polymerase II, partial [Dieunomia triangulifera]
 gi|409151636|gb|AFV15733.1| RNA polymerase II, partial [Patellapis braunsella]
 gi|409151638|gb|AFV15734.1| RNA polymerase II, partial [Lasioglossum hybodinum]
 gi|409151642|gb|AFV15736.1| RNA polymerase II, partial [Patellapis cf. minutior n. JG-2011]
 gi|409151644|gb|AFV15737.1| RNA polymerase II, partial [Patellapis sp. n. 10 JG-2011]
 gi|409151648|gb|AFV15739.1| RNA polymerase II, partial [Patellapis (Pachyhalictus) sp. JG-2012]
 gi|409151654|gb|AFV15742.1| RNA polymerase II, partial [Pseudagapostemon brasiliensis]
 gi|409151656|gb|AFV15743.1| RNA polymerase II, partial [Pseudagapostemon pissisi]
 gi|409151658|gb|AFV15744.1| RNA polymerase II, partial [Pseudapis unidentata]
 gi|409151660|gb|AFV15745.1| RNA polymerase II, partial [Parathrincostoma seyrigi]
 gi|409151664|gb|AFV15747.1| RNA polymerase II, partial [Ruizanthedella mutabilis]
 gi|409151666|gb|AFV15748.1| RNA polymerase II, partial [Ruizantheda proxima]
 gi|409151668|gb|AFV15749.1| RNA polymerase II, partial [Sphecodes autumnalis]
 gi|409151670|gb|AFV15750.1| RNA polymerase II, partial [Sphecodes clematidis]
 gi|409151672|gb|AFV15751.1| RNA polymerase II, partial [Sphecodes confertus]
 gi|409151674|gb|AFV15752.1| RNA polymerase II, partial [Sphecodes ruficrus]
 gi|409151676|gb|AFV15753.1| RNA polymerase II, partial [Sphecodes ranunculi]
 gi|409151684|gb|AFV15757.1| RNA polymerase II, partial [Thrinchostoma kandti]
 gi|409151686|gb|AFV15758.1| RNA polymerase II, partial [Thrinchostoma lemuriae]
 gi|409151688|gb|AFV15759.1| RNA polymerase II, partial [Thrincohalictus prognathus]
 gi|409151690|gb|AFV15760.1| RNA polymerase II, partial [Thrinchostoma torridum]
 gi|409151692|gb|AFV15761.1| RNA polymerase II, partial [Thrinchostoma (Diagonozus) sp. JG-2012]
 gi|409151694|gb|AFV15762.1| RNA polymerase II, partial [Halictus vestitus]
 gi|409151700|gb|AFV15765.1| RNA polymerase II, partial [Patellapis abessinica]
 gi|409151702|gb|AFV15766.1| RNA polymerase II, partial [Patellapis andreniformis]
 gi|409151704|gb|AFV15767.1| RNA polymerase II, partial [Patellapis zacephala]
 gi|409151706|gb|AFV15768.1| RNA polymerase II, partial [Patellapis (Zonalictus) sp. high
           elevation JG-2012]
 gi|409151708|gb|AFV15769.1| RNA polymerase II, partial [Patellapis albofasciata]
 gi|409151710|gb|AFV15770.1| RNA polymerase II, partial [Patellapis vittata]
          Length = 280

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEP+PG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPSPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|307779418|gb|ADN93990.1| RNA polymerase II [Nanorhathymus sp. JS-2010]
          Length = 280

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEP+PG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPSPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|126508342|gb|ABO15354.1| RNA polymerase II [Colocistis crassa]
          Length = 268

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 6   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 65

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 66  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 125

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 126 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 179

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 180 ----------------------------------------NTLRQTFENQVNRILNDARD 199

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 200 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 259

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 260 IKDDYGPES 268



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 231  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 268


>gi|307779578|gb|ADN94070.1| RNA polymerase II [Xylocopa sp. JS-2010]
          Length = 280

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|307779390|gb|ADN93976.1| RNA polymerase II [Melipona sp. JS-2010]
 gi|307779392|gb|ADN93977.1| RNA polymerase II [Tetragonula carbonaria]
 gi|307779394|gb|ADN93978.1| RNA polymerase II [Meliponula ferruginea]
 gi|307779396|gb|ADN93979.1| RNA polymerase II [Plebeina hildebrandti]
 gi|307779398|gb|ADN93980.1| RNA polymerase II [Scaptotrigona hellwegeri]
 gi|307779400|gb|ADN93981.1| RNA polymerase II [Lestrimelitta sp. JS-2010]
 gi|307779490|gb|ADN94026.1| RNA polymerase II [Oreopasites barbarae]
 gi|307779494|gb|ADN94028.1| RNA polymerase II [Ammobates sp. JS-2010]
 gi|307779562|gb|ADN94062.1| RNA polymerase II [Ceratina sp. JS-2010]
 gi|307779564|gb|ADN94063.1| RNA polymerase II [Ceratina sp. JS-2010]
 gi|307779566|gb|ADN94064.1| RNA polymerase II [Ceratina cyanea]
 gi|307779570|gb|ADN94066.1| RNA polymerase II [Xylocopa virginica]
 gi|307779572|gb|ADN94067.1| RNA polymerase II [Xylocopa tabaniformis]
 gi|307779574|gb|ADN94068.1| RNA polymerase II [Xylocopa muscaria]
 gi|307779576|gb|ADN94069.1| RNA polymerase II [Xylocopa iris]
 gi|307779580|gb|ADN94071.1| RNA polymerase II [Xylocopa pubescens]
 gi|307779582|gb|ADN94072.1| RNA polymerase II [Xylocopa violacea]
 gi|307779586|gb|ADN94074.1| RNA polymerase II [Xylocopa californica arizonensis]
          Length = 280

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|409151662|gb|AFV15746.1| RNA polymerase II, partial [Rhinetula denticrus]
          Length = 280

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEP+PG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPSPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|317417226|emb|CBI70643.1| RNA polymerase II [Notoperata sp. NHRS CW8]
          Length = 267

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/313 (79%), Positives = 258/313 (82%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPG TKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGXTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLLEG             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLEG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAH M+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHXMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMG R
Sbjct: 255 TPSEFYFHAMGRR 267



 Score =  135 bits (339), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            G R
Sbjct: 265  GRR 267


>gi|126508338|gb|ABO15352.1| RNA polymerase II [Parachartergus fraternus]
          Length = 269

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 7   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 66

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 67  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 126

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 127 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 180

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 181 ----------------------------------------NTLRQTFENQVNRILNDARD 200

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 201 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 260

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 261 IKDDYGPES 269



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 232  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 269


>gi|317417208|emb|CBI70634.1| RNA polymerase II [Hudsonema flaminii]
          Length = 267

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/313 (78%), Positives = 260/313 (83%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED  PY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDKPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCK++LGTS+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKRTLGTSAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILN+ARDKTGGSAKKSLTE+NNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNNARDKTGGSAKKSLTEFNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|62911715|gb|AAY21488.1| RNA polymerase II [Protandrena nanulus]
 gi|62911739|gb|AAY21500.1| RNA polymerase II [Protandrena verbesinae]
 gi|71480570|gb|AAZ32210.1| RNA polymerase II large subunit [Protandrena verbesinae]
          Length = 280

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEP+PG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPSPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFEN+VNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENRVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|126508334|gb|ABO15350.1| RNA polymerase II [Vespula squamosa]
          Length = 270

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 8   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 67

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 68  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 127

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 128 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 181

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 182 ----------------------------------------NTLRQTFENQVNRILNDARD 201

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 202 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 261

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 262 IKDDYGPES 270



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 233  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 270


>gi|62911555|gb|AAY21408.1| RNA polymerase II [Colletes inaequalis]
          Length = 280

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGP+S
Sbjct: 272 IKDDYGPKS 280



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/38 (94%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGP+S
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPKS 280


>gi|317417210|emb|CBI70635.1| RNA polymerase II [Triplectides nigripennis]
          Length = 267

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/313 (78%), Positives = 258/313 (82%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKP WTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPXWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGHEV GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHEVAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIG GDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGXGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQ NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQXNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQ NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQXNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|409151572|gb|AFV15701.1| RNA polymerase II, partial [Lasioglossum nicolli]
          Length = 280

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEP+PG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPSPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|62911737|gb|AAY21499.1| RNA polymerase II [Protandrena mexicanorum]
          Length = 278

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 16  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 75

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 76  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 135

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEP+PG      
Sbjct: 136 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPSPG------ 189

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFEN+VNRILNDARD
Sbjct: 190 ----------------------------------------NTLRQTFENRVNRILNDARD 209

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 210 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 269

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 270 IKDDYGPES 278



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 241  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 278


>gi|409151640|gb|AFV15735.1| RNA polymerase II, partial [Patellapis montagui]
          Length = 276

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/309 (79%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 14  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 73

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 74  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 133

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEP+PG      
Sbjct: 134 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPSPG------ 187

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 188 ----------------------------------------NTLRQTFENQVNRILNDARD 207

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 208 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 267

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 268 IKDDYGPES 276



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 239  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 276


>gi|62911657|gb|AAY21459.1| RNA polymerase II [Rophites algirus]
 gi|62911677|gb|AAY21469.1| RNA polymerase II [Systropha curvicornis]
 gi|409151678|gb|AFV15754.1| RNA polymerase II, partial [Sphecodosoma pratti]
 gi|409151680|gb|AFV15755.1| RNA polymerase II, partial [Systropha curvicornis]
 gi|409151682|gb|AFV15756.1| RNA polymerase II, partial [Systropha planidens]
          Length = 280

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/309 (79%), Positives = 256/309 (82%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED  
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDS 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|307779560|gb|ADN94061.1| RNA polymerase II [Ceratina sp. JS-2010]
          Length = 280

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/309 (79%), Positives = 256/309 (82%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTY EIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYTEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|307779558|gb|ADN94060.1| RNA polymerase II [Ceratina sp. JS-2010]
          Length = 280

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/309 (79%), Positives = 256/309 (82%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYTWISPGDTKVMVEHGELVMGILCKKTLGTSTGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|157472184|gb|ABV57381.1| RNA polymerase II [Melitturga caudata]
          Length = 286

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/307 (79%), Positives = 255/307 (83%), Gaps = 46/307 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 26  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 85

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 86  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 145

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 146 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 199

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 200 ----------------------------------------NTLRQTFENQVNRILNDARD 219

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 220 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 279

Query: 372 IKDDYGP 378
           IKDDYGP
Sbjct: 280 IKDDYGP 286



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/36 (97%), Positives = 36/36 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGP 1044
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGP
Sbjct: 251  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGP 286



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/25 (92%), Positives = 25/25 (100%)

Query: 1507 PVMGIVQDTLTAVRKMTKRDVFLDK 1531
            PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 2    PVMGIVQDTLTAVRKMTKRDVFIEK 26


>gi|324500036|gb|ADY40031.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
          Length = 1840

 Score =  505 bits (1300), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 252/428 (58%), Positives = 308/428 (71%), Gaps = 53/428 (12%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           ++M++LM +P W+ K+PQP ILKPK LWTGKQ+FSLIIPG VN+   HSTHPDDE++G Y
Sbjct: 572 RLMDLLMHMPDWNAKIPQPAILKPKRLWTGKQLFSLIIPGEVNVELNHSTHPDDENAGEY 631

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           +WISPGDTKV+VE G LL GI+C +++G S+GSLLH+  LELG +V  +FY  IQT  N 
Sbjct: 632 KWISPGDTKVLVERGVLLSGIICSRTVGRSAGSLLHVVTLELGFDVAAQFYSQIQTTANA 691

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL EG                                               +IGI D 
Sbjct: 692 WLLAEGQ----------------------------------------------TIGIADA 705

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD  TY  IQ  IKKAK DV+EVI++A    ++ T GNTL QTFE+++N ILN+ARD+T
Sbjct: 706 IADRATYSHIQETIKKAKMDVVEVIERARKDSIKVTRGNTLLQTFESKINNILNNARDRT 765

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA++SL+  NN KAMVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHFI+
Sbjct: 766 GSSAQRSLSADNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIR 825

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DD GPE++GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRL+KAMES+M
Sbjct: 826 DDCGPEAKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLMKAMESIM 885

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           V+YD TVRN++G+++QL YGEDGL G  VE+Q + T+  +   FE K++ D       L 
Sbjct: 886 VNYDGTVRNALGEVVQLSYGEDGLDGTWVENQTMPTMRPTTALFEKKFKMD-------LL 938

Query: 494 NVSSLRRV 501
           + ++LRR+
Sbjct: 939 DKTALRRL 946



 Score =  455 bits (1170), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/507 (47%), Positives = 328/507 (64%), Gaps = 46/507 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G D +SKQA +NATLL   L+RSTLC+K +A  ++L+++ FEWL+GEIE+RF +A   
Sbjct: 1036 VRGGDSISKQAQDNATLLMCMLLRSTLCSKRMAVEHKLNADGFEWLLGEIESRFNRAIVY 1095

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1096 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINVSKKPK----- 1148

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV---FLFQVTANTAIYYDPDPQ 1107
                    TPS   F A G     + + V+ A  +   +    L +VT++T I YDPDP 
Sbjct: 1149 --------TPSLTIFLAPG-----LGSDVRRANDLQCRMEHCTLRKVTSSTMIIYDPDPM 1195

Query: 1108 NTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
            NTV+ ED+E++NV++E+ + +P+  SPWLLRIELD KRM D+KL++E I+EKI  GFGDD
Sbjct: 1196 NTVVEEDREWLNVFFELFNLNPSGTSPWLLRIELDHKRMVDQKLSLEMIAEKIRDGFGDD 1255

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIE 1227
            L     DDNAEKL+LR+R+    D K +D  +A  +  D+  LRC+   MLS++TLQGIE
Sbjct: 1256 LMVTHTDDNAEKLILRLRLSEQHDKKSEDINEASVR-NDEAVLRCLGVTMLSNLTLQGIE 1314

Query: 1228 AIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDI 1287
            +I KVY+H      +KR + T  G     A+W+LETDGT+L KVLSE D+D  RT +NDI
Sbjct: 1315 SITKVYVHNAVEPERKRAVETPDGGLMQPAEWILETDGTALAKVLSEPDIDATRTTTNDI 1374

Query: 1288 CEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 1347
            CE+F+VLGIEA RK++E+EMN V+ F G YVNYRHLALLCDVMTAKG+LMAI+RHGINRQ
Sbjct: 1375 CEVFEVLGIEAARKAIEREMNHVISFDGSYVNYRHLALLCDVMTAKGYLMAISRHGINRQ 1434

Query: 1348 DTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1407
            + GALMRCSFEETVD+L +AA H E D ++GVSENI++GQL R GTGCFDLL+D E CK 
Sbjct: 1435 EMGALMRCSFEETVDILTEAAVHTEQDFIKGVSENIMLGQLARGGTGCFDLLIDVENCKQ 1494

Query: 1408 GIEIPLATGMMGGPAGMFFGSAATPSS 1434
            G+++  A  +      ++    +  +S
Sbjct: 1495 GMQLQPACPLSASTRSLWLSGNSPAAS 1521



 Score =  192 bits (489), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 98/185 (52%), Positives = 131/185 (70%), Gaps = 7/185 (3%)

Query: 773  LCKIIFVLSV---RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            +C++  VL +   RK++E+EMN V+ F G YVNYRHLALLCDVMTAKG+LMAI+RHGINR
Sbjct: 1374 ICEVFEVLGIEAARKAIEREMNHVISFDGSYVNYRHLALLCDVMTAKGYLMAISRHGINR 1433

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            Q+ GALMRCSFEETVD+L +AA H E D ++GVSENI++GQL R GTGCFDLL+D E CK
Sbjct: 1434 QEMGALMRCSFEETVDILTEAAVHTEQDFIKGVSENIMLGQLARGGTGCFDLLIDVENCK 1493

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAM-TPGG-- 946
             G+++  A  +      ++  S  +P++    +TP   S  +    ++P +A+ TP G  
Sbjct: 1494 QGMQLQPACPLSASTRSLWL-SGNSPAASRAMVTPAYASERSCTPNITPTSAVFTPSGIS 1552

Query: 947  PGFSP 951
             GFSP
Sbjct: 1553 EGFSP 1557



 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/231 (42%), Positives = 134/231 (58%), Gaps = 21/231 (9%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFI+DD GPE++GFVENSYLAG
Sbjct: 784  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIRDDCGPEAKGFVENSYLAG 843

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEF 1117
            LTPSEFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N +     E 
Sbjct: 844  LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLMKAMESIMVNYDGTVRNAL----GEV 899

Query: 1118 VNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNA 1177
            V + Y     D T +    +        + +KK  M+ + +         L  ++ +D  
Sbjct: 900  VQLSYGEDGLDGTWVENQTMPTMRPTTALFEKKFKMDLLDKTA-------LRRLYTEDVV 952

Query: 1178 EKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCI----EANMLSDMTLQ 1224
            ++L   + +    + ++Q E + +  +ED   LR I    EAN++    LQ
Sbjct: 953  KELADPLEV----EKQLQAEWNQL--VEDRRLLRKIFRRGEANVVLPCNLQ 997



 Score =  130 bits (326), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 101/166 (60%), Gaps = 35/166 (21%)

Query: 592  GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
            GYIQRRL+KAMES+MV+YD TVRN++G+++QL YGEDGL G  VE+Q + T+  +   FE
Sbjct: 871  GYIQRRLMKAMESIMVNYDGTVRNALGEVVQLSYGEDGLDGTWVENQTMPTMRPTTALFE 930

Query: 652  DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             K++ D  ++  LRR++ EDV++EL    D + E+EK                       
Sbjct: 931  KKFKMDLLDKTALRRLYTEDVVKEL---ADPL-EVEK----------------------- 963

Query: 712  MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIF 757
                    +L+ EW +L EDR  LR+IF  GE+NVVLPCNL  +I+
Sbjct: 964  --------QLQAEWNQLVEDRRLLRKIFRRGEANVVLPCNLQRMIW 1001



 Score =  125 bits (314), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 67/77 (87%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E+EMN V+ F G YVNYRHLALLCDVMTAKG+LMAI+RHGINRQ+ GALMRCSFEETV
Sbjct: 1389 AIEREMNHVISFDGSYVNYRHLALLCDVMTAKGYLMAISRHGINRQEMGALMRCSFEETV 1448

Query: 576  DVLMDAAAHAEADPMRG 592
            D+L +AA H E D ++G
Sbjct: 1449 DILTEAAVHTEQDFIKG 1465



 Score =  124 bits (312), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 96/165 (58%), Gaps = 29/165 (17%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT++T I YDPDP NTV+ ED+E++NV++E+ + +P+  SPWLLRIELD KRM D+K
Sbjct: 1179 LRKVTSSTMIIYDPDPMNTVVEEDREWLNVFFELFNLNPSGTSPWLLRIELDHKRMVDQK 1238

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L++E I+EKI  GFGDDL                                 DDNAEKL+L
Sbjct: 1239 LSLEMIAEKIRDGFGDDLMV----------------------------THTDDNAEKLIL 1270

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEETDRSFVKVDFVE 1693
            R+R+    D K +D  +A  +  D+  LRC+  T  S + +  +E
Sbjct: 1271 RLRLSEQHDKKSEDINEASVR-NDEAVLRCLGVTMLSNLTLQGIE 1314



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 41/50 (82%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           E+ I+LGMDP+FARPDWM++  LPVPPL+VRPAV   GSARNQ+ + + L
Sbjct: 244 EDCIVLGMDPRFARPDWMIIQELPVPPLAVRPAVATFGSARNQDDLTHKL 293



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I + PRQ+ITPQ N+PVMGIVQD LTAV  +TKRD F++       + + PD  N  
Sbjct: 528  IAEIAMVPRQLITPQANKPVMGIVQDALTAVYMLTKRDTFIEAARLMDLLMHMPD-WNAK 586

Query: 1549 IPE 1551
            IP+
Sbjct: 587  IPQ 589


>gi|194460339|gb|ACF71844.1| RNA polymerase II [Euglossa securigera]
          Length = 264

 Score =  504 bits (1299), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 246/310 (79%), Positives = 256/310 (82%), Gaps = 46/310 (14%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGI
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPE   FV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPEXXXFV 254

Query: 385 ENSYLAGLTP 394
           ENSYLAGLTP
Sbjct: 255 ENSYLAGLTP 264



 Score =  107 bits (267), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 48/52 (92%), Positives = 49/52 (94%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 1060
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPE   FVENSYLAGLTP
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPEXXXFVENSYLAGLTP 264


>gi|71480582|gb|AAZ32216.1| RNA polymerase II large subunit [Systropha glabriventris]
          Length = 274

 Score =  504 bits (1299), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/309 (79%), Positives = 256/309 (82%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED  
Sbjct: 12  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDS 71

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 72  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 131

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 132 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 185

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 186 ----------------------------------------NTLRQTFENQVNRILNDARD 205

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 206 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 265

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 266 IKDDYGPES 274



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 237  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 274


>gi|62911539|gb|AAY21400.1| RNA polymerase II [Ceratina calcarata]
          Length = 280

 Score =  504 bits (1299), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/309 (78%), Positives = 257/309 (83%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGP+S
Sbjct: 272 IKDDYGPDS 280



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/38 (94%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGP+S
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPDS 280


>gi|62911731|gb|AAY21496.1| RNA polymerase II [Perdita californica]
          Length = 280

 Score =  504 bits (1299), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/309 (79%), Positives = 256/309 (82%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 18  KEQIMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRK TLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKXTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/38 (94%), Positives = 37/38 (97%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRK TLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKXTLPHFIKDDYGPES 280


>gi|317417218|emb|CBI70639.1| RNA polymerase II [Leptorussa darlingtoni]
          Length = 267

 Score =  504 bits (1297), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/313 (78%), Positives = 258/313 (82%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSL HIC LELGH+V GRFYGNIQTV+N WLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLXHICMLELGHDVAGRFYGNIQTVINTWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AI KAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIXKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|158632450|gb|ABW75621.1| RNA polymerase 2 [Melitta dimidiata]
          Length = 278

 Score =  504 bits (1297), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/307 (79%), Positives = 255/307 (83%), Gaps = 46/307 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHS+HPDDED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSSHPDDEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGP 378
           IKDDYGP
Sbjct: 272 IKDDYGP 278



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/36 (97%), Positives = 36/36 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGP 1044
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGP
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGP 278


>gi|307779336|gb|ADN93949.1| RNA polymerase II [Svastrides melanura]
          Length = 280

 Score =  504 bits (1297), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/309 (79%), Positives = 256/309 (82%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP F
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPLF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/38 (94%), Positives = 37/38 (97%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLP FIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPLFIKDDYGPES 280


>gi|62911573|gb|AAY21417.1| RNA polymerase II [Dufourea mulleri]
 gi|409151580|gb|AFV15705.1| RNA polymerase II, partial [Dufourea malacothricis]
 gi|409151582|gb|AFV15706.1| RNA polymerase II, partial [Dufourea mulleri]
          Length = 280

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/309 (78%), Positives = 255/309 (82%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED  
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDS 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NTWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|62911581|gb|AAY21421.1| RNA polymerase II [Halictus rubicundus]
          Length = 280

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/309 (78%), Positives = 256/309 (82%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEP+PG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPSPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYG ES
Sbjct: 272 IKDDYGSES 280



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/38 (94%), Positives = 37/38 (97%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYG ES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGSES 280


>gi|307779552|gb|ADN94057.1| RNA polymerase II [Compsomelissa keiseri]
          Length = 280

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/309 (78%), Positives = 256/309 (82%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VE G L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVERGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|307779496|gb|ADN94029.1| RNA polymerase II [Ammobates punctatus]
          Length = 280

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/309 (78%), Positives = 256/309 (82%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDY PES
Sbjct: 272 IKDDYXPES 280



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/38 (94%), Positives = 37/38 (97%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDY PES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYXPES 280


>gi|158632464|gb|ABW75628.1| RNA polymerase 2 [Hesperapis cockerelli]
 gi|158632468|gb|ABW75630.1| RNA polymerase 2 [Capicola nigerrima]
 gi|158632470|gb|ABW75631.1| RNA polymerase 2 [Capicola hantamensis]
 gi|158632472|gb|ABW75632.1| RNA polymerase 2 [Promelitta alboclypeata]
 gi|158632474|gb|ABW75633.1| RNA polymerase 2 [Dasypoda hirtipes]
 gi|158632480|gb|ABW75636.1| RNA polymerase 2 [Dasypoda pyrotricha]
 gi|158632482|gb|ABW75637.1| RNA polymerase 2 [Dasypoda pyriformis]
 gi|158632484|gb|ABW75638.1| RNA polymerase 2 [Dasypoda frieseana]
          Length = 278

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/307 (79%), Positives = 255/307 (83%), Gaps = 46/307 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGP 378
           IKDDYGP
Sbjct: 272 IKDDYGP 278



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/36 (97%), Positives = 36/36 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGP 1044
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGP
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGP 278


>gi|409151584|gb|AFV15707.1| RNA polymerase II, partial [Dufourea novaeangliae]
          Length = 280

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/309 (78%), Positives = 255/309 (82%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED  
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDS 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NTWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|307779330|gb|ADN93946.1| RNA polymerase II [Mesocheira bicolor]
          Length = 280

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/309 (78%), Positives = 256/309 (82%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEP+PG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPSPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHX 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/38 (94%), Positives = 37/38 (97%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPH IKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHXIKDDYGPES 280


>gi|317417150|emb|CBI70605.1| RNA polymerase II [Tasimia palpata]
          Length = 267

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 246/313 (78%), Positives = 257/313 (82%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+V HG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVXHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQ VEGKRIPFGFRKRTLPHFIKDD GPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQXVEGKRIPFGFRKRTLPHFIKDDXGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/63 (93%), Positives = 61/63 (96%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQ VEGKRIPFGFRKRTLPHFIKDD GPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQXVEGKRIPFGFRKRTLPHFIKDDXGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|62911551|gb|AAY21406.1| RNA polymerase II [Callomelitta antipodes]
          Length = 280

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/309 (78%), Positives = 255/309 (82%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED  
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDES 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
            Y+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  TYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|71480574|gb|AAZ32212.1| RNA polymerase II large subunit [Macronomia aureozonata]
          Length = 261

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/307 (79%), Positives = 255/307 (83%), Gaps = 46/307 (14%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           QMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY
Sbjct: 1   QMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPY 60

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           +WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NN
Sbjct: 61  KWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINN 120

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEP+PG        
Sbjct: 121 WLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPSPG-------- 172

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
                                                 NTLRQTFENQVNRILNDARDKT
Sbjct: 173 --------------------------------------NTLRQTFENQVNRILNDARDKT 194

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           GGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK
Sbjct: 195 GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 254

Query: 374 DDYGPES 380
           DDYGPES
Sbjct: 255 DDYGPES 261



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 224  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 261


>gi|194460298|gb|ACF71824.1| RNA polymerase II [Euglossa amazonica]
          Length = 259

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/305 (80%), Positives = 254/305 (83%), Gaps = 46/305 (15%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGI
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 254

Query: 385 ENSYL 389
           ENSYL
Sbjct: 255 ENSYL 259



 Score =  104 bits (259), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/47 (97%), Positives = 47/47 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 1055
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 259


>gi|313218980|emb|CBY43254.1| unnamed protein product [Oikopleura dioica]
          Length = 471

 Score =  501 bits (1291), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/415 (58%), Positives = 298/415 (71%), Gaps = 46/415 (11%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MN+++F   WDG++P P ILKP+PL+TGKQ+F L +P  VN  R HSTHPD ED+GPY+
Sbjct: 94  FMNLILFKIQWDGRLPIPAILKPRPLYTGKQLFELCLPEGVNCIRNHSTHPDSEDNGPYR 153

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            IS GDT+VV+E+G ++ GI+CKK++G SSGSL+H+ F E G +V  RF+ + Q +VN W
Sbjct: 154 HISVGDTRVVIENGKIISGIVCKKTVGASSGSLIHVMFNEKGADVTKRFFSDCQRMVNQW 213

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL+EG                                              HSIGIGDTI
Sbjct: 214 LLVEG----------------------------------------------HSIGIGDTI 227

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD  TY  IQ  I+K+K DV+EVI++AHN +L  TPGNT+R TFEN VN+ILNDARDKTG
Sbjct: 228 ADAATYKNIQAQIRKSKTDVLEVIERAHNDELVCTPGNTIRNTFENHVNKILNDARDKTG 287

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
           G A+KSL+E+NN K MVVAGSKGS INISQVIA VGQQNV G+RIPF F  R+LP F+KD
Sbjct: 288 GLAQKSLSEFNNFKQMVVAGSKGSKINISQVIAVVGQQNVSGQRIPFHFHHRSLPCFMKD 347

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D+ PES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTA+KTA TGYIQRRLIKAMES +V
Sbjct: 348 DFSPESKGFVENSYLAGLTPTEFFFHAMGGREGLIDTAIKTASTGYIQRRLIKAMESAVV 407

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
            YD TVRNS   +IQ RYGEDGL GE VE Q + ++  S + FE ++RFD S+E+
Sbjct: 408 RYDATVRNSNNNIIQFRYGEDGLAGEHVEFQNLSSIRPSDRLFERRFRFDYSDEK 462



 Score =  139 bits (350), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/112 (58%), Positives = 82/112 (73%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIA VGQQNV G+RIPF F  R+LP F+KDD+ PES+GFVENSYLAG
Sbjct: 305  VAGSKGSKINISQVIAVVGQQNVSGQRIPFHFHHRSLPCFMKDDFSPESKGFVENSYLAG 364

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            LTP+EFFFHAMGGREGLIDTA+KTA T  +   L +   +  + YD   +N+
Sbjct: 365  LTPTEFFFHAMGGREGLIDTAIKTASTGYIQRRLIKAMESAVVRYDATVRNS 416



 Score = 97.1 bits (240), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 56/75 (74%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMES +V YD TVRNS   +IQ RYGEDGL GE VE Q + ++  S + FE
Sbjct: 392 GYIQRRLIKAMESAVVRYDATVRNSNNNIIQFRYGEDGLAGEHVEFQNLSSIRPSDRLFE 451

Query: 652 DKYRFDPSNERQLRR 666
            ++RFD S+E+ LR+
Sbjct: 452 RRFRFDYSDEKNLRK 466



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 34/37 (91%)

Query: 1494 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 1530
            + PR ++TPQ+NRPVMGIVQDTLTAVRK+TKRD F++
Sbjct: 54   LVPRMVVTPQSNRPVMGIVQDTLTAVRKLTKRDTFIE 90


>gi|259016108|gb|ACV89334.1| RNA polymerase II 215kD subunit [Frankliniella fusca]
          Length = 277

 Score =  501 bits (1289), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/314 (77%), Positives = 258/314 (82%), Gaps = 46/314 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMM +LMFLPIWDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPD+ED G
Sbjct: 10  KEQMMTLLMFLPIWDGKMPQPCILKPKPLWTGKQLFSLIIPGNVNLIRTHSTHPDEEDDG 69

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+ GILCKK+LGTS+GSLLH+ FLELGHEVCG+FYGNIQTVV
Sbjct: 70  PYKWISPGDTKVMVEHGELIKGILCKKTLGTSAGSLLHVIFLELGHEVCGQFYGNIQTVV 129

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIAD QTY EIQ AIKKAK DVIEVIQKAHNM+LEPTPG      
Sbjct: 130 NNWLLLEGHSIGIGDTIADRQTYSEIQNAIKKAKADVIEVIQKAHNMELEPTPG------ 183

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 184 ----------------------------------------NTLRQTFENQVNRILNDARD 203

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 204 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 263

Query: 372 IKDDYGPESRGFVE 385
           IKDDYGPESRGFVE
Sbjct: 264 IKDDYGPESRGFVE 277



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/43 (97%), Positives = 43/43 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 1051
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE
Sbjct: 235  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 277


>gi|307779556|gb|ADN94059.1| RNA polymerase II [Exoneura bicolor]
          Length = 280

 Score =  500 bits (1288), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/309 (78%), Positives = 255/309 (82%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPK LWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKALWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VE G L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVERGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|317417256|emb|CBI70658.1| RNA polymerase II [Triplectidina nigricornis]
          Length = 267

 Score =  500 bits (1288), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/313 (77%), Positives = 257/313 (82%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGH+V G FYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHDVAGXFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HS GIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSXGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNT RQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTXRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +G+KGSNINISQVIACVGQQ VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGAKGSNINISQVIACVGQQXVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQ VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQXVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|71480580|gb|AAZ32215.1| RNA polymerase II large subunit [Conanthalictus conanthi]
          Length = 280

 Score =  500 bits (1288), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/308 (78%), Positives = 255/308 (82%), Gaps = 46/308 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPE 379
           IKD+Y PE
Sbjct: 272 IKDEYCPE 279



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/37 (91%), Positives = 36/37 (97%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPE 1045
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKD+Y PE
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDEYCPE 279


>gi|158632462|gb|ABW75627.1| RNA polymerase 2 [Hesperapis trochanterata]
          Length = 278

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/307 (79%), Positives = 254/307 (82%), Gaps = 46/307 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGP 378
           IKDDY P
Sbjct: 272 IKDDYRP 278



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/36 (94%), Positives = 35/36 (97%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGP 1044
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDY P
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYRP 278


>gi|126508296|gb|ABO15331.1| RNA polymerase II [Mischocyttarus mexicanus]
          Length = 277

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/306 (79%), Positives = 254/306 (83%), Gaps = 46/306 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQIMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYG 377
           IKDDYG
Sbjct: 272 IKDDYG 277



 Score = 79.7 bits (195), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/35 (97%), Positives = 35/35 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYG 1043
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYG
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYG 277


>gi|62911743|gb|AAY21502.1| RNA polymerase II [Rediviva saetigera]
          Length = 258

 Score =  497 bits (1280), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/304 (79%), Positives = 253/304 (83%), Gaps = 46/304 (15%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHS+HPDDED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSSHPDDEDEGPYKWISPGDTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGIGDTIADPQ
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQ 120

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
           TYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                           
Sbjct: 121 TYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG--------------------------- 153

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
                              NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 154 -------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSE 396
           TPSE
Sbjct: 255 TPSE 258



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/54 (98%), Positives = 54/54 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 1062
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 258


>gi|71480576|gb|AAZ32213.1| RNA polymerase II large subunit [Nomia tetrazonata]
          Length = 276

 Score =  497 bits (1280), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/305 (79%), Positives = 253/305 (82%), Gaps = 46/305 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEP+PG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPSPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDY 376
           IKDDY
Sbjct: 272 IKDDY 276



 Score = 77.4 bits (189), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/34 (97%), Positives = 34/34 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDY 1042
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDY
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDY 276


>gi|62911531|gb|AAY21396.1| RNA polymerase II [Bembix americana]
 gi|62911559|gb|AAY21410.1| RNA polymerase II [Caupolicana vestita]
 gi|62911571|gb|AAY21416.1| RNA polymerase II [Diphaglossa gayi]
 gi|62911577|gb|AAY21419.1| RNA polymerase II [Euryglossina globuliceps]
 gi|62911583|gb|AAY21422.1| RNA polymerase II [Hesperapis larreae]
 gi|62911585|gb|AAY21423.1| RNA polymerase II [Hesperapis regularis]
 gi|62911587|gb|AAY21424.1| RNA polymerase II [Hesperapis sp. Hesp940]
 gi|62911591|gb|AAY21426.1| RNA polymerase II [Samba griseonigra]
 gi|62911595|gb|AAY21428.1| RNA polymerase II [Hylaeus elegans]
 gi|62911603|gb|AAY21432.1| RNA polymerase II [Leioproctus irroratus]
 gi|62911639|gb|AAY21450.1| RNA polymerase II [Philanthus gibbosus]
 gi|62911643|gb|AAY21452.1| RNA polymerase II [Pachymelus peringueyi]
 gi|62911649|gb|AAY21455.1| RNA polymerase II [Paranomada velutina]
 gi|62911663|gb|AAY21462.1| RNA polymerase II [Scrapter erubescens]
 gi|62911669|gb|AAY21465.1| RNA polymerase II [Scrapter ruficornis]
 gi|62911681|gb|AAY21471.1| RNA polymerase II [Triepeolus robustus]
 gi|62911693|gb|AAY21477.1| RNA polymerase II [Zacosmia maculata]
 gi|62911701|gb|AAY21481.1| RNA polymerase II [Colletes dimidiatus]
 gi|62911703|gb|AAY21482.1| RNA polymerase II [Dasypoda visnaga]
 gi|62911721|gb|AAY21491.1| RNA polymerase II [Leioproctus sp. Lesp707]
 gi|62911745|gb|AAY21503.1| RNA polymerase II [Scrapter algoensis]
 gi|62911751|gb|AAY21506.1| RNA polymerase II [Tetralonia cinctula]
          Length = 258

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/304 (79%), Positives = 253/304 (83%), Gaps = 46/304 (15%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGIGDTIADPQ
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQ 120

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
           TYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                           
Sbjct: 121 TYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG--------------------------- 153

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
                              NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 154 -------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSE 396
           TPSE
Sbjct: 255 TPSE 258



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/54 (98%), Positives = 54/54 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 1062
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 258


>gi|62911735|gb|AAY21498.1| RNA polymerase II [Macrotera latior]
          Length = 258

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/304 (79%), Positives = 252/304 (82%), Gaps = 46/304 (15%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELVM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGIGDTIADPQ
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQ 120

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
           TYLEIQ AIKKAKEDVIEVIQKAHNM+ EPTPG                           
Sbjct: 121 TYLEIQKAIKKAKEDVIEVIQKAHNMEXEPTPG--------------------------- 153

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
                              NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 154 -------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSE 396
           TPSE
Sbjct: 255 TPSE 258



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/54 (98%), Positives = 54/54 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 1062
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 258


>gi|409151602|gb|AFV15716.1| RNA polymerase II, partial [Homalictus punctatum]
          Length = 280

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/307 (78%), Positives = 253/307 (82%), Gaps = 46/307 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEP+PG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPSPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGP 378
           IKDD  P
Sbjct: 272 IKDDMVP 278



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/36 (91%), Positives = 34/36 (94%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGP 1044
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD  P
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDMVP 278


>gi|62911709|gb|AAY21485.1| RNA polymerase II [Ericrocis lata]
 gi|62911723|gb|AAY21492.1| RNA polymerase II [Macronomia sanguinolenta]
 gi|62911747|gb|AAY21504.1| RNA polymerase II [Sphecodes sp. Spsp1055]
          Length = 258

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/304 (79%), Positives = 253/304 (83%), Gaps = 46/304 (15%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGIGDTIADPQ
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQ 120

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
           TYLEIQ AIKKAKEDVIEVIQKAHNM+LEP+PG                           
Sbjct: 121 TYLEIQKAIKKAKEDVIEVIQKAHNMELEPSPG--------------------------- 153

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
                              NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 154 -------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSE 396
           TPSE
Sbjct: 255 TPSE 258



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/54 (98%), Positives = 54/54 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 1062
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 258


>gi|62911719|gb|AAY21490.1| RNA polymerase II [Hypotrigona gribodoi]
          Length = 258

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/304 (79%), Positives = 253/304 (83%), Gaps = 46/304 (15%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGIGDTIADPQ
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQ 120

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
           TYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG                           
Sbjct: 121 TYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG--------------------------- 153

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
                              NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 154 -------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSE 396
           TPSE
Sbjct: 255 TPSE 258



 Score =  118 bits (295), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/54 (98%), Positives = 54/54 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 1062
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 258


>gi|62911741|gb|AAY21501.1| RNA polymerase II [Pseudopanurgus fraterculus]
          Length = 258

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/304 (79%), Positives = 253/304 (83%), Gaps = 46/304 (15%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELVM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGIGDTIADPQ
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQ 120

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
           TYLEIQ AIKKAKEDVIEVIQKAHNM+LEP+PG                           
Sbjct: 121 TYLEIQKAIKKAKEDVIEVIQKAHNMELEPSPG--------------------------- 153

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
                              NTLRQTFEN+VNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 154 -------------------NTLRQTFENRVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSE 396
           TPSE
Sbjct: 255 TPSE 258



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/54 (98%), Positives = 54/54 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 1062
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 258


>gi|194460448|gb|ACF71898.1| RNA polymerase II [Eufriesea mussitans]
          Length = 259

 Score =  495 bits (1274), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/305 (79%), Positives = 251/305 (82%), Gaps = 46/305 (15%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FS IIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSSIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGI
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPE  GFV
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPEXXGFV 254

Query: 385 ENSYL 389
           ENSYL
Sbjct: 255 ENSYL 259



 Score =  100 bits (248), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/47 (93%), Positives = 45/47 (95%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 1055
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPE  GFVENSYL
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPEXXGFVENSYL 259


>gi|71480578|gb|AAZ32214.1| RNA polymerase II large subunit [Pseudapis obesula]
          Length = 275

 Score =  494 bits (1273), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/304 (78%), Positives = 252/304 (82%), Gaps = 46/304 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEP+PG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPSPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDD 375
           IKDD
Sbjct: 272 IKDD 275



 Score = 74.3 bits (181), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/33 (96%), Positives = 33/33 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD 1041
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD 275


>gi|62911597|gb|AAY21429.1| RNA polymerase II [Hylaeus proximus]
          Length = 258

 Score =  494 bits (1271), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/304 (79%), Positives = 252/304 (82%), Gaps = 46/304 (15%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGIGDTIADPQ
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQ 120

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
           TYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                           
Sbjct: 121 TYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG--------------------------- 153

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
                              NTLRQT ENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 154 -------------------NTLRQTXENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSE 396
           TPSE
Sbjct: 255 TPSE 258



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/54 (98%), Positives = 54/54 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 1062
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 258


>gi|283836874|emb|CAX52819.1| RNA polymerase II large subunit [Synoestropsis grisoli]
 gi|289779561|emb|CAX52827.1| RNA polymerase II large subunit [Dipseudopsis africana]
 gi|289779563|emb|CAX52828.1| RNA polymerase II large subunit [Protodipseudopsis sp. EI8]
          Length = 257

 Score =  491 bits (1265), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 241/303 (79%), Positives = 250/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHE  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHETAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|34597090|gb|AAQ77120.1| RNA polymerase II largest subunit [Narceus americanus]
          Length = 297

 Score =  491 bits (1265), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/327 (72%), Positives = 263/327 (80%), Gaps = 46/327 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++Q+MN+LMFLPIWDGK+PQP ILKP+ LWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 17  KDQIMNLLMFLPIWDGKVPQPAILKPRHLWTGKQLFSLIIPGNVNMIRTHSTHPDEEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+ GILCKK+LGTS+GSLLHI  LELG EV GRFY +IQTV+
Sbjct: 77  PYKWISPGDTKVLVEHGELISGILCKKTLGTSAGSLLHIVMLELGWEVAGRFYWHIQTVI 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGH+IGIGDTIAD QTY +IQ  IKKAK+DVIEVI+KAHN +LEPTPG      
Sbjct: 137 NNWLLLEGHTIGIGDTIADQQTYTDIQETIKKAKQDVIEVIEKAHNDELEPTPG------ 190

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 191 ----------------------------------------NTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSA+KSL+EYNN K+MVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGGSAQKSLSEYNNFKSMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFF 398
           IKDDYGPESRGFVENSYLAGLTPSEFF
Sbjct: 271 IKDDYGPESRGFVENSYLAGLTPSEFF 297



 Score =  124 bits (310), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 55/56 (98%), Positives = 56/56 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 1064
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 297


>gi|289779675|emb|CAX52888.1| RNA polymerase II large subunit [Pseudoneureclipsis sp. FR5]
          Length = 257

 Score =  491 bits (1265), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/303 (79%), Positives = 251/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHE+ GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHEIAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|158632466|gb|ABW75629.1| RNA polymerase 2 [Capicola nanula]
 gi|158632488|gb|ABW75640.1| RNA polymerase 2 [Samba ogilviei]
          Length = 273

 Score =  491 bits (1265), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/302 (79%), Positives = 250/302 (82%), Gaps = 46/302 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IK 373
           IK
Sbjct: 272 IK 273



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/31 (96%), Positives = 31/31 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 1039
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIK
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 273


>gi|158632404|gb|ABW75598.1| RNA polymerase 2 [Plesiopanurgus zizus]
          Length = 272

 Score =  491 bits (1264), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/301 (79%), Positives = 249/301 (82%), Gaps = 46/301 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 I 372
           I
Sbjct: 272 I 272



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/30 (96%), Positives = 30/30 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFI 1038
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFI
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFI 272


>gi|158632392|gb|ABW75592.1| RNA polymerase 2 [Calliopsis anthidia]
 gi|158632394|gb|ABW75593.1| RNA polymerase 2 [Clavipanurgus desertus]
 gi|158632396|gb|ABW75594.1| RNA polymerase 2 [Panurginus albopilosus]
 gi|158632398|gb|ABW75595.1| RNA polymerase 2 [Camptopoeum frontale]
 gi|158632402|gb|ABW75597.1| RNA polymerase 2 [Melitturga albescens]
 gi|158632406|gb|ABW75599.1| RNA polymerase 2 [Meliturgula scriptifrons]
 gi|158632408|gb|ABW75600.1| RNA polymerase 2 [Meliturgula haematospila]
 gi|158632414|gb|ABW75603.1| RNA polymerase 2 [Perdita trisignata]
 gi|158632416|gb|ABW75604.1| RNA polymerase 2 [Perdita californica]
 gi|158632418|gb|ABW75605.1| RNA polymerase 2 [Macrotera echinocacti]
 gi|158632420|gb|ABW75606.1| RNA polymerase 2 [Panurgus calceatus]
 gi|158632422|gb|ABW75607.1| RNA polymerase 2 [Panurgus canescens]
 gi|158632424|gb|ABW75608.1| RNA polymerase 2 [Panurgus nigriscopus]
 gi|158632426|gb|ABW75609.1| RNA polymerase 2 [Panurgus farinosus]
 gi|158632428|gb|ABW75610.1| RNA polymerase 2 [Panurgus convergens]
 gi|158632430|gb|ABW75611.1| RNA polymerase 2 [Panurgus rungsi]
 gi|158632434|gb|ABW75613.1| RNA polymerase 2 [Panurgus maroccanus]
 gi|158632436|gb|ABW75614.1| RNA polymerase 2 [Panurgus perezi]
 gi|158632438|gb|ABW75615.1| RNA polymerase 2 [Panurgus cephalotes]
 gi|158632440|gb|ABW75616.1| RNA polymerase 2 [Panurgus banksianus proximus]
 gi|158632442|gb|ABW75617.1| RNA polymerase 2 [Panurgus pyropygus]
 gi|158632444|gb|ABW75618.1| RNA polymerase 2 [Panurgus dentatus]
 gi|158632446|gb|ABW75619.1| RNA polymerase 2 [Panurgus pici]
 gi|158632448|gb|ABW75620.1| RNA polymerase 2 [Panurgus niloticus]
          Length = 272

 Score =  491 bits (1264), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/301 (79%), Positives = 249/301 (82%), Gaps = 46/301 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 I 372
           I
Sbjct: 272 I 272



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/30 (96%), Positives = 30/30 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFI 1038
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFI
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFI 272


>gi|317417196|emb|CBI70628.1| RNA polymerase II [Setodes incertus]
          Length = 257

 Score =  491 bits (1264), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/303 (79%), Positives = 251/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+V GRFYGNIQT+VNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDVAGRFYGNIQTIVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|289779545|emb|CAX52818.1| RNA polymerase II large subunit [Lype phaeopa]
          Length = 257

 Score =  491 bits (1263), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/303 (79%), Positives = 251/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|158632388|gb|ABW75590.1| RNA polymerase 2 [Arhysosage ochracea]
 gi|158632390|gb|ABW75591.1| RNA polymerase 2 [Callonychium atacamense]
          Length = 265

 Score =  491 bits (1263), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/301 (79%), Positives = 249/301 (82%), Gaps = 46/301 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 11  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 70

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 71  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 130

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 131 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 184

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 185 ----------------------------------------NTLRQTFENQVNRILNDARD 204

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 205 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 264

Query: 372 I 372
           I
Sbjct: 265 I 265



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/30 (96%), Positives = 30/30 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFI 1038
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFI
Sbjct: 236  SQVIACVGQQNVEGKRIPFGFRKRTLPHFI 265


>gi|269991433|emb|CAX37846.1| RNA polymerase II [Hydropsyche siltalai]
 gi|269991441|emb|CAX37850.1| RNA polymerase II [Aoteapsyche raruraru]
 gi|269991443|emb|CAX37851.1| RNA polymerase II [Aoteapsyche cf. tipua BR7]
 gi|269991445|emb|CAX37852.1| RNA polymerase II [Orthopsyche fimbriata]
 gi|269991599|emb|CAX37920.1| RNA polymerase II [Hydropsyche sp. EX3]
 gi|269991607|emb|CAX37924.1| RNA polymerase II [Hydropsyche yenisar]
 gi|269992357|emb|CAX51704.1| RNA polymerase II [Aoteapsyche philpotti]
 gi|283836866|emb|CAX52785.1| RNA polymerase II large subunit [Aoteapsyche philpotti]
 gi|283836876|emb|CAX52829.1| RNA polymerase II large subunit [Polymorphanisus similis]
 gi|289779485|emb|CAX52784.1| RNA polymerase II large subunit [Aoteapsyche raruraru]
 gi|289779489|emb|CAX52787.1| RNA polymerase II large subunit [Aoteapsyche cf. tipua BR7]
 gi|289779491|emb|CAX52789.1| RNA polymerase II large subunit [Orthopsyche fimbriata]
 gi|289779607|emb|CAX52851.1| RNA polymerase II large subunit [Austrotinodes triangularis]
 gi|289779669|emb|CAX52885.1| RNA polymerase II large subunit [Hydropsyche sp. EX3]
          Length = 257

 Score =  491 bits (1263), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/303 (79%), Positives = 250/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHE  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHETAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|158632412|gb|ABW75602.1| RNA polymerase 2 [Perdita halictoides]
          Length = 267

 Score =  491 bits (1263), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/301 (79%), Positives = 249/301 (82%), Gaps = 46/301 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 13  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 72

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 73  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 132

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 133 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 186

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 187 ----------------------------------------NTLRQTFENQVNRILNDARD 206

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 207 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 266

Query: 372 I 372
           I
Sbjct: 267 I 267



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/30 (96%), Positives = 30/30 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFI 1038
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFI
Sbjct: 238  SQVIACVGQQNVEGKRIPFGFRKRTLPHFI 267


>gi|317417320|emb|CBI70690.1| RNA polymerase II [Grumichella flaveola]
 gi|317417340|emb|CBI70700.1| RNA polymerase II [Grumichella flaveola]
          Length = 257

 Score =  490 bits (1262), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/303 (79%), Positives = 251/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+F+LIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFTLIIPGNVNMIRTHSTHPDDEDEGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|283549565|emb|CAX62862.1| RNA polymerase 2 [Pycnocentrella eruensis]
 gi|283549571|emb|CAX62865.1| RNA polymerase 2 [Pycnocentrella eruensis]
          Length = 257

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/303 (79%), Positives = 250/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDDEDEGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHE  GRFYGNIQTVVNNWLLL+G                       
Sbjct: 61  SAGSLLHICMLELGHETAGRFYGNIQTVVNNWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|317417318|emb|CBI70689.1| RNA polymerase II [Achoropsyche duodecimpunctata]
          Length = 257

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/303 (79%), Positives = 251/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLL+G                       
Sbjct: 61  SAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|317417144|emb|CBI70602.1| RNA polymerase II [Phryganea grandis]
          Length = 257

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/303 (78%), Positives = 250/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHE  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHETAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTY+EIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYIEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|158632486|gb|ABW75639.1| RNA polymerase 2 [Dasypoda spinigera]
          Length = 273

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/302 (78%), Positives = 250/302 (82%), Gaps = 46/302 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IK 373
           I+
Sbjct: 272 IQ 273



 Score = 68.6 bits (166), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/31 (93%), Positives = 31/31 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 1039
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFI+
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIQ 273


>gi|317417338|emb|CBI70699.1| RNA polymerase II [Marilia elongata]
          Length = 257

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/303 (78%), Positives = 250/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHE  G+FYGNIQTV+NNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHETAGKFYGNIQTVINNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|317417326|emb|CBI70693.1| RNA polymerase II [Oecetis australis]
          Length = 257

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/303 (79%), Positives = 251/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHEV GRFYGNIQTVVNNWLLL+G                       
Sbjct: 61  SAGSLLHICMLELGHEVAGRFYGNIQTVVNNWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|317417322|emb|CBI70691.1| RNA polymerase II [Symphitoneuria sabaensis]
          Length = 257

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/303 (79%), Positives = 251/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|307779554|gb|ADN94058.1| RNA polymerase II [Macrogalea ellioti]
          Length = 280

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/309 (77%), Positives = 253/309 (81%), Gaps = 46/309 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VE G L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVERGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N+WLLLEGHSIGIGDTIAD  TY EI+ AIKKAKEDVI+VIQKAHNM+LEPTPG      
Sbjct: 138 NHWLLLEGHSIGIGDTIADAHTYNEIRDAIKKAKEDVIDVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 IKDDYGPES 380
           IKDDYGPES
Sbjct: 272 IKDDYGPES 280



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 280


>gi|269991435|emb|CAX37847.1| RNA polymerase II [Chimarra marginata]
          Length = 257

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/303 (78%), Positives = 250/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+F+LIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFTLIIPGNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHE  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHETAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|317417222|emb|CBI70641.1| RNA polymerase II [Setodes bracteatus]
          Length = 257

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/303 (79%), Positives = 251/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLL+G                       
Sbjct: 61  SAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|317417324|emb|CBI70692.1| RNA polymerase II [Oecetis minasata]
          Length = 257

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/303 (78%), Positives = 251/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHEV GRFYGNIQTV+NNWLLL+G                       
Sbjct: 61  SAGSLLHICMLELGHEVAGRFYGNIQTVINNWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|158632432|gb|ABW75612.1| RNA polymerase 2 [Panurgus dentipes]
          Length = 271

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/300 (79%), Positives = 248/300 (82%), Gaps = 46/300 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/29 (96%), Positives = 29/29 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHF 1037
            +QVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHF 271


>gi|158632410|gb|ABW75601.1| RNA polymerase 2 [Neffapis longilingua]
          Length = 267

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/300 (79%), Positives = 248/300 (82%), Gaps = 46/300 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 14  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 73

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 74  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 133

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 134 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 187

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 188 ----------------------------------------NTLRQTFENQVNRILNDARD 207

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 208 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 267



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/29 (96%), Positives = 29/29 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHF 1037
            +QVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 239  SQVIACVGQQNVEGKRIPFGFRKRTLPHF 267


>gi|126508292|gb|ABO15329.1| RNA polymerase II [Apoica pallida]
 gi|158632384|gb|ABW75588.1| RNA polymerase 2 [Andrena albopunctata]
 gi|158632386|gb|ABW75589.1| RNA polymerase 2 [Andrena cineraria]
 gi|158632460|gb|ABW75626.1| RNA polymerase 2 [Macropis fulvipes]
 gi|158632476|gb|ABW75634.1| RNA polymerase 2 [Dasypoda oraniensis]
 gi|158632490|gb|ABW75641.1| RNA polymerase 2 [Samba spinosa]
 gi|323387783|gb|ADX60042.1| RNA polymerase II [Samba atra]
          Length = 272

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/301 (79%), Positives = 249/301 (82%), Gaps = 46/301 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271

Query: 372 I 372
           I
Sbjct: 272 I 272



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/30 (96%), Positives = 30/30 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFI 1038
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFI
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHFI 272


>gi|283836872|emb|CAX52817.1| RNA polymerase II large subunit [Moruya charadra]
          Length = 257

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/303 (78%), Positives = 250/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHE  GRFYGNIQTVVNNWLLL+G                       
Sbjct: 61  SAGSLLHICMLELGHETAGRFYGNIQTVVNNWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269991605|emb|CAX37923.1| RNA polymerase II [Hydropsyche valkanovi]
          Length = 257

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/303 (78%), Positives = 250/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+F+LIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFTLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHE  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHETAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|158632458|gb|ABW75625.1| RNA polymerase 2 [Melitta ezoana]
          Length = 263

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/301 (79%), Positives = 249/301 (82%), Gaps = 46/301 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHS+HPDDED G
Sbjct: 9   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSSHPDDEDEG 68

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 69  PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 128

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 129 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 182

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 183 ----------------------------------------NTLRQTFENQVNRILNDARD 202

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 203 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 262

Query: 372 I 372
           I
Sbjct: 263 I 263



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/30 (96%), Positives = 30/30 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFI 1038
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFI
Sbjct: 234  SQVIACVGQQNVEGKRIPFGFRKRTLPHFI 263


>gi|158632456|gb|ABW75624.1| RNA polymerase 2 [Melitta haemorrhoidalis]
          Length = 263

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/301 (79%), Positives = 249/301 (82%), Gaps = 46/301 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHS+HPDDED G
Sbjct: 9   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSSHPDDEDDG 68

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 69  PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 128

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 129 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 182

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 183 ----------------------------------------NTLRQTFENQVNRILNDARD 202

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 203 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 262

Query: 372 I 372
           I
Sbjct: 263 I 263



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/30 (96%), Positives = 30/30 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFI 1038
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFI
Sbjct: 234  SQVIACVGQQNVEGKRIPFGFRKRTLPHFI 263


>gi|317417328|emb|CBI70694.1| RNA polymerase II [Blyzophilus dorsohamatus]
          Length = 257

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/303 (79%), Positives = 250/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTY EIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYKEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269991543|emb|CAX37892.1| RNA polymerase II [Abacaria ruficeps]
 gi|289779643|emb|CAX52870.1| RNA polymerase II large subunit [Abacaria ruficeps]
          Length = 257

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/303 (78%), Positives = 250/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDXGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|321468698|gb|EFX79682.1| hypothetical protein DAPPUDRAFT_52186 [Daphnia pulex]
          Length = 1047

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 256/421 (60%), Positives = 300/421 (71%), Gaps = 57/421 (13%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+F+LIIPGNVNM RTHSTHPDDED GPY+WIS GDTKV+VE+G L+MGILCKK+LG 
Sbjct: 389 GKQLFTLIIPGNVNMMRTHSTHPDDEDEGPYKWISSGDTKVMVENGELVMGILCKKTLGA 448

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+ SLLHI F+ELGHEVCG+FYGN+QTV+NNWLL EG                       
Sbjct: 449 SAASLLHIIFMELGHEVCGQFYGNLQTVINNWLLYEG----------------------- 485

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGD +A+  TYL IQ  I+ AKEDVIEV Q +H
Sbjct: 486 -----------------------HSIGIGDMLAERLTYLNIQATIQNAKEDVIEVTQNSH 522

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           N +LEPTPGNTLRQTFENQV RI+ DA+++    AK SL  YNNLKAM VAGS GS+I  
Sbjct: 523 NDELEPTPGNTLRQTFENQVLRIIYDAQEQASDLAKNSLKGYNNLKAMAVAGSSGSSITT 582

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQ IACVGQQNVEG+RIPFGFRKRTLPHFIKDD GPESRGFVENSYL GLTPSEF+FHAM
Sbjct: 583 SQAIACVGQQNVEGQRIPFGFRKRTLPHFIKDDNGPESRGFVENSYLTGLTPSEFYFHAM 642

Query: 403 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAV 462
            GRE LI  A   +ETG I R+L+K+MESVMVHYD TVRNS G+L+Q  YGEDGL  E+V
Sbjct: 643 AGRELLIYDARIKSETGII-RQLVKSMESVMVHYDGTVRNSAGRLLQFSYGEDGLAAESV 701

Query: 463 EHQRIDTVALSHKKFEDKYRFDPSNERPTLRNVSSLRRVVN---SKPLLIGCWKLTSVEK 519
           E Q++ TV LS+  FE K++FDPSNE       + +RR+ N   ++ L+     +T +E 
Sbjct: 702 ELQKMPTVKLSNSVFEKKFKFDPSNE-------NYVRRIFNEEITRELISSAEVITEIEH 754

Query: 520 E 520
           E
Sbjct: 755 E 755



 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/242 (51%), Positives = 149/242 (61%), Gaps = 39/242 (16%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V GED+LS QAN+NATLLFQCLVRSTLC+K +AE YRLSSEAFEWL+G+IE RFQQAQ  
Sbjct: 823  VVGEDKLSIQANQNATLLFQCLVRSTLCSKRIAEEYRLSSEAFEWLIGKIETRFQQAQAQ 882

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P+S    
Sbjct: 883  PGEMVGALAAQSLGQPATQMTLNTFHFAGVSSKNVTLGVAR--LKEIINISKSPKSPSMT 940

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
               +L G   ++    A   RE L      T         L +VTANTAIYYDPDP NTV
Sbjct: 941  --VFLRGEAATD----AEKAREVLCRLEHTT---------LRKVTANTAIYYDPDPLNTV 985

Query: 1111 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNC 1170
            I EDQ+FVN YYEM DFDPTRISPWLLRIELDRKRMTDK+LTME I+EK+   FG+ + C
Sbjct: 986  ILEDQDFVNFYYEMGDFDPTRISPWLLRIELDRKRMTDKRLTMEQIAEKVYTMFGNAVKC 1045

Query: 1171 IF 1172
            +F
Sbjct: 1046 MF 1047



 Score =  158 bits (399), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 81/168 (48%), Positives = 108/168 (64%), Gaps = 35/168 (20%)

Query: 594 IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDK 653
           I R+L+K+MESVMVHYD TVRNS G+L+Q  YGEDGL  E+VE Q++ TV LS+  FE K
Sbjct: 660 IIRQLVKSMESVMVHYDGTVRNSAGRLLQFSYGEDGLAAESVELQKMPTVKLSNSVFEKK 719

Query: 654 YRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMG 713
           ++FDPSNE  +RRIFNE++ REL+ S +VI+E+E E                        
Sbjct: 720 FKFDPSNENYVRRIFNEEITRELISSAEVITEIEHE------------------------ 755

Query: 714 SGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      WE+L +DREALR+IF +GE+ VVLPCNL  +I+ +Q+
Sbjct: 756 -----------WEQLYKDREALRQIFPTGENKVVLPCNLQRMIWNVQK 792



 Score =  137 bits (345), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 77/100 (77%), Gaps = 1/100 (1%)

Query: 1010 QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 1069
            Q IACVGQQNVEG+RIPFGFRKRTLPHFIKDD GPESRGFVENSYL GLTPSEF+FHAM 
Sbjct: 584  QAIACVGQQNVEGQRIPFGFRKRTLPHFIKDDNGPESRGFVENSYLTGLTPSEFYFHAMA 643

Query: 1070 GREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            GRE LI  A   +ET  ++  L +   +  ++YD   +N+
Sbjct: 644  GRELLIYDARIKSET-GIIRQLVKSMESVMVHYDGTVRNS 682



 Score =  134 bits (336), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 62/76 (81%), Positives = 67/76 (88%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP NTVI EDQ+FVN YYEM DFDPTRISPWLLRIELDRKRMTDK+
Sbjct: 966  LRKVTANTAIYYDPDPLNTVILEDQDFVNFYYEMGDFDPTRISPWLLRIELDRKRMTDKR 1025

Query: 1589 LTMEAISEKINAGFGD 1604
            LTME I+EK+   FG+
Sbjct: 1026 LTMEQIAEKVYTMFGN 1041



 Score = 41.6 bits (96), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 15/23 (65%), Positives = 20/23 (86%)

Query: 30  EESIILGMDPKFARPDWMLVTVL 52
           EE  ILGMDPK+ARP+WM+++ L
Sbjct: 220 EECAILGMDPKYARPEWMIISCL 242


>gi|283549567|emb|CAX62863.1| RNA polymerase 2 [Helicopsyche albescens]
          Length = 257

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/303 (78%), Positives = 250/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVN+ RTHSTHPDDED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNLIRTHSTHPDDEDEGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269991437|emb|CAX37848.1| RNA polymerase II [Aoteapsyche tepoka]
 gi|269991439|emb|CAX37849.1| RNA polymerase II [Aoteapsyche colonica]
 gi|269991453|emb|CAX37856.1| RNA polymerase II [Orthopsyche schefterae]
 gi|269991455|emb|CAX37857.1| RNA polymerase II [Orthopsyche kina]
 gi|269991457|emb|CAX37858.1| RNA polymerase II [Orthopsyche imbah]
 gi|269991463|emb|CAX37861.1| RNA polymerase II [Orthopsyche vrupama]
 gi|269991465|emb|CAX37862.1| RNA polymerase II [Orthopsyche vrupama]
 gi|269991467|emb|CAX37863.1| RNA polymerase II [Orthopsyche nadauna]
 gi|269991469|emb|CAX37864.1| RNA polymerase II [Orthopsyche wardi]
 gi|269991471|emb|CAX37865.1| RNA polymerase II [Orthopsyche wardi]
 gi|269991473|emb|CAX37866.1| RNA polymerase II [Orthopsyche pakaha]
 gi|269991475|emb|CAX37867.1| RNA polymerase II [Orthopsyche pakaha]
 gi|269991477|emb|CAX37868.1| RNA polymerase II [Orthopsyche sematho]
 gi|269991479|emb|CAX37869.1| RNA polymerase II [Orthopsyche ayapona]
 gi|269991481|emb|CAX37870.1| RNA polymerase II [Orthopsyche rashala]
 gi|269991485|emb|CAX37872.1| RNA polymerase II [Abacaria caledona]
 gi|269991487|emb|CAX37873.1| RNA polymerase II [Caledopsyche cheesmanae]
 gi|269991491|emb|CAX37875.1| RNA polymerase II [Caledopsyche cerberus]
 gi|269991497|emb|CAX37878.1| RNA polymerase II [Caledopsyche phallaina]
 gi|269991499|emb|CAX37879.1| RNA polymerase II [Caledopsyche phallaina]
 gi|269991521|emb|CAX37881.1| RNA polymerase II [Caledopsyche leander]
 gi|269991523|emb|CAX37882.1| RNA polymerase II [Caledopsyche leander]
 gi|269991525|emb|CAX37883.1| RNA polymerase II [Caledopsyche noumea]
 gi|269991529|emb|CAX37885.1| RNA polymerase II [Caledopsyche apide]
 gi|269991533|emb|CAX37887.1| RNA polymerase II [Caledopsyche noumea]
 gi|269991535|emb|CAX37888.1| RNA polymerase II [Stenopsychodes mjobergi]
 gi|269991537|emb|CAX37889.1| RNA polymerase II [Hydropsyche sp. CW1]
 gi|269991541|emb|CAX37891.1| RNA polymerase II [Cheumatopsyche alampeta]
 gi|269991545|emb|CAX37893.1| RNA polymerase II [Caledopsyche atalanta]
 gi|269991547|emb|CAX37894.1| RNA polymerase II [Caledopsyche atalanta]
 gi|269991549|emb|CAX37895.1| RNA polymerase II [Caledopsyche atalanta]
 gi|269991553|emb|CAX37897.1| RNA polymerase II [Orthopsyche piuna]
 gi|269991555|emb|CAX37898.1| RNA polymerase II [Orthopsyche peta]
 gi|269991559|emb|CAX37900.1| RNA polymerase II [Orthopsyche tneda]
 gi|269991561|emb|CAX37901.1| RNA polymerase II [Orthopsyche mcfarlanei]
 gi|269991563|emb|CAX37902.1| RNA polymerase II [Orthopsyche nadauna]
 gi|269991565|emb|CAX37903.1| RNA polymerase II [Orthopsyche nadauna]
 gi|269991567|emb|CAX37904.1| RNA polymerase II [Orthopsyche anulmika]
 gi|269991569|emb|CAX37905.1| RNA polymerase II [Orthopsyche edhamasa]
 gi|269991571|emb|CAX37906.1| RNA polymerase II [Orthopsyche touna]
 gi|269991575|emb|CAX37908.1| RNA polymerase II [Orthopsyche pakaha]
 gi|269991577|emb|CAX37909.1| RNA polymerase II [Orthopsyche schefterae]
 gi|269991581|emb|CAX37911.1| RNA polymerase II [Orthopsyche imbah]
 gi|269991583|emb|CAX37912.1| RNA polymerase II [Orthopsyche wardi]
 gi|269991585|emb|CAX37913.1| RNA polymerase II [Orthopsyche tneda]
 gi|269991587|emb|CAX37914.1| RNA polymerase II [Orthopsyche neboissi]
 gi|269991589|emb|CAX37915.1| RNA polymerase II [Orthopsyche sematho]
 gi|269991591|emb|CAX37916.1| RNA polymerase II [Caledopsyche cheesmanae]
 gi|269991593|emb|CAX37917.1| RNA polymerase II [Abacaria sp. EV9]
 gi|269991595|emb|CAX37918.1| RNA polymerase II [Abacaria sp. DJ6]
 gi|269991597|emb|CAX37919.1| RNA polymerase II [Abacaria moselyi]
 gi|269991603|emb|CAX37922.1| RNA polymerase II [Hydropsyche sp. EX5]
 gi|269991609|emb|CAX37925.1| RNA polymerase II [Cheumatopsyche persica]
 gi|269991621|emb|CAX37931.1| RNA polymerase II [Hydropsyche angustipennis]
 gi|283476440|emb|CAY54374.1| RNA polymerase 2 [Daternomina sp. GM6]
 gi|283476442|emb|CAY54375.1| RNA polymerase 2 [Daternomina sp. GM7]
 gi|283836858|emb|CAX52778.1| RNA polymerase II large subunit [Polycentropus irroratus]
 gi|283836860|emb|CAX52779.1| RNA polymerase II large subunit [Neureclipsis bimaculata]
 gi|283836862|emb|CAX52780.1| RNA polymerase II large subunit [Polyplectropus sp. G8]
 gi|283836864|emb|CAX52781.1| RNA polymerase II large subunit [Polyplectropus sp. I2]
 gi|283836880|emb|CAX52883.1| RNA polymerase II large subunit [Tinodes sp. EW2]
 gi|289779481|emb|CAX52782.1| RNA polymerase II large subunit [Aoteapsyche tepoka]
 gi|289779483|emb|CAX52783.1| RNA polymerase II large subunit [Aoteapsyche colonica]
 gi|289779499|emb|CAX52793.1| RNA polymerase II large subunit [Orthopsyche kina]
 gi|289779501|emb|CAX52794.1| RNA polymerase II large subunit [Orthopsyche imbah]
 gi|289779507|emb|CAX52797.1| RNA polymerase II large subunit [Orthopsyche vrupama]
 gi|289779509|emb|CAX52798.1| RNA polymerase II large subunit [Orthopsyche nadauna]
 gi|289779511|emb|CAX52799.1| RNA polymerase II large subunit [Orthopsyche wardi]
 gi|289779513|emb|CAX52800.1| RNA polymerase II large subunit [Orthopsyche wardi]
 gi|289779515|emb|CAX52801.1| RNA polymerase II large subunit [Orthopsyche pakaha]
 gi|289779517|emb|CAX52802.1| RNA polymerase II large subunit [Orthopsyche sematho]
 gi|289779519|emb|CAX52803.1| RNA polymerase II large subunit [Orthopsyche ayapona]
 gi|289779521|emb|CAX52804.1| RNA polymerase II large subunit [Orthopsyche rashala]
 gi|289779529|emb|CAX52808.1| RNA polymerase II large subunit [Caledopsyche phallaina]
 gi|289779535|emb|CAX52812.1| RNA polymerase II large subunit [Caledopsyche apide]
 gi|289779539|emb|CAX52814.1| RNA polymerase II large subunit [Caledopsyche noumea]
 gi|289779541|emb|CAX52815.1| RNA polymerase II large subunit [Hydropsyche sp. CW1]
 gi|289779549|emb|CAX52821.1| RNA polymerase II large subunit [Ecnomina sp. EH2]
 gi|289779577|emb|CAX52836.1| RNA polymerase II large subunit [Daternomina sp. EK3]
 gi|289779579|emb|CAX52837.1| RNA polymerase II large subunit [Daternomina sp. EK4]
 gi|289779581|emb|CAX52838.1| RNA polymerase II large subunit [Daternomina sp. EK5]
 gi|289779583|emb|CAX52839.1| RNA polymerase II large subunit [Daternomina sp. EK6]
 gi|289779585|emb|CAX52840.1| RNA polymerase II large subunit [Daternomina sp. EK8]
 gi|289779599|emb|CAX52847.1| RNA polymerase II large subunit [Ecnomina sp. EL6]
 gi|289779601|emb|CAX52848.1| RNA polymerase II large subunit [Ecnomina sp. EL7]
 gi|289779605|emb|CAX52850.1| RNA polymerase II large subunit [Austrotinodes sp. EL9]
 gi|289779609|emb|CAX52852.1| RNA polymerase II large subunit [Austrotinodes sp. EM2]
 gi|289779611|emb|CAX52853.1| RNA polymerase II large subunit [Austrotinodes recta]
 gi|289779615|emb|CAX52855.1| RNA polymerase II large subunit [Ecnomina sp. EM7]
 gi|289779617|emb|CAX52856.1| RNA polymerase II large subunit [Agmina parie]
 gi|289779621|emb|CAX52859.1| RNA polymerase II large subunit [Agmina parie]
 gi|289779623|emb|CAX52860.1| RNA polymerase II large subunit [Agmina mariae]
 gi|289779625|emb|CAX52861.1| RNA polymerase II large subunit [Ecnomina sp. EO9]
 gi|289779627|emb|CAX52862.1| RNA polymerase II large subunit [Ecnomina sp. EP1]
 gi|289779631|emb|CAX52864.1| RNA polymerase II large subunit [Daternomina thinotes]
 gi|289779633|emb|CAX52865.1| RNA polymerase II large subunit [Ecnomina sp. EP4]
 gi|289779635|emb|CAX52866.1| RNA polymerase II large subunit [Ecnomina legula]
 gi|289779637|emb|CAX52867.1| RNA polymerase II large subunit [Ecnomina sp. EP6]
 gi|289779639|emb|CAX52868.1| RNA polymerase II large subunit [Ecnomina sp. EP7]
 gi|289779641|emb|CAX52869.1| RNA polymerase II large subunit [Ecnomina sp. EP8]
 gi|289779645|emb|CAX52871.1| RNA polymerase II large subunit [Caledopsyche atalanta]
 gi|289779647|emb|CAX52872.1| RNA polymerase II large subunit [Caledopsyche atalanta]
 gi|289779649|emb|CAX52873.1| RNA polymerase II large subunit [Caledopsyche atalanta]
 gi|289779651|emb|CAX52874.1| RNA polymerase II large subunit [Orthopsyche piuna]
 gi|289779653|emb|CAX52875.1| RNA polymerase II large subunit [Orthopsyche peta]
 gi|289779655|emb|CAX52876.1| RNA polymerase II large subunit [Orthopsyche tneda]
 gi|289779657|emb|CAX52877.1| RNA polymerase II large subunit [Orthopsyche anulmika]
 gi|289779659|emb|CAX52878.1| RNA polymerase II large subunit [Orthopsyche touna]
 gi|289779661|emb|CAX52879.1| RNA polymerase II large subunit [Abacaria sp. EV9]
 gi|289779663|emb|CAX52880.1| RNA polymerase II large subunit [Abacaria sp. DJ6]
 gi|289779665|emb|CAX52881.1| RNA polymerase II large subunit [Abacaria moselyi]
 gi|289779667|emb|CAX52882.1| RNA polymerase II large subunit [Dipseudopsis sp. EW1]
 gi|289779671|emb|CAX52886.1| RNA polymerase II large subunit [Hydropsyche sp. EX5]
 gi|309755518|gb|ADO86593.1| RNA polymerase II [Agmina sp. 11 ME-2010]
 gi|309755530|gb|ADO86599.1| RNA polymerase II [Agmina sp. 33 ME-2010]
 gi|309755532|gb|ADO86600.1| RNA polymerase II [Agmina sp. 49 ME-2010]
 gi|309755534|gb|ADO86601.1| RNA polymerase II [Agmina sp. 31 ME-2010]
 gi|309755538|gb|ADO86603.1| RNA polymerase II [Agmina sp. 11 ME-2010]
 gi|309755540|gb|ADO86604.1| RNA polymerase II [Agmina sp. 24 ME-2010]
 gi|309755542|gb|ADO86605.1| RNA polymerase II [Agmina sp. 12 ME-2010]
 gi|309755544|gb|ADO86606.1| RNA polymerase II [Agmina sp. 33 ME-2010]
 gi|309755548|gb|ADO86608.1| RNA polymerase II [Agmina sp. 45 ME-2010]
 gi|309755550|gb|ADO86609.1| RNA polymerase II [Agmina sp. 12 ME-2010]
 gi|309755552|gb|ADO86610.1| RNA polymerase II [Agmina sp. 40 ME-2010]
 gi|309755554|gb|ADO86611.1| RNA polymerase II [Agmina panda]
 gi|309755556|gb|ADO86612.1| RNA polymerase II [Agmina diriwi]
 gi|309755560|gb|ADO86614.1| RNA polymerase II [Agmina mariae]
 gi|309755562|gb|ADO86615.1| RNA polymerase II [Agmina diriwi]
 gi|309755564|gb|ADO86616.1| RNA polymerase II [Agmina sp. 21 ME-2010]
 gi|309755566|gb|ADO86617.1| RNA polymerase II [Agmina hamata]
 gi|309755568|gb|ADO86618.1| RNA polymerase II [Agmina mariae]
 gi|309755570|gb|ADO86619.1| RNA polymerase II [Agmina sp. 12 ME-2010]
 gi|309755572|gb|ADO86620.1| RNA polymerase II [Agmina nodosa]
 gi|309755574|gb|ADO86621.1| RNA polymerase II [Agmina sp. 31 ME-2010]
 gi|309755578|gb|ADO86623.1| RNA polymerase II [Agmina sp. 18 ME-2010]
 gi|309755584|gb|ADO86626.1| RNA polymerase II [Agmina hirta]
 gi|309755586|gb|ADO86627.1| RNA polymerase II [Agmina sp. 45 ME-2010]
 gi|309755588|gb|ADO86628.1| RNA polymerase II [Agmina rhara]
 gi|309755590|gb|ADO86629.1| RNA polymerase II [Agmina sp. 23 ME-2010]
 gi|309755594|gb|ADO86631.1| RNA polymerase II [Agmina sp. 4 ME-2010]
 gi|309755596|gb|ADO86632.1| RNA polymerase II [Agmina joycei]
 gi|309755600|gb|ADO86634.1| RNA polymerase II [Agmina sp. 22 ME-2010]
 gi|309755602|gb|ADO86635.1| RNA polymerase II [Agmina sp. 8 ME-2010]
 gi|309755604|gb|ADO86636.1| RNA polymerase II [Agmina padi]
 gi|309755606|gb|ADO86637.1| RNA polymerase II [Agmina sp. 49 ME-2010]
 gi|309755608|gb|ADO86638.1| RNA polymerase II [Agmina mariae]
 gi|309755610|gb|ADO86639.1| RNA polymerase II [Ecnomidae gen. sp. 3 ME-2010]
 gi|309755612|gb|ADO86640.1| RNA polymerase II [Agmina acula]
 gi|309755614|gb|ADO86641.1| RNA polymerase II [Agmina sp. 18 ME-2010]
 gi|309755618|gb|ADO86643.1| RNA polymerase II [Agmina sp. 43 ME-2010]
 gi|309755620|gb|ADO86644.1| RNA polymerase II [Agmina sp. 24 ME-2010]
 gi|309755622|gb|ADO86645.1| RNA polymerase II [Agmina sp. 24 ME-2010]
 gi|309755624|gb|ADO86646.1| RNA polymerase II [Agmina padi]
 gi|309755628|gb|ADO86648.1| RNA polymerase II [Agmina sp. 5 ME-2010]
 gi|309755630|gb|ADO86649.1| RNA polymerase II [Agmina sp. 53 ME-2010]
 gi|309755632|gb|ADO86650.1| RNA polymerase II [Agmina diriwi]
 gi|309755634|gb|ADO86651.1| RNA polymerase II [Agmina sp. 3 ME-2010]
 gi|309755636|gb|ADO86652.1| RNA polymerase II [Agmina bimaculata]
 gi|309755640|gb|ADO86654.1| RNA polymerase II [Agmina artarima]
 gi|309755648|gb|ADO86658.1| RNA polymerase II [Agmina berada]
 gi|309755650|gb|ADO86659.1| RNA polymerase II [Agmina sp. 57 ME-2010]
 gi|309755652|gb|ADO86660.1| RNA polymerase II [Agmina cheirella]
 gi|309755658|gb|ADO86663.1| RNA polymerase II [Ecnomidae gen. sp. 3 ME-2010]
 gi|309755662|gb|ADO86665.1| RNA polymerase II [Agmina sp. 49 ME-2010]
 gi|309755668|gb|ADO86668.1| RNA polymerase II [Agmina sp. 50 ME-2010]
 gi|309755670|gb|ADO86669.1| RNA polymerase II [Agmina sp. 32 ME-2010]
 gi|309755672|gb|ADO86670.1| RNA polymerase II [Agmina sp. 10 ME-2010]
 gi|309755676|gb|ADO86672.1| RNA polymerase II [Agmina sp. 10 ME-2010]
 gi|309755678|gb|ADO86673.1| RNA polymerase II [Agmina sp. 29 ME-2010]
 gi|309755680|gb|ADO86674.1| RNA polymerase II [Agmina sp. 24 ME-2010]
 gi|309755682|gb|ADO86675.1| RNA polymerase II [Agmina sp. 3 ME-2010]
 gi|309755684|gb|ADO86676.1| RNA polymerase II [Agmina sp. 15 ME-2010]
 gi|309755686|gb|ADO86677.1| RNA polymerase II [Agmina sp. 31 ME-2010]
 gi|309755692|gb|ADO86680.1| RNA polymerase II [Agmina bimaculata]
 gi|309755696|gb|ADO86682.1| RNA polymerase II [Agmina nodosa]
 gi|309755698|gb|ADO86683.1| RNA polymerase II [Agmina sp. 39 ME-2010]
 gi|309755700|gb|ADO86684.1| RNA polymerase II [Agmina artarima]
 gi|309755702|gb|ADO86685.1| RNA polymerase II [Agmina sp. 34 ME-2010]
 gi|309755704|gb|ADO86686.1| RNA polymerase II [Agmina sp. 39 ME-2010]
 gi|309755708|gb|ADO86688.1| RNA polymerase II [Agmina sp. 25 ME-2010]
 gi|309755710|gb|ADO86689.1| RNA polymerase II [Agmina hastata]
 gi|309755712|gb|ADO86690.1| RNA polymerase II [Agmina sp. 55 ME-2010]
 gi|309755714|gb|ADO86691.1| RNA polymerase II [Agmina sp. 6 ME-2010]
 gi|309755718|gb|ADO86693.1| RNA polymerase II [Agmina sp. 21 ME-2010]
 gi|309755720|gb|ADO86694.1| RNA polymerase II [Agmina sp. 24 ME-2010]
 gi|309755724|gb|ADO86696.1| RNA polymerase II [Agmina sp. 19 ME-2010]
 gi|309755726|gb|ADO86697.1| RNA polymerase II [Agmina cf. padi ME-2010]
 gi|309755728|gb|ADO86698.1| RNA polymerase II [Agmina sp. 53 ME-2010]
 gi|309755730|gb|ADO86699.1| RNA polymerase II [Agmina sp. 18 ME-2010]
 gi|309755732|gb|ADO86700.1| RNA polymerase II [Agmina sp. 55 ME-2010]
 gi|309755734|gb|ADO86701.1| RNA polymerase II [Agmina sp. 49 ME-2010]
 gi|309755736|gb|ADO86702.1| RNA polymerase II [Agmina sp. 18 ME-2010]
 gi|309755738|gb|ADO86703.1| RNA polymerase II [Agmina sp. 48 ME-2010]
 gi|309755742|gb|ADO86705.1| RNA polymerase II [Agmina sp. 49 ME-2010]
 gi|309755744|gb|ADO86706.1| RNA polymerase II [Agmina sp. 25 ME-2010]
 gi|309755748|gb|ADO86708.1| RNA polymerase II [Agmina sp. 18 ME-2010]
 gi|309755750|gb|ADO86709.1| RNA polymerase II [Agmina sp. 1 ME-2010]
 gi|309755752|gb|ADO86710.1| RNA polymerase II [Ecnomidae gen. sp. 1 ME-2010]
 gi|309755754|gb|ADO86711.1| RNA polymerase II [Agmina sp. 31 ME-2010]
 gi|309755758|gb|ADO86713.1| RNA polymerase II [Agmina sp. 31 ME-2010]
 gi|309755760|gb|ADO86714.1| RNA polymerase II [Agmina sp. 31 ME-2010]
 gi|309755762|gb|ADO86715.1| RNA polymerase II [Agmina sp. 31 ME-2010]
 gi|309755764|gb|ADO86716.1| RNA polymerase II [Agmina kara]
 gi|309755766|gb|ADO86717.1| RNA polymerase II [Agmina bimaculata]
 gi|309755768|gb|ADO86718.1| RNA polymerase II [Agmina padi]
 gi|309755770|gb|ADO86719.1| RNA polymerase II [Agmina sp. 2 ME-2010]
 gi|309755772|gb|ADO86720.1| RNA polymerase II [Agmina sp. 2 ME-2010]
 gi|309755774|gb|ADO86721.1| RNA polymerase II [Agmina sp. 31 ME-2010]
 gi|309755776|gb|ADO86722.1| RNA polymerase II [Agmina sp. 46 ME-2010]
 gi|309755778|gb|ADO86723.1| RNA polymerase II [Agmina sp. 42 ME-2010]
 gi|309755784|gb|ADO86726.1| RNA polymerase II [Agmina sp. 1 ME-2010]
 gi|309755786|gb|ADO86727.1| RNA polymerase II [Agmina sp. 26 ME-2010]
 gi|309755790|gb|ADO86729.1| RNA polymerase II [Agmina panda]
 gi|309755796|gb|ADO86732.1| RNA polymerase II [Agmina nodosa]
 gi|309755798|gb|ADO86733.1| RNA polymerase II [Agmina sp. 21 ME-2010]
 gi|309755800|gb|ADO86734.1| RNA polymerase II [Agmina sp. 55 ME-2010]
 gi|309755802|gb|ADO86735.1| RNA polymerase II [Agmina sp. 30 ME-2010]
 gi|309755804|gb|ADO86736.1| RNA polymerase II [Agmina kara]
 gi|309755806|gb|ADO86737.1| RNA polymerase II [Agmina sp. 13 ME-2010]
 gi|309755808|gb|ADO86738.1| RNA polymerase II [Agmina sp. 54 ME-2010]
 gi|309755810|gb|ADO86739.1| RNA polymerase II [Agmina sp. 25 ME-2010]
 gi|309755812|gb|ADO86740.1| RNA polymerase II [Agmina sp. 39 ME-2010]
 gi|309755814|gb|ADO86741.1| RNA polymerase II [Agmina sp. 17 ME-2010]
 gi|309755818|gb|ADO86743.1| RNA polymerase II [Agmina sp. 28 ME-2010]
 gi|309755820|gb|ADO86744.1| RNA polymerase II [Agmina sp. 44 ME-2010]
 gi|309755824|gb|ADO86746.1| RNA polymerase II [Agmina padi]
 gi|309755828|gb|ADO86748.1| RNA polymerase II [Agmina joycei]
 gi|309755830|gb|ADO86749.1| RNA polymerase II [Agmina diriwi]
 gi|309755834|gb|ADO86751.1| RNA polymerase II [Agmina joycei]
 gi|309755838|gb|ADO86753.1| RNA polymerase II [Agmina sp. 10 ME-2010]
 gi|309755842|gb|ADO86755.1| RNA polymerase II [Agmina sp. 8 ME-2010]
 gi|309755846|gb|ADO86757.1| RNA polymerase II [Agmina diriwi]
 gi|309755852|gb|ADO86760.1| RNA polymerase II [Agmina sp. 22 ME-2010]
 gi|309755854|gb|ADO86761.1| RNA polymerase II [Agmina nodosa]
 gi|309755856|gb|ADO86762.1| RNA polymerase II [Agmina hastata]
          Length = 257

 Score =  488 bits (1257), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/303 (78%), Positives = 250/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|283836884|emb|CAX52889.1| RNA polymerase II large subunit [Pseudoleptonema quinquefasciatum]
          Length = 257

 Score =  488 bits (1257), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHE  GRFYGNIQTVVN WLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHETAGRFYGNIQTVVNTWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|283549569|emb|CAX62864.1| RNA polymerase 2 [Philanisus plebeius]
 gi|283549595|emb|CAX62877.1| RNA polymerase 2 [Chathamia integripennis]
          Length = 257

 Score =  488 bits (1257), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/303 (78%), Positives = 250/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|283549561|emb|CAX62860.1| RNA polymerase 2 [Alloecentrella sp. BP8]
 gi|283549573|emb|CAX62866.1| RNA polymerase 2 [Periwinkla childi]
 gi|283549591|emb|CAX62875.1| RNA polymerase 2 [Caloca ascita]
 gi|283549601|emb|CAX62880.1| RNA polymerase 2 [Costora seposita]
          Length = 257

 Score =  488 bits (1257), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/303 (78%), Positives = 250/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHE  GRFYGNIQTVVNNWLLL+G                       
Sbjct: 61  SAGSLLHICMLELGHETAGRFYGNIQTVVNNWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|317417228|emb|CBI70644.1| RNA polymerase II [Lectrides varians]
 gi|317417230|emb|CBI70645.1| RNA polymerase II [Lectrides varians]
 gi|317417240|emb|CBI70650.1| RNA polymerase II [Triplectides volda]
 gi|317417304|emb|CBI70682.1| RNA polymerase II [Leptocerus stephanei]
          Length = 257

 Score =  488 bits (1257), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/303 (78%), Positives = 251/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLL+G                       
Sbjct: 61  SAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|158632454|gb|ABW75623.1| RNA polymerase 2 [Melitta tricincta]
          Length = 271

 Score =  488 bits (1256), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/300 (79%), Positives = 248/300 (82%), Gaps = 46/300 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHS+HPDDED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSSHPDDEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 271



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/29 (96%), Positives = 29/29 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHF 1037
            +QVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPHF 271


>gi|283549555|emb|CAX62857.1| RNA polymerase 2 [Rakiura vernale]
          Length = 257

 Score =  488 bits (1256), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/303 (78%), Positives = 250/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269991601|emb|CAX37921.1| RNA polymerase II [Hydropsyche sp. EX4]
          Length = 257

 Score =  488 bits (1256), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHE  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHETAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQT ENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTXENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (350), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755642|gb|ADO86655.1| RNA polymerase II [Agmina urugi]
          Length = 257

 Score =  488 bits (1255), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYXWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755782|gb|ADO86725.1| RNA polymerase II [Agmina sp. 1 ME-2010]
          Length = 257

 Score =  488 bits (1255), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 250/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  137 bits (346), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269991447|emb|CAX37853.1| RNA polymerase II [Orthopsyche thomasi]
 gi|289779493|emb|CAX52790.1| RNA polymerase II large subunit [Orthopsyche thomasi]
          Length = 257

 Score =  488 bits (1255), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHE  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHETAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRIL DARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILXDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|157472180|gb|ABV57379.1| RNA polymerase II [Arhysosage ochracea]
          Length = 275

 Score =  488 bits (1255), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/299 (79%), Positives = 247/299 (82%), Gaps = 46/299 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 23  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 82

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 83  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 142

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 143 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 196

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 197 ----------------------------------------NTLRQTFENQVNRILNDARD 216

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 217 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 275



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/28 (96%), Positives = 28/28 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPH 1036
            +QVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 248  SQVIACVGQQNVEGKRIPFGFRKRTLPH 275



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/23 (86%), Positives = 22/23 (95%)

Query: 1509 MGIVQDTLTAVRKMTKRDVFLDK 1531
            M IVQDTLTAVRKMTKRDVF++K
Sbjct: 1    MVIVQDTLTAVRKMTKRDVFIEK 23


>gi|309755558|gb|ADO86613.1| RNA polymerase II [Agmina sp. 12 ME-2010]
          Length = 257

 Score =  488 bits (1255), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELXMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269991451|emb|CAX37855.1| RNA polymerase II [Diplectrona zealandensis]
          Length = 257

 Score =  487 bits (1254), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+F+LIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFTLIIPGNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHE  GRFYGNIQTVVN WLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHETAGRFYGNIQTVVNTWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|62911711|gb|AAY21486.1| RNA polymerase II [Euryglossa ephippiata]
          Length = 258

 Score =  487 bits (1254), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/302 (79%), Positives = 249/302 (82%), Gaps = 46/302 (15%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGIGDTIADPQ
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQ 120

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
           TYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                           
Sbjct: 121 TYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG--------------------------- 153

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
                              NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 154 -------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL  L
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLCWL 254

Query: 393 TP 394
           TP
Sbjct: 255 TP 256



 Score =  110 bits (274), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/52 (94%), Positives = 50/52 (96%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 1060
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL  LTP
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLCWLTP 256


>gi|317417140|emb|CBI70600.1| RNA polymerase II [Kokiria miharo]
          Length = 256

 Score =  487 bits (1254), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/302 (78%), Positives = 249/302 (82%), Gaps = 46/302 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDDEDEGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHE  GRFYGNIQTVVNNWLLL+G                       
Sbjct: 61  SAGSLLHICMLELGHETAGRFYGNIQTVVNNWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTY+EIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYIEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GG 404
           GG
Sbjct: 255 GG 256



 Score =  136 bits (343), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/62 (96%), Positives = 62/62 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GG 1070
            GG
Sbjct: 255  GG 256


>gi|283549577|emb|CAX62868.1| RNA polymerase 2 [Eosericostoma inaequispinum]
          Length = 257

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 250/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLL+G                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|158632400|gb|ABW75596.1| RNA polymerase 2 [Camptopoeum negevense]
          Length = 270

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/299 (79%), Positives = 247/299 (82%), Gaps = 46/299 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 270



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/28 (96%), Positives = 28/28 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPH 1036
            +QVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPH 270


>gi|158632382|gb|ABW75587.1| RNA polymerase 2 [Alocandrena porterae]
          Length = 264

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/301 (78%), Positives = 248/301 (82%), Gaps = 46/301 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDG MPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 10  KEQMMNILMFLPSWDGNMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 69

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 70  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 129

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 130 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 183

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 184 ----------------------------------------NTLRQTFENQVNRILNDARD 203

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 204 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 263

Query: 372 I 372
           I
Sbjct: 264 I 264



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/30 (96%), Positives = 30/30 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFI 1038
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFI
Sbjct: 235  SQVIACVGQQNVEGKRIPFGFRKRTLPHFI 264


>gi|317417286|emb|CBI70673.1| RNA polymerase II [Leptocerina ramosa]
          Length = 257

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 251/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLL+G                       
Sbjct: 61  SAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ +IKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQNSIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|283549559|emb|CAX62859.1| RNA polymerase 2 [Zelolessica cheira]
 gi|283549563|emb|CAX62861.1| RNA polymerase 2 [Beraeoptera roria]
 gi|283549581|emb|CAX62870.1| RNA polymerase 2 [Pliocaloca sp. CQ3]
 gi|283549585|emb|CAX62872.1| RNA polymerase 2 [Calocoides aquilonia]
 gi|283549593|emb|CAX62876.1| RNA polymerase 2 [Conoesucus cf. norelus KAJ-2009]
 gi|317417330|emb|CBI70695.1| RNA polymerase II [Molannodes tinctus]
 gi|317417334|emb|CBI70697.1| RNA polymerase II [Atriplectides dubius]
 gi|317417344|emb|CBI70702.1| RNA polymerase II [Atriplectides dubius]
          Length = 257

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 250/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLL+G                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|157841496|gb|ABV83214.1| RNA polymerase 2 [Rhabditoides inermis]
          Length = 630

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 252/427 (59%), Positives = 307/427 (71%), Gaps = 43/427 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V GED++SKQA  NATLL   LVRSTLC+K +AE+Y+L+SEAFEWL+GE+E RFQQA  I
Sbjct: 224  VGGEDRISKQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEWLLGEVETRFQQA--I 281

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
            A  G+                 P   +    P ++  +   + AG++           +E
Sbjct: 282  AQPGEM--------------VGPLAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKE 327

Query: 1073 GLIDTAVKTAETVNVLVFL-----------------------FQVTANTAIYYDPDPQNT 1109
              I    K  +T ++ VFL                        +VTANTAIYYDPDP+NT
Sbjct: 328  --IINVSKQPKTPSLTVFLEGAAAKDAEKAKDVLCKLEHTTLKKVTANTAIYYDPDPKNT 385

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
             I ED+E+V+++YEMPDFDP+R SPWLLR+ELDRKRMTDKKLTME I+E+I+ GFGDDLN
Sbjct: 386  CIAEDEEWVSIFYEMPDFDPSRASPWLLRMELDRKRMTDKKLTMEQIAERIHQGFGDDLN 445

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNA+KLV R+RI N D+ K   +E+ +DKMEDD+FLRCIE+NMLSD+TLQGIEAI
Sbjct: 446  VIYTDDNADKLVFRLRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGIEAI 503

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYMH P TD KK+I+IT  G FKAI  WLLETDGT+L+KVLSER+VD +RT SNDICE
Sbjct: 504  AKVYMHKPTTDDKKKIVITPDGSFKAIEQWLLETDGTALLKVLSERNVDTIRTTSNDICE 563

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 1349
            IF++LGIEAVRKS+EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR + 
Sbjct: 564  IFEILGIEAVRKSIEKEMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRXEV 623

Query: 1350 GALMRCS 1356
            GALMRCS
Sbjct: 624  GALMRCS 630



 Score =  202 bits (515), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/129 (73%), Positives = 112/129 (86%)

Query: 361 FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGY 420
           FGFR R+LPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGY
Sbjct: 1   FGFRHRSLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTAETGY 60

Query: 421 IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDK 480
           IQRRLIKAMESVMV+YD TVRNS+ QLIQLRYGEDGL G  VE+Q + ++  ++  F+  
Sbjct: 61  IQRRLIKAMESVMVNYDGTVRNSLAQLIQLRYGEDGLDGMWVENQSMPSMKPNNALFKRD 120

Query: 481 YRFDPSNER 489
           ++ D ++ +
Sbjct: 121 FKLDITDTK 129



 Score =  180 bits (457), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 89/152 (58%), Positives = 108/152 (71%), Gaps = 30/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+NT I ED+E+V+++YEMPDFDP+R SPWLLR+ELDRKRMTDKK
Sbjct: 367  LKKVTANTAIYYDPDPKNTCIAEDEEWVSIFYEMPDFDPSRASPWLLRMELDRKRMTDKK 426

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+E+I+ GFG                            DDLN I+ DDNA+KLV 
Sbjct: 427  LTMEQIAERIHQGFG----------------------------DDLNVIYTDDNADKLVF 458

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N D+ K   +E+ +DKMEDD+FLRCIE
Sbjct: 459  RLRITNQDNDK--GDEEQIDKMEDDVFLRCIE 488



 Score =  127 bits (319), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/84 (69%), Positives = 68/84 (80%)

Query: 1027 FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVN 1086
            FGFR R+LPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAET  
Sbjct: 1    FGFRHRSLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTAETGY 60

Query: 1087 VLVFLFQVTANTAIYYDPDPQNTV 1110
            +   L +   +  + YD   +N++
Sbjct: 61   IQRRLIKAMESVMVNYDGTVRNSL 84



 Score =  126 bits (317), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 100/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ QLIQLRYGEDGL G  VE+Q + ++  ++  F+
Sbjct: 59  GYIQRRLIKAMESVMVNYDGTVRNSLAQLIQLRYGEDGLDGMWVENQSMPSMKPNNALFK 118

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             ++ D ++ + L++++ E+V+R+L  + D + E                          
Sbjct: 119 RDFKLDITDTKALKKMYTEEVIRDLQSNPDALKE-------------------------- 152

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                    +E EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 153 ---------VECEWAQLEEDRRLLRKIFPKGDAKIVLPCNLQRLIWNAQK 193



 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 59/70 (84%), Gaps = 3/70 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  +L   +VRKS+EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 561 ICEIFEILGIEAVRKSIEKEMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 620

Query: 830 QDTGALMRCS 839
            + GALMRCS
Sbjct: 621 XEVGALMRCS 630



 Score =  100 bits (249), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 49/55 (89%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 570
           S+EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR + GALMRCS
Sbjct: 576 SIEKEMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRXEVGALMRCS 630


>gi|309755850|gb|ADO86759.1| RNA polymerase II [Agmina kara]
          Length = 257

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNR LNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRXLNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755688|gb|ADO86678.1| RNA polymerase II [Agmina sp. 18 ME-2010]
          Length = 257

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSL IPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLXIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755526|gb|ADO86597.1| RNA polymerase II [Agmina sp. 21 ME-2010]
 gi|309755644|gb|ADO86656.1| RNA polymerase II [Agmina jepiva]
 gi|309755716|gb|ADO86692.1| RNA polymerase II [Agmina sp. 53 ME-2010]
          Length = 257

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HS GIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSXGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269991557|emb|CAX37899.1| RNA polymerase II [Orthopsyche vrupama]
 gi|269991573|emb|CAX37907.1| RNA polymerase II [Orthopsyche pakaha]
          Length = 257

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDV EVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVXEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755822|gb|ADO86745.1| RNA polymerase II [Agmina sp. 7 ME-2010]
 gi|309755832|gb|ADO86750.1| RNA polymerase II [Agmina artarima]
          Length = 257

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKS TEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSXTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755780|gb|ADO86724.1| RNA polymerase II [Agmina sp. 28 ME-2010]
          Length = 257

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG  +MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGEXIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755616|gb|ADO86642.1| RNA polymerase II [Agmina sp. 38 ME-2010]
 gi|309755626|gb|ADO86647.1| RNA polymerase II [Agmina sp. 31 ME-2010]
          Length = 257

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FS IIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSXIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|289779557|emb|CAX52825.1| RNA polymerase II large subunit [Ecnomina sp. EH8]
          Length = 257

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGI CKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGIXCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755848|gb|ADO86758.1| RNA polymerase II [Agmina rhara]
          Length = 257

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFI DDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIXDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  136 bits (343), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFI DDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIXDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755576|gb|ADO86622.1| RNA polymerase II [Agmina sp. 31 ME-2010]
          Length = 257

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRXRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  136 bits (343), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRXRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269991623|emb|CAX37932.1| RNA polymerase II [Diplectrona sp. FV8]
          Length = 257

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AI KAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIXKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269991611|emb|CAX37926.1| RNA polymerase II [Potamyia elektra]
          Length = 257

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNL AMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLXAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|289779533|emb|CAX52811.1| RNA polymerase II large subunit [Caledopsyche kimminsi]
          Length = 257

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/302 (78%), Positives = 249/302 (82%), Gaps = 46/302 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GG 404
           GG
Sbjct: 255 GG 256



 Score =  136 bits (343), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/62 (96%), Positives = 62/62 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GG 1070
            GG
Sbjct: 255  GG 256


>gi|269991527|emb|CAX37884.1| RNA polymerase II [Caledopsyche kimminsi]
          Length = 256

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/302 (78%), Positives = 249/302 (82%), Gaps = 46/302 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GG 404
           GG
Sbjct: 255 GG 256



 Score =  136 bits (343), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/62 (96%), Positives = 62/62 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GG 1070
            GG
Sbjct: 255  GG 256


>gi|262303423|gb|ACY44304.1| RNA polymerase largest subunit [Acheta domesticus]
          Length = 654

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/298 (79%), Positives = 247/298 (82%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 17  KEQMMNLLMFLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHICFLELGHEVCG+FYGNIQTVV
Sbjct: 77  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGQFYGNIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 137 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 190

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 191 ----------------------------------------NTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 211 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 268



 Score =  263 bits (671), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 145/227 (63%), Positives = 157/227 (69%), Gaps = 32/227 (14%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG+D LSKQAN+NATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 454  VAGDDHLSKQANKNATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVS 513

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
               G   V  K +  G  +  L   I     P++             PS   F       
Sbjct: 514  PXAG---VSSKNVTLGVPR--LKEIINISKKPKA-------------PSLTVF------- 548

Query: 1073 GLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD 1126
             L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVNVYYEMPD
Sbjct: 549  -LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPD 607

Query: 1127 FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFN 1173
            FDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFN
Sbjct: 608  FDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFN 654



 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 92/158 (58%), Positives = 106/158 (67%), Gaps = 35/158 (22%)

Query: 604 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERQ 663
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDP+NER 
Sbjct: 307 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKFDPTNERH 366

Query: 664 LRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEK 723
           LRRIFNED+++ELMGSGDVISELEKE                                  
Sbjct: 367 LRRIFNEDIMKELMGSGDVISELEKE---------------------------------- 392

Query: 724 EWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
            WE+L +DREALR+IF SGES VVLPCNL   IF + +
Sbjct: 393 -WEQLVKDREALRQIFPSGESKVVLPCNLQRXIFHINK 429



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/79 (94%), Positives = 76/79 (96%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 572  LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 631

Query: 1589 LTMEAISEKINAGFGDDLN 1607
            LTME I+EKINAGFGDDLN
Sbjct: 632  LTMEQIAEKINAGFGDDLN 650



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 68/99 (68%), Gaps = 10/99 (10%)

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDP+NER 
Sbjct: 307 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKFDPTNER- 365

Query: 491 TLRNVSSLRRVVNS---KPLLIGCWKLTSVEKEMNTVLQ 526
                  LRR+ N    K L+     ++ +EKE   +++
Sbjct: 366 ------HLRRIFNEDIMKELMGSGDVISELEKEWEQLVK 398



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 27/27 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            +QVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLP 268


>gi|289779619|emb|CAX52857.1| RNA polymerase II large subunit [Agmina sp. EM9]
          Length = 257

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+V HG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVXHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269991461|emb|CAX37860.1| RNA polymerase II [Orthopsyche mcfarlanei]
 gi|289779505|emb|CAX52796.1| RNA polymerase II large subunit [Orthopsyche mcfarlanei]
          Length = 257

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC L LGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLXLGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755646|gb|ADO86657.1| RNA polymerase II [Agmina kapiwa]
 gi|309755706|gb|ADO86687.1| RNA polymerase II [Agmina cf. kapiwa ME-2010]
 gi|309755836|gb|ADO86752.1| RNA polymerase II [Agmina sp. 56 ME-2010]
          Length = 257

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHP +ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPXEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269991493|emb|CAX37876.1| RNA polymerase II [Caledopsyche erotos]
 gi|269991495|emb|CAX37877.1| RNA polymerase II [Caledopsyche erotos]
 gi|289779527|emb|CAX52807.1| RNA polymerase II large subunit [Caledopsyche erotos]
          Length = 257

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILN ARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNXARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|158632452|gb|ABW75622.1| RNA polymerase 2 [Melitta nigricans]
          Length = 262

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/300 (78%), Positives = 248/300 (82%), Gaps = 46/300 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHS+HPD+ED G
Sbjct: 9   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSSHPDEEDDG 68

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 69  PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 128

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 129 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 182

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 183 ----------------------------------------NTLRQTFENQVNRILNDARD 202

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 203 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 262



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/29 (96%), Positives = 29/29 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHF 1037
            +QVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 234  SQVIACVGQQNVEGKRIPFGFRKRTLPHF 262


>gi|309755666|gb|ADO86667.1| RNA polymerase II [Agmina sp. 19 ME-2010]
          Length = 257

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE +FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEXYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE +FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEXYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269991613|emb|CAX37927.1| RNA polymerase II [Potamyia flavata]
          Length = 257

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIP GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPXGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIP GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPXGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269991579|emb|CAX37910.1| RNA polymerase II [Orthopsyche schefterae]
          Length = 257

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRG VENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGXVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRG VENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGXVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755840|gb|ADO86754.1| RNA polymerase II [Agmina sp. 4 ME-2010]
          Length = 257

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPG TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGXTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755580|gb|ADO86624.1| RNA polymerase II [Agmina sp. 37 ME-2010]
 gi|309755690|gb|ADO86679.1| RNA polymerase II [Agmina sp. 37 ME-2010]
          Length = 257

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYG IQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGXIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|289779487|emb|CAX52786.1| RNA polymerase II large subunit [Zelandoptila moselyi]
          Length = 257

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNI I
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNIXI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755794|gb|ADO86731.1| RNA polymerase II [Agmina vuegi]
          Length = 257

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTH D+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHXDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|320166366|gb|EFW43265.1| polymerase II polypeptide A [Capsaspora owczarzaki ATCC 30864]
          Length = 1792

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/410 (57%), Positives = 288/410 (70%), Gaps = 46/410 (11%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           MM +LM+LP W G +PQP ILKP+P+WTGKQ+FS+IIP  VN+TRTHSTH D+ED G Y 
Sbjct: 577 MMQLLMWLPGWTGHVPQPAILKPRPMWTGKQIFSMIIPAEVNLTRTHSTHDDEEDKGNYV 636

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            +SP DTKV++E G LL GI+CKK+LG S+G L+HI F E GHEV   F+   Q VVN W
Sbjct: 637 HMSPSDTKVLIEKGRLLSGIICKKTLGPSAGGLIHILFKEWGHEVARNFFNACQRVVNYW 696

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           L+ EG                                              HSIGIGD +
Sbjct: 697 LMWEG----------------------------------------------HSIGIGDAV 710

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD  T ++++ AI++AKEDV +V++ A +  LE TPGNTLR+TFEN+VN+ LN+AR+  G
Sbjct: 711 ADDATMMQVEDAIRRAKEDVKKVVESAQHGRLESTPGNTLRETFENEVNKYLNNAREDAG 770

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
              + SL ++NN + M VAGSKGS +NISQVIACVGQQNVEGKRIPFGFR RTLPHF+KD
Sbjct: 771 KKVQDSLGDFNNFRLMAVAGSKGSVLNISQVIACVGQQNVEGKRIPFGFRFRTLPHFVKD 830

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTPSEFFFHAMGGREG+IDTAVKT+ETGYIQRRL+K ME VMV
Sbjct: 831 DYGPESRGFVENSYLKGLTPSEFFFHAMGGREGVIDTAVKTSETGYIQRRLVKCMEDVMV 890

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            YD TVRNS+G +IQ  YGEDGL G  +E      +A ++ +F   Y++D
Sbjct: 891 KYDGTVRNSLGDVIQFVYGEDGLDGAHLEFGNQPILAPNNDRFNSLYKYD 940



 Score =  399 bits (1024), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 230/494 (46%), Positives = 306/494 (61%), Gaps = 32/494 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D +S +A  NA  LF   +RS L +K V   +RL S+AFEWL+GEIE+RFQQA+V 
Sbjct: 1041 VKGSDPISVEAQNNAICLFGIHLRSVLNSKRVLLEHRLHSQAFEWLLGEIESRFQQAKVE 1100

Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYG------PESRGFVENSYLAGLTPS-EF 1063
                VG    +    P         HF            P  R  + N   +  TPS   
Sbjct: 1101 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLRELI-NVSKSPKTPSLTV 1159

Query: 1064 FFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYE 1123
            +  +   +E   D A +   T      L ++T +T IYYDP+P  +V+ EDQ FVN YYE
Sbjct: 1160 YLQSGMDQERAKDVACRLEHTT-----LLKITTHTEIYYDPNPLASVVEEDQSFVNDYYE 1214

Query: 1124 MPDFDP---TRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1180
            MPD DP     ISPWLLR+ELDRK+M  ++LTME ++EKI A FG+DL+ IF+DDNA+KL
Sbjct: 1215 MPD-DPEILKHISPWLLRMELDRKQMEYRRLTMERVAEKITADFGNDLHVIFSDDNADKL 1273

Query: 1181 VLRIRIM------NSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYM 1234
            +L+IR++      + +      E++      DD FLR +  N L  +TLQG+E I KVYM
Sbjct: 1274 ILQIRMLKKTSEGDGESGDKNPEDELRSGAADDTFLRKLIPNYLWPLTLQGLEDIAKVYM 1333

Query: 1235 HLPQTDSKKRIIITESGEF---KAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIF 1291
                T   ++     +G     K + +W+LETDG+SL+  LS+ +VD  RT SNDI EI 
Sbjct: 1334 ----TQKNRKHFHPVTGALVNDKNVKEWVLETDGSSLLLALSQPNVDVTRTVSNDIVEIM 1389

Query: 1292 QVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 1351
            +VLG+EAVR+S+ KEM+ V   YG+Y+NYRHLALLCDVMTA+GH+MA+TRHGIN  DTG 
Sbjct: 1390 RVLGVEAVRQSLFKEMHAVYSLYGIYINYRHLALLCDVMTARGHIMAVTRHGINGLDTGP 1449

Query: 1352 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI 1411
            LMRCSFEETV++L+ AA H+E D +RG SENII+GQL  +GTG FDLLL+ +  +  +E+
Sbjct: 1450 LMRCSFEETVEILVTAAQHSETDWLRGPSENIILGQLAPVGTGYFDLLLNEKMLEHAVEM 1509

Query: 1412 PLATGMMGGPAGMF 1425
            P   G+     GMF
Sbjct: 1510 PQTFGVNAFMDGMF 1523



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/187 (48%), Positives = 126/187 (67%), Gaps = 8/187 (4%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ V +VR+S+ KEM+ V   YG+Y+NYRHLALLCDVMTA+GH+MA+TRHGIN  DT
Sbjct: 1388 IMRVLGVEAVRQSLFKEMHAVYSLYGIYINYRHLALLCDVMTARGHIMAVTRHGINGLDT 1447

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G LMRCSFEETV++L+ AA H+E D +RG SENII+GQL  +GTG FDLLL+ +  +  +
Sbjct: 1448 GPLMRCSFEETVEILVTAAQHSETDWLRGPSENIILGQLAPVGTGYFDLLLNEKMLEHAV 1507

Query: 893  EIPLATGMMGGPAGMF--FGSAATPSSMSPQMTPWAQSTPAYNALMSP----GAAMTPGG 946
            E+P   G+     GMF   G ++  + +SP       +   Y ++ SP     AA +P G
Sbjct: 1508 EMPQTFGVNAFMDGMFDPLGISSPSAGLSPMAVTQYHTNEGY-SVYSPNSPSNAAFSPAG 1566

Query: 947  -PGFSPS 952
               FSP+
Sbjct: 1567 NASFSPA 1573



 Score =  160 bits (404), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 79/124 (63%), Positives = 93/124 (75%), Gaps = 5/124 (4%)

Query: 987  NYRLSSEAFEWLVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPES 1046
            N+RL + A     G   +    +QVIACVGQQNVEGKRIPFGFR RTLPHF+KDDYGPES
Sbjct: 782  NFRLMAVA-----GSKGSVLNISQVIACVGQQNVEGKRIPFGFRFRTLPHFVKDDYGPES 836

Query: 1047 RGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDP 1106
            RGFVENSYL GLTPSEFFFHAMGGREG+IDTAVKT+ET  +   L +   +  + YD   
Sbjct: 837  RGFVENSYLKGLTPSEFFFHAMGGREGVIDTAVKTSETGYIQRRLVKCMEDVMVKYDGTV 896

Query: 1107 QNTV 1110
            +N++
Sbjct: 897  RNSL 900



 Score =  121 bits (304), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 71/94 (75%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            S+ KEM+ V   YG+Y+NYRHLALLCDVMTA+GH+MA+TRHGIN  DTG LMRCSFEETV
Sbjct: 1400 SLFKEMHAVYSLYGIYINYRHLALLCDVMTARGHIMAVTRHGINGLDTGPLMRCSFEETV 1459

Query: 576  DVLMDAAAHAEADPMRGYIQRRLIKAMESVMVHY 609
            ++L+ AA H+E D +RG  +  ++  +  V   Y
Sbjct: 1460 EILVTAAQHSETDWLRGPSENIILGQLAPVGTGY 1493



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 90/158 (56%), Gaps = 38/158 (24%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDP---TRISPWLLRIELDRKRMT 1585
            L K+T +T IYYDP+P  +V+ EDQ FVN YYEMPD DP     ISPWLLR+ELDRK+M 
Sbjct: 1182 LLKITTHTEIYYDPNPLASVVEEDQSFVNDYYEMPD-DPEILKHISPWLLRMELDRKQME 1240

Query: 1586 DKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1645
             ++LTME ++EKI A F                            G+DL+ IF+DDNA+K
Sbjct: 1241 YRRLTMERVAEKITADF----------------------------GNDLHVIFSDDNADK 1272

Query: 1646 LVLRIRIM------NSDDSKMQDEEDAVDKMEDDMFLR 1677
            L+L+IR++      + +      E++      DD FLR
Sbjct: 1273 LILQIRMLKKTSEGDGESGDKNPEDELRSGAADDTFLR 1310



 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 79/172 (45%), Gaps = 38/172 (22%)

Query: 592  GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
            GYIQRRL+K ME VMV YD TVRNS+G +IQ  YGEDGL G  +E      +A ++ +F 
Sbjct: 875  GYIQRRLVKCMEDVMVKYDGTVRNSLGDVIQFVYGEDGLDGAHLEFGNQPILAPNNDRFN 934

Query: 652  DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
              Y++D     +L      ++   +M           EM D                   
Sbjct: 935  SLYKYDDKTLNELSVRLTPEIYENVM---------TVEMQD------------------- 966

Query: 712  MGSGDVISELEKEWEKLCEDREALREIFSSGES--NVVLPCNLMEVIFILQR 761
                     LE+E+ +L  DR  LR +F +G    +  +P N+  +I+  Q+
Sbjct: 967  --------ALEREFNQLATDRTLLRALFPTGSGMLDAAVPVNVPRLIWNAQK 1010



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 36/50 (72%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           E+   LG +P+  RPDWM++TVLPVPP++VRP+VVM   AR  + + + L
Sbjct: 247 EDCRALGFNPEQGRPDWMIITVLPVPPMTVRPSVVMDSVARGIDDLTHKL 296



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 31/42 (73%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 1530
            V  I    RQI+TP  NRPVMGIVQDTLT  RK+TKRD F++
Sbjct: 532  VTEIMSVSRQILTPAGNRPVMGIVQDTLTGSRKLTKRDTFIE 573


>gi|269991449|emb|CAX37854.1| RNA polymerase II [Hydroptila simulans]
          Length = 257

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S GSLLHIC LELGHE  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SGGSLLHICMLELGHETAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADP TY+EIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPLTYIEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269991519|emb|CAX37880.1| RNA polymerase II [Caledopsyche leander]
 gi|289779531|emb|CAX52810.1| RNA polymerase II large subunit [Caledopsyche leander]
          Length = 257

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQT LEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTXLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269991459|emb|CAX37859.1| RNA polymerase II [Orthopsyche tneda]
 gi|289779503|emb|CAX52795.1| RNA polymerase II large subunit [Orthopsyche tneda]
          Length = 257

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS LAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSXLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS LAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSXLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|71480586|gb|AAZ32218.1| RNA polymerase II large subunit [Martinapis luteicornis]
          Length = 270

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/299 (78%), Positives = 247/299 (82%), Gaps = 46/299 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 270



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/28 (96%), Positives = 28/28 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPH 1036
            +QVIACVGQQNVEGKRIPFGFRKRTLPH
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLPH 270


>gi|283476434|emb|CAY54371.1| RNA polymerase 2 [Ecnomus sp. GM3]
 gi|289779547|emb|CAX52820.1| RNA polymerase II large subunit [Ecnomus continentalis]
 gi|289779553|emb|CAX52823.1| RNA polymerase II large subunit [Ecnomus cygnitus]
 gi|289779565|emb|CAX52830.1| RNA polymerase II large subunit [Psychomyiellodes sp. EJ2]
 gi|289779569|emb|CAX52832.1| RNA polymerase II large subunit [Ecnomus sp. EJ4]
 gi|289779571|emb|CAX52833.1| RNA polymerase II large subunit [Ecnomus similis]
 gi|289779575|emb|CAX52835.1| RNA polymerase II large subunit [Ecnomus sp. EK2]
 gi|289779589|emb|CAX52842.1| RNA polymerase II large subunit [Ecnomus sp. EL1]
 gi|289779591|emb|CAX52843.1| RNA polymerase II large subunit [Ecnomus sp. EL2]
 gi|289779593|emb|CAX52844.1| RNA polymerase II large subunit [Ecnomus sp. EL3]
 gi|289779595|emb|CAX52845.1| RNA polymerase II large subunit [Ecnomus sp. EL4]
 gi|289779597|emb|CAX52846.1| RNA polymerase II large subunit [Ecnomus sp. EL5]
 gi|289779603|emb|CAX52849.1| RNA polymerase II large subunit [Ecnomus atratus]
 gi|289779673|emb|CAX52887.1| RNA polymerase II large subunit [Ecnomus tenellus]
          Length = 257

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCK++LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKRTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTY EIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYTEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755654|gb|ADO86661.1| RNA polymerase II [Agmina acula]
          Length = 257

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGG AKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGFAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269991483|emb|CAX37871.1| RNA polymerase II [Abacaria caledona]
 gi|269991617|emb|CAX37929.1| RNA polymerase II [Diplectrona castanea]
 gi|289779523|emb|CAX52805.1| RNA polymerase II large subunit [Abacaria caledona]
          Length = 257

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
            M+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 IMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755816|gb|ADO86742.1| RNA polymerase II [Agmina sp. 31 ME-2010]
          Length = 257

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEGX---------------------- 98

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                   SIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 99  ------------------------SIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|289779567|emb|CAX52831.1| RNA polymerase II large subunit [Psychomyiellodes excavatus]
          Length = 257

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCK++LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKRTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTY EIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYTEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|283476432|emb|CAY54370.1| RNA polymerase 2 [Agmina hastata]
 gi|289779629|emb|CAX52863.1| RNA polymerase II large subunit [Daternomina thinotes]
          Length = 257

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+F AM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFXAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+F AM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFXAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269991551|emb|CAX37896.1| RNA polymerase II [Caledopsyche erotos]
          Length = 257

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VE G L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEXGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269991489|emb|CAX37874.1| RNA polymerase II [Caledopsyche cheesmanae]
 gi|289779525|emb|CAX52806.1| RNA polymerase II large subunit [Caledopsyche cheesmanae]
          Length = 257

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELG +  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGXDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|283476438|emb|CAY54373.1| RNA polymerase 2 [Ecnomus sp. GM5]
          Length = 257

 Score =  485 bits (1248), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQVFSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCK++LGT
Sbjct: 1   GKQVFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKRTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH++ GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDIAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTY EIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYTEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSN NI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNXNI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|283836868|emb|CAX52788.1| RNA polymerase II large subunit [Hydrobiosella uncinata]
          Length = 257

 Score =  484 bits (1247), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+F+LIIPGNVNM RTHSTHP +ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFTLIIPGNVNMIRTHSTHPXEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHE  GRFYGNIQTVVNNWLLL+G                       
Sbjct: 61  SAGSLLHICMLELGHETAGRFYGNIQTVVNNWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|317417314|emb|CBI70687.1| RNA polymerase II [Anisocentropus sp. TM-2009]
          Length = 257

 Score =  484 bits (1247), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FS IIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSXIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLL+G                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269992197|emb|CAX51720.1| RNA polymerase II [Caledopsyche phallaina]
 gi|283836870|emb|CAX52809.1| RNA polymerase II large subunit [Caledopsyche phallaina]
          Length = 257

 Score =  484 bits (1247), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+ GT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTXGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKR PFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRXPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  136 bits (343), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKR PFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRXPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755536|gb|ADO86602.1| RNA polymerase II [Agmina sp. 18 ME-2010]
          Length = 257

 Score =  484 bits (1247), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEG RIPFGFRKRTLPHF KDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGXRIPFGFRKRTLPHFXKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  134 bits (338), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/63 (93%), Positives = 61/63 (96%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEG RIPFGFRKRTLPHF KDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGXRIPFGFRKRTLPHFXKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755520|gb|ADO86594.1| RNA polymerase II [Agmina sp. 53 ME-2010]
          Length = 257

 Score =  484 bits (1247), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELG    GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGXXTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|289779495|emb|CAX52791.1| RNA polymerase II large subunit [Tinodes waeneri]
          Length = 257

 Score =  484 bits (1246), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 247/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELXMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHE  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHETAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           S VIACVGQQNVEGKRIPFGFRKRTLPHFIK DYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SXVIACVGQQNVEGKRIPFGFRKRTLPHFIKXDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  134 bits (336), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/63 (93%), Positives = 61/63 (96%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            + VIACVGQQNVEGKRIPFGFRKRTLPHFIK DYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SXVIACVGQQNVEGKRIPFGFRKRTLPHFIKXDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755674|gb|ADO86671.1| RNA polymerase II [Agmina sp. 45 ME-2010]
          Length = 257

 Score =  484 bits (1246), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+ GT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTXGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFI DDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIXDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  136 bits (343), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFI DDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIXDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|283549557|emb|CAX62858.1| RNA polymerase 2 [Olinga feredayi]
          Length = 257

 Score =  484 bits (1246), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNI TVVNNWLLL+G                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIXTVVNNWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|289779555|emb|CAX52824.1| RNA polymerase II large subunit [Ecnomus tillyardi]
          Length = 257

 Score =  484 bits (1246), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCK++LGT
Sbjct: 1   GKQXFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKRTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTY EIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYTEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|317417300|emb|CBI70680.1| RNA polymerase II [Setodes flagellatus]
          Length = 257

 Score =  484 bits (1246), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPDDE  GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDDEXDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKE VIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEXVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQV ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVXACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  136 bits (343), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QV ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVXACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|317417342|emb|CBI70701.1| RNA polymerase II [Atanatolica penai]
          Length = 257

 Score =  484 bits (1246), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 250/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+F+LIIPGNVNM RTHSTHPD+ED GP +WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFTLIIPGNVNMIRTHSTHPDEEDDGPXKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLL+G                       
Sbjct: 61  SAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755638|gb|ADO86653.1| RNA polymerase II [Agmina vuegi]
          Length = 257

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+ GT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTXGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNV GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVXGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  136 bits (343), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNV GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVXGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|317417336|emb|CBI70698.1| RNA polymerase II [Phylloicus lituratus]
          Length = 257

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY WISPGDTKV+VE G L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYXWISPGDTKVMVEXGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|157472182|gb|ABV57380.1| RNA polymerase II [Perdita trisignata]
          Length = 260

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/299 (78%), Positives = 246/299 (82%), Gaps = 46/299 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 8   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 67

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 68  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 127

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 128 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 181

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 182 ----------------------------------------NTLRQTFENQVNRILNDARD 201

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFG RKRTLPH
Sbjct: 202 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGLRKRTLPH 260



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/28 (92%), Positives = 27/28 (96%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPH 1036
            +QVIACVGQQNVEGKRIPFG RKRTLPH
Sbjct: 233  SQVIACVGQQNVEGKRIPFGLRKRTLPH 260


>gi|283476444|emb|CAY54376.1| RNA polymerase 2 [Daternomina sp. GM8]
          Length = 257

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFEN VNRILNDARDKTGGSAKKSLT YNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENXVNRILNDARDKTGGSAKKSLTXYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|317417316|emb|CBI70688.1| RNA polymerase II [Limnephilus centralis]
          Length = 257

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/303 (77%), Positives = 250/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHE  GRFYGNIQTV+N+WLLL+G                       
Sbjct: 61  SAGSLLHICMLELGHETAGRFYGNIQTVINHWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTY+EIQ +IKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYIEIQNSIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755522|gb|ADO86595.1| RNA polymerase II [Agmina sp. 36 ME-2010]
          Length = 257

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FS IIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSXIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYG ESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGQESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYG ESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGQESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755746|gb|ADO86707.1| RNA polymerase II [Agmina sp. 29 ME-2010]
 gi|309755756|gb|ADO86712.1| RNA polymerase II [Agmina sp. 29 ME-2010]
          Length = 257

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQ AH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQXAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILN ARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNXARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|317417310|emb|CBI70685.1| RNA polymerase II [Ganonema ochraceellum]
          Length = 254

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/300 (79%), Positives = 247/300 (82%), Gaps = 46/300 (15%)

Query: 106 VFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSG 165
           +FSLIIPGNVNM RTHSTHPDDED GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+G
Sbjct: 1   IFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAG 60

Query: 166 SLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAK 225
           SLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                          
Sbjct: 61  SLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG-------------------------- 94

Query: 226 EDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMD 285
                               HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+
Sbjct: 95  --------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAHNME 134

Query: 286 LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQV 345
           LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQV
Sbjct: 135 LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQV 194

Query: 346 IACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 405
           IACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 195 IACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 254



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 192  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 251

Query: 1069 GGR 1071
            GGR
Sbjct: 252  GGR 254


>gi|317417180|emb|CBI70620.1| RNA polymerase II [Ceraclea dissimilis]
          Length = 257

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+V GRFYGNIQTVVNNWLLL+G                       
Sbjct: 61  SAGSLLHICMLELGHDVAGRFYGNIQTVVNNWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIAD QTY EIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADSQTYSEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|289779613|emb|CAX52854.1| RNA polymerase II large subunit [Agmina diriwi]
          Length = 257

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIK DYGPESRGFV NSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKXDYGPESRGFVXNSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  134 bits (336), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/63 (93%), Positives = 61/63 (96%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIK DYGPESRGFV NSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKXDYGPESRGFVXNSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755664|gb|ADO86666.1| RNA polymerase II [Agmina sp. 48 ME-2010]
          Length = 257

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLL G                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLXG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGS INI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSXINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755844|gb|ADO86756.1| RNA polymerase II [Agmina sp. 21 ME-2010]
          Length = 257

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+E  GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEXDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVI KAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIXKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|317417332|emb|CBI70696.1| RNA polymerase II [Limnocentropus himalayanus]
          Length = 257

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 249/303 (82%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VE G L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEXGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLL+G                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755722|gb|ADO86695.1| RNA polymerase II [Agmina sp. 10 ME-2010]
          Length = 257

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VE G L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEXGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLH C LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHXCMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755740|gb|ADO86704.1| RNA polymerase II [Agmina sp. 9 ME-2010]
          Length = 257

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LEL H+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELXHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGF KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFXKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGF KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFXKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755826|gb|ADO86747.1| RNA polymerase II [Agmina hastata]
          Length = 257

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPG VNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGXVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRG VENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGXVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRG VENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGXVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|317417312|emb|CBI70686.1| RNA polymerase II [Marilia sp. TM-2009]
          Length = 257

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/303 (77%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+E  GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEXDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGHE  G+FYGNIQTV+NNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHETAGKFYGNIQTVINNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTY EIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYQEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|289779573|emb|CAX52834.1| RNA polymerase II large subunit [Ecnomus sp. EJ9]
          Length = 257

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/303 (77%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+E  GPY+WISPGDTKV+VEHG L+MGILCK++LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEXDGPYKWISPGDTKVMVEHGELIMGILCKRTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTY EIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYTEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269991539|emb|CAX37890.1| RNA polymerase II [Hydropsyche alluaudina]
 gi|289779543|emb|CAX52816.1| RNA polymerase II large subunit [Hydropsyche alluaudina]
          Length = 257

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIK AKEDVIEVIQKA 
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKXAKEDVIEVIQKAX 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|262303447|gb|ACY44316.1| RNA polymerase largest subunit [Ischnura verticalis]
          Length = 655

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/298 (79%), Positives = 244/298 (81%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILM LPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVNM RTHSTHPDDED G
Sbjct: 17  KEQMMNILMHLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDDEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTVV
Sbjct: 77  PYCWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 137 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 190

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 191 ----------------------------------------NTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 211 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 268



 Score =  261 bits (668), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 144/227 (63%), Positives = 156/227 (68%), Gaps = 32/227 (14%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED LSKQAN+NATLLFQCLVRSTLCTK V+E++RLSSEAFEWL+GEIE RFQQAQ  
Sbjct: 455  VAGEDALSKQANQNATLLFQCLVRSTLCTKCVSEDFRLSSEAFEWLIGEIETRFQQAQ-- 512

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
             C     V  K +  G  +  L   I     P++             PS   F       
Sbjct: 513  -CQPXAGVSSKNVTLGVPR--LKEIINISKKPKA-------------PSLTVF------- 549

Query: 1073 GLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD 1126
             L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVNVYYEMPD
Sbjct: 550  -LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPD 608

Query: 1127 FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFN 1173
            FDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFGDDLNCIFN
Sbjct: 609  FDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINTGFGDDLNCIFN 655



 Score =  160 bits (404), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 74/79 (93%), Positives = 75/79 (94%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 573  LRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 632

Query: 1589 LTMEAISEKINAGFGDDLN 1607
            LTME I+EKIN GFGDDLN
Sbjct: 633  LTMEQIAEKINTGFGDDLN 651



 Score =  159 bits (403), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/159 (54%), Positives = 101/159 (63%), Gaps = 36/159 (22%)

Query: 604 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERQ 663
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDP+NER 
Sbjct: 307 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFERKFKFDPTNERN 366

Query: 664 LRRIFNEDVLRELM-GSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELE 722
           LRR+F EDVLRE+  GS D+I  LE+E      W+QL R                     
Sbjct: 367 LRRVFTEDVLREVSGGSSDIIGALERE------WEQLVR--------------------- 399

Query: 723 KEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                   DREALR+IF SG+S VVLPCNL   IF + +
Sbjct: 400 --------DREALRQIFPSGDSKVVLPCNLQRXIFHINK 430



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/83 (63%), Positives = 61/83 (73%), Gaps = 4/83 (4%)

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDP+NER 
Sbjct: 307 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFERKFKFDPTNER- 365

Query: 491 TLRNVSS---LRRVVNSKPLLIG 510
            LR V +   LR V      +IG
Sbjct: 366 NLRRVFTEDVLREVSGGSSDIIG 388



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 27/27 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            +QVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLP 268


>gi|269991531|emb|CAX37886.1| RNA polymerase II [Caledopsyche kimminsi]
 gi|289779537|emb|CAX52813.1| RNA polymerase II large subunit [Caledopsyche kimminsi]
          Length = 257

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQT LEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTXLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN LKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNXLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|126508320|gb|ABO15343.1| RNA polymerase II [Euodynerus megaera]
 gi|158632478|gb|ABW75635.1| RNA polymerase 2 [Dasypoda braccata]
          Length = 269

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/298 (78%), Positives = 246/298 (82%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 269



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 27/27 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            +QVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLP 269


>gi|283836882|emb|CAX52884.1| RNA polymerase II large subunit [Tinodes sp. EW3]
          Length = 257

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 247/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC L LGHE  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLXLGHETAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQT LEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTXLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNL AMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLXAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755592|gb|ADO86630.1| RNA polymerase II [Agmina mariae]
          Length = 257

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHST PD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTXPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
            M+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 XMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|283549553|emb|CAX62856.1| RNA polymerase 2 [Helicopha pouebo]
          Length = 257

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/303 (77%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLL+G                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIG GDTIADPQTY EIQ +IKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGXGDTIADPQTYFEIQSSIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755792|gb|ADO86730.1| RNA polymerase II [Agmina sp. 26 ME-2010]
          Length = 255

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/301 (78%), Positives = 247/301 (82%), Gaps = 46/301 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQ AH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQXAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 G 403
           G
Sbjct: 255 G 255



 Score =  134 bits (338), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/61 (96%), Positives = 61/61 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 G 1069
            G
Sbjct: 255  G 255


>gi|283476436|emb|CAY54372.1| RNA polymerase 2 [Ecnomus sp. GM4]
          Length = 257

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/303 (77%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCK++LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDXGPYKWISPGDTKVMVEHGELIMGILCKRTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTY EIQ AIKKAKEDVIEVIQKA 
Sbjct: 98  -----------------------HSIGIGDTIADPQTYTEIQKAIKKAKEDVIEVIQKAX 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755524|gb|ADO86596.1| RNA polymerase II [Agmina sp. 21 ME-2010]
          Length = 257

 Score =  481 bits (1239), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/303 (77%), Positives = 247/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG  +MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGEXIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HS GIGDTIADPQTYLEIQ AIKKAKEDVIEVI KAH
Sbjct: 98  -----------------------HSXGIGDTIADPQTYLEIQKAIKKAKEDVIEVIXKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|222089654|gb|ACM42386.1| RNA polymerase II [Hypotrigona ruspolii]
 gi|222089660|gb|ACM42389.1| RNA polymerase II [Lisotrigona furva]
 gi|222089668|gb|ACM42393.1| RNA polymerase II [Tetrigona binghami]
 gi|222089674|gb|ACM42396.1| RNA polymerase II [Tetragonula fuscobalteata]
          Length = 269

 Score =  481 bits (1239), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/298 (78%), Positives = 246/298 (82%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 269



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 27/27 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            +QVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLP 269


>gi|309755788|gb|ADO86728.1| RNA polymerase II [Agmina sp. 21 ME-2010]
          Length = 257

 Score =  481 bits (1239), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/303 (77%), Positives = 247/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+E  GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEXDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC  ELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMXELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRIL DARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILXDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755582|gb|ADO86625.1| RNA polymerase II [Agmina kara]
          Length = 257

 Score =  481 bits (1238), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/303 (77%), Positives = 247/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+ GT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTXGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQV RILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVXRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNV GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVXGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  136 bits (343), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNV GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVXGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755694|gb|ADO86681.1| RNA polymerase II [Agmina sp. 21 ME-2010]
          Length = 257

 Score =  481 bits (1238), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/303 (77%), Positives = 247/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+E  GPY+WISPGDTKV+V HG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEXDGPYKWISPGDTKVMVXHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVI KAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIXKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|194460490|gb|ACF71919.1| RNA polymerase II [Euglossa viridissima]
          Length = 256

 Score =  481 bits (1237), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/302 (78%), Positives = 247/302 (81%), Gaps = 46/302 (15%)

Query: 109 LIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLL 168
           LI+PGN     THSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLL
Sbjct: 1   LILPGNXXXXXTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLL 60

Query: 169 HICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDV 228
           HIC LELGHEVCGRFYGNIQTV+NNWLLLEG                             
Sbjct: 61  HICMLELGHEVCGRFYGNIQTVINNWLLLEG----------------------------- 91

Query: 229 IEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEP 288
                            HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEP
Sbjct: 92  -----------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEP 134

Query: 289 TPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIAC 348
           TPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIAC
Sbjct: 135 TPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIAC 194

Query: 349 VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGL 408
           VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGL
Sbjct: 195 VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGL 254

Query: 409 ID 410
           ID
Sbjct: 255 ID 256



 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 189  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 248

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 249  GGREGLID 256


>gi|126508336|gb|ABO15351.1| RNA polymerase II [Metapolybia cingulata]
          Length = 269

 Score =  481 bits (1237), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/298 (78%), Positives = 245/298 (82%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRT P
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTXP 269



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/27 (92%), Positives = 26/27 (96%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            +QVIACVGQQNVEGKRIPFGFRKRT P
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTXP 269


>gi|269991619|emb|CAX37930.1| RNA polymerase II [Asmicridea grisea]
 gi|269992365|emb|CAX51705.1| RNA polymerase II [Asmicridea edwardsii]
 gi|283836878|emb|CAX52858.1| RNA polymerase II large subunit [Asmicridea edwardsii]
          Length = 257

 Score =  481 bits (1237), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/303 (77%), Positives = 248/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+F+LIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFTLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVN WLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNTWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVI KAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVITKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           +M+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 HMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|269991615|emb|CAX37928.1| RNA polymerase II [Hydromanicus sp. EY8]
          Length = 257

 Score =  481 bits (1237), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/303 (77%), Positives = 247/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+V HG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVXHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRF GNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFXGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HS GIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSXGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|309755656|gb|ADO86662.1| RNA polymerase II [Agmina comata]
          Length = 257

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/303 (77%), Positives = 247/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM  THSTHPD+ED GPY+WISPGDTKV+VEHG L+MG LCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIXTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGXLCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTXGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV NSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVXNSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  136 bits (343), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV NSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVXNSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|289779559|emb|CAX52826.1| RNA polymerase II large subunit [Ecnomus sp. EI2]
          Length = 257

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/303 (77%), Positives = 247/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCK++LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKRTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GS LHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSXLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTY EIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYTEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS LAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSXLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS LAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSXLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|283549551|emb|CAX62855.1| RNA polymerase 2 [Beraeamyia squamosa]
          Length = 257

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/303 (77%), Positives = 247/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VE G L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDXGPYKWISPGDTKVMVEXGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTF NQVNRILNDARDKTGGSAKKSLTEYNNL AMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFXNQVNRILNDARDKTGGSAKKSLTEYNNLXAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|38232445|gb|AAR15058.1| RNA polymerase II largest subunit [Thulinius stephaniae]
          Length = 297

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/328 (70%), Positives = 256/328 (78%), Gaps = 46/328 (14%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++EQMM +LM+LP WDGK+P P ILKPK LWTGKQ+FSLIIPGNVN+ RTHSTHPD+ED 
Sbjct: 16  DKEQMMQLLMWLPSWDGKIPMPAILKPKALWTGKQIFSLIIPGNVNVIRTHSTHPDEEDD 75

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV++EHG LL GI+CKK+LGTS+GSL+HI FLELGHEVCG+F+ +IQTV
Sbjct: 76  GPYKWISPGDTKVLIEHGQLLCGIICKKTLGTSAGSLIHIVFLELGHEVCGKFFSHIQTV 135

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           +NNWLL EGHSIGIGDTIADPQTY  IQ  I KAK +V+EVI KAHN +LEPTPG     
Sbjct: 136 INNWLLYEGHSIGIGDTIADPQTYRVIQDTIAKAKREVVEVIAKAHNDELEPTPG----- 190

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
                                                    NTLRQTFENQVNRILNDAR
Sbjct: 191 -----------------------------------------NTLRQTFENQVNRILNDAR 209

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTG SA+KSL+ YNN KAMVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPH
Sbjct: 210 DKTGSSAQKSLSAYNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPH 269

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFF 398
           FI DDYGPESRGFVENSYLAGLTPSEFF
Sbjct: 270 FITDDYGPESRGFVENSYLAGLTPSEFF 297



 Score =  120 bits (300), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 54/67 (80%), Positives = 58/67 (86%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFI DDYGPESRGFVENSYLAG
Sbjct: 231  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFITDDYGPESRGFVENSYLAG 290

Query: 1058 LTPSEFF 1064
            LTPSEFF
Sbjct: 291  LTPSEFF 297


>gi|323387781|gb|ADX60041.1| RNA polymerase II [Eremaphanta iranica]
          Length = 268

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/297 (78%), Positives = 245/297 (82%), Gaps = 46/297 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTL 368
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTL
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTL 268



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 26/26 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTL 1034
            +QVIACVGQQNVEGKRIPFGFRKRTL
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTL 268


>gi|259016112|gb|ACV89336.1| RNA polymerase II 215kD subunit [Hydropsyche phalerata]
          Length = 263

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/302 (77%), Positives = 247/302 (81%), Gaps = 46/302 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MNILMFLP W GKMP+PCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 8   KEQIMNILMFLPTWGGKMPKPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 67

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGH+  GRFYGNIQTVV
Sbjct: 68  PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHDTAGRFYGNIQTVV 127

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 128 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 181

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 182 ----------------------------------------NTLRQTFENQVNRILNDARD 201

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 202 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 261

Query: 372 IK 373
           IK
Sbjct: 262 IK 263



 Score = 69.7 bits (169), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/31 (96%), Positives = 31/31 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 1039
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIK
Sbjct: 233  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 263


>gi|289779587|emb|CAX52841.1| RNA polymerase II large subunit [Ecnomus sp. EK7]
          Length = 257

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/303 (77%), Positives = 247/303 (81%), Gaps = 46/303 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCK++LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKRTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTY EIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYTEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGS INI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSXINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+F AM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFXAM 254

Query: 403 GGR 405
           GGR
Sbjct: 255 GGR 257



 Score =  135 bits (339), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+F AM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFXAM 254

Query: 1069 GGR 1071
            GGR
Sbjct: 255  GGR 257


>gi|283549603|emb|CAX62881.1| RNA polymerase 2 [Tamasia variegata]
          Length = 253

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/299 (78%), Positives = 246/299 (82%), Gaps = 46/299 (15%)

Query: 107 FSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGS 166
           FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GS
Sbjct: 1   FSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGS 60

Query: 167 LLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKE 226
           LLHIC LELGH+  GRFYGNIQTVVNNWLLL+G                           
Sbjct: 61  LLHICMLELGHDTAGRFYGNIQTVVNNWLLLDG--------------------------- 93

Query: 227 DVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 286
                              HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+L
Sbjct: 94  -------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAHNMEL 134

Query: 287 EPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVI 346
           EPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVI
Sbjct: 135 EPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVI 194

Query: 347 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 405
           ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGR
Sbjct: 195 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 253



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 191  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 250

Query: 1069 GGR 1071
            GGR
Sbjct: 251  GGR 253


>gi|262303449|gb|ACY44317.1| RNA polymerase largest subunit [Plathemis lydia]
          Length = 655

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/298 (78%), Positives = 243/298 (81%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LM LPIWDGKMPQP ILKPKPLWTGKQVFSLIIPGNVNM RTHSTHPDDED G
Sbjct: 17  KEQMMNLLMHLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDDEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTVV
Sbjct: 77  PYCWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVI KAHNM+LEPTPG      
Sbjct: 137 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVISKAHNMELEPTPG------ 190

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 191 ----------------------------------------NTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 211 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 268



 Score =  167 bits (424), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 84/106 (79%), Positives = 87/106 (82%), Gaps = 6/106 (5%)

Query: 1074 LIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDF 1127
            L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDF
Sbjct: 550  LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIGEDQEFVNVYYEMPDF 609

Query: 1128 DPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFN 1173
            DPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFGDDLNCIFN
Sbjct: 610  DPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINTGFGDDLNCIFN 655



 Score =  159 bits (401), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/79 (93%), Positives = 75/79 (94%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 573  LRKVTANTAIYYDPDPQNTVIGEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 632

Query: 1589 LTMEAISEKINAGFGDDLN 1607
            LTME I+EKIN GFGDDLN
Sbjct: 633  LTMEQIAEKINTGFGDDLN 651



 Score =  156 bits (394), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/150 (56%), Positives = 96/150 (64%), Gaps = 36/150 (24%)

Query: 604 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERQ 663
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDPSNER 
Sbjct: 307 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFERKFKFDPSNERN 366

Query: 664 LRRIFNEDVLRELM-GSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELE 722
           LRR+F EDVLRE+  GS D I  LE+E      W+QL R                     
Sbjct: 367 LRRVFTEDVLREITGGSSDAIGALERE------WEQLVR--------------------- 399

Query: 723 KEWEKLCEDREALREIFSSGESNVVLPCNL 752
                   DREALR+IF SG+S VVLPCNL
Sbjct: 400 --------DREALRQIFPSGDSKVVLPCNL 421



 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/71 (70%), Positives = 56/71 (78%), Gaps = 7/71 (9%)

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ LS+K FE K++FDPSNER 
Sbjct: 307 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFERKFKFDPSNER- 365

Query: 491 TLRNVSSLRRV 501
                 +LRRV
Sbjct: 366 ------NLRRV 370



 Score = 60.8 bits (146), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 27/27 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            +QVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLP 268


>gi|194460305|gb|ACF71827.1| RNA polymerase II [Euglossa iopyrrha]
          Length = 248

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/294 (79%), Positives = 243/294 (82%), Gaps = 46/294 (15%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGI
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGP 378
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGP
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGP 248



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/36 (97%), Positives = 36/36 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGP 1044
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGP
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGP 248


>gi|194460387|gb|ACF71868.1| RNA polymerase II [Euglossa orellana]
          Length = 257

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/301 (78%), Positives = 245/301 (81%), Gaps = 46/301 (15%)

Query: 94  ILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMG 153
           ILKP PLWTGKQ+FSLI PGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MG
Sbjct: 1   ILKPNPLWTGKQIFSLIXPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMG 60

Query: 154 ILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQT 213
           ILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGIGDTIADPQT
Sbjct: 61  ILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQT 120

Query: 214 YLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKED 273
           YLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                            
Sbjct: 121 YLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG---------------------------- 152

Query: 274 VIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVA 333
                             NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+
Sbjct: 153 ------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVS 194

Query: 334 GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 393
           GSKGSNINI QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF  NSYLAGLT
Sbjct: 195 GSKGSNINIXQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFXXNSYLAGLT 254

Query: 394 P 394
           P
Sbjct: 255 P 255



 Score =  110 bits (274), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/51 (96%), Positives = 49/51 (96%)

Query: 1010 QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 1060
            QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF  NSYLAGLTP
Sbjct: 205  QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFXXNSYLAGLTP 255


>gi|262303441|gb|ACY44313.1| RNA polymerase largest subunit [Ephemerella inconstans]
          Length = 654

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/298 (77%), Positives = 245/298 (82%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+L+FLPIWDGKMPQP ILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDE+SG
Sbjct: 17  KEQMMNLLLFLPIWDGKMPQPAILKPKPLWTGKQLFSLIIPGNVNMIRTHSTHPDDENSG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHE CGRFYGNIQTV+
Sbjct: 77  PYNWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEECGRFYGNIQTVI 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLL+GHSIGIGDTIADPQTY+EIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 137 NNWLLLDGHSIGIGDTIADPQTYIEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 190

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 191 ----------------------------------------NTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 211 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 268



 Score =  259 bits (663), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 144/227 (63%), Positives = 155/227 (68%), Gaps = 32/227 (14%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGEDQLSK+ANENATLLFQCLVRS LCTK VA+ YRLS+EAFEWLVGEIE RFQQAQ  
Sbjct: 454  VAGEDQLSKKANENATLLFQCLVRSILCTKNVADKYRLSAEAFEWLVGEIETRFQQAQ-- 511

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
             C     V  K +  G  +  L   I     P++             PS   F       
Sbjct: 512  -CQPXAGVSSKNVTLGVPR--LKEIINISKKPKA-------------PSLTVF------- 548

Query: 1073 GLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD 1126
             L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVN+YYEMPD
Sbjct: 549  -LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNIYYEMPD 607

Query: 1127 FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFN 1173
            FDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFGDDLNCIFN
Sbjct: 608  FDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINLGFGDDLNCIFN 654



 Score =  163 bits (413), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 110/281 (39%), Positives = 142/281 (50%), Gaps = 67/281 (23%)

Query: 604 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERQ 663
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ L++ +FE  YRFDPSNER 
Sbjct: 307 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLANDEFERGYRFDPSNERH 366

Query: 664 LRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEK 723
           LRR+F EDV++ELMGS DVISELE                                   +
Sbjct: 367 LRRVFTEDVVKELMGSADVISELE-----------------------------------R 391

Query: 724 EWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR---------WKLWGNENLRFLC 774
           EWE L +DR+ +R+ F SGE  VVLPCNL   IF + +           + G +NL   C
Sbjct: 392 EWEALKKDRDNMRQTFPSGEDKVVLPCNLERXIFHINKRLPTDLSPLLVINGVQNLLTKC 451

Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
            II     + S +   N  L F  L       ++LC    A  + ++             
Sbjct: 452 -IIVAGEDQLSKKANENATLLFQCLV-----RSILCTKNVADKYRLSAE----------- 494

Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGV-SENIIMGQLPRM 874
               +FE  V  +      A+  P  GV S+N+ +G +PR+
Sbjct: 495 ----AFEWLVGEIETRFQQAQCQPXAGVSSKNVTLG-VPRL 530



 Score =  158 bits (400), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/79 (92%), Positives = 75/79 (94%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVN+YYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 572  LRKVTANTAIYYDPDPQNTVIAEDQEFVNIYYEMPDFDPTRISPWLLRIELDRKRMTDKK 631

Query: 1589 LTMEAISEKINAGFGDDLN 1607
            LTME I+EKIN GFGDDLN
Sbjct: 632  LTMEQIAEKINLGFGDDLN 650



 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 54/71 (76%), Gaps = 7/71 (9%)

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD TVRNSVGQLIQLRYGEDGLCGE VE Q + T+ L++ +FE  YRFDPSNER 
Sbjct: 307 SVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLANDEFERGYRFDPSNER- 365

Query: 491 TLRNVSSLRRV 501
                  LRRV
Sbjct: 366 ------HLRRV 370



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 27/27 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            +QVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLP 268


>gi|157841466|gb|ABV83199.1| RNA polymerase 2 [Pellioditis typica]
          Length = 633

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 252/413 (61%), Positives = 302/413 (73%), Gaps = 17/413 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
            V+G+D++SKQA  NATLL   L+RSTLC+K +A  YRL+SEAFEW++GE+E RF+QA  Q
Sbjct: 228  VSGDDRISKQAQYNATLLMNILIRSTLCSKKMASTYRLNSEAFEWMLGEVETRFKQAIAQ 287

Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-----VENSYLAGLTPS-EFF 1064
                VG    +    P         HF        + G      + N      TPS   F
Sbjct: 288  PGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTCF 347

Query: 1065 FHAMGGREGLIDTAVKTAETVNVL--VFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
                  ++       KT E +  L    L +VTANTAIYYDPD +NT I ED+E+V+++Y
Sbjct: 348  LQGAAAKD-----HDKTKEVLCKLEHTTLRKVTANTAIYYDPDVKNTCIEEDEEWVSIFY 402

Query: 1123 EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1182
            EMPDFDP+R SPWLLR+ELDRKRMTDKKLTME I++KI+AGFGDDLN I+ DDNA+KLV 
Sbjct: 403  EMPDFDPSRASPWLLRLELDRKRMTDKKLTMEQIADKIHAGFGDDLNVIYTDDNADKLVF 462

Query: 1183 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1242
            R+RI N DD K  DEE  +DKMEDD+FLRCIE+NMLS++TLQGI +I KVYMH P TD K
Sbjct: 463  RLRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGITSISKVYMHKPMTDDK 520

Query: 1243 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1302
            KR+IIT  G FKAIADWLLETDGT+L+KVLSE+ +DP+RT SNDICEIF+VLGIEAVRKS
Sbjct: 521  KRVIITPEGGFKAIADWLLETDGTALLKVLSEQHIDPIRTTSNDICEIFEVLGIEAVRKS 580

Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1355
            +E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGIN Q+ GALM C
Sbjct: 581  IEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINXQEVGALMXC 633



 Score =  220 bits (561), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 103/133 (77%), Positives = 118/133 (88%)

Query: 357 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 416
           KRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTA
Sbjct: 1   KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTA 60

Query: 417 ETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKK 476
           ETGYIQRRLIKAMESVMV+YD TVRNS+ Q+IQLRYGEDGL G  VE+Q + T+  ++  
Sbjct: 61  ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQNLPTMKPTNAL 120

Query: 477 FEDKYRFDPSNER 489
           FE +++ D S+E+
Sbjct: 121 FEKEFKLDLSDEK 133



 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 108/152 (71%), Gaps = 30/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPD +NT I ED+E+V+++YEMPDFDP+R SPWLLR+ELDRKRMTDKK
Sbjct: 371  LRKVTANTAIYYDPDVKNTCIEEDEEWVSIFYEMPDFDPSRASPWLLRLELDRKRMTDKK 430

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L                            TME I++KI+AGFGDDLN I+ DDNA+KLV 
Sbjct: 431  L----------------------------TMEQIADKIHAGFGDDLNVIYTDDNADKLVF 462

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N DD K  DEE  +DKMEDD+FLRCIE
Sbjct: 463  RLRITNQDD-KGTDEEQ-IDKMEDDVFLRCIE 492



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 102/170 (60%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q+IQLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 63  GYIQRRLIKAMESVMVNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQNLPTMKPTNALFE 122

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++ D S+E+ L + + EDV+REL GS + + E+E                        
Sbjct: 123 KEFKLDLSDEKTLTKYYTEDVVRELQGSSESLKEVE------------------------ 158

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      KEW +L EDR  LR+IF +G + +VLPCNL  +I+  Q+
Sbjct: 159 -----------KEWAQLEEDRRLLRKIFPTGNAKIVLPCNLQRLIWNAQK 197



 Score =  137 bits (345), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 72/88 (81%)

Query: 1023 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 1082
            KRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTA
Sbjct: 1    KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTA 60

Query: 1083 ETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            ET  +   L +   +  + YD   +N++
Sbjct: 61   ETGYIQRRLIKAMESVMVNYDGTVRNSL 88



 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 57/69 (82%), Gaps = 3/69 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRKS+E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGIN 
Sbjct: 565 ICEIFEVLGIEAVRKSIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINX 624

Query: 830 QDTGALMRC 838
           Q+ GALM C
Sbjct: 625 QEVGALMXC 633



 Score = 97.4 bits (241), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 47/54 (87%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 569
           S+E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGIN Q+ GALM C
Sbjct: 580 SIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINXQEVGALMXC 633


>gi|222089664|gb|ACM42391.1| RNA polymerase II [Odontotrigona haematoptera]
 gi|222089666|gb|ACM42392.1| RNA polymerase II [Plebeia sp. A CR-2009]
          Length = 268

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/297 (78%), Positives = 245/297 (82%), Gaps = 46/297 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTL 368
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTL
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTL 268



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 26/26 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTL 1034
            +QVIACVGQQNVEGKRIPFGFRKRTL
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTL 268


>gi|222089652|gb|ACM42385.1| RNA polymerase II [Dactylurina staudingeri]
          Length = 269

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/298 (78%), Positives = 245/298 (82%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRIL DARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILXDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 269



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 27/27 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            +QVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRTLP 269


>gi|194460319|gb|ACF71834.1| RNA polymerase II [Exaerete dentata]
          Length = 258

 Score =  478 bits (1230), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/304 (76%), Positives = 244/304 (80%), Gaps = 46/304 (15%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGI
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR  PHFIKD YGP     V
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRXXPHFIKDXYGPXXXXXV 254

Query: 385 ENSY 388
           E SY
Sbjct: 255 EXSY 258



 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 37/46 (80%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY 1054
            +QVIACVGQQNVEGKRIPFGFRKR  PHFIKD YGP     VE SY
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRXXPHFIKDXYGPXXXXXVEXSY 258


>gi|259016098|gb|ACV89329.1| RNA polymerase II 215kD subunit [Microchorista philpotti]
          Length = 250

 Score =  478 bits (1230), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/296 (79%), Positives = 245/296 (82%), Gaps = 46/296 (15%)

Query: 106 VFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSG 165
           +FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+G
Sbjct: 1   IFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAG 60

Query: 166 SLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAK 225
           SLLHICFLELGHEV GRFYGNIQTVVNNWLLLEG                          
Sbjct: 61  SLLHICFLELGHEVAGRFYGNIQTVVNNWLLLEG-------------------------- 94

Query: 226 EDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMD 285
                               HSIGIGDTIADPQTY+EIQ AIKKAKEDVIEVIQKAHNM+
Sbjct: 95  --------------------HSIGIGDTIADPQTYMEIQRAIKKAKEDVIEVIQKAHNME 134

Query: 286 LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQV 345
           LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQV
Sbjct: 135 LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQV 194

Query: 346 IACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 401
           IACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHA
Sbjct: 195 IACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 250



 Score =  129 bits (325), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/59 (96%), Positives = 59/59 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHA
Sbjct: 192  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 250


>gi|62911675|gb|AAY21468.1| RNA polymerase II [Stenotritus sp. BND-2004]
          Length = 249

 Score =  478 bits (1230), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/295 (79%), Positives = 244/295 (82%), Gaps = 46/295 (15%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGIGDTIADPQ
Sbjct: 61  GILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQ 120

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
           TYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                           
Sbjct: 121 TYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG--------------------------- 153

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
                              NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 154 -------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS 387
           +GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS
Sbjct: 195 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS 249



 Score =  100 bits (248), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/45 (97%), Positives = 45/45 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS 1053
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS 249


>gi|222089672|gb|ACM42395.1| RNA polymerase II [Trigona amazonensis]
          Length = 267

 Score =  478 bits (1229), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/296 (78%), Positives = 244/296 (82%), Gaps = 46/296 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRT 367
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRT
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRT 267



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/25 (96%), Positives = 25/25 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRT 1033
            +QVIACVGQQNVEGKRIPFGFRKRT
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRT 267


>gi|283549605|emb|CAX62882.1| RNA polymerase 2 [Caloca saneva]
          Length = 257

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/302 (77%), Positives = 246/302 (81%), Gaps = 46/302 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELG E  GRFYGNIQTVVNNWLLL+G                       
Sbjct: 61  SAGSLLHICMLELGXETAGRFYGNIQTVVNNWLLLDG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPG TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGXTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+ HAM
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYXHAM 254

Query: 403 GG 404
           GG
Sbjct: 255 GG 256



 Score =  133 bits (335), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/62 (95%), Positives = 61/62 (98%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+ HAM
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYXHAM 254

Query: 1069 GG 1070
            GG
Sbjct: 255  GG 256


>gi|158427041|gb|ABW38128.1| RNA polymerase II [Anthophora plumipes]
          Length = 255

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/296 (78%), Positives = 244/296 (82%), Gaps = 46/296 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 6   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 65

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 66  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 125

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 126 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 179

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 180 ----------------------------------------NTLRQTFENQVNRILNDARD 199

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRT 367
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRT
Sbjct: 200 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRT 255



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/25 (96%), Positives = 25/25 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRT 1033
            +QVIACVGQQNVEGKRIPFGFRKRT
Sbjct: 231  SQVIACVGQQNVEGKRIPFGFRKRT 255


>gi|157841468|gb|ABV83200.1| RNA polymerase 2 [Rhabditis brassicae]
          Length = 628

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 254/411 (61%), Positives = 297/411 (72%), Gaps = 17/411 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
            V+GED++SKQA  NATLL   LVRSTLC+K +A  Y+L+SEAFEWL+GE+E RF+QA  Q
Sbjct: 225  VSGEDRISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQ 284

Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-----VENSYLAGLTPSEFFF 1065
                VG    +    P         HF        + G      + N      TPS   F
Sbjct: 285  PGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVF 344

Query: 1066 ---HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
                A    E   D   K   T      L +VT+NTAIYYDPD +NT I ED E+V+++Y
Sbjct: 345  LQGAAAKDAERAKDVLCKLEHTT-----LRKVTSNTAIYYDPDVRNTCIEEDSEWVSIFY 399

Query: 1123 EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1182
            EMPDFDP+R SPWLLR+ELDRKRMTDKKLTME I++ I+ GFGDDLN I+ DDNA+KLV 
Sbjct: 400  EMPDFDPSRASPWLLRLELDRKRMTDKKLTMEQIADXIHQGFGDDLNVIYTDDNADKLVF 459

Query: 1183 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1242
            R+RI N DD K  DEE  +DKMEDD+FLRCIE+NMLSD+TLQGI +I KVYMH PQTD K
Sbjct: 460  RLRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGITSICKVYMHKPQTDDK 517

Query: 1243 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1302
            KR IIT  G FK+IADWLLETDGT+L+KVLSE+ +DPVRT SNDICEIF+VLGIEAVRKS
Sbjct: 518  KRTIITPEGGFKSIADWLLETDGTALLKVLSEQHIDPVRTTSNDICEIFEVLGIEAVRKS 577

Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1353
            +E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALM
Sbjct: 578  IEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALM 628



 Score =  216 bits (551), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 103/134 (76%), Positives = 117/134 (87%), Gaps = 1/134 (0%)

Query: 360 PFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETG 419
           PFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREG+IDTAVKTAETG
Sbjct: 1   PFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGIIDTAVKTAETG 60

Query: 420 YIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED 479
           YIQRRLIKAMESVMV+YD TVRNS+ Q+IQLRYGEDGL G  VE+Q + T+  +H  FE 
Sbjct: 61  YIQRRLIKAMESVMVNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQTLPTMKPTHALFEK 120

Query: 480 KYRFDPSNERPTLR 493
            ++ D S+E+ TLR
Sbjct: 121 DFKLDLSDEK-TLR 133



 Score =  172 bits (436), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/152 (58%), Positives = 105/152 (69%), Gaps = 30/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT+NTAIYYDPD +NT I ED E+V+++YEMPDFDP+R SPWLLR+ELDRKRMTDKK
Sbjct: 368  LRKVTSNTAIYYDPDVRNTCIEEDSEWVSIFYEMPDFDPSRASPWLLRLELDRKRMTDKK 427

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L                            TME I++ I+ GFGDDLN I+ DDNA+KLV 
Sbjct: 428  L----------------------------TMEQIADXIHQGFGDDLNVIYTDDNADKLVF 459

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N DD K  DEE  +DKMEDD+FLRCIE
Sbjct: 460  RLRITNQDD-KGADEEQ-IDKMEDDVFLRCIE 489



 Score =  143 bits (360), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 102/170 (60%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q+IQLRYGEDGL G  VE+Q + T+  +H  FE
Sbjct: 60  GYIQRRLIKAMESVMVNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQTLPTMKPTHALFE 119

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             ++ D S+E+ LR+ + EDV+REL GS + I E                          
Sbjct: 120 KDFKLDLSDEKTLRKYYTEDVIRELQGSSEAIKE-------------------------- 153

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                    +E+EW +L EDR  LR+IF +G + +VLPCNL  +++  Q+
Sbjct: 154 ---------VEQEWGQLEEDRRLLRKIFPNGNAKIVLPCNLQRLLWNAQK 194



 Score =  130 bits (328), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 59/85 (69%), Positives = 69/85 (81%)

Query: 1026 PFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV 1085
            PFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREG+IDTAVKTAET 
Sbjct: 1    PFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGIIDTAVKTAETG 60

Query: 1086 NVLVFLFQVTANTAIYYDPDPQNTV 1110
             +   L +   +  + YD   +N++
Sbjct: 61   YIQRRLIKAMESVMVNYDGTVRNSL 85



 Score =  105 bits (263), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/67 (74%), Positives = 57/67 (85%), Gaps = 3/67 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRKS+E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 562 ICEIFEVLGIEAVRKSIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 621

Query: 830 QDTGALM 836
           Q+ GALM
Sbjct: 622 QEVGALM 628



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/52 (82%), Positives = 47/52 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 567
           S+E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALM
Sbjct: 577 SIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALM 628


>gi|38232417|gb|AAR15044.1| RNA polymerase II largest subunit [Macrobiotus islandicus]
          Length = 297

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/327 (69%), Positives = 260/327 (79%), Gaps = 46/327 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++Q+M +LM+ P WDGK+P P ILKP+PLWTGKQ+FSLIIPGNVN+ RTHSTHPDDED G
Sbjct: 17  KDQIMQLLMWHPGWDGKIPTPAILKPRPLWTGKQLFSLIIPGNVNVIRTHSTHPDDEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++E+G L+ GI+CKK+LGTS+GSL+HI FLELGHE+CG+F+ NIQTV+
Sbjct: 77  PYKWISPGDTKVLIENGQLISGIVCKKTLGTSAGSLIHIVFLELGHEICGKFFANIQTVI 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL+EGHSIGIGDTIADP TY +IQ  IKKAK++V+EVI+KAHN +LEPTPG      
Sbjct: 137 NNWLLIEGHSIGIGDTIADPSTYRDIQETIKKAKQEVVEVIEKAHNDELEPTPG------ 190

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILN+ARD
Sbjct: 191 ----------------------------------------NTLRQTFENQVNRILNEARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA+KSL+++NN KAMVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHF
Sbjct: 211 KTGSSAQKSLSDHNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHF 270

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFF 398
           I DDYGPESRGFVENSYLAGLTPSEFF
Sbjct: 271 ITDDYGPESRGFVENSYLAGLTPSEFF 297



 Score =  120 bits (300), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 54/67 (80%), Positives = 58/67 (86%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFI DDYGPESRGFVENSYLAG
Sbjct: 231  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFITDDYGPESRGFVENSYLAG 290

Query: 1058 LTPSEFF 1064
            LTPSEFF
Sbjct: 291  LTPSEFF 297


>gi|309755660|gb|ADO86664.1| RNA polymerase II [Ecnomus sp. ME-2010]
          Length = 253

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/299 (77%), Positives = 245/299 (81%), Gaps = 46/299 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQVFSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCK++LGT
Sbjct: 1   GKQVFSLIIPGNVNMIRTHSTHPDEEDXGPYKWISPGDTKVMVEHGELIMGILCKRTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH++ GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDIAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HS GIGDTIADPQTY EIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSXGIGDTIADPQTYTEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 401
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHA
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 253



 Score =  130 bits (326), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 57/59 (96%), Positives = 59/59 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHA
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 253


>gi|158427037|gb|ABW38126.1| RNA polymerase II [Epiclopus gayi]
          Length = 255

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/296 (78%), Positives = 244/296 (82%), Gaps = 46/296 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 6   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 65

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 66  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 125

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEP+PG      
Sbjct: 126 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPSPG------ 179

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 180 ----------------------------------------NTLRQTFENQVNRILNDARD 199

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRT 367
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRT
Sbjct: 200 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRT 255



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/25 (96%), Positives = 25/25 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRT 1033
            +QVIACVGQQNVEGKRIPFGFRKRT
Sbjct: 231  SQVIACVGQQNVEGKRIPFGFRKRT 255


>gi|259016128|gb|ACV89344.1| RNA polymerase II 215kD subunit [Bittacidae sp. BMW-2009]
          Length = 249

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/295 (79%), Positives = 244/295 (82%), Gaps = 46/295 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHICFLELGHEV GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICFLELGHEVAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTY+EIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYMEIQRAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 397
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 249



 Score =  121 bits (303), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/55 (98%), Positives = 55/55 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 1063
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 249


>gi|126508326|gb|ABO15346.1| RNA polymerase II [Liostenogaster flavolineata]
          Length = 257

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/295 (78%), Positives = 243/295 (82%), Gaps = 46/295 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 9   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 68

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 69  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 128

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 129 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 182

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 183 ----------------------------------------NTLRQTFENQVNRILNDARD 202

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 203 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 257



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 234  SQVIACVGQQNVEGKRIPFGFRKR 257


>gi|1916659|gb|AAB51210.1| large subunit RNA polymerase II, partial [Cruznema tripartitum]
          Length = 633

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 245/412 (59%), Positives = 295/412 (71%), Gaps = 16/412 (3%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQ--AQ 1010
            V GED++SKQA  NATLL   L+RSTLC+K +A +Y+L+ EAF+WL+GE+E RFQQ  AQ
Sbjct: 228  VGGEDRISKQAQYNATLLMNILLRSTLCSKQMASHYKLNQEAFDWLLGEVETRFQQPIAQ 287

Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYG------PESRGFVENSYLAGLTPSEFF 1064
                VG    +    P         H+            P  +  +  S +        F
Sbjct: 288  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKMLKTPSLTVF 347

Query: 1065 FHAMGGREG--LIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
               +  R+     D   K   T      L +VTANTAIYYDPDP+NT I ED+E+V+++Y
Sbjct: 348  LRGVAARDADKAKDVLCKLEHTT-----LRKVTANTAIYYDPDPKNTCIEEDEEWVSIFY 402

Query: 1123 EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1182
            EMPDFDP+R SPWLLR+ELDRKRMTDKKLTME I+++I+ GFGDDLN I+ DDNA+KLV 
Sbjct: 403  EMPDFDPSRSSPWLLRLELDRKRMTDKKLTMEQIADRIHQGFGDDLNVIYTDDNADKLVF 462

Query: 1183 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1242
            R+RI N D  K  DEE  VDKMEDDMFLRCIE+NMLSD+TLQGI +I KVYMH P TD K
Sbjct: 463  RLRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGITSISKVYMHKPTTDDK 521

Query: 1243 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1302
            KR+IIT  G FKAI +W+LETDGT+L+KVLSE+ VD VRT SNDICEIF++LGIEAVRKS
Sbjct: 522  KRVIITPEGGFKAIPEWILETDGTALLKVLSEQHVDSVRTTSNDICEIFEILGIEAVRKS 581

Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1354
            +E+EMN V+ F G YVNYRHLALLCDVMTAKGHL+AITRHGINRQ+ G LMR
Sbjct: 582  IEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLLAITRHGINRQEVGCLMR 633



 Score =  222 bits (565), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/137 (76%), Positives = 122/137 (89%), Gaps = 1/137 (0%)

Query: 357 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 416
           KRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTA
Sbjct: 1   KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTA 60

Query: 417 ETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKK 476
           ETGYIQRRLIKAMESVMV+YD TVRNS+GQ++QLRYGEDGL G  VE+Q + T+  ++  
Sbjct: 61  ETGYIQRRLIKAMESVMVNYDGTVRNSIGQMVQLRYGEDGLDGMWVENQNLPTMKPTNAV 120

Query: 477 FEDKYRFDPSNERPTLR 493
           FE +++ D ++E+ TLR
Sbjct: 121 FEKEFKLDLADEK-TLR 136



 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 107/152 (70%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+NT I ED+E+V+++YEMPDFDP+R SPWLLR+ELDRKRMTDKK
Sbjct: 371  LRKVTANTAIYYDPDPKNTCIEEDEEWVSIFYEMPDFDPSRSSPWLLRLELDRKRMTDKK 430

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+ GFG                            DDLN I+ DDNA+KLV 
Sbjct: 431  LTMEQIADRIHQGFG----------------------------DDLNVIYTDDNADKLVF 462

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N D  K  DEE  VDKMEDDMFLRCIE
Sbjct: 463  RLRITNQDGDKGGDEEQ-VDKMEDDMFLRCIE 493



 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 104/170 (61%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+GQ++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 63  GYIQRRLIKAMESVMVNYDGTVRNSIGQMVQLRYGEDGLDGMWVENQNLPTMKPTNAVFE 122

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++ D ++E+ LRR + EDV+R+L GS + + E+E                        
Sbjct: 123 KEFKLDLADEKTLRRFYTEDVVRDLQGSSEALREVE------------------------ 158

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF +G++ +VLPCNL  +++  Q+
Sbjct: 159 -----------SEWAQLEEDRRLLRKIFPTGDAKIVLPCNLKRLLWNAQK 197



 Score =  138 bits (347), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 72/88 (81%)

Query: 1023 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 1082
            KRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTA
Sbjct: 1    KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTA 60

Query: 1083 ETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            ET  +   L +   +  + YD   +N++
Sbjct: 61   ETGYIQRRLIKAMESVMVNYDGTVRNSI 88



 Score =  103 bits (258), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 57/68 (83%), Gaps = 3/68 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  +L   +VRKS+E+EMN V+ F G YVNYRHLALLCDVMTAKGHL+AITRHGINR
Sbjct: 566 ICEIFEILGIEAVRKSIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLLAITRHGINR 625

Query: 830 QDTGALMR 837
           Q+ G LMR
Sbjct: 626 QEVGCLMR 633



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/53 (79%), Positives = 47/53 (88%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 568
           S+E+EMN V+ F G YVNYRHLALLCDVMTAKGHL+AITRHGINRQ+ G LMR
Sbjct: 581 SIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLLAITRHGINRQEVGCLMR 633


>gi|170652066|gb|ACB21810.1| RNA polymerase II [Apis andreniformis]
          Length = 254

 Score =  475 bits (1223), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/295 (78%), Positives = 243/295 (82%), Gaps = 46/295 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 6   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 65

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 66  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 125

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 126 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 179

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 180 ----------------------------------------NTLRQTFENQVNRILNDARD 199

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 200 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 254



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 231  SQVIACVGQQNVEGKRIPFGFRKR 254


>gi|170651998|gb|ACB21776.1| RNA polymerase II [Exaerete azteca]
 gi|170652000|gb|ACB21777.1| RNA polymerase II [Euglossa mixta]
          Length = 252

 Score =  475 bits (1223), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/295 (78%), Positives = 243/295 (82%), Gaps = 46/295 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 4   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 63

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 64  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 123

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 124 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 177

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 178 ----------------------------------------NTLRQTFENQVNRILNDARD 197

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 198 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 252



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 229  SQVIACVGQQNVEGKRIPFGFRKR 252


>gi|126508298|gb|ABO15332.1| RNA polymerase II [Belonogaster nr. juncea V03]
          Length = 267

 Score =  474 bits (1221), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/296 (78%), Positives = 243/296 (82%), Gaps = 46/296 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPK LWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKLLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRT 367
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRT
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRT 267



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/25 (96%), Positives = 25/25 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRT 1033
            +QVIACVGQQNVEGKRIPFGFRKRT
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKRT 267


>gi|83320420|gb|ABC02837.1| RNA polymerase II largest subunit, partial [Rozella allomycis]
          Length = 809

 Score =  474 bits (1221), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/414 (57%), Positives = 288/414 (69%), Gaps = 50/414 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           N+  +MNI+M+LP W+GK+P+PCILKP PLW+GKQ+FS+IIP  VN    HSTHPD+E  
Sbjct: 273 NKAMVMNIVMWLPSWEGKLPRPCILKPVPLWSGKQIFSMIIPKGVNCVTFHSTHPDNE-- 330

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
             Y  ISPGDTKV++E G L+ GI+CKK++G ++G L+H+ + E G EV  +F+  +QTV
Sbjct: 331 --YSDISPGDTKVLIEDGELISGIVCKKTVGPAAGGLIHVIYNEHGSEVAKQFFNGVQTV 388

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNNWLL+ G                                               SIGI
Sbjct: 389 VNNWLLINGF----------------------------------------------SIGI 402

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIAD QT   I   I  AKE+V   IQ+A    L   PG TLR+TFE++VN+ LN AR
Sbjct: 403 GDTIADRQTMKNINETIAIAKEEVKATIQQAQKGLLSCEPGMTLRETFESKVNKSLNKAR 462

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           D  G SA+ SL E NN+K MVVAGSKGS INISQ+ ACVGQQNVEGKRIPFGFR RTLPH
Sbjct: 463 DSAGKSAQTSLKEQNNVKQMVVAGSKGSYINISQMTACVGQQNVEGKRIPFGFRYRTLPH 522

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F K DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQR+L+KA+E
Sbjct: 523 FTKGDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRKLVKALE 582

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            VM+ YD TVRN++G++IQ +YGEDG+    +E Q +D++ L++KKFE KY+ D
Sbjct: 583 DVMIKYDGTVRNALGEIIQFKYGEDGMDAVKIEKQSLDSMRLNNKKFEIKYKVD 636



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/191 (47%), Positives = 113/191 (59%), Gaps = 8/191 (4%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGFR RTLPHF K DYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 495  SQMTACVGQQNVEGKRIPFGFRYRTLPHFTKGDYGPESRGFVENSYLRGLTPQEFFFHAM 554

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   +  I YD   +N +     E +   Y     D
Sbjct: 555  GGREGLIDTAVKTAETGYIQRKLVKALEDVMIKYDGTVRNAL----GEIIQFKYGEDGMD 610

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN 1188
              +I     +  LD  R+ +KK  ++   + +N  +G   N +  +   E L   + ++ 
Sbjct: 611  AVKIE----KQSLDSMRLNNKKFEIKYKVDFLNPMYGISENVLQKEIIEEILATPVMLIA 666

Query: 1189 SDDSKMQDEED 1199
             D    Q  ED
Sbjct: 667  LDKEYRQLTED 677



 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 98/169 (57%), Gaps = 33/169 (19%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQR+L+KA+E VM+ YD TVRN++G++IQ +YGEDG+    +E Q +D++ L++KKFE
Sbjct: 571 GYIQRKLVKALEDVMIKYDGTVRNALGEIIQFKYGEDGMDAVKIEKQSLDSMRLNNKKFE 630

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KY+ D               L  + G    ISE                +  ++++ E+
Sbjct: 631 IKYKVD--------------FLNPMYG----ISE---------------NVLQKEIIEEI 657

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQ 760
           + +  ++  L+KE+ +L EDR  LREIF SG+S+  LP N+  +I+  Q
Sbjct: 658 LATPVMLIALDKEYRQLTEDRNVLREIFKSGDSSWPLPLNIKRMIWNAQ 706



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 40/56 (71%), Gaps = 1/56 (1%)

Query: 956  EDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            +D LS+Q + NAT+LFQ L+RS L  K V E + L  ++FEWL+GEIE++F  + V
Sbjct: 741  KDSLSEQ-DRNATMLFQILIRSILSVKRVLEEFHLDIKSFEWLMGEIESKFYNSFV 795



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)

Query: 1492 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            + + P QI++PQ+N+P MGIVQDTL  VRK T+R+ FL+K      + + P
Sbjct: 235  LALVPTQIVSPQSNKPCMGIVQDTLCGVRKFTRRESFLNKAMVMNIVMWLP 285


>gi|170651990|gb|ACB21772.1| RNA polymerase II [Euglossa decorata]
          Length = 252

 Score =  474 bits (1221), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/295 (78%), Positives = 243/295 (82%), Gaps = 46/295 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 4   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 63

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 64  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 123

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 124 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 177

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 178 ----------------------------------------NTLRQTFENQVNRILNDARD 197

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 198 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 252



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 229  SQVIACVGQQNVEGKRIPFGFRKR 252


>gi|157841494|gb|ABV83213.1| RNA polymerase 2 [Rhabditoides inermiformis]
          Length = 597

 Score =  474 bits (1221), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/426 (57%), Positives = 300/426 (70%), Gaps = 46/426 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V GED++SKQA  NATLL   LVRSTLC+K +A+ YRL+++AFEWL+GE+E RFQQA   
Sbjct: 190  VGGEDRISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEWLLGEVETRFQQAIAQ 249

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 250  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINVSKSPK----- 302

Query: 1051 ENSYLAGLTPS-EFFFHAMGGR--EGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQ 1107
                    TPS   F      R  E   D   K   T      L +VTANTAIYYDPDP+
Sbjct: 303  --------TPSLTVFLQGAAARDAEKAKDVLCKLEHTT-----LRKVTANTAIYYDPDPK 349

Query: 1108 NTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
            NT I ED+E+V+++YEMPDFDP++ SPW LR+ELDRKRMTDKKLTME I+++I+ GFGDD
Sbjct: 350  NTCIEEDEEWVSIFYEMPDFDPSQASPWCLRLELDRKRMTDKKLTMEHIADRIHQGFGDD 409

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIE 1227
            LN I+ DD A+KLV R+RI N  + K   EE+ VDKMEDD+FLRCIE+NMLSD+TLQGIE
Sbjct: 410  LNVIYTDDXADKLVFRLRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGIE 468

Query: 1228 AIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDI 1287
            AI KVYMH P TD KKR++IT  G +KAI +WLLETDGT+L+KVL+E+ VDPVRT SNDI
Sbjct: 469  AIAKVYMHKPTTDDKKRMVITPEGGYKAIPEWLLETDGTALLKVLAEKHVDPVRTSSNDI 528

Query: 1288 CEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 1347
            CEIF+VLGIEAVRK++E+EMN V+ F G YVNYRHLALLCDVMT KGHLMAITRHGINRQ
Sbjct: 529  CEIFEVLGIEAVRKAIEREMNHVISFDGSYVNYRHLALLCDVMTCKGHLMAITRHGINRQ 588

Query: 1348 DTGALM 1353
            + GALM
Sbjct: 589  EVGALM 594



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/152 (56%), Positives = 105/152 (69%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+NT I ED+E+V+++YEMPDFDP++ SPW LR+ELDRKRMTDKK
Sbjct: 333  LRKVTANTAIYYDPDPKNTCIEEDEEWVSIFYEMPDFDPSQASPWCLRLELDRKRMTDKK 392

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+ GFGDDLN                             I+ DD A+KLV 
Sbjct: 393  LTMEHIADRIHQGFGDDLNV----------------------------IYTDDXADKLVF 424

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N  + K   EE+ VDKMEDD+FLRCIE
Sbjct: 425  RLRITNQAEDK-GGEEEQVDKMEDDVFLRCIE 455



 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/95 (68%), Positives = 80/95 (84%)

Query: 395 SEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGE 454
           SEFFFHAMGGRE LIDTAVKTAETGYIQRR IKAMESVMV+YD TVRNS+ Q+IQLRYGE
Sbjct: 1   SEFFFHAMGGREVLIDTAVKTAETGYIQRRFIKAMESVMVNYDGTVRNSLAQMIQLRYGE 60

Query: 455 DGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           DGL G  VE Q++ T+ L++  FE +++ + ++E+
Sbjct: 61  DGLDGMWVESQQMATMKLTNSAFEKQFKTNLADEK 95



 Score =  132 bits (333), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/186 (40%), Positives = 106/186 (56%), Gaps = 38/186 (20%)

Query: 576 DVLMDAAAHAEADPMRGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAV 635
           +VL+D A         GYIQRR IKAMESVMV+YD TVRNS+ Q+IQLRYGEDGL G  V
Sbjct: 12  EVLIDTAVKTAET---GYIQRRFIKAMESVMVNYDGTVRNSLAQMIQLRYGEDGLDGMWV 68

Query: 636 EHQRIDTVALSHKKFEDKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFS 695
           E Q++ T+ L++  FE +++ + ++E+ L +++  DV+R+L  S + + E          
Sbjct: 69  ESQQMATMKLTNSAFEKQFKTNLADEKALNKVYTADVVRDLQESPEALKE---------- 118

Query: 696 WKQLRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEV 755
                                    +E EW +L EDR  LR+IF  G+S VVLPCNL  +
Sbjct: 119 -------------------------VEAEWLQLEEDRRLLRKIFPKGDSKVVLPCNLQRL 153

Query: 756 IFILQR 761
           I+  Q+
Sbjct: 154 IWNAQK 159



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 56/67 (83%), Gaps = 3/67 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK++E+EMN V+ F G YVNYRHLALLCDVMT KGHLMAITRHGINR
Sbjct: 528 ICEIFEVLGIEAVRKAIEREMNHVISFDGSYVNYRHLALLCDVMTCKGHLMAITRHGINR 587

Query: 830 QDTGALM 836
           Q+ GALM
Sbjct: 588 QEVGALM 594



 Score = 93.6 bits (231), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/52 (78%), Positives = 46/52 (88%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 567
           ++E+EMN V+ F G YVNYRHLALLCDVMT KGHLMAITRHGINRQ+ GALM
Sbjct: 543 AIEREMNHVISFDGSYVNYRHLALLCDVMTCKGHLMAITRHGINRQEVGALM 594



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 15/117 (12%)

Query: 1061 SEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNV 1120
            SEFFFHAMGGRE LIDTAVKTAET  +     +   +  + YD   +N++     + + +
Sbjct: 1    SEFFFHAMGGREVLIDTAVKTAETGYIQRRFIKAMESVMVNYDGTVRNSL----AQMIQL 56

Query: 1121 YYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD--LNCIFNDD 1175
             Y     D      W     ++ ++M   KLT  A  ++      D+  LN ++  D
Sbjct: 57   RYGEDGLD----GMW-----VESQQMATMKLTNSAFEKQFKTNLADEKALNKVYTAD 104


>gi|170651992|gb|ACB21773.1| RNA polymerase II [Aglae caerulea]
          Length = 250

 Score =  474 bits (1221), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/294 (78%), Positives = 242/294 (82%), Gaps = 46/294 (15%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GP
Sbjct: 3   EQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGP 62

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
           Y+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+N
Sbjct: 63  YKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVIN 122

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
           NWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG       
Sbjct: 123 NWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------- 175

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
                                                  NTLRQTFENQVNRILNDARDK
Sbjct: 176 ---------------------------------------NTLRQTFENQVNRILNDARDK 196

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           TGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 197 TGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 250



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 227  SQVIACVGQQNVEGKRIPFGFRKR 250


>gi|170652022|gb|ACB21788.1| RNA polymerase II [Frieseomelitta silvestrii]
 gi|170652024|gb|ACB21789.1| RNA polymerase II [Trigona sp. MP109]
 gi|170652109|gb|ACB21831.1| RNA polymerase II [Melipona illustris]
          Length = 254

 Score =  474 bits (1220), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/295 (78%), Positives = 243/295 (82%), Gaps = 46/295 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 6   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 65

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 66  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 125

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 126 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 179

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 180 ----------------------------------------NTLRQTFENQVNRILNDARD 199

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 200 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 254



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 231  SQVIACVGQQNVEGKRIPFGFRKR 254


>gi|170652089|gb|ACB21821.1| RNA polymerase II [Melipona melanoventer]
          Length = 250

 Score =  474 bits (1220), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/295 (78%), Positives = 243/295 (82%), Gaps = 46/295 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 2   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 61

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 62  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 121

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 122 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 175

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 176 ----------------------------------------NTLRQTFENQVNRILNDARD 195

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 196 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 250



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 227  SQVIACVGQQNVEGKRIPFGFRKR 250


>gi|170652006|gb|ACB21780.1| RNA polymerase II [Tetragonisca angustula]
 gi|170652016|gb|ACB21785.1| RNA polymerase II [Scaptotrigona polysticta]
 gi|170652020|gb|ACB21787.1| RNA polymerase II [Friesella schrottkyi]
 gi|170652056|gb|ACB21805.1| RNA polymerase II [Melipona fuliginosa]
 gi|170652095|gb|ACB21824.1| RNA polymerase II [Melipona seminigra atrofulva]
 gi|170652139|gb|ACB21846.1| RNA polymerase II [Cephalotrigona sp. MP89]
          Length = 252

 Score =  474 bits (1220), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/295 (78%), Positives = 243/295 (82%), Gaps = 46/295 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 4   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 63

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 64  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 123

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 124 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 177

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 178 ----------------------------------------NTLRQTFENQVNRILNDARD 197

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 198 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 252



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 229  SQVIACVGQQNVEGKRIPFGFRKR 252


>gi|170652060|gb|ACB21807.1| RNA polymerase II [Melipona costaricaensis]
          Length = 252

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/295 (78%), Positives = 243/295 (82%), Gaps = 46/295 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 4   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 63

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 64  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 123

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 124 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 177

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 178 ----------------------------------------NTLRQTFENQVNRILNDARD 197

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 198 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 252



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 229  SQVIACVGQQNVEGKRIPFGFRKR 252


>gi|170652101|gb|ACB21827.1| RNA polymerase II [Melipona fuliginosa]
          Length = 248

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/294 (78%), Positives = 242/294 (82%), Gaps = 46/294 (15%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GP
Sbjct: 1   EQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGP 60

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
           Y+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+N
Sbjct: 61  YKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVIN 120

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
           NWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG       
Sbjct: 121 NWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------- 173

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
                                                  NTLRQTFENQVNRILNDARDK
Sbjct: 174 ---------------------------------------NTLRQTFENQVNRILNDARDK 194

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           TGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 195 TGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 248



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 225  SQVIACVGQQNVEGKRIPFGFRKR 248


>gi|1778036|gb|AAB40621.1| RNA polymerase II large subunit, partial [Aduncospiculum halicti]
          Length = 631

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 245/425 (57%), Positives = 301/425 (70%), Gaps = 44/425 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D++S QA  NATLL   LVRSTLC K +AE ++L++EAFEWL+GEIE RFQQA   
Sbjct: 228  VGGDDRISVQAQYNATLLMNILVRSTLCAKAMAEKHKLNAEAFEWLLGEIETRFQQAIAQ 287

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  +  Q+                 V  K +  G  R + + +  K    P    F
Sbjct: 288  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVF 347

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            +E +       ++                 K   T      L +VTANTAIYYDPDPQ+T
Sbjct: 348  LEGAAAKDAEKAKDVL-------------CKLEHTT-----LRKVTANTAIYYDPDPQST 389

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
             I ED+E+V+++YEMPDFDP+R SPWLLR+ELDRKRMTDKKLTMEAI++KI+ GFGDDLN
Sbjct: 390  CIEEDEEWVSIFYEMPDFDPSRASPWLLRLELDRKRMTDKKLTMEAIADKIHHGFGDDLN 449

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNA+KLV R+RI N D      EE+ VDKMEDDMFLRCIEANMLSD+TLQGIEAI
Sbjct: 450  VIYTDDNADKLVFRLRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGIEAI 506

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYMH P TD KK+ I+T  G FKAI +W+LETDGT+L+KVLSE++VD  RT+SNDICE
Sbjct: 507  SKVYMHKPTTDDKKKTIVTPDGSFKAIPEWILETDGTALLKVLSEQNVDQHRTYSNDICE 566

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 1349
            IF++LGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ 
Sbjct: 567  IFEILGIEAVRKAIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEV 626

Query: 1350 GALMR 1354
            GALMR
Sbjct: 627  GALMR 631



 Score =  217 bits (553), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 104/137 (75%), Positives = 116/137 (84%)

Query: 357 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 416
           KRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTA
Sbjct: 1   KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTA 60

Query: 417 ETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKK 476
           E GYIQRRLIKAMESVMV YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  S+  
Sbjct: 61  EAGYIQRRLIKAMESVMVCYDGTVRNSLAQMVQLRYGEDGLDGMWVENQTMPTMKPSNSL 120

Query: 477 FEDKYRFDPSNERPTLR 493
           FE  ++ D S+ER   R
Sbjct: 121 FERDFKMDLSDERTLKR 137



 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 107/152 (70%), Gaps = 31/152 (20%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ+T I ED+E+V+++YEMPDFDP+R SPWLLR+ELDRKRMTDKK
Sbjct: 371  LRKVTANTAIYYDPDPQSTCIEEDEEWVSIFYEMPDFDPSRASPWLLRLELDRKRMTDKK 430

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L                            TMEAI++KI+ GFGDDLN I+ DDNA+KLV 
Sbjct: 431  L----------------------------TMEAIADKIHHGFGDDLNVIYTDDNADKLVF 462

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N D      EE+ VDKMEDDMFLRCIE
Sbjct: 463  RLRITNQDKG---GEEEQVDKMEDDMFLRCIE 491



 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 71/88 (80%)

Query: 1023 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 1082
            KRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTA
Sbjct: 1    KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTA 60

Query: 1083 ETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            E   +   L +   +  + YD   +N++
Sbjct: 61   EAGYIQRRLIKAMESVMVCYDGTVRNSL 88



 Score =  134 bits (337), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/185 (42%), Positives = 107/185 (57%), Gaps = 40/185 (21%)

Query: 578 LMDAAAH-AEADPMRGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE 636
           L+D A   AEA    GYIQRRLIKAMESVMV YD TVRNS+ Q++QLRYGEDGL G  VE
Sbjct: 52  LIDTAVKTAEA----GYIQRRLIKAMESVMVCYDGTVRNSLAQMVQLRYGEDGLDGMWVE 107

Query: 637 HQRIDTVALSHKKFEDKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSW 696
           +Q + T+  S+  FE  ++ D S+ER L+R++ EDV+R++  S + I E           
Sbjct: 108 NQTMPTMKPSNSLFERDFKMDLSDERTLKRLYTEDVIRDVQSSSESIKE----------- 156

Query: 697 KQLRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
                                    E EW +L +DR+ LR+IF  G++ +VLPCNL  +I
Sbjct: 157 ------------------------AELEWMQLQDDRQLLRKIFPKGDAKIVLPCNLQRLI 192

Query: 757 FILQR 761
           +  Q+
Sbjct: 193 WNAQK 197



 Score =  103 bits (258), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 58/68 (85%), Gaps = 3/68 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  +L   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 564 ICEIFEILGIEAVRKAIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 623

Query: 830 QDTGALMR 837
           Q+ GALMR
Sbjct: 624 QEVGALMR 631



 Score = 95.5 bits (236), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/53 (79%), Positives = 48/53 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 568
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMR
Sbjct: 579 AIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMR 631


>gi|170651988|gb|ACB21771.1| RNA polymerase II [Euglossa asarophora]
          Length = 251

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/294 (78%), Positives = 242/294 (82%), Gaps = 46/294 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 4   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 63

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 64  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 123

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 124 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 177

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 178 ----------------------------------------NTLRQTFENQVNRILNDARD 197

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 365
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRK
Sbjct: 198 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 251



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/23 (95%), Positives = 23/23 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRK 1031
            +QVIACVGQQNVEGKRIPFGFRK
Sbjct: 229  SQVIACVGQQNVEGKRIPFGFRK 251


>gi|170651994|gb|ACB21774.1| RNA polymerase II [Eulaema peruviana]
          Length = 251

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/294 (78%), Positives = 242/294 (82%), Gaps = 46/294 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 4   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 63

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 64  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 123

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 124 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 177

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 178 ----------------------------------------NTLRQTFENQVNRILNDARD 197

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 365
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRK
Sbjct: 198 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 251



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/23 (95%), Positives = 23/23 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRK 1031
            +QVIACVGQQNVEGKRIPFGFRK
Sbjct: 229  SQVIACVGQQNVEGKRIPFGFRK 251


>gi|357527911|gb|AET80243.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
          Length = 322

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/293 (78%), Positives = 241/293 (82%), Gaps = 46/293 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 76  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 135

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 136 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 195

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 196 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 249

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 250 ----------------------------------------NTLRQTFENQVNRILNDARD 269

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 270 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 322



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 34   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 76



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 301  SQVIACVGQQNVEGKRIPFGFR 322


>gi|170652068|gb|ACB21811.1| RNA polymerase II [Bombus transversalis]
          Length = 249

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/295 (77%), Positives = 243/295 (82%), Gaps = 46/295 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP W+GKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 1   EEQMMNILMFLPSWNGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 60

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 61  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 120

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 121 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 174

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 175 ----------------------------------------NTLRQTFENQVNRILNDARD 194

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 195 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 249



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 226  SQVIACVGQQNVEGKRIPFGFRKR 249


>gi|357527853|gb|AET80214.1| RNA polymerase II large subunit [Heterospilus sp. GR102]
 gi|357527901|gb|AET80238.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527923|gb|AET80249.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527925|gb|AET80250.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527927|gb|AET80251.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
          Length = 325

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/293 (78%), Positives = 241/293 (82%), Gaps = 46/293 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 79  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 138

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 139 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 198

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 199 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 252

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 253 ----------------------------------------NTLRQTFENQVNRILNDARD 272

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 273 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 325



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 37   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 79



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 304  SQVIACVGQQNVEGKRIPFGFR 325


>gi|170652058|gb|ACB21806.1| RNA polymerase II [Bombus vagans]
          Length = 251

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/295 (77%), Positives = 243/295 (82%), Gaps = 46/295 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP W+GKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 3   KEQMMNILMFLPSWNGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 62

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 63  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 122

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 123 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 176

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 177 ----------------------------------------NTLRQTFENQVNRILNDARD 196

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 197 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 251



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 228  SQVIACVGQQNVEGKRIPFGFRKR 251


>gi|357527985|gb|AET80280.1| RNA polymerase II large subunit [Notiospathius ornaticornis]
          Length = 322

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/293 (78%), Positives = 241/293 (82%), Gaps = 46/293 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 76  KEQMMNLLMFLPSWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDDG 135

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 136 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 195

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 196 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 249

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 250 ----------------------------------------NTLRQTFENQVNRILNDARD 269

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 270 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 322



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 34   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 76



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 301  SQVIACVGQQNVEGKRIPFGFR 322


>gi|357527829|gb|AET80202.1| RNA polymerase II large subunit [Allorhogas sp. ALW-2011]
 gi|357527831|gb|AET80203.1| RNA polymerase II large subunit [Allorhogas sp. ALW-2011]
 gi|357527837|gb|AET80206.1| RNA polymerase II large subunit [Allorhogas sp. ALW-2011]
 gi|357527841|gb|AET80208.1| RNA polymerase II large subunit [Allorhogas sp. ALW-2011]
 gi|357527845|gb|AET80210.1| RNA polymerase II large subunit [Pioscelus sp. ALW-2011]
 gi|357527847|gb|AET80211.1| RNA polymerase II large subunit [Aphelopsia annulicornis]
 gi|357527855|gb|AET80215.1| RNA polymerase II large subunit [Heterospilus sp. GR102]
 gi|357527857|gb|AET80216.1| RNA polymerase II large subunit [Heterospilus sp. GR10]
 gi|357527859|gb|AET80217.1| RNA polymerase II large subunit [Heterospilus sp. GR19]
 gi|357527861|gb|AET80218.1| RNA polymerase II large subunit [Heterospilus sp. GR1]
 gi|357527867|gb|AET80221.1| RNA polymerase II large subunit [Heterospilus sp. GR62]
 gi|357527873|gb|AET80224.1| RNA polymerase II large subunit [Heterospilus sp. SM84]
 gi|357527879|gb|AET80227.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527881|gb|AET80228.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527883|gb|AET80229.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527885|gb|AET80230.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527887|gb|AET80231.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527891|gb|AET80233.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527893|gb|AET80234.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527895|gb|AET80235.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527897|gb|AET80236.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527905|gb|AET80240.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527907|gb|AET80241.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527909|gb|AET80242.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527915|gb|AET80245.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527917|gb|AET80246.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527919|gb|AET80247.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527921|gb|AET80248.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527937|gb|AET80256.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527941|gb|AET80258.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527951|gb|AET80263.1| RNA polymerase II large subunit [Heterospilus sp. ST1A]
 gi|357527953|gb|AET80264.1| RNA polymerase II large subunit [Heterospilus sp. ST28]
 gi|357527955|gb|AET80265.1| RNA polymerase II large subunit [Heterospilus sp. ST2]
 gi|357527957|gb|AET80266.1| RNA polymerase II large subunit [Heterospilus sp. ST2]
 gi|357527963|gb|AET80269.1| RNA polymerase II large subunit [Heterospilus sp. ST36]
 gi|357527965|gb|AET80270.1| RNA polymerase II large subunit [Heterospilus sp. ST44]
 gi|357527971|gb|AET80273.1| RNA polymerase II large subunit [Heterospilus sp. ST63]
 gi|357527979|gb|AET80277.1| RNA polymerase II large subunit [Leluthia flavocoxalis]
 gi|357527989|gb|AET80282.1| RNA polymerase II large subunit [Notiospathius sp. ALW-2011]
 gi|357527991|gb|AET80283.1| RNA polymerase II large subunit [Notiospathius sp. ALW-2011]
          Length = 326

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/293 (78%), Positives = 241/293 (82%), Gaps = 46/293 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 80  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 139

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 140 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 199

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 200 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 253

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 254 ----------------------------------------NTLRQTFENQVNRILNDARD 273

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 274 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 326



 Score = 84.3 bits (207), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 38   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 80



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 305  SQVIACVGQQNVEGKRIPFGFR 326


>gi|170652099|gb|ACB21826.1| RNA polymerase II [Melipona ogilviei]
          Length = 252

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/295 (77%), Positives = 243/295 (82%), Gaps = 46/295 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 4   KDQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 63

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 64  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 123

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 124 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 177

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 178 ----------------------------------------NTLRQTFENQVNRILNDARD 197

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 198 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 252



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 229  SQVIACVGQQNVEGKRIPFGFRKR 252


>gi|357527977|gb|AET80276.1| RNA polymerase II large subunit [Johnsonius sp. ALW-2011]
 gi|357527987|gb|AET80281.1| RNA polymerase II large subunit [Notiospathius ornaticornis]
          Length = 326

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/293 (78%), Positives = 241/293 (82%), Gaps = 46/293 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 80  KEQMMNLLMFLPSWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDDG 139

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 140 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 199

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 200 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 253

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 254 ----------------------------------------NTLRQTFENQVNRILNDARD 273

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 274 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 326



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 38   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 80



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 305  SQVIACVGQQNVEGKRIPFGFR 326


>gi|357527933|gb|AET80254.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527935|gb|AET80255.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
          Length = 326

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/293 (78%), Positives = 241/293 (82%), Gaps = 46/293 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 80  REQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 139

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 140 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 199

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 200 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 253

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 254 ----------------------------------------NTLRQTFENQVNRILNDARD 273

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 274 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 326



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+++
Sbjct: 38   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIER 80



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 305  SQVIACVGQQNVEGKRIPFGFR 326


>gi|316997019|dbj|BAJ52637.1| RNA polymerase II largest subunit [Monosiga ovata]
          Length = 1289

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/455 (53%), Positives = 303/455 (66%), Gaps = 70/455 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTH------P 125
           + Q+M +L+FLP W+G++P P ++KPK LWTGKQ+FSLI+P  +N+TR HS H      P
Sbjct: 56  RSQLMCLLLFLPNWNGRLPPPAVVKPKELWTGKQLFSLILPPGINLTREHSAHQSKNDTP 115

Query: 126 DDEDSG-PYQWISPG----DTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVC 180
              DS     W  P     DTKV+VE+G LL GI+CKKSLG S GSL+HI +L+ G E+ 
Sbjct: 116 QPSDSPETVMWKDPAITTFDTKVLVENGQLLSGIICKKSLGASGGSLIHIIWLDYGPEIT 175

Query: 181 GRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 240
            +F+GN+QTV+NNWLLLEG                                         
Sbjct: 176 RQFFGNVQTVINNWLLLEGQ---------------------------------------- 195

Query: 241 EPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFEN 300
                 SIG+ DTIAD  TY  ++  +++A ++V + I +A N  LEP PGNTL QTFE 
Sbjct: 196 ------SIGVKDTIADENTYRAVRSCLERATKEVDKTITEARNDLLEPKPGNTLLQTFEL 249

Query: 301 QVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP 360
            VN ILN AR++TG  A+KSL+E+NN KAM +AGSKGS++NISQVIACVGQQNVEGKRIP
Sbjct: 250 TVNEILNKAREETGSDAEKSLSEFNNFKAMAIAGSKGSSLNISQVIACVGQQNVEGKRIP 309

Query: 361 FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGY 420
           FGF+ RTLPHFIKDDYGPESRGFV NSYLAGL+P EFFFHAMGGREGLIDTAVKTA TGY
Sbjct: 310 FGFKHRTLPHFIKDDYGPESRGFVFNSYLAGLSPQEFFFHAMGGREGLIDTAVKTATTGY 369

Query: 421 IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDK 480
           IQRRL+KAME + +HYD +VRNS G L+QL YGED + G +VEHQ +  V  S++ F+++
Sbjct: 370 IQRRLVKAMEGLTLHYDGSVRNSNGDLLQLLYGEDFMDGVSVEHQNVPVVTQSNRDFKNR 429

Query: 481 Y-------------RFDPSNERPTLRNVSSLRRVV 502
           Y             R D S  R  L N + ++R+V
Sbjct: 430 YNLDVEADKELIAGRLDESISRDVLSNPTVMQRLV 464



 Score =  322 bits (825), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 197/481 (40%), Positives = 276/481 (57%), Gaps = 61/481 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV- 1011
            V G DQLS  A  N+TL F  +++S L  K V +++RL+  AF W++GE+E RF  A+  
Sbjct: 538  VPGNDQLSATAQHNSTLFFSSMLKSVLSAKKVLKDHRLTQSAFSWILGEVEQRFMLARAH 597

Query: 1012 ---------IACVGQ------------QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
                       C+G+              V  K +  G  +  L   I     P++   V
Sbjct: 598  PGEMVGALAAECLGEPLTQMTLNTFHYAGVSSKNVTLGVPR--LQEIINVSKAPKTPSLV 655

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
               YL G   S+             + A K    +  L  L QVTA++AI ++PD  N+V
Sbjct: 656  --IYLLGEAVSD------------KNEAKKVLNELE-LCTLRQVTASSAIIFEPDHFNSV 700

Query: 1111 IPEDQEFVNVYYEMPDFDP------TRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            + ED++FV  +      DP          PW+LRI +D K   DK  ++  I  +I    
Sbjct: 701  VVEDRDFVRDFIGT---DPQVREQLKTCPPWVLRIVMDSKLFWDKGFSLSDIQTRITEKV 757

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
              ++   +ND+NA +LVLR+ I  +       EE AV+  +D   LR +EA ++ D+ L 
Sbjct: 758  -PEVVVTYNDENASQLVLRLSINKAG------EEVAVEVSDDLSTLRALEAFIM-DIPLA 809

Query: 1225 GIEAIGKVYMHLP----QTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPV 1280
            G++AI KVYM+ P    Q D K+R+ +++ G +K   +WLLETDG++L+ V+  R VD  
Sbjct: 810  GLKAITKVYMNFPDDKVQRD-KQRMTVSDDGSYKFTPEWLLETDGSALLDVMCNRHVDAY 868

Query: 1281 RTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAIT 1340
            RT +ND+ E F VLGIEA R+ VE E+  VL   G YVNYRHL+LLC++MT+KG+LMAIT
Sbjct: 869  RTMTNDVVECFSVLGIEAGRQCVENEIKNVLDNSGAYVNYRHLSLLCNIMTSKGYLMAIT 928

Query: 1341 RHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1400
            RHG+NRQ  GALMRCSFEETVD+LM+A+AHAE D +RGVSENI++G L   GTG FDL L
Sbjct: 929  RHGVNRQKVGALMRCSFEETVDILMEASAHAECDHLRGVSENIMLGNLVPAGTGFFDLFL 988

Query: 1401 D 1401
            +
Sbjct: 989  N 989



 Score =  157 bits (397), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 74/112 (66%), Positives = 85/112 (75%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   +    +QVIACVGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFV NSYLAG
Sbjct: 281  IAGSKGSSLNISQVIACVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVFNSYLAG 340

Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            L+P EFFFHAMGGREGLIDTAVKTA T  +   L +      ++YD   +N+
Sbjct: 341  LSPQEFFFHAMGGREGLIDTAVKTATTGYIQRRLVKAMEGLTLHYDGSVRNS 392



 Score =  156 bits (395), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 93/180 (51%), Positives = 114/180 (63%), Gaps = 24/180 (13%)

Query: 783  RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 842
            R+ VE E+  VL   G YVNYRHL+LLC++MT+KG+LMAITRHG+NRQ  GALMRCSFEE
Sbjct: 888  RQCVENEIKNVLDNSGAYVNYRHLSLLCNIMTSKGYLMAITRHGVNRQKVGALMRCSFEE 947

Query: 843  TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL-----------DAEKCKDG 891
            TVD+LM+A+AHAE D +RGVSENI++G L   GTG FDL L           + E     
Sbjct: 948  TVDILMEASAHAECDHLRGVSENIMLGNLVPAGTGFFDLFLNEGMLEYALPHNTEINDPV 1007

Query: 892  IEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS--TPA-YNALMSPG--AAMTPGG 946
             + P+A      PA M    ++TP       TP A    +PA  NA MSPG  AA +PGG
Sbjct: 1008 FDKPIAP----TPAQM----SSTPDYTFGPGTPVANMGFSPADTNAGMSPGWSAAASPGG 1059



 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 77/107 (71%), Gaps = 10/107 (9%)

Query: 493 RNVSSLRRVVNSKPLLIGCWKLTS-------VEKEMNTVLQFYGLYVNYRHLALLCDVMT 545
           R+V + R + N    ++ C+ +         VE E+  VL   G YVNYRHL+LLC++MT
Sbjct: 863 RHVDAYRTMTND---VVECFSVLGIEAGRQCVENEIKNVLDNSGAYVNYRHLSLLCNIMT 919

Query: 546 AKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 592
           +KG+LMAITRHG+NRQ  GALMRCSFEETVD+LM+A+AHAE D +RG
Sbjct: 920 SKGYLMAITRHGVNRQKVGALMRCSFEETVDILMEASAHAECDHLRG 966



 Score = 98.6 bits (244), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 88/170 (51%), Gaps = 34/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME + +HYD +VRNS G L+QL YGED + G +VEHQ +  V  S++ F+
Sbjct: 368 GYIQRRLVKAMEGLTLHYDGSVRNSNGDLLQLLYGEDFMDGVSVEHQNVPVVTQSNRDFK 427

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           ++Y  D                           E +KE++            +E + R++
Sbjct: 428 NRYNLD--------------------------VEADKELIAGR--------LDESISRDV 453

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
           + +  V+  L +E+E L   R   R++F  GE   VLP NL  +I+  Q+
Sbjct: 454 LSNPTVMQRLVEEFEDLQRVRSECRQLFLRGEDKAVLPVNLDRLIWNAQK 503



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 38/49 (77%), Gaps = 1/49 (2%)

Query: 1483 LTLTLMVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            LT   ++EN+ V  + +++PQ NRPVMGIVQDTL A RK+TKRD F+++
Sbjct: 9    LTRAEIIENMMVH-KNVLSPQANRPVMGIVQDTLCAARKLTKRDTFIER 56



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 44/158 (27%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDP------TRISPWLLRIELDRK 1582
            L +VTA++AI ++PD  N+V+ ED++FV  +      DP          PW+LRI +D K
Sbjct: 681  LRQVTASSAIIFEPDHFNSVVVEDRDFVRDFIGT---DPQVREQLKTCPPWVLRIVMDSK 737

Query: 1583 RMTDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDN 1642
               DK  ++  I  +                        I+EK+      ++   +ND+N
Sbjct: 738  LFWDKGFSLSDIQTR------------------------ITEKV-----PEVVVTYNDEN 768

Query: 1643 AEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            A +LVLR+ I  +       EE AV+  +D   LR +E
Sbjct: 769  ASQLVLRLSINKA------GEEVAVEVSDDLSTLRALE 800


>gi|170652143|gb|ACB21848.1| RNA polymerase II [Melipona sp. MP91]
          Length = 250

 Score =  472 bits (1214), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/294 (78%), Positives = 242/294 (82%), Gaps = 46/294 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 3   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 62

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 63  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 122

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 123 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 176

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 177 ----------------------------------------NTLRQTFENQVNRILNDARD 196

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 365
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRK
Sbjct: 197 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 250



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/23 (95%), Positives = 23/23 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRK 1031
            +QVIACVGQQNVEGKRIPFGFRK
Sbjct: 228  SQVIACVGQQNVEGKRIPFGFRK 250


>gi|222089670|gb|ACM42394.1| RNA polymerase II [Trigonisca sp. A CR-2009]
          Length = 266

 Score =  472 bits (1214), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/295 (77%), Positives = 242/295 (82%), Gaps = 46/295 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELG EVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGXEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 266



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 243  SQVIACVGQQNVEGKRIPFGFRKR 266


>gi|170652040|gb|ACB21797.1| RNA polymerase II [Melipona melanopleura]
 gi|170652087|gb|ACB21820.1| RNA polymerase II [Melipona aff. costaricaensis MP33]
 gi|170652149|gb|ACB21851.1| RNA polymerase II [Melipona illota]
          Length = 253

 Score =  472 bits (1214), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/294 (78%), Positives = 242/294 (82%), Gaps = 46/294 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 6   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 65

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 66  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 125

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 126 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 179

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 180 ----------------------------------------NTLRQTFENQVNRILNDARD 199

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 365
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRK
Sbjct: 200 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 253



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/23 (95%), Positives = 23/23 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRK 1031
            +QVIACVGQQNVEGKRIPFGFRK
Sbjct: 231  SQVIACVGQQNVEGKRIPFGFRK 253


>gi|170652123|gb|ACB21838.1| RNA polymerase II [Melipona marginata]
          Length = 248

 Score =  472 bits (1214), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/294 (78%), Positives = 242/294 (82%), Gaps = 46/294 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 1   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 60

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 61  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 120

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 121 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 174

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 175 ----------------------------------------NTLRQTFENQVNRILNDARD 194

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 365
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRK
Sbjct: 195 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 248



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/23 (95%), Positives = 23/23 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRK 1031
            +QVIACVGQQNVEGKRIPFGFRK
Sbjct: 226  SQVIACVGQQNVEGKRIPFGFRK 248


>gi|357527945|gb|AET80260.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
          Length = 326

 Score =  472 bits (1214), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/292 (78%), Positives = 240/292 (82%), Gaps = 46/292 (15%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GP
Sbjct: 81  EQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGP 140

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
           Y+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+N
Sbjct: 141 YKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVIN 200

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
           NWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG       
Sbjct: 201 NWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------- 253

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
                                                  NTLRQTFENQVNRILNDARDK
Sbjct: 254 ---------------------------------------NTLRQTFENQVNRILNDARDK 274

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           TGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 275 TGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 326



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 54/88 (61%), Gaps = 21/88 (23%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+                   
Sbjct: 38   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI------------------- 78

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLR 1576
              E ++ +N+   +P +D     P +L+
Sbjct: 79   --EXEQMMNILMFLPSWDGKMPQPCILK 104



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 305  SQVIACVGQQNVEGKRIPFGFR 326


>gi|357527931|gb|AET80253.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
          Length = 326

 Score =  471 bits (1213), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/293 (78%), Positives = 241/293 (82%), Gaps = 46/293 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 80  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 139

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 140 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 199

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTY+EIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 200 NNWLLLEGHSIGIGDTIADPQTYMEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 253

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 254 ----------------------------------------NTLRQTFENQVNRILNDARD 273

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 274 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 326



 Score = 84.3 bits (207), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 38   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 80



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 305  SQVIACVGQQNVEGKRIPFGFR 326


>gi|170652115|gb|ACB21834.1| RNA polymerase II [Melipona rufiventris flavolineata]
          Length = 251

 Score =  471 bits (1213), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/294 (78%), Positives = 242/294 (82%), Gaps = 46/294 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 4   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 63

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 64  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 123

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 124 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 177

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 178 ----------------------------------------NTLRQTFENQVNRILNDARD 197

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 365
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRK
Sbjct: 198 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 251



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/23 (95%), Positives = 23/23 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRK 1031
            +QVIACVGQQNVEGKRIPFGFRK
Sbjct: 229  SQVIACVGQQNVEGKRIPFGFRK 251


>gi|170652103|gb|ACB21828.1| RNA polymerase II [Melipona captiosa]
          Length = 251

 Score =  471 bits (1213), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/294 (78%), Positives = 242/294 (82%), Gaps = 46/294 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 4   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 63

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 64  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 123

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 124 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 177

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 178 ----------------------------------------NTLRQTFENQVNRILNDARD 197

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 365
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRK
Sbjct: 198 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 251



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/23 (95%), Positives = 23/23 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRK 1031
            +QVIACVGQQNVEGKRIPFGFRK
Sbjct: 229  SQVIACVGQQNVEGKRIPFGFRK 251


>gi|170652091|gb|ACB21822.1| RNA polymerase II [Melipona fuscopilosa]
          Length = 247

 Score =  471 bits (1213), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/293 (78%), Positives = 241/293 (82%), Gaps = 46/293 (15%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           QMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY
Sbjct: 1   QMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPY 60

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           +WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NN
Sbjct: 61  KWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINN 120

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG        
Sbjct: 121 WLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG-------- 172

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
                                                 NTLRQTFENQVNRILNDARDKT
Sbjct: 173 --------------------------------------NTLRQTFENQVNRILNDARDKT 194

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           GGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 195 GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 247



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 224  SQVIACVGQQNVEGKRIPFGFRKR 247


>gi|170652050|gb|ACB21802.1| RNA polymerase II [Melipona sp. MP127]
          Length = 251

 Score =  471 bits (1212), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/294 (78%), Positives = 242/294 (82%), Gaps = 46/294 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 4   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 63

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 64  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 123

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 124 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 177

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 178 ----------------------------------------NTLRQTFENQVNRILNDARD 197

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 365
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRK
Sbjct: 198 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 251



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/23 (95%), Positives = 23/23 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRK 1031
            +QVIACVGQQNVEGKRIPFGFRK
Sbjct: 229  SQVIACVGQQNVEGKRIPFGFRK 251


>gi|170652028|gb|ACB21791.1| RNA polymerase II [Apis dorsata]
          Length = 248

 Score =  471 bits (1212), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/293 (78%), Positives = 241/293 (82%), Gaps = 46/293 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 2   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 61

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 62  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 121

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 122 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 175

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 176 ----------------------------------------NTLRQTFENQVNRILNDARD 195

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 196 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 248



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 227  SQVIACVGQQNVEGKRIPFGFR 248


>gi|357528001|gb|AET80288.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
          Length = 325

 Score =  471 bits (1212), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/293 (78%), Positives = 241/293 (82%), Gaps = 46/293 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 79  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 138

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGH+VCGRFYGNIQTV+
Sbjct: 139 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHDVCGRFYGNIQTVI 198

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 199 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 252

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 253 ----------------------------------------NTLRQTFENQVNRILNDARD 272

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 273 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 325



 Score = 84.3 bits (207), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 37   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 79



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 304  SQVIACVGQQNVEGKRIPFGFR 325


>gi|357527843|gb|AET80209.1| RNA polymerase II large subunit [Pioscelus sp. ALW-2011]
 gi|357527889|gb|AET80232.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527967|gb|AET80271.1| RNA polymerase II large subunit [Heterospilus sp. ST4]
 gi|357527993|gb|AET80284.1| RNA polymerase II large subunit [Notiospathius sp. ALW-2011]
          Length = 326

 Score =  471 bits (1211), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/293 (78%), Positives = 241/293 (82%), Gaps = 46/293 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 80  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 139

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGH+VCGRFYGNIQTV+
Sbjct: 140 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHDVCGRFYGNIQTVI 199

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 200 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 253

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 254 ----------------------------------------NTLRQTFENQVNRILNDARD 273

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 274 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 326



 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 38   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 80



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 305  SQVIACVGQQNVEGKRIPFGFR 326


>gi|170652083|gb|ACB21818.1| RNA polymerase II [Melipona rufiventris]
          Length = 254

 Score =  471 bits (1211), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/295 (77%), Positives = 242/295 (82%), Gaps = 46/295 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD++D G
Sbjct: 6   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEQDDG 65

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 66  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 125

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 126 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 179

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 180 ----------------------------------------NTLRQTFENQVNRILNDARD 199

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKR PFGFRKR
Sbjct: 200 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRFPFGFRKR 254



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/24 (91%), Positives = 23/24 (95%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKR PFGFRKR
Sbjct: 231  SQVIACVGQQNVEGKRFPFGFRKR 254


>gi|357527995|gb|AET80285.1| RNA polymerase II large subunit [Spathius calligaster]
          Length = 326

 Score =  471 bits (1211), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/293 (78%), Positives = 240/293 (81%), Gaps = 46/293 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 80  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDEG 139

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGH+VCGRFYGNIQTV+
Sbjct: 140 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHDVCGRFYGNIQTVI 199

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTY EIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 200 NNWLLLEGHSIGIGDTIADPQTYAEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 253

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 254 ----------------------------------------NTLRQTFENQVNRILNDARD 273

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 274 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 326



 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 38   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 80



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 305  SQVIACVGQQNVEGKRIPFGFR 326


>gi|357527833|gb|AET80204.1| RNA polymerase II large subunit [Allorhogas sp. ALW-2011]
          Length = 326

 Score =  471 bits (1211), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/293 (78%), Positives = 241/293 (82%), Gaps = 46/293 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPD+ED G
Sbjct: 80  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNIIRTHSTHPDEEDDG 139

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 140 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 199

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 200 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 253

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 254 ----------------------------------------NTLRQTFENQVNRILNDARD 273

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 274 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 326



 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 38   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 80



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 305  SQVIACVGQQNVEGKRIPFGFR 326


>gi|170652141|gb|ACB21847.1| RNA polymerase II [Melipona sp. MP90]
          Length = 254

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/295 (77%), Positives = 242/295 (82%), Gaps = 46/295 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 6   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 65

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 66  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 125

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 126 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 179

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 180 ----------------------------------------NTLRQTFENQVNRILNDARD 199

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIA VGQQNVEGKRIPFGFRKR
Sbjct: 200 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIAXVGQQNVEGKRIPFGFRKR 254



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/24 (91%), Positives = 23/24 (95%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIA VGQQNVEGKRIPFGFRKR
Sbjct: 231  SQVIAXVGQQNVEGKRIPFGFRKR 254


>gi|170651996|gb|ACB21775.1| RNA polymerase II [Euglossa villosa]
          Length = 251

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/294 (78%), Positives = 241/294 (81%), Gaps = 46/294 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +E MMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 4   KEXMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 63

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 64  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 123

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 124 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 177

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 178 ----------------------------------------NTLRQTFENQVNRILNDARD 197

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 365
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRK
Sbjct: 198 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 251



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/23 (95%), Positives = 23/23 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRK 1031
            +QVIACVGQQNVEGKRIPFGFRK
Sbjct: 229  SQVIACVGQQNVEGKRIPFGFRK 251


>gi|357527903|gb|AET80239.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
          Length = 324

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/292 (78%), Positives = 240/292 (82%), Gaps = 46/292 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 79  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 138

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 139 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 198

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 199 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 252

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 253 ----------------------------------------NTLRQTFENQVNRILNDARD 272

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGF 363
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGF
Sbjct: 273 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGF 324



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 37   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 79



 Score = 48.1 bits (113), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 20/21 (95%), Positives = 21/21 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGF 1029
            +QVIACVGQQNVEGKRIPFGF
Sbjct: 304  SQVIACVGQQNVEGKRIPFGF 324


>gi|357527947|gb|AET80261.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
          Length = 326

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/293 (78%), Positives = 240/293 (81%), Gaps = 46/293 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 80  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 139

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 140 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 199

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVI VIQKAHNM+LEPTPG      
Sbjct: 200 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIAVIQKAHNMELEPTPG------ 253

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 254 ----------------------------------------NTLRQTFENQVNRILNDARD 273

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 274 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 326



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 38   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 80



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 305  SQVIACVGQQNVEGKRIPFGFR 326


>gi|317417212|emb|CBI70636.1| RNA polymerase II [Triplectides jaffueli]
          Length = 267

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 234/313 (74%), Positives = 245/313 (78%), Gaps = 46/313 (14%)

Query: 93  CILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
           CILKPKPLWTGKQ+FS IIPG VN  R HST   +E  GP  WIS G TKV+VEHG L+M
Sbjct: 1   CILKPKPLWTGKQIFSXIIPGXVNXIRXHSTXXXEEXXGPXXWISXGXTKVMVEHGELIM 60

Query: 153 GILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 212
           GILCKK+LGTS+GSLLHIC  +LGH V G FYGNIQTVVNNWLLL+G             
Sbjct: 61  GILCKKTLGTSAGSLLHICMXDLGHXVSGXFYGNIQTVVNNWLLLDG------------- 107

Query: 213 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKE 272
                                            HSIGIGDTIADPQTYLEIQ AIKKAKE
Sbjct: 108 ---------------------------------HSIGIGDTIADPQTYLEIQRAIKKAKE 134

Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
           DVIEVIQKAHNM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV
Sbjct: 135 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 194

Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 392
           +GSKGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL
Sbjct: 195 SGSKGSXINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 254

Query: 393 TPSEFFFHAMGGR 405
           TPSEF+FHAMGGR
Sbjct: 255 TPSEFYFHAMGGR 267



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 205  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 264

Query: 1069 GGR 1071
            GGR
Sbjct: 265  GGR 267


>gi|357527863|gb|AET80219.1| RNA polymerase II large subunit [Heterospilus sp. GR20]
 gi|357527929|gb|AET80252.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527943|gb|AET80259.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
          Length = 325

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/292 (78%), Positives = 240/292 (82%), Gaps = 46/292 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 80  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 139

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 140 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 199

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 200 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 253

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 254 ----------------------------------------NTLRQTFENQVNRILNDARD 273

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGF 363
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGF
Sbjct: 274 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGF 325



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 38   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 80



 Score = 48.1 bits (113), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 20/21 (95%), Positives = 21/21 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGF 1029
            +QVIACVGQQNVEGKRIPFGF
Sbjct: 305  SQVIACVGQQNVEGKRIPFGF 325


>gi|357527827|gb|AET80201.1| RNA polymerase II large subunit [Aleiodes sp. ALW-2011]
          Length = 326

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/293 (78%), Positives = 240/293 (81%), Gaps = 46/293 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 80  REQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 139

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 140 PYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 199

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 200 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 253

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTF NQVNRILNDARD
Sbjct: 254 ----------------------------------------NTLRQTFXNQVNRILNDARD 273

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 274 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 326



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+++
Sbjct: 38   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIER 80



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 305  SQVIACVGQQNVEGKRIPFGFR 326


>gi|357527875|gb|AET80225.1| RNA polymerase II large subunit [Heterospilus sp. SM97]
          Length = 325

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/293 (78%), Positives = 240/293 (81%), Gaps = 46/293 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 79  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 138

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 139 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 198

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 199 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 252

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDA D
Sbjct: 253 ----------------------------------------NTLRQTFENQVNRILNDAXD 272

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 273 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 325



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 37   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 79



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 304  SQVIACVGQQNVEGKRIPFGFR 325


>gi|170652085|gb|ACB21819.1| RNA polymerase II [Melipona crinita]
          Length = 247

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/293 (78%), Positives = 241/293 (82%), Gaps = 46/293 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 1   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 60

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 61  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 120

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 121 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 174

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 175 ----------------------------------------NTLRQTFENQVNRILNDARD 194

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 195 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 247



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 226  SQVIACVGQQNVEGKRIPFGFR 247


>gi|170652002|gb|ACB21778.1| RNA polymerase II [Eufriesea caerulescens]
          Length = 251

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/294 (78%), Positives = 241/294 (81%), Gaps = 46/294 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 4   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 63

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 64  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 123

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 124 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 177

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 178 ----------------------------------------NTLRQTFENQVNRILNDARD 197

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 365
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRI FGFRK
Sbjct: 198 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIRFGFRK 251



 Score = 48.1 bits (113), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/23 (91%), Positives = 22/23 (95%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRK 1031
            +QVIACVGQQNVEGKRI FGFRK
Sbjct: 229  SQVIACVGQQNVEGKRIRFGFRK 251


>gi|170652004|gb|ACB21779.1| RNA polymerase II [Melipona panamica]
          Length = 248

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/294 (77%), Positives = 241/294 (81%), Gaps = 46/294 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 1   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 60

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 61  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 120

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 121 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 174

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 175 ----------------------------------------NTLRQTFENQVNRILNDARD 194

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 365
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVG QNVEGKRIPFGFRK
Sbjct: 195 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGHQNVEGKRIPFGFRK 248



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/23 (91%), Positives = 22/23 (95%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRK 1031
            +QVIACVG QNVEGKRIPFGFRK
Sbjct: 226  SQVIACVGHQNVEGKRIPFGFRK 248


>gi|356605956|gb|AET25009.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 7
            KK-2011]
          Length = 621

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/427 (56%), Positives = 304/427 (71%), Gaps = 42/427 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+G+D++SKQA  NATLL   L+RSTLCTK +    +L++EAF+WL+GEIE+RFQQA   
Sbjct: 214  VSGKDEISKQAQYNATLLMNILLRSTLCTKKLCTTSKLNTEAFDWLLGEIESRFQQAIAQ 273

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  +  Q+                 V  K +  G  R + + +  K    P    F
Sbjct: 274  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVF 333

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            +  +             A    E   D   K   T      L +VT NTAIYYDPDP+NT
Sbjct: 334  LTGA-------------AAKDPEKAKDVLCKLEHTT-----LKKVTMNTAIYYDPDPKNT 375

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            VI ED+E+V+++YEMPD D ++ SPW+LRIELDRKRMTDKKLTME I+++I++GFG D++
Sbjct: 376  VITEDEEWVSIFYEMPDNDLSKTSPWVLRIELDRKRMTDKKLTMELIADRIHSGFGSDVH 435

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV R+RI   DD   + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI
Sbjct: 436  TIYTDDNAEKLVFRLRIA-GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAI 494

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYM+ P TD KKRIIIT  G FKA+ADW+LETDGT+L++VLSER +DPVRT+SNDICE
Sbjct: 495  SKVYMNQPNTDDKKRIIITPEGGFKAVADWILETDGTALLRVLSERQIDPVRTYSNDICE 554

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 1349
            IF+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ 
Sbjct: 555  IFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEV 614

Query: 1350 GALMRCS 1356
            GALMRCS
Sbjct: 615  GALMRCS 621



 Score =  184 bits (468), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 104/126 (82%)

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           FIKDDYGPES+GFVENSYLAGLT +EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME
Sbjct: 1   FIKDDYGPESKGFVENSYLAGLTAAEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 60

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE  +R D ++ + 
Sbjct: 61  SVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKF 120

Query: 491 TLRNVS 496
              N S
Sbjct: 121 VRTNYS 126



 Score =  167 bits (423), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 84/152 (55%), Positives = 106/152 (69%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D ++ SPW+LRIELDRKRMTDKK
Sbjct: 357  LKKVTMNTAIYYDPDPKNTVITEDEEWVSIFYEMPDNDLSKTSPWVLRIELDRKRMTDKK 416

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I++GFG D++T                            I+ DDNAEKLV 
Sbjct: 417  LTMELIADRIHSGFGSDVHT----------------------------IYTDDNAEKLVF 448

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   DD   + +E+ VDKMEDD+FLRCIE
Sbjct: 449  RLRIA-GDDKNAETQEEQVDKMEDDVFLRCIE 479



 Score =  125 bits (313), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 99/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 49  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 108

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++ + +R  ++E+V+RE+  S + IS +E                        
Sbjct: 109 RDFRMDLTDNKFVRTNYSEEVVREIQESQEGISLVE------------------------ 144

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 145 -----------SEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQK 183



 Score =  110 bits (276), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 60/70 (85%), Gaps = 3/70 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 552 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 611

Query: 830 QDTGALMRCS 839
           Q+ GALMRCS
Sbjct: 612 QEVGALMRCS 621



 Score =  104 bits (260), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 58/74 (78%)

Query: 1037 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTA 1096
            FIKDDYGPES+GFVENSYLAGLT +EFFFHAMGGREGLIDTAVKTAET  +   L +   
Sbjct: 1    FIKDDYGPESKGFVENSYLAGLTAAEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 60

Query: 1097 NTAIYYDPDPQNTV 1110
            +  + YD   +N++
Sbjct: 61   SVMVNYDGTVRNSL 74



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/55 (80%), Positives = 50/55 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 570
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCS
Sbjct: 567 AIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCS 621


>gi|170652073|gb|ACB21813.1| RNA polymerase II [Melipona favosa]
          Length = 246

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/292 (78%), Positives = 240/292 (82%), Gaps = 46/292 (15%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           MMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+
Sbjct: 1   MMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYK 60

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNW
Sbjct: 61  WISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNW 120

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG         
Sbjct: 121 LLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG--------- 171

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                NTLRQTFENQVNRILNDARDKTG
Sbjct: 172 -------------------------------------NTLRQTFENQVNRILNDARDKTG 194

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           GSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 195 GSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 246



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 223  SQVIACVGQQNVEGKRIPFGFRKR 246


>gi|357527871|gb|AET80223.1| RNA polymerase II large subunit [Heterospilus sp. SM67]
          Length = 325

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/292 (78%), Positives = 240/292 (82%), Gaps = 46/292 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 80  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDEG 139

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGH+VCGRFYGNIQTV+
Sbjct: 140 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHDVCGRFYGNIQTVI 199

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 200 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 253

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 254 ----------------------------------------NTLRQTFENQVNRILNDARD 273

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGF 363
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGF
Sbjct: 274 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGF 325



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 38   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 80



 Score = 48.1 bits (113), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 20/21 (95%), Positives = 21/21 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGF 1029
            +QVIACVGQQNVEGKRIPFGF
Sbjct: 305  SQVIACVGQQNVEGKRIPFGF 325


>gi|357527849|gb|AET80212.1| RNA polymerase II large subunit [Barbalhoa sp. ALW-2011]
          Length = 326

 Score =  468 bits (1204), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/293 (77%), Positives = 240/293 (81%), Gaps = 46/293 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPC+LKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 80  KEQMMNILMFLPSWDGKMPQPCVLKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 139

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 140 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 199

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTY EIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 200 NNWLLLEGHSIGIGDTIADPQTYNEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 253

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 254 ----------------------------------------NTLRQTFENQVNRILNDARD 273

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 274 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 326



 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 38   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 80



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 305  SQVIACVGQQNVEGKRIPFGFR 326


>gi|170652119|gb|ACB21836.1| RNA polymerase II [Melipona rufiventris rufiventris]
          Length = 248

 Score =  468 bits (1204), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/294 (77%), Positives = 241/294 (81%), Gaps = 46/294 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 1   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 60

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 61  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 120

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 121 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 174

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 175 ----------------------------------------NTLRQTFENQVNRILNDARD 194

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 365
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP GFRK
Sbjct: 195 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPEGFRK 248



 Score = 48.1 bits (113), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/23 (91%), Positives = 22/23 (95%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRK 1031
            +QVIACVGQQNVEGKRIP GFRK
Sbjct: 226  SQVIACVGQQNVEGKRIPEGFRK 248


>gi|357527999|gb|AET80287.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
          Length = 320

 Score =  468 bits (1204), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/291 (78%), Positives = 239/291 (82%), Gaps = 46/291 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 76  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 135

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 136 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 195

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 196 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 249

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 250 ----------------------------------------NTLRQTFENQVNRILNDARD 269

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFG 362
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFG
Sbjct: 270 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFG 320



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 34   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 76



 Score = 45.4 bits (106), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFG 1028
            +QVIACVGQQNVEGKRIPFG
Sbjct: 301  SQVIACVGQQNVEGKRIPFG 320


>gi|357527899|gb|AET80237.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
          Length = 326

 Score =  468 bits (1203), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/293 (78%), Positives = 240/293 (81%), Gaps = 46/293 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP  DGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 80  KEQMMNILMFLPSXDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 139

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 140 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 199

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 200 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 253

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 254 ----------------------------------------NTLRQTFENQVNRILNDARD 273

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 274 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 326



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 38   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 80



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 305  SQVIACVGQQNVEGKRIPFGFR 326


>gi|1778038|gb|AAB40622.1| RNA polymerase II large subunit, partial [Zeldia punctata]
          Length = 629

 Score =  468 bits (1203), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/430 (56%), Positives = 303/430 (70%), Gaps = 53/430 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+GED++SKQA  NATLL   L+RSTLC+K VA+ ++L++EAFEW++GEIE RF QA   
Sbjct: 225  VSGEDRISKQAQYNATLLMNILLRSTLCSKQVAKVHKLNTEAFEWILGEIETRFNQAIAQ 284

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 285  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINVSKRPK----- 337

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L   A K AE    ++       L +VTANTA YYDP
Sbjct: 338  --------TPSLTIF--------LQGQAAKDAERAKDVLCKLEHCTLRKVTANTADYYDP 381

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DP+NT I EDQE+V ++YEMPDFDP   SPWLLR+ELDRKRMTDKKLTMEAI+EKI+ GF
Sbjct: 382  DPKNTCIEEDQEWVQIFYEMPDFDPANASPWLLRLELDRKRMTDKKLTMEAIAEKIHKGF 441

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            G+DL+ I+ DDNA+KLV  IR+ NS   K  + E+ +DKMEDD FL+CIE+NMLSD+TLQ
Sbjct: 442  GEDLHVIYTDDNADKLVFHIRLTNSTTDK--ESEEQIDKMEDDTFLKCIESNMLSDLTLQ 499

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIEAI KVYMH PQTD KKR+ +T+ G F+ +++W+LETDGT+L++VLSE +VDP+RT+S
Sbjct: 500  GIEAISKVYMHKPQTDDKKRVEVTQDGSFRMVSEWMLETDGTALLRVLSEPNVDPIRTYS 559

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIF+VLGIEAVRK++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 560  NDICEIFEVLGIEAVRKAIEREMNQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 619

Query: 1345 NRQDTGALMR 1354
            NRQ+ GALMR
Sbjct: 620  NRQEVGALMR 629



 Score =  216 bits (550), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 102/134 (76%), Positives = 116/134 (86%)

Query: 360 PFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETG 419
           PFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETG
Sbjct: 1   PFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTAETG 60

Query: 420 YIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED 479
           YIQRRLIKAMESVMV+YD TVRNSVGQ++QLRYGEDGL G  VE Q + T+  ++  FE 
Sbjct: 61  YIQRRLIKAMESVMVNYDGTVRNSVGQMVQLRYGEDGLDGMWVEAQTMPTMKPNNSLFEK 120

Query: 480 KYRFDPSNERPTLR 493
           +++ D ++ER   R
Sbjct: 121 QFKLDLTDERDLRR 134



 Score =  169 bits (428), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/152 (56%), Positives = 102/152 (67%), Gaps = 30/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTA YYDPDP+NT I EDQE+V ++YEMPDFDP   SPWLLR+ELDRKRMTDKK
Sbjct: 368  LRKVTANTADYYDPDPKNTCIEEDQEWVQIFYEMPDFDPANASPWLLRLELDRKRMTDKK 427

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTMEAI+EKI+ G                            FG+DL+ I+ DDNA+KLV 
Sbjct: 428  LTMEAIAEKIHKG----------------------------FGEDLHVIYTDDNADKLVF 459

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
             IR+ NS   K  + E+ +DKMEDD FL+CIE
Sbjct: 460  HIRLTNSTTDK--ESEEQIDKMEDDTFLKCIE 489



 Score =  142 bits (358), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 101/166 (60%), Gaps = 35/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQ++QLRYGEDGL G  VE Q + T+  ++  FE
Sbjct: 60  GYIQRRLIKAMESVMVNYDGTVRNSVGQMVQLRYGEDGLDGMWVEAQTMPTMKPNNSLFE 119

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++ D ++ER LRRI+ + V+REL+GS D + E+E                        
Sbjct: 120 KQFKLDLTDERDLRRIYXDSVVRELLGSADALREVE------------------------ 155

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIF 757
                       EW++L EDR  LR+IF  G++ V LPCNL  +I+
Sbjct: 156 -----------SEWQQLEEDRRLLRKIFPKGDAKVHLPCNLKRLIW 190



 Score =  133 bits (334), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/85 (71%), Positives = 69/85 (81%)

Query: 1026 PFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV 1085
            PFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAET 
Sbjct: 1    PFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTAETG 60

Query: 1086 NVLVFLFQVTANTAIYYDPDPQNTV 1110
             +   L +   +  + YD   +N+V
Sbjct: 61   YIQRRLIKAMESVMVNYDGTVRNSV 85



 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 58/68 (85%), Gaps = 3/68 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 562 ICEIFEVLGIEAVRKAIEREMNQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 621

Query: 830 QDTGALMR 837
           Q+ GALMR
Sbjct: 622 QEVGALMR 629



 Score = 97.4 bits (241), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/53 (81%), Positives = 48/53 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 568
           ++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMR
Sbjct: 577 AIEREMNQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMR 629


>gi|357527869|gb|AET80222.1| RNA polymerase II large subunit [Heterospilus sp. SM13]
          Length = 323

 Score =  468 bits (1203), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/291 (78%), Positives = 239/291 (82%), Gaps = 46/291 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 79  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 138

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 139 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 198

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 199 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 252

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 253 ----------------------------------------NTLRQTFENQVNRILNDARD 272

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFG 362
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFG
Sbjct: 273 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFG 323



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 37   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 79



 Score = 45.4 bits (106), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFG 1028
            +QVIACVGQQNVEGKRIPFG
Sbjct: 304  SQVIACVGQQNVEGKRIPFG 323


>gi|170652121|gb|ACB21837.1| RNA polymerase II [Melipona scutellaris]
          Length = 247

 Score =  468 bits (1203), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/292 (78%), Positives = 240/292 (82%), Gaps = 46/292 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 2   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 61

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 62  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 121

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 122 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 175

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 176 ----------------------------------------NTLRQTFENQVNRILNDARD 195

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGF 363
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGF
Sbjct: 196 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGF 247



 Score = 48.1 bits (113), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 20/21 (95%), Positives = 21/21 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGF 1029
            +QVIACVGQQNVEGKRIPFGF
Sbjct: 227  SQVIACVGQQNVEGKRIPFGF 247


>gi|357527839|gb|AET80207.1| RNA polymerase II large subunit [Allorhogas sp. ALW-2011]
          Length = 314

 Score =  468 bits (1203), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/291 (78%), Positives = 239/291 (82%), Gaps = 46/291 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 70  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 129

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 130 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 189

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 190 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 243

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 244 ----------------------------------------NTLRQTFENQVNRILNDARD 263

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFG 362
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFG
Sbjct: 264 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFG 314



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 28   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 70



 Score = 45.4 bits (106), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFG 1028
            +QVIACVGQQNVEGKRIPFG
Sbjct: 295  SQVIACVGQQNVEGKRIPFG 314


>gi|357527939|gb|AET80257.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527961|gb|AET80268.1| RNA polymerase II large subunit [Heterospilus sp. ST34]
 gi|357527969|gb|AET80272.1| RNA polymerase II large subunit [Heterospilus sp. ST54B]
          Length = 324

 Score =  467 bits (1202), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/291 (78%), Positives = 239/291 (82%), Gaps = 46/291 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 80  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 139

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 140 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 199

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 200 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 253

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 254 ----------------------------------------NTLRQTFENQVNRILNDARD 273

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFG 362
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFG
Sbjct: 274 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFG 324



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 38   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 80



 Score = 45.4 bits (106), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFG 1028
            +QVIACVGQQNVEGKRIPFG
Sbjct: 305  SQVIACVGQQNVEGKRIPFG 324


>gi|316997001|dbj|BAJ52628.1| RNA polymerase II largest subunit [Stephanoeca diplocostata]
          Length = 999

 Score =  467 bits (1202), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/450 (52%), Positives = 303/450 (67%), Gaps = 54/450 (12%)

Query: 37  MDPKFARPDWMLVTVLPVPPLSVRPAVVM--HGSARNQEQMMNILMFLPIWDGKMPQPCI 94
           + P+  RP      V+ +   ++R A +M    +  +++Q+M++LMF P WDG++P PCI
Sbjct: 25  LTPQANRP------VMGIVQDTLRAARMMSKRDTFMDRQQVMHLLMFYPEWDGRIPCPCI 78

Query: 95  LKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGI 154
           LKPK LWTGKQ+ SL+I   VN+ + HS H  DED+   +WI   DT+V++  G LL G+
Sbjct: 79  LKPKELWTGKQLLSLVIDEKVNLDQKHSAHNRDEDNSDNRWIPYHDTRVLIRGGVLLSGL 138

Query: 155 LCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTY 214
           +CK +LG  SGSL+HI  LE G++V    YGN+QT++NNWL        +G+        
Sbjct: 139 ICKATLGAKSGSLMHITRLECGYQVAKNLYGNLQTLINNWL--------VGN-------- 182

Query: 215 LEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDV 274
                                         G SIGIGDTIAD +T+ EIQ  + KA ++V
Sbjct: 183 ------------------------------GASIGIGDTIADDETFAEIQELLDKASKEV 212

Query: 275 IEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAG 334
             +I+KA+   LE TPGNT+RQTFENQVNR+LN AR  TG SA+ SL+EYNN K M  +G
Sbjct: 213 NRIIRKAYRGMLEATPGNTIRQTFENQVNRVLNKARSDTGQSAETSLSEYNNFKCMSRSG 272

Query: 335 SKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 394
           SKG  +NISQVIACVGQQNVEGKRI FGF+ R+LPH+IKDDYGP+S+GFV NSYL GLTP
Sbjct: 273 SKGGTLNISQVIACVGQQNVEGKRIKFGFQYRSLPHYIKDDYGPDSKGFVFNSYLRGLTP 332

Query: 395 SEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGE 454
           +E FFHAMGGREGLIDTAVKTAETGYIQRRLIK+ME + + YD +VRNS G+L QL YGE
Sbjct: 333 TELFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMEGLTLRYDGSVRNSNGELCQLLYGE 392

Query: 455 DGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           DG+  E +E Q ++T+  S   FE ++RFD
Sbjct: 393 DGMAAEWLEFQNLNTLKQSDADFEKQFRFD 422



 Score =  360 bits (923), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 216/492 (43%), Positives = 286/492 (58%), Gaps = 57/492 (11%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V G D LS+ A  NAT+    L+R+ L TK +    RLS EAF+W+VGE+E  F QAQ  
Sbjct: 521  VKGSDPLSQDAQFNATIFMTSLIRAHLSTKQLMTKSRLSHEAFKWIVGEVEASFMQAQSN 580

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 581  PGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPR--LKEIINVSKQPKT---- 634

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVL--VFLFQVTANTAIYYDPDPQN 1108
              S    L P           E       K  E  N L    L Q+T +T I+YDPDP+ 
Sbjct: 635  -PSLTVKLEP-----------EYASTENTKYVEVFNALEHTTLKQITKSTEIHYDPDPRT 682

Query: 1109 TVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDL 1168
            T I ED + V VY+ + + D   +SPW+LRIELD ++M  K + M+ ++EK+N  F  DL
Sbjct: 683  TTIEEDVDMVQVYHTLEEDDFDNLSPWMLRIELDFEKMNPKGIKMDVLAEKVNESFKRDL 742

Query: 1169 NCIFNDDNAE-----KLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTL 1223
             CI +DDN        LV+RIR+          +E A D+ ED   L+ IE N+LS+M+L
Sbjct: 743  QCIVSDDNDFDEDEDHLVMRIRLRTQGK-----DESASDEAEDHELLQQIEHNLLSEMSL 797

Query: 1224 QGIEAIGKVYMHLPQTD--SKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVR 1281
             GI+ I +VY+  P+ D  +K RI I E G+F  I +  LETDG+ LM  + ER VD VR
Sbjct: 798  SGIQDISRVYIVTPKEDEKAKHRIFINEDGKFDTINEVHLETDGSDLMATMRERGVDCVR 857

Query: 1282 TFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 1341
            T  NDICEIF  LGIEAVRKS++ EM+ V+ F G YVN RHL+LLCD+MT++G+LMAITR
Sbjct: 858  TTCNDICEIFYCLGIEAVRKSIDTEMSAVISFGGSYVNQRHLSLLCDIMTSRGYLMAITR 917

Query: 1342 HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1401
            HGINRQ+TGALMRCSFEETVD+LM+AAAHAE D + GVS N+++G L   GTG F LL +
Sbjct: 918  HGINRQNTGALMRCSFEETVDILMEAAAHAENDRLEGVSGNLMVGNLAPCGTGTFGLLFE 977

Query: 1402 ---AEKCKDGIE 1410
               A+ C  G +
Sbjct: 978  PGHAQGCHRGAQ 989



 Score =  157 bits (396), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 75/127 (59%), Positives = 98/127 (77%), Gaps = 6/127 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I + L   +VRKS++ EM+ V+ F G YVN RHL+LLCD+MT++G+LMAITRHGINR
Sbjct: 863 ICEIFYCLGIEAVRKSIDTEMSAVISFGGSYVNQRHLSLLCDIMTSRGYLMAITRHGINR 922

Query: 830 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD---AE 886
           Q+TGALMRCSFEETVD+LM+AAAHAE D + GVS N+++G L   GTG F LL +   A+
Sbjct: 923 QNTGALMRCSFEETVDILMEAAAHAENDRLEGVSGNLMVGNLAPCGTGTFGLLFEPGHAQ 982

Query: 887 KCKDGIE 893
            C  G +
Sbjct: 983 GCHRGAQ 989



 Score =  147 bits (370), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 80/101 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRI FGF+ R+LPH+IKDDYGP+S+GFV NSYL GLTP+E FFHAM
Sbjct: 281  SQVIACVGQQNVEGKRIKFGFQYRSLPHYIKDDYGPDSKGFVFNSYLRGLTPTELFFHAM 340

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            GGREGLIDTAVKTAET  +   L +      + YD   +N+
Sbjct: 341  GGREGLIDTAVKTAETGYIQRRLIKSMEGLTLRYDGSVRNS 381



 Score =  126 bits (316), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 76/104 (73%), Gaps = 4/104 (3%)

Query: 493 RNVSSLRRVVNSKPLLIGCWKLTSVEK----EMNTVLQFYGLYVNYRHLALLCDVMTAKG 548
           R V  +R   N    +  C  + +V K    EM+ V+ F G YVN RHL+LLCD+MT++G
Sbjct: 851 RGVDCVRTTCNDICEIFYCLGIEAVRKSIDTEMSAVISFGGSYVNQRHLSLLCDIMTSRG 910

Query: 549 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 592
           +LMAITRHGINRQ+TGALMRCSFEETVD+LM+AAAHAE D + G
Sbjct: 911 YLMAITRHGINRQNTGALMRCSFEETVDILMEAAAHAENDRLEG 954



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 87/170 (51%), Gaps = 36/170 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK+ME + + YD +VRNS G+L QL YGEDG+  E +E Q ++T+  S   FE
Sbjct: 357 GYIQRRLIKSMEGLTLRYDGSVRNSNGELCQLLYGEDGMAAEWLEFQNLNTLKQSDADFE 416

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            ++RFD  NE ++R+   +D+  ++  +  V  E                          
Sbjct: 417 KQFRFDL-NEYEMRKYVLDDIAEKVSTNPSVAHE-------------------------- 449

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                    L +E+E+L  DR+ LR +   G+  VV+P NL  +I   Q+
Sbjct: 450 ---------LAEEFEQLKRDRQLLRILRPDGKDQVVMPLNLPRLILNAQK 490



 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 55/83 (66%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L ++T +T I+YDPDP+ T I ED + V VY+ + + D   +SPW+LRIELD ++M  K 
Sbjct: 665  LKQITKSTEIHYDPDPRTTTIEEDVDMVQVYHTLEEDDFDNLSPWMLRIELDFEKMNPKG 724

Query: 1589 LTMEAISEKINAGFGDDLNTPLS 1611
            + M+ ++EK+N  F  DL   +S
Sbjct: 725  IKMDVLAEKVNESFKRDLQCIVS 747



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 24/111 (21%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +E +    R I+TPQ NRPVMGIVQDTL A R M+KRD F+D+                 
Sbjct: 14   IEEMMKVERNILTPQANRPVMGIVQDTLRAARMMSKRDTFMDR----------------- 56

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKIN 1599
                Q+ +++    P++D     P +L+    ++  T K+L    I EK+N
Sbjct: 57   ----QQVMHLLMFYPEWDGRIPCPCILK---PKELWTGKQLLSLVIDEKVN 100


>gi|170652107|gb|ACB21830.1| RNA polymerase II [Melipona lateralis]
          Length = 245

 Score =  467 bits (1202), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/291 (78%), Positives = 239/291 (82%), Gaps = 46/291 (15%)

Query: 76  MNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQW 135
           MNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+W
Sbjct: 1   MNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKW 60

Query: 136 ISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWL 195
           ISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWL
Sbjct: 61  ISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWL 120

Query: 196 LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIA 255
           LLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG          
Sbjct: 121 LLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG---------- 170

Query: 256 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG 315
                                               NTLRQTFENQVNRILNDARDKTGG
Sbjct: 171 ------------------------------------NTLRQTFENQVNRILNDARDKTGG 194

Query: 316 SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           SAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 195 SAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 245



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 222  SQVIACVGQQNVEGKRIPFGFRKR 245


>gi|170652145|gb|ACB21849.1| RNA polymerase II [Melipona crinita]
          Length = 245

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/291 (78%), Positives = 239/291 (82%), Gaps = 46/291 (15%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           MMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+
Sbjct: 1   MMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYK 60

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNW
Sbjct: 61  WISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNW 120

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG         
Sbjct: 121 LLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG--------- 171

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                NTLRQTFENQVNRILNDARDKTG
Sbjct: 172 -------------------------------------NTLRQTFENQVNRILNDARDKTG 194

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 365
           GSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRK
Sbjct: 195 GSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 245



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/23 (95%), Positives = 23/23 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRK 1031
            +QVIACVGQQNVEGKRIPFGFRK
Sbjct: 223  SQVIACVGQQNVEGKRIPFGFRK 245


>gi|357527851|gb|AET80213.1| RNA polymerase II large subunit [Caenophanes sp. ALW-2011]
          Length = 324

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/291 (78%), Positives = 238/291 (81%), Gaps = 46/291 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 80  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDG 139

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 140 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 199

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTY EIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 200 NNWLLLEGHSIGIGDTIADPQTYSEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 253

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 254 ----------------------------------------NTLRQTFENQVNRILNDARD 273

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFG 362
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFG
Sbjct: 274 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFG 324



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 38   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 80



 Score = 45.4 bits (106), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFG 1028
            +QVIACVGQQNVEGKRIPFG
Sbjct: 305  SQVIACVGQQNVEGKRIPFG 324


>gi|170652127|gb|ACB21840.1| RNA polymerase II [Melipona quinquefasciata]
          Length = 246

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/292 (78%), Positives = 239/292 (81%), Gaps = 46/292 (15%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           EQ MNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GP
Sbjct: 1   EQXMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGP 60

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
           Y+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+N
Sbjct: 61  YKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVIN 120

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
           NWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG       
Sbjct: 121 NWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------- 173

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
                                                  NTLRQTFENQVNRILNDARDK
Sbjct: 174 ---------------------------------------NTLRQTFENQVNRILNDARDK 194

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           TGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 195 TGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 246



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 225  SQVIACVGQQNVEGKRIPFGFR 246


>gi|194460391|gb|ACF71870.1| RNA polymerase II [Euglossa sp. EU33]
          Length = 247

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/293 (77%), Positives = 238/293 (81%), Gaps = 46/293 (15%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNV M RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVXMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGI
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYG 377
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR  PH IKDDYG
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRXXPHXIKDDYG 247



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/35 (88%), Positives = 32/35 (91%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYG 1043
            +QVIACVGQQNVEGKRIPFGFRKR  PH IKDDYG
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRXXPHXIKDDYG 247


>gi|157841488|gb|ABV83210.1| RNA polymerase 2 [Pelodera punctata]
          Length = 605

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/421 (57%), Positives = 300/421 (71%), Gaps = 52/421 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V GED++SKQA  NATLL   L+RSTLC+K +AE YRL+ E FEWL+GEIE+RF QA   
Sbjct: 209  VCGEDRISKQAQYNATLLMNILIRSTLCSKQMAEKYRLNEEGFEWLLGEIEHRFNQAVAQ 268

Query: 1010 --QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
              +++  +  Q++ G+                    P ++  +   + AG++        
Sbjct: 269  PGEMVGALAAQSL-GE--------------------PATQMTLNTFHFAGVSAKNVTLGV 307

Query: 1068 MGGREGLIDTAVKTAETVNVLVFL-----------------------FQVTANTAIYYDP 1104
               +E  I    K+  T ++ VFL                        +VT+NTAIYYDP
Sbjct: 308  PRLKE--IINVSKSPRTPSLTVFLQGAAAKDAEKAKDVLCKLEHTTLRKVTSNTAIYYDP 365

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DP+NT I ED+E+V+++YEMPDFDP+R SPWLLRIELDRKRMTDKKLTMEAI+E+I+ GF
Sbjct: 366  DPKNTCIEEDEEWVSIFYEMPDFDPSRCSPWLLRIELDRKRMTDKKLTMEAIAERIHQGF 425

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLN I+ DDNA+KLV R+RI N D  K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ
Sbjct: 426  GDDLNVIYTDDNADKLVFRLRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQ 484

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIEAI KVYMH P TD KKR++IT  G FKAI +WLLETDGT+L++VL+E+ VDPVRT S
Sbjct: 485  GIEAISKVYMHKPTTDDKKRMVITPEGGFKAIPEWLLETDGTALLRVLAEQSVDPVRTSS 544

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIF+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 545  NDICEIFEVLGIEAVRKAIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 604

Query: 1345 N 1345
            N
Sbjct: 605  N 605



 Score =  185 bits (470), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 98/148 (66%), Positives = 112/148 (75%), Gaps = 10/148 (6%)

Query: 376 YGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVH 435
           YGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV+
Sbjct: 1   YGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVN 60

Query: 436 YDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLRNV 495
           YD TVRNS+ QLIQLRYGEDGL G  VE Q + T+ L++  FE +++ + S+ER      
Sbjct: 61  YDGTVRNSLAQLIQLRYGEDGLDGMWVESQFMPTMKLTNAAFEKQFKLELSDER------ 114

Query: 496 SSLRRVVNS---KPLLIGCWKLTSVEKE 520
            SLRR+      + LL     L  VE E
Sbjct: 115 -SLRRIYTEDVVRDLLGSSNALQEVEAE 141



 Score =  184 bits (467), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 109/152 (71%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT+NTAIYYDPDP+NT I ED+E+V+++YEMPDFDP+R SPWLLRIELDRKRMTDKK
Sbjct: 352  LRKVTSNTAIYYDPDPKNTCIEEDEEWVSIFYEMPDFDPSRCSPWLLRIELDRKRMTDKK 411

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L                            TMEAI+E+I+ GFGDDLN I+ DDNA+KLV 
Sbjct: 412  L----------------------------TMEAIAERIHQGFGDDLNVIYTDDNADKLVF 443

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N D  K + EE +VDKMEDD+FLRCIE
Sbjct: 444  RLRITNQDADKGETEE-SVDKMEDDVFLRCIE 474



 Score =  147 bits (371), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 104/170 (61%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ QLIQLRYGEDGL G  VE Q + T+ L++  FE
Sbjct: 44  GYIQRRLIKAMESVMVNYDGTVRNSLAQLIQLRYGEDGLDGMWVESQFMPTMKLTNAAFE 103

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++ + S+ER LRRI+ EDV+R+L+GS + + E+E                        
Sbjct: 104 KQFKLELSDERSLRRIYTEDVVRDLLGSSNALQEVE------------------------ 139

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW++L EDR  LR+IF  G+  VVLPCNL  +I+  Q+
Sbjct: 140 -----------AEWQQLEEDRRLLRKIFPKGDHKVVLPCNLQRLIWNAQK 178



 Score = 98.6 bits (244), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 1042 YGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIY 1101
            YGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET  +   L +   +  + 
Sbjct: 1    YGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVN 60

Query: 1102 YDPDPQNTV 1110
            YD   +N++
Sbjct: 61   YDGTVRNSL 69



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 50/59 (84%), Gaps = 3/59 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGIN
Sbjct: 547 ICEIFEVLGIEAVRKAIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGIN 605



 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 40/44 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 559
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGIN
Sbjct: 562 AIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGIN 605


>gi|357527913|gb|AET80244.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
          Length = 323

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/291 (78%), Positives = 239/291 (82%), Gaps = 46/291 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 79  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 138

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGH+VCGRFYGNIQTV+
Sbjct: 139 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHDVCGRFYGNIQTVI 198

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 199 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 252

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 253 ----------------------------------------NTLRQTFENQVNRILNDARD 272

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFG 362
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFG
Sbjct: 273 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFG 323



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 37   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 79



 Score = 45.4 bits (106), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFG 1028
            +QVIACVGQQNVEGKRIPFG
Sbjct: 304  SQVIACVGQQNVEGKRIPFG 323


>gi|357527835|gb|AET80205.1| RNA polymerase II large subunit [Allorhogas sp. ALW-2011]
          Length = 324

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/291 (78%), Positives = 239/291 (82%), Gaps = 46/291 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 80  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 139

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGH+VCGRFYGNIQTV+
Sbjct: 140 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHDVCGRFYGNIQTVI 199

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 200 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 253

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 254 ----------------------------------------NTLRQTFENQVNRILNDARD 273

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFG 362
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFG
Sbjct: 274 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFG 324



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 38   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 80



 Score = 45.4 bits (106), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFG 1028
            +QVIACVGQQNVEGKRIPFG
Sbjct: 305  SQVIACVGQQNVEGKRIPFG 324


>gi|357527973|gb|AET80274.1| RNA polymerase II large subunit [Heterospilus sp. ST64A]
          Length = 319

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/291 (78%), Positives = 238/291 (81%), Gaps = 46/291 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 75  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 134

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 135 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 194

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 195 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 248

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 249 ----------------------------------------NTLRQTFENQVNRILNDARD 268

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFG 362
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACV QQNVEGKRIPFG
Sbjct: 269 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVXQQNVEGKRIPFG 319



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 33   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 75



 Score = 42.7 bits (99), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/20 (90%), Positives = 19/20 (95%)

Query: 1009 AQVIACVGQQNVEGKRIPFG 1028
            +QVIACV QQNVEGKRIPFG
Sbjct: 300  SQVIACVXQQNVEGKRIPFG 319


>gi|170652079|gb|ACB21816.1| RNA polymerase II [Melipona grandis]
          Length = 253

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/295 (77%), Positives = 240/295 (81%), Gaps = 46/295 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +E MM ILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 5   KEPMMXILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 64

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 65  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 124

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 125 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 178

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 179 ----------------------------------------NTLRQTFENQVNRILNDARD 198

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQ NVEGKRIPFGFRKR
Sbjct: 199 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQPNVEGKRIPFGFRKR 253



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/24 (91%), Positives = 23/24 (95%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQ NVEGKRIPFGFRKR
Sbjct: 230  SQVIACVGQPNVEGKRIPFGFRKR 253


>gi|170652097|gb|ACB21825.1| RNA polymerase II [Melipona micheneri]
          Length = 244

 Score =  465 bits (1196), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/290 (78%), Positives = 238/290 (82%), Gaps = 46/290 (15%)

Query: 77  NILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWI 136
           NILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WI
Sbjct: 1   NILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWI 60

Query: 137 SPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLL 196
           SPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLL
Sbjct: 61  SPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLL 120

Query: 197 LEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIAD 256
           LEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG           
Sbjct: 121 LEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG----------- 169

Query: 257 PQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGS 316
                                              NTLRQTFENQVNRILNDARDKTGGS
Sbjct: 170 -----------------------------------NTLRQTFENQVNRILNDARDKTGGS 194

Query: 317 AKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           AKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 195 AKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 244



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 221  SQVIACVGQQNVEGKRIPFGFRKR 244


>gi|309755546|gb|ADO86607.1| RNA polymerase II [Agmina parie]
          Length = 246

 Score =  465 bits (1196), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/292 (78%), Positives = 239/292 (81%), Gaps = 46/292 (15%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 394
           SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP
Sbjct: 195 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 246



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/52 (98%), Positives = 52/52 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 1060
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP
Sbjct: 195  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 246


>gi|262303419|gb|ACY44302.1| RNA polymerase largest subunit [Armillifer armillatus]
          Length = 654

 Score =  465 bits (1196), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/299 (74%), Positives = 244/299 (81%), Gaps = 46/299 (15%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++ ++MN+LM+LP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED 
Sbjct: 16  DKHEIMNLLMYLPSWDGKMPQPCILKPKPLWTGKQLFSLIIPGNVNMIRTHSTHPDDEDD 75

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLH+ +LE+GHEVCG+FYGNIQTV
Sbjct: 76  GPYKWISPGDTKVLVEHGDLIMGILCKKTLGTSAGSLLHVVWLEMGHEVCGQFYGNIQTV 135

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN+WLL+EGHSIGIGDTIADPQTYL+IQ  IKKAKEDVIEVIQKAHN +LEPTPG     
Sbjct: 136 VNHWLLIEGHSIGIGDTIADPQTYLDIQNTIKKAKEDVIEVIQKAHNDELEPTPG----- 190

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
                                                    NTLRQTFENQVNRILNDAR
Sbjct: 191 -----------------------------------------NTLRQTFENQVNRILNDAR 209

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           DKTGGSAKKSLTEYNNLK+MVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 210 DKTGGSAKKSLTEYNNLKSMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 268



 Score =  263 bits (671), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 145/227 (63%), Positives = 155/227 (68%), Gaps = 32/227 (14%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V GED LSKQANENATLLFQCLVRSTLCTK VAE +RLSSEAFEWL+GEIE RFQQAQV 
Sbjct: 454  VPGEDPLSKQANENATLLFQCLVRSTLCTKQVAEEFRLSSEAFEWLIGEIETRFQQAQVQ 513

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
               G   V  K +  G  +  L   I     P++             PS   F       
Sbjct: 514  PXAG---VSSKNVTLGVPR--LKEIINISKRPKA-------------PSLTVF------- 548

Query: 1073 GLIDTAVKTAETVNVLV------FLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD 1126
             L   A + AE    ++       L +VTANTAIYYDPDPQNTVI EDQEFVNVYYEMPD
Sbjct: 549  -LTGVAARDAEKAKSVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPD 607

Query: 1127 FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFN 1173
            FDPTRISPWLLRIELDRKRMTDKKLTME ISEKINAGFGDDLNCIFN
Sbjct: 608  FDPTRISPWLLRIELDRKRMTDKKLTMEQISEKINAGFGDDLNCIFN 654



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/79 (96%), Positives = 76/79 (96%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 572  LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 631

Query: 1589 LTMEAISEKINAGFGDDLN 1607
            LTME ISEKINAGFGDDLN
Sbjct: 632  LTMEQISEKINAGFGDDLN 650



 Score =  150 bits (380), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/158 (50%), Positives = 96/158 (60%), Gaps = 35/158 (22%)

Query: 604 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERQ 663
           SVMV+YD TVRN+VGQLIQLRYGEDGL  E +E Q + TV  S+K FE  ++FD +NER 
Sbjct: 307 SVMVNYDGTVRNAVGQLIQLRYGEDGLAAEWLEFQTLPTVKPSNKAFEKNFKFDATNERA 366

Query: 664 LRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEK 723
           LRRIF EDV+RE+MGSG+VISELEKE                                  
Sbjct: 367 LRRIFTEDVVREIMGSGEVISELEKE---------------------------------- 392

Query: 724 EWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
            WE+L  DR+ LR +F +GES V LPCNL   IF + R
Sbjct: 393 -WEQLNTDRDVLRRVFPTGESKVALPCNLQRXIFHINR 429



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 51/71 (71%), Gaps = 7/71 (9%)

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMV+YD TVRN+VGQLIQLRYGEDGL  E +E Q + TV  S+K FE  ++FD +NER 
Sbjct: 307 SVMVNYDGTVRNAVGQLIQLRYGEDGLAAEWLEFQTLPTVKPSNKAFEKNFKFDATNER- 365

Query: 491 TLRNVSSLRRV 501
                 +LRR+
Sbjct: 366 ------ALRRI 370



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 27/27 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            +QVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLP 268


>gi|157841394|gb|ABV83151.1| RNA polymerase 2 [Rhabditis sp. PS1130]
          Length = 619

 Score =  465 bits (1196), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 245/402 (60%), Positives = 289/402 (71%), Gaps = 17/402 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
            V+GED++SKQA  NATLL   LVRSTLC+K +A  Y+L+SEAFEWL+GE+E RF+QA  Q
Sbjct: 224  VSGEDKISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQ 283

Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-----VENSYLAGLTPSEFFF 1065
                VG    +    P         HF        + G      + N      TPS   F
Sbjct: 284  PGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVF 343

Query: 1066 ---HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
                A    E   D   K   T      L +VT+NTAIYYDPD +NT I ED+E+V+++Y
Sbjct: 344  LQGAAAKDAERAKDVLCKLEHTT-----LRKVTSNTAIYYDPDVKNTCIEEDEEWVSIFY 398

Query: 1123 EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1182
            EMPDFDPTR SPWLLR+ELDRKRMTDKKLTME I++KI+ GFGDDLN I+ DDNA+KLV 
Sbjct: 399  EMPDFDPTRASPWLLRLELDRKRMTDKKLTMEQIADKIHQGFGDDLNVIYTDDNADKLVF 458

Query: 1183 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1242
            R+RI N DD     EE+ +DKMEDD+FLRCIE+NMLSD+TLQGI +I KVYMH PQTD K
Sbjct: 459  RLRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGITSIQKVYMHKPQTDDK 516

Query: 1243 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1302
            KR+IIT  G FK+IADWLLETDGT+L+KVLSE+ +DPVRT SNDICEIF+VLGIEAVRKS
Sbjct: 517  KRVIITPEGGFKSIADWLLETDGTALLKVLSEQHIDPVRTTSNDICEIFEVLGIEAVRKS 576

Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            +E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMA T HGI
Sbjct: 577  IEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAXTXHGI 618



 Score =  215 bits (548), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/133 (77%), Positives = 116/133 (87%), Gaps = 1/133 (0%)

Query: 361 FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGY 420
           FGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREG+IDTAVKTAETGY
Sbjct: 1   FGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGIIDTAVKTAETGY 60

Query: 421 IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDK 480
           IQRRLIKAMESVMV+YD TVRNS+ Q+IQLRYGEDGL G  VE+Q + T+  +H  FE  
Sbjct: 61  IQRRLIKAMESVMVNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQTLPTMKPTHALFEQD 120

Query: 481 YRFDPSNERPTLR 493
           ++ D S+ER TLR
Sbjct: 121 FKLDLSDER-TLR 132



 Score =  178 bits (452), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/152 (58%), Positives = 106/152 (69%), Gaps = 30/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT+NTAIYYDPD +NT I ED+E+V+++YEMPDFDPTR SPWLLR+ELDRKRMTDKK
Sbjct: 367  LRKVTSNTAIYYDPDVKNTCIEEDEEWVSIFYEMPDFDPTRASPWLLRLELDRKRMTDKK 426

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I++KI+ GFG                            DDLN I+ DDNA+KLV 
Sbjct: 427  LTMEQIADKIHQGFG----------------------------DDLNVIYTDDNADKLVF 458

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N DD     EE+ +DKMEDD+FLRCIE
Sbjct: 459  RLRITNQDDKGA--EEEQIDKMEDDVFLRCIE 488



 Score =  146 bits (369), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 102/170 (60%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q+IQLRYGEDGL G  VE+Q + T+  +H  FE
Sbjct: 59  GYIQRRLIKAMESVMVNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQTLPTMKPTHALFE 118

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             ++ D S+ER LR+ + EDV+REL GS + I E+E                        
Sbjct: 119 QDFKLDLSDERTLRKYYTEDVIRELQGSSEAIKEVE------------------------ 154

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +EW +L EDR  LR+IF SG + +VLPCNL  +++  Q+
Sbjct: 155 -----------QEWGQLEEDRRLLRKIFPSGNAKIVLPCNLQRLLWNAQK 193



 Score =  128 bits (321), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/84 (69%), Positives = 68/84 (80%)

Query: 1027 FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVN 1086
            FGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREG+IDTAVKTAET  
Sbjct: 1    FGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGIIDTAVKTAETGY 60

Query: 1087 VLVFLFQVTANTAIYYDPDPQNTV 1110
            +   L +   +  + YD   +N++
Sbjct: 61   IQRRLIKAMESVMVNYDGTVRNSL 84



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 47/58 (81%), Gaps = 3/58 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 827
           +C+I  VL   +VRKS+E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMA T HGI
Sbjct: 561 ICEIFEVLGIEAVRKSIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAXTXHGI 618



 Score = 77.4 bits (189), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 37/43 (86%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 558
           S+E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMA T HGI
Sbjct: 576 SIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAXTXHGI 618


>gi|157841486|gb|ABV83209.1| RNA polymerase 2 [Pelodera strongyloides dermatitica]
          Length = 633

 Score =  465 bits (1196), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 245/406 (60%), Positives = 294/406 (72%), Gaps = 16/406 (3%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
            V G+D++SKQA  NATLL   L+RSTLC+K +AE +RL+ E FEWL+GEIE+RF QA  Q
Sbjct: 233  VCGDDRISKQAQYNATLLMNILIRSTLCSKQMAEKHRLNEEGFEWLLGEIEHRFNQAIAQ 292

Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-----VENSYLAGLTPSEFFF 1065
                VG    +    P         HF        + G      + N   +  TPS   F
Sbjct: 293  PGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVF 352

Query: 1066 HAMGGR---EGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
               G     E   D   K   T      L +VT+NTAIYYDPDP+NT I ED+E+V+++Y
Sbjct: 353  LQGGAAKDAEKAKDVLCKLEHTT-----LRKVTSNTAIYYDPDPKNTCIEEDEEWVSIFY 407

Query: 1123 EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1182
            EMPDFDP+R SPWLLRIELDRKRMTDKKLTMEAI+E+I+ GFGDDLN I+ DDNA+KLV 
Sbjct: 408  EMPDFDPSRCSPWLLRIELDRKRMTDKKLTMEAIAERIHQGFGDDLNVIYTDDNADKLVF 467

Query: 1183 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1242
            R+RI N D  K + EE +VDKMEDD+FLRCIE+NMLSD+TLQGIEAI KVYMH P TD K
Sbjct: 468  RLRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGIEAITKVYMHKPTTDDK 526

Query: 1243 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1302
            KR++IT  G FKAI +WLLETDGT+L++VL+E+ VDPVRT SNDICEIF+VLGIEAVRK 
Sbjct: 527  KRMVITPEGGFKAIPEWLLETDGTALLRVLAEQSVDPVRTSSNDICEIFEVLGIEAVRKG 586

Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQD 1348
            +E+EM+ V+ F G YVNYRHLALLCDVMT+KGHLMAITR GINRQ+
Sbjct: 587  IEREMHQVISFDGSYVNYRHLALLCDVMTSKGHLMAITRPGINRQE 632



 Score =  233 bits (593), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 119/171 (69%), Positives = 135/171 (78%), Gaps = 10/171 (5%)

Query: 353 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 412
           NVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 2   NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 61

Query: 413 VKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVAL 472
           VKTAETGYIQRRLIKAMESVMV+YD TVRN++ QLIQLRYGEDGL G  VE+Q + T+ L
Sbjct: 62  VKTAETGYIQRRLIKAMESVMVNYDGTVRNALAQLIQLRYGEDGLDGMWVENQFMPTMKL 121

Query: 473 SHKKFEDKYRFDPSNERPTLRNVSSLRRVVNS---KPLLIGCWKLTSVEKE 520
           ++  FE +++ + S+ER       SLRR+      + LL     L  VE E
Sbjct: 122 TNAAFEKQFKLELSDER-------SLRRIYTEDVVRDLLGSSNALQEVEAE 165



 Score =  183 bits (464), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 109/152 (71%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT+NTAIYYDPDP+NT I ED+E+V+++YEMPDFDP+R SPWLLRIELDRKRMTDKK
Sbjct: 376  LRKVTSNTAIYYDPDPKNTCIEEDEEWVSIFYEMPDFDPSRCSPWLLRIELDRKRMTDKK 435

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L                            TMEAI+E+I+ GFGDDLN I+ DDNA+KLV 
Sbjct: 436  L----------------------------TMEAIAERIHQGFGDDLNVIYTDDNADKLVF 467

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N D  K + EE +VDKMEDD+FLRCIE
Sbjct: 468  RLRITNQDMDKGESEE-SVDKMEDDVFLRCIE 498



 Score =  146 bits (369), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 105/170 (61%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRN++ QLIQLRYGEDGL G  VE+Q + T+ L++  FE
Sbjct: 68  GYIQRRLIKAMESVMVNYDGTVRNALAQLIQLRYGEDGLDGMWVENQFMPTMKLTNAAFE 127

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++ + S+ER LRRI+ EDV+R+L+GS + + E+E                        
Sbjct: 128 KQFKLELSDERSLRRIYTEDVVRDLLGSSNALQEVE------------------------ 163

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW++L EDR  LR+IF  G+  VVLPCNL  +I+  Q+
Sbjct: 164 -----------AEWQQLEEDRRLLRKIFPKGDHKVVLPCNLQRLIWNAQK 202



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 75/92 (81%)

Query: 1019 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 1078
            NVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 2    NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 61

Query: 1079 VKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            VKTAET  +   L +   +  + YD   +N +
Sbjct: 62   VKTAETGYIQRRLIKAMESVMVNYDGTVRNAL 93



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 51/62 (82%), Gaps = 3/62 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK +E+EM+ V+ F G YVNYRHLALLCDVMT+KGHLMAITR GINR
Sbjct: 571 ICEIFEVLGIEAVRKGIEREMHQVISFDGSYVNYRHLALLCDVMTSKGHLMAITRPGINR 630

Query: 830 QD 831
           Q+
Sbjct: 631 QE 632



 Score = 79.7 bits (195), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/46 (76%), Positives = 41/46 (89%)

Query: 517 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQD 562
           +E+EM+ V+ F G YVNYRHLALLCDVMT+KGHLMAITR GINRQ+
Sbjct: 587 IEREMHQVISFDGSYVNYRHLALLCDVMTSKGHLMAITRPGINRQE 632


>gi|170652111|gb|ACB21832.1| RNA polymerase II [Melipona rufiventris flavolineata]
          Length = 250

 Score =  465 bits (1196), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/291 (78%), Positives = 239/291 (82%), Gaps = 46/291 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 6   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 65

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 66  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 125

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 126 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 179

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 180 ----------------------------------------NTLRQTFENQVNRILNDARD 199

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFG 362
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFG
Sbjct: 200 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFG 250



 Score = 45.1 bits (105), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFG 1028
            +QVIACVGQQNVEGKRIPFG
Sbjct: 231  SQVIACVGQQNVEGKRIPFG 250


>gi|1916663|gb|AAB51211.1| large subunit RNA polymerase II, partial [Mesorhabditis sp.]
          Length = 633

 Score =  465 bits (1196), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 245/412 (59%), Positives = 293/412 (71%), Gaps = 16/412 (3%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
            V+G+D++S+QA  NATLL   L+RSTLC+K +AE YRL+ E FEWL+GEIE+RFQQA  Q
Sbjct: 228  VSGDDRISQQAQYNATLLMNILLRSTLCSKQMAEKYRLNQEGFEWLLGEIEHRFQQAIAQ 287

Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-----VENSYLAGLTPSEFFF 1065
                VG    +    P         HF        + G      + N   +  TPS   F
Sbjct: 288  PGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVF 347

Query: 1066 HAMGGR---EGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
                 R   E   D   K   T      L +VTANTAIYYDPDP+NTVI ED+E+V ++Y
Sbjct: 348  LTGAARKDAEKAKDVLCKLEHTT-----LRKVTANTAIYYDPDPKNTVIEEDEEWVAMFY 402

Query: 1123 EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1182
            EMPDFDP+R SPWLLRIELDRKRM DKKL+MEAISE+I   FG+ LN I+ DDNA+ LV 
Sbjct: 403  EMPDFDPSRCSPWLLRIELDRKRMIDKKLSMEAISERIQQSFGETLNVIYTDDNADNLVF 462

Query: 1183 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1242
            RIRI+ +DD    D E+ VD+MEDD FLR +E NMLSD+TLQGIE I KVYMH P TD K
Sbjct: 463  RIRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPTTDDK 521

Query: 1243 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1302
            KRI+IT    FKAI +WLLETDGT+L++VLS+ +VDP+RT SNDICEIF+VLGIEAVRK+
Sbjct: 522  KRIVITPEAGFKAIPEWLLETDGTALLQVLSQPNVDPIRTTSNDICEIFEVLGIEAVRKA 581

Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1354
            +E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMR
Sbjct: 582  IEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMR 633



 Score =  224 bits (570), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 106/147 (72%), Positives = 122/147 (82%), Gaps = 7/147 (4%)

Query: 357 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 416
           KRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTA
Sbjct: 1   KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTA 60

Query: 417 ETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKK 476
           ETGYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE Q + T+ L H  
Sbjct: 61  ETGYIQRRLIKAMESVMVNYDGTVRNSIAQMVQLRYGEDGLDGTWVEGQVMATMKLPHSA 120

Query: 477 FEDKYRFDPSNERPTLRNVSSLRRVVN 503
           FE +++ D       L ++ +L++V N
Sbjct: 121 FEKQFKLD-------LSDIKALQKVYN 140



 Score =  168 bits (426), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/153 (56%), Positives = 103/153 (67%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+NTVI ED+E+V ++YEMPDFDP+R SPWLLRIELDRKRM DKK
Sbjct: 371  LRKVTANTAIYYDPDPKNTVIEEDEEWVAMFYEMPDFDPSRCSPWLLRIELDRKRMIDKK 430

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L+MEAISE+I                               FG+ LN I+ DDNA+ LV 
Sbjct: 431  LSMEAISERI----------------------------QQSFGETLNVIYTDDNADNLVF 462

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEE 1681
            RIRI+ +DD    D E+ VD+MEDD FLR +E+
Sbjct: 463  RIRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQ 494



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/155 (49%), Positives = 95/155 (61%), Gaps = 15/155 (9%)

Query: 1023 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 1082
            KRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTA
Sbjct: 1    KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTA 60

Query: 1083 ETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELD 1142
            ET  +   L +   +  + YD   +N++     + V + Y     D T    W     ++
Sbjct: 61   ETGYIQRRLIKAMESVMVNYDGTVRNSI----AQMVQLRYGEDGLDGT----W-----VE 107

Query: 1143 RKRMTDKKLTMEAISEKINAGFGD--DLNCIFNDD 1175
             + M   KL   A  ++      D   L  ++N+D
Sbjct: 108  GQVMATMKLPHSAFEKQFKLDLSDIKALQKVYNED 142



 Score =  124 bits (312), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/170 (42%), Positives = 99/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE Q + T+ L H  FE
Sbjct: 63  GYIQRRLIKAMESVMVNYDGTVRNSIAQMVQLRYGEDGLDGTWVEGQVMATMKLPHSAFE 122

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++ D S+ + L++++NED++R+L GS   + E E+E                      
Sbjct: 123 KQFKLDLSDIKALQKVYNEDIIRDLTGSTVALKEAEEEWE-------------------- 162

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                          +L +DR  LR+IF  G+  VVLPCNL  +I+  Q+
Sbjct: 163 ---------------RLEDDRRLLRKIFPKGDKKVVLPCNLQRLIWNAQK 197



 Score =  104 bits (260), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 58/68 (85%), Gaps = 3/68 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 566 ICEIFEVLGIEAVRKAIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 625

Query: 830 QDTGALMR 837
           Q+ GALMR
Sbjct: 626 QEVGALMR 633



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/53 (79%), Positives = 48/53 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 568
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMR
Sbjct: 581 AIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMR 633


>gi|170652129|gb|ACB21841.1| RNA polymerase II [Melipona mandacaia]
          Length = 245

 Score =  464 bits (1195), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/291 (78%), Positives = 238/291 (81%), Gaps = 46/291 (15%)

Query: 76  MNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQW 135
           M ILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+W
Sbjct: 1   MXILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKW 60

Query: 136 ISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWL 195
           ISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWL
Sbjct: 61  ISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWL 120

Query: 196 LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIA 255
           LLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG          
Sbjct: 121 LLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG---------- 170

Query: 256 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG 315
                                               NTLRQTFENQVNRILNDARDKTGG
Sbjct: 171 ------------------------------------NTLRQTFENQVNRILNDARDKTGG 194

Query: 316 SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           SAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 195 SAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 245



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 222  SQVIACVGQQNVEGKRIPFGFRKR 245


>gi|170652014|gb|ACB21784.1| RNA polymerase II [Nannotrigona sp. MP104]
          Length = 253

 Score =  464 bits (1195), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/293 (77%), Positives = 238/293 (81%), Gaps = 46/293 (15%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           E MMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GP
Sbjct: 7   EHMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGP 66

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
           Y+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+N
Sbjct: 67  YKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVIN 126

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
           NWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG       
Sbjct: 127 NWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------- 179

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
                                                  NTLRQTFENQVNRILNDARDK
Sbjct: 180 ---------------------------------------NTLRQTFENQVNRILNDARDK 200

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 365
           TGGSAKKSLTEYNNLK MVV+GSKG NINISQVIACVGQQNVEGKRIPFGFRK
Sbjct: 201 TGGSAKKSLTEYNNLKGMVVSGSKGCNINISQVIACVGQQNVEGKRIPFGFRK 253



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/23 (95%), Positives = 23/23 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRK 1031
            +QVIACVGQQNVEGKRIPFGFRK
Sbjct: 231  SQVIACVGQQNVEGKRIPFGFRK 253


>gi|170652125|gb|ACB21839.1| RNA polymerase II [Melipona triplaridis]
          Length = 245

 Score =  464 bits (1195), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/291 (78%), Positives = 238/291 (81%), Gaps = 46/291 (15%)

Query: 76  MNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQW 135
           MNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+W
Sbjct: 1   MNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKW 60

Query: 136 ISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWL 195
           ISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWL
Sbjct: 61  ISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWL 120

Query: 196 LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIA 255
           LLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG          
Sbjct: 121 LLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG---------- 170

Query: 256 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG 315
                                               NTLRQTFENQVN ILNDARDKTGG
Sbjct: 171 ------------------------------------NTLRQTFENQVNXILNDARDKTGG 194

Query: 316 SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           SAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 195 SAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 245



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 222  SQVIACVGQQNVEGKRIPFGFRKR 245


>gi|194460399|gb|ACF71874.1| RNA polymerase II [Eufriesea mariana]
          Length = 242

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/288 (78%), Positives = 238/288 (82%), Gaps = 46/288 (15%)

Query: 123 THPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGR 182
           THPD+E+ GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGR
Sbjct: 1   THPDEEEDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGR 60

Query: 183 FYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEP 242
           FYGNIQTV+NNWLLLEG                                           
Sbjct: 61  FYGNIQTVINNWLLLEG------------------------------------------- 77

Query: 243 TPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQV 302
              HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTFENQV
Sbjct: 78  ---HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQV 134

Query: 303 NRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFG 362
           NRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFG
Sbjct: 135 NRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFG 194

Query: 363 FRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 410
           FRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLID
Sbjct: 195 FRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 242



 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 175  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 234

Query: 1069 GGREGLID 1076
            GGREGLID
Sbjct: 235  GGREGLID 242


>gi|262303437|gb|ACY44311.1| RNA polymerase largest subunit [Daphnia magna]
          Length = 654

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/298 (74%), Positives = 240/298 (80%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMN+LMFLP WDGKMPQP ILKP+P+WTGKQ+F+LIIPGNVNM RTHSTHPDDED G
Sbjct: 17  KEQMMNLLMFLPTWDGKMPQPAILKPRPMWTGKQLFTLIIPGNVNMIRTHSTHPDDEDEG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VE+G L+MGILCKK+LG S+ SLLHI F+ELGHEVCGRFYGNIQTV+
Sbjct: 77  PYKWISPGDTKVMVENGELVMGILCKKTLGASAASLLHIIFMELGHEVCGRFYGNIQTVI 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EGHSIGIGDTIADPQTYL+IQ  IKKAKEDVIEVIQK+HN +LEPTPG      
Sbjct: 137 NNWLLYEGHSIGIGDTIADPQTYLDIQATIKKAKEDVIEVIQKSHNDELEPTPG------ 190

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 191 ----------------------------------------NTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTGGSAKKSLTEYNNLK+MVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 211 KTGGSAKKSLTEYNNLKSMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 268



 Score =  247 bits (631), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 140/227 (61%), Positives = 155/227 (68%), Gaps = 32/227 (14%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V GED+LS QAN+NATLLFQCL+RSTLC+K +AE YRLSSEAFEWL+GEIE RFQQAQ  
Sbjct: 454  VVGEDKLSVQANQNATLLFQCLIRSTLCSKRLAEEYRLSSEAFEWLIGEIETRFQQAQAQ 513

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
               G   V  K +  G  +  L   I     P++             PS   F       
Sbjct: 514  PXAG---VSSKNVTLGVPR--LKEIINISKNPKA-------------PSLTVF------- 548

Query: 1073 GLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD 1126
             L   A + AE   NVL       L +VTANTAIYYDPDPQNTVI EDQEFVNVYYEMPD
Sbjct: 549  -LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPD 607

Query: 1127 FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFN 1173
            FDPTRISPWLLRIELDRKRMTDK+LTME I+EK+NAGFGDDLNCIFN
Sbjct: 608  FDPTRISPWLLRIELDRKRMTDKRLTMEQIAEKVNAGFGDDLNCIFN 654



 Score =  160 bits (404), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 73/79 (92%), Positives = 76/79 (96%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDK+
Sbjct: 572  LRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKR 631

Query: 1589 LTMEAISEKINAGFGDDLN 1607
            LTME I+EK+NAGFGDDLN
Sbjct: 632  LTMEQIAEKVNAGFGDDLN 650



 Score =  159 bits (403), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 100/158 (63%), Gaps = 35/158 (22%)

Query: 604 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERQ 663
           SVMVHYD TVRNSVGQLIQLRYGEDGL  E+VE Q + TV LS+K FE K++FDPSNER 
Sbjct: 307 SVMVHYDGTVRNSVGQLIQLRYGEDGLSAESVEFQTMPTVKLSNKAFEKKFKFDPSNERY 366

Query: 664 LRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEK 723
           LRRIFNED+ REL  S +VI+E+E                                    
Sbjct: 367 LRRIFNEDITRELSSSAEVITEIE-----------------------------------H 391

Query: 724 EWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
           EWE+L +DREALR+IF +GE+ VVLPCNL   IF + +
Sbjct: 392 EWEQLDKDREALRQIFPTGENKVVLPCNLQRXIFHINK 429



 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/73 (67%), Positives = 55/73 (75%), Gaps = 7/73 (9%)

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMVHYD TVRNSVGQLIQLRYGEDGL  E+VE Q + TV LS+K FE K++FDPSNER 
Sbjct: 307 SVMVHYDGTVRNSVGQLIQLRYGEDGLSAESVEFQTMPTVKLSNKAFEKKFKFDPSNER- 365

Query: 491 TLRNVSSLRRVVN 503
                  LRR+ N
Sbjct: 366 ------YLRRIFN 372



 Score = 60.8 bits (146), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 27/27 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            +QVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLP 268


>gi|170652077|gb|ACB21815.1| RNA polymerase II [Melipona costaricaensis]
          Length = 244

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/289 (78%), Positives = 237/289 (82%), Gaps = 46/289 (15%)

Query: 76  MNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQW 135
           MNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+W
Sbjct: 1   MNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKW 60

Query: 136 ISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWL 195
           ISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWL
Sbjct: 61  ISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWL 120

Query: 196 LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIA 255
           LLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG          
Sbjct: 121 LLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG---------- 170

Query: 256 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG 315
                                               NTLRQTFENQVNRILNDARDKTGG
Sbjct: 171 ------------------------------------NTLRQTFENQVNRILNDARDKTGG 194

Query: 316 SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           SAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 195 SAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 243



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 222  SQVIACVGQQNVEGKRIPFGFR 243


>gi|170652042|gb|ACB21798.1| RNA polymerase II [Nogueirapis mirandula]
          Length = 243

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/289 (78%), Positives = 237/289 (82%), Gaps = 46/289 (15%)

Query: 76  MNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQW 135
           MNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+W
Sbjct: 1   MNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKW 60

Query: 136 ISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWL 195
           ISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWL
Sbjct: 61  ISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWL 120

Query: 196 LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIA 255
           LLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG          
Sbjct: 121 LLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG---------- 170

Query: 256 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG 315
                                               NTLRQTFENQVNRILNDARDKTGG
Sbjct: 171 ------------------------------------NTLRQTFENQVNRILNDARDKTGG 194

Query: 316 SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           SAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 195 SAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 243



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 222  SQVIACVGQQNVEGKRIPFGFR 243


>gi|170652133|gb|ACB21843.1| RNA polymerase II [Melipona bicolor bicolor]
          Length = 243

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/289 (78%), Positives = 237/289 (82%), Gaps = 46/289 (15%)

Query: 77  NILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWI 136
           NILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WI
Sbjct: 1   NILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWI 60

Query: 137 SPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLL 196
           SPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLL
Sbjct: 61  SPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLL 120

Query: 197 LEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIAD 256
           LEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG           
Sbjct: 121 LEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG----------- 169

Query: 257 PQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGS 316
                                              NTLRQTFENQVNRILNDARDKTGGS
Sbjct: 170 -----------------------------------NTLRQTFENQVNRILNDARDKTGGS 194

Query: 317 AKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 365
           AKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRK
Sbjct: 195 AKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 243



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/23 (95%), Positives = 23/23 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRK 1031
            +QVIACVGQQNVEGKRIPFGFRK
Sbjct: 221  SQVIACVGQQNVEGKRIPFGFRK 243


>gi|357527959|gb|AET80267.1| RNA polymerase II large subunit [Heterospilus sp. ST31]
          Length = 322

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/289 (78%), Positives = 237/289 (82%), Gaps = 46/289 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 80  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 139

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 140 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 199

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 200 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 253

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 254 ----------------------------------------NTLRQTFENQVNRILNDARD 273

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP 360
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP
Sbjct: 274 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIP 322



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 38   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 80


>gi|157841490|gb|ABV83211.1| RNA polymerase 2 [Pelodera teres]
          Length = 629

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/424 (56%), Positives = 302/424 (71%), Gaps = 52/424 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D++SKQA  NATLL   L+RSTLC+K ++E +RL+  AF+WL+GEIE+RFQQA   
Sbjct: 228  VMGDDRISKQAQYNATLLVNILIRSTLCSKQMSEKHRLNESAFDWLLGEIEHRFQQAIVQ 287

Query: 1010 --QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
              +++  +  Q++ G+                    P ++  +   + AG++        
Sbjct: 288  PGEMVGALAAQSL-GE--------------------PATQMTLNTFHFAGVSAKNVTLGV 326

Query: 1068 MGGREGLIDTAVKTAETVNVLVFL-----------------------FQVTANTAIYYDP 1104
               +E  I    K+  T ++ VFL                        +VT+NTAIYYDP
Sbjct: 327  PRLKE--IINVSKSPRTPSLTVFLQGAAAKDAEKAKDVLCKLEHTTLRKVTSNTAIYYDP 384

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DP+NT I ED+E+V+++YEMPDFD +R SPWLLRIELDRKRMTDKKLTME+I+++I+ GF
Sbjct: 385  DPKNTCIEEDEEWVSIFYEMPDFDVSRSSPWLLRIELDRKRMTDKKLTMESIADRIHQGF 444

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDLN I+ DDNA+KLV R+RI N D  K + EE  VDKMEDD+FLRCIE+NMLSD+TLQ
Sbjct: 445  GDDLNVIYTDDNADKLVFRLRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQ 503

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIEAI KVYMH P TD KKR+IITE G FKAI +WLLETDGT+L++VLSE+ VDP+RT S
Sbjct: 504  GIEAISKVYMHKPTTDDKKRMIITEEGGFKAIPEWLLETDGTALLRVLSEQSVDPIRTSS 563

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            NDICEIF+VLGIEAVRK +E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 564  NDICEIFEVLGIEAVRKGIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 623

Query: 1345 NRQD 1348
            NRQ+
Sbjct: 624  NRQE 627



 Score =  228 bits (582), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 117/167 (70%), Positives = 132/167 (79%), Gaps = 10/167 (5%)

Query: 357 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 416
           KRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTA
Sbjct: 1   KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTA 60

Query: 417 ETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKK 476
           ETGYIQRRLIKAMESVMV+YD TVRNS+ QLIQLRYGEDGL G  VE Q + T+ L++  
Sbjct: 61  ETGYIQRRLIKAMESVMVNYDGTVRNSLAQLIQLRYGEDGLDGMWVEGQMMPTMKLTNAA 120

Query: 477 FEDKYRFDPSNERPTLRNVSSLRRVVNS---KPLLIGCWKLTSVEKE 520
           FE +++ D S+ER       SLRRV +    + LL     L  VE+E
Sbjct: 121 FEKQFKLDLSDER-------SLRRVYSEDVVRDLLGSSSALKEVEEE 160



 Score =  176 bits (447), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 89/152 (58%), Positives = 107/152 (70%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT+NTAIYYDPDP+NT I ED+E+V+++YEMPDFD +R SPWLLRIELDRKRMTDKK
Sbjct: 371  LRKVTSNTAIYYDPDPKNTCIEEDEEWVSIFYEMPDFDVSRSSPWLLRIELDRKRMTDKK 430

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L                            TME+I+++I+ GFGDDLN I+ DDNA+KLV 
Sbjct: 431  L----------------------------TMESIADRIHQGFGDDLNVIYTDDNADKLVF 462

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N D  K + EE  VDKMEDD+FLRCIE
Sbjct: 463  RLRITNQDADKGESEEQ-VDKMEDDVFLRCIE 493



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/170 (47%), Positives = 106/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ QLIQLRYGEDGL G  VE Q + T+ L++  FE
Sbjct: 63  GYIQRRLIKAMESVMVNYDGTVRNSLAQLIQLRYGEDGLDGMWVEGQMMPTMKLTNAAFE 122

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++ D S+ER LRR+++EDV+R+L+GS   + E+                         
Sbjct: 123 KQFKLDLSDERSLRRVYSEDVVRDLLGSSSALKEV------------------------- 157

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     E+EW++L EDR  LR+IF  GES VVLPCNL  +I+  Q+
Sbjct: 158 ----------EEEWQQLEEDRRLLRKIFPKGESKVVLPCNLQRLIWNAQK 197



 Score =  137 bits (346), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 72/88 (81%)

Query: 1023 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 1082
            KRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTA
Sbjct: 1    KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTA 60

Query: 1083 ETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            ET  +   L +   +  + YD   +N++
Sbjct: 61   ETGYIQRRLIKAMESVMVNYDGTVRNSL 88



 Score = 94.0 bits (232), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 52/62 (83%), Gaps = 3/62 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK +E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 566 ICEIFEVLGIEAVRKGIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 625

Query: 830 QD 831
           Q+
Sbjct: 626 QE 627



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 42/46 (91%)

Query: 517 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQD 562
           +E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+
Sbjct: 582 IEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQE 627


>gi|170652034|gb|ACB21794.1| RNA polymerase II [Apis koschevnikovi]
          Length = 243

 Score =  461 bits (1187), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/289 (78%), Positives = 236/289 (81%), Gaps = 46/289 (15%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           QM NILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY
Sbjct: 1   QMXNILMFLPXWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPY 60

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           +WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NN
Sbjct: 61  KWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINN 120

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG        
Sbjct: 121 WLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG-------- 172

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
                                                 NTLRQTFENQVNRILNDARDKT
Sbjct: 173 --------------------------------------NTLRQTFENQVNRILNDARDKT 194

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFG 362
           GGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFG
Sbjct: 195 GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFG 243



 Score = 45.1 bits (105), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFG 1028
            +QVIACVGQQNVEGKRIPFG
Sbjct: 224  SQVIACVGQQNVEGKRIPFG 243


>gi|157841464|gb|ABV83198.1| RNA polymerase 2 [Protorhabditis sp. JB122]
          Length = 595

 Score =  461 bits (1187), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/424 (56%), Positives = 296/424 (69%), Gaps = 43/424 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V+GED++SKQA  NATLL   L+RSTLC+K +  +Y+L SEAFEWL+GE+E RF     I
Sbjct: 192  VSGEDRISKQAQYNATLLMNILLRSTLCSKKMGMSYKLDSEAFEWLLGEVEQRFNSX--I 249

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
            A  G           G               P ++  +   + AG++           +E
Sbjct: 250  AQPGXXXXXXXXXXXGX--------------PATQMTLNTFHYAGVSAKNVTLGVPRLKE 295

Query: 1073 GLIDTAVKTAETVNVLVFL-----------------------FQVTANTAIYYDPDPQNT 1109
              I    K  +T ++ VFL                        +VTANTAIYYDPDP+NT
Sbjct: 296  --IINVSKQLKTPSLTVFLEGAAAKDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDPKNT 353

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            VI ED+E+V+++YEMPDFDP+R SPWLLRIELDRKRMTDKKL+ME I++KI+ GFGDD+N
Sbjct: 354  VIEEDEEWVSIFYEMPDFDPSRCSPWLLRIELDRKRMTDKKLSMEQIADKIHQGFGDDIN 413

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV R+RI + D+     EE+ +DKMEDD+FLRC+E NMLSD+TLQGI +I
Sbjct: 414  VIYTDDNAEKLVFRLRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGITSI 471

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYMH P TD KKRI+I+  G FKAI +WLLETDGT+L++VLSER +DP RT SNDICE
Sbjct: 472  AKVYMHKPTTDDKKRIVISPEGGFKAIPEWLLETDGTALLRVLSERHIDPRRTSSNDICE 531

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 1349
            IF+VLGIEAVRK++++EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ 
Sbjct: 532  IFEVLGIEAVRKAIQREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEV 591

Query: 1350 GALM 1353
            GALM
Sbjct: 592  GALM 595



 Score =  179 bits (454), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/152 (57%), Positives = 108/152 (71%), Gaps = 30/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+NTVI ED+E+V+++YEMPDFDP+R SPWLLRIELDRKRMTDKK
Sbjct: 335  LRKVTANTAIYYDPDPKNTVIEEDEEWVSIFYEMPDFDPSRCSPWLLRIELDRKRMTDKK 394

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L+ME I++KI+ GF                            GDD+N I+ DDNAEKLV 
Sbjct: 395  LSMEQIADKIHQGF----------------------------GDDINVIYTDDNAEKLVF 426

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI + D+     EE+ +DKMEDD+FLRC+E
Sbjct: 427  RLRITSHDEKSA--EEEQIDKMEDDVFLRCLE 456



 Score =  144 bits (363), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 84/97 (86%)

Query: 393 TPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRY 452
           T SEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YD TVRNS+GQ+IQLRY
Sbjct: 1   TASEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSIGQMIQLRY 60

Query: 453 GEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           GEDGL G  VE+Q++ T+  ++  FE +++ D ++E+
Sbjct: 61  GEDGLDGMWVENQQMLTMKPTNAVFESEFKLDITDEK 97



 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 107/170 (62%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+GQ+IQLRYGEDGL G  VE+Q++ T+  ++  FE
Sbjct: 27  GYIQRRLIKAMESVMVNYDGTVRNSIGQMIQLRYGEDGLDGMWVENQQMLTMKPTNAVFE 86

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++ D ++E+ LR+ ++EDV+RELMGS + + E+E                        
Sbjct: 87  SEFKLDITDEKMLRKHYSEDVVRELMGSPEALREVE------------------------ 122

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF +G++ +VLPCNL  +I+  Q+
Sbjct: 123 -----------GEWAQLEEDRRLLRKIFPNGDAKIVLPCNLQRLIWNAQK 161



 Score =  101 bits (251), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/67 (70%), Positives = 57/67 (85%), Gaps = 3/67 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK++++EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 529 ICEIFEVLGIEAVRKAIQREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 588

Query: 830 QDTGALM 836
           Q+ GALM
Sbjct: 589 QEVGALM 595



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/52 (76%), Positives = 47/52 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 567
           ++++EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALM
Sbjct: 544 AIQREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALM 595



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 36/52 (69%)

Query: 1059 TPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            T SEFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 1    TASEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSI 52


>gi|170652054|gb|ACB21804.1| RNA polymerase II [Meliponula bocandei]
          Length = 243

 Score =  461 bits (1187), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/289 (77%), Positives = 237/289 (82%), Gaps = 46/289 (15%)

Query: 76  MNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQW 135
           +NILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+W
Sbjct: 1   LNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKW 60

Query: 136 ISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWL 195
           ISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWL
Sbjct: 61  ISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWL 120

Query: 196 LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIA 255
           LLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG          
Sbjct: 121 LLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG---------- 170

Query: 256 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG 315
                                               NTLRQTFENQVNRILNDARDKTGG
Sbjct: 171 ------------------------------------NTLRQTFENQVNRILNDARDKTGG 194

Query: 316 SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           SAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 195 SAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 243



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 222  SQVIACVGQQNVEGKRIPFGFR 243


>gi|357527997|gb|AET80286.1| RNA polymerase II large subunit [Stiropius sp. ALW-2011]
          Length = 319

 Score =  461 bits (1187), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/288 (78%), Positives = 236/288 (81%), Gaps = 46/288 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPDDED G
Sbjct: 78  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDEG 137

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCG+FYGNIQTV+
Sbjct: 138 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGKFYGNIQTVI 197

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 198 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 251

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 252 ----------------------------------------NTLRQTFENQVNRILNDARD 271

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRI 359
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRI
Sbjct: 272 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRI 319



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 36   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 78


>gi|170652008|gb|ACB21781.1| RNA polymerase II [Plebeia franki]
          Length = 253

 Score =  461 bits (1187), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/294 (76%), Positives = 239/294 (81%), Gaps = 46/294 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +E MM++LMFLP WDGKMPQPCIL PKPLWTGKQ+FSLI PGNVNM RTHSTHPD+ED G
Sbjct: 6   KEPMMDLLMFLPXWDGKMPQPCILXPKPLWTGKQIFSLIXPGNVNMIRTHSTHPDEEDDG 65

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 66  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 125

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 126 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 179

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 180 ----------------------------------------NTLRQTFENQVNRILNDARD 199

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 365
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRK
Sbjct: 200 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 253



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/23 (95%), Positives = 23/23 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRK 1031
            +QVIACVGQQNVEGKRIPFGFRK
Sbjct: 231  SQVIACVGQQNVEGKRIPFGFRK 253


>gi|170652012|gb|ACB21783.1| RNA polymerase II [Scaptotrigona sp. MP103]
          Length = 246

 Score =  461 bits (1186), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/291 (77%), Positives = 238/291 (81%), Gaps = 46/291 (15%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           MMNILMFLP WDGKM QPCILKPKPLWTGKQ+FSLIIPGNV+M RTHSTHPD+ED GPY+
Sbjct: 2   MMNILMFLPSWDGKMXQPCILKPKPLWTGKQIFSLIIPGNVHMIRTHSTHPDEEDDGPYK 61

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNW
Sbjct: 62  WISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNW 121

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG         
Sbjct: 122 LLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG--------- 172

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                NTLRQTFENQVNRILNDARDKTG
Sbjct: 173 -------------------------------------NTLRQTFENQVNRILNDARDKTG 195

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 365
           GSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRK
Sbjct: 196 GSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 246



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/23 (95%), Positives = 23/23 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRK 1031
            +QVIACVGQQNVEGKRIPFGFRK
Sbjct: 224  SQVIACVGQQNVEGKRIPFGFRK 246


>gi|357527877|gb|AET80226.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
 gi|357527975|gb|AET80275.1| RNA polymerase II large subunit [Heterospilus sp. ST69C]
 gi|357527983|gb|AET80279.1| RNA polymerase II large subunit [Notiospathius angustus]
          Length = 319

 Score =  461 bits (1186), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/288 (78%), Positives = 236/288 (81%), Gaps = 46/288 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 78  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 137

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 138 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 197

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 198 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 251

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 252 ----------------------------------------NTLRQTFENQVNRILNDARD 271

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRI 359
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRI
Sbjct: 272 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRI 319



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 36   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 78


>gi|357527949|gb|AET80262.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
          Length = 321

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/288 (78%), Positives = 236/288 (81%), Gaps = 46/288 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 80  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 139

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 140 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 199

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 200 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 253

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 254 ----------------------------------------NTLRQTFENQVNRILNDARD 273

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRI 359
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRI
Sbjct: 274 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRI 321



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 38   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 80


>gi|157841492|gb|ABV83212.1| RNA polymerase 2 [Rhabditoides regina]
          Length = 626

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/405 (59%), Positives = 293/405 (72%), Gaps = 16/405 (3%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
            V+G+D++SKQA  NATLL   L+RSTLC+K +AE ++L+ E FEWL+GEIE RFQ A  Q
Sbjct: 228  VSGDDRISKQAQYNATLLMNILIRSTLCSKQMAEKHKLNEEGFEWLLGEIETRFQLAIAQ 287

Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-----VENSYLAGLTPS-EFF 1064
                VG    +    P         HF        + G      + N   +  TPS   F
Sbjct: 288  PGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVF 347

Query: 1065 FHAMGGREGLIDTAV--KTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
             H    ++      V  K   T      L +VT+NTAIYYDPDP+NT I ED+E+V+++Y
Sbjct: 348  LHGAAAKDAEKAKDVLCKLEHTT-----LRKVTSNTAIYYDPDPKNTCIEEDEEWVSIFY 402

Query: 1123 EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1182
            EMPDFDP+R SPWLLRIELDRKRMTDKKLTME+I+++I+ GFGDDLN I+ DDNA+KLV 
Sbjct: 403  EMPDFDPSRCSPWLLRIELDRKRMTDKKLTMESIADRIHQGFGDDLNVIYTDDNADKLVF 462

Query: 1183 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1242
            R+RI N  + K + EE  VDKMEDD+FLRCIE+NMLSD+TLQGIEAI KVYMH P TD K
Sbjct: 463  RLRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGIEAIAKVYMHKPTTDDK 521

Query: 1243 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1302
            KR++IT  G FKAI +WLLETDGT+L++VL+E  VDP+RT SNDICEIF+VLGIEAVRK 
Sbjct: 522  KRMVITPEGGFKAIPEWLLETDGTALLRVLAESAVDPIRTSSNDICEIFEVLGIEAVRKG 581

Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 1347
            +E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ
Sbjct: 582  IEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 626



 Score =  223 bits (569), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 108/149 (72%), Positives = 125/149 (83%), Gaps = 7/149 (4%)

Query: 357 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 416
           KRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTA
Sbjct: 1   KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTA 60

Query: 417 ETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKK 476
           ETGYIQRRLIKAMESVMV+YD TVRNS+ Q+IQLRYGEDGL G  VE Q + T+ L++  
Sbjct: 61  ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMIQLRYGEDGLDGMWVEGQMMPTMKLTNAA 120

Query: 477 FEDKYRFDPSNERPTLRNVSSLRRVVNSK 505
           FE +++ D S++R       SLRR+ + +
Sbjct: 121 FEKQFKLDLSDDR-------SLRRIYSEE 142



 Score =  179 bits (453), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/152 (58%), Positives = 108/152 (71%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT+NTAIYYDPDP+NT I ED+E+V+++YEMPDFDP+R SPWLLRIELDRKRMTDKK
Sbjct: 371  LRKVTSNTAIYYDPDPKNTCIEEDEEWVSIFYEMPDFDPSRCSPWLLRIELDRKRMTDKK 430

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME+I+++I+ GFG                            DDLN I+ DDNA+KLV 
Sbjct: 431  LTMESIADRIHQGFG----------------------------DDLNVIYTDDNADKLVF 462

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N  + K + EE  VDKMEDD+FLRCIE
Sbjct: 463  RLRITNQSEDKGETEEQ-VDKMEDDVFLRCIE 493



 Score =  145 bits (366), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 104/170 (61%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q+IQLRYGEDGL G  VE Q + T+ L++  FE
Sbjct: 63  GYIQRRLIKAMESVMVNYDGTVRNSLAQMIQLRYGEDGLDGMWVEGQMMPTMKLTNAAFE 122

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++ D S++R LRRI++E+V+R+L GS D + E                          
Sbjct: 123 KQFKLDLSDDRSLRRIYSEEVVRDLQGSTDALKE-------------------------- 156

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                    +E EW +L EDR  LR+IF  G+S VVLPCNL  +I+  Q+
Sbjct: 157 ---------VEDEWLQLEEDRRLLRKIFPKGDSKVVLPCNLQRLIWNAQK 197



 Score =  138 bits (347), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/193 (43%), Positives = 110/193 (56%), Gaps = 21/193 (10%)

Query: 1023 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 1082
            KRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTA
Sbjct: 1    KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTA 60

Query: 1083 ETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELD 1142
            ET  +   L +   +  + YD   +N++     + + + Y     D      W     ++
Sbjct: 61   ETGYIQRRLIKAMESVMVNYDGTVRNSL----AQMIQLRYGEDGLD----GMW-----VE 107

Query: 1143 RKRMTDKKLTMEAISEKINAGFGDD--LNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDA 1200
             + M   KLT  A  ++      DD  L  I++++    L        S D+  + E++ 
Sbjct: 108  GQMMPTMKLTNAAFEKQFKLDLSDDRSLRRIYSEEVVRDL------QGSTDALKEVEDEW 161

Query: 1201 VDKMEDDMFLRCI 1213
            +   ED   LR I
Sbjct: 162  LQLEEDRRLLRKI 174



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/61 (72%), Positives = 51/61 (83%), Gaps = 3/61 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK +E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 566 ICEIFEVLGIEAVRKGIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 625

Query: 830 Q 830
           Q
Sbjct: 626 Q 626



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 517 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 561
           +E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ
Sbjct: 582 IEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 626


>gi|170652026|gb|ACB21790.1| RNA polymerase II [Apis cerana]
 gi|170652062|gb|ACB21808.1| RNA polymerase II [Apis cerana]
          Length = 241

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/287 (78%), Positives = 235/287 (81%), Gaps = 46/287 (16%)

Query: 76  MNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQW 135
           MNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+W
Sbjct: 1   MNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKW 60

Query: 136 ISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWL 195
           ISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWL
Sbjct: 61  ISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWL 120

Query: 196 LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIA 255
           LLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG          
Sbjct: 121 LLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG---------- 170

Query: 256 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG 315
                                               NTLRQTFENQVNRILNDARDKTGG
Sbjct: 171 ------------------------------------NTLRQTFENQVNRILNDARDKTGG 194

Query: 316 SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFG 362
           SAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFG
Sbjct: 195 SAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFG 241



 Score = 45.4 bits (106), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFG 1028
            +QVIACVGQQNVEGKRIPFG
Sbjct: 222  SQVIACVGQQNVEGKRIPFG 241


>gi|356605932|gb|AET24997.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 14
            KK-2011]
          Length = 624

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/425 (56%), Positives = 298/425 (70%), Gaps = 42/425 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+G D++SKQA  NATLL   L+RSTLCTK +    +L++EAF+WL+GEIE+RFQQA   
Sbjct: 217  VSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTTAKLNTEAFDWLLGEIESRFQQAIAQ 276

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  +  Q+                 V  K +  G  R + + +  K    P    F
Sbjct: 277  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVF 336

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            +  +             A    E   D   K   T      L +VT NTAIYYDPDP+NT
Sbjct: 337  LTGA-------------AAKDPEKAKDVLCKLEHTT-----LKKVTCNTAIYYDPDPKNT 378

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            VI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKKLTME I+++I+ GFG+D++
Sbjct: 379  VISEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVH 438

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV R+RI   +D     +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI
Sbjct: 439  TIYTDDNAEKLVFRLRIA-GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAI 497

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYM+ P TD KKRI+IT  G FKA+ADW+LETDGT+L++VLSER +DPVRT SNDICE
Sbjct: 498  SKVYMNQPNTDDKKRIVITPEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICE 557

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 1349
            IF+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ 
Sbjct: 558  IFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEV 617

Query: 1350 GALMR 1354
            GALMR
Sbjct: 618  GALMR 622



 Score =  198 bits (504), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/129 (73%), Positives = 109/129 (84%)

Query: 368 LPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK 427
           LPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK
Sbjct: 1   LPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK 60

Query: 428 AMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSN 487
           AMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE  +R D ++
Sbjct: 61  AMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTD 120

Query: 488 ERPTLRNVS 496
            R   +N S
Sbjct: 121 NRFLRKNYS 129



 Score =  166 bits (420), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/152 (55%), Positives = 104/152 (68%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKK
Sbjct: 360  LKKVTCNTAIYYDPDPKNTVISEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKK 419

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+ GFG+D++T                            I+ DDNAEKLV 
Sbjct: 420  LTMEMIADRIHGGFGNDVHT----------------------------IYTDDNAEKLVF 451

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   +D     +E+ VDKMEDD+FLRCIE
Sbjct: 452  RLRIA-GEDKGADTQEEQVDKMEDDVFLRCIE 482



 Score =  130 bits (327), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 100/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 52  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 111

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++ R LR+ ++EDV+RE+  S + IS +E                        
Sbjct: 112 RDFRMDLTDNRFLRKNYSEDVVREIQESEEGISLVE------------------------ 147

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 148 -----------SEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQK 186



 Score =  116 bits (291), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/77 (70%), Positives = 62/77 (80%)

Query: 1034 LPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQ 1093
            LPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET  +   L +
Sbjct: 1    LPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK 60

Query: 1094 VTANTAIYYDPDPQNTV 1110
               +  + YD   +N++
Sbjct: 61   AMESVMVNYDGTVRNSL 77



 Score =  105 bits (261), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 58/68 (85%), Gaps = 3/68 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 555 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 614

Query: 830 QDTGALMR 837
           Q+ GALMR
Sbjct: 615 QEVGALMR 622



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/53 (79%), Positives = 48/53 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 568
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMR
Sbjct: 570 AIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMR 622


>gi|194460373|gb|ACF71861.1| RNA polymerase II [Euglossa decorata]
          Length = 239

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/285 (78%), Positives = 234/285 (82%), Gaps = 46/285 (16%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGI
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 239



 Score = 60.5 bits (145), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 27/27 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            +QVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRTLP 239


>gi|170652010|gb|ACB21782.1| RNA polymerase II [Scaptotrigona sp. MP102]
          Length = 247

 Score =  459 bits (1180), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/289 (77%), Positives = 236/289 (81%), Gaps = 46/289 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 5   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 64

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGH VCGRFYGNIQTV+
Sbjct: 65  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHXVCGRFYGNIQTVI 124

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 125 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 178

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 179 ----------------------------------------NTLRQTFENQVNRILNDARD 198

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP 360
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP
Sbjct: 199 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIP 247


>gi|170652151|gb|ACB21852.1| RNA polymerase II [Melipona sp. MP96]
          Length = 241

 Score =  458 bits (1179), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/287 (78%), Positives = 235/287 (81%), Gaps = 46/287 (16%)

Query: 78  ILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWIS 137
           ILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WIS
Sbjct: 1   ILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWIS 60

Query: 138 PGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLL 197
           PGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLL
Sbjct: 61  PGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLL 120

Query: 198 EGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADP 257
           EGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG            
Sbjct: 121 EGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------------ 168

Query: 258 QTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSA 317
                                             NTLRQTFENQVNRILNDARDKTGGSA
Sbjct: 169 ----------------------------------NTLRQTFENQVNRILNDARDKTGGSA 194

Query: 318 KKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 195 KKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 241



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 220  SQVIACVGQQNVEGKRIPFGFR 241


>gi|170652032|gb|ACB21793.1| RNA polymerase II [Apis koschevnikovi]
          Length = 240

 Score =  458 bits (1178), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/286 (78%), Positives = 234/286 (81%), Gaps = 46/286 (16%)

Query: 79  LMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISP 138
           LMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISP
Sbjct: 1   LMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISP 60

Query: 139 GDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLE 198
           GDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLE
Sbjct: 61  GDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLE 120

Query: 199 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQ 258
           GHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG             
Sbjct: 121 GHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------- 167

Query: 259 TYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAK 318
                                            NTLRQTFENQVNRILNDARDKTGGSAK
Sbjct: 168 ---------------------------------NTLRQTFENQVNRILNDARDKTGGSAK 194

Query: 319 KSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFR
Sbjct: 195 KSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 240



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIPFGFR
Sbjct: 219  SQVIACVGQQNVEGKRIPFGFR 240


>gi|170652117|gb|ACB21835.1| RNA polymerase II [Melipona quadrifasciata anthidioides]
          Length = 242

 Score =  458 bits (1178), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/288 (77%), Positives = 235/288 (81%), Gaps = 46/288 (15%)

Query: 76  MNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQW 135
           MNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+W
Sbjct: 1   MNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKW 60

Query: 136 ISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWL 195
           ISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCG FYGNIQTV+NNWL
Sbjct: 61  ISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGLFYGNIQTVINNWL 120

Query: 196 LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIA 255
           LLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG          
Sbjct: 121 LLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG---------- 170

Query: 256 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG 315
                                               NTLRQTFENQVNRILNDARDKTGG
Sbjct: 171 ------------------------------------NTLRQTFENQVNRILNDARDKTGG 194

Query: 316 SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGF 363
           SAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGF
Sbjct: 195 SAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGF 242



 Score = 48.1 bits (113), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 20/21 (95%), Positives = 21/21 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGF 1029
            +QVIACVGQQNVEGKRIPFGF
Sbjct: 222  SQVIACVGQQNVEGKRIPFGF 242


>gi|170652131|gb|ACB21842.1| RNA polymerase II [Melipona asilvai]
          Length = 241

 Score =  457 bits (1177), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/287 (78%), Positives = 235/287 (81%), Gaps = 46/287 (16%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           QMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY
Sbjct: 1   QMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPY 60

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
           +WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NN
Sbjct: 61  KWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINN 120

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG        
Sbjct: 121 WLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG-------- 172

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
                                                 NTLRQTFENQVNRILNDARDKT
Sbjct: 173 --------------------------------------NTLRQTFENQVNRILNDARDKT 194

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP 360
           GGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP
Sbjct: 195 GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIP 241


>gi|356605942|gb|AET25002.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 20
            KK-2011]
          Length = 505

 Score =  457 bits (1177), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/423 (56%), Positives = 299/423 (70%), Gaps = 42/423 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D +SKQA  NATLL   L+RSTLCTK +    +L++EAF+WL+GEIE+RF Q+  I
Sbjct: 102  VCGNDDISKQAQYNATLLMNILLRSTLCTKKMCTTAKLNTEAFDWLLGEIESRFLQS--I 159

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
            A  G+       +      ++L         P ++  +   + AG++           +E
Sbjct: 160  AQPGE-------MVGALAAQSLGE-------PATQMTLNTFHYAGVSAKNVTLGVPRLKE 205

Query: 1073 GLIDTAVKTAETVNVLVFLF-----------------------QVTANTAIYYDPDPQNT 1109
              I    K  +T ++ VFL                        +VTANTAIYYDPDP NT
Sbjct: 206  --IINVSKQLKTPSLTVFLTGAAAKDAEKAKDVLCKLEHTTLKKVTANTAIYYDPDPTNT 263

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            VI ED+E+V+++YEMPDFDP++ SPWLLRIELDRKRM DKKL+ME I+EKI  GFG+D++
Sbjct: 264  VINEDEEWVSIFYEMPDFDPSKSSPWLLRIELDRKRMVDKKLSMETIAEKIQGGFGNDVH 323

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV R+RI + DD   + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI
Sbjct: 324  TIYTDDNAEKLVFRLRI-SGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAI 382

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYM+ P TD KKRIIIT  G FKA++DW+LETDGT+L++VLSER +DPVRT SNDICE
Sbjct: 383  SKVYMNQPNTDDKKRIIITPEGGFKAVSDWILETDGTALLRVLSERQIDPVRTTSNDICE 442

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 1349
            IF+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ 
Sbjct: 443  IFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEV 502

Query: 1350 GAL 1352
            GAL
Sbjct: 503  GAL 505



 Score =  176 bits (447), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 88/152 (57%), Positives = 107/152 (70%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP NTVI ED+E+V+++YEMPDFDP++ SPWLLRIELDRKRM DKK
Sbjct: 245  LKKVTANTAIYYDPDPTNTVINEDEEWVSIFYEMPDFDPSKSSPWLLRIELDRKRMVDKK 304

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L+ME I+EKI  GFG+D++T                            I+ DDNAEKLV 
Sbjct: 305  LSMETIAEKIQGGFGNDVHT----------------------------IYTDDNAEKLVF 336

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI + DD   + +E+ VDKMEDD+FLRCIE
Sbjct: 337  RLRI-SGDDKSAEGQEEQVDKMEDDVFLRCIE 367



 Score =  100 bits (250), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 56/66 (84%), Gaps = 3/66 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 440 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 499

Query: 830 QDTGAL 835
           Q+ GAL
Sbjct: 500 QEVGAL 505



 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/51 (78%), Positives = 46/51 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 566
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GAL
Sbjct: 455 AIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGAL 505



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 41/59 (69%)

Query: 703 FNEDVLRELMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
           ++EDV+REL  S D I  +E EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 13  YSEDVIRELQESQDAIELVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQK 71


>gi|1916670|gb|AAB51213.1| large subunit RNA polymerase II, partial [unidentified nematode]
          Length = 633

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/425 (56%), Positives = 301/425 (70%), Gaps = 42/425 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D +SKQA  NATLL   L+RS LCTK +  + +L++EAF+WL+GEIE+RF QA  I
Sbjct: 228  VCGNDDISKQAQYNATLLMNILLRSALCTKKMCTSSKLNTEAFDWLLGEIESRFMQA--I 285

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
            A  G+       +      ++L         P ++  +   + AG++           +E
Sbjct: 286  AQPGE-------MVGALAAQSLGE-------PATQMTLNTFHYAGVSAKNVTLGVPRLKE 331

Query: 1073 GLIDTAVKTAETVNVLVFLF-----------------------QVTANTAIYYDPDPQNT 1109
              I    K  +T ++ VFL                        +VTANTAIYYDPDP+NT
Sbjct: 332  --IINVSKQLKTPSLTVFLTGAAAKDAEKAKDVLCKLEHTTLKKVTANTAIYYDPDPKNT 389

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            VI ED+E+V+++YEMPDFD TR SPWLLRIELDRKRMTDK LTME I+++I++GFG D++
Sbjct: 390  VIGEDEEWVSIFYEMPDFDTTRTSPWLLRIELDRKRMTDKNLTMEMIADRIHSGFGQDVH 449

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV R+RI   +D   + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI
Sbjct: 450  TIYTDDNAEKLVFRLRIA-GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAI 508

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYM+ P TD KKRIIITE G FK+I +W+LETDGT+L++VLSER +DPVRT SNDICE
Sbjct: 509  SKVYMNQPNTDDKKRIIITEEGGFKSITEWILETDGTALLRVLSERQIDPVRTSSNDICE 568

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 1349
            IF+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ 
Sbjct: 569  IFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEV 628

Query: 1350 GALMR 1354
            GALMR
Sbjct: 629  GALMR 633



 Score =  218 bits (554), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 103/133 (77%), Positives = 116/133 (87%)

Query: 357 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 416
           KRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA
Sbjct: 1   KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 60

Query: 417 ETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKK 476
           ETGYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  
Sbjct: 61  ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNNAV 120

Query: 477 FEDKYRFDPSNER 489
           FE  +R D ++ R
Sbjct: 121 FERDFRTDLTDHR 133



 Score =  174 bits (440), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 87/152 (57%), Positives = 107/152 (70%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+NTVI ED+E+V+++YEMPDFD TR SPWLLRIELDRKRMTDK 
Sbjct: 371  LKKVTANTAIYYDPDPKNTVIGEDEEWVSIFYEMPDFDTTRTSPWLLRIELDRKRMTDKN 430

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I++GFG D++T                            I+ DDNAEKLV 
Sbjct: 431  LTMEMIADRIHSGFGQDVHT----------------------------IYTDDNAEKLVF 462

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   +D   + +E+ VDKMEDD+FLRCIE
Sbjct: 463  RLRIA-GEDKAAEGQEEQVDKMEDDVFLRCIE 493



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 72/88 (81%)

Query: 1023 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 1082
            KRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA
Sbjct: 1    KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 60

Query: 1083 ETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            ET  +   L +   +  + YD   +N++
Sbjct: 61   ETGYIQRRLIKAMESVMVNYDGTVRNSL 88



 Score =  129 bits (325), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 97/170 (57%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 63  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNNAVFE 122

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++ R L   + EDV+REL  S + I ++E                        
Sbjct: 123 RDFRTDLTDHRFLENSYTEDVIRELQESSEAIEKIE------------------------ 158

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +++  Q+
Sbjct: 159 -----------SEWAQLSEDRRLLRKIFPKGDAKIVLPCNLQRLMWNAQK 197



 Score =  104 bits (260), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 58/68 (85%), Gaps = 3/68 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 566 ICEIFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 625

Query: 830 QDTGALMR 837
           Q+ GALMR
Sbjct: 626 QEVGALMR 633



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/53 (79%), Positives = 48/53 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 568
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMR
Sbjct: 581 AIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMR 633


>gi|157841498|gb|ABV83215.1| RNA polymerase 2 [Pristionchus pacificus]
          Length = 583

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/409 (58%), Positives = 287/409 (70%), Gaps = 42/409 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V GED++SKQA  NATLL   LVRSTLC+K +AE +RL+SEAFEWL+GEIE RFQQA   
Sbjct: 195  VGGEDRISKQAQYNATLLMNILVRSTLCSKQLAEKHRLNSEAFEWLLGEIETRFQQAIAQ 254

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 255  PGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPR--LKEIINISKQPKTPSLT 312

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
               YL G    +                 K   T      L +VTANTAIYYDPDPQ T 
Sbjct: 313  --VYLQGAAAKDAEKAKD--------VLCKLEHTT-----LRKVTANTAIYYDPDPQQTC 357

Query: 1111 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNC 1170
            I ED+E+V+++YEMPDFDP+R SPWLLR+ELDRKRMTDKKLTMEAI+EKI+ GFGDDLN 
Sbjct: 358  ITEDEEWVSIFYEMPDFDPSRASPWLLRLELDRKRMTDKKLTMEAIAEKIHNGFGDDLNV 417

Query: 1171 IFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIG 1230
            I+ DDNA+KLV R+RI N D     D E+ VDKMEDD+FLRCIE+NMLSD+TLQGIE+I 
Sbjct: 418  IYTDDNADKLVFRLRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGIESIS 474

Query: 1231 KVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEI 1290
            KVYMH P TD KKR IIT  G FKAIA+W+LETDGT+L++VLSE++VDP RT SNDICEI
Sbjct: 475  KVYMHKPTTDDKKRTIITPDGSFKAIAEWILETDGTALLRVLSEKNVDPARTTSNDICEI 534

Query: 1291 FQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1339
            F++LGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 535  FEILGIEAVRKAIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAI 583



 Score =  183 bits (464), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 106/152 (69%), Gaps = 31/152 (20%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ T I ED+E+V+++YEMPDFDP+R SPWLLR+ELDRKRMTDKK
Sbjct: 338  LRKVTANTAIYYDPDPQQTCITEDEEWVSIFYEMPDFDPSRASPWLLRLELDRKRMTDKK 397

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L                            TMEAI+EKI+ GFGDDLN I+ DDNA+KLV 
Sbjct: 398  L----------------------------TMEAIAEKIHNGFGDDLNVIYTDDNADKLVF 429

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N D     D E+ VDKMEDD+FLRCIE
Sbjct: 430  RLRITNQDKG---DSEEQVDKMEDDVFLRCIE 458



 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/100 (73%), Positives = 84/100 (84%)

Query: 390 AGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQ 449
           AGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV YD TVRNS+ Q+IQ
Sbjct: 1   AGLTPAEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVCYDGTVRNSLQQMIQ 60

Query: 450 LRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           LRYGEDGL G  VE+Q + ++  S+  FE  +R D ++ER
Sbjct: 61  LRYGEDGLDGMWVENQGMPSMKPSNSLFEANFRLDLADER 100



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 103/170 (60%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD TVRNS+ Q+IQLRYGEDGL G  VE+Q + ++  S+  FE
Sbjct: 30  GYIQRRLIKAMESVMVCYDGTVRNSLQQMIQLRYGEDGLDGMWVENQGMPSMKPSNSLFE 89

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++ER L++++++D++RELMGS + + E E E                      
Sbjct: 90  ANFRLDLADERGLKKMYSDDLVRELMGSSEALKEAEAE---------------------- 127

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                        W++L EDRE LR IF  G++ +VLPCNL  +I+  Q+
Sbjct: 128 -------------WQQLQEDRELLRMIFPKGDAKIVLPCNLQRLIWNAQK 164



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 44/53 (83%), Gaps = 3/53 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 822
           +C+I  +L   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 531 ICEIFEILGIEAVRKAIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAI 583



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 4/67 (5%)

Query: 1056 AGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQ 1115
            AGLTP+EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++    Q
Sbjct: 1    AGLTPAEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVCYDGTVRNSL----Q 56

Query: 1116 EFVNVYY 1122
            + + + Y
Sbjct: 57   QMIQLRY 63



 Score = 67.4 bits (163), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 34/38 (89%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 553
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 546 AIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAI 583


>gi|194460464|gb|ACF71906.1| RNA polymerase II [Exaerete azteca]
          Length = 239

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/285 (78%), Positives = 233/285 (81%), Gaps = 46/285 (16%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGI
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR LP
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRXLP 239



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/27 (92%), Positives = 26/27 (96%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            +QVIACVGQQNVEGKRIPFGFRKR LP
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKRXLP 239


>gi|170652018|gb|ACB21786.1| RNA polymerase II [Cephalotrigona sp. MP106]
          Length = 244

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/287 (77%), Positives = 235/287 (81%), Gaps = 46/287 (16%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 4   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 63

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 64  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 123

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 124 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 177

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 178 ----------------------------------------NTLRQTFENQVNRILNDARD 197

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKR 358
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKR
Sbjct: 198 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKR 244


>gi|83320434|gb|ABC02844.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
          Length = 1015

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/410 (57%), Positives = 278/410 (67%), Gaps = 50/410 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           +MNILM++  WDG +P P ILKP+PLWTGKQ+ ++I+P N+N    HS HPDDE S    
Sbjct: 481 VMNILMWVADWDGVIPTPAILKPQPLWTGKQLVTMIVPKNINCITYHSAHPDDEKSD--- 537

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            ISPGDTKVVVE+G LL GI+CKK++G S+G  +H+   E G EV  +F+   Q VVN W
Sbjct: 538 -ISPGDTKVVVENGELLSGIVCKKTVGASNGGWVHVAMNEHGPEVAKKFFSGAQAVVNYW 596

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G                                               SIGIGDTI
Sbjct: 597 LLQHGF----------------------------------------------SIGIGDTI 610

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD QT   I   I  AK+ V E+I  A    LE  PG T+R+TFEN+VNR LN ARD +G
Sbjct: 611 ADGQTTEHITETINSAKQRVSEIILSAQQDTLECAPGMTIRETFENKVNRELNRARDHSG 670

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL E NN+K MVV+GSKGS INISQ+ ACVGQQNVEGKRIPFGF+ RTLPHF KD
Sbjct: 671 RSAEKSLKEENNVKQMVVSGSKGSFINISQMSACVGQQNVEGKRIPFGFKFRTLPHFTKD 730

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAVKTAETGYIQRRL+KA+E VMV
Sbjct: 731 DYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMV 790

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            YD TVRNS+G +IQ  YGEDG+ G  VE Q +D++ +S++KFE  Y+ D
Sbjct: 791 KYDGTVRNSLGNIIQFCYGEDGMDGCFVEKQTLDSIRMSNEKFEKSYKVD 840



 Score =  153 bits (386), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 82/102 (80%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF+ RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 699  SQMSACVGQQNVEGKRIPFGFKFRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFYFHAM 758

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 759  GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSL 800



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 94/170 (55%), Gaps = 34/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD TVRNS+G +IQ  YGEDG+ G  VE Q +D++ +S++KFE
Sbjct: 775 GYIQRRLVKALEDVMVKYDGTVRNSLGNIIQFCYGEDGMDGCFVEKQTLDSIRMSNEKFE 834

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             Y+ D  ++    + F   VL                             FN  +L+++
Sbjct: 835 KSYKVDVMDK---EKGFKPGVLE----------------------------FN--ILKDV 861

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVIFILQ 760
            G+      L++E+ +LC+DR  LRE IF+SG+    LP NL  +++  Q
Sbjct: 862 EGNDSTQMMLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLKRLVWNAQ 911



 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 48/59 (81%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G D+LS +A  NATLL+QCL+RSTL TK V E++ L+++AFEW++GEIE RFQ AQV
Sbjct: 943  VRGSDKLSNEAQLNATLLYQCLLRSTLSTKRVLEDFHLNAQAFEWILGEIETRFQTAQV 1001



 Score = 68.2 bits (165), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 29/137 (21%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            ++ I + P+QII+PQ+N+PVMGIVQDTL  +RK TKRD F+DK                 
Sbjct: 436  IKEICMVPKQIISPQSNKPVMGIVQDTLCGIRKFTKRDCFVDKALV-------------- 481

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKIN-----AGFG 1603
                   +N+   + D+D    +P +L+    +   T K+L    + + IN     +   
Sbjct: 482  -------MNILMWVADWDGVIPTPAILK---PQPLWTGKQLVTMIVPKNINCITYHSAHP 531

Query: 1604 DDLNTPLSPTDKKLTME 1620
            DD  + +SP D K+ +E
Sbjct: 532  DDEKSDISPGDTKVVVE 548


>gi|195566227|ref|XP_002105705.1| GD15986 [Drosophila simulans]
 gi|194204074|gb|EDX17650.1| GD15986 [Drosophila simulans]
          Length = 1150

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/293 (74%), Positives = 237/293 (80%), Gaps = 46/293 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MN+LMFLP WD KMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 REQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDEG 608

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKKSLGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 668

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL EGHSIGIGDTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPG      
Sbjct: 669 NNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPG------ 722

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFEN+VNRILNDARD
Sbjct: 723 ----------------------------------------NTLRQTFENKVNRILNDARD 742

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFR
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFR 795



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE  ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 223 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 272



 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 44/54 (81%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +      + + P
Sbjct: 507  VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLP 560



 Score = 48.9 bits (115), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 20/22 (90%), Positives = 22/22 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFR 1030
            +QVIACVGQQNVEGKRIP+GFR
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFR 795


>gi|357527865|gb|AET80220.1| RNA polymerase II large subunit [Heterospilus sp. GR37]
          Length = 316

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/285 (77%), Positives = 233/285 (81%), Gaps = 46/285 (16%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 78  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 137

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 138 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 197

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 198 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 251

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 252 ----------------------------------------NTLRQTFENQVNRILNDARD 271

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEG 356
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEG
Sbjct: 272 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEG 316



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 36   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 78


>gi|170652064|gb|ACB21809.1| RNA polymerase II [Apis florea]
          Length = 245

 Score =  455 bits (1171), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/286 (77%), Positives = 234/286 (81%), Gaps = 46/286 (16%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 6   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 65

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 66  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 125

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 126 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 179

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 180 ----------------------------------------NTLRQTFENQVNRILNDARD 199

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGK 357
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGK
Sbjct: 200 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGK 245


>gi|157841478|gb|ABV83205.1| RNA polymerase 2 [Pellioditis sp. JU274]
          Length = 526

 Score =  455 bits (1171), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/417 (55%), Positives = 294/417 (70%), Gaps = 42/417 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+GED++SKQA  NATLL   L+RSTLC+K +A  Y+L++EAFEWL+GE+E RFQQA   
Sbjct: 129  VSGEDRISKQAQYNATLLMNILLRSTLCSKKMASTYKLNAEAFEWLLGEVETRFQQAIAQ 188

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  +  Q+                 V  K +  G  R + + +  K    P     
Sbjct: 189  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSL--- 245

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
                YL G         A    +   D   K   T      L +VT+NTAIYYDP+PQ+T
Sbjct: 246  --TVYLTG--------AATKDADRAKDVLCKLEHTT-----LRKVTSNTAIYYDPNPQST 290

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
             I ED+++V+++YEMPDFDP+R SPWLLR+ELDRKRM DKKLTME I++K+++GFGDDLN
Sbjct: 291  CIEEDEDWVSIFYEMPDFDPSRSSPWLLRVELDRKRMVDKKLTMEQIADKVHSGFGDDLN 350

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNA+KLV R+RI N DD K  + E+ VDKMEDD+FLRCIE+NMLS++TLQGI+ I
Sbjct: 351  VIYTDDNADKLVFRLRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQQI 409

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYMH P TD KK+I I   G FK+ A+W+LETDG  L++VLSE+++DPVRT SNDICE
Sbjct: 410  SKVYMHKPSTDDKKKIEIAPDGSFKSKAEWILETDGIGLLRVLSEQNIDPVRTTSNDICE 469

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1346
            IF+VLGIEAVRKS+E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 470  IFEVLGIEAVRKSIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 526



 Score =  176 bits (447), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 86/152 (56%), Positives = 108/152 (71%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT+NTAIYYDP+PQ+T I ED+++V+++YEMPDFDP+R SPWLLR+ELDRKRM DKK
Sbjct: 272  LRKVTSNTAIYYDPNPQSTCIEEDEDWVSIFYEMPDFDPSRSSPWLLRVELDRKRMVDKK 331

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LT                            ME I++K+++GFGDDLN I+ DDNA+KLV 
Sbjct: 332  LT----------------------------MEQIADKVHSGFGDDLNVIYTDDNADKLVF 363

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N DD K  + E+ VDKMEDD+FLRCIE
Sbjct: 364  RLRITNQDD-KSSESEEQVDKMEDDVFLRCIE 394



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 51/60 (85%), Gaps = 3/60 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRKS+E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 467 ICEIFEVLGIEAVRKSIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 526



 Score = 87.4 bits (215), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/45 (84%), Positives = 41/45 (91%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 560
           S+E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 482 SIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 526



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 35/133 (26%)

Query: 629 GLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEK 688
           GL G  VE+Q + T+  +++ FE  ++ D ++ER LR+ +                    
Sbjct: 1   GLDGMWVENQNMITMKPTNQNFERDFKLDLADERTLRKFYT------------------- 41

Query: 689 EMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVL 748
                           ED +RE+ GS + +  +E+EW +L EDR  LR+IF  G++ VVL
Sbjct: 42  ----------------EDTVREIQGSTEALKLVEEEWAQLEEDRRLLRKIFPRGDAKVVL 85

Query: 749 PCNLMEVIFILQR 761
           PCNL  +I+  Q+
Sbjct: 86  PCNLNRLIWNAQK 98


>gi|50346885|gb|AAT75149.1| RNA polymerase 2 [Caenorhabditis drosophilae]
          Length = 633

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/418 (56%), Positives = 306/418 (73%), Gaps = 33/418 (7%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G D +SKQA  NATLL   L+RSTLCTK +  + +L++EAF+WL+GE+E+RF QA   
Sbjct: 231  VGGSDDISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDWLLGEVESRFMQAIAQ 290

Query: 1010 --QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-------VENSYLAGLTP 1060
              +++  +  Q++ G+  P    + TL  F       ++          + N      TP
Sbjct: 291  PGEMVGALAAQSL-GEPAP----QMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKQLKTP 345

Query: 1061 SEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPED 1114
            S   F        LI  A + AE   +VL       L +VTANTAIYYDPDP+NTVI ED
Sbjct: 346  SLTVF--------LIGAAARDAEKAKDVLCKLEHTTLKKVTANTAIYYDPDPKNTVINED 397

Query: 1115 QEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFND 1174
            +E+V+++YEMPDFD TR SPWLLRIELDRKRMTDKKLTME I+++I++GFG+D++ I+ D
Sbjct: 398  EEWVSIFYEMPDFDTTRTSPWLLRIELDRKRMTDKKLTMEMIADRIHSGFGNDVHTIYTD 457

Query: 1175 DNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYM 1234
            DNAEKLV R+RI  + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQGI +I KVYM
Sbjct: 458  DNAEKLVFRLRI--AGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYM 515

Query: 1235 HLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVL 1294
            + P TD KKR +IT+ G FK+I +W+LETDGT+L++VL+E+ +DPVRT SNDICEIF+VL
Sbjct: 516  NQPNTDDKKRTVITDEGGFKSITEWILETDGTALLRVLAEQQIDPVRTTSNDICEIFEVL 575

Query: 1295 GIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 1352
            GIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GAL
Sbjct: 576  GIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGAL 633



 Score =  225 bits (573), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/135 (79%), Positives = 119/135 (88%)

Query: 354 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 413
           VEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 1   VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 60

Query: 414 KTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALS 473
           KTAETGYIQRRLIKAMESVMV+YD TVRNS+GQ++QLRYGEDGL G  VE+Q + T+  +
Sbjct: 61  KTAETGYIQRRLIKAMESVMVNYDGTVRNSLGQMVQLRYGEDGLDGMWVENQSMPTMKPN 120

Query: 474 HKKFEDKYRFDPSNE 488
              FE  +R D ++E
Sbjct: 121 DAVFERDFRTDLTDE 135



 Score =  176 bits (447), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 89/152 (58%), Positives = 110/152 (72%), Gaps = 30/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+NTVI ED+E+V+++YEMPDFD TR SPWLLRIELDRKRMTDKK
Sbjct: 374  LKKVTANTAIYYDPDPKNTVINEDEEWVSIFYEMPDFDTTRTSPWLLRIELDRKRMTDKK 433

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I++GFG+D++T                            I+ DDNAEKLV 
Sbjct: 434  LTMEMIADRIHSGFGNDVHT----------------------------IYTDDNAEKLVF 465

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI  + D K + +E+ VDKMEDD+FLRCIE
Sbjct: 466  RLRI--AGDDKGEGQEEQVDKMEDDVFLRCIE 495



 Score =  144 bits (363), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 67/91 (73%), Positives = 75/91 (82%)

Query: 1020 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 1079
            VEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 1    VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 60

Query: 1080 KTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            KTAET  +   L +   +  + YD   +N++
Sbjct: 61   KTAETGYIQRRLIKAMESVMVNYDGTVRNSL 91



 Score =  129 bits (324), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 100/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+GQ++QLRYGEDGL G  VE+Q + T+  +   FE
Sbjct: 66  GYIQRRLIKAMESVMVNYDGTVRNSLGQMVQLRYGEDGLDGMWVENQSMPTMKPNDAVFE 125

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++E  +++ ++EDV+R+L  S D I ++E                        
Sbjct: 126 RDFRTDLTDEVFMKKYYSEDVIRDLNESEDAIEKVE------------------------ 161

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +++  Q+
Sbjct: 162 -----------SEWTQLEEDRRLLRKIFPKGDAKIVLPCNLQRLMWNAQK 200



 Score =  100 bits (250), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 56/66 (84%), Gaps = 3/66 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 568 ICEIFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 627

Query: 830 QDTGAL 835
           Q+ GAL
Sbjct: 628 QEVGAL 633



 Score = 91.7 bits (226), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/51 (78%), Positives = 46/51 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 566
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GAL
Sbjct: 583 AIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGAL 633


>gi|309755528|gb|ADO86598.1| RNA polymerase II [Agmina hamata]
          Length = 241

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/287 (77%), Positives = 234/287 (81%), Gaps = 46/287 (16%)

Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGT 162
           GKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGT
Sbjct: 1   GKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 60

Query: 163 SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIK 222
           S+GSLLHIC LELGH+  GRFYGNIQTVVNNWLLLEG                       
Sbjct: 61  SAGSLLHICMLELGHDTAGRFYGNIQTVVNNWLLLEG----------------------- 97

Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
                                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAH
Sbjct: 98  -----------------------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 134

Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
           NM+LEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINI
Sbjct: 135 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 194

Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 389
           SQVIACVGQQNVEG+RIPFGFRKRTLPHFIKDDYGPESRGFVENSYL
Sbjct: 195 SQVIACVGQQNVEGRRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 241



 Score =  103 bits (258), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 45/47 (95%), Positives = 47/47 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 1055
            +QVIACVGQQNVEG+RIPFGFRKRTLPHFIKDDYGPESRGFVENSYL
Sbjct: 195  SQVIACVGQQNVEGRRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 241


>gi|170652036|gb|ACB21795.1| RNA polymerase II [Lestrimelitta sp. MP115]
          Length = 239

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/285 (77%), Positives = 233/285 (81%), Gaps = 46/285 (16%)

Query: 76  MNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQW 135
           MNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+W
Sbjct: 1   MNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKW 60

Query: 136 ISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWL 195
           ISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWL
Sbjct: 61  ISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWL 120

Query: 196 LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIA 255
           LLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG          
Sbjct: 121 LLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG---------- 170

Query: 256 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG 315
                                               NTLRQTFENQVNRILNDARDKTGG
Sbjct: 171 ------------------------------------NTLRQTFENQVNRILNDARDKTGG 194

Query: 316 SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP 360
           SAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP
Sbjct: 195 SAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIP 239


>gi|170652038|gb|ACB21796.1| RNA polymerase II [Geotrigona kraussi]
          Length = 240

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/286 (77%), Positives = 233/286 (81%), Gaps = 46/286 (16%)

Query: 77  NILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWI 136
           NILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WI
Sbjct: 1   NILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWI 60

Query: 137 SPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLL 196
           SPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLL
Sbjct: 61  SPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLL 120

Query: 197 LEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIAD 256
           LEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG           
Sbjct: 121 LEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG----------- 169

Query: 257 PQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGS 316
                                              NTLRQTFENQVNRILNDARDKTGGS
Sbjct: 170 -----------------------------------NTLRQTFENQVNRILNDARDKTGGS 194

Query: 317 AKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFG 362
           AKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP G
Sbjct: 195 AKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPNG 240


>gi|120561219|gb|ABM26995.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
          Length = 1018

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/410 (56%), Positives = 277/410 (67%), Gaps = 50/410 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           +MNILM++  WDG +P P ILKP+PLWTGKQ+ ++I+P N+N    HS HPDDE S    
Sbjct: 479 VMNILMWVADWDGVIPTPAILKPQPLWTGKQLVTMIVPKNINCITYHSAHPDDEKSD--- 535

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            ISPGDTKVVVE+G L+ GI+CKK++G S+G  +H+   E G EV  RF+   Q VVN W
Sbjct: 536 -ISPGDTKVVVENGELISGIVCKKTVGASNGGWVHVAMNEHGPEVAKRFFSGAQAVVNYW 594

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G                                               SIGIGDTI
Sbjct: 595 LLQHGF----------------------------------------------SIGIGDTI 608

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD +T   I   I  AK+ V E+I  A    LE  PG T+R+TFEN+VNR LN ARD +G
Sbjct: 609 ADGKTTEHITETINSAKQRVSEIILSAQQDTLECAPGMTIRETFENKVNRELNRARDHSG 668

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL E NN+K MVV+GSKGS INISQ+ ACVGQQNVEGKRIPFGF+ RTLPHF KD
Sbjct: 669 RSAEKSLKEENNVKQMVVSGSKGSFINISQMSACVGQQNVEGKRIPFGFKFRTLPHFSKD 728

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAVKTAETGYIQRRL+KA+E VMV
Sbjct: 729 DYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMV 788

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            YD TVRNS+G +IQ  YGEDG+ G  VE Q +D++ +++ KFE  Y+ D
Sbjct: 789 KYDGTVRNSLGNIIQFCYGEDGMDGCHVEKQTLDSIRMANDKFEKSYKVD 838



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 82/102 (80%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF+ RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 697  SQMSACVGQQNVEGKRIPFGFKFRTLPHFSKDDYGPESRGFVENSYLRGLTPQEFYFHAM 756

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 757  GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSL 798



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 93/170 (54%), Gaps = 34/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD TVRNS+G +IQ  YGEDG+ G  VE Q +D++ +++ KFE
Sbjct: 773 GYIQRRLVKALEDVMVKYDGTVRNSLGNIIQFCYGEDGMDGCHVEKQTLDSIRMANDKFE 832

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             Y+ D  ++    + F   VL                             FN  +L+++
Sbjct: 833 KSYKVDVMDK---EKGFKSGVLE----------------------------FN--ILKDV 859

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVIFILQ 760
            G+      L++E+ +LC+DR  LRE IF+SG+    LP NL  +++  Q
Sbjct: 860 EGNDSTQMMLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLRRLVWNAQ 909



 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 48/59 (81%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G D+LS +A  NATLL+QCL+RSTL TK V E++ L+++AFEW++GEIE RFQ AQV
Sbjct: 941  VRGSDKLSNEAQLNATLLYQCLLRSTLSTKRVLEDFHLNAQAFEWILGEIETRFQTAQV 999



 Score = 67.8 bits (164), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 29/137 (21%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            ++ I + P+QII+PQ+N+PVMGIVQDTL  +RK TKRD F+DK                 
Sbjct: 434  IKEICMVPKQIISPQSNKPVMGIVQDTLCGIRKFTKRDSFVDKALV-------------- 479

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKIN-----AGFG 1603
                   +N+   + D+D    +P +L+    +   T K+L    + + IN     +   
Sbjct: 480  -------MNILMWVADWDGVIPTPAILK---PQPLWTGKQLVTMIVPKNINCITYHSAHP 529

Query: 1604 DDLNTPLSPTDKKLTME 1620
            DD  + +SP D K+ +E
Sbjct: 530  DDEKSDISPGDTKVVVE 546


>gi|194460438|gb|ACF71893.1| RNA polymerase II [Aglae caerulea]
 gi|194460478|gb|ACF71913.1| RNA polymerase II [Euglossa mixta]
          Length = 236

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/282 (78%), Positives = 231/282 (81%), Gaps = 46/282 (16%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGI
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRKR
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 236



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKR 1032
            +QVIACVGQQNVEGKRIPFGFRKR
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKR 236


>gi|68300797|gb|AAY89341.1| RNA polymerase II largest subunit [Rhododendron macrophyllum]
          Length = 589

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/442 (52%), Positives = 291/442 (65%), Gaps = 61/442 (13%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKPKPLWTGKQVF+LIIP  +N+ RT + H + E +GP  
Sbjct: 68  FMNILMWWEDFDGKIPAPAILKPKPLWTGKQVFNLIIPKQINLLRTSAWHAESE-TGP-- 124

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            I+PGDT V +E G ++ G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 125 -ITPGDTHVRIEKGEVITGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQRLVNYW 183

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL                                                G SIGIGDTI
Sbjct: 184 LL----------------------------------------------QSGFSIGIGDTI 197

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD  T  +I   I KAK +V ++I+ A +  LE  PG T+ ++FEN+VN++LN ARD  G
Sbjct: 198 ADAATMEKINETISKAKNEVKDLIRAAQDKQLEAEPGRTMMESFENRVNQVLNKARDDAG 257

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KD
Sbjct: 258 SSAQKSLAESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKD 317

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 318 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 377

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRF--DPSNERPT- 491
            YD TVRNS+G +IQ  YGEDG+    +E QR+D++ +   +F+ K+R+  D  N  P+ 
Sbjct: 378 KYDGTVRNSLGDVIQFLYGEDGMDAVWIETQRLDSLKMKKSEFDKKFRYEIDDGNWNPSY 437

Query: 492 --------LRNVSSLRRVVNSK 505
                   L+ +   R V +++
Sbjct: 438 MLAEHVEDLKTIREFRNVFDAE 459



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 286  SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 345

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 346  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 387



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E QR+D++ +   +F+
Sbjct: 362 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQRLDSLKMKKSEFD 421

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+R++  +                 G+ +    L + + D  + ++ R +F+ +V    
Sbjct: 422 KKFRYEIDD-----------------GNWNPSYMLAEHVEDLKTIREFRNVFDAEV---- 460

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                         +KL  DR  L  EI ++G++N  +P NL  +I+  Q+
Sbjct: 461 --------------QKLEADRLQLGTEIATTGDNNWPMPVNLGRLIWNAQK 497



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 42/59 (71%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+D LS +A +NAT  F  L+RST  +K V   Y+L+ EAFEW++GEIE+RF Q+ V
Sbjct: 528  VPGDDLLSMEAQKNATTFFNILLRSTFASKRVLSEYKLTREAFEWVIGEIESRFLQSLV 586



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 29/137 (21%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            V  + + P+ I++PQ NRPVMGIVQDTL   RK+TKRD F++K                 
Sbjct: 23   VLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDV--------------- 67

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKIN-----AGFG 1603
                  F+N+     DFD    +P +L+    +   T K++    I ++IN     A   
Sbjct: 68   ------FMNILMWWEDFDGKIPAPAILK---PKPLWTGKQVFNLIIPKQINLLRTSAWHA 118

Query: 1604 DDLNTPLSPTDKKLTME 1620
            +    P++P D  + +E
Sbjct: 119  ESETGPITPGDTHVRIE 135


>gi|255579596|ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
           communis]
 gi|223529812|gb|EEF31747.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
           communis]
          Length = 1855

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/445 (53%), Positives = 292/445 (65%), Gaps = 61/445 (13%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++  MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ RT + H D E   
Sbjct: 556 KDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLIRTAAWHSDSERG- 614

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
               I+PGDT V +E G LL G +CKK+LGTS+GSL+H+ + E+G +   +F G+ Q +V
Sbjct: 615 ---VITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 671

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL  G                                               SIGIG
Sbjct: 672 NYWLLQNGF----------------------------------------------SIGIG 685

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD  T  +I   I  AK  V E+I+KA N +LEP PG T+ ++FEN+VN++LN ARD
Sbjct: 686 DTIADAATMEKINETISNAKNAVKELIRKAQNKELEPKPGRTMMESFENEVNQVLNRARD 745

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF
Sbjct: 746 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHF 805

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME 
Sbjct: 806 TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 865

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNER 489
           +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+   KY  D  N  
Sbjct: 866 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRVFKYELDDENWN 925

Query: 490 PT---------LRNVSSLRRVVNSK 505
           PT         L+N+  LR V +++
Sbjct: 926 PTYMYQDHIDDLKNIRELRDVFDAE 950



 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 236/513 (46%), Positives = 320/513 (62%), Gaps = 63/513 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS +A +NATL F  L+RSTL +K V E+YRL+ EAF+W++GEIE+RF Q+   
Sbjct: 1019 VPGDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVA 1078

Query: 1010 --QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
              ++I CV  Q++ G+                    P ++  +   + AG++        
Sbjct: 1079 PGEMIGCVAAQSI-GE--------------------PATQMTLNTFHYAGVSAKNVTLGV 1117

Query: 1068 MGGREGLIDTAVKTAETVNVLVFLF-----------------------QVTANTAIYYDP 1104
               RE  I    K  +T ++ +FL                         VT  T ++YDP
Sbjct: 1118 PRLRE--IINVAKKIKTPSLSIFLIPECNKTKERAKNVQCALEYTTLRSVTQATEVWYDP 1175

Query: 1105 DPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINA 1162
            DP +T+I ED +FV  YYEMPD    P +ISPWLLRIEL+R+ M DKKL M  I+EKIN 
Sbjct: 1176 DPMSTIIEEDVDFVKSYYEMPDEEISPEKISPWLLRIELNREMMVDKKLNMADIAEKINL 1235

Query: 1163 GFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMT 1222
             F DDL CIFNDDNAEKL+LRIRIMN +  K +  +++    EDD+FL+ IE+NML++M 
Sbjct: 1236 EFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMA 1292

Query: 1223 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1282
            L+GI  I KV++   Q+   K     E+  FK I +W+L+T+G +L+ V+   +VD  RT
Sbjct: 1293 LRGIPDINKVFIK--QSKVSK---FDENEGFKTIEEWMLDTEGVNLLAVMCNENVDARRT 1347

Query: 1283 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1342
             SN + E+ +VLGIEAVR+S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRH
Sbjct: 1348 TSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRH 1407

Query: 1343 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDA 1402
            GINR DTG LMRCSFEETVD+L+DAA +AEAD +RGV+ENI++GQL  +GTG   L L+ 
Sbjct: 1408 GINRNDTGPLMRCSFEETVDILLDAAVYAEADYLRGVTENIMLGQLAPIGTGDCALYLND 1467

Query: 1403 EKCKDGIEIPLATGMMGGPAGMFFGSAATPSSI 1435
            +  K+ IE+ L + M G   GM    A +P S+
Sbjct: 1468 DMLKNAIELQLPSYMDGLDFGM--TPARSPVSV 1498



 Score =  172 bits (436), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/184 (48%), Positives = 124/184 (67%), Gaps = 7/184 (3%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DT
Sbjct: 1355 VIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1414

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G LMRCSFEETVD+L+DAA +AEAD +RGV+ENI++GQL  +GTG   L L+ +  K+ I
Sbjct: 1415 GPLMRCSFEETVDILLDAAVYAEADYLRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAI 1474

Query: 893  EIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPG-FSP 951
            E+ L + M G   GM      TP+     +TP+     + + L+SP   ++P     FSP
Sbjct: 1475 ELQLPSYMDGLDFGM------TPARSPVSVTPYHDGMMSPSYLLSPSLRLSPTTDAQFSP 1528

Query: 952  SVAG 955
             V+G
Sbjct: 1529 YVSG 1532



 Score =  151 bits (381), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 777  SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 836

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 837  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 878



 Score =  131 bits (329), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 91/154 (59%), Gaps = 33/154 (21%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTD 1586
            L  VT  T ++YDPDP +T+I ED +FV  YYEMPD    P +ISPWLLRIEL+R+ M D
Sbjct: 1162 LRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEISPEKISPWLLRIELNREMMVD 1221

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL M                              I+EKIN  F DDL CIFNDDNAEKL
Sbjct: 1222 KKLNMAD----------------------------IAEKINLEFDDDLTCIFNDDNAEKL 1253

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            +LRIRIMN +  K +  +++    EDD+FL+ IE
Sbjct: 1254 ILRIRIMNDEAPKGELNDESA---EDDVFLKKIE 1284



 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETV
Sbjct: 1367 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1426

Query: 576  DVLMDAAAHAEADPMRGYIQRRLIKAMESVMVHYDCTV 613
            D+L+DAA +AEAD +RG  +  ++  +  +    DC +
Sbjct: 1427 DILLDAAVYAEADYLRGVTENIMLGQLAPIGTG-DCAL 1463



 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 853 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFD 912

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             ++++  +E      +N   + +     D I +L+       + ++LR +F+ +V    
Sbjct: 913 RVFKYELDDEN-----WNPTYMYQ-----DHIDDLK-------NIRELRDVFDAEV---- 951

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                         +KL  DR  L  EI ++G+S+  LP NL  +I+  Q+
Sbjct: 952 --------------QKLEADRYQLGTEIATTGDSSWPLPVNLRRLIWNAQK 988



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K
Sbjct: 514  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 556



 Score = 41.2 bits (95), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 38/49 (77%)

Query: 34  ILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           +LG +PK+ARPDWM++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 231 LLGFNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 279


>gi|170652147|gb|ACB21850.1| RNA polymerase II [Melipona sp. MP93]
          Length = 239

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/285 (77%), Positives = 233/285 (81%), Gaps = 46/285 (16%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 1   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 60

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 61  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 120

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 121 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 174

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 175 ----------------------------------------NTLRQTFENQVNRILNDARD 194

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEG 356
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEG
Sbjct: 195 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEG 239


>gi|83320478|gb|ABC02866.1| RNA polymerase II largest subunit, partial [Neocallimastix sp.
           GE13]
          Length = 813

 Score =  452 bits (1162), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/410 (56%), Positives = 276/410 (67%), Gaps = 51/410 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           +MNI+M++P WDG +P PCILKP PLWTGKQ+ SLIIP  +N+   HSTHPD+ED+    
Sbjct: 279 VMNIIMWVPDWDGVVPPPCILKPIPLWTGKQIMSLIIP-KINIVGYHSTHPDNEDTD--- 334

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            ISPGDTKV++E+G LL GILCKK++G+S   ++H+   E G E    F+   QTVVN W
Sbjct: 335 -ISPGDTKVLIENGELLAGILCKKTVGSSQNGIIHVVMNEYGPETAKLFFNGTQTVVNYW 393

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G                                               SIGIGDTI
Sbjct: 394 LLQNGF----------------------------------------------SIGIGDTI 407

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD  T   I  AI  AK+ V EVI +A    LE  PG T+R+TFE+ VNR LN ARD  G
Sbjct: 408 ADRNTMETINKAIASAKQAVNEVILQAQQCKLECQPGLTIRETFESLVNRHLNKARDSAG 467

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL EYNN+K MVV+GSKGS INISQ+ ACVGQQNVEGKRIPFGF+ RTLPHF KD
Sbjct: 468 ASAQKSLREYNNVKQMVVSGSKGSFINISQMTACVGQQNVEGKRIPFGFKYRTLPHFTKD 527

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D  PESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK++E V +
Sbjct: 528 DQSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSLEDVSI 587

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            YD TVRNS G +IQ  YGEDG+ G +VE Q+++++ +S  KFE  Y+ D
Sbjct: 588 KYDGTVRNSFGHIIQFCYGEDGMDGTSVEKQQLESIRMSDAKFEKFYKID 637



 Score =  151 bits (381), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/143 (55%), Positives = 94/143 (65%), Gaps = 8/143 (5%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF+ RTLPHF KDD  PESRGFVENSYL GLTP EFFFHAM
Sbjct: 496  SQMTACVGQQNVEGKRIPFGFKYRTLPHFTKDDQSPESRGFVENSYLRGLTPQEFFFHAM 555

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   + +I YD   +N+        +   Y     D
Sbjct: 556  GGREGLIDTAVKTAETGYIQRRLIKSLEDVSIKYDGTVRNSF----GHIIQFCYGEDGMD 611

Query: 1129 PTRISPWLLRIELDRKRMTDKKL 1151
             T +     + +L+  RM+D K 
Sbjct: 612  GTSVE----KQQLESIRMSDAKF 630



 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 35/171 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK++E V + YD TVRNS G +IQ  YGEDG+ G +VE Q+++++ +S  KFE
Sbjct: 572 GYIQRRLIKSLEDVSIKYDGTVRNSFGHIIQFCYGEDGMDGTSVEKQQLESIRMSDAKFE 631

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             Y+ D +++                                F  K     F+  +L +L
Sbjct: 632 KFYKIDLTDK-------------------------------DFGLKPKTLQFS--ILEDL 658

Query: 712 MGSGDVISE-LEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVIFILQ 760
               +V+ E L++E++ L EDR+  RE IF +G+S+  LP N+  +I+  Q
Sbjct: 659 AQQSNVVQEKLDEEYKSLQEDRKLFREFIFKNGDSSWPLPVNVRRLIWNAQ 709



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 34/139 (24%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            V+ I + P+QI++PQ N+PVMGIVQDTL  +RK TKRD FL +                 
Sbjct: 234  VQEICMVPKQIVSPQANKPVMGIVQDTLCGIRKFTKRDCFLTR----------------- 276

Query: 1549 IPEDQEFV-NVYYEMPDFDPTRISPWLLR-IELDRKRMTDKKLTMEAISEKIN-AGFG-- 1603
                 +FV N+   +PD+D     P +L+ I L     T K++ M  I  KIN  G+   
Sbjct: 277  -----DFVMNIIMWVPDWDGVVPPPCILKPIPL----WTGKQI-MSLIIPKINIVGYHST 326

Query: 1604 --DDLNTPLSPTDKKLTME 1620
              D+ +T +SP D K+ +E
Sbjct: 327  HPDNEDTDISPGDTKVLIE 345



 Score = 64.3 bits (155), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 42/59 (71%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+D+LSK+A  N+T+ F  L+++ L TK + E Y L+  AF+WL+GEIE RF QA V
Sbjct: 741  VRGDDKLSKEAQINSTINFFALIKTCLSTKRILEYYHLNKAAFDWLIGEIEVRFNQALV 799


>gi|157841386|gb|ABV83147.1| RNA polymerase 2 [Poikilolaimus regenfussi]
          Length = 620

 Score =  451 bits (1161), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/418 (56%), Positives = 289/418 (69%), Gaps = 46/418 (11%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D++SKQA  NATLL   L+RSTLC+K VAE +RL+ EAFEWL+GEIE RF QA   
Sbjct: 224  VGGDDRISKQAQFNATLLMNILLRSTLCSKQVAEKHRLNQEAFEWLIGEIETRFXQAIAQ 283

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 284  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINVSKQPK----- 336

Query: 1051 ENSYLAGLTPS-EFFFHAMGGR--EGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQ 1107
                    TPS   F      R  E   D   K   T      L +VTANTAIYYDPD  
Sbjct: 337  --------TPSLTVFLQGAAARDAEKAKDVLCKLEHTT-----LRKVTANTAIYYDPDAA 383

Query: 1108 NTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
             T I ED+E+V+++YEMPDFDP+R SPWLLR+ELDRKRMTDKKLTMEAI+++I+AGFG D
Sbjct: 384  RTCIEEDEEWVSIFYEMPDFDPSRCSPWLLRLELDRKRMTDKKLTMEAIADRIHAGFGGD 443

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIE 1227
            LN I+ DDNAEKLV R+RI N+D+ K + EE  VDKMEBD+FL C+E+NMLSD+TLZGIZ
Sbjct: 444  LNVIYTDDNAEKLVFRLRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGIZ 502

Query: 1228 AIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDI 1287
            +I KV MH P TD KKR IJT  G FK+I +WLL TDGT+L+KVLSE++V P+RT SNDI
Sbjct: 503  SIAKVCMHXPTTDDKKRTIJTADGSFKSIPEWLLXTDGTALLKVLSEQNVHPIRTTSNDI 562

Query: 1288 CEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1345
            CEIF+VLGIEAVRK++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMA TRHGIN
Sbjct: 563  CEIFEVLGIEAVRKAIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAXTRHGIN 620



 Score =  202 bits (514), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/127 (74%), Positives = 110/127 (86%)

Query: 363 FRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQ 422
           FR RTLPHFIKDDYGP+S+GFVENSYLAGLTP EFFFHAMGGREGLIDTAVKTAETGYIQ
Sbjct: 4   FRHRTLPHFIKDDYGPDSKGFVENSYLAGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQ 63

Query: 423 RRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYR 482
           RRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + ++  S+  FE +++
Sbjct: 64  RRLIKAMESVMVNYDGTVRNSMAQMVQLRYGEDGLDGMWVENQTMPSMKPSNALFEREFK 123

Query: 483 FDPSNER 489
            D  +ER
Sbjct: 124 LDLGDER 130



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 87/152 (57%), Positives = 106/152 (69%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPD   T I ED+E+V+++YEMPDFDP+R SPWLLR+ELDRKRMTDKK
Sbjct: 367  LRKVTANTAIYYDPDAARTCIEEDEEWVSIFYEMPDFDPSRCSPWLLRLELDRKRMTDKK 426

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L                            TMEAI+++I+AGFG DLN I+ DDNAEKLV 
Sbjct: 427  L----------------------------TMEAIADRIHAGFGGDLNVIYTDDNAEKLVF 458

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N+D+ K + EE  VDKMEBD+FL C+E
Sbjct: 459  RLRIANADNDKGESEEQ-VDKMEBDVFLXCVE 489



 Score =  133 bits (335), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/170 (42%), Positives = 101/170 (59%), Gaps = 36/170 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + ++  S+  FE
Sbjct: 60  GYIQRRLIKAMESVMVNYDGTVRNSMAQMVQLRYGEDGLDGMWVENQTMPSMKPSNALFE 119

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++ D  +ER LR+I+ ++V+REL                                   
Sbjct: 120 REFKLDLGDERMLRKIYTDEVVRELQ---------------------------------- 145

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
             + + + E+E EW +L EDR  LR+IF  G++ VVLPCNL  +I+  Q+
Sbjct: 146 --TPEALKEVESEWAQLEEDRRLLRKIFPKGDAKVVLPCNLQRLIWNAQK 193



 Score =  122 bits (305), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 18/144 (12%)

Query: 1029 FRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVL 1088
            FR RTLPHFIKDDYGP+S+GFVENSYLAGLTP EFFFHAMGGREGLIDTAVKTAET  + 
Sbjct: 4    FRHRTLPHFIKDDYGPDSKGFVENSYLAGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQ 63

Query: 1089 VFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY-------------EMPDFDPTR-ISP 1134
              L +   +  + YD   +N++     + V + Y              MP   P+  +  
Sbjct: 64   RRLIKAMESVMVNYDGTVRNSM----AQMVQLRYGEDGLDGMWVENQTMPSMKPSNALFE 119

Query: 1135 WLLRIELDRKRMTDKKLTMEAISE 1158
               +++L  +RM  K  T E + E
Sbjct: 120  REFKLDLGDERMLRKIYTDEVVRE 143



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 49/59 (83%), Gaps = 3/59 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
           +C+I  VL   +VRK++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMA TRHGIN
Sbjct: 562 ICEIFEVLGIEAVRKAIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAXTRHGIN 620



 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 39/44 (88%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 559
           ++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMA TRHGIN
Sbjct: 577 AIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAXTRHGIN 620


>gi|188532153|gb|ACD63088.1| RNA polymerase II largest subunit [Papaver orientale]
          Length = 1010

 Score =  451 bits (1160), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/442 (52%), Positives = 291/442 (65%), Gaps = 61/442 (13%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ RT + H ++E      
Sbjct: 478 FMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQINLLRTSAWHSENETG---- 533

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT+V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 534 FITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 593

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G SIGIGDTIAD  T  +I   I KAK +V ++I+ A    LEP PG         
Sbjct: 594 LLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGR-------- 645

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 646 --------------------------------------TMMESFENRVNQVLNKARDDAG 667

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KD
Sbjct: 668 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKD 727

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 728 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 787

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYR--FDPSNERPT- 491
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+  YR  FD  N  P  
Sbjct: 788 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTPNY 847

Query: 492 --------LRNVSSLRRVVNSK 505
                   L+N+   R V +++
Sbjct: 848 MQSDYVEDLKNIREFRHVFDAE 869



 Score =  151 bits (382), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 696  SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 755

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 756  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 797



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 772 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFD 831

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             YRF+          F++D         D + +L+       + ++ R +F+ +V    
Sbjct: 832 KVYRFE----------FDDDNWTPNYMQSDYVEDLK-------NIREFRHVFDAEV---- 870

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                         +KL +DR  L  EI ++G+++  +P NL  +I+  Q+
Sbjct: 871 --------------KKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQK 907



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F  L+RST  +K V + + L+ EAF+W++GE+E+RF Q+   
Sbjct: 938  VPGDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVA 997

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 998  PGEMIGCVAAQSI 1010



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 433  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 486



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 42/53 (79%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+ I+LG++PK+ARPDWM++ VLP+PP  VRP+V+M  SAR+++ + + L  +
Sbjct: 146 EDCILLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSARSEDDLTHQLAMI 198


>gi|409193803|gb|AFV31135.1| RNA polymerase II largest subunit [Amoeboaphelidium protococcarum]
          Length = 1767

 Score =  451 bits (1160), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/418 (54%), Positives = 283/418 (67%), Gaps = 50/418 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +E +M++ M++  WDG++PQP I+KP PLWTGKQ+FSLIIP   NM   HS HPD+E S 
Sbjct: 548 KEMVMSLCMWVRDWDGQLPQPAIIKPVPLWTGKQIFSLIIPPGTNMIGYHSQHPDNESSD 607

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
               ISPGDTKVV+  G L+ GI+CKK++GTS  SL+H+ + E G E    F+   Q VV
Sbjct: 608 ----ISPGDTKVVIYDGELVCGIICKKTVGTSQNSLIHVIWKEHGPEKTRNFFDGCQAVV 663

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWL                 +Y                              G SIGIG
Sbjct: 664 NNWLF----------------SY------------------------------GFSIGIG 677

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD QT   +   I  AK  V E I +AH   L+P+PG T++++FE++VN+ LN ARD
Sbjct: 678 DTIADAQTMQVVATTISNAKNKVTEYISQAHRNVLQPSPGMTIQESFESRVNQELNRARD 737

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G SA+KSL + NN+K MVVAGSKGS INISQ+ ACVGQQNVEG+RIPFGF+ RTLPHF
Sbjct: 738 IAGASAQKSLNDANNVKQMVVAGSKGSFINISQMTACVGQQNVEGRRIPFGFKYRTLPHF 797

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDD  PESRGFVENSYL GLTPSE FFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E 
Sbjct: 798 TKDDQSPESRGFVENSYLRGLTPSELFFHAMGGREGLIDTAVKTAETGYIQRRLVKALED 857

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           V V YDC+VRN++GQ++Q  YGEDG+ G ++E Q +D++ L+  KF+ KY+ D S+ +
Sbjct: 858 VSVGYDCSVRNALGQVLQFAYGEDGMDGTSMERQTLDSLRLNEDKFKMKYKIDVSDSK 915



 Score =  321 bits (823), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 186/456 (40%), Positives = 274/456 (60%), Gaps = 24/456 (5%)

Query: 956  EDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVIACV 1015
            +D+ + +  ENA+LLF+ L+RS L TK + + + L+  AF W++GEIE++F Q+ V    
Sbjct: 1016 QDKCTAELKENASLLFRILLRSVLATKRILQEFHLTKAAFSWILGEIESKFHQSMVAPNE 1075

Query: 1016 GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF---------VENSYLAGLTPSEFFFH 1066
                +  + I     + TL  F     G  S+           + N      TPS   + 
Sbjct: 1076 MVGTIAAQSIGEPATQMTLNTF--HYAGVSSKNVTLGVPRLKEIINVARNNKTPSTTIY- 1132

Query: 1067 AMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYE-MP 1125
             + G    +    K  +       L +V   T I+YDPD +NT I ED++ V  YY  M 
Sbjct: 1133 -LKGDYAKLPQKAKEVQAAIEYTTLRKVADRTEIWYDPDIENTRIVEDEDTVLAYYSLMV 1191

Query: 1126 DFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIR 1185
            D D +R SPW+LRI LDR+ M DK+   + I  ++   F +DL+   +D+NA   V+RIR
Sbjct: 1192 DEDFSRYSPWVLRIVLDRRMMLDKETKPQLIVSRLKEEFQNDLDICSSDENAPVPVIRIR 1251

Query: 1186 IMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRI 1245
            I+ +++   QD  D     E+D  LR +EA++L+ + L+GIE I +V+M       KK +
Sbjct: 1252 ILRNEEDVDQDALD-----EEDTILRKLEAHILNQIPLRGIEGINRVFMV-----EKKNV 1301

Query: 1246 IITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEK 1305
             + + G+++  ++W+LETDG +L  V++  +VD  RT+SN+I EI + LGIEA R ++ K
Sbjct: 1302 ALNDQGDYEQFSEWVLETDGINLKNVMTVDNVDAGRTYSNNIVEITETLGIEAGRAALLK 1361

Query: 1306 EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 1365
            E+  V++F G YVNYRHL++LCDVMT  G LMAITRHGINR +T AL R SFEETV++LM
Sbjct: 1362 ELRNVIEFDGSYVNYRHLSMLCDVMTKHGILMAITRHGINRAETSALARSSFEETVEILM 1421

Query: 1366 DAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1401
            +AAA AE D  +GV+ENIIMGQ+  +GTG F ++LD
Sbjct: 1422 EAAACAELDQCQGVAENIIMGQVAPLGTGNFKVMLD 1457



 Score =  149 bits (375), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 95/146 (65%), Gaps = 8/146 (5%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEG+RIPFGF+ RTLPHF KDD  PESRGFVENSYL GLTPSE FFHAM
Sbjct: 769  SQMTACVGQQNVEGRRIPFGFKYRTLPHFTKDDQSPESRGFVENSYLRGLTPSELFFHAM 828

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   + ++ YD   +N +     + +   Y     D
Sbjct: 829  GGREGLIDTAVKTAETGYIQRRLVKALEDVSVGYDCSVRNAL----GQVLQFAYGEDGMD 884

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTME 1154
             T +     R  LD  R+ + K  M+
Sbjct: 885  GTSME----RQTLDSLRLNEDKFKMK 906



 Score =  143 bits (361), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 88/210 (41%), Positives = 120/210 (57%), Gaps = 28/210 (13%)

Query: 767  NENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHG 826
            + N+  + + + + + R ++ KE+  V++F G YVNYRHL++LCDVMT  G LMAITRHG
Sbjct: 1340 SNNIVEITETLGIEAGRAALLKELRNVIEFDGSYVNYRHLSMLCDVMTKHGILMAITRHG 1399

Query: 827  INRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 886
            INR +T AL R SFEETV++LM+AAA AE D  +GV+ENIIMGQ+  +GTG F ++LD +
Sbjct: 1400 INRAETSALARSSFEETVEILMEAAACAELDQCQGVAENIIMGQVAPLGTGNFKVMLDEK 1459

Query: 887  KCKDGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAY------------NA 934
                      A  M  G        +ATP + +P + P  + TP Y            +A
Sbjct: 1460 SLN-------AMAMKAGIRARDKYGSATPGAFTPYVNP--EKTPFYPSGANGFANGGGDA 1510

Query: 935  LMSP----GAAMTPGGPGFSPSVAGEDQLS 960
            + SP    GA M     GFSP   G    S
Sbjct: 1511 MFSPIISAGAYMN---GGFSPVPIGASAAS 1537



 Score =  104 bits (260), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 59/74 (79%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            KE+  V++F G YVNYRHL++LCDVMT  G LMAITRHGINR +T AL R SFEETV++L
Sbjct: 1361 KELRNVIEFDGSYVNYRHLSMLCDVMTKHGILMAITRHGINRAETSALARSSFEETVEIL 1420

Query: 579  MDAAAHAEADPMRG 592
            M+AAA AE D  +G
Sbjct: 1421 MEAAACAELDQCQG 1434



 Score =  100 bits (248), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 34/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E V V YDC+VRN++GQ++Q  YGEDG+ G ++E Q +D++ L+  KF+
Sbjct: 845 GYIQRRLVKALEDVSVGYDCSVRNALGQVLQFAYGEDGMDGTSMERQTLDSLRLNEDKFK 904

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KY+ D S+ +                                 ++   +    ++L+E+
Sbjct: 905 MKYKIDVSDSK---------------------------------YQLSPKTVKPEILQEM 931

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVIFILQ 760
           + + ++   L++E+E+L  DR  LR+ IF  G++   LP N+  +I+  Q
Sbjct: 932 VQTPEIQLLLDEEFEQLSRDRALLRDHIFRKGDNQWPLPVNISRLIWNAQ 981



 Score = 76.3 bits (186), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 86/168 (51%), Gaps = 37/168 (22%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYE-MPDFDPTRISPWLLRIELDRKRMTDK 1587
            L KV   T I+YDPD +NT I ED++ V  YY  M D D +R SPW+LRI LDR+ M DK
Sbjct: 1156 LRKVADRTEIWYDPDIENTRIVEDEDTVLAYYSLMVDEDFSRYSPWVLRIVLDRRMMLDK 1215

Query: 1588 KLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLV 1647
            +                        T  +L +  + E+    F +DL+   +D+NA   V
Sbjct: 1216 E------------------------TKPQLIVSRLKEE----FQNDLDICSSDENAPVPV 1247

Query: 1648 LRIRIMNSD---DSKMQDEEDAV-DKME----DDMFLRCIEETDRSFV 1687
            +RIRI+ ++   D    DEED +  K+E    + + LR IE  +R F+
Sbjct: 1248 IRIRILRNEEDVDQDALDEEDTILRKLEAHILNQIPLRGIEGINRVFM 1295



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 33/43 (76%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +  I + PRQI++PQ NRPVMGIVQDTL  VRK TKRD FL K
Sbjct: 506  LSEICMVPRQIVSPQANRPVMGIVQDTLCGVRKFTKRDSFLTK 548


>gi|218200495|gb|EEC82922.1| hypothetical protein OsI_27866 [Oryza sativa Indica Group]
          Length = 1449

 Score =  451 bits (1159), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/421 (54%), Positives = 287/421 (68%), Gaps = 52/421 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++  MNILM+   +DGK+P P ILKP+P+WTGKQVF+LIIP  +N+ R  + H + E   
Sbjct: 526 KDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKPINLIRFSAWHSEAETG- 584

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
              +I+PGDT V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +V
Sbjct: 585 ---FITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 641

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL  G                                               SIGIG
Sbjct: 642 NYWLLQNGF----------------------------------------------SIGIG 655

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD  T ++I   I KAK+DV E+I++AH+  LE  PG T+ ++FEN+VN++LN ARD
Sbjct: 656 DTIADAATMVKINETISKAKDDVKELIKQAHDKQLEAEPGRTMMESFENRVNQVLNKARD 715

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF
Sbjct: 716 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 775

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME 
Sbjct: 776 TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 835

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRF--DPSNER 489
           +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F++ +R+  D  N R
Sbjct: 836 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWR 895

Query: 490 P 490
           P
Sbjct: 896 P 896



 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/495 (45%), Positives = 308/495 (62%), Gaps = 65/495 (13%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F  L+RST  +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 989  VPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVA 1048

Query: 1010 --QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
              ++I CV  Q++ G+                    P ++  +   + AG++        
Sbjct: 1049 PGEMIGCVAAQSI-GE--------------------PATQMTLNTFHYAGVSAKNVTLGV 1087

Query: 1068 MGGREGLIDTAVKTAETVNVLVFL-----------------------FQVTANTAIYYDP 1104
               RE  I    K  +T ++ V+L                         VT  T I+YDP
Sbjct: 1088 PRLRE--IINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDP 1145

Query: 1105 DPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINA 1162
            DP  T+I ED EFV  YYEMPD   DP +ISPWLLRIEL+R+ M DKKL+M  I+EKIN 
Sbjct: 1146 DPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINH 1205

Query: 1163 GFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMT 1222
             F DDL+CIFNDDNA+KL+LR+RI N +  K + ++++    EDD+FL+ IE+NML++M 
Sbjct: 1206 EFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESA---EDDVFLKKIESNMLTEMA 1262

Query: 1223 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1282
            L+GI  I KV++   + +        ++  FKA  +W+L T+G +L+ V+   DVD  RT
Sbjct: 1263 LRGIPDINKVFIKYGKVNK-----FEDNVGFKADNEWMLVTEGVNLLAVMCHEDVDATRT 1317

Query: 1283 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1342
             SN + E+ +VLGIEAVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRH
Sbjct: 1318 TSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRH 1377

Query: 1343 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDA 1402
            GINR DTG LMRCSFEETVD+L+DAA +AE+D +RGVSENI++GQL  +GTG FDL    
Sbjct: 1378 GINRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVSENIMLGQLAPIGTGGFDLSCFE 1437

Query: 1403 EKCKDGIEIPLATGM 1417
             + K G    L TG+
Sbjct: 1438 RRVKFG----LVTGL 1448



 Score =  154 bits (390), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/128 (57%), Positives = 97/128 (75%), Gaps = 4/128 (3%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DT
Sbjct: 1325 VIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1384

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G LMRCSFEETVD+L+DAA +AE+D +RGVSENI++GQL  +GTG FDL     + K G 
Sbjct: 1385 GPLMRCSFEETVDILLDAAVYAESDYLRGVSENIMLGQLAPIGTGGFDLSCFERRVKFG- 1443

Query: 893  EIPLATGM 900
               L TG+
Sbjct: 1444 ---LVTGL 1448



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 747  SQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 806

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 807  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 848



 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 93/154 (60%), Gaps = 33/154 (21%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTD 1586
            L  VT  T I+YDPDP  T+I ED EFV  YYEMPD   DP +ISPWLLRIEL+R+ M D
Sbjct: 1132 LRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMVD 1191

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+EKIN  F DDL+CIFNDDNA+KL
Sbjct: 1192 KKLS----------------------------MADIAEKINHEFDDDLSCIFNDDNADKL 1223

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            +LR+RI N +  K + ++++    EDD+FL+ IE
Sbjct: 1224 ILRVRITNDEAPKGEIQDESA---EDDVFLKKIE 1254



 Score =  121 bits (303), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/133 (48%), Positives = 81/133 (60%), Gaps = 16/133 (12%)

Query: 476  KFEDKYRFDPSNERPTL------------RNVSSLRRVVNSKPLLIGCWKLTSVEK---- 519
            KFED   F   NE   +             +V + R   N    +I    + +V +    
Sbjct: 1281 KFEDNVGFKADNEWMLVTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLD 1340

Query: 520  EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 579
            E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETVD+L+
Sbjct: 1341 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILL 1400

Query: 580  DAAAHAEADPMRG 592
            DAA +AE+D +RG
Sbjct: 1401 DAAVYAESDYLRG 1413



 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 823 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFD 882

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + +R++  +E                        L + + D  + ++ R +F        
Sbjct: 883 NVFRYELDDENWRPNYM-----------------LPEHVDDLKTIREFRNVF-------- 917

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                     E E +KL  DR  L  EI ++G++   +P NL  +I+  Q+
Sbjct: 918 ----------EAEVQKLEADRFQLGSEIATTGDNTWPMPVNLKRLIWNAQK 958



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD  ++K V  N  ++++
Sbjct: 484  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWE 537



 Score = 46.2 bits (108), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 42/53 (79%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+ ++LG++PKFARPDWM++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 197 EDCLLLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 249


>gi|188532149|gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron tulipifera]
          Length = 1010

 Score =  451 bits (1159), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/419 (54%), Positives = 285/419 (68%), Gaps = 52/419 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P +LKP+PLWTGKQVF+LIIP  +N+ RT + H + E      
Sbjct: 478 FMNILMWWEDFDGKIPAPAVLKPRPLWTGKQVFNLIIPKQINLIRTSAWHSEAETG---- 533

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT+V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 534 FITPGDTQVRIERGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 593

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G SIGIGDTIAD  T  +I   I KAK +V E+I+ A +  LE  PG         
Sbjct: 594 LLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQDKQLEAEPGR-------- 645

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 646 --------------------------------------TMMESFENRVNQVLNKARDDAG 667

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KD
Sbjct: 668 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKD 727

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 728 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 787

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNERPT 491
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  ++F++  +Y FD +N  P+
Sbjct: 788 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDNANWNPS 846



 Score =  151 bits (382), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 696  SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 755

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 756  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 797



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 92/173 (53%), Gaps = 40/173 (23%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  ++F+
Sbjct: 772 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFD 831

Query: 652 D--KYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLR 709
           +  +Y FD +N       +N   +            L + + D  + ++ R +F+ +V  
Sbjct: 832 NVFRYEFDNAN-------WNPSYM------------LPEHVEDLKTIREFRNVFDAEV-- 870

Query: 710 ELMGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                           +KL  DR  L  EI ++G+++  +P NL  +I+  Q+
Sbjct: 871 ----------------QKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQK 907



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 51/73 (69%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS +A +NATL F  L+RST  +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 938  VPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVA 997

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 998  PGEMIGCVAAQSI 1010



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 433  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 486



 Score = 44.7 bits (104), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 42/53 (79%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+ ++LG++PK+ARPDWM++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 146 EDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 198


>gi|120561241|gb|ABM27005.1| RNA polymerase II largest subunit, partial [Neocallimastix
           frontalis]
          Length = 1004

 Score =  451 bits (1159), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/410 (56%), Positives = 276/410 (67%), Gaps = 51/410 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           +MNI+M++P WDG +P PCILKP PLWTGKQ+ SLIIP  +N+   HSTHPD+ED+    
Sbjct: 465 VMNIIMWVPDWDGVVPPPCILKPIPLWTGKQIMSLIIP-KINIVGYHSTHPDNEDTD--- 520

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            ISPGDTKV++E+G LL GILCKK++G+S   ++H+   E G E    F+   QTVVN W
Sbjct: 521 -ISPGDTKVLIENGELLAGILCKKTVGSSQNGIIHVVMNEYGPETAKLFFNGTQTVVNYW 579

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G                                               SIGIGDTI
Sbjct: 580 LLQNGF----------------------------------------------SIGIGDTI 593

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD  T   I  AI  AK+ V EVI +A    LE  PG T+R+TFE+ VNR LN ARD  G
Sbjct: 594 ADRNTMETINKAIASAKQAVNEVILQAQQCKLECQPGLTIRETFESLVNRHLNKARDSAG 653

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL EYNN+K MVV+GSKGS INISQ+ ACVGQQNVEGKRIPFGF+ RTLPHF KD
Sbjct: 654 ASAQKSLREYNNVKQMVVSGSKGSFINISQMTACVGQQNVEGKRIPFGFKYRTLPHFTKD 713

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D  PESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK++E V +
Sbjct: 714 DQSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSLEDVSI 773

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            YD TVRNS G +IQ  YGEDG+ G +VE Q+++++ +S  KFE  Y+ D
Sbjct: 774 KYDGTVRNSFGHIIQFCYGEDGMDGTSVEKQQLESIRMSDAKFEKFYKID 823



 Score =  151 bits (381), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/143 (55%), Positives = 94/143 (65%), Gaps = 8/143 (5%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF+ RTLPHF KDD  PESRGFVENSYL GLTP EFFFHAM
Sbjct: 682  SQMTACVGQQNVEGKRIPFGFKYRTLPHFTKDDQSPESRGFVENSYLRGLTPQEFFFHAM 741

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   + +I YD   +N+        +   Y     D
Sbjct: 742  GGREGLIDTAVKTAETGYIQRRLIKSLEDVSIKYDGTVRNSF----GHIIQFCYGEDGMD 797

Query: 1129 PTRISPWLLRIELDRKRMTDKKL 1151
             T +     + +L+  RM+D K 
Sbjct: 798  GTSVE----KQQLESIRMSDAKF 816



 Score = 94.0 bits (232), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 111/228 (48%), Gaps = 58/228 (25%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIK++E V + YD TVRNS G +IQ  YGEDG+ G +VE Q+++++ +S  KFE
Sbjct: 758 GYIQRRLIKSLEDVSIKYDGTVRNSFGHIIQFCYGEDGMDGTSVEKQQLESIRMSDAKFE 817

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             Y+ D +++                                F  K     F+  +L +L
Sbjct: 818 KFYKIDLTDK-------------------------------DFGLKPKTLQFS--ILEDL 844

Query: 712 MGSGDVISE-LEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVIFILQRWKLWGNEN 769
               +V+ E L++E++ L EDR+  RE IF +G+S+  LP N+  +I        W  +N
Sbjct: 845 AQQSNVVQEKLDEEYKSLQEDRKLFREFIFKNGDSSWPLPVNVRRLI--------WNAQN 896

Query: 770 LRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 817
                  IF ++ RK  +         + LY+  +   LL  ++  +G
Sbjct: 897 -------IFSINKRKESD--------LHPLYICEKRDELLKRLVVVRG 929



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 40/62 (64%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            V+ I + P+QI++PQ N+PVMGIVQDTL  +RK TKRD FL +      I + PD    V
Sbjct: 420  VQEICMVPKQIVSPQANKPVMGIVQDTLCGIRKFTKRDCFLTRDFVMNIIMWVPDWDGVV 479

Query: 1549 IP 1550
             P
Sbjct: 480  PP 481



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 40/50 (80%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           E+ I +G++P +ARP+WML+TVLPVPP +VRP++ M G+AR ++ + + L
Sbjct: 137 EDCIDMGLNPNWARPEWMLITVLPVPPPAVRPSISMGGAARGEDDLTHKL 186



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 42/59 (71%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+D+LSK+A  N+T+ F  L+++ L TK + E Y L+  AF+WL+GEIE RF QA V
Sbjct: 927  VRGDDKLSKEAQINSTINFFALIKTCLSTKRILEYYHLNKAAFDWLIGEIEVRFNQALV 985


>gi|356605948|gb|AET25005.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 16
            KK-2011]
          Length = 613

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/418 (56%), Positives = 293/418 (70%), Gaps = 42/418 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+G D++SKQA  NATLL   L+RSTLCTK +  + +L++EAF+WL+GEIE RFQQA   
Sbjct: 215  VSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQ 274

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  +  Q+                 V  K +  G  R + + +  K    P    F
Sbjct: 275  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVF 334

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            +  +             A    E   D   K   T      L +VT NTAIYYDPDP+NT
Sbjct: 335  LTGA-------------AAKDPEKAKDVLCKLEHTT-----LKKVTCNTAIYYDPDPKNT 376

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            VI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKKLTME I+++I+ GFG+D++
Sbjct: 377  VIAEDEEWVSIFYEMPDHDISRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVH 436

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV R+RI   +D   + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI
Sbjct: 437  TIYTDDNAEKLVFRLRIA-GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAI 495

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYM+ P TD KKRIIIT  G FKA+ADW+LETDGT+L++VLSER +DPVRT SNDICE
Sbjct: 496  SKVYMNQPNTDDKKRIIITPEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICE 555

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 1347
            IF+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ
Sbjct: 556  IFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 613



 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/127 (72%), Positives = 107/127 (84%)

Query: 370 HFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 429
           HFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM
Sbjct: 1   HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 60

Query: 430 ESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           ESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE  +R D ++ +
Sbjct: 61  ESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNK 120

Query: 490 PTLRNVS 496
              +N S
Sbjct: 121 FLRKNYS 127



 Score =  167 bits (422), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 84/152 (55%), Positives = 105/152 (69%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKK
Sbjct: 358  LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDISRTSPWLLRIELDRKRMVDKK 417

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+ GFG+D++T                            I+ DDNAEKLV 
Sbjct: 418  LTMEMIADRIHGGFGNDVHT----------------------------IYTDDNAEKLVF 449

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   +D   + +E+ VDKMEDD+FLRCIE
Sbjct: 450  RLRIA-GEDKGAEGQEEQVDKMEDDVFLRCIE 480



 Score =  131 bits (329), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 100/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 50  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 109

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++ + LR+ ++EDV+RE+  S D IS +E                        
Sbjct: 110 RDFRMDLTDNKFLRKNYSEDVVREIQESHDGISLVE------------------------ 145

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 146 -----------SEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQK 184



 Score =  112 bits (279), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 60/75 (80%)

Query: 1036 HFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVT 1095
            HFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET  +   L +  
Sbjct: 1    HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 60

Query: 1096 ANTAIYYDPDPQNTV 1110
             +  + YD   +N++
Sbjct: 61   ESVMVNYDGTVRNSL 75



 Score = 94.7 bits (234), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/61 (72%), Positives = 52/61 (85%), Gaps = 3/61 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 553 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 612

Query: 830 Q 830
           Q
Sbjct: 613 Q 613



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 42/46 (91%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 561
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ
Sbjct: 568 AIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 613


>gi|188532147|gb|ACD63085.1| RNA polymerase II largest subunit [Illicium parviflorum]
          Length = 1013

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/414 (54%), Positives = 281/414 (67%), Gaps = 50/414 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ RT + H + E      
Sbjct: 481 FMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRTSAWHSESETG---- 536

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 537 FITPGDTHVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 596

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G SIGIGDTIAD  T  +I   I KAK +V E+I+ A    LE  PG         
Sbjct: 597 LLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQEKQLEAEPGR-------- 648

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 649 --------------------------------------TMMESFENRVNQVLNKARDDAG 670

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KD
Sbjct: 671 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKD 730

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 731 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 790

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  K+FE+ +R++  N+
Sbjct: 791 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFENVFRYEIDND 844



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 699  SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 758

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 759  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 800



 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  K+FE
Sbjct: 775 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFE 834

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + +R++  N+      +N   +            L + + D  + ++ R +F+ +V    
Sbjct: 835 NVFRYEIDNDN-----WNPSYM------------LPEHVKDLKTIREFRNVFDAEV---- 873

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                         +KL  DR  L  EI ++G+++  +P NL  +I+  Q+
Sbjct: 874 --------------QKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQK 910



 Score = 76.3 bits (186), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS +A +NATL F  L+RST  +K V + YRL+ EAFEW+VGEIE+RF Q+   
Sbjct: 941  VPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVVGEIESRFLQSLVA 1000

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 1001 PGEMIGCVAAQSI 1013



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 436  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 489



 Score = 44.7 bits (104), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 42/53 (79%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+ ++LG++PK+ARPDWM++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 149 EDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 201


>gi|188532141|gb|ACD63082.1| RNA polymerase II largest subunit [Beta vulgaris]
          Length = 1012

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/419 (54%), Positives = 284/419 (67%), Gaps = 52/419 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ RT + H + E      
Sbjct: 480 FMNILMWWEDFDGKIPAPTILKPRPLWTGKQVFNLIIPKQINLIRTSAWHSEAETG---- 535

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT+V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 536 FITPGDTQVRIERGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 595

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G SIGIGDTIAD  T  +I   I KAK +V E+I+ A    LE  PG         
Sbjct: 596 LLQNGFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGR-------- 647

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 648 --------------------------------------TMMESFENRVNQVLNKARDDAG 669

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KD
Sbjct: 670 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKD 729

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 730 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 789

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNERPT 491
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  ++F++  +Y FD +N  P+
Sbjct: 790 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDNANWNPS 848



 Score =  151 bits (382), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 698  SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 757

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 758  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 799



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 92/173 (53%), Gaps = 40/173 (23%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  ++F+
Sbjct: 774 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFD 833

Query: 652 D--KYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLR 709
           +  +Y FD +N       +N   +            L + + D  + ++ R +F+ +V  
Sbjct: 834 NVFRYEFDNAN-------WNPSYM------------LPEHVEDLKTIREFRNVFDAEV-- 872

Query: 710 ELMGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                           +KL  DR  L  EI ++G+++  +P NL  +I+  Q+
Sbjct: 873 ----------------QKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQK 909



 Score = 74.7 bits (182), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 51/73 (69%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS +A +NATL F  L+R+T  +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 940  VPGDDFLSMEAQKNATLFFNILLRTTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVA 999

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 1000 PGEMIGCVAAQSI 1012



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 435  VXELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 488



 Score = 41.2 bits (95), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 40/53 (75%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+  ++G +PK+ARPDWM++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 148 EDCQLMGFNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 200


>gi|33326213|gb|AAQ08516.1| RNA polymerase II largest subunit [Magnolia x soulangeana]
          Length = 1010

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/419 (54%), Positives = 284/419 (67%), Gaps = 52/419 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ RT + H + E      
Sbjct: 478 FMNILMWWEDFDGKIPAPTILKPRPLWTGKQVFNLIIPKQINLIRTSAWHSEAETG---- 533

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT+V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 534 FITPGDTQVRIERGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 593

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G SIGIGDTIAD  T  +I   I KAK +V E+I+ A    LE  PG         
Sbjct: 594 LLQNGFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGR-------- 645

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 646 --------------------------------------TMMESFENRVNQVLNKARDDAG 667

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KD
Sbjct: 668 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKD 727

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 728 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 787

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNERPT 491
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  ++F++  +Y FD +N  P+
Sbjct: 788 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDNANWNPS 846



 Score =  151 bits (382), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 696  SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 755

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 756  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 797



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 92/173 (53%), Gaps = 40/173 (23%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  ++F+
Sbjct: 772 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFD 831

Query: 652 D--KYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLR 709
           +  +Y FD +N       +N   +            L + + D  + ++ R +F+ +V  
Sbjct: 832 NVFRYEFDNAN-------WNPSYM------------LPEHVEDLKTIREFRNVFDAEV-- 870

Query: 710 ELMGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                           +KL  DR  L  EI ++G+++  +P NL  +I+  Q+
Sbjct: 871 ----------------QKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQK 907



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 51/73 (69%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS +A +NATL F  L+RST  +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 938  VPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVA 997

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 998  PGEMIGCVAAQSI 1010



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 433  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 486



 Score = 44.7 bits (104), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 42/53 (79%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+ ++LG++PK+ARPDWM++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 146 EDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 198


>gi|194460357|gb|ACF71853.1| RNA polymerase II [Euglossa asarophora]
 gi|194460440|gb|ACF71894.1| RNA polymerase II [Eulaema peruviana]
 gi|194460462|gb|ACF71905.1| RNA polymerase II [Euglossa villosa]
          Length = 235

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/281 (78%), Positives = 230/281 (81%), Gaps = 46/281 (16%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGI
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 365
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRK
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 235



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/23 (95%), Positives = 23/23 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRK 1031
            +QVIACVGQQNVEGKRIPFGFRK
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRK 235


>gi|188532143|gb|ACD63083.1| RNA polymerase II largest subunit [Ceratophyllum demersum]
          Length = 1010

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/419 (54%), Positives = 284/419 (67%), Gaps = 52/419 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ RT + H + E      
Sbjct: 478 FMNILMWWEDFDGKIPAPTILKPRPLWTGKQVFNLIIPKQINLIRTSAWHSEAETG---- 533

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT+V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 534 FITPGDTQVRIERGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 593

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G SIGIGDTIAD  T  +I   I KAK +V E+I+ A    LE  PG         
Sbjct: 594 LLQNGFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGR-------- 645

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 646 --------------------------------------TMMESFENRVNQVLNKARDDAG 667

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KD
Sbjct: 668 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKD 727

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 728 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 787

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNERPT 491
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  ++F++  +Y FD +N  P+
Sbjct: 788 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDNANWNPS 846



 Score =  151 bits (382), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 696  SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 755

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 756  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 797



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 92/173 (53%), Gaps = 40/173 (23%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  ++F+
Sbjct: 772 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFD 831

Query: 652 D--KYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLR 709
           +  +Y FD +N       +N   +            L + + D  + ++ R +F+ +V  
Sbjct: 832 NVFRYEFDNAN-------WNPSYM------------LPEHVEDLKTIREFRNVFDAEV-- 870

Query: 710 ELMGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                           +KL  DR  L  EI ++G+++  +P NL  +I+  Q+
Sbjct: 871 ----------------QKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQK 907



 Score = 74.7 bits (182), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 51/73 (69%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS +A +NATL F  L+R+T  +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 938  VPGDDFLSMEAQKNATLFFNILLRTTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVA 997

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 998  PGEMIGCVAAQSI 1010



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 433  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 486



 Score = 44.3 bits (103), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 41/53 (77%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+ ++LG +PK+ARPDWM++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 146 EDCVLLGFNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 198


>gi|170652153|gb|ACB21853.1| RNA polymerase II [Melipona grandis]
          Length = 237

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/283 (77%), Positives = 231/283 (81%), Gaps = 46/283 (16%)

Query: 76  MNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQW 135
           MNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+W
Sbjct: 1   MNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKW 60

Query: 136 ISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWL 195
           ISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWL
Sbjct: 61  ISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWL 120

Query: 196 LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIA 255
           LLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG          
Sbjct: 121 LLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG---------- 170

Query: 256 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG 315
                                               NTLRQTFENQVNRILNDARDKTGG
Sbjct: 171 ------------------------------------NTLRQTFENQVNRILNDARDKTGG 194

Query: 316 SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKR 358
           SAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKR
Sbjct: 195 SAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKR 237


>gi|157841480|gb|ABV83206.1| RNA polymerase 2 [Pellioditis mediterranea]
          Length = 618

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/410 (58%), Positives = 292/410 (71%), Gaps = 43/410 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAGED++SKQA  NATLL   L+RSTLC+K +A +Y+L+SEAFEWL+GE+E RF+QA  I
Sbjct: 229  VAGEDRISKQAQYNATLLMNILLRSTLCSKKMAVSYKLNSEAFEWLLGEVETRFKQA--I 286

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
            A  G+                 P   +    P ++  +   + AG++           +E
Sbjct: 287  AQPGEM--------------VGPLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKE 332

Query: 1073 GLIDTAVKTAETVNVLVFLF-----------------------QVTANTAIYYDPDPQNT 1109
              I    KT +T ++ VFL                        +VTANTAIYYDPD +NT
Sbjct: 333  --IINVSKTLKTPSLTVFLLGAAAKDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDVKNT 390

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
             I ED+E+V+++YEMPDFDP+R SPWLLR+ELDRKRMTDKKLTME I++KI+ GFGDDLN
Sbjct: 391  CIEEDEEWVSIFYEMPDFDPSRASPWLLRLELDRKRMTDKKLTMEQIADKIHQGFGDDLN 450

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNA+KLV R+RI N DD K  DEE  VDKMEDD+FLRCIEANMLSD+TLQGI +I
Sbjct: 451  VIYTDDNADKLVFRLRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGITSI 508

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYMH P TD KKR++IT  G FKAI +WLLETDGT+L+KVLSE+ +DP+RT SNDICE
Sbjct: 509  SKVYMHKPTTDDKKRVVITPEGGFKAIPEWLLETDGTALLKVLSEQHIDPIRTSSNDICE 568

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1339
            IF+VLGIEAVRK++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 569  IFEVLGIEAVRKAIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAI 618



 Score =  222 bits (565), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 104/141 (73%), Positives = 121/141 (85%)

Query: 356 GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 415
           GKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKT
Sbjct: 1   GKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKT 60

Query: 416 AETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHK 475
           AETGYIQRRLIKAMESVMV+YD TVRNS+ Q+IQLRYGEDGL G  VE+Q + T+  ++ 
Sbjct: 61  AETGYIQRRLIKAMESVMVNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQNMPTMKPTNA 120

Query: 476 KFEDKYRFDPSNERPTLRNVS 496
            FE  ++ D ++E+   +N +
Sbjct: 121 LFEKDFKLDITDEKMMRKNYT 141



 Score =  176 bits (447), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 107/152 (70%), Gaps = 30/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPD +NT I ED+E+V+++YEMPDFDP+R SPWLLR+ELDRKRMTDKK
Sbjct: 372  LRKVTANTAIYYDPDVKNTCIEEDEEWVSIFYEMPDFDPSRASPWLLRLELDRKRMTDKK 431

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L                            TME I++KI+ GFGDDLN I+ DDNA+KLV 
Sbjct: 432  L----------------------------TMEQIADKIHQGFGDDLNVIYTDDNADKLVF 463

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N DD K  DEE  VDKMEDD+FLRCIE
Sbjct: 464  RLRITNQDD-KGADEEQ-VDKMEDDVFLRCIE 493



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 73/89 (82%)

Query: 1022 GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 1081
            GKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKT
Sbjct: 1    GKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKT 60

Query: 1082 AETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            AET  +   L +   +  + YD   +N++
Sbjct: 61   AETGYIQRRLIKAMESVMVNYDGTVRNSL 89



 Score =  135 bits (339), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 102/170 (60%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q+IQLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 64  GYIQRRLIKAMESVMVNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQNMPTMKPTNALFE 123

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             ++ D ++E+ +R+ + EDV+R+L GS + + ++E                        
Sbjct: 124 KDFKLDITDEKMMRKNYTEDVIRDLQGSSEALKQIE------------------------ 159

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +EW +L  DR  LR+IF +G++ +VLPCNL  +I+  Q+
Sbjct: 160 -----------EEWHQLEHDRRLLRKIFPTGDAKIVLPCNLQRLIWNAQK 198



 Score = 78.6 bits (192), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 44/53 (83%), Gaps = 3/53 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 822
           +C+I  VL   +VRK++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 566 ICEIFEVLGIEAVRKAIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAI 618



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/38 (78%), Positives = 34/38 (89%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 553
           ++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 581 AIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAI 618


>gi|302794771|ref|XP_002979149.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
 gi|300152917|gb|EFJ19557.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
          Length = 1764

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/414 (55%), Positives = 279/414 (67%), Gaps = 50/414 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P I+KP+P+WTGKQ+FSLIIP  +NM RT + H D E      
Sbjct: 578 FMNILMWWEDFDGKVPTPAIVKPRPIWTGKQIFSLIIPKQINMVRTAAWHNDSETGDN-- 635

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
             SPGDT V +E G LL G LCKK+LGTSSGSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 636 --SPGDTMVRIEKGELLTGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 693

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G SIGIGDTIAD  T  +I   I KAK +V ++I+ A    LE  PG         
Sbjct: 694 LLQHGFSIGIGDTIADSATMEKINETIFKAKNEVKDLIKMAQEKQLESQPGR-------- 745

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD+ G
Sbjct: 746 --------------------------------------TMMESFENRVNQVLNRARDEAG 767

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NN+KAMV AGSKGS INISQ+IACVGQQNVEGKRIPFGF  RTLPHF KD
Sbjct: 768 SSAQKSLSESNNVKAMVTAGSKGSFINISQMIACVGQQNVEGKRIPFGFIDRTLPHFTKD 827

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAVKT+ETGYIQRRL+KAME VMV
Sbjct: 828 DYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVMV 887

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
            YD TVRNS+G +IQ  YGEDG+    +E QR+D++ +  K F+  Y+F+  NE
Sbjct: 888 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQRLDSIKMKKKDFDMTYKFEVDNE 941



 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 241/508 (47%), Positives = 315/508 (62%), Gaps = 59/508 (11%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F CL+RST  +K V + YRL+ EAFEW++GEIE RF Q+   
Sbjct: 1038 VPGDDPISIEAQKNATLFFNCLLRSTFASKRVLKEYRLTKEAFEWVIGEIETRFLQSLVA 1097

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              ++I CV  Q+                 V  K +  G  R R + +  K    P     
Sbjct: 1098 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP----- 1152

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV---FLFQVTANTAIYYDPDP 1106
               S    L P              +    + A+ V   +    L  VT  T I+YDPDP
Sbjct: 1153 ---SLYVHLKPE-------------VSKEKERAKNVQCALEYTTLRSVTQATEIWYDPDP 1196

Query: 1107 QNTVIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
             +T+I ED EFV  YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  I+EKIN  F
Sbjct: 1197 MSTIIEEDVEFVKSYYEMPDEDVTPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEF 1256

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
             DDL CIFNDDNAEKL+LR+RIMN D SK  +    VD+ +DD+FL+ IE+NML++M L+
Sbjct: 1257 VDDLTCIFNDDNAEKLILRVRIMNDDVSKGGE----VDQSDDDVFLKKIESNMLTEMALR 1312

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GI  I KV++        KR    E   FKA  +W+L+T+G +++ V+   DVD  RT S
Sbjct: 1313 GIPDIHKVFIR-----EHKRQRFDEHEGFKAETEWMLDTEGVNMLAVMCNEDVDATRTVS 1367

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            N + E+ +VLGIEAVR+++ KE+  V+ F G YVNYRHLA+LCDVMT +GHLMAITRHGI
Sbjct: 1368 NHLIEVIEVLGIEAVRQALLKELREVISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGI 1427

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NR DTG +MRCSFEETVD+L+DAA  AEAD +RGV+ENI++GQL  +GTG F LLL+ + 
Sbjct: 1428 NRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGDFGLLLNDKM 1487

Query: 1405 CKDGIEIPLATGMMGGPAGMFFGSAATP 1432
             +  IE+ L + M     G+  G   TP
Sbjct: 1488 LEHAIELQLPSYMETADFGL-GGVTGTP 1514



 Score =  183 bits (465), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 94/188 (50%), Positives = 129/188 (68%), Gaps = 6/188 (3%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+++ KE+  V+ F G YVNYRHLA+LCDVMT +GHLMAITRHGINR DT
Sbjct: 1373 VIEVLGIEAVRQALLKELREVISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRNDT 1432

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G +MRCSFEETVD+L+DAA  AEAD +RGV+ENI++GQL  +GTG F LLL+ +  +  I
Sbjct: 1433 GPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGDFGLLLNDKMLEHAI 1492

Query: 893  EIPLATGMMGGPAGMFFGSAATPSS---MSPQ--MTPWAQSTPAYNALMSPGAAMTPGGP 947
            E+ L + M     G+  G   TP     MSP   ++P  +++P  +A  SP  A +P  P
Sbjct: 1493 ELQLPSYMETADFGL-GGVTGTPHHEGMMSPSYLLSPNLRASPITDAQFSPYVAYSPASP 1551

Query: 948  GFSPSVAG 955
             +SPS  G
Sbjct: 1552 AYSPSSPG 1559



 Score =  156 bits (394), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/190 (47%), Positives = 110/190 (57%), Gaps = 11/190 (5%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+IACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 796  SQMIACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFYFHAM 855

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++     + +   Y     D
Sbjct: 856  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSL----GDVIQFLYGEDGMD 911

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN 1188
                  W+    LD  +M  K   M    E  N  +  D       D AE +     I N
Sbjct: 912  AV----WIESQRLDSIKMKKKDFDMTYKFEVDNENWNPDY---MASDCAEDIKTIQEIRN 964

Query: 1189 SDDSKMQDEE 1198
              D+++Q  E
Sbjct: 965  VFDAEVQKLE 974



 Score =  138 bits (347), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 94/154 (61%), Gaps = 34/154 (22%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTD 1586
            L  VT  T I+YDPDP +T+I ED EFV  YYEMPD D  P +ISPWLLRIEL+R+ M D
Sbjct: 1181 LRSVTQATEIWYDPDPMSTIIEEDVEFVKSYYEMPDEDVTPDKISPWLLRIELNREMMVD 1240

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+EKIN  F DDL CIFNDDNAEKL
Sbjct: 1241 KKLS----------------------------MADIAEKINLEFVDDLTCIFNDDNAEKL 1272

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            +LR+RIMN D SK  +    VD+ +DD+FL+ IE
Sbjct: 1273 ILRVRIMNDDVSKGGE----VDQSDDDVFLKKIE 1302



 Score =  123 bits (308), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 68/87 (78%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            KE+  V+ F G YVNYRHLA+LCDVMT +GHLMAITRHGINR DTG +MRCSFEETVD+L
Sbjct: 1388 KELREVISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1447

Query: 579  MDAAAHAEADPMRGYIQRRLIKAMESV 605
            +DAA  AEAD +RG  +  ++  +  +
Sbjct: 1448 LDAAVFAEADHLRGVTENIMLGQLAPI 1474



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 36/171 (21%)

Query: 592  GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
            GYIQRRL+KAME VMV YD TVRNS+G +IQ  YGEDG+    +E QR+D++ +  K F+
Sbjct: 872  GYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQRLDSIKMKKKDFD 931

Query: 652  DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
              Y+F+  NE      +N D +     + D   +++       + +++R +F+ +V    
Sbjct: 932  MTYKFEVDNEN-----WNPDYM-----ASDCAEDIK-------TIQEIRNVFDAEV---- 970

Query: 712  MGSGDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVIFILQR 761
                          +KL  DR+ L  EI +SG+    LP NL  +I+  Q+
Sbjct: 971  --------------QKLEADRKQLGLEIATSGDPQWPLPVNLKRLIWNAQK 1007



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPV+GIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 533  VSELMIVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWE 586



 Score = 48.5 bits (114), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 41/53 (77%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           EE  ILG+DP+FARPDWM++ VLP+PP  VRP+V+M  SAR+++ + + L  +
Sbjct: 246 EECRILGLDPQFARPDWMILQVLPIPPPPVRPSVMMDSSARSEDDLTHQLAMI 298


>gi|356605946|gb|AET25004.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 17
            KK-2011]
          Length = 623

 Score =  449 bits (1154), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/421 (55%), Positives = 293/421 (69%), Gaps = 42/421 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+G D++SKQA  NATLL   L+RSTLCTK +    +L++EAF+WL+GEIE RFQQA   
Sbjct: 222  VSGNDEISKQAQYNATLLMNILLRSTLCTKKLCTVKKLNTEAFDWLLGEIETRFQQAIAQ 281

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  +  Q+                 V  K +  G  R + + +  K    P    F
Sbjct: 282  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVF 341

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            +  +             A    E   D   K   T      L +VT NTAIYYDPDP+NT
Sbjct: 342  LTGA-------------AAKDPEKAKDVLCKLEHTT-----LKKVTCNTAIYYDPDPKNT 383

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            VI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKKLTME I+++I+ GFG+D++
Sbjct: 384  VITEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHNGFGNDVH 443

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV R+RI   +D     +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI
Sbjct: 444  TIYTDDNAEKLVFRLRIA-GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAI 502

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYM+ P TD KKRIIIT  G FK++ADW+LETDGT+L++VLSER +DPVRT SNDICE
Sbjct: 503  SKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICE 562

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 1349
            IF+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ 
Sbjct: 563  IFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEV 622

Query: 1350 G 1350
            G
Sbjct: 623  G 623



 Score =  205 bits (521), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 98/134 (73%), Positives = 113/134 (84%)

Query: 363 FRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQ 422
           FR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQ
Sbjct: 1   FRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQ 60

Query: 423 RRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYR 482
           RRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE  +R
Sbjct: 61  RRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNNAVFERDFR 120

Query: 483 FDPSNERPTLRNVS 496
            D ++ +   +N S
Sbjct: 121 MDLTDNKFLRKNYS 134



 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/152 (55%), Positives = 104/152 (68%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKK
Sbjct: 365  LKKVTCNTAIYYDPDPKNTVITEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKK 424

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+ GFG+D++T                            I+ DDNAEKLV 
Sbjct: 425  LTMEMIADRIHNGFGNDVHT----------------------------IYTDDNAEKLVF 456

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   +D     +E+ VDKMEDD+FLRCIE
Sbjct: 457  RLRIA-GEDKGADTQEEQVDKMEDDVFLRCIE 487



 Score =  128 bits (321), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/170 (42%), Positives = 100/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 57  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNNAVFE 116

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++ + LR+ ++EDV+RE+  S + IS +E                        
Sbjct: 117 RDFRMDLTDNKFLRKNYSEDVVREIQESEEGISLVE------------------------ 152

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 153 -----------SEWSQLEEDRRLLRKIFPRGDAKIVLPCNLDRLIWNAQK 191



 Score =  125 bits (313), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/82 (70%), Positives = 66/82 (80%)

Query: 1029 FRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVL 1088
            FR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET  + 
Sbjct: 1    FRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQ 60

Query: 1089 VFLFQVTANTAIYYDPDPQNTV 1110
              L +   +  + YD   +N++
Sbjct: 61   RRLIKAMESVMVNYDGTVRNSL 82



 Score = 97.4 bits (241), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 54/64 (84%), Gaps = 3/64 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 560 ICEIFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 619

Query: 830 QDTG 833
           Q+ G
Sbjct: 620 QEVG 623



 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/49 (77%), Positives = 44/49 (89%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTG 564
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ G
Sbjct: 575 AIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVG 623


>gi|242078217|ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
 gi|241940227|gb|EES13372.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
          Length = 1857

 Score =  448 bits (1153), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/418 (55%), Positives = 281/418 (67%), Gaps = 52/418 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+P+WTGKQVF+LIIP  +N+ R  + H ++E      
Sbjct: 558 FMNILMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSEEEKG---- 613

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT V +E G LL G LCKKSLGT +GSL+HI + E+G +   +F G+ Q +VN W
Sbjct: 614 FITPGDTMVRIEKGELLSGTLCKKSLGTGTGSLIHIIWEEVGPDAARKFLGHTQWLVNYW 673

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G SIGIGDTIAD  T   I   I KAK++V E+I+KAH   LE  PG         
Sbjct: 674 LLQNGFSIGIGDTIADASTMQTINDTICKAKDEVKELIKKAHEKQLEAEPGR-------- 725

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 726 --------------------------------------TMMESFENRVNQVLNKARDDAG 747

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KD
Sbjct: 748 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKD 807

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 808 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 867

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNERP 490
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F++  +Y  D  N RP
Sbjct: 868 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDNLFRYELDDENWRP 925



 Score =  411 bits (1056), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/517 (44%), Positives = 317/517 (61%), Gaps = 65/517 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F  L+RST  +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 1018 VPGDDPMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVA 1077

Query: 1010 --QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
              ++I CV  Q++ G+                    P ++  +   + AG++        
Sbjct: 1078 PGEMIGCVAAQSI-GE--------------------PATQMTLNTFHYAGVSAKNVTLGV 1116

Query: 1068 MGGREGLIDTAVKTAETVNVLVFL-----------------------FQVTANTAIYYDP 1104
               RE  I    K  +T ++ V+L                         VT  T I+YDP
Sbjct: 1117 PRLRE--IINVAKKIKTPSLSVYLKPEVNQKKELAKNVQCALEYTTLRSVTHATEIWYDP 1174

Query: 1105 DPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINA 1162
            DP  T+I ED EFV  YYEMPD   DP +ISPWLLRIEL+R+ M DKKL+M  I++KIN 
Sbjct: 1175 DPLGTIIEEDAEFVQSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIADKINR 1234

Query: 1163 GFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMT 1222
             F DDL+CIFNDDNA+KL+LRIRI N +  K + ++++    EDD+FL+ IE NML++M 
Sbjct: 1235 EFDDDLSCIFNDDNADKLILRIRITNDEAPKGEIQDESA---EDDVFLKKIEGNMLTEMA 1291

Query: 1223 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1282
            L+GI  I KV++     + K      + G FKA  +W+L+T+G +L+ V+   DVD  RT
Sbjct: 1292 LRGIPDINKVFIK----EGKVNTFYQDEG-FKAANEWMLDTEGVNLLAVMCHEDVDATRT 1346

Query: 1283 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1342
             SN + E+ +VLGIEAVR+S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRH
Sbjct: 1347 TSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRH 1406

Query: 1343 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDA 1402
            GINR DTG LMRCSFEETVD+L+DAA +AE+D +RGV+ENI++GQL  +GTG   L L+ 
Sbjct: 1407 GINRNDTGPLMRCSFEETVDILLDAAVYAESDHLRGVTENIMLGQLAPIGTGGCALYLND 1466

Query: 1403 EKCKDGIEIPLATGMMGGPAGMFFGSAATPSSIPGPP 1439
            +  +  IE+ L + +     G+ FG     S I G P
Sbjct: 1467 QMLQQAIELQLPSYV----EGLDFGMTPARSPISGTP 1499



 Score =  165 bits (417), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/172 (48%), Positives = 118/172 (68%), Gaps = 12/172 (6%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DT
Sbjct: 1354 VIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1413

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G LMRCSFEETVD+L+DAA +AE+D +RGV+ENI++GQL  +GTG   L L+ +  +  I
Sbjct: 1414 GPLMRCSFEETVDILLDAAVYAESDHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAI 1473

Query: 893  EIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTP 944
            E+ L + +     G+ FG       M+P  +P +  TP +  +MSP   ++P
Sbjct: 1474 ELQLPSYV----EGLDFG-------MTPARSPIS-GTPYHEGMMSPSYLLSP 1513



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/150 (54%), Positives = 95/150 (63%), Gaps = 22/150 (14%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 776  SQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 835

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYD----------------PDPQNTVIP 1112
            GGREGLIDTAVKT+ET  +   L +   +  + YD                 D  + V  
Sbjct: 836  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 895

Query: 1113 EDQEFVNVYYEMPDFDPTRISPWLLRIELD 1142
            E Q+  ++  + P+FD       L R ELD
Sbjct: 896  ESQKLDSLKMKKPEFDN------LFRYELD 919



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 93/154 (60%), Gaps = 33/154 (21%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTD 1586
            L  VT  T I+YDPDP  T+I ED EFV  YYEMPD   DP +ISPWLLRIEL+R+ M D
Sbjct: 1161 LRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDEDIDPDKISPWLLRIELNREMMVD 1220

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I++KIN  F DDL+CIFNDDNA+KL
Sbjct: 1221 KKLS----------------------------MADIADKINREFDDDLSCIFNDDNADKL 1252

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            +LRIRI N +  K + ++++    EDD+FL+ IE
Sbjct: 1253 ILRIRITNDEAPKGEIQDESA---EDDVFLKKIE 1283



 Score =  121 bits (304), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 69/90 (76%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETV
Sbjct: 1366 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1425

Query: 576  DVLMDAAAHAEADPMRGYIQRRLIKAMESV 605
            D+L+DAA +AE+D +RG  +  ++  +  +
Sbjct: 1426 DILLDAAVYAESDHLRGVTENIMLGQLAPI 1455



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 852 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFD 911

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + +R++  +E                        L + + D  + ++ R +F        
Sbjct: 912 NLFRYELDDENWRPNYM-----------------LPEHVDDLKTIREFRNVF-------- 946

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                     E E +KL  DR  L  EI ++G+++  +P NL  +I+  Q+
Sbjct: 947 ----------EAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQK 987



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 33/43 (76%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD  ++K
Sbjct: 513  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEK 555


>gi|83320460|gb|ABC02857.1| RNA polymerase II largest subunit, partial [Paraglomus occultum]
          Length = 847

 Score =  448 bits (1153), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/411 (57%), Positives = 272/411 (66%), Gaps = 51/411 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTR-THSTHPDDEDSGPY 133
           +MNILM++P WDG +P PCILKP P+WTGKQ+ S+IIP  VN     HSTHPD+E S   
Sbjct: 311 VMNILMWVPDWDGHIPIPCILKPVPMWTGKQILSIIIPKGVNSDNLRHSTHPDNETSD-- 368

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
             ISPGDTKV++E G LL GI+CKK++GTS   L+H+   ELG E    F    Q VVN 
Sbjct: 369 --ISPGDTKVLIEDGELLSGIVCKKTVGTSQQGLIHVIMQELGPEAAKNFLNGCQGVVNY 426

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL  G SIGIGDTIAD  T   I   I  AK  V E+I +A    LEP PG        
Sbjct: 427 WLLQNGFSIGIGDTIADKDTIESIAQTISNAKSRVQEIIIQAQQDKLEPQPGM------- 479

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
                                                  T+R+TFEN+VN+ LN ARD  
Sbjct: 480 ---------------------------------------TIRKTFENKVNKELNTARDAA 500

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA+KSL EYNN+K MV++GSKGS INISQ+ ACVGQQNVEGKRIPFGF+ RTLPHF K
Sbjct: 501 GRSAEKSLGEYNNVKQMVISGSKGSFINISQMSACVGQQNVEGKRIPFGFKYRTLPHFTK 560

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DD+ PESRGFVENSYL GLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E VM
Sbjct: 561 DDHSPESRGFVENSYLRGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVM 620

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           V YD TVRNS+G +I+  YGEDG  G  VE Q +D++ LS   FE KY  D
Sbjct: 621 VKYDGTVRNSLGDVIRFCYGEDGTDGCYVESQTLDSLRLSDADFEKKYYID 671



 Score =  151 bits (381), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 82/102 (80%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF+ RTLPHF KDD+ PESRGFVENSYL GLTP+EFFFHAM
Sbjct: 530  SQMSACVGQQNVEGKRIPFGFKYRTLPHFTKDDHSPESRGFVENSYLRGLTPTEFFFHAM 589

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 590  GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSL 631



 Score = 96.3 bits (238), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 88/166 (53%), Gaps = 33/166 (19%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD TVRNS+G +I+  YGEDG  G  VE Q +D++ LS   FE
Sbjct: 606 GYIQRRLVKALEDVMVKYDGTVRNSLGDVIRFCYGEDGTDGCYVESQTLDSLRLSDADFE 665

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KY  D      LR+                  +L   +VD   W    RI ++      
Sbjct: 666 KKYYID------LRK----------------DPDLNPSLVDPRVWD---RISDD------ 694

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVI 756
            GS      L++E+ KL EDR+ LRE IF +G++   LP N+  +I
Sbjct: 695 -GSDKYQQHLDQEYSKLLEDRKILREFIFPNGDNKWPLPVNIKRLI 739



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V GED++S +A  N+TLLFQ L+RST  T+ + E Y L ++AF+W++GEIE RFQ++ V
Sbjct: 775  VNGEDKISIEAQRNSTLLFQILLRSTPATRRLIEEYHLDTQAFKWILGEIEERFQRSLV 833



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 38/52 (73%)

Query: 1492 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPD 1543
            I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL +      + + PD
Sbjct: 269  ICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFLTRDLVMNILMWVPD 320


>gi|33326205|gb|AAQ08512.1| RNA polymerase II largest subunit [Cycas revoluta]
          Length = 1013

 Score =  448 bits (1152), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/414 (54%), Positives = 280/414 (67%), Gaps = 50/414 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ R  + H + E      
Sbjct: 481 FMNILMWWENFDGKIPSPTILKPRPLWTGKQVFNLIIPRQINLIRYSAWHSESETG---- 536

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT V +E G +L G LCKK+LGTSSGSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 537 FITPGDTCVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 596

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL +G SIGIGDTIAD  T   I   I KAK +V ++IQ AH   LE  PG         
Sbjct: 597 LLQQGFSIGIGDTIADAATMETINETISKAKAEVNQLIQLAHQKALEAEPGR-------- 648

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 649 --------------------------------------TMMESFENRVNQVLNKARDDAG 670

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  R+LPHF +D
Sbjct: 671 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFFGRSLPHFTRD 730

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 731 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 790

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +FE+ YR++  NE
Sbjct: 791 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRSEFENVYRYEIDNE 844



 Score =  150 bits (380), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  R+LPHF +DDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 699  SQMTACVGQQNVEGKRIPFGFFGRSLPHFTRDDYGPESRGFVENSYLRGLTPQEFFFHAM 758

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 759  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 800



 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +FE
Sbjct: 775 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRSEFE 834

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + YR++  NE      +N   +            L + + D  + ++ + +F+  V    
Sbjct: 835 NVYRYEIDNEN-----WNPSYM------------LPEHVEDLKTIREFQNVFDAQV---- 873

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                         +KL  DR  L  EI  SG+++  +P NL  +I+  Q+
Sbjct: 874 --------------QKLEADRRQLGTEIAPSGDNSWPMPVNLKRLIWNAQK 910



 Score = 74.7 bits (182), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 51/73 (69%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F  L+RST  +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 941  VPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVA 1000

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 1001 PGEMIGCVAAQSI 1013



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 436  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 489



 Score = 41.6 bits (96), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 41/53 (77%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+  +LG++PK+ARPDWM++ VLP+PP  VRP+V+M  ++R+++ + + L  +
Sbjct: 149 EDCQMLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTTSRSEDDLTHQLAMI 201


>gi|157841366|gb|ABV83137.1| RNA polymerase 2 [Rhabditis rainai]
          Length = 618

 Score =  448 bits (1152), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/402 (58%), Positives = 285/402 (70%), Gaps = 16/402 (3%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
            V+G+D +SKQA  NATLL   L+RSTLC+K +A  Y+L+SEAFEWL+GE+E RF+QA  Q
Sbjct: 223  VSGDDSISKQAQYNATLLMNILLRSTLCSKRMASMYKLNSEAFEWLLGEVETRFKQAIAQ 282

Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-----VENSYLAGLTPSEFFF 1065
                VG    +    P         HF        + G      + N      TPS   F
Sbjct: 283  PGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLSVF 342

Query: 1066 ---HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
                A    E   D   K   T      L +VT+NTAIYYDPD +NT I ED ++V ++Y
Sbjct: 343  LTGAAAKDAEKCKDVLCKLEHTT-----LRKVTSNTAIYYDPDVKNTCIVEDDDWVQIFY 397

Query: 1123 EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1182
            EMPDFDP+R SPWLLR+ELD KRMTDKKLTME I+++I+ GFGDDLN I+ DDNA+KLV 
Sbjct: 398  EMPDFDPSRCSPWLLRLELDHKRMTDKKLTMEKIADRIHHGFGDDLNVIYTDDNADKLVF 457

Query: 1183 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1242
            R+RI N DD K   EE+ VDKMEDD+FLRCIE+NMLSD+TLQGI +I KVYMH P TD K
Sbjct: 458  RLRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDK 516

Query: 1243 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1302
            KR+IIT  G+F+ I+DW+LETDGT+L++VLSE  +D VRT SNDICEIF+VLGIEAVRKS
Sbjct: 517  KRVIITPEGDFQYISDWILETDGTALLRVLSEPSIDAVRTTSNDICEIFEVLGIEAVRKS 576

Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            +E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 577  IEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 618



 Score =  196 bits (498), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/126 (73%), Positives = 109/126 (86%)

Query: 364 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 423
           R R+LPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQR
Sbjct: 1   RHRSLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTAETGYIQR 60

Query: 424 RLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRF 483
           RLIKAMESVMV+YD TVRNS+  ++QLRYGEDGL G  VE+Q + T+  ++  FE  ++ 
Sbjct: 61  RLIKAMESVMVNYDGTVRNSLAXMVQLRYGEDGLDGMWVENQGMPTMKPNNVVFERNFKL 120

Query: 484 DPSNER 489
           D ++E+
Sbjct: 121 DITDEK 126



 Score =  170 bits (430), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 87/152 (57%), Positives = 104/152 (68%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT+NTAIYYDPD +NT I ED ++V ++YEMPDFDP+R SPWLLR+ELD KRMTDKK
Sbjct: 366  LRKVTSNTAIYYDPDVKNTCIVEDDDWVQIFYEMPDFDPSRCSPWLLRLELDHKRMTDKK 425

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L                            TME I+++I+ GFGDDLN I+ DDNA+KLV 
Sbjct: 426  L----------------------------TMEKIADRIHHGFGDDLNVIYTDDNADKLVF 457

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N DD K   EE+ VDKMEDD+FLRCIE
Sbjct: 458  RLRIANVDD-KSGAEEEQVDKMEDDVFLRCIE 488



 Score =  131 bits (329), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 98/170 (57%), Gaps = 33/170 (19%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+  ++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 56  GYIQRRLIKAMESVMVNYDGTVRNSLAXMVQLRYGEDGLDGMWVENQGMPTMKPNNVVFE 115

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             ++ D ++E+ +++ F EDV+ +L G                                 
Sbjct: 116 RNFKLDITDEKTMKKFFTEDVIHDLQGP-------------------------------- 143

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
             S D I  +E EW +L EDR  LR+IF +G + VVLPCNL  +I+  Q+
Sbjct: 144 -DSKDAIETVEAEWAQLEEDRRLLRKIFPTGNAKVVLPCNLQRLIWNXQK 192



 Score =  119 bits (299), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/81 (67%), Positives = 65/81 (80%)

Query: 1030 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV 1089
            R R+LPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAET  +  
Sbjct: 1    RHRSLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTAETGYIQR 60

Query: 1090 FLFQVTANTAIYYDPDPQNTV 1110
             L +   +  + YD   +N++
Sbjct: 61   RLIKAMESVMVNYDGTVRNSL 81



 Score = 90.9 bits (224), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/58 (74%), Positives = 49/58 (84%), Gaps = 3/58 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 827
           +C+I  VL   +VRKS+E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 561 ICEIFEVLGIEAVRKSIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 618



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/43 (83%), Positives = 39/43 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 558
           S+E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 576 SIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 618


>gi|48869087|gb|AAT47141.1| RNA polymerase 2 [Prodontorhabditis wirthi]
          Length = 630

 Score =  448 bits (1152), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/415 (57%), Positives = 288/415 (69%), Gaps = 41/415 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V GED++SKQA  NATLL   L+RSTLC+K +A  Y+L SEAF+WL+GEIENRFQ A  I
Sbjct: 234  VNGEDRISKQAQYNATLLTNILIRSTLCSKKMASTYKLDSEAFDWLLGEIENRFQSA--I 291

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
            A  G+       +      ++L         P ++  +   + AG++           +E
Sbjct: 292  AQPGE-------MVGALAAQSLGE-------PATQMTLNTFHYAGVSAKNVTLGVPRLKE 337

Query: 1073 GLIDTAVKTAETVNVLVFL-----------------------FQVTANTAIYYDPDPQNT 1109
              I    KT +T ++ VFL                        +VTANTAIYYDPDP  T
Sbjct: 338  --IINVSKTLKTPSLTVFLQEDVAKDRDKVKEVLCRLEHTTLRKVTANTAIYYDPDPTGT 395

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
             I ED+E+V ++YEMPD DP+R SPWLLRIELD++R+TDKKL++E I+ KI+AGFGDDLN
Sbjct: 396  CIAEDEEWVPIFYEMPDHDPSRCSPWLLRIELDKRRITDKKLSLEHIANKIHAGFGDDLN 455

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLVLR+RI    D K    E+ VDKMEDD FLRCIEANMLSD++L GI AI
Sbjct: 456  VIYTDDNAEKLVLRLRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAI 515

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
            GKVYMH P TD KKR  IT  G  KAIADWLLETDGT+L+KVLSERD+D +RT SNDICE
Sbjct: 516  GKVYMHKPNTDDKKRFXITREGGSKAIADWLLETDGTALLKVLSERDIDQIRTSSNDICE 575

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            IF+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 576  IFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 630



 Score =  226 bits (575), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 106/139 (76%), Positives = 122/139 (87%)

Query: 351 QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 410
           QQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLT +EFFFHAMGGREGLID
Sbjct: 1   QQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTAAEFFFHAMGGREGLID 60

Query: 411 TAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTV 470
           TAVKTAETGYIQRRLIKAMESVMV+YD TVRN++GQ+IQLRYGEDGL G  VE+  + T+
Sbjct: 61  TAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAIGQMIQLRYGEDGLDGMWVENPNMPTM 120

Query: 471 ALSHKKFEDKYRFDPSNER 489
             ++  FE +++ D  +E+
Sbjct: 121 KPTNAVFEREFKLDLEDEK 139



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/152 (56%), Positives = 101/152 (66%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP  T I ED+E+V ++YEMPD DP+R SPWLLRIELD++R+TDKK
Sbjct: 377  LRKVTANTAIYYDPDPTGTCIAEDEEWVPIFYEMPDHDPSRCSPWLLRIELDKRRITDKK 436

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L++E I+ KI+AGFG                            DDLN I+ DDNAEKLVL
Sbjct: 437  LSLEHIANKIHAGFG----------------------------DDLNVIYTDDNAEKLVL 468

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI    D K    E+ VDKMEDD FLRCIE
Sbjct: 469  RLRIAGGSDDKGDVGEEQVDKMEDDTFLRCIE 500



 Score =  146 bits (369), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 68/94 (72%), Positives = 76/94 (80%)

Query: 1017 QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 1076
            QQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLT +EFFFHAMGGREGLID
Sbjct: 1    QQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTAAEFFFHAMGGREGLID 60

Query: 1077 TAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            TAVKTAET  +   L +   +  + YD   +N +
Sbjct: 61   TAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAI 94



 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 101/170 (59%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRN++GQ+IQLRYGEDGL G  VE+  + T+  ++  FE
Sbjct: 69  GYIQRRLIKAMESVMVNYDGTVRNAIGQMIQLRYGEDGLDGMWVENPNMPTMKPTNAVFE 128

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++ D  +E+ L++ + EDV+R+L+ S +   E                          
Sbjct: 129 REFKLDLEDEKALKKYYTEDVVRDLVSSTEAFRE-------------------------- 162

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                    +E EW +L EDR+ LR+IF +G + +VLPCNL  +I+  Q+
Sbjct: 163 ---------VEAEWAQLEEDRQLLRKIFPTGNAKIVLPCNLQRLIWNAQK 203



 Score = 87.8 bits (216), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 49/58 (84%), Gaps = 3/58 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 827
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 573 ICEIFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 630



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 39/43 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 558
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 588 AIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 630


>gi|157841378|gb|ABV83143.1| RNA polymerase 2 [Mesorhabditis longespiculosa]
          Length = 623

 Score =  447 bits (1151), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/400 (58%), Positives = 290/400 (72%), Gaps = 21/400 (5%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V+GED++S+QA  NATLL   L+RSTLC+K +AE ++L+ E FEWL+GEIE+RFQQA V 
Sbjct: 232  VSGEDRISQQAQYNATLLMNILLRSTLCSKQMAEKHKLNQEGFEWLLGEIEHRFQQAIVX 291

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLP--HFIKDDYGPESRGF-----VENSYLAGLTPSEFFF 1065
                   +  + +     + TL   HF        + G      + N   +  TPS   F
Sbjct: 292  XXXXXGXLAXQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVF 351

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L  ++ K AE   +VL       L +VTANTAIYYDPDP+NTVI ED+E+V+
Sbjct: 352  --------LTGSSAKDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDPKNTVIEEDEEWVS 403

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            +YYEMPDFDP+R SPWLLRIELD+KRM DKKLTMEAISE+I   FG+DLN I+ DDNA+ 
Sbjct: 404  MYYEMPDFDPSRCSPWLLRIELDKKRMCDKKLTMEAISERIQQAFGEDLNVIYTDDNADS 463

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LV RIRI + D+ K+  EE+ VDKMEDD FLR +E NMLSD+TLQGIE I KVYMH P T
Sbjct: 464  LVFRIRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNT 523

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            D KKRI++T  G+FKAI +WLLETDGT+L++VLS+ +VDPVRT SNDICEIF+VLGIEAV
Sbjct: 524  DDKKRIVVTPEGDFKAIPEWLLETDGTALLQVLSQANVDPVRTTSNDICEIFEVLGIEAV 583

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1339
            RK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 584  RKAIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAI 623



 Score =  228 bits (581), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/151 (72%), Positives = 125/151 (82%), Gaps = 7/151 (4%)

Query: 353 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 412
           NVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 1   NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPTEFFFHAMGGREGLIDTA 60

Query: 413 VKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVAL 472
           VKTAETGYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE Q + T+ L
Sbjct: 61  VKTAETGYIQRRLIKAMESVMVNYDGTVRNSIAQMVQLRYGEDGLDGTWVEGQTMPTMKL 120

Query: 473 SHKKFEDKYRFDPSNERPTLRNVSSLRRVVN 503
            ++ FE +++ D       L +  +L +V N
Sbjct: 121 QNRVFEKQFKLD-------LGDAKALHKVYN 144



 Score =  179 bits (453), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/153 (58%), Positives = 106/153 (69%), Gaps = 28/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+NTVI ED+E+V++YYEMPDFDP+R SPWLLRIELD+KRM DKK
Sbjct: 375  LRKVTANTAIYYDPDPKNTVIEEDEEWVSMYYEMPDFDPSRCSPWLLRIELDKKRMCDKK 434

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LT                            MEAISE+I   FG+DLN I+ DDNA+ LV 
Sbjct: 435  LT----------------------------MEAISERIQQAFGEDLNVIYTDDNADSLVF 466

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEE 1681
            RIRI + D+ K+  EE+ VDKMEDD FLR +E+
Sbjct: 467  RIRITSQDNDKVDTEEEQVDKMEDDAFLRALEQ 499



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/192 (44%), Positives = 115/192 (59%), Gaps = 18/192 (9%)

Query: 1019 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 1078
            NVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 1    NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPTEFFFHAMGGREGLIDTA 60

Query: 1079 VKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLR 1138
            VKTAET  +   L +   +  + YD   +N++     + V + Y     D T +    + 
Sbjct: 61   VKTAETGYIQRRLIKAMESVMVNYDGTVRNSI----AQMVQLRYGEDGLDGTWVEGQTMP 116

Query: 1139 IELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEE 1198
                + R+ +K+        K++ G    L+ ++N D        +R +    + +++ E
Sbjct: 117  TMKLQNRVFEKQF-------KLDLGDAKALHKVYNPDI-------VRELTGSTTALKEAE 162

Query: 1199 DAVDKMEDDMFL 1210
            D   ++EDD  L
Sbjct: 163  DEWQRLEDDRRL 174



 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 99/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE Q + T+ L ++ FE
Sbjct: 67  GYIQRRLIKAMESVMVNYDGTVRNSIAQMVQLRYGEDGLDGTWVEGQTMPTMKLQNRVFE 126

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++ D  + + L +++N D++REL GS   +                            
Sbjct: 127 KQFKLDLGDAKALHKVYNPDIVRELTGSTTAL---------------------------- 158

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                   E E EW++L +DR  LR+IF  G++ VVLPCNL  +I+  Q+
Sbjct: 159 -------KEAEDEWQRLEDDRRLLRKIFPRGDNRVVLPCNLQRLIWNAQK 201



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 44/53 (83%), Gaps = 3/53 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 822
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 571 ICEIFEVLGIEAVRKAIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAI 623



 Score = 67.4 bits (163), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 34/38 (89%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 553
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 586 AIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAI 623


>gi|194460412|gb|ACF71880.1| RNA polymerase II [Euglossa maculilabris]
          Length = 242

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/288 (76%), Positives = 230/288 (79%), Gaps = 46/288 (15%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGK PQPCILKP PLWTGKQ+FSLIIP NVNM RTHSTHPD+ED GPY+WISPG TKV+
Sbjct: 1   WDGKXPQPCILKPXPLWTGKQIFSLIIPSNVNMIRTHSTHPDEEDDGPYKWISPGXTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNI TV+NNWLLLEGHSIGI
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIXTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKED IEVIQK HNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDGIEVIQKXHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
           NNLKAMVV+GSKGSNINISQVIACVGQQN+EGKRIPFGFRKRTLPHFI
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNLEGKRIPFGFRKRTLPHFI 242



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/30 (93%), Positives = 30/30 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFI 1038
            +QVIACVGQQN+EGKRIPFGFRKRTLPHFI
Sbjct: 213  SQVIACVGQQNLEGKRIPFGFRKRTLPHFI 242


>gi|78190535|gb|ABB29589.1| DNA-directed RNA polymerase II largest subunit [Platynereis
           dumerilii]
          Length = 363

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/328 (67%), Positives = 247/328 (75%), Gaps = 46/328 (14%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++ +MM++L+ L  WDG++PQP +LKP+PLWTGKQ+FSLIIPG VN  RTHSTHPD ED 
Sbjct: 82  DKSEMMSLLLHLEKWDGRLPQPAVLKPRPLWTGKQLFSLIIPGRVNCIRTHSTHPDSEDK 141

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WIS GDTKV+VE G L+ GI+CKKS+G SSGSLLHICF+E+G      FY +IQ V
Sbjct: 142 GPYKWISVGDTKVIVEDGELVCGIICKKSIGASSGSLLHICFMEVGPFETAIFYSDIQRV 201

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNNWLL+EG                                               SIGI
Sbjct: 202 VNNWLLIEGG----------------------------------------------SIGI 215

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIAD  TYLEIQ AIKKAK DV EVI+KAHN +LEP PGNTLRQTFENQVN ILNDAR
Sbjct: 216 GDTIADRSTYLEIQNAIKKAKADVYEVIEKAHNDELEPMPGNTLRQTFENQVNMILNDAR 275

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSA+KSL+E+NN K+MVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPH
Sbjct: 276 DKTGGSAQKSLSEFNNFKSMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPH 335

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFF 398
           FIKDDYGPESRGFVENSYLAGLTP+EFF
Sbjct: 336 FIKDDYGPESRGFVENSYLAGLTPTEFF 363



 Score =  121 bits (303), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/67 (80%), Positives = 59/67 (88%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 297  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAG 356

Query: 1058 LTPSEFF 1064
            LTP+EFF
Sbjct: 357  LTPTEFF 363



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 36/43 (83%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +  +   PR IITPQ+NRPVMGIVQDTL AVRKMTKRDVFLDK
Sbjct: 41   ISQLAQVPRMIITPQSNRPVMGIVQDTLCAVRKMTKRDVFLDK 83


>gi|33326217|gb|AAQ08518.1| RNA polymerase II largest subunit [Amborella trichopoda]
          Length = 1013

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/419 (54%), Positives = 279/419 (66%), Gaps = 52/419 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ R  + H + E      
Sbjct: 481 FMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRYSAWHSESESG---- 536

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT V +E G LL G LCKK+LGTSSGSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 537 FITPGDTCVRIERGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 596

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL +  SIGIGDTIAD  T  +I   I KAK +V E+I+ A    LE  PG         
Sbjct: 597 LLQQAFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQEKQLEAEPGR-------- 648

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 649 --------------------------------------TMMESFENRVNQVLNKARDDAG 670

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KD
Sbjct: 671 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNDRTLPHFTKD 730

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 731 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 790

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNERPT 491
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +FE+  KY  D  N  P+
Sbjct: 791 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRAEFENVYKYEIDQENWSPS 849



 Score =  154 bits (388), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 699  SQMTACVGQQNVEGKRIPFGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 758

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 759  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 800



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 90/171 (52%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +FE
Sbjct: 775 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRAEFE 834

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + Y+++         I  E+     M        L + + D  + ++ + +F+ +V    
Sbjct: 835 NVYKYE---------IDQENWSPSYM--------LPEHVEDLKTIREFQNVFDAEV---- 873

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                         +KL  DR  L  EI ++G+++  +P NL  +I+  Q+
Sbjct: 874 --------------QKLEADRHQLGTEITTTGDNSWPMPVNLKRLIWNAQK 910



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 51/73 (69%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F  L+RST  +K V + YRL+ EAF+W++GEIE+RF Q+   
Sbjct: 941  VPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVA 1000

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 1001 PGEMIGCVAAQSI 1013



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 436  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 489



 Score = 42.0 bits (97), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 41/53 (77%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+  +LG++PK+ARPDWM++ V+P+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 149 EDCQLLGLNPKYARPDWMILQVMPIPPPPVRPSVMMDTSSRSEDDLTHQLAMV 201


>gi|83320426|gb|ABC02840.1| RNA polymerase II largest subunit, partial [Hyaloraphidium
           curvatum]
          Length = 1002

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/413 (54%), Positives = 274/413 (66%), Gaps = 50/413 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++ +MNI M++P WDG+ P P ILKP+PLWTGKQ+ S++IP  +N+T  HSTHPDDE   
Sbjct: 466 RDMVMNICMWIPDWDGQPPPPAILKPQPLWTGKQLMSMVIPSRINVTGKHSTHPDDERDN 525

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
               ISPGDT+VV+E G +L GIL K+++G S+G ++H+   E G E+  +F+   Q VV
Sbjct: 526 ----ISPGDTQVVIEDGVVLAGILSKRTVGNSAGGIIHVIMNEYGPEMAKKFFNGTQRVV 581

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL  G SIGIGDT+AD  T  +I   +K+AKEDV E I +A    LEP PG      
Sbjct: 582 NYWLLQNGFSIGIGDTVADKATMHQINQILKRAKEDVGETIARAQQNQLEPQPGM----- 636

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                    T+R+TFE+ VN+ILN AR+
Sbjct: 637 -----------------------------------------TIRETFESVVNKILNKARE 655

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G +A KSL  +NN K MV AGSKGS INISQ+ ACVGQQNVEGKRIPFGFR RTLPHF
Sbjct: 656 DAGKAATKSLAPFNNAKQMVDAGSKGSEINISQMAACVGQQNVEGKRIPFGFRLRTLPHF 715

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDD  PESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E 
Sbjct: 716 TKDDQSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALED 775

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           VMV YD TVRNS+G +IQ  YGEDG+    VE Q ++ + +S   F+ +Y F+
Sbjct: 776 VMVKYDGTVRNSLGHVIQFAYGEDGMDAVGVERQDLEILRMSDISFKRRYEFN 828



 Score =  150 bits (380), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 80/102 (78%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGFR RTLPHF KDD  PESRGFVENSYL GLTP EFFFHAM
Sbjct: 687  SQMAACVGQQNVEGKRIPFGFRLRTLPHFTKDDQSPESRGFVENSYLRGLTPQEFFFHAM 746

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 747  GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSL 788



 Score = 94.7 bits (234), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 86/167 (51%), Gaps = 37/167 (22%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD TVRNS+G +IQ  YGEDG+    VE Q ++ + +S   F+
Sbjct: 763 GYIQRRLVKALEDVMVKYDGTVRNSLGHVIQFAYGEDGMDAVGVERQDLEILRMSDISFK 822

Query: 652 DKYRFD-PSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRE 710
            +Y F+    +RQL                                  L+RI   D  R 
Sbjct: 823 RRYEFNLQGRDRQL----------------------------------LQRILRPDA-RA 847

Query: 711 LMGSGDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVI 756
           L+   +    ++ E+E+L  DR+ LR +IF SGES+  LP NL  +I
Sbjct: 848 LLDWAETQEAVDGEFEQLENDRKVLRKDIFPSGESSWPLPGNLRRLI 894



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 45/59 (76%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G D LS+QA  NATLL+Q LVRSTL +K V   YRL+SEAFE++VGEI+ +F  A+V
Sbjct: 930  VPGTDGLSRQAQANATLLWQILVRSTLASKRVLSEYRLTSEAFEFVVGEIKTKFMWAKV 988



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 30/35 (85%)

Query: 35  LGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSA 69
           +G+ P+FARP+WMLVTVLPVPP  VRP+V M G++
Sbjct: 142 MGLSPEFARPEWMLVTVLPVPPPQVRPSVSMDGAS 176



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 29/137 (21%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            ++ I + PRQII+PQ N+PVMGIVQDT   +RK T RD  + +                 
Sbjct: 424  IKEIMMVPRQIISPQANKPVMGIVQDTFCGIRKFTLRDNMMTR----------------- 466

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKIN-----AGFG 1603
                   +N+   +PD+D     P +L+ +      T K+L    I  +IN     +   
Sbjct: 467  ----DMVMNICMWIPDWDGQPPPPAILKPQ---PLWTGKQLMSMVIPSRINVTGKHSTHP 519

Query: 1604 DDLNTPLSPTDKKLTME 1620
            DD    +SP D ++ +E
Sbjct: 520  DDERDNISPGDTQVVIE 536


>gi|83320446|gb|ABC02850.1| RNA polymerase II largest subunit, partial [Mortierella
           verticillata]
          Length = 1016

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/423 (54%), Positives = 283/423 (66%), Gaps = 50/423 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +E +MN++M++P W+G +P P ILKPKPLWTG+Q+ S+IIP  +N    HSTHPD+E+S 
Sbjct: 470 KEMVMNLVMWVPGWEGFLPTPAILKPKPLWTGRQMLSMIIPKGINCICYHSTHPDNEESD 529

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
               ISPGDTKV+VE+G L+ GI+CKK++GTS G L+H+   + G EV   F+   QTVV
Sbjct: 530 ----ISPGDTKVIVENGELICGIVCKKTVGTSGGGLIHVIMNQHGPEVAKTFFNGCQTVV 585

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL  G                                               SIGIG
Sbjct: 586 NYWLLQHGF----------------------------------------------SIGIG 599

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DT+AD  T + I   I  A  +V ++I +A    LE  PG TLR+TFE+ VNR LN ARD
Sbjct: 600 DTVADRSTVMTITSIISNATNNVNDLIIQAQQDKLECKPGMTLRETFESLVNRALNTARD 659

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G  A++SL E NN+K MV++GSKGS IN+SQ+ ACVGQQNVEGKRIPFGF+ RTLPHF
Sbjct: 660 DAGKMAQQSLREDNNVKQMVISGSKGSFINVSQMTACVGQQNVEGKRIPFGFKYRTLPHF 719

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDD+ PESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E 
Sbjct: 720 TKDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALED 779

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV YD TVRNS+G +IQ  YGEDG+    VE Q +DTV +S+  FE KYR D +++  +
Sbjct: 780 VMVKYDGTVRNSLGHVIQFCYGEDGMDACHVEKQPLDTVKMSNAAFEKKYRIDLTDKSKS 839

Query: 492 LRN 494
            +N
Sbjct: 840 FKN 842



 Score =  153 bits (387), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 104/164 (63%), Gaps = 7/164 (4%)

Query: 954  AGEDQLSKQANENATLLFQCLVRSTLCT------KLVAENYRLSSEAFEWLVGEIENRF- 1006
            A +D+L  +        F+ LV   L T      K+  ++ R  +   + ++   +  F 
Sbjct: 629  AQQDKLECKPGMTLRETFESLVNRALNTARDDAGKMAQQSLREDNNVKQMVISGSKGSFI 688

Query: 1007 QQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFH 1066
              +Q+ ACVGQQNVEGKRIPFGF+ RTLPHF KDD+ PESRGFVENSYL GLTP EFFFH
Sbjct: 689  NVSQMTACVGQQNVEGKRIPFGFKYRTLPHFTKDDHSPESRGFVENSYLRGLTPQEFFFH 748

Query: 1067 AMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            AMGGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 749  AMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSL 792



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 93/167 (55%), Gaps = 25/167 (14%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD TVRNS+G +IQ  YGEDG+    VE Q +DTV +S+  FE
Sbjct: 767 GYIQRRLVKALEDVMVKYDGTVRNSLGHVIQFCYGEDGMDACHVEKQPLDTVKMSNAAFE 826

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KYR D +++ +                       +   +D+  +KQ+     E   R  
Sbjct: 827 KKYRIDLTDKSK---------------------SFKNGTLDYNVFKQIAEADEEAAKR-- 863

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVIF 757
            G  D+ + LE+E+++L EDR  LR  IF+ G+++  +P N+   I+
Sbjct: 864 -GEPDMQTLLEQEFKQLDEDRHLLRNYIFTEGDNSWPMPTNIRRYIW 909



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G D++S +A +NATLLF+ L+RSTL  + V E Y L+ EAF+W+VGEI +RF  A   
Sbjct: 944  VRGTDRISVEAQDNATLLFRMLIRSTLAVRRVIEEYHLTREAFDWVVGEIGSRFAHAIVN 1003

Query: 1010 --QVIACVGQQNV 1020
              +++  V  Q++
Sbjct: 1004 PGEMVGTVAAQSI 1016



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 37/54 (68%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            +  I + PRQI++PQ+N+PVMGIVQDTL  VRK TKRD FL K      + + P
Sbjct: 428  ITEICMVPRQIVSPQSNKPVMGIVQDTLCGVRKFTKRDCFLTKEMVMNLVMWVP 481



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 46/63 (73%), Gaps = 1/63 (1%)

Query: 21  AWYVVPYPYEESI-ILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           A++++    +E I  +G+ P+FARP+WM++TVLP+PPL+VRP++ M GS+  ++ + + L
Sbjct: 136 AYHILKRISDEDIEAMGLSPEFARPEWMIMTVLPIPPLAVRPSIQMDGSSTGEDDLTHKL 195

Query: 80  MFL 82
             +
Sbjct: 196 FAI 198


>gi|357144975|ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
           [Brachypodium distachyon]
          Length = 1862

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/422 (54%), Positives = 285/422 (67%), Gaps = 52/422 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++  MNILM+   +DGK+P P ILKP+P+WTGKQVF+LIIP  +N+ R  + H + E   
Sbjct: 557 KDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKLINLIRFSAWHAESESG- 615

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
              +I+PGDT V +E G LL G LCKK+LGT +GSL+H+ + E+G +   +F G+ Q +V
Sbjct: 616 ---FITPGDTMVRIEKGELLSGTLCKKTLGTGTGSLIHVIWEEVGPDAARKFLGHTQWLV 672

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL  G                                               SIGIG
Sbjct: 673 NYWLLQNGF----------------------------------------------SIGIG 686

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD  T  +I   I KAK +V E+I++A +  LEP PG T+ ++FEN+VN++LN ARD
Sbjct: 687 DTIADASTMEKINETISKAKSEVTELIKQAQDKLLEPEPGRTMMESFENRVNQVLNKARD 746

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF
Sbjct: 747 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHF 806

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            K+DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME 
Sbjct: 807 TKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 866

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRF--DPSNER 489
           +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F++ YR+  D  N R
Sbjct: 867 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKAEFDNVYRYELDDENWR 926

Query: 490 PT 491
           PT
Sbjct: 927 PT 928



 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/514 (44%), Positives = 315/514 (61%), Gaps = 61/514 (11%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F  L+RST  +K V + YRL+ E+FEW++GEIE+RF Q+   
Sbjct: 1020 VPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVA 1079

Query: 1010 --QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
              ++I CV  Q++ G+                    P ++  +   + AG++        
Sbjct: 1080 PGEMIGCVAAQSI-GE--------------------PATQMTLNTFHYAGVSAKNVTLGV 1118

Query: 1068 MGGREGLIDTAVKTAETVNVLVFL-----------------------FQVTANTAIYYDP 1104
               RE  I    K  +T ++ VFL                         VT  T I+YDP
Sbjct: 1119 PRLRE--IINVAKKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDP 1176

Query: 1105 DPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINA 1162
            DP  T+I ED +FV  YYEMPD   DP +ISPWLLRIEL+R+ M DKKL+M  I+EKIN 
Sbjct: 1177 DPLGTIIEEDMDFVKSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINH 1236

Query: 1163 GFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMT 1222
             F DDL+CIFNDDNA+KL+LR+RI N +  K + ++++    EDD+FL+ IE NML++M 
Sbjct: 1237 EFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESA---EDDVFLKKIEGNMLTEMA 1293

Query: 1223 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1282
            L+GI  I KV++   + +        E+  FK   +W+L+T+G +L+ V+   DVD  RT
Sbjct: 1294 LRGIPDINKVFIKYGKINK-----FDENDGFKPDNEWMLDTEGVNLLAVMCHEDVDATRT 1348

Query: 1283 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1342
             SN + E+ +VLGIEAVR+S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRH
Sbjct: 1349 TSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRH 1408

Query: 1343 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDA 1402
            GINR DTG LMRCSFEETVD+L+DAA +AE+D +RGV+ENI++GQL  +GTG   L L+ 
Sbjct: 1409 GINRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLND 1468

Query: 1403 EKCKDGIEIPLATGMMGGPAGMFFGSAATPSSIP 1436
            +  +  IE+ L + + G        + A+PS  P
Sbjct: 1469 QMLQQAIELQLPSYVEGLEYIGMTPARASPSGTP 1502



 Score =  165 bits (417), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 118/174 (67%), Gaps = 8/174 (4%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DT
Sbjct: 1356 VIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1415

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G LMRCSFEETVD+L+DAA +AE+D +RGV+ENI++GQL  +GTG   L L+ +  +  I
Sbjct: 1416 GPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAI 1475

Query: 893  EIPLATGMMGGPAGMFFGSAATPSS--------MSPQMTPWAQSTPAYNALMSP 938
            E+ L + + G        + A+PS         MSP ++P  +S+P  +A  SP
Sbjct: 1476 ELQLPSYVEGLEYIGMTPARASPSGTPYHDGGMMSPMLSPNFRSSPISDAQFSP 1529



 Score =  150 bits (379), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF K+DYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 778  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAM 837

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 838  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 879



 Score =  131 bits (329), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/154 (47%), Positives = 93/154 (60%), Gaps = 33/154 (21%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTD 1586
            L  VT  T I+YDPDP  T+I ED +FV  YYEMPD   DP +ISPWLLRIEL+R+ M D
Sbjct: 1163 LRSVTHATEIWYDPDPLGTIIEEDMDFVKSYYEMPDEDIDPDKISPWLLRIELNREMMVD 1222

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+EKIN  F DDL+CIFNDDNA+KL
Sbjct: 1223 KKLS----------------------------MADIAEKINHEFDDDLSCIFNDDNADKL 1254

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            +LR+RI N +  K + ++++    EDD+FL+ IE
Sbjct: 1255 ILRVRITNDEAPKGEIQDESA---EDDVFLKKIE 1285



 Score =  121 bits (304), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 69/90 (76%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETV
Sbjct: 1368 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1427

Query: 576  DVLMDAAAHAEADPMRGYIQRRLIKAMESV 605
            D+L+DAA +AE+D +RG  +  ++  +  +
Sbjct: 1428 DILLDAAVYAESDYLRGVTENIMLGQLAPI 1457



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 89/171 (52%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 854 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKAEFD 913

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + YR++  +E   R  +                 L + + D  + ++ R +F        
Sbjct: 914 NVYRYELDDE-NWRPTY----------------MLPEHVDDLKTIREFRNVF-------- 948

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                     E E +KL  DR  L  EI ++G+++  +P NL  +I+  Q+
Sbjct: 949 ----------EAEVQKLEADRLQLGTEITTTGDNSWPMPVNLKRLIWNAQK 989



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            V  + + P+ I++PQ NRPVMGIVQDTL   RK+TKRD  ++K
Sbjct: 515  VLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIEK 557



 Score = 45.4 bits (106), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 42/53 (79%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+ ++LG++PKFARPDWM++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 228 EDCLLLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 280


>gi|157841392|gb|ABV83150.1| RNA polymerase 2 [Brevibucca saprophaga]
          Length = 386

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/409 (58%), Positives = 284/409 (69%), Gaps = 53/409 (12%)

Query: 974  LVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA-----QVIACVGQQN--------- 1019
            L+RSTLC+K VAE ++L++EAFEWL+GEIE +F QA     +++  +  Q+         
Sbjct: 3    LLRSTLCSKKVAEKHKLNTEAFEWLLGEIETKFNQAIAQPGEMVGALAAQSLGEPATQMT 62

Query: 1020 --------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 1071
                    V  K +  G  +  L   I     P+             TPS   F   G  
Sbjct: 63   LNTFHYAGVSAKNVTLGVPR--LKEIINVSKNPK-------------TPSLTVFLTGG-- 105

Query: 1072 EGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMP 1125
                  AVK AE   +VL       L +VT+NTAIYYD D +NT I  D+++V+++YEMP
Sbjct: 106  ------AVKDAEKAKDVLCKLEHTTLRKVTSNTAIYYDADIRNTCIEADEDWVSIFYEMP 159

Query: 1126 DFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIR 1185
            DFDP+R SPWLLR+EL+RKRMTDKKLTME I++KIN GFGDDLN I+ DDNA+ LV RIR
Sbjct: 160  DFDPSRCSPWLLRLELNRKRMTDKKLTMEHIADKINKGFGDDLNVIYTDDNADTLVFRIR 219

Query: 1186 IMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRI 1245
            I  SD  K   EE+ VDKMEDD+FLRCIEANMLSD+TLQGIE I KVYMH P TD KKR 
Sbjct: 220  INASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPNTDDKKRT 277

Query: 1246 IITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEK 1305
             IT  G FK++A+W+LETDGT+L+KVLSER VDPVRT SNDICEIF VLGIEAVRKS+E+
Sbjct: 278  FITTEGAFKSVAEWILETDGTALLKVLSERHVDPVRTTSNDICEIFDVLGIEAVRKSIER 337

Query: 1306 EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1354
            EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ  GALMR
Sbjct: 338  EMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQXVGALMR 386



 Score =  166 bits (420), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/172 (52%), Positives = 111/172 (64%), Gaps = 31/172 (18%)

Query: 1510 GIVQDTLTAVRKMTKRD-VFLDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPT 1568
            G V+D   A   + K +   L KVT+NTAIYYD D +NT I  D+++V+++YEMPDFDP+
Sbjct: 105  GAVKDAEKAKDVLCKLEHTTLRKVTSNTAIYYDADIRNTCIEADEDWVSIFYEMPDFDPS 164

Query: 1569 RISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINA 1628
            R SPWLLR+EL+RKRMTDKKLTME I++KIN GFGDDLN                     
Sbjct: 165  RCSPWLLRLELNRKRMTDKKLTMEHIADKINKGFGDDLNV-------------------- 204

Query: 1629 GFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
                    I+ DDNA+ LV RIRI  SD  K   EE+ VDKMEDD+FLRCIE
Sbjct: 205  --------IYTDDNADTLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIE 246



 Score =  105 bits (261), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 57/68 (83%), Gaps = 3/68 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRKS+E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 319 ICEIFDVLGIEAVRKSIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 378

Query: 830 QDTGALMR 837
           Q  GALMR
Sbjct: 379 QXVGALMR 386



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/53 (81%), Positives = 47/53 (88%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 568
           S+E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ  GALMR
Sbjct: 334 SIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQXVGALMR 386


>gi|356605958|gb|AET25010.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 9
            KK-2011]
          Length = 607

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/415 (56%), Positives = 289/415 (69%), Gaps = 42/415 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+G D++SKQA  NATLL   L+RSTLCTK +  + +L++EAF+WL+GEIE RFQQA   
Sbjct: 212  VSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQ 271

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  +  Q+                 V  K +  G  R + + +  K    P    F
Sbjct: 272  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVF 331

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            +  +             A    E   D   K   T      L +VT NTAIYYDPDP+NT
Sbjct: 332  LTGA-------------AAKDPEKAKDVLCKLEHTT-----LKKVTCNTAIYYDPDPKNT 373

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            VI ED+E+V+++YEMPD D TR SPWLLRIELDRKRM DKKLTME I+++I+ GFG D++
Sbjct: 374  VIAEDEEWVSIFYEMPDHDLTRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGQDVH 433

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV R+RI   +D   + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI
Sbjct: 434  TIYTDDNAEKLVFRLRIA-GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAI 492

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYM+ P TD KKRIIIT  G FKA+ADW+LETDGT+L++VLSER +DPVRT SNDICE
Sbjct: 493  SKVYMNQPNTDDKKRIIITPEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICE 552

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            IF+VLGIEAVRKS+EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 553  IFEVLGIEAVRKSIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 607



 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 104/124 (83%)

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV
Sbjct: 1   KDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 60

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE  +R D ++ +   
Sbjct: 61  MVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLR 120

Query: 493 RNVS 496
           +N S
Sbjct: 121 KNYS 124



 Score =  167 bits (424), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/152 (55%), Positives = 104/152 (68%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D TR SPWLLRIELDRKRM DKK
Sbjct: 355  LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLTRTSPWLLRIELDRKRMVDKK 414

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+ GFG D++T                            I+ DDNAEKLV 
Sbjct: 415  LTMEMIADRIHGGFGQDVHT----------------------------IYTDDNAEKLVF 446

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   +D   + +E+ VDKMEDD+FLRCIE
Sbjct: 447  RLRIA-GEDKGAEGQEEQVDKMEDDVFLRCIE 477



 Score =  131 bits (329), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 100/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 47  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 106

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++ + LR+ ++EDV+RE+  S D IS +E                        
Sbjct: 107 RDFRMDLTDNKFLRKNYSEDVVREIQESQDGISLVE------------------------ 142

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 143 -----------SEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQK 181



 Score =  104 bits (260), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 57/72 (79%)

Query: 1039 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANT 1098
            KDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET  +   L +   + 
Sbjct: 1    KDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 60

Query: 1099 AIYYDPDPQNTV 1110
             + YD   +N++
Sbjct: 61   MVNYDGTVRNSL 72



 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 43/58 (74%), Positives = 49/58 (84%), Gaps = 3/58 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 827
           +C+I  VL   +VRKS+EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 550 ICEIFEVLGIEAVRKSIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 607



 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/43 (83%), Positives = 39/43 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 558
           S+EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 565 SIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 607


>gi|66815437|ref|XP_641735.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
 gi|166202448|sp|P35084.2|RPB1_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb1;
           Short=RNA polymerase II subunit B1; AltName:
           Full=DNA-directed RNA polymerase III subunit A
 gi|60469758|gb|EAL67745.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
          Length = 1727

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/411 (56%), Positives = 278/411 (67%), Gaps = 51/411 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++ +MNILM+LP WDGK+P P ILKPK LWTGKQ+FSLIIP ++N+ R  STH D E + 
Sbjct: 548 KDLVMNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLIIP-DINLIRFTSTHNDKEPNE 606

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
                S GDT+V++E G LL GILCK+SLG ++GS++H+   E GH+ C  F    QTVV
Sbjct: 607 ----CSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVV 662

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N+WL+  G ++GIGDTIAD  T  ++ + I  AK  V E+I KA N   E  PG S    
Sbjct: 663 NHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNKQFECQPGKS---- 718

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                 VIE                    TFE +VN++LN ARD
Sbjct: 719 ----------------------VIE--------------------TFEQKVNQVLNKARD 736

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G SA+ SL+E NNLKAMV AGSKGS INISQ++ACVGQQNVEGKRIPFGF+ RTLPHF
Sbjct: 737 TAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQMMACVGQQNVEGKRIPFGFQSRTLPHF 796

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME 
Sbjct: 797 TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 856

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYR 482
           V + YD TVRNS+G +IQ  YGEDG+ G  VE+Q ID++   + + E  YR
Sbjct: 857 VSIKYDATVRNSLGDVIQFAYGEDGIDGCFVENQSIDSLRKDNTELERMYR 907



 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 233/496 (46%), Positives = 312/496 (62%), Gaps = 37/496 (7%)

Query: 966  NATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA-----QVIACVGQQNV 1020
            NAT+LF  LVRST  +K V   +RL+ +AF W+ GEIE++F QA     +++  +  Q++
Sbjct: 1032 NATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIESKFLQALAHPGEMVGALAAQSI 1091

Query: 1021 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL-----TPS-EFFFHAMGGREGL 1074
             G+  P         H+        + G      +  +     TPS   +      R+  
Sbjct: 1092 -GE--PATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQVKTPSLTIYLKPHMARD-- 1146

Query: 1075 IDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRI 1132
            +D A K  ++      L  VT+ T IYYDPDPQNT+I ED EFVN Y+E+PD   D   +
Sbjct: 1147 MDRA-KIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAEFVNSYFELPDEEIDVHSM 1205

Query: 1133 SPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDS 1192
            SPWLLRIELDR  +TDKKLTM  I++ +   FG  LNCIF+DDNAEKL+LRIR++ S ++
Sbjct: 1206 SPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSDDNAEKLILRIRMVESQET 1265

Query: 1193 KMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGE 1252
            K  D +D      DD FLR IE+NMLS+M L+GI+ I KV+M   +TD K   + TE+G 
Sbjct: 1266 KGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFM---RTDDKIPKV-TENGG 1315

Query: 1253 FKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQ 1312
            F    +W+L+TDG SL++V+S  DVD  RT SNDI EI QVLGIEAVR ++ KE+  V+ 
Sbjct: 1316 FGVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNALLKELRAVIS 1375

Query: 1313 FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE 1372
            F G YVNYRHLA+L DVMT +GHLMAITRHGINR +TG LMRCSFEETV++LMDAA  +E
Sbjct: 1376 FDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEILMDAAMFSE 1435

Query: 1373 ADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGMFF---GSA 1429
             D ++GV+ENII+GQLP +GTG F++ L+ +  K+   I L       P+ + +     +
Sbjct: 1436 TDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPE-----PSNVSYPDTPGS 1490

Query: 1430 ATPSSIPGPPAWYPIH 1445
             TPS   G  +  P H
Sbjct: 1491 QTPSYSYGDGSTTPFH 1506



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 119/183 (65%), Gaps = 9/183 (4%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR ++ KE+  V+ F G YVNYRHLA+L DVMT +GHLMAITRHGINR +T
Sbjct: 1353 IIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVET 1412

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G LMRCSFEETV++LMDAA  +E D ++GV+ENII+GQLP +GTG F++ L+ +  K+  
Sbjct: 1413 GPLMRCSFEETVEILMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAH 1472

Query: 893  EIPLATGMMGGPAGMFFGSAATPSSMSPQMTPW-AQSTPAYNALMSPGAAMTPGGPG-FS 950
             I L       P+ + +    TP S +P  +     +TP +N   +P +       G FS
Sbjct: 1473 SIALPE-----PSNVSYPD--TPGSQTPSYSYGDGSTTPFHNPYDAPLSPFNETFRGDFS 1525

Query: 951  PSV 953
            PS 
Sbjct: 1526 PSA 1528



 Score =  157 bits (397), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 72/102 (70%), Positives = 84/102 (82%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q++ACVGQQNVEGKRIPFGF+ RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 768  SQMMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 827

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   + +I YD   +N++
Sbjct: 828  GGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSL 869



 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/154 (49%), Positives = 92/154 (59%), Gaps = 36/154 (23%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTD 1586
            L  VT+ T IYYDPDPQNT+I ED EFVN Y+E+PD   D   +SPWLLRIELDR  +TD
Sbjct: 1162 LANVTSATEIYYDPDPQNTIISEDAEFVNSYFELPDEEIDVHSMSPWLLRIELDRGMVTD 1221

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKLTM  I++ +   FG      LS                      LNCIF+DDNAEKL
Sbjct: 1222 KKLTMADITQCVVRDFG------LS----------------------LNCIFSDDNAEKL 1253

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            +LRIR++ S ++K  D +D      DD FLR IE
Sbjct: 1254 ILRIRMVESQETKGTDNDD------DDQFLRRIE 1281



 Score =  113 bits (282), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 62/77 (80%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            KE+  V+ F G YVNYRHLA+L DVMT +GHLMAITRHGINR +TG LMRCSFEETV++L
Sbjct: 1368 KELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEIL 1427

Query: 579  MDAAAHAEADPMRGYIQ 595
            MDAA  +E D ++G  +
Sbjct: 1428 MDAAMFSETDDVKGVTE 1444



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 99/198 (50%), Gaps = 36/198 (18%)

Query: 592  GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
            GYIQRRL+KAME V + YD TVRNS+G +IQ  YGEDG+ G  VE+Q ID++        
Sbjct: 844  GYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFVENQSIDSLR------- 896

Query: 652  DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
                    +  +L R++   V +   G G     ++  +++H        + N+ + R+ 
Sbjct: 897  -------KDNTELERMYRHQVDKPDYGDG----WMDPLVIEH--------VRNDSLTRDT 937

Query: 712  MGSGDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVIFILQRWKLWGNENL 770
                     LEKE+E++  DR  LR EI  SGE+N  LP NL  +I   Q+        +
Sbjct: 938  ---------LEKEFERIKSDRSLLRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRV 988

Query: 771  RFLCKIIFVLSVRKSVEK 788
              L   + VL + K V +
Sbjct: 989  SDLNPAVVVLEIEKLVAR 1006



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 1492 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            I + PRQI++PQ+NRPVMGIVQDTL   R  TKRD F++K
Sbjct: 509  IMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEK 548


>gi|449524332|ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
           [Cucumis sativus]
          Length = 1853

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/418 (55%), Positives = 280/418 (66%), Gaps = 52/418 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MN LM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+TRT + H + E      
Sbjct: 559 FMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGH--- 615

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            I+PGDT V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 616 -ITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 674

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL                                    Q A           SIGIGDTI
Sbjct: 675 LL------------------------------------QNAF----------SIGIGDTI 688

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD  T  +I   I  AK +V  +I+KA    LEP PG T+  +FEN+VN++LN ARD  G
Sbjct: 689 ADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAG 748

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KD
Sbjct: 749 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKD 808

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 809 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 868

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNERP 490
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  K+FE   +Y F+  N +P
Sbjct: 869 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKP 926



 Score =  415 bits (1066), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 237/512 (46%), Positives = 316/512 (61%), Gaps = 55/512 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V GED LS +A +NATL F  L+RST  +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 1019 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVA 1078

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              ++I CV  Q+                 V  K +  G  R R + +  K    P     
Sbjct: 1079 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP----- 1133

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
               S    L P      A   +E       KT +       L  VT  T ++YDPDP +T
Sbjct: 1134 ---SLSVYLKP-----EANKTKE-----RAKTVQCALEYTTLRSVTQATEVWYDPDPMST 1180

Query: 1110 VIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
            +I ED +FV  YYEMPD +  P +ISPWLLRIEL+R+ M DKKL+M  I+EKIN  F DD
Sbjct: 1181 IIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDD 1240

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIE 1227
            L CIFNDDNAEKL+LRIRIMN +  K +  +++    EDD+FL+ IE+NML++M L+GI 
Sbjct: 1241 LTCIFNDDNAEKLILRIRIMNDEAPKGELTDESA---EDDVFLKKIESNMLTEMALRGIP 1297

Query: 1228 AIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDI 1287
             I KV++   + +        E+  FK   +W+L+T+G +L+ V++  DVD  RT SN +
Sbjct: 1298 DINKVFIKCGKVNK-----FDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHL 1352

Query: 1288 CEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 1347
             E+ +VLGIEAVR+S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR 
Sbjct: 1353 IEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRN 1412

Query: 1348 DTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1407
            DTG +MRCSFEETVD+L+DAA +AE D +RGV+ENI++GQL  +GTG   L L+ E  K+
Sbjct: 1413 DTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKN 1472

Query: 1408 GIEIPLATGMMGGPAGMFFGSAATPSSIPGPP 1439
             IE+ L + +     G+ FG   + S I G P
Sbjct: 1473 AIELQLPSYI----DGLDFGMTPSRSPISGTP 1500



 Score =  172 bits (436), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/184 (48%), Positives = 122/184 (66%), Gaps = 7/184 (3%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DT
Sbjct: 1355 VIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1414

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G +MRCSFEETVD+L+DAA +AE D +RGV+ENI++GQL  +GTG   L L+ E  K+ I
Sbjct: 1415 GPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAI 1474

Query: 893  EIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTP-GGPGFSP 951
            E+ L + + G   GM      TPS      TP+ +   + N L+SP   ++P     FSP
Sbjct: 1475 ELQLPSYIDGLDFGM------TPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQFSP 1528

Query: 952  SVAG 955
             V G
Sbjct: 1529 YVGG 1532



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 777  SQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 836

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 837  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 878



 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 93/154 (60%), Gaps = 33/154 (21%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTD 1586
            L  VT  T ++YDPDP +T+I ED +FV  YYEMPD +  P +ISPWLLRIEL+R+ M D
Sbjct: 1162 LRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVD 1221

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+EKIN  F DDL CIFNDDNAEKL
Sbjct: 1222 KKLS----------------------------MANIAEKINLEFDDDLTCIFNDDNAEKL 1253

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            +LRIRIMN +  K +  +++    EDD+FL+ IE
Sbjct: 1254 ILRIRIMNDEAPKGELTDESA---EDDVFLKKIE 1284



 Score =  120 bits (301), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1367 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1426

Query: 576  DVLMDAAAHAEADPMRGYIQRRLIKAMESV 605
            D+L+DAA +AE D +RG  +  ++  +  +
Sbjct: 1427 DILLDAAVYAETDHLRGVTENIMLGQLAPI 1456



 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  K+FE
Sbjct: 853 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFE 912

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R++  +E                        L + + D  + ++ R +F        
Sbjct: 913 RIFRYEFEDENWKPNYM-----------------LPEHVEDLKTIREFRNVF-------- 947

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                     E E +KL  DR  L  EI ++GE++  +P NL  +I   Q+
Sbjct: 948 ----------EAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQK 988



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F+ K V  NT ++++
Sbjct: 514  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLMWWE 567



 Score = 42.7 bits (99), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 41/53 (77%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+  +LG++PK+ARPDWM++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 227 EDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 279


>gi|33326211|gb|AAQ08515.1| RNA polymerase II largest subunit [Zea mays]
          Length = 1009

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/419 (54%), Positives = 279/419 (66%), Gaps = 52/419 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+P+WTGKQVF+LIIP  +N+ R  + H ++E      
Sbjct: 477 FMNILMWWQDFDGKIPAPTILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSEEEKG---- 532

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT V +E G LL G LCKKSLGT SGSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 533 FITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 592

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G SIGIGDTIAD  T   I   I KAK  V E+I+KAH   LE  PG         
Sbjct: 593 LLQNGFSIGIGDTIADASTMETINDTISKAKNAVKELIKKAHEKQLEAEPGR-------- 644

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 645 --------------------------------------TMMESFENRVNQVLNKARDDAG 666

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+ SL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KD
Sbjct: 667 SSAQNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKD 726

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 727 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 786

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRF--DPSNERPT 491
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F++ +R+  D  N RP 
Sbjct: 787 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDNVFRYELDDENWRPN 845



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/150 (54%), Positives = 95/150 (63%), Gaps = 22/150 (14%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 695  SQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 754

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYD----------------PDPQNTVIP 1112
            GGREGLIDTAVKT+ET  +   L +   +  + YD                 D  + V  
Sbjct: 755  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 814

Query: 1113 EDQEFVNVYYEMPDFDPTRISPWLLRIELD 1142
            E Q+  ++  + P+FD       + R ELD
Sbjct: 815  ESQKLDSLKMKKPEFDN------VFRYELD 838



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 771 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFD 830

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + +R++  +E                        L + + D  + ++ R +F        
Sbjct: 831 NVFRYELDDENWRPNYM-----------------LPEHVDDLKTIREFRNVF-------- 865

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                     E E +KL  DR  L  EI ++G+++  +P NL  +I+  Q+
Sbjct: 866 ----------EAEVQKLEADRYQLGSEITTTGDNSWPMPVNLKRLIWNAQK 906



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 51/73 (69%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F  L+RST  +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 937  VPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVA 996

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 997  PGEMIGCVAAQSI 1009



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYY 1540
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD  ++K V  N  +++
Sbjct: 432  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWW 484


>gi|330795314|ref|XP_003285719.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
 gi|325084350|gb|EGC37780.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
          Length = 1755

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/408 (55%), Positives = 275/408 (67%), Gaps = 51/408 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           +MNILM+LP WDGK+P P ILKPK LWTGKQ+FSLIIP ++N+ R  STH D E   P +
Sbjct: 552 VMNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLIIP-DINLIRFTSTHNDKE---PNE 607

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
             S GDT+V++E G LL GILCK+SLG ++GS++H+   E GH+ C  F    QTVVN+W
Sbjct: 608 -CSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVVNHW 666

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           L+  G ++GIGDTIAD QT  ++ + I  AK  V E+I KA N   E  PG S+      
Sbjct: 667 LINRGFTMGIGDTIADAQTMEKVTLTISSAKNQVKELIIKAQNKQFECQPGKSV------ 720

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                    +TFE +VN++LN ARD  G
Sbjct: 721 ----------------------------------------METFEQKVNQVLNKARDTAG 740

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+ SL+E NNLKAMV AGSKGS INISQ++ACVGQQNVEGKR+PFGF+ RTLPHF KD
Sbjct: 741 SSAQNSLSEANNLKAMVTAGSKGSFINISQMMACVGQQNVEGKRVPFGFQSRTLPHFTKD 800

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME V +
Sbjct: 801 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVSI 860

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYR 482
            YD TVRNS+G +IQ  YGEDG+ G  VE Q ID++   +   E  Y+
Sbjct: 861 KYDATVRNSLGDVIQFAYGEDGIDGCFVESQSIDSLRKDNHDLERMYK 908



 Score =  384 bits (987), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/462 (48%), Positives = 300/462 (64%), Gaps = 31/462 (6%)

Query: 966  NATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA-----QVIACVGQQNV 1020
            NATLLF  LVRST+ +K V   +RL+ +AF W+VGEIE++F QA     +++  +  Q++
Sbjct: 1033 NATLLFSILVRSTMASKRVLTEFRLTEKAFLWVVGEIESKFLQALAHPGEMVGALAAQSI 1092

Query: 1021 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL-----TPS-EFFFHAMGGREGL 1074
             G+  P         H+        + G      +  +     TPS   +      R+  
Sbjct: 1093 -GE--PATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQVKTPSLTIYLKPHIARD-- 1147

Query: 1075 IDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEM---PDFDPTR 1131
            +D A KT ++      L  VT+ T IYYDPDP+NT+I ED EFVN Y+E     D    R
Sbjct: 1148 MDCA-KTVKSHLEYTTLANVTSATEIYYDPDPENTIISEDAEFVNSYFEFGMNEDVGVER 1206

Query: 1132 ISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD 1191
            +SPWLLRIELDR  +T KKLTM  I++ +   FG +LNCIF+DDNA+KL+LRIR++ S+D
Sbjct: 1207 MSPWLLRIELDRGMVTAKKLTMAEITQCVVRDFGLNLNCIFSDDNADKLILRIRMVESED 1266

Query: 1192 SKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESG 1251
             K ++++D       D FLR IE+NMLS M L+GI+ I KV+M   +TD K   I+ + G
Sbjct: 1267 MKTENDDD-------DQFLRRIESNMLSGMVLRGIKGIKKVFM---RTDDKIPKIL-DDG 1315

Query: 1252 EFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVL 1311
             +    +W+L+TDG SL++V+S  DVD  RT SNDI EI QVLGIEAVR ++ KE+  V+
Sbjct: 1316 SYGNREEWILDTDGVSLLEVMSHPDVDHSRTTSNDIVEIIQVLGIEAVRNALLKELRAVI 1375

Query: 1312 QFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHA 1371
             F G YVNYRHLA+L DVMT +GHLMAITRHGINR +TG LMRCSFEETV++LMDAA  +
Sbjct: 1376 SFDGSYVNYRHLAVLADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEILMDAAMFS 1435

Query: 1372 EADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL 1413
            E D ++GV+ENII+GQLP +GTG F++ L+ +  K+   I L
Sbjct: 1436 ETDDVKGVTENIILGQLPPLGTGSFEVYLNQDMVKNAHSIAL 1477



 Score =  163 bits (413), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 116/182 (63%), Gaps = 8/182 (4%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR ++ KE+  V+ F G YVNYRHLA+L DVMT +GHLMAITRHGINR +T
Sbjct: 1354 IIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAVLADVMTYRGHLMAITRHGINRVET 1413

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G LMRCSFEETV++LMDAA  +E D ++GV+ENII+GQLP +GTG F++ L+ +  K+  
Sbjct: 1414 GPLMRCSFEETVEILMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVYLNQDMVKNAH 1473

Query: 893  EIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPG-FSP 951
             I L       P         TP S +P  +    STP +N   +P +       G FSP
Sbjct: 1474 SIAL-------PEPSAISYPDTPGSQTPSYSYDGSSTPFHNPYDAPLSPFNETYRGDFSP 1526

Query: 952  SV 953
            S 
Sbjct: 1527 SA 1528



 Score =  157 bits (396), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 84/102 (82%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q++ACVGQQNVEGKR+PFGF+ RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 769  SQMMACVGQQNVEGKRVPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 828

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   + +I YD   +N++
Sbjct: 829  GGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSL 870



 Score =  119 bits (299), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/178 (42%), Positives = 102/178 (57%), Gaps = 37/178 (20%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEM---PDFDPTRISPWLLRIELDRKRMT 1585
            L  VT+ T IYYDPDP+NT+I ED EFVN Y+E     D    R+SPWLLRIELDR  +T
Sbjct: 1163 LANVTSATEIYYDPDPENTIISEDAEFVNSYFEFGMNEDVGVERMSPWLLRIELDRGMVT 1222

Query: 1586 DKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1645
             KKLTM  I++ +   FG  LN                          LNCIF+DDNA+K
Sbjct: 1223 AKKLTMAEITQCVVRDFG--LN--------------------------LNCIFSDDNADK 1254

Query: 1646 LVLRIRIMNSDDSKMQDEEDA--VDKMEDDMF----LRCIEETDRSFVKVDFVEPKDL 1697
            L+LRIR++ S+D K ++++D   + ++E +M     LR I+   + F++ D   PK L
Sbjct: 1255 LILRIRMVESEDMKTENDDDDQFLRRIESNMLSGMVLRGIKGIKKVFMRTDDKIPKIL 1312



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 62/77 (80%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            KE+  V+ F G YVNYRHLA+L DVMT +GHLMAITRHGINR +TG LMRCSFEETV++L
Sbjct: 1369 KELRAVISFDGSYVNYRHLAVLADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEIL 1428

Query: 579  MDAAAHAEADPMRGYIQ 595
            MDAA  +E D ++G  +
Sbjct: 1429 MDAAMFSETDDVKGVTE 1445



 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 83/171 (48%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME V + YD TVRNS+G +IQ  YGEDG+ G  VE Q ID++        
Sbjct: 845 GYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFVESQSIDSLR------- 897

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
                   +   L R++   V +   G G               W       +  V+  +
Sbjct: 898 -------KDNHDLERMYKHMVEKPDYGEG---------------W------MDPLVIELV 929

Query: 712 MGSGDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVIFILQR 761
            G   +   LEKE+E++  DR  +R EI  +GE++  LP NL  +I   Q+
Sbjct: 930 RGDPLIRDTLEKEFERIKSDRTLMRNEIIPTGENSWPLPVNLRRLITNAQK 980



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 1492 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            I + PRQI++PQ+NRPVMGIVQDTL   R  TKRD F+++
Sbjct: 510  IMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDTFIER 549


>gi|449456849|ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
           subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/418 (55%), Positives = 280/418 (66%), Gaps = 52/418 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MN LM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+TRT + H + E      
Sbjct: 559 FMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGH--- 615

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            I+PGDT V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 616 -ITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 674

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL                                    Q A           SIGIGDTI
Sbjct: 675 LL------------------------------------QNAF----------SIGIGDTI 688

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD  T  +I   I  AK +V  +I+KA    LEP PG T+  +FEN+VN++LN ARD  G
Sbjct: 689 ADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAG 748

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KD
Sbjct: 749 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKD 808

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 809 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 868

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNERP 490
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  K+FE   +Y F+  N +P
Sbjct: 869 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKP 926



 Score =  414 bits (1065), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 237/512 (46%), Positives = 316/512 (61%), Gaps = 55/512 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V GED LS +A +NATL F  L+RST  +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 1019 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVA 1078

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              ++I CV  Q+                 V  K +  G  R R + +  K    P     
Sbjct: 1079 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP----- 1133

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
               S    L P      A   +E       KT +       L  VT  T ++YDPDP +T
Sbjct: 1134 ---SLSVYLKP-----EANKTKE-----RAKTVQCALEYTTLRSVTQATEVWYDPDPMST 1180

Query: 1110 VIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
            +I ED +FV  YYEMPD +  P +ISPWLLRIEL+R+ M DKKL+M  I+EKIN  F DD
Sbjct: 1181 IIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDD 1240

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIE 1227
            L CIFNDDNAEKL+LRIRIMN +  K +  +++    EDD+FL+ IE+NML++M L+GI 
Sbjct: 1241 LTCIFNDDNAEKLILRIRIMNDEAPKGELTDESA---EDDVFLKKIESNMLTEMALRGIP 1297

Query: 1228 AIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDI 1287
             I KV++   + +        E+  FK   +W+L+T+G +L+ V++  DVD  RT SN +
Sbjct: 1298 DINKVFIKCGKVNK-----FDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHL 1352

Query: 1288 CEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 1347
             E+ +VLGIEAVR+S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR 
Sbjct: 1353 IEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRN 1412

Query: 1348 DTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1407
            DTG +MRCSFEETVD+L+DAA +AE D +RGV+ENI++GQL  +GTG   L L+ E  K+
Sbjct: 1413 DTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKN 1472

Query: 1408 GIEIPLATGMMGGPAGMFFGSAATPSSIPGPP 1439
             IE+ L + +     G+ FG   + S I G P
Sbjct: 1473 AIELQLPSYI----DGLDFGMTPSRSPISGTP 1500



 Score =  172 bits (436), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/184 (48%), Positives = 122/184 (66%), Gaps = 7/184 (3%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DT
Sbjct: 1355 VIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1414

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G +MRCSFEETVD+L+DAA +AE D +RGV+ENI++GQL  +GTG   L L+ E  K+ I
Sbjct: 1415 GPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAI 1474

Query: 893  EIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTP-GGPGFSP 951
            E+ L + + G   GM      TPS      TP+ +   + N L+SP   ++P     FSP
Sbjct: 1475 ELQLPSYIDGLDFGM------TPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQFSP 1528

Query: 952  SVAG 955
             V G
Sbjct: 1529 YVGG 1532



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 777  SQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 836

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 837  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 878



 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 93/154 (60%), Gaps = 33/154 (21%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTD 1586
            L  VT  T ++YDPDP +T+I ED +FV  YYEMPD +  P +ISPWLLRIEL+R+ M D
Sbjct: 1162 LRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVD 1221

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+EKIN  F DDL CIFNDDNAEKL
Sbjct: 1222 KKLS----------------------------MANIAEKINLEFDDDLTCIFNDDNAEKL 1253

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            +LRIRIMN +  K +  +++    EDD+FL+ IE
Sbjct: 1254 ILRIRIMNDEAPKGELTDESA---EDDVFLKKIE 1284



 Score =  120 bits (301), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1367 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1426

Query: 576  DVLMDAAAHAEADPMRGYIQRRLIKAMESV 605
            D+L+DAA +AE D +RG  +  ++  +  +
Sbjct: 1427 DILLDAAVYAETDHLRGVTENIMLGQLAPI 1456



 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  K+FE
Sbjct: 853 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFE 912

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R++  +E                        L + + D  + ++ R +F        
Sbjct: 913 RIFRYEFEDENWKPNYM-----------------LPEHVEDLKTIREFRNVF-------- 947

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                     E E +KL  DR  L  EI ++GE++  +P NL  +I   Q+
Sbjct: 948 ----------EAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQK 988



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F+ K V  NT ++++
Sbjct: 514  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLMWWE 567



 Score = 42.7 bits (99), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 41/53 (77%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+  +LG++PK+ARPDWM++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 227 EDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 279


>gi|326498629|dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1859

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/419 (54%), Positives = 285/419 (68%), Gaps = 52/419 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P IL+P+P+WTGKQVF+LIIP  +N+ R  + H + E SG   
Sbjct: 559 FMNILMWWEDFDGKVPAPAILRPRPIWTGKQVFNLIIPKLINLIRFSAWHAETE-SG--- 614

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 615 FITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 674

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G SIGIGDTIAD  T  +I   I  AK +V E+I++A   +LEP PG         
Sbjct: 675 LLQNGFSIGIGDTIADAATMEKINETIGTAKNEVKELIKQAQEKNLEPEPGR-------- 726

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 727 --------------------------------------TMMESFENRVNQVLNKARDDAG 748

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KD
Sbjct: 749 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 808

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 809 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 868

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRF--DPSNERPT 491
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F++ +R+  D  N RPT
Sbjct: 869 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDNVFRYELDDENWRPT 927



 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/502 (45%), Positives = 311/502 (61%), Gaps = 61/502 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F  L+RST  +K V + YRL+ E+FEW++GEIE+RF Q+   
Sbjct: 1019 VPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVA 1078

Query: 1010 --QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
              ++I CV  Q++ G+                    P ++  +   + AG++        
Sbjct: 1079 PGEMIGCVAAQSI-GE--------------------PATQMTLNTFHYAGVSAKNVTLGV 1117

Query: 1068 MGGREGLIDTAVKTAETVNVLVFL-----------------------FQVTANTAIYYDP 1104
               RE  I    K  +T ++ VFL                         VT  T I+YDP
Sbjct: 1118 PRLRE--IINVAKKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDP 1175

Query: 1105 DPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINA 1162
            DP  T+I ED EFV  YYEMPD   DP +ISPWLLRIEL+R+ M DKKL+M  I+EKIN 
Sbjct: 1176 DPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINH 1235

Query: 1163 GFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMT 1222
             F DDL+CIFNDDNA+KL+LR+RI N +  K + ++++    EDD+FL+ IE NML++M 
Sbjct: 1236 EFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESA---EDDVFLKKIEGNMLTEMA 1292

Query: 1223 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1282
            L+GI  I KV++   + +        ES  FK   +W+L+T+G +L+ V+   DVD  RT
Sbjct: 1293 LRGIPDINKVFIKYGKVNK-----FDESEGFKPDNEWMLDTEGVNLLAVMCHEDVDSTRT 1347

Query: 1283 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1342
             SN + E+ +VLGIEAVR+S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRH
Sbjct: 1348 TSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRH 1407

Query: 1343 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDA 1402
            GINR DTG LMRCSFEETVD+L+DAA +AE+D +RGV+ENI++GQL  +GTG   L L+ 
Sbjct: 1408 GINRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLND 1467

Query: 1403 EKCKDGIEIPLATGMMGGPAGM 1424
            +  +  IE+ L + + G   GM
Sbjct: 1468 QMLQQAIELQLPSYVEGLDYGM 1489



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/186 (48%), Positives = 124/186 (66%), Gaps = 11/186 (5%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DT
Sbjct: 1355 VIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1414

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G LMRCSFEETVD+L+DAA +AE+D +RGV+ENI++GQL  +GTG   L L+ +  +  I
Sbjct: 1415 GPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAI 1474

Query: 893  EIPLATGMMGGPAGMFFGS---AATP----SSMSPQMTPWAQSTPAYNALMSPGAAMTPG 945
            E+ L + + G   GM       +ATP      MSP ++P  +++P  +A  SP      G
Sbjct: 1475 ELQLPSYVEGLDYGMTPARSPMSATPYRDGGMMSPMLSPNFRASPITDAQFSPYV----G 1530

Query: 946  GPGFSP 951
            G  FSP
Sbjct: 1531 GMAFSP 1536



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 777  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 836

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 837  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 878



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 92/156 (58%), Gaps = 37/156 (23%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTD 1586
            L  VT  T I+YDPDP  T+I ED EFV  YYEMPD   DP +ISPWLLRIEL+R+ M D
Sbjct: 1162 LRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMVD 1221

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+EKIN  F DDL+CIFNDDNA+KL
Sbjct: 1222 KKLS----------------------------MADIAEKINHEFDDDLSCIFNDDNADKL 1253

Query: 1647 VLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIE 1680
            +LR+RI N +  K  +QDE       EDD+FL+ IE
Sbjct: 1254 ILRVRITNDEAPKGEIQDE-----SAEDDVFLKKIE 1284



 Score =  121 bits (304), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 69/90 (76%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETV
Sbjct: 1367 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1426

Query: 576  DVLMDAAAHAEADPMRGYIQRRLIKAMESV 605
            D+L+DAA +AE+D +RG  +  ++  +  +
Sbjct: 1427 DILLDAAVYAESDYLRGVTENIMLGQLAPI 1456



 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 853 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFD 912

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + +R++           +++  R      D + +L+       + ++ R +F        
Sbjct: 913 NVFRYE----------LDDENWRPTYMLPDHVDDLK-------TIREFRNVF-------- 947

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                     E E +KL  DR  L  EI ++G++   +P NL  +I+  Q+
Sbjct: 948 ----------EAEVQKLEADRLQLGTEITTTGDNTWPMPVNLKRLIWNAQK 988



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            V  + + P+ I++PQ NRPVMGIVQDTL   RK+TKRD  ++K
Sbjct: 514  VLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIEK 556



 Score = 44.3 bits (103), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 42/53 (79%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+ ++LG++PK+ARPDWM++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 227 EDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 279


>gi|170652048|gb|ACB21801.1| RNA polymerase II [Epicharis sp. MP125]
          Length = 241

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/283 (77%), Positives = 230/283 (81%), Gaps = 46/283 (16%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 5   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 64

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 65  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 124

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 125 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 178

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 179 ----------------------------------------NTLRQTFENQVNRILNDARD 198

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 354
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNI ISQVIACVGQQNV
Sbjct: 199 KTGGSAKKSLTEYNNLKAMVVSGSKGSNIYISQVIACVGQQNV 241


>gi|1945435|gb|AAC49712.1| RNA polymerase II largest subunit [Spirogyra sp.]
          Length = 613

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/455 (52%), Positives = 287/455 (63%), Gaps = 63/455 (13%)

Query: 47  MLVTVLPVPPLSVRPA-------------VVMHGSARNQEQMMNILMFLPIWDGKMPQPC 93
           M+V    V P S RP              V    +   ++  MNILM+   ++GK+P P 
Sbjct: 28  MMVPKCVVSPQSNRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFEGKIPSPT 87

Query: 94  ILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMG 153
           ILKP+PLWTGKQVFSLIIP  VN+ R  + HPD E        SPGDT+V VE G LL G
Sbjct: 88  ILKPRPLWTGKQVFSLIIPRAVNLERYSAWHPDSERGD----FSPGDTQVRVEKGELLAG 143

Query: 154 ILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQT 213
           ILCKKSLGTS GSL+HI + E+G +   +F G+ Q +VN WLL +G              
Sbjct: 144 ILCKKSLGTSGGSLVHIIWEEVGPDAARKFLGHTQWLVNYWLLQQGF------------- 190

Query: 214 YLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKED 273
                                            SIGIGDTIAD  T   I   I KAK +
Sbjct: 191 ---------------------------------SIGIGDTIADASTMDTINETIAKAKTE 217

Query: 274 VIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVA 333
           V ++I+ A    LE  PG TL ++FEN+VN++LN ARD  G +A+ SL+E NN+KAMV A
Sbjct: 218 VKDLIEAACEKQLEAQPGRTLMESFENRVNQVLNKARDDAGRAAQSSLSESNNVKAMVTA 277

Query: 334 GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 393
           GSKGS INISQ+IACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLT
Sbjct: 278 GSKGSFINISQMIACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLT 337

Query: 394 PSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYG 453
           P EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME VMV YD TVRNS+G +IQ  YG
Sbjct: 338 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYG 397

Query: 454 EDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
           EDG+    +E Q + ++ ++   F+  YR++   E
Sbjct: 398 EDGMDAVWIESQSLPSMKMNKSTFDATYRYEIDQE 432



 Score =  155 bits (391), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/102 (70%), Positives = 82/102 (80%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+IACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 287  SQMIACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 346

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 347  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSL 388



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 54/73 (73%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV- 1011
            V G+D +S++A +NATL F CL+RST+ +K V ++YRL+ EAF+W++GEIE RF Q+QV 
Sbjct: 529  VVGDDHISREAQKNATLFFNCLLRSTMSSKQVLKDYRLNMEAFQWVIGEIEARFLQSQVA 588

Query: 1012 ----IACVGQQNV 1020
                I CV  Q++
Sbjct: 589  PGEMIGCVAAQSI 601



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME VMV YD TVRNS+G +IQ  YGEDG+    +E Q + ++ ++   F+
Sbjct: 363 GYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQSLPSMKMNKSTFD 422

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             YR++         I  ED   + M   D     + ++V  F     R++ + +VL   
Sbjct: 423 ATYRYE---------IDQEDWSPDYM---DPQFAKDAKIVAEF-----RQVMDAEVL--- 462

Query: 712 MGSGDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVIFILQR 761
                          +L +DR  L  EI  +G+S+  LP N+  +I+  Q+
Sbjct: 463 ---------------QLEQDRRTLGLEIAPTGDSSWPLPVNIKRLIWNAQK 498



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 39/51 (76%), Gaps = 1/51 (1%)

Query: 1492 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            + + P+ +++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 27   LMMVPKCVVSPQSNRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWE 77


>gi|413917378|gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
          Length = 1850

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/418 (54%), Positives = 279/418 (66%), Gaps = 52/418 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+P+WTGKQVF+LIIP  +N+ R  + H ++E      
Sbjct: 558 FMNILMWWQDFDGKIPAPTILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSEEEKG---- 613

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT V +E G LL G LCKKSLGT SGSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 614 FITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 673

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G SIGIGDTIAD  T   I   I KAK  V E+I+KAH   LE  PG         
Sbjct: 674 LLQNGFSIGIGDTIADASTMETINDTISKAKNAVKELIKKAHEKQLEAEPGR-------- 725

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 726 --------------------------------------TMMESFENRVNQVLNKARDDAG 747

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+ SL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KD
Sbjct: 748 SSAQNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKD 807

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 808 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 867

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRF--DPSNERP 490
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F++ +R+  D  N RP
Sbjct: 868 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDNVFRYELDDENWRP 925



 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/517 (45%), Positives = 317/517 (61%), Gaps = 65/517 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F  L+RST  +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 1018 VPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVA 1077

Query: 1010 --QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
              ++I CV  Q++ G+                    P ++  +   + AG++        
Sbjct: 1078 PGEMIGCVAAQSI-GE--------------------PATQMTLNTFHYAGVSAKNVTLGV 1116

Query: 1068 MGGREGLIDTAVKTAETVNVLVFL-----------------------FQVTANTAIYYDP 1104
               RE  I    K  +T ++ V+L                         VT  T I+YDP
Sbjct: 1117 PRLRE--IINVAKKIKTPSLSVYLKPQVNQKKELAKNVQCALEYTTLRSVTHATEIWYDP 1174

Query: 1105 DPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINA 1162
            DP  T+I ED EFV  YYEMPD   DP +ISPWLLRIEL+R+ M DKKL+M  I+EKIN 
Sbjct: 1175 DPLGTIIEEDTEFVQSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINR 1234

Query: 1163 GFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMT 1222
             F DDL+CIFNDDNA+KL+LRIRI N +  K + ++++    EDD+FL+ IE NML++M 
Sbjct: 1235 EFDDDLSCIFNDDNADKLILRIRITNDEAPKGEIQDESA---EDDVFLKKIEGNMLTEMA 1291

Query: 1223 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1282
            L+GI  I KV++     + K      + G FKA  +W+L+T+G +L+ V+   DVD  RT
Sbjct: 1292 LRGIPDINKVFIK----EGKVNTFYQDDG-FKAANEWMLDTEGVNLLAVMCHEDVDATRT 1346

Query: 1283 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1342
             SN + E+ +VLGIEAVR+S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRH
Sbjct: 1347 TSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRH 1406

Query: 1343 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDA 1402
            GINR DTG LMRCSFEETVD+L+DAA +AE+D +RGV+ENI++GQL  +GTG   L L+ 
Sbjct: 1407 GINRNDTGPLMRCSFEETVDILLDAAVYAESDHLRGVTENIMLGQLAPIGTGGCALYLND 1466

Query: 1403 EKCKDGIEIPLATGMMGGPAGMFFGSAATPSSIPGPP 1439
            +  +  IE+ L + +     G+ FG     S I G P
Sbjct: 1467 QMLQQAIELQLPSYV----EGLDFGMTPARSPITGTP 1499



 Score =  164 bits (416), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 83/172 (48%), Positives = 117/172 (68%), Gaps = 12/172 (6%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DT
Sbjct: 1354 VIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1413

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G LMRCSFEETVD+L+DAA +AE+D +RGV+ENI++GQL  +GTG   L L+ +  +  I
Sbjct: 1414 GPLMRCSFEETVDILLDAAVYAESDHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAI 1473

Query: 893  EIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTP 944
            E+ L + +     G+ FG       M+P  +P    TP +  +MSP   ++P
Sbjct: 1474 ELQLPSYV----EGLDFG-------MTPARSP-ITGTPYHEGMMSPSYLLSP 1513



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 776  SQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 835

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 836  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 877



 Score =  133 bits (334), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/154 (48%), Positives = 93/154 (60%), Gaps = 33/154 (21%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTD 1586
            L  VT  T I+YDPDP  T+I ED EFV  YYEMPD   DP +ISPWLLRIEL+R+ M D
Sbjct: 1161 LRSVTHATEIWYDPDPLGTIIEEDTEFVQSYYEMPDEDIDPDKISPWLLRIELNREMMVD 1220

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+EKIN  F DDL+CIFNDDNA+KL
Sbjct: 1221 KKLS----------------------------MADIAEKINREFDDDLSCIFNDDNADKL 1252

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            +LRIRI N +  K + ++++    EDD+FL+ IE
Sbjct: 1253 ILRIRITNDEAPKGEIQDESA---EDDVFLKKIE 1283



 Score =  122 bits (305), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 69/90 (76%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETV
Sbjct: 1366 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1425

Query: 576  DVLMDAAAHAEADPMRGYIQRRLIKAMESV 605
            D+L+DAA +AE+D +RG  +  ++  +  +
Sbjct: 1426 DILLDAAVYAESDHLRGVTENIMLGQLAPI 1455



 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 852 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFD 911

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + +R++  +E                        L + + D  + ++ R +F        
Sbjct: 912 NVFRYELDDENWRPNYM-----------------LPEHVDDLKTIREFRNVF-------- 946

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                     E E +KL  DR  L  EI ++G+++  +P NL  +I+  Q+
Sbjct: 947 ----------EAEVQKLEADRYQLGSEITTTGDNSWPMPVNLKRLIWNAQK 987



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 33/43 (76%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD  ++K
Sbjct: 513  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEK 555


>gi|302813666|ref|XP_002988518.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
 gi|300143625|gb|EFJ10314.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
          Length = 1797

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/414 (55%), Positives = 278/414 (67%), Gaps = 50/414 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P I+KP+P+WTGKQ+FSLIIP  +NM RT + H D E      
Sbjct: 570 FMNILMWWEDFDGKVPTPAIVKPRPIWTGKQIFSLIIPKQINMVRTAAWHNDSETGDN-- 627

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
             SPGDT V +E G LL G LCKK+LGTSSGSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 628 --SPGDTMVRIEKGELLTGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 685

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G SIGIGDTIAD  T  +I   I KAK +V ++I+ A    LE  PG         
Sbjct: 686 LLQHGFSIGIGDTIADSATMEKINDTIFKAKNEVKDLIKIAQEKQLESQPGR-------- 737

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD+ G
Sbjct: 738 --------------------------------------TMMESFENRVNQVLNRARDEAG 759

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NN+KAMV AGSKGS INISQ+IACVGQQNVEGKRIPFGF  RTLPHF KD
Sbjct: 760 SSAQKSLSESNNVKAMVTAGSKGSFINISQMIACVGQQNVEGKRIPFGFIDRTLPHFTKD 819

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAVKT+ETGYIQRRL+KAME VMV
Sbjct: 820 DYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVMV 879

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
            YD TVRNS+G +IQ  YGEDG+    +E Q +D++ +  K F+  Y+F+  NE
Sbjct: 880 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQHLDSIKMKKKNFDMTYKFEVDNE 933



 Score =  422 bits (1084), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 240/508 (47%), Positives = 314/508 (61%), Gaps = 59/508 (11%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F CL+RST  +K V + YRL+ EAFEW++GEIE RF Q+   
Sbjct: 1030 VPGDDPISIEAQKNATLFFNCLLRSTFASKRVLKEYRLTKEAFEWVIGEIETRFLQSLVA 1089

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              ++I CV  Q+                 V  K +  G  R R + +  K    P     
Sbjct: 1090 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP----- 1144

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV---FLFQVTANTAIYYDPDP 1106
               S    L P              +    + A+ V   +    L  VT  T I+YDPDP
Sbjct: 1145 ---SLYVHLKPE-------------VSKEKERAKNVQCALEYTTLRSVTQATEIWYDPDP 1188

Query: 1107 QNTVIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
             +T+I ED EFV  YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  I+EKIN  F
Sbjct: 1189 MSTIIEEDVEFVKSYYEMPDEDVTPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEF 1248

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
             DDL CIFNDDNAEKL+LR+RIMN D SK  +    VD+ +DD+FL+ IE+NML++M L+
Sbjct: 1249 VDDLTCIFNDDNAEKLILRVRIMNDDVSKGGE----VDQSDDDVFLKKIESNMLTEMALR 1304

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GI  I KV++        KR    E   FK   +W+L+T+G +++ V+   DVD  RT S
Sbjct: 1305 GIPDIHKVFIR-----EHKRQRFDEHEGFKTETEWMLDTEGVNMLAVMCNEDVDATRTVS 1359

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            N + E+ +VLGIEAVR+++ KE+  V+ F G YVNYRHLA+LCDVMT +GHLMAITRHGI
Sbjct: 1360 NHLIEVIEVLGIEAVRQALLKELREVISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGI 1419

Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            NR DTG +MRCSFEETVD+L+DAA  AEAD +RGV+ENI++GQL  +GTG F LLL+ + 
Sbjct: 1420 NRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGDFGLLLNDKM 1479

Query: 1405 CKDGIEIPLATGMMGGPAGMFFGSAATP 1432
             +  IE+ L + M     G+  G   TP
Sbjct: 1480 LEHAIELQLPSYMETADFGL-GGVTGTP 1506



 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/193 (48%), Positives = 129/193 (66%), Gaps = 14/193 (7%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+++ KE+  V+ F G YVNYRHLA+LCDVMT +GHLMAITRHGINR DT
Sbjct: 1365 VIEVLGIEAVRQALLKELREVISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRNDT 1424

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G +MRCSFEETVD+L+DAA  AEAD +RGV+ENI++GQL  +GTG F LLL+ +  +  I
Sbjct: 1425 GPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGDFGLLLNDKMLEHAI 1484

Query: 893  EIPLATGMMGGPAGMFFGSAATPSS---MSPQ--MTPWAQSTPAYNALMSP---GAAMTP 944
            E+ L + M     G+  G   TP     MSP   ++P  +++P  +A  SP   G   +P
Sbjct: 1485 ELQLPSYMETADFGL-GGVTGTPHHEGMMSPSYLLSPNLRASPITDAQFSPYVGGITFSP 1543

Query: 945  GG-----PGFSPS 952
            G      P +SP+
Sbjct: 1544 GAYSPLSPAYSPA 1556



 Score =  156 bits (394), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/190 (47%), Positives = 110/190 (57%), Gaps = 11/190 (5%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+IACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 788  SQMIACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFYFHAM 847

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++     + +   Y     D
Sbjct: 848  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSL----GDVIQFLYGEDGMD 903

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN 1188
                  W+    LD  +M  K   M    E  N  +  D       D AE +     I N
Sbjct: 904  AV----WIESQHLDSIKMKKKNFDMTYKFEVDNENWNPDY---MASDCAEDIKTIQEIRN 956

Query: 1189 SDDSKMQDEE 1198
              D+++Q  E
Sbjct: 957  VFDAEVQKLE 966



 Score =  138 bits (347), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 94/154 (61%), Gaps = 34/154 (22%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTD 1586
            L  VT  T I+YDPDP +T+I ED EFV  YYEMPD D  P +ISPWLLRIEL+R+ M D
Sbjct: 1173 LRSVTQATEIWYDPDPMSTIIEEDVEFVKSYYEMPDEDVTPDKISPWLLRIELNREMMVD 1232

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+EKIN  F DDL CIFNDDNAEKL
Sbjct: 1233 KKLS----------------------------MADIAEKINLEFVDDLTCIFNDDNAEKL 1264

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            +LR+RIMN D SK  +    VD+ +DD+FL+ IE
Sbjct: 1265 ILRVRIMNDDVSKGGE----VDQSDDDVFLKKIE 1294



 Score =  123 bits (308), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 68/87 (78%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            KE+  V+ F G YVNYRHLA+LCDVMT +GHLMAITRHGINR DTG +MRCSFEETVD+L
Sbjct: 1380 KELREVISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1439

Query: 579  MDAAAHAEADPMRGYIQRRLIKAMESV 605
            +DAA  AEAD +RG  +  ++  +  +
Sbjct: 1440 LDAAVFAEADHLRGVTENIMLGQLAPI 1466



 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME VMV YD TVRNS+G +IQ  YGEDG+    +E Q +D++ +  K F+
Sbjct: 864 GYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQHLDSIKMKKKNFD 923

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             Y+F+  NE      +N D +     + D   +++       + +++R +F+ +V    
Sbjct: 924 MTYKFEVDNEN-----WNPDYM-----ASDCAEDIK-------TIQEIRNVFDAEV---- 962

Query: 712 MGSGDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVIFILQR 761
                         +KL  DR+ L  EI +SGE +  LP NL  +I+  Q+
Sbjct: 963 --------------QKLEADRKQLGLEIATSGEPHWPLPVNLKRLIWNAQK 999



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPV+GIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 525  VSELMIVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWE 578



 Score = 48.5 bits (114), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 41/53 (77%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           EE  ILG+DP+FARPDWM++ VLP+PP  VRP+V+M  SAR+++ + + L  +
Sbjct: 238 EECRILGLDPQFARPDWMILQVLPIPPPPVRPSVMMDSSARSEDDLTHQLAMI 290


>gi|168066799|ref|XP_001785319.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663074|gb|EDQ49860.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1742

 Score =  445 bits (1144), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/408 (55%), Positives = 275/408 (67%), Gaps = 50/408 (12%)

Query: 77  NILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWI 136
           NILM+   +DGK+P P ILKP+PLWTGKQ+FSLIIP  +N+ R    HPD    G Y  +
Sbjct: 564 NILMWWEEFDGKIPIPTILKPRPLWTGKQIFSLIIPKQINLMRQAFWHPD----GEYGDL 619

Query: 137 SPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLL 196
           SPGDT+V +E G ++ G LCKK+LGT  GSL+H+ + E+G +   +F G+ Q +VN WLL
Sbjct: 620 SPGDTQVRIEKGEVVAGTLCKKTLGTGQGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 679

Query: 197 LEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIAD 256
            +G                                               SIGIGDTIAD
Sbjct: 680 QQGF----------------------------------------------SIGIGDTIAD 693

Query: 257 PQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGS 316
             T  +I   I KAK DV ++I+KA +  LE  PG T++++FEN+VN ILN ARD  G S
Sbjct: 694 AATMEKINETITKAKHDVKDLIKKAQDKQLEAQPGRTMKESFENRVNGILNKARDDAGAS 753

Query: 317 AKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDY 376
           A+KSL E NNLKAMV AGSKG+ INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KDDY
Sbjct: 754 AQKSLAESNNLKAMVTAGSKGTFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFTKDDY 813

Query: 377 GPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHY 436
           GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME VMV Y
Sbjct: 814 GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKY 873

Query: 437 DCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           D TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F   YRF+
Sbjct: 874 DGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKAEFNRVYRFE 921



 Score =  412 bits (1058), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/493 (46%), Positives = 309/493 (62%), Gaps = 62/493 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRF-----Q 1007
            V G DQ+S +A  NATL F CL+RSTL +K V ++YRL+ EAFEW++GE+E RF      
Sbjct: 1022 VPGNDQISMEAQRNATLFFGCLLRSTLASKRVLKDYRLTREAFEWVIGEVETRFLMSLVA 1081

Query: 1008 QAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
              ++I CV  Q++ G+                    P ++  +   + AG++        
Sbjct: 1082 PGEMIGCVAAQSI-GE--------------------PATQMTLNTFHFAGVSAKNVTLGV 1120

Query: 1068 MGGREGLIDTAVKTAETVNVLVFL-----------------------FQVTANTAIYYDP 1104
               RE  I    K  +T ++ V+L                         VT  T I+YDP
Sbjct: 1121 PRLRE--IINVAKKIKTPSLTVYLKPGVNKEKERAKNVQCALEYTTLRSVTQATEIWYDP 1178

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEAISEKINA 1162
            +P +T+I ED EFV  YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  I+EKIN 
Sbjct: 1179 EPMSTLIEEDMEFVKSYYEMPDEDVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINL 1238

Query: 1163 GFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMT 1222
             F DDL CIFNDDNAEKL+LRIRIMN +  K +  E +    EDD+FL+ IE+NML++M 
Sbjct: 1239 EFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEMTEQS----EDDVFLKKIESNMLTEMA 1294

Query: 1223 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1282
            L+GI  I KV++   + D K R    E+  F    +W+L+T+G +++ V+   DVD  RT
Sbjct: 1295 LRGIPDIRKVFI---KEDKKNRF--DENLAFVVEQEWVLDTEGVNMLAVMCHEDVDASRT 1349

Query: 1283 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1342
             SN + E+ +VLGIEAVR S+ KE+  V+ F G YVNYRHLA+LCDVMT +GHLMAITRH
Sbjct: 1350 TSNHLIEVIEVLGIEAVRNSLLKELRDVISFDGSYVNYRHLAILCDVMTYRGHLMAITRH 1409

Query: 1343 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDA 1402
            GINR DTG +MRCSFEETVD+L+DAA +AEAD ++GV+ENI++GQL  +GTG F L L+ 
Sbjct: 1410 GINRNDTGPMMRCSFEETVDILLDAAVYAEADHLKGVTENIMLGQLAPIGTGDFGLHLNE 1469

Query: 1403 EKCKDGIEIPLAT 1415
            +  +  IE+ L +
Sbjct: 1470 DMLQHAIELQLPS 1482



 Score =  167 bits (422), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 85/172 (49%), Positives = 116/172 (67%), Gaps = 13/172 (7%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR S+ KE+  V+ F G YVNYRHLA+LCDVMT +GHLMAITRHGINR DT
Sbjct: 1357 VIEVLGIEAVRNSLLKELRDVISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRNDT 1416

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G +MRCSFEETVD+L+DAA +AEAD ++GV+ENI++GQL  +GTG F L L+ +  +  I
Sbjct: 1417 GPMMRCSFEETVDILLDAAVYAEADHLKGVTENIMLGQLAPIGTGDFGLHLNEDMLQHAI 1476

Query: 893  EIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTP 944
            E+ L +              AT   M+P  TP    TP  + +MSP   ++P
Sbjct: 1477 ELQLPS------------FEATDYGMTPSRTPMI-GTPHNDGMMSPSYLLSP 1515



 Score =  151 bits (382), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 780  SQMTACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 839

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 840  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSL 881



 Score =  133 bits (335), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 92/154 (59%), Gaps = 34/154 (22%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTD 1586
            L  VT  T I+YDP+P +T+I ED EFV  YYEMPD D  P +ISPWLLRIEL+R+ M D
Sbjct: 1165 LRSVTQATEIWYDPEPMSTLIEEDMEFVKSYYEMPDEDVAPEKISPWLLRIELNREMMVD 1224

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+EKIN  F DDL CIFNDDNAEKL
Sbjct: 1225 KKLS----------------------------MADIAEKINLEFDDDLTCIFNDDNAEKL 1256

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            +LRIRIMN +  K +  E +    EDD+FL+ IE
Sbjct: 1257 ILRIRIMNDEAPKGEMTEQS----EDDVFLKKIE 1286



 Score =  124 bits (310), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 71/90 (78%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            S+ KE+  V+ F G YVNYRHLA+LCDVMT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1369 SLLKELRDVISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1428

Query: 576  DVLMDAAAHAEADPMRGYIQRRLIKAMESV 605
            D+L+DAA +AEAD ++G  +  ++  +  +
Sbjct: 1429 DILLDAAVYAEADHLKGVTENIMLGQLAPI 1458



 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 34/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME VMV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F 
Sbjct: 856 GYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKAEFN 915

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             YRF+         I  +D   + M S +   +++       + +++R +F+ +V    
Sbjct: 916 RVYRFE---------IDRDDWAPDYM-SAEAAEDIK-------TIQEIRNVFDAEV---- 954

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                  S+LE       + R+   EI  +GESN  LP NL  +I+  Q+
Sbjct: 955 -------SKLE------ADRRQMGLEIAPTGESNWPLPVNLKRLIWNAQK 991



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 34/43 (79%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            V  + + P+ I++PQ+NRPV+GIVQDTL   RK+TKRD F++K
Sbjct: 517  VLELMMVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEK 559



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 41/53 (77%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           EE  +LG++PK+ARPDWM++ VLP+PP  VRP+V+M  SAR+++ + + L  +
Sbjct: 230 EECTLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDSSARSEDDLTHQLAMI 282


>gi|68300816|gb|AAY89349.1| RNA polymerase II largest subunit [Antirrhinum majus]
          Length = 780

 Score =  445 bits (1144), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/481 (50%), Positives = 303/481 (62%), Gaps = 71/481 (14%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ R  + H + E      
Sbjct: 236 FMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQINLLRYSAWHQEKEKG---- 291

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT+V +E G LL G LCKK+LGT +GSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 292 FITPGDTQVRIEKGELLTGTLCKKTLGTGTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 351

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL                                    Q A           SIGIGDTI
Sbjct: 352 LL------------------------------------QNAF----------SIGIGDTI 365

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD  T  +I   I+ AK +V E+I+ A    LE  PG T+ ++FEN+VN++LN ARD  G
Sbjct: 366 ADAATMEKINETIQNAKNEVKELIRAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAG 425

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E+NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KD
Sbjct: 426 SSAQKSLSEHNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKD 485

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 486 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 545

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRF--DPSNERPT- 491
            YD TVRNS+G +IQ  YGEDG+    +E Q ++++ L    F D YR+  D SN  P+ 
Sbjct: 546 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQPLESLKLKKSDFNDMYRYEIDSSNWNPSY 605

Query: 492 --------LRNVSSLRRVVNSKPLLIGCWKLTSVEKEMNTVLQFYG-----LYVNYRHLA 538
                   L+ +  +R V +++       KL +   ++ T +   G     L VN R L 
Sbjct: 606 MLSEAVEDLKTIREIRSVFDAE-----VQKLEADRFQLGTGIATTGDNSWPLPVNIRRLV 660

Query: 539 L 539
           L
Sbjct: 661 L 661



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 454  SQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 513

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 514  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 555



 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 49/71 (69%), Gaps = 2/71 (2%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q ++++ L    F 
Sbjct: 530 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQPLESLKLKKSDFN 589

Query: 652 DKYRF--DPSN 660
           D YR+  D SN
Sbjct: 590 DMYRYEIDSSN 600



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 51/73 (69%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS +A +NATL F  L+RS L +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 696  VVGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVA 755

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 756  AGEMIGCVAAQSI 768



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 191  VLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 244


>gi|33326203|gb|AAQ08511.1| RNA polymerase II largest subunit [Zamia muricata]
          Length = 1013

 Score =  444 bits (1143), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/414 (54%), Positives = 278/414 (67%), Gaps = 50/414 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ R  + H + E      
Sbjct: 481 FMNILMWWEDFDGKIPSPTILKPRPLWTGKQVFNLIIPRQINLIRYSAWHSESETG---- 536

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT V +E G +L G LCKK+LGTSSGSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 537 FITPGDTVVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 596

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL +G SIGIGDTIAD  T   I   I KAK +V  +IQ AH   LE  PG         
Sbjct: 597 LLQQGFSIGIGDTIADAATMETINETISKAKNEVNHLIQLAHQKALEAXPGR-------- 648

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 649 --------------------------------------TMMESFENRVNQVLNKARDDAG 670

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFG   R+LPHF +D
Sbjct: 671 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGLFGRSLPHFTRD 730

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 731 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 790

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +FE+ YR++  NE
Sbjct: 791 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRPEFENVYRYEIDNE 844



 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 80/102 (78%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFG   R+LPHF +DDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 699  SQMTACVGQQNVEGKRIPFGLFGRSLPHFTRDDYGPESRGFVENSYLRGLTPQEFFFHAM 758

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 759  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 800



 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +FE
Sbjct: 775 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRPEFE 834

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + YR++  NE      +N   +            L + + D  + ++ + +F+ +V    
Sbjct: 835 NVYRYEIDNEN-----WNPSYM------------LPEHVEDLKTIREFQNVFDAEV---- 873

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                         +KL  DR  L  EI  SG+++  +P NL  +I+  Q+
Sbjct: 874 --------------QKLEADRRQLGTEIAPSGDNSWPMPVNLKRLIWNAQK 910



 Score = 75.1 bits (183), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 51/73 (69%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F  L+RST  +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 941  VPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVA 1000

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 1001 PGEMIGCVAAQSI 1013



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 41/53 (77%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+  +LG++PK+ARPDWM++ VLP+P   VRP+V+M+ +AR+++ + + L  +
Sbjct: 149 EDCQLLGLNPKYARPDWMILQVLPIPSPPVRPSVMMNTTARSEDDLTHQLAMI 201



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 436  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 489


>gi|194460371|gb|ACF71860.1| RNA polymerase II [Euglossa decorata]
          Length = 233

 Score =  444 bits (1143), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/279 (78%), Positives = 228/279 (81%), Gaps = 46/279 (16%)

Query: 98  KPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCK 157
           KPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCK
Sbjct: 1   KPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCK 60

Query: 158 KSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEI 217
           K+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGIGDTIADPQTYLEI
Sbjct: 61  KTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEI 120

Query: 218 QMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEV 277
           Q AIKKAKEDVIEVIQKAHNM+LEPTPG                                
Sbjct: 121 QKAIKKAKEDVIEVIQKAHNMELEPTPG-------------------------------- 148

Query: 278 IQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKG 337
                         NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKG
Sbjct: 149 --------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKG 194

Query: 338 SNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDY 376
           SNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDY
Sbjct: 195 SNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDY 233



 Score = 77.4 bits (189), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/34 (97%), Positives = 34/34 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDY 1042
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDY
Sbjct: 200  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDY 233


>gi|225459758|ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
           vinifera]
          Length = 1848

 Score =  444 bits (1143), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/418 (54%), Positives = 280/418 (66%), Gaps = 52/418 (12%)

Query: 76  MNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQW 135
           MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ RT + H + E      +
Sbjct: 560 MNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLLRTSAWHSESETG----F 615

Query: 136 ISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWL 195
           I+PGDT+V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +VN WL
Sbjct: 616 ITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 675

Query: 196 LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIA 255
           L  G SIGIGDTIAD  T  +I   I KAK +V E+I+ A    LE  PG          
Sbjct: 676 LQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQLEAEPGR--------- 726

Query: 256 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG 315
                                                T+ ++FEN+VN++LN ARD  G 
Sbjct: 727 -------------------------------------TMMESFENRVNQVLNKARDDAGS 749

Query: 316 SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD 375
           SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KDD
Sbjct: 750 SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDD 809

Query: 376 YGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVH 435
           YGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV 
Sbjct: 810 YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 869

Query: 436 YDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNERPT 491
           YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+   KY  D  N  P+
Sbjct: 870 YDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPS 927



 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 236/519 (45%), Positives = 317/519 (61%), Gaps = 69/519 (13%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F  L+RST  +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 1019 VPGDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVA 1078

Query: 1010 --QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
              ++I CV  Q++ G+                    P ++  +   + AG++        
Sbjct: 1079 PGEMIGCVAAQSI-GE--------------------PATQMTLNTFHYAGVSAKNVTLGV 1117

Query: 1068 MGGREGLIDTAVKTAETVNVLVFL-----------------------FQVTANTAIYYDP 1104
               RE  I    K  +T ++ V+L                         VT  T ++YDP
Sbjct: 1118 PRLRE--IINVAKKIKTPSLSVYLKPDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDP 1175

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEAISEKINA 1162
            DP +T+I ED +FV  YYEMPD +  P +ISPWLLRIEL+R+ M DKKL+M  I+EKIN 
Sbjct: 1176 DPMSTIIEEDVDFVKSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINL 1235

Query: 1163 GFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSD 1220
             F DDL CIFNDDNAEKL+LRIRIMN +  K  +QDE       EDD+FL+ IE+NML++
Sbjct: 1236 EFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELQDE-----SAEDDVFLKKIESNMLTE 1290

Query: 1221 MTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPV 1280
            M L+GI  I KV++      S K     ES  FK   +W+L+T+G +L+ V+   DVD  
Sbjct: 1291 MALRGIPDINKVFIK-----SGKVNKFDESEGFKPEVEWMLDTEGVNLLAVMCHEDVDAR 1345

Query: 1281 RTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAIT 1340
            RT SN + E+ +VLGIEAVR+S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAIT
Sbjct: 1346 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1405

Query: 1341 RHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1400
            RHGINR DTG +MRCSFEETVD+L+DAA +AE D +RGV+ENI++GQL  +GTG   L L
Sbjct: 1406 RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDFLRGVTENIMLGQLAPIGTGDCALYL 1465

Query: 1401 DAEKCKDGIEIPLATGMMGGPAGMFFGSAATPSSIPGPP 1439
            + +  +  IE+ L + M     G+ FG   + S I G P
Sbjct: 1466 NDQMLQHAIELQLPSYM----EGLDFGMTPSRSPITGTP 1500



 Score =  167 bits (424), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/184 (48%), Positives = 120/184 (65%), Gaps = 7/184 (3%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DT
Sbjct: 1355 VIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1414

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G +MRCSFEETVD+L+DAA +AE D +RGV+ENI++GQL  +GTG   L L+ +  +  I
Sbjct: 1415 GPMMRCSFEETVDILLDAAVYAETDFLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAI 1474

Query: 893  EIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTP-GGPGFSP 951
            E+ L + M G   GM      TPS      TP+     + N L+SP   ++P     FSP
Sbjct: 1475 ELQLPSYMEGLDFGM------TPSRSPITGTPYHDGMMSPNYLLSPNLRLSPITDAQFSP 1528

Query: 952  SVAG 955
             V G
Sbjct: 1529 YVGG 1532



 Score =  150 bits (380), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 777  SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 836

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 837  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 878



 Score =  133 bits (334), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 93/156 (59%), Gaps = 37/156 (23%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTD 1586
            L  VT  T ++YDPDP +T+I ED +FV  YYEMPD +  P +ISPWLLRIEL+R+ M D
Sbjct: 1162 LRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEVAPEKISPWLLRIELNREMMVD 1221

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+EKIN  F DDL CIFNDDNAEKL
Sbjct: 1222 KKLS----------------------------MADIAEKINLEFDDDLTCIFNDDNAEKL 1253

Query: 1647 VLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIE 1680
            +LRIRIMN +  K  +QDE       EDD+FL+ IE
Sbjct: 1254 ILRIRIMNDEAPKGELQDE-----SAEDDVFLKKIE 1284



 Score =  120 bits (300), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 71/98 (72%), Gaps = 1/98 (1%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1367 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1426

Query: 576  DVLMDAAAHAEADPMRGYIQRRLIKAMESVMVHYDCTV 613
            D+L+DAA +AE D +RG  +  ++  +  +    DC +
Sbjct: 1427 DILLDAAVYAETDFLRGVTENIMLGQLAPIGTG-DCAL 1463



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 90/171 (52%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 853 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFD 912

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             ++++  +E      +N   +            L + + D  + ++ R +F+ +V    
Sbjct: 913 RVFKYEIDDEN-----WNPSYM------------LPEHVEDLKTIREFRNVFDAEV---- 951

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                         +KL  DR  L  EI ++G+++  +P NL  +I+  Q+
Sbjct: 952 --------------QKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQK 988



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K
Sbjct: 514  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 556



 Score = 45.1 bits (105), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 42/53 (79%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+ I+LG++PK+ARPDWM++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 227 EDCILLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 279


>gi|62911691|gb|AAY21476.1| RNA polymerase II [Bembix dentilabris]
          Length = 233

 Score =  444 bits (1143), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/278 (78%), Positives = 228/278 (82%), Gaps = 46/278 (16%)

Query: 119 RTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHE 178
           RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHE
Sbjct: 2   RTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHE 61

Query: 179 VCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNM 238
           VCGRFYGNIQTV+NNWLLLEG                                       
Sbjct: 62  VCGRFYGNIQTVINNWLLLEG--------------------------------------- 82

Query: 239 DLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTF 298
                  HSIGIGDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTF
Sbjct: 83  -------HSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTF 135

Query: 299 ENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKR 358
           ENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKR
Sbjct: 136 ENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKR 195

Query: 359 IPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 396
           IPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 196 IPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 233



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/54 (98%), Positives = 54/54 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 1062
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 180  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 233


>gi|188532151|gb|ACD63087.1| RNA polymerase II largest subunit [Nicotiana tabacum]
          Length = 1010

 Score =  444 bits (1143), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/480 (50%), Positives = 301/480 (62%), Gaps = 71/480 (14%)

Query: 76  MNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQW 135
           MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ R  + H +D + GP   
Sbjct: 479 MNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAWH-NDSEKGP--- 534

Query: 136 ISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWL 195
           I+PGDT+V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +VN WL
Sbjct: 535 ITPGDTQVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 594

Query: 196 LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIA 255
           L    SIGIGDTIAD  T  +I   I  AK  V E+I+ A    LE  PG          
Sbjct: 595 LQNAFSIGIGDTIADASTMEKINETISNAKSKVKELIKAAQEKQLEAEPGR--------- 645

Query: 256 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG 315
                                                T+ ++FEN+VN++LN ARD  G 
Sbjct: 646 -------------------------------------TMMESFENRVNQVLNKARDDAGS 668

Query: 316 SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD 375
           SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDD
Sbjct: 669 SAEKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDD 728

Query: 376 YGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVH 435
           YGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV 
Sbjct: 729 YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 788

Query: 436 YDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRF--DPSNERPT-- 491
           YD TVRNS+G +IQ  YGEDG+    +E Q++D++      F+D Y +  D  N  P+  
Sbjct: 789 YDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKAKKSTFDDLYAYEIDDPNWNPSYM 848

Query: 492 -------LRNVSSLRRVVNSKPLLIGCWKLTSVEKEMNTVLQFYG-----LYVNYRHLAL 539
                  L+ +  +R V +++       KL +  K++ T +   G     L VN + L L
Sbjct: 849 LPEAIEDLKTIREIRSVFDAE-----VQKLQADRKQLGTEIAVTGDNSWPLPVNIQRLVL 903



 Score =  153 bits (386), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 696  SQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 755

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 756  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 797



 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 42/174 (24%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++      F+
Sbjct: 772 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKAKKSTFD 831

Query: 652 DKYRF---DPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVL 708
           D Y +   DP+        +N   +            L + + D  + +++R +F+ +V 
Sbjct: 832 DLYAYEIDDPN--------WNPSYM------------LPEAIEDLKTIREIRSVFDAEV- 870

Query: 709 RELMGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                            +KL  DR+ L  EI  +G+++  LP N+  ++   Q+
Sbjct: 871 -----------------QKLQADRKQLGTEIAVTGDNSWPLPVNIQRLVLNAQK 907



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 51/73 (69%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS +A +NATL F  L+RS L +K V + YRLS EAF+W++GEIE+RF Q+   
Sbjct: 938  VPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFDWVIGEIESRFLQSLVA 997

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 998  PGEMIGCVAAQSI 1010



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 29/137 (21%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            V  + + P+ I++PQ NRPVMGIVQDTL   RK+TKRD F++K                 
Sbjct: 433  VLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDV--------------- 477

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKIN-----AGFG 1603
                  F+N+     DFD    +P +L+    R   T K++    I ++IN     A   
Sbjct: 478  ------FMNILMWWEDFDGKVPAPAILK---PRPLWTGKQVFNLIIPKQINLLRYSAWHN 528

Query: 1604 DDLNTPLSPTDKKLTME 1620
            D    P++P D ++ +E
Sbjct: 529  DSEKGPITPGDTQVRIE 545



 Score = 41.2 bits (95), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 41/53 (77%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+ ++LG++P++ARPDWM++  LP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 146 EDCLLLGLNPEYARPDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 198


>gi|188532159|gb|ACD63091.1| RNA polymerase II largest subunit [Saruma henryi]
          Length = 1009

 Score =  444 bits (1142), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/419 (54%), Positives = 283/419 (67%), Gaps = 52/419 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P +LKP+PLWTGKQVF+LIIP  +N+ RT + H + E      
Sbjct: 477 FMNILMWWEDFDGKIPAPAVLKPRPLWTGKQVFNLIIPKQINLLRTSAWHAESETG---- 532

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT+V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 533 FITPGDTQVRIERGELLAGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 592

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL                                    Q A           SIGIGDTI
Sbjct: 593 LL------------------------------------QNAF----------SIGIGDTI 606

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD  T  +I   I KAK +V E+I+ AH   LE  PG T+ ++FEN+VN++LN ARD  G
Sbjct: 607 ADAATMEKINDTITKAKNEVKELIKAAHEKQLEAEPGRTMMESFENRVNQVLNKARDDAG 666

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF +D
Sbjct: 667 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFINRTLPHFTQD 726

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 727 DNGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 786

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNERPT 491
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+   +Y FD +N  P+
Sbjct: 787 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDKVFRYEFDDANWNPS 845



 Score =  147 bits (371), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 80/102 (78%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF +DD GPESRGFVENSYL GLTP EFFFHAM
Sbjct: 695  SQMTACVGQQNVEGKRIPYGFINRTLPHFTQDDNGPESRGFVENSYLRGLTPQEFFFHAM 754

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 755  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 796



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 90/173 (52%), Gaps = 40/173 (23%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 771 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFD 830

Query: 652 D--KYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLR 709
              +Y FD +N       +N   +            L + + D  + ++ R +F+ +V  
Sbjct: 831 KVFRYEFDDAN-------WNPSYM------------LPEHVEDLKTIREFRSVFDAEV-- 869

Query: 710 ELMGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                           +KL  DR  L  EI ++G+++  +P NL  +I+  Q+
Sbjct: 870 ----------------QKLEADRYQLGTEITTTGDNSWPMPVNLKRLIWNAQK 906



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 51/73 (69%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V GED +S +A +NATL F  L+RST  +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 937  VPGEDLMSMEAQKNATLFFNILLRSTFSSKRVLKEYRLTREAFEWVIGEIESRFLQSLVA 996

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 997  PGEMIGCVAAQSI 1009



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 432  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 485



 Score = 45.1 bits (105), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 41/53 (77%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+ I+LG+ PK+ARPDWM++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 145 EDCILLGLSPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 197


>gi|356605944|gb|AET25003.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 19
            KK-2011]
          Length = 610

 Score =  444 bits (1142), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/417 (55%), Positives = 290/417 (69%), Gaps = 42/417 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+G D++SKQA  NATLL   L+RSTLCTK +    +L++EAF+WL+GEIE RFQQA   
Sbjct: 213  VSGNDEISKQAQYNATLLMNILLRSTLCTKKLCTTAKLNTEAFDWLLGEIETRFQQAIAQ 272

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  +  Q+                 V  K +  G  R + + +  K    P    F
Sbjct: 273  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVF 332

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            +  +             A    E   D   K   T      L +VT NTAIYYDPDP+NT
Sbjct: 333  LTGA-------------AAKDPEKAKDVLCKLEHTT-----LKKVTCNTAIYYDPDPKNT 374

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            VI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKKLTME I+++I+ GFG+D++
Sbjct: 375  VITEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHNGFGNDVH 434

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV R+RI   +D     +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI
Sbjct: 435  TIYTDDNAEKLVFRLRIA-GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAI 493

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYM+ P TD KKRIIIT  G FK++ADW+LETDGT+L++VLSER +DP+RT SNDICE
Sbjct: 494  SKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPIRTTSNDICE 553

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1346
            IF+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 554  IFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 610



 Score =  186 bits (473), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 90/125 (72%), Positives = 105/125 (84%)

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           IKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 1   IKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 60

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE  +R D ++ +  
Sbjct: 61  VMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFL 120

Query: 492 LRNVS 496
            +N S
Sbjct: 121 RKNYS 125



 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/152 (55%), Positives = 104/152 (68%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKK
Sbjct: 356  LKKVTCNTAIYYDPDPKNTVITEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKK 415

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+ GFG+D++T                            I+ DDNAEKLV 
Sbjct: 416  LTMEMIADRIHNGFGNDVHT----------------------------IYTDDNAEKLVF 447

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   +D     +E+ VDKMEDD+FLRCIE
Sbjct: 448  RLRIA-GEDKGADTQEEQVDKMEDDVFLRCIE 478



 Score =  131 bits (329), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 100/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 48  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 107

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++ + LR+ ++EDV+RE+  S D IS +E                        
Sbjct: 108 RDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVE------------------------ 143

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 144 -----------SEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQK 182



 Score =  106 bits (264), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/73 (68%), Positives = 58/73 (79%)

Query: 1038 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTAN 1097
            IKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET  +   L +   +
Sbjct: 1    IKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 60

Query: 1098 TAIYYDPDPQNTV 1110
              + YD   +N++
Sbjct: 61   VMVNYDGTVRNSL 73



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/60 (71%), Positives = 51/60 (85%), Gaps = 3/60 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 551 ICEIFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 610



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/45 (80%), Positives = 41/45 (91%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 560
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 566 AIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 610


>gi|356605934|gb|AET24998.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 15
            KK-2011]
          Length = 614

 Score =  444 bits (1142), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/417 (55%), Positives = 290/417 (69%), Gaps = 42/417 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+G D++SKQA  NATLL   L+RSTLCTK +    +L++EAF+WL+GEIE+RFQ A   
Sbjct: 217  VSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTTSKLNTEAFDWLLGEIESRFQSAIAQ 276

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  +  Q+                 V  K +  G  R + + +  K    P     
Sbjct: 277  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTLKTPSL--- 333

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
                Y+ G         A    E   D   K   T      L +VT NTAIYYDPDP+NT
Sbjct: 334  --TVYMTG--------AAAKDPEKAKDVLCKLEHTT-----LKKVTCNTAIYYDPDPKNT 378

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            VI ED+E+V+++YEMPD D +R SPWLLRIELDRK+M DKKLTME I+++I+ GFG+D++
Sbjct: 379  VIAEDEEWVSIFYEMPDHDISRTSPWLLRIELDRKKMVDKKLTMEMIADRIHGGFGNDVH 438

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV R+RI   D     ++E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI
Sbjct: 439  TIYTDDNAEKLVFRLRIAGEDKGP-DNQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAI 497

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYM  PQ+D KKRI+IT+ G F AIADW+LETDGT+L++VLSER +DPVRT SNDICE
Sbjct: 498  SKVYMSQPQSDDKKRIVITKEGGFDAIADWILETDGTALLRVLSERQIDPVRTTSNDICE 557

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1346
            IF+VLGIEAVRKS+E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 558  IFEVLGIEAVRKSIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 614



 Score =  193 bits (490), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/127 (72%), Positives = 107/127 (84%)

Query: 370 HFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 429
           HFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM
Sbjct: 3   HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 62

Query: 430 ESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           ESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE  +R D ++ +
Sbjct: 63  ESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNLPTMKPNNAVFERDFRMDLTDNK 122

Query: 490 PTLRNVS 496
              +N S
Sbjct: 123 FIKKNYS 129



 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/152 (54%), Positives = 104/152 (68%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D +R SPWLLRIELDRK+M DKK
Sbjct: 360  LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDISRTSPWLLRIELDRKKMVDKK 419

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+ GFG+D++T                            I+ DDNAEKLV 
Sbjct: 420  LTMEMIADRIHGGFGNDVHT----------------------------IYTDDNAEKLVF 451

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   D     ++E+ VDKMEDD+FLRCIE
Sbjct: 452  RLRIAGEDKGP-DNQEEQVDKMEDDVFLRCIE 482



 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 100/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 52  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNLPTMKPNNAVFE 111

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++ + +++ +++DV+RE+  S D IS +E                        
Sbjct: 112 RDFRMDLTDNKFIKKNYSDDVVREIQESSDGISLVE------------------------ 147

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 148 -----------SEWSQLEEDRRLLRKIFPKGDAKIVLPCNLQRLIWNAQK 186



 Score =  112 bits (279), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 60/75 (80%)

Query: 1036 HFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVT 1095
            HFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET  +   L +  
Sbjct: 3    HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 62

Query: 1096 ANTAIYYDPDPQNTV 1110
             +  + YD   +N++
Sbjct: 63   ESVMVNYDGTVRNSL 77



 Score = 94.0 bits (232), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 44/60 (73%), Positives = 51/60 (85%), Gaps = 3/60 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRKS+E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 555 ICEIFEVLGIEAVRKSIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 614



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 560
           S+E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 570 SIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 614


>gi|334187204|ref|NP_195305.2| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
 gi|322510106|sp|P18616.3|RPB1_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
           Short=RNA polymerase II subunit B1; AltName:
           Full=DNA-directed RNA polymerase III largest subunit
 gi|332661173|gb|AEE86573.1| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
          Length = 1839

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/445 (51%), Positives = 288/445 (64%), Gaps = 61/445 (13%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++  MN LM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ R  + H D E   
Sbjct: 557 KDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAWHADTETG- 615

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
              +I+PGDT+V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +V
Sbjct: 616 ---FITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLV 672

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL  G +                                              IGIG
Sbjct: 673 NYWLLQNGFT----------------------------------------------IGIG 686

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD  T  +I   I  AK  V ++I++    +L+P PG T+R TFEN+VN++LN ARD
Sbjct: 687 DTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFENRVNQVLNKARD 746

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G SA+KSL E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF
Sbjct: 747 DAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHF 806

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME 
Sbjct: 807 TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 866

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNER 489
           +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+   KY  D  N  
Sbjct: 867 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDENWN 926

Query: 490 PT---------LRNVSSLRRVVNSK 505
           PT         L+ +  LR V +++
Sbjct: 927 PTYLSDEHLEDLKGIRELRDVFDAE 951



 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 248/514 (48%), Positives = 320/514 (62%), Gaps = 59/514 (11%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS +A +NATL F  L+RSTL +K V E Y+LS EAFEW++GEIE+RF Q+   
Sbjct: 1020 VPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVA 1079

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              ++I CV  Q+                 V  K +  G  R R + +  K    P     
Sbjct: 1080 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP----- 1134

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
               S    LTP      A   +EG      KT +       L  VT  T ++YDPDP +T
Sbjct: 1135 ---SLSVYLTP-----EASKSKEG-----AKTVQCALEYTTLRSVTQATEVWYDPDPMST 1181

Query: 1110 VIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
            +I ED EFV  YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  I+EKIN  F DD
Sbjct: 1182 IIEEDFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDD 1241

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQG 1225
            L CIFNDDNA+KL+LRIRIMN +  K  +QDE       EDD+FL+ IE+NML++M L+G
Sbjct: 1242 LTCIFNDDNAQKLILRIRIMNDEGPKGELQDE-----SAEDDVFLKKIESNMLTEMALRG 1296

Query: 1226 IEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSN 1285
            I  I KV++        ++    E G FK   +W+L+T+G +L+ V+   DVDP RT SN
Sbjct: 1297 IPDINKVFIK-----QVRKSRFDEEGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSN 1351

Query: 1286 DICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1345
             + EI +VLGIEAVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGIN
Sbjct: 1352 HLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1411

Query: 1346 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 1405
            R DTG LMRCSFEETVD+L+DAAA+AE D +RGV+ENI++GQL  +GTG  +L L+ E  
Sbjct: 1412 RNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEML 1471

Query: 1406 KDGIEIPLATGMMGGPAGMFFGSAATPSSIPGPP 1439
            K+ IE+ L + M     G+ FG     S + G P
Sbjct: 1472 KNAIELQLPSYM----DGLEFGMTPARSPVSGTP 1501



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 125/187 (66%), Gaps = 10/187 (5%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            L +II VL   +VR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR
Sbjct: 1353 LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1412

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
             DTG LMRCSFEETVD+L+DAAA+AE D +RGV+ENI++GQL  +GTG  +L L+ E  K
Sbjct: 1413 NDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLK 1472

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTP-GGPG 948
            + IE+ L + M G   GM      TP+      TP+ +   + N L+SP   ++P     
Sbjct: 1473 NAIELQLPSYMDGLEFGM------TPARSPVSGTPYHEGMMSPNYLLSPNMRLSPMSDAQ 1526

Query: 949  FSPSVAG 955
            FSP V G
Sbjct: 1527 FSPYVGG 1533



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 778  SQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 837

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 838  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 879



 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 93/156 (59%), Gaps = 37/156 (23%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTD 1586
            L  VT  T ++YDPDP +T+I ED EFV  YYEMPD D  P +ISPWLLRIEL+R+ M D
Sbjct: 1163 LRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVD 1222

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+EKIN  F DDL CIFNDDNA+KL
Sbjct: 1223 KKLS----------------------------MADIAEKINLEFDDDLTCIFNDDNAQKL 1254

Query: 1647 VLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIE 1680
            +LRIRIMN +  K  +QDE       EDD+FL+ IE
Sbjct: 1255 ILRIRIMNDEGPKGELQDE-----SAEDDVFLKKIE 1285



 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 67/86 (77%)

Query: 520  EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 579
            E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETVD+L+
Sbjct: 1372 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILL 1431

Query: 580  DAAAHAEADPMRGYIQRRLIKAMESV 605
            DAAA+AE D +RG  +  ++  +  +
Sbjct: 1432 DAAAYAETDCLRGVTENIMLGQLAPI 1457



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 854 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFD 913

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             ++++  +E       +++ L +L G                  ++LR +F        
Sbjct: 914 RTFKYEIDDENWNPTYLSDEHLEDLKG-----------------IRELRDVF-------- 948

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                     + E+ KL  DR  L  EI ++G+S   LP N+   I+  Q+
Sbjct: 949 ----------DAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQK 989



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ NRPVMGIVQDTL   RK+TKRD F++K V  NT ++++
Sbjct: 515  VLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWE 568



 Score = 42.0 bits (97), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 38/49 (77%)

Query: 34  ILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           +LG +PKFARPDWM++ VLP+PP  VRP+V+M  ++R+++ + + L  +
Sbjct: 232 LLGFNPKFARPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMI 280


>gi|358030892|dbj|BAL15355.1| RNA polymerase II largest subunit, partial [Olpidium bornovanus]
          Length = 838

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/425 (53%), Positives = 285/425 (67%), Gaps = 51/425 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           +MN+ M++P WDG +P P ILKPKPLWTGKQ+ S++IP  VN+   HS HPD+E +    
Sbjct: 296 VMNMAMWVPDWDGVLPIPAILKPKPLWTGKQMLSMLIPKGVNVQTFHSEHPDNELTD--- 352

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            ISPGDTKV++E+G LL GI+CKK++G S+G L+H+ + E G EVC  ++   Q +VN W
Sbjct: 353 -ISPGDTKVIIENGELLAGIVCKKTVGASAGGLVHVIWQEKGPEVCKTWFNGTQRLVNYW 411

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           L                                                 G SIGIGDT+
Sbjct: 412 LF----------------------------------------------QYGFSIGIGDTV 425

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD +T   +  AI++AKE V E+I +AH   ++P PG T+R+TFE QVN  LN ARD+ G
Sbjct: 426 ADTKTMQNVTSAIQQAKERVAELILEAHQDRMKPMPGMTIRETFEAQVNSALNTARDQAG 485

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA++SL   NN+K MVVAGSKGS INISQ+ ACVGQQNVEGKRIPFGF+ RTLP F KD
Sbjct: 486 KSAQQSLNPENNVKQMVVAGSKGSYINISQMTACVGQQNVEGKRIPFGFKYRTLPCFTKD 545

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D+ PESRGFVENSYL GLTP EF+FHAMGGREGLIDTAVKTAETGYIQRRLIKA+E VMV
Sbjct: 546 DHTPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKALEDVMV 605

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLRN 494
            YD TVRNS+ ++IQ  YGEDGL G  VE Q+++ + +S  +FE  Y  +  + + T R+
Sbjct: 606 KYDGTVRNSMNEVIQFSYGEDGLDGAFVERQQLEGLRMSSARFEQHYCVNLKDRKKTFRS 665

Query: 495 VSSLR 499
             SLR
Sbjct: 666 -GSLR 669



 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 80/102 (78%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF+ RTLP F KDD+ PESRGFVENSYL GLTP EF+FHAM
Sbjct: 514  SQMTACVGQQNVEGKRIPFGFKYRTLPCFTKDDHTPESRGFVENSYLRGLTPQEFYFHAM 573

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 574  GGREGLIDTAVKTAETGYIQRRLIKALEDVMVKYDGTVRNSM 615



 Score = 93.6 bits (231), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 84/167 (50%), Gaps = 34/167 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKA+E VMV YD TVRNS+ ++IQ  YGEDGL G  VE Q+++ + +S  +FE
Sbjct: 590 GYIQRRLIKALEDVMVKYDGTVRNSMNEVIQFSYGEDGLDGAFVERQQLEGLRMSSARFE 649

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             Y     N +  ++ F    LR                               ++L +L
Sbjct: 650 QHYCV---NLKDRKKTFRSGSLR------------------------------PELLEQL 676

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVIF 757
             S      L+ E+E+L  D+  L + IF SGE    LPCNL  +I+
Sbjct: 677 SKSDQAQKVLDAEFEQLKXDKRLLSDFIFVSGEDKWPLPCNLRRLIW 723



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G D++S+QA  NATLLFQ L+R T  ++ V E+YRLS++AFEW++GE+E RF  + V
Sbjct: 758  VRGSDKISEQAQANATLLFQMLLRQTFASRRVIEDYRLSAQAFEWILGEVEARFNTSLV 816



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 21/105 (20%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPD----- 1543
            +  I + P+QI+ P +++P MGIVQDTL  +RKMTKRDVFLDK        + PD     
Sbjct: 251  INEICMVPKQIVAPASSKPCMGIVQDTLCGIRKMTKRDVFLDKAFVMNMAMWVPDWDGVL 310

Query: 1544 -------PQ---------NTVIPEDQEFVNVYYEMPDFDPTRISP 1572
                   P+         + +IP+       + E PD + T ISP
Sbjct: 311  PIPAILKPKPLWTGKQMLSMLIPKGVNVQTFHSEHPDNELTDISP 355


>gi|50346881|gb|AAT75147.1| RNA polymerase 2 [Caenorhabditis plicata]
          Length = 636

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/424 (54%), Positives = 295/424 (69%), Gaps = 42/424 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+G D +S+QA  NATLL   L+RSTLC+K +    +L++EAF+WL+GE+E+RF QA   
Sbjct: 232  VSGNDDISRQAQYNATLLMNILLRSTLCSKKLCTTSKLNTEAFDWLLGEVESRFNQAIAQ 291

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  +  Q+                 V  K +  G  R + + +  K    P    F
Sbjct: 292  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTCF 351

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            +  S             A    E   D   K   T      L +VT+NTAIYYDPDP+NT
Sbjct: 352  LVGS-------------AAKDVEKAKDVLCKLEHTT-----LKKVTSNTAIYYDPDPKNT 393

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            VI ED+E+V+++YEMPD D T+ SPWLLRIELDRK+MTDKKLTME I E+I+AGFG+D+ 
Sbjct: 394  VIGEDEEWVSIFYEMPDADLTKASPWLLRIELDRKKMTDKKLTMEMIDERIHAGFGNDVK 453

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNA+KLV R+RI   DD   + +E+ VDKMEDD+FLRCIE+NML+D+TLQGI AI
Sbjct: 454  TIYTDDNADKLVFRLRIA-GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGIPAI 512

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVY++ PQ+D KKR IIT  G FK+IA+W+LETDGT+L +VLSE  +DPVRT SNDICE
Sbjct: 513  AKVYLNKPQSDDKKRTIITPEGGFKSIAEWILETDGTALQRVLSEPQIDPVRTTSNDICE 572

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 1349
            IF+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ 
Sbjct: 573  IFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEV 632

Query: 1350 GALM 1353
            GALM
Sbjct: 633  GALM 636



 Score =  226 bits (576), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 106/136 (77%), Positives = 121/136 (88%)

Query: 353 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 412
           NVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 1   NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 60

Query: 413 VKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVAL 472
           VKTAETGYIQRRLIKAMESVMV+YD TVRNS+GQ++QLRYG+DGL G  VE+Q + T+  
Sbjct: 61  VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLGQMVQLRYGQDGLDGMWVENQNMPTMKP 120

Query: 473 SHKKFEDKYRFDPSNE 488
           ++  FE  +R D +++
Sbjct: 121 TNAVFERDFRTDLTDD 136



 Score =  167 bits (422), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 85/152 (55%), Positives = 105/152 (69%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT+NTAIYYDPDP+NTVI ED+E+V+++YEMPD D T+ SPWLLRIELDRK+MTDKK
Sbjct: 375  LKKVTSNTAIYYDPDPKNTVIGEDEEWVSIFYEMPDADLTKASPWLLRIELDRKKMTDKK 434

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L                            TME I E+I+AGFG+D+  I+ DDNA+KLV 
Sbjct: 435  L----------------------------TMEMIDERIHAGFGNDVKTIYTDDNADKLVF 466

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   DD   + +E+ VDKMEDD+FLRCIE
Sbjct: 467  RLRIA-GDDKMAEGQEEQVDKMEDDVFLRCIE 497



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/189 (47%), Positives = 112/189 (59%), Gaps = 25/189 (13%)

Query: 1019 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 1078
            NVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 1    NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 60

Query: 1079 VKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLR 1138
            VKTAET  +   L +   +  + YD   +N++     + V + Y     D      W   
Sbjct: 61   VKTAETGYIQRRLIKAMESVMVNYDGTVRNSL----GQMVQLRYGQDGLD----GMW--- 109

Query: 1139 IELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEE 1198
              ++ + M   K T        NA F  D      DDN     +R    +S   ++Q+ E
Sbjct: 110  --VENQNMPTMKPT--------NAVFERDFRTDLTDDN----FMRNSYTDSVIREIQESE 155

Query: 1199 DAVDKMEDD 1207
            DA++K+E +
Sbjct: 156  DAIEKVESE 164



 Score =  127 bits (318), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 98/170 (57%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+GQ++QLRYG+DGL G  VE+Q + T+  ++  FE
Sbjct: 67  GYIQRRLIKAMESVMVNYDGTVRNSLGQMVQLRYGQDGLDGMWVENQNMPTMKPTNAVFE 126

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D +++  +R  + + V+RE+  S D I ++E                        
Sbjct: 127 RDFRTDLTDDNFMRNSYTDSVIREIQESEDAIEKVE------------------------ 162

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 163 -----------SEWAQLEEDRRLLRKIFPKGDAKIVLPCNLQRLIWNAQK 201



 Score =  102 bits (255), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 57/67 (85%), Gaps = 3/67 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 570 ICEIFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 629

Query: 830 QDTGALM 836
           Q+ GALM
Sbjct: 630 QEVGALM 636



 Score = 93.6 bits (231), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 41/52 (78%), Positives = 47/52 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 567
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALM
Sbjct: 585 AIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALM 636


>gi|302141712|emb|CBI18915.3| unnamed protein product [Vitis vinifera]
          Length = 1565

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/418 (54%), Positives = 280/418 (66%), Gaps = 52/418 (12%)

Query: 76  MNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQW 135
           MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ RT + H + E      +
Sbjct: 608 MNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLLRTSAWHSESETG----F 663

Query: 136 ISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWL 195
           I+PGDT+V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +VN WL
Sbjct: 664 ITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 723

Query: 196 LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIA 255
           L  G SIGIGDTIAD  T  +I   I KAK +V E+I+ A    LE  PG          
Sbjct: 724 LQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQLEAEPGR--------- 774

Query: 256 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG 315
                                                T+ ++FEN+VN++LN ARD  G 
Sbjct: 775 -------------------------------------TMMESFENRVNQVLNKARDDAGS 797

Query: 316 SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD 375
           SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KDD
Sbjct: 798 SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDD 857

Query: 376 YGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVH 435
           YGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV 
Sbjct: 858 YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 917

Query: 436 YDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNERPT 491
           YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+   KY  D  N  P+
Sbjct: 918 YDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPS 975



 Score =  320 bits (819), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 201/508 (39%), Positives = 283/508 (55%), Gaps = 68/508 (13%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 825  SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 884

Query: 1069 GGREGLIDTAVKTAETV--------------------------NVLVFLFQVTANTAIYY 1102
            GGREGLIDTAVKT+ET                           +V+ FL+      A++ 
Sbjct: 885  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 944

Query: 1103 DPDPQNTVIPEDQEFVNVY-YEMPD--FDPTRISPWLLRIELDRKRMTDKKLTMEAISEK 1159
            +    +++  +  EF  V+ YE+ D  ++P+ + P   R+  + ++   ++L +E+   +
Sbjct: 945  ETQKLDSLKMKKGEFDRVFKYEIDDENWNPSYMLP-EHRLIWNAQKTFKERLKIESRFLQ 1003

Query: 1160 INAGFGDDLNCI---------------------FNDDNAEKLVLRIRIMNSDDSKMQD-- 1196
                 G+ + C+                      +  N    V R+R + +   K++   
Sbjct: 1004 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPS 1063

Query: 1197 -----EEDAVDKMEDDMFLRC-IEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITES 1250
                 + D     E    ++C +E   L  +T Q  E I    + +    +++ ++  ES
Sbjct: 1064 LSVYLKPDVSKTKERAKNVQCALEYTTLRSVT-QATEKISPWLLRIEL--NREMMLQDES 1120

Query: 1251 GE----FKAI--ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVE 1304
             E     K I   +W+L+T+G +L+ V+   DVD  RT SN + E+ +VLGIEAVR+S+ 
Sbjct: 1121 AEDDVFLKKIEKVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLL 1180

Query: 1305 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 1364
             E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L
Sbjct: 1181 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1240

Query: 1365 MDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGM 1424
            +DAA +AE D +RGV+ENI++GQL  +GTG   L L+ +  +  IE+ L + M G   GM
Sbjct: 1241 LDAAVYAETDFLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGM 1300

Query: 1425 FFGSAATPSSIPGPPAWYPIHIAISLLS 1452
                +      P  P + P     S  S
Sbjct: 1301 TPSRSPITGYSPSSPGYSPTSPGYSPTS 1328



 Score =  171 bits (434), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 92/183 (50%), Positives = 126/183 (68%), Gaps = 11/183 (6%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DT
Sbjct: 1166 VIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1225

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G +MRCSFEETVD+L+DAA +AE D +RGV+ENI++GQL  +GTG   L L+ +  +  I
Sbjct: 1226 GPMMRCSFEETVDILLDAAVYAETDFLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAI 1285

Query: 893  EIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
            E+ L + M G   GM      TPS  SP +T ++ S+P Y+   SPG   +P  PG+SP+
Sbjct: 1286 ELQLPSYMEGLDFGM------TPSR-SP-ITGYSPSSPGYSP-TSPG--YSPTSPGYSPT 1334

Query: 953  VAG 955
              G
Sbjct: 1335 SPG 1337



 Score =  119 bits (299), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 71/98 (72%), Gaps = 1/98 (1%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1178 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1237

Query: 576  DVLMDAAAHAEADPMRGYIQRRLIKAMESVMVHYDCTV 613
            D+L+DAA +AE D +RG  +  ++  +  +    DC +
Sbjct: 1238 DILLDAAVYAETDFLRGVTENIMLGQLAPIGTG-DCAL 1274



 Score = 77.0 bits (188), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 51/70 (72%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 901 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFD 960

Query: 652 DKYRFDPSNE 661
             ++++  +E
Sbjct: 961 RVFKYEIDDE 970



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 562  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 615



 Score = 44.3 bits (103), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 44/59 (74%), Gaps = 3/59 (5%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQ---MMNILMFLPIW 85
           E+ I+LG++PK+ARPDWM++ VLP+PP  VRP+V+M  S+R++     ++N  + L +W
Sbjct: 257 EDCILLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEASLSVLVNDRLKLSMW 315


>gi|16494|emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
          Length = 1860

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/445 (51%), Positives = 288/445 (64%), Gaps = 61/445 (13%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++  MN LM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ R  + H D E   
Sbjct: 578 KDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAWHADTETG- 636

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
              +I+PGDT+V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +V
Sbjct: 637 ---FITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLV 693

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL  G +                                              IGIG
Sbjct: 694 NYWLLQNGFT----------------------------------------------IGIG 707

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD  T  +I   I  AK  V ++I++    +L+P PG T+R TFEN+VN++LN ARD
Sbjct: 708 DTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFENRVNQVLNKARD 767

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G SA+KSL E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF
Sbjct: 768 DAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHF 827

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME 
Sbjct: 828 TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 887

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNER 489
           +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+   KY  D  N  
Sbjct: 888 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDENWN 947

Query: 490 PT---------LRNVSSLRRVVNSK 505
           PT         L+ +  LR V +++
Sbjct: 948 PTYLSDEHLEDLKGIRELRDVFDAE 972



 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 248/514 (48%), Positives = 320/514 (62%), Gaps = 59/514 (11%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS +A +NATL F  L+RSTL +K V E Y+LS EAFEW++GEIE+RF Q+   
Sbjct: 1041 VPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVA 1100

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              ++I CV  Q+                 V  K +  G  R R + +  K    P     
Sbjct: 1101 PGEMIGCVPAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP----- 1155

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
               S    LTP      A   +EG      KT +       L  VT  T ++YDPDP +T
Sbjct: 1156 ---SLSVYLTP-----EASKSKEG-----AKTVQCALEYTTLRSVTQATEVWYDPDPMST 1202

Query: 1110 VIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
            +I ED EFV  YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  I+EKIN  F DD
Sbjct: 1203 IIEEDFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDD 1262

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQG 1225
            L CIFNDDNA+KL+LRIRIMN +  K  +QDE       EDD+FL+ IE+NML++M L+G
Sbjct: 1263 LTCIFNDDNAQKLILRIRIMNDEGPKGELQDE-----SAEDDVFLKKIESNMLTEMALRG 1317

Query: 1226 IEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSN 1285
            I  I KV++        ++    E G FK   +W+L+T+G +L+ V+   DVDP RT SN
Sbjct: 1318 IPDINKVFIK-----QVRKSRFDEEGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSN 1372

Query: 1286 DICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1345
             + EI +VLGIEAVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGIN
Sbjct: 1373 HLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1432

Query: 1346 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 1405
            R DTG LMRCSFEETVD+L+DAAA+AE D +RGV+ENI++GQL  +GTG  +L L+ E  
Sbjct: 1433 RNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEML 1492

Query: 1406 KDGIEIPLATGMMGGPAGMFFGSAATPSSIPGPP 1439
            K+ IE+ L + M     G+ FG     S + G P
Sbjct: 1493 KNAIELQLPSYM----DGLEFGMTPARSPVSGTP 1522



 Score =  176 bits (445), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 125/187 (66%), Gaps = 10/187 (5%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            L +II VL   +VR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR
Sbjct: 1374 LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1433

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
             DTG LMRCSFEETVD+L+DAAA+AE D +RGV+ENI++GQL  +GTG  +L L+ E  K
Sbjct: 1434 NDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLK 1493

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTP-GGPG 948
            + IE+ L + M G   GM      TP+      TP+ +   + N L+SP   ++P     
Sbjct: 1494 NAIELQLPSYMDGLEFGM------TPARSPVSGTPYHEGMMSPNYLLSPNMRLSPMSDAQ 1547

Query: 949  FSPSVAG 955
            FSP V G
Sbjct: 1548 FSPYVGG 1554



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 799  SQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 858

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 859  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 900



 Score =  134 bits (337), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 93/156 (59%), Gaps = 37/156 (23%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTD 1586
            L  VT  T ++YDPDP +T+I ED EFV  YYEMPD D  P +ISPWLLRIEL+R+ M D
Sbjct: 1184 LRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVD 1243

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+EKIN  F DDL CIFNDDNA+KL
Sbjct: 1244 KKLS----------------------------MADIAEKINLEFDDDLTCIFNDDNAQKL 1275

Query: 1647 VLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIE 1680
            +LRIRIMN +  K  +QDE       EDD+FL+ IE
Sbjct: 1276 ILRIRIMNDEGPKGELQDE-----SAEDDVFLKKIE 1306



 Score =  122 bits (307), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 67/86 (77%)

Query: 520  EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 579
            E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETVD+L+
Sbjct: 1393 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILL 1452

Query: 580  DAAAHAEADPMRGYIQRRLIKAMESV 605
            DAAA+AE D +RG  +  ++  +  +
Sbjct: 1453 DAAAYAETDCLRGVTENIMLGQLAPI 1478



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 36/171 (21%)

Query: 592  GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
            GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 875  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFD 934

Query: 652  DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
              ++++  +E       +++ L +L G                  ++LR +F        
Sbjct: 935  RTFKYEIDDENWNPTYLSDEHLEDLKG-----------------IRELRDVF-------- 969

Query: 712  MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                      + E+ KL  DR  L  EI ++G+S   LP N+   I+  Q+
Sbjct: 970  ----------DAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQK 1010



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ NRPVMGIVQDTL   RK+TKRD F++K V  NT ++++
Sbjct: 536  VLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWE 589



 Score = 42.0 bits (97), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 38/49 (77%)

Query: 34  ILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           +LG +PKFARPDWM++ VLP+PP  VRP+V+M  ++R+++ + + L  +
Sbjct: 225 LLGFNPKFARPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMI 273


>gi|188532155|gb|ACD63089.1| RNA polymerase II largest subunit [Persea americana]
          Length = 1009

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/414 (54%), Positives = 279/414 (67%), Gaps = 50/414 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+  T + H + E      
Sbjct: 477 FMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIXTSAWHSESETG---- 532

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT+V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 533 FITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 592

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G SIGIGDTIAD  T  +I   I KAK +V ++I+ A    LE  PG         
Sbjct: 593 LLQNGFSIGIGDTIADAATMEKINETILKAKSEVKDLIKAAQEKSLEAEPGR-------- 644

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 645 --------------------------------------TMMESFENRVNQVLNKARDDAG 666

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KD
Sbjct: 667 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKD 726

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPE RGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 727 DYGPEXRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 786

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  ++F + YR++  NE
Sbjct: 787 KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKREFLNVYRYEIDNE 840



 Score =  150 bits (380), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 100/160 (62%), Gaps = 12/160 (7%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPE RGFVENSYL GLTP EFFFHAM
Sbjct: 695  SQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDYGPEXRGFVENSYLRGLTPQEFFFHAM 754

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++     + +   Y     D
Sbjct: 755  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL----GDVIQFLYGEDGMD 810

Query: 1129 PTRISPWLLRIELDRKRMTDKKL----TMEAISEKINAGF 1164
                S W+   +LD  +M  ++       E  +E  N G+
Sbjct: 811  ----SVWIESQKLDSLKMKKREFLNVYRYEIDNENWNPGY 846



 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  ++F 
Sbjct: 771 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKREFL 830

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + YR++  NE      +N   +            L + + D  + ++ R +F+ +V    
Sbjct: 831 NVYRYEIDNEN-----WNPGYM------------LPEHVEDLKTIREFRNVFDAEV---- 869

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                         +KL  DR  L  EI ++G+++  +P NL  +I+  Q+
Sbjct: 870 --------------QKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQK 906



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 51/73 (69%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS +A +NATL F  L+RST  +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 937  VPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVA 996

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 997  PGEMIGCVAAQSI 1009



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 432  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 485



 Score = 44.3 bits (103), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 42/53 (79%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+ ++LG++PK+ARPDWM++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 145 EDCMLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 197


>gi|50346876|gb|AAT75145.1| RNA polymerase 2 [Rhabditella axei]
          Length = 621

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/410 (56%), Positives = 290/410 (70%), Gaps = 43/410 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V+GED++S+QA  NATLL   L+RSTLC+K +A  Y+L++E+FEWL+GEIE RF+QA  I
Sbjct: 232  VSGEDRISQQAQYNATLLMNILIRSTLCSKKMASTYKLNAESFEWLIGEIETRFKQA--I 289

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
            A  G+       +      ++L         P ++  +   + AG++           +E
Sbjct: 290  AQPGE-------MVGALAAQSLGE-------PATQMTLNTFHFAGVSAKNVTLGVPRLKE 335

Query: 1073 GLIDTAVKTAETVNVLVFLF-----------------------QVTANTAIYYDPDPQNT 1109
              I    K  +T ++ V+L                        +VTANTAIYYDPD +NT
Sbjct: 336  --IINVSKQLKTPSLTVYLIGAAAKDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDIKNT 393

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
             I ED+E+V+++YEMPDFDP+R SPWLLR+ELDRKRMTDKKLTME I++KI+ GFGDDLN
Sbjct: 394  CIEEDEEWVSIFYEMPDFDPSRSSPWLLRLELDRKRMTDKKLTMEQIADKIHQGFGDDLN 453

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNA+KLV R+RI +SDD     EE+ +DKMEDD+FLRCIE+NMLSD+TLQG+  I
Sbjct: 454  VIYTDDNADKLVFRLRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGVTQI 511

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYMH P TD KKRIIIT  G FKAI +WLLETDGT+L+KVLSE+ +DP RT SNDICE
Sbjct: 512  SKVYMHKPTTDDKKRIIITPEGAFKAIREWLLETDGTALLKVLSEQHIDPARTTSNDICE 571

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1339
            IF+VLGIEAVRKS+E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 572  IFEVLGIEAVRKSIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAI 621



 Score =  229 bits (583), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/141 (77%), Positives = 125/141 (88%), Gaps = 1/141 (0%)

Query: 353 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 412
           NVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 1   NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTA 60

Query: 413 VKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVAL 472
           VKTAETGYIQRRLIKAMESVMV+YD TVRNS+ Q+IQLRYGEDGL G  VE+Q + T+  
Sbjct: 61  VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQNMPTMKP 120

Query: 473 SHKKFEDKYRFDPSNERPTLR 493
           ++  FE +++ D ++E+ TLR
Sbjct: 121 TNAMFEKEFKLDLTDEK-TLR 140



 Score =  176 bits (447), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 89/152 (58%), Positives = 107/152 (70%), Gaps = 30/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPD +NT I ED+E+V+++YEMPDFDP+R SPWLLR+ELDRKRMTDKK
Sbjct: 375  LRKVTANTAIYYDPDIKNTCIEEDEEWVSIFYEMPDFDPSRSSPWLLRLELDRKRMTDKK 434

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L                            TME I++KI+ GFGDDLN I+ DDNA+KLV 
Sbjct: 435  L----------------------------TMEQIADKIHQGFGDDLNVIYTDDNADKLVF 466

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI +SDD     EE+ +DKMEDD+FLRCIE
Sbjct: 467  RLRITSSDDKGA--EEEQIDKMEDDVFLRCIE 496



 Score =  145 bits (367), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 76/92 (82%)

Query: 1019 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 1078
            NVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 1    NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTA 60

Query: 1079 VKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            VKTAET  +   L +   +  + YD   +N++
Sbjct: 61   VKTAETGYIQRRLIKAMESVMVNYDGTVRNSL 92



 Score =  138 bits (347), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/170 (42%), Positives = 103/170 (60%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q+IQLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 67  GYIQRRLIKAMESVMVNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQNMPTMKPTNAMFE 126

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++ D ++E+ LR+ + E+V+R+L GS + + E+E                        
Sbjct: 127 KEFKLDLTDEKTLRKFYTEEVVRDLQGSTEAMKEVE------------------------ 162

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF +G++ +VLPCNL  +I+  Q+
Sbjct: 163 -----------SEWHQLEEDRRLLRKIFPTGDAKIVLPCNLQRLIWNAQK 201



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 44/53 (83%), Gaps = 3/53 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 822
           +C+I  VL   +VRKS+E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 569 ICEIFEVLGIEAVRKSIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAI 621



 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/38 (81%), Positives = 34/38 (89%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 553
           S+E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 584 SIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAI 621


>gi|78190641|gb|ABB29642.1| DNA-directed RNA polymerase II largest subunit [Suberites fuscus]
          Length = 363

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/327 (65%), Positives = 247/327 (75%), Gaps = 46/327 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +E +MN+LM+LP WDGKMPQP ILKPKPLWTGKQ+F+L IPGN+N+ RTHSTHPD+ED G
Sbjct: 83  KEDVMNLLMWLPAWDGKMPQPAILKPKPLWTGKQMFTLTIPGNINVVRTHSTHPDEEDDG 142

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY++ISPGDTKV+VEHG L+ GIL K +LG  SGSL+H+  +E   EV   FYGNIQ +V
Sbjct: 143 PYRYISPGDTKVLVEHGELISGILSKDTLGPKSGSLMHVVAMEFSAEVARDFYGNIQKLV 202

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NN+LL+EGHSIGIGDTIAD  TY +IQ  I++AK DVIEVI+KAHN +LEPTPG      
Sbjct: 203 NNYLLIEGHSIGIGDTIADSFTYNDIQRTIRQAKSDVIEVIKKAHNNELEPTPG------ 256

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILN+ARD
Sbjct: 257 ----------------------------------------NTLRQTFENQVNRILNEARD 276

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SA++SL+++NN K MV AGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHF
Sbjct: 277 KTGSSAQRSLSDFNNFKIMVTAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHF 336

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFF 398
           IKDDYGPES+GFVENSYLAGLTP+EF+
Sbjct: 337 IKDDYGPESKGFVENSYLAGLTPNEFY 363



 Score =  119 bits (297), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/66 (78%), Positives = 58/66 (87%)

Query: 999  VGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 1058
             G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGL
Sbjct: 298  AGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGL 357

Query: 1059 TPSEFF 1064
            TP+EF+
Sbjct: 358  TPNEFY 363



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            V+ + +  R I+TPQ+NRPVMGIVQD+LTA  KMTKRDVFL K
Sbjct: 41   VQEMIMVNRNILTPQSNRPVMGIVQDSLTAATKMTKRDVFLGK 83


>gi|77176709|gb|ABA64469.1| DNA-dependent RNA polymerase II largest subunit [Glaucocystis
           nostochinearum]
          Length = 1852

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/451 (51%), Positives = 295/451 (65%), Gaps = 59/451 (13%)

Query: 37  MDPKFARPDWMLV--TVLPVPPLSVRPAVVMHGSARNQEQMMNILMFLPIWDGKMPQPCI 94
           + P+  RP   +V  T++    +++R   +       ++ +MNILM L  +DG++P P I
Sbjct: 518 ISPQSNRPVMGIVQDTLMASQKMTIRDTFI------EKDVVMNILMHLDSFDGRLPIPAI 571

Query: 95  LKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGI 154
           LKP+PLWTGKQ+F++ +P NVN+ R  S HPD+E S     ISPGDTKV++E G LL GI
Sbjct: 572 LKPRPLWTGKQLFTMFLP-NVNLIRFCSQHPDNEVSD----ISPGDTKVIIEQGELLAGI 626

Query: 155 LCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTY 214
           +CK++LGTSSGSL+H+ + E GH++   F+   Q V+NNWL+                  
Sbjct: 627 VCKRTLGTSSGSLIHVIWNEHGHDIARVFFSMTQKVINNWLI------------------ 668

Query: 215 LEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDV 274
                                         G SIGIGDTIAD  T   I   I  AK  V
Sbjct: 669 ----------------------------NVGFSIGIGDTIADEATMETINQHIGTAKTRV 700

Query: 275 IEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAG 334
            ++I       LE  PG TL ++FEN+VN+ LN ARD  G SA+KSL   NN+KAMV +G
Sbjct: 701 QQLILDCQQNRLECQPGRTLLESFENRVNKELNTARDNAGASAQKSLKPSNNVKAMVTSG 760

Query: 335 SKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 394
           SKGS INISQ+IACVGQQNVEGKRIPFGFR RTLPHF K+DYGPESRGFVENSYL GLTP
Sbjct: 761 SKGSFINISQMIACVGQQNVEGKRIPFGFRDRTLPHFHKNDYGPESRGFVENSYLRGLTP 820

Query: 395 SEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGE 454
            EFFFHAMGGREGLIDTAVKT+ETGYIQRRLIKAME VMV YD T+RNS+G +IQ  YGE
Sbjct: 821 QEFFFHAMGGREGLIDTAVKTSETGYIQRRLIKAMEDVMVQYDSTLRNSIGDIIQFVYGE 880

Query: 455 DGLCGEAVEHQRIDTVALSHKKFEDKYRFDP 485
           DG+    VE+Q+++++ +  K+F   Y+F+P
Sbjct: 881 DGMDAVYVENQKLESMKMGDKEFGKVYKFEP 911



 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 219/480 (45%), Positives = 294/480 (61%), Gaps = 61/480 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            + GED LS +A  NAT+LFQ LVRS L +K V   YRL+S AFEWL+GEIE+RF QA   
Sbjct: 1010 IPGEDPLSVEAQANATMLFQILVRSCLASKRVLTEYRLTSHAFEWLLGEIESRFLQAIAN 1069

Query: 1010 --QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
              +++  +  Q++ G+                    P ++  +   + AG++        
Sbjct: 1070 PGEMVGAIAAQSI-GE--------------------PATQMTLNTFHYAGVSSKNVTLGV 1108

Query: 1068 MGGREGLIDTAVKTAETVNVLVFLFQ-----------------------VTANTAIYYDP 1104
               +E  I    K  +T +++V+L +                       VTA T IYYDP
Sbjct: 1109 PRLKE--IINVAKKVKTPSLVVYLKEYCRRDSEKAKAVQCQLEFTTLRHVTAATEIYYDP 1166

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDF---DPTRISPWLLRIELDRKRMTDKKLTMEAISEKIN 1161
            D QNTVI ED+EFV  YYE+PD    D  R+S WLLRIEL+R+ MTDKKLTM+ I E+I 
Sbjct: 1167 DLQNTVIEEDREFVQCYYEIPDIPQSDFARMSTWLLRIELNREMMTDKKLTMKDIDERIA 1226

Query: 1162 AGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDM 1221
              FG DL+ I++DDNA KL L IRI N    +    ++     ++  FLR IE +ML++M
Sbjct: 1227 VDFGGDLHVIYSDDNAAKLSLHIRIKNQ--EEEAKNQEEEASGDEHEFLRRIEGDMLTEM 1284

Query: 1222 TLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVR 1281
             L+GI  I KV+M        K+I      ++    +W+L+T+G +L++V+S +DVD  R
Sbjct: 1285 ALRGIAQIRKVFMR-----EAKKITFDADHKYMHEKEWVLDTEGCNLLEVMSCQDVDHTR 1339

Query: 1282 TFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 1341
            T SNDI EI QVLGIEAVR++  KE+  V+ F G YVNYRHLA L DVMT +GHLM+ITR
Sbjct: 1340 TTSNDIVEIIQVLGIEAVRQAALKELRDVISFDGSYVNYRHLATLADVMTYRGHLMSITR 1399

Query: 1342 HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1401
            HGINR  TGA+MRCSFEETV++LMDAA +AE D  R V+ENI++GQL ++GTG FDL L+
Sbjct: 1400 HGINRVPTGAMMRCSFEETVEILMDAAVYAETDHCRSVTENIMLGQLCQLGTGSFDLFLN 1459



 Score =  166 bits (420), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/204 (45%), Positives = 129/204 (63%), Gaps = 18/204 (8%)

Query: 750  CNLMEVIFI--LQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLA 807
            CNL+EV+    +   +   N+ +  + +++ + +VR++  KE+  V+ F G YVNYRHLA
Sbjct: 1324 CNLLEVMSCQDVDHTRTTSNDIVEII-QVLGIEAVRQAALKELRDVISFDGSYVNYRHLA 1382

Query: 808  LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 867
             L DVMT +GHLM+ITRHGINR  TGA+MRCSFEETV++LMDAA +AE D  R V+ENI+
Sbjct: 1383 TLADVMTYRGHLMSITRHGINRVPTGAMMRCSFEETVEILMDAAVYAETDHCRSVTENIM 1442

Query: 868  MGQLPRMGTGCFDLLLDAEKCKDGIEIPL--ATGMMGGPAGMFFGSAATPSSMSPQMTPW 925
            +GQL ++GTG FDL L+ +        PL  +TG + G   +      +P+  SPQMTP 
Sbjct: 1443 LGQLCQLGTGSFDLFLNDK----AFSTPLNRSTGGVDGQPNLV--GEGSPTIGSPQMTP- 1495

Query: 926  AQSTPAYNALMSPGAAMTPGGPGF 949
                  Y+  M+P    +PGG  F
Sbjct: 1496 ------YDTHMTPALQQSPGGTPF 1513



 Score =  156 bits (394), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/102 (70%), Positives = 83/102 (81%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+IACVGQQNVEGKRIPFGFR RTLPHF K+DYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 769  SQMIACVGQQNVEGKRIPFGFRDRTLPHFHKNDYGPESRGFVENSYLRGLTPQEFFFHAM 828

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 829  GGREGLIDTAVKTSETGYIQRRLIKAMEDVMVQYDSTLRNSI 870



 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/174 (41%), Positives = 93/174 (53%), Gaps = 42/174 (24%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDF---DPTRISPWLLRIELDRKRMT 1585
            L  VTA T IYYDPD QNTVI ED+EFV  YYE+PD    D  R+S WLLRIEL+R+ MT
Sbjct: 1153 LRHVTAATEIYYDPDLQNTVIEEDREFVQCYYEIPDIPQSDFARMSTWLLRIELNREMMT 1212

Query: 1586 DKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1645
            DKKL                            TM+ I E+I   FG DL+ I++DDNA K
Sbjct: 1213 DKKL----------------------------TMKDIDERIAVDFGGDLHVIYSDDNAAK 1244

Query: 1646 LVLRIRIMNSDDSKMQ-------DEEDAVDKMEDDMF----LRCIEETDRSFVK 1688
            L L IRI N ++           DE + + ++E DM     LR I +  + F++
Sbjct: 1245 LSLHIRIKNQEEEAKNQEEEASGDEHEFLRRIEGDMLTEMALRGIAQIRKVFMR 1298



 Score =  110 bits (276), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/108 (54%), Positives = 70/108 (64%), Gaps = 18/108 (16%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            KE+  V+ F G YVNYRHLA L DVMT +GHLM+ITRHGINR  TGA+MRCSFEETV++L
Sbjct: 1363 KELRDVISFDGSYVNYRHLATLADVMTYRGHLMSITRHGINRVPTGAMMRCSFEETVEIL 1422

Query: 579  MDAAAHAEADPMRGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYG 626
            MDAA +AE D  R           E++M          +GQL QL  G
Sbjct: 1423 MDAAVYAETDHCRS--------VTENIM----------LGQLCQLGTG 1452



 Score = 98.2 bits (243), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAME VMV YD T+RNS+G +IQ  YGEDG+    VE+Q+++++ +  K+F 
Sbjct: 845 GYIQRRLIKAMEDVMVQYDSTLRNSIGDIIQFVYGEDGMDAVYVENQKLESMKMGDKEFG 904

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             Y+F+P                   G G                       + D+++++
Sbjct: 905 KVYKFEPDARN--------------FGDG---------------------FMDADIVQKI 929

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
             S D    LE E+++L  DR ALRE   + E+   LP NL  +I+  Q+
Sbjct: 930 RDSADDRILLEAEFKQLMNDRTALRESIPTDENTWPLPVNLKRLIWNAQK 979



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 41/54 (75%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V+ I + PRQII+PQ+NRPVMGIVQDTL A +KMT RD F++K V  N  ++ D
Sbjct: 507  VQEICLVPRQIISPQSNRPVMGIVQDTLMASQKMTIRDTFIEKDVVMNILMHLD 560


>gi|4883421|emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
           [Arabidopsis thaliana]
 gi|7270532|emb|CAB81489.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
           [Arabidopsis thaliana]
          Length = 1840

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/445 (51%), Positives = 288/445 (64%), Gaps = 61/445 (13%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++  MN LM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ R  + H D E   
Sbjct: 558 KDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAWHADTETG- 616

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
              +I+PGDT+V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +V
Sbjct: 617 ---FITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLV 673

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL  G +                                              IGIG
Sbjct: 674 NYWLLQNGFT----------------------------------------------IGIG 687

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD  T  +I   I  AK  V ++I++    +L+P PG T+R TFEN+VN++LN ARD
Sbjct: 688 DTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFENRVNQVLNKARD 747

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G SA+KSL E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF
Sbjct: 748 DAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHF 807

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME 
Sbjct: 808 TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 867

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNER 489
           +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+   KY  D  N  
Sbjct: 868 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDENWN 927

Query: 490 PT---------LRNVSSLRRVVNSK 505
           PT         L+ +  LR V +++
Sbjct: 928 PTYLSDEHLEDLKGIRELRDVFDAE 952



 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 248/514 (48%), Positives = 320/514 (62%), Gaps = 59/514 (11%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS +A +NATL F  L+RSTL +K V E Y+LS EAFEW++GEIE+RF Q+   
Sbjct: 1021 VPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVA 1080

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              ++I CV  Q+                 V  K +  G  R R + +  K    P     
Sbjct: 1081 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP----- 1135

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
               S    LTP      A   +EG      KT +       L  VT  T ++YDPDP +T
Sbjct: 1136 ---SLSVYLTP-----EASKSKEG-----AKTVQCALEYTTLRSVTQATEVWYDPDPMST 1182

Query: 1110 VIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
            +I ED EFV  YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  I+EKIN  F DD
Sbjct: 1183 IIEEDFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDD 1242

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQG 1225
            L CIFNDDNA+KL+LRIRIMN +  K  +QDE       EDD+FL+ IE+NML++M L+G
Sbjct: 1243 LTCIFNDDNAQKLILRIRIMNDEGPKGELQDE-----SAEDDVFLKKIESNMLTEMALRG 1297

Query: 1226 IEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSN 1285
            I  I KV++        ++    E G FK   +W+L+T+G +L+ V+   DVDP RT SN
Sbjct: 1298 IPDINKVFIK-----QVRKSRFDEEGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSN 1352

Query: 1286 DICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1345
             + EI +VLGIEAVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGIN
Sbjct: 1353 HLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1412

Query: 1346 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 1405
            R DTG LMRCSFEETVD+L+DAAA+AE D +RGV+ENI++GQL  +GTG  +L L+ E  
Sbjct: 1413 RNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEML 1472

Query: 1406 KDGIEIPLATGMMGGPAGMFFGSAATPSSIPGPP 1439
            K+ IE+ L + M     G+ FG     S + G P
Sbjct: 1473 KNAIELQLPSYM----DGLEFGMTPARSPVSGTP 1502



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 125/187 (66%), Gaps = 10/187 (5%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            L +II VL   +VR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR
Sbjct: 1354 LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1413

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
             DTG LMRCSFEETVD+L+DAAA+AE D +RGV+ENI++GQL  +GTG  +L L+ E  K
Sbjct: 1414 NDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLK 1473

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTP-GGPG 948
            + IE+ L + M G   GM      TP+      TP+ +   + N L+SP   ++P     
Sbjct: 1474 NAIELQLPSYMDGLEFGM------TPARSPVSGTPYHEGMMSPNYLLSPNMRLSPMSDAQ 1527

Query: 949  FSPSVAG 955
            FSP V G
Sbjct: 1528 FSPYVGG 1534



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 779  SQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 838

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 839  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 880



 Score =  134 bits (337), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 93/156 (59%), Gaps = 37/156 (23%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTD 1586
            L  VT  T ++YDPDP +T+I ED EFV  YYEMPD D  P +ISPWLLRIEL+R+ M D
Sbjct: 1164 LRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVD 1223

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+EKIN  F DDL CIFNDDNA+KL
Sbjct: 1224 KKLS----------------------------MADIAEKINLEFDDDLTCIFNDDNAQKL 1255

Query: 1647 VLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIE 1680
            +LRIRIMN +  K  +QDE       EDD+FL+ IE
Sbjct: 1256 ILRIRIMNDEGPKGELQDE-----SAEDDVFLKKIE 1286



 Score =  122 bits (307), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 67/86 (77%)

Query: 520  EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 579
            E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETVD+L+
Sbjct: 1373 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILL 1432

Query: 580  DAAAHAEADPMRGYIQRRLIKAMESV 605
            DAAA+AE D +RG  +  ++  +  +
Sbjct: 1433 DAAAYAETDCLRGVTENIMLGQLAPI 1458



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 855 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFD 914

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             ++++  +E       +++ L +L G                  ++LR +F        
Sbjct: 915 RTFKYEIDDENWNPTYLSDEHLEDLKG-----------------IRELRDVF-------- 949

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                     + E+ KL  DR  L  EI ++G+S   LP N+   I+  Q+
Sbjct: 950 ----------DAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQK 990



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ NRPVMGIVQDTL   RK+TKRD F++K V  NT ++++
Sbjct: 516  VLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWE 569



 Score = 42.0 bits (97), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 38/49 (77%)

Query: 34  ILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           +LG +PKFARPDWM++ VLP+PP  VRP+V+M  ++R+++ + + L  +
Sbjct: 233 LLGFNPKFARPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMI 281


>gi|45935327|gb|AAS79685.1| RNA polymerase II large subunit [Taxus canadensis]
          Length = 1013

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/414 (54%), Positives = 279/414 (67%), Gaps = 50/414 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ R  + H + E      
Sbjct: 481 FMNILMWWEDFDGKIPAPTILKPRPLWTGKQVFNLIIPKQINLIRQSAWHAESETG---- 536

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT V +E G +L G LCKK+LGTSSGSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 537 FITPGDTIVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 596

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL +G SIGIGDTIAD  T   I   I KAK +V ++I+ A +  LE  PG         
Sbjct: 597 LLQQGFSIGIGDTIADAATMEVINETISKAKHEVKQLIKAAQDKQLEAEPGR-------- 648

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 649 --------------------------------------TMMESFENRVNQVLNKARDDAG 670

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KD
Sbjct: 671 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFDGRTLPHFTKD 730

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 731 DKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 790

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  K+FE+ YR++   E
Sbjct: 791 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFENVYRYEIDQE 844



 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 80/102 (78%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDD GPESRGFVENSYL GLTP EFFFHAM
Sbjct: 699  SQMTACVGQQNVEGKRIPYGFDGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAM 758

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 759  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 800



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 87/171 (50%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  K+FE
Sbjct: 775 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFE 834

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + YR++   E      +N              S +  E VD               +RE 
Sbjct: 835 NVYRYEIDQEN-----WNP-------------SYMLPEHVDDLK-----------TIREF 865

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
               D       E +KL  DR  L  EI ++G+++  +P NL  +I+  Q+
Sbjct: 866 QNVFDA------ELQKLESDRRQLGTEIATTGDNSWPMPVNLKRLIWNAQK 910



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 50/73 (68%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F  L+RST  +K V + Y L+ EAFEW+VGEIE+RF Q+   
Sbjct: 941  VPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYHLTKEAFEWVVGEIESRFLQSLVA 1000

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 1001 PGEMIGCVAAQSI 1013



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 436  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 489


>gi|170652135|gb|ACB21844.1| RNA polymerase II [Melipona sp. MP85]
          Length = 234

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/280 (77%), Positives = 228/280 (81%), Gaps = 46/280 (16%)

Query: 78  ILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWIS 137
           ILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WIS
Sbjct: 1   ILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWIS 60

Query: 138 PGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLL 197
           PGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLL
Sbjct: 61  PGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLL 120

Query: 198 EGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADP 257
           EGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG            
Sbjct: 121 EGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------------ 168

Query: 258 QTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSA 317
                                             NTLRQTFENQVNRILNDARDKTGGSA
Sbjct: 169 ----------------------------------NTLRQTFENQVNRILNDARDKTGGSA 194

Query: 318 KKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGK 357
           KKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGK
Sbjct: 195 KKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGK 234


>gi|83320424|gb|ABC02839.1| RNA polymerase II largest subunit, partial [Polychytrium
           aggregatum]
          Length = 1016

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/414 (55%), Positives = 277/414 (66%), Gaps = 51/414 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           +++ +MN+LM++P WDG +P PCI+KP PLWTGKQ+ SLIIP  +NM   H  HPDDE S
Sbjct: 479 SKDMVMNLLMWVPDWDGTVPTPCIIKPIPLWTGKQMMSLIIP-RINMVGYHMAHPDDEKS 537

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
                ISPGDTKV +E G LL GILCKK++G+S   ++HI F E G E    F+ + Q +
Sbjct: 538 D----ISPGDTKVYIEDGELLTGILCKKTVGSSQNGIIHITFNEHGPEAAKGFFNSCQLI 593

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN WLL                                       HN       G SIGI
Sbjct: 594 VNYWLL---------------------------------------HN-------GFSIGI 607

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIAD QT  +I  +I+ AK +V ++I KA   +L   PG T+R +FE  VN+ LN AR
Sbjct: 608 GDTIADKQTMEKINQSIQSAKAEVNKIIAKAQRDELAVLPGMTIRLSFEALVNKELNRAR 667

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           D  G SA++SL E NN+K MV AGSKGS INISQ+  CVGQQNVEGKRIPFGF+ R+LPH
Sbjct: 668 DMAGKSAERSLKEQNNVKQMVTAGSKGSFINISQMTGCVGQQNVEGKRIPFGFKDRSLPH 727

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F KDD+ PESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KAME
Sbjct: 728 FTKDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAME 787

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            VMV YD T+R+S+G +IQ  YGEDG+ G  VE Q ++++A+S  KFE  YR D
Sbjct: 788 DVMVRYDGTIRDSLGTVIQFCYGEDGMDGAKVERQNLESLAMSDAKFEKAYRVD 841



 Score =  147 bits (372), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/95 (70%), Positives = 76/95 (80%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+  CVGQQNVEGKRIPFGF+ R+LPHF KDD+ PESRGFVENSYL GLTP EFFFHAM
Sbjct: 700  SQMTGCVGQQNVEGKRIPFGFKDRSLPHFTKDDHSPESRGFVENSYLRGLTPQEFFFHAM 759

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
            GGREGLIDTAVKTAET  +   L +   +  + YD
Sbjct: 760  GGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYD 794



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 87/170 (51%), Gaps = 34/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME VMV YD T+R+S+G +IQ  YGEDG+ G  VE Q ++++A+S  KFE
Sbjct: 776 GYIQRRLVKAMEDVMVRYDGTIRDSLGTVIQFCYGEDGMDGAKVERQNLESLAMSDAKFE 835

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             YR D                  L G               +  K    + +      L
Sbjct: 836 KAYRVD------------------LTGG-------------QYGLKP--GVLDFRTQENL 862

Query: 712 MGSGDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVIFILQ 760
           +  G   + L++E+E+L +DRE LR  IF  G S+  LP NL  +I+  Q
Sbjct: 863 LSDGLTQNRLDQEFEQLRKDRETLRWTIFKDGSSSWPLPVNLKRLIWNAQ 912



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 43/57 (75%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA 1009
            V G D LS +A +NATLLFQ LVRSTL T+ V E + L+S++F+ L+GEIE RF QA
Sbjct: 944  VRGNDPLSVEAQKNATLLFQILVRSTLATRRVLEEFHLNSKSFQHLIGEIEMRFNQA 1000



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 39/60 (65%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            ++ + + P+QI+TPQ N P MGIVQDTL A+RK T+RD FL K      + + PD   TV
Sbjct: 438  IQELCMVPKQIVTPQKNGPCMGIVQDTLCAIRKFTRRDCFLSKDMVMNLLMWVPDWDGTV 497



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 35  LGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSA 69
           +G+   +ARP+WM +TVL VPP+ VRPAV M+   
Sbjct: 158 MGLSQDWARPEWMCITVLAVPPMPVRPAVNMNNGG 192


>gi|1916666|gb|AAB51212.1| large subunit RNA polymerase II, partial [Teratorhabditis palmarum]
          Length = 631

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/424 (54%), Positives = 293/424 (69%), Gaps = 42/424 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+GED++SKQA  NATLL   L+RSTLC+K VA  ++L++EAF+WL+GEIE+RF+QA   
Sbjct: 228  VSGEDRISKQAQYNATLLMNILIRSTLCSKRVASMHKLNNEAFDWLLGEIEHRFKQAIAQ 287

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 288  PGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPR--LKEIINVSKKPKTPSL- 344

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
               YL G         A    E   +   +   T      L +VT+NTAIYYDPDP+NT+
Sbjct: 345  -TIYLTGA--------AARDAERAKEVQCRLEHTT-----LRKVTSNTAIYYDPDPRNTI 390

Query: 1111 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNC 1170
            I ED+E+V  YYEMPD  P+ +SPWLLRIELDRKRMTDK+LTMEAI+ +I  GFG DL+ 
Sbjct: 391  IQEDEEWVAFYYEMPDSLPSNVSPWLLRIELDRKRMTDKRLTMEAIASRITQGFGYDLHT 450

Query: 1171 IFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIG 1230
            I+ DDNA+ LV RIRI + +     D E+ ++KMEDDMFLR +E   L ++TLQGIE I 
Sbjct: 451  IYTDDNADSLVFRIRIRSENKG---DTEETIEKMEDDMFLRAVEQICLLELTLQGIEQIS 507

Query: 1231 KVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEI 1290
            KVYMH P TD KKR +IT  G+F++IA+WLLETDGTSL+ VLS+ +VDPVRT+SNDICEI
Sbjct: 508  KVYMHKPTTDDKKRTVITPEGDFRSIAEWLLETDGTSLLDVLSQPNVDPVRTYSNDICEI 567

Query: 1291 FQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTG 1350
            F+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ G
Sbjct: 568  FEVLGIEAVRKAIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVG 627

Query: 1351 ALMR 1354
            ALMR
Sbjct: 628  ALMR 631



 Score =  214 bits (546), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 102/139 (73%), Positives = 119/139 (85%), Gaps = 1/139 (0%)

Query: 357 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 416
           KRIPFGFR R+LPHFI+DDYGPES+GFVENSYLAGLT +EFFFHAMGGREGLIDTAVKTA
Sbjct: 1   KRIPFGFRHRSLPHFIQDDYGPESKGFVENSYLAGLTAAEFFFHAMGGREGLIDTAVKTA 60

Query: 417 ETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKK 476
           ETGYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL    VE Q + T+ L +  
Sbjct: 61  ETGYIQRRLIKAMESVMVNYDGTVRNSISQMVQLRYGEDGLDAVWVEGQTMPTMRLKNSV 120

Query: 477 FEDKYRFDPSNERPTLRNV 495
           FED ++ D ++E+ TLR +
Sbjct: 121 FEDLFKLDLTDEK-TLRKL 138



 Score =  159 bits (403), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/153 (52%), Positives = 101/153 (66%), Gaps = 31/153 (20%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT+NTAIYYDPDP+NT+I ED+E+V  YYEMPD  P+ +SPWLLRIELDRKRMTDK+
Sbjct: 371  LRKVTSNTAIYYDPDPRNTIIQEDEEWVAFYYEMPDSLPSNVSPWLLRIELDRKRMTDKR 430

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTMEAI+ +I  GFG DL+T                            I+ DDNA+ LV 
Sbjct: 431  LTMEAIASRITQGFGYDLHT----------------------------IYTDDNADSLVF 462

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEE 1681
            RIRI + +     D E+ ++KMEDDMFLR +E+
Sbjct: 463  RIRIRSENKG---DTEETIEKMEDDMFLRAVEQ 492



 Score =  137 bits (345), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 102/170 (60%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL    VE Q + T+ L +  FE
Sbjct: 63  GYIQRRLIKAMESVMVNYDGTVRNSISQMVQLRYGEDGLDAVWVEGQTMPTMRLKNSVFE 122

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           D ++ D ++E+ LR+++ E+V+R+L+GS   + E E                        
Sbjct: 123 DLFKLDLTDEKTLRKLYTEEVVRDLLGSTVALKEAE------------------------ 158

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +EW++L EDR  LR+IF  G++ VVLPCNL  +I+  Q+
Sbjct: 159 -----------EEWQQLEEDRRLLRKIFPKGDNKVVLPCNLQRLIWNAQK 197



 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 71/88 (80%)

Query: 1023 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 1082
            KRIPFGFR R+LPHFI+DDYGPES+GFVENSYLAGLT +EFFFHAMGGREGLIDTAVKTA
Sbjct: 1    KRIPFGFRHRSLPHFIQDDYGPESKGFVENSYLAGLTAAEFFFHAMGGREGLIDTAVKTA 60

Query: 1083 ETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            ET  +   L +   +  + YD   +N++
Sbjct: 61   ETGYIQRRLIKAMESVMVNYDGTVRNSI 88



 Score =  104 bits (260), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 58/68 (85%), Gaps = 3/68 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 564 ICEIFEVLGIEAVRKAIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 623

Query: 830 QDTGALMR 837
           Q+ GALMR
Sbjct: 624 QEVGALMR 631



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/53 (79%), Positives = 48/53 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 568
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMR
Sbjct: 579 AIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMR 631


>gi|170652155|gb|ACB21854.1| RNA polymerase II [Melipona sp. MP98]
          Length = 233

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/279 (77%), Positives = 227/279 (81%), Gaps = 46/279 (16%)

Query: 80  MFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPG 139
           MFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPG
Sbjct: 1   MFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPG 60

Query: 140 DTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEG 199
           DTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEG
Sbjct: 61  DTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG 120

Query: 200 HSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQT 259
           HSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG              
Sbjct: 121 HSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG-------------- 166

Query: 260 YLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKK 319
                                           NTLRQTFENQVNRILNDARDKTGGSAKK
Sbjct: 167 --------------------------------NTLRQTFENQVNRILNDARDKTGGSAKK 194

Query: 320 SLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKR 358
           SLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKR
Sbjct: 195 SLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKR 233


>gi|50346858|gb|AAT75140.1| RNA polymerase 2 [Caenorhabditis remanei]
          Length = 611

 Score =  442 bits (1136), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/416 (55%), Positives = 294/416 (70%), Gaps = 42/416 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V+G D++SKQA  NATLL   L+RSTLCTK +  + +L++EAF+WL+GE+E+RFQQA  I
Sbjct: 215  VSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEVESRFQQA--I 272

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
            A  G+       +      ++L         P ++  +   + AG++           +E
Sbjct: 273  AQPGE-------MVGALAAQSLGE-------PATQMTLNTFHYAGVSAKNVTLGVPRLKE 318

Query: 1073 GLIDTAVKTAETVNVLVFLF-----------------------QVTANTAIYYDPDPQNT 1109
              I    K  +T ++ VFL                        +VT NTAIYYDPDP+NT
Sbjct: 319  --IINVSKQLKTPSLTVFLTGAAAKDAEKAKDVLCKLEHTTLKKVTLNTAIYYDPDPKNT 376

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            VI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKKLTME I+++I+ GFG+D++
Sbjct: 377  VIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVH 436

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV R+RI   +D     +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI
Sbjct: 437  TIYTDDNAEKLVFRLRIA-GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAI 495

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYM+ P TD KKRIIIT  G FKA+ADW+LETDGT+L++VLSER +DPVRT SNDICE
Sbjct: 496  SKVYMNQPNTDDKKRIIITPEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICE 555

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1345
            IF+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGIN
Sbjct: 556  IFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGIN 611



 Score =  191 bits (484), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 91/127 (71%), Positives = 106/127 (83%)

Query: 370 HFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 429
           HFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM
Sbjct: 1   HFIKDDYGPESKGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 60

Query: 430 ESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           ESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE Q + T+  ++  FE  +R D ++ +
Sbjct: 61  ESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVEDQNMPTMKPNNAVFERDFRMDLTDNK 120

Query: 490 PTLRNVS 496
              +N S
Sbjct: 121 FLRKNYS 127



 Score =  166 bits (419), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/152 (55%), Positives = 104/152 (68%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKK
Sbjct: 358  LKKVTLNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKK 417

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+ GFG+D++T                            I+ DDNAEKLV 
Sbjct: 418  LTMEMIADRIHGGFGNDVHT----------------------------IYTDDNAEKLVF 449

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   +D     +E+ VDKMEDD+FLRCIE
Sbjct: 450  RLRIA-GEDKGADTQEEQVDKMEDDVFLRCIE 480



 Score =  130 bits (327), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 99/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE Q + T+  ++  FE
Sbjct: 50  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVEDQNMPTMKPNNAVFE 109

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++ + LR+ ++EDV+RE+  S D IS +E                        
Sbjct: 110 RDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVE------------------------ 145

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 146 -----------SEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQK 184



 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 60/75 (80%)

Query: 1036 HFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVT 1095
            HFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAET  +   L +  
Sbjct: 1    HFIKDDYGPESKGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 60

Query: 1096 ANTAIYYDPDPQNTV 1110
             +  + YD   +N++
Sbjct: 61   ESVMVNYDGTVRNSL 75



 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 50/59 (84%), Gaps = 3/59 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGIN
Sbjct: 553 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGIN 611



 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 40/44 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 559
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGIN
Sbjct: 568 AIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGIN 611


>gi|188532139|gb|ACD63081.1| RNA polymerase II largest subunit [Asparagus officinalis]
          Length = 1009

 Score =  442 bits (1136), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/442 (52%), Positives = 290/442 (65%), Gaps = 63/442 (14%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N++R  + H + E      
Sbjct: 479 FMNILMWWEDFDGKVPTPAILKPRPLWTGKQVFNLIIPKQINLSRASAWHSESETG---- 534

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT+V +E G LL G LCKK+LGTS+GSL+H+ +  +G +   +F G+ Q +VN W
Sbjct: 535 FITPGDTQVRIEKGELLTGTLCKKTLGTSTGSLIHVIW--VGPDAARKFLGHTQWLVNYW 592

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL    SIGIGDTIAD  T  +I   I KAK DV ++I+ A +  LEP PG         
Sbjct: 593 LLQNAFSIGIGDTIADAATMEKINETISKAKNDVKDLIKLAQDKQLEPEPGR-------- 644

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 645 --------------------------------------TMMESFENRVNQVLNKARDDAG 666

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KD
Sbjct: 667 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIGRTLPHFTKD 726

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFF+AMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 727 DYGPESRGFVENSYLRGLTPQEFFFYAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 786

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRF-------DPSN 487
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  K+F + YR+       DPS 
Sbjct: 787 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFNNVYRYEIDDNQWDPSY 846

Query: 488 ERPT----LRNVSSLRRVVNSK 505
             P     L+ +   R V +++
Sbjct: 847 MLPEHVEDLKTIPEFRNVFDAE 868



 Score =  150 bits (378), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 80/155 (51%), Positives = 100/155 (64%), Gaps = 29/155 (18%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFF+AM
Sbjct: 695  SQMTACVGQQNVEGKRIPYGFIGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFYAM 754

Query: 1069 GGREGLIDTAVKTAET--------------------------VNVLVFLFQVTANTAIYY 1102
            GGREGLIDTAVKT+ET                           +V+ FL+      A++ 
Sbjct: 755  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 814

Query: 1103 DPDPQNTVIPEDQEFVNVY-YEMPD--FDPTRISP 1134
            +    +++  + +EF NVY YE+ D  +DP+ + P
Sbjct: 815  ESQKLDSLKMKKKEFNNVYRYEIDDNQWDPSYMLP 849



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 50/66 (75%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  K+F 
Sbjct: 771 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFN 830

Query: 652 DKYRFD 657
           + YR++
Sbjct: 831 NVYRYE 836



 Score = 77.4 bits (189), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS +A +NATLLF  L+RST  +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 937  VPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVA 996

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 997  PGEMIGCVAAQSI 1009



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 434  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 487



 Score = 45.4 bits (106), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 42/53 (79%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+ ++LG++PK+ARPDWM++ VLP+PP  VRP+V+M  SAR+++ + + L  +
Sbjct: 147 EDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSARSEDDLTHQLAMI 199


>gi|16505|emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana]
          Length = 1841

 Score =  442 bits (1136), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/445 (51%), Positives = 288/445 (64%), Gaps = 61/445 (13%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++  MN LM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ R  + H D E   
Sbjct: 552 KDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAWHADTETG- 610

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
              +I+PGDT+V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +V
Sbjct: 611 ---FITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLV 667

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL  G +                                              IGIG
Sbjct: 668 NYWLLQNGFT----------------------------------------------IGIG 681

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD  T  +I   I  AK  V ++I++    +L+P PG T+R TFEN+V+++LN ARD
Sbjct: 682 DTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFENRVDQVLNKARD 741

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G SA+KSL E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF
Sbjct: 742 DAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHF 801

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME 
Sbjct: 802 TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 861

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNER 489
           +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+   KY  D  N  
Sbjct: 862 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDENWN 921

Query: 490 PT---------LRNVSSLRRVVNSK 505
           PT         L+ +  LR V +++
Sbjct: 922 PTYLSDEHLEDLKGIRELRDVFDAE 946



 Score =  431 bits (1107), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 247/514 (48%), Positives = 319/514 (62%), Gaps = 59/514 (11%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS +A +NATL F  L+RSTL +K V E Y+LS E FEW++GEIE+RF Q+   
Sbjct: 1015 VPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSRERFEWVIGEIESRFLQSLVA 1074

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              ++I CV  Q+                 V  K +  G  R R + +  K    P     
Sbjct: 1075 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP----- 1129

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
               S    LTP      A   +EG      KT +       L  VT  T ++YDPDP +T
Sbjct: 1130 ---SLSVYLTP-----EASKSKEG-----AKTVQCALEYTTLRSVTQATEVWYDPDPMST 1176

Query: 1110 VIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
            +I ED EFV  YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  I+EKIN  F DD
Sbjct: 1177 IIEEDFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDD 1236

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQG 1225
            L CIFNDDNA+KL+LRIRIMN +  K  +QDE       EDD+FL+ IE+NML++M L+G
Sbjct: 1237 LTCIFNDDNAQKLILRIRIMNDEGPKGELQDE-----SAEDDVFLKKIESNMLTEMALRG 1291

Query: 1226 IEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSN 1285
            I  I KV++        ++    E G FK   +W+L+T+G +L+ V+   DVDP RT SN
Sbjct: 1292 IPDINKVFIK-----QVRKSRFDEEGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSN 1346

Query: 1286 DICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1345
             + EI +VLGIEAVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGIN
Sbjct: 1347 HLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1406

Query: 1346 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 1405
            R DTG LMRCSFEETVD+L+DAAA+AE D +RGV+ENI++GQL  +GTG  +L L+ E  
Sbjct: 1407 RNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEML 1466

Query: 1406 KDGIEIPLATGMMGGPAGMFFGSAATPSSIPGPP 1439
            K+ IE+ L + M     G+ FG     S + G P
Sbjct: 1467 KNAIELQLPSYM----DGLEFGMTPARSPVSGTP 1496



 Score =  176 bits (445), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 125/187 (66%), Gaps = 10/187 (5%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            L +II VL   +VR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR
Sbjct: 1348 LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1407

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
             DTG LMRCSFEETVD+L+DAAA+AE D +RGV+ENI++GQL  +GTG  +L L+ E  K
Sbjct: 1408 NDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLK 1467

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTP-GGPG 948
            + IE+ L + M G   GM      TP+      TP+ +   + N L+SP   ++P     
Sbjct: 1468 NAIELQLPSYMDGLEFGM------TPARSPVSGTPYHEGMMSPNYLLSPNMRLSPMSDAQ 1521

Query: 949  FSPSVAG 955
            FSP V G
Sbjct: 1522 FSPYVGG 1528



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 773  SQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 832

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 833  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 874



 Score =  134 bits (337), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 93/156 (59%), Gaps = 37/156 (23%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTD 1586
            L  VT  T ++YDPDP +T+I ED EFV  YYEMPD D  P +ISPWLLRIEL+R+ M D
Sbjct: 1158 LRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVD 1217

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+EKIN  F DDL CIFNDDNA+KL
Sbjct: 1218 KKLS----------------------------MADIAEKINLEFDDDLTCIFNDDNAQKL 1249

Query: 1647 VLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIE 1680
            +LRIRIMN +  K  +QDE       EDD+FL+ IE
Sbjct: 1250 ILRIRIMNDEGPKGELQDE-----SAEDDVFLKKIE 1280



 Score =  122 bits (307), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 67/86 (77%)

Query: 520  EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 579
            E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETVD+L+
Sbjct: 1367 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILL 1426

Query: 580  DAAAHAEADPMRGYIQRRLIKAMESV 605
            DAAA+AE D +RG  +  ++  +  +
Sbjct: 1427 DAAAYAETDCLRGVTENIMLGQLAPI 1452



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 849 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFD 908

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             ++++  +E       +++ L +L G                  ++LR +F        
Sbjct: 909 RTFKYEIDDENWNPTYLSDEHLEDLKG-----------------IRELRDVF-------- 943

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                     + E+ KL  DR  L  EI ++G+S   LP N+   I+  Q+
Sbjct: 944 ----------DAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQK 984



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ NRPVMGIVQDTL   RK+TKRD F++K V  NT ++++
Sbjct: 510  VLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWE 563



 Score = 42.0 bits (97), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 38/49 (77%)

Query: 34  ILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           +LG +PKFARPDWM++ VLP+PP  VRP+V+M  ++R+++ + + L  +
Sbjct: 233 LLGFNPKFARPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMI 281


>gi|45935331|gb|AAS79687.1| RNA polymerase II large subunit [Ginkgo biloba]
          Length = 1013

 Score =  441 bits (1135), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/414 (54%), Positives = 279/414 (67%), Gaps = 50/414 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ R  + H + E      
Sbjct: 481 FMNILMWWEDFDGKIPSPTILKPRPLWTGKQVFNLIIPRQINLIRYSAWHSESETG---- 536

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT V +E G +L G LCKK+LGTSSGSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 537 FITPGDTCVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 596

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL +G SIGIGDTIAD  T   I   I KAK +V ++I+ A    LE  PG         
Sbjct: 597 LLQQGFSIGIGDTIADAATMETINETISKAKNEVKQLIKAAQEKALEAEPGR-------- 648

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 649 --------------------------------------TMMESFENRVNQVLNKARDDAG 670

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA++SL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KD
Sbjct: 671 SSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFDGRTLPHFTKD 730

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 731 DNGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 790

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  K+FE+ Y+++  NE
Sbjct: 791 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRKEFENVYKYEIDNE 844



 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 99/160 (61%), Gaps = 12/160 (7%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDD GPESRGFVENSYL GLTP EFFFHAM
Sbjct: 699  SQMTACVGQQNVEGKRIPYGFDGRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAM 758

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++     + +   Y     D
Sbjct: 759  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL----GDVIQFLYGEDGMD 814

Query: 1129 PTRISPWLLRIELDRKRMTDKKL----TMEAISEKINAGF 1164
                  W+   +LD  +M  K+       E  +E  N G+
Sbjct: 815  AV----WIESQKLDSLKMKRKEFENVYKYEIDNENWNPGY 850



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 90/171 (52%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  K+FE
Sbjct: 775 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRKEFE 834

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + Y+++  NE      +N   +            L   + D  + ++ R +F+ +V    
Sbjct: 835 NVYKYEIDNEN-----WNPGYM------------LADHVEDLKTIREFRNVFDAEV---- 873

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                         +KL  DR  L  EI  SG+++  +P NL  +I+  Q+
Sbjct: 874 --------------QKLEADRRQLGTEIAPSGDNSWPMPVNLKRLIWNAQK 910



 Score = 74.7 bits (182), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 51/73 (69%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F  L+RST  +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 941  VPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVA 1000

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 1001 PGEMIGCVAAQSI 1013



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 436  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWE 489



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 41/53 (77%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           EE  +LG++PK+ARPDWM++ VLP+PP  VRP+V+M  ++R+++ + + L  +
Sbjct: 149 EECQLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTTSRSEDDLTHQLAMI 201


>gi|45935325|gb|AAS79684.1| RNA polymerase II large subunit [Thuja occidentalis]
          Length = 1013

 Score =  441 bits (1134), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/414 (54%), Positives = 279/414 (67%), Gaps = 50/414 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ R  + H + E      
Sbjct: 481 FMNILMWWEDFDGKIPAPTILKPRPLWTGKQVFNLIIPKQINLIRYSAWHAESETG---- 536

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT V +E G ++ G LCKK+LGTSSGSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 537 FITPGDTCVRIEKGEVISGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 596

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL +G SIGIGDTIAD  T   I   I KAK +V ++I+ A +  LE  PG         
Sbjct: 597 LLQQGFSIGIGDTIADAATMEVINETISKAKNEVKQLIKAAQDKQLEAEPGR-------- 648

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 649 --------------------------------------TMMESFENRVNQVLNKARDDAG 670

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KD
Sbjct: 671 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFDGRTLPHFTKD 730

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 731 DKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 790

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  K+FE+ YR++   E
Sbjct: 791 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRKEFENVYRYEIDQE 844



 Score =  148 bits (374), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 80/102 (78%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDD GPESRGFVENSYL GLTP EFFFHAM
Sbjct: 699  SQMTACVGQQNVEGKRIPYGFDGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAM 758

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 759  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 800



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 86/171 (50%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  K+FE
Sbjct: 775 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRKEFE 834

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + YR++   E      +N              S +  E VD               +RE 
Sbjct: 835 NVYRYEIDQEN-----WNP-------------SYMLPEHVDDLK-----------TIREF 865

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
               D       E +KL  DR  L  EI  SG+++  +P NL  +I+  Q+
Sbjct: 866 QNVFDA------ELQKLESDRRQLGTEIAPSGDNSWPMPVNLKRLIWNAQK 910



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 50/73 (68%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F  L+RST  +K V + Y L+ EAFEW+VGEIE+RF Q+   
Sbjct: 941  VPGDDLISIEAQKNATLFFNILLRSTFASKRVLKEYHLTKEAFEWVVGEIESRFLQSIVA 1000

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 1001 PGEMIGCVAAQSI 1013



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 436  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 489


>gi|297798336|ref|XP_002867052.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312888|gb|EFH43311.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1839

 Score =  441 bits (1134), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/442 (52%), Positives = 285/442 (64%), Gaps = 61/442 (13%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MN LM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ R  + H D E      
Sbjct: 561 FMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAWHADTETG---- 616

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT+V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 617 FITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNYW 676

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G +IGIGDTIAD  T  +I   I  AK  V ++I++     L+P PG         
Sbjct: 677 LLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQEKKLDPEPGR-------- 728

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ +TFEN+VN++LN ARD  G
Sbjct: 729 --------------------------------------TMTETFENRVNQVLNKARDDAG 750

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KD
Sbjct: 751 SSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHFTKD 810

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 811 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 870

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNERPT- 491
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+   KY  D  N  PT 
Sbjct: 871 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDENWNPTY 930

Query: 492 --------LRNVSSLRRVVNSK 505
                   L+ +  LR V +++
Sbjct: 931 LSDEHLEDLKGIRELRDVFDAE 952



 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 248/514 (48%), Positives = 320/514 (62%), Gaps = 59/514 (11%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS +A +NATL F  L+RSTL +K V E Y+LS EAFEW++GEIE+RF Q+   
Sbjct: 1021 VPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVA 1080

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              ++I CV  Q+                 V  K +  G  R R + +  K    P     
Sbjct: 1081 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP----- 1135

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
               S    LTP      A   +EG      KT +       L  VT  T ++YDPDP +T
Sbjct: 1136 ---SLSVYLTP-----EASKSKEG-----AKTVQCALEYTTLRSVTQATEVWYDPDPMST 1182

Query: 1110 VIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
            +I ED EFV  YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  I+EKIN  F DD
Sbjct: 1183 IIEEDFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDD 1242

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQG 1225
            L CIFNDDNA+KL+LRIRIMN +  K  +QDE       EDD+FL+ IE+NML++M L+G
Sbjct: 1243 LTCIFNDDNAQKLILRIRIMNDEGPKGELQDE-----SAEDDVFLKKIESNMLTEMALRG 1297

Query: 1226 IEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSN 1285
            I  I KV++        ++    E G FK   +W+L+T+G +L+ V+   DVDP RT SN
Sbjct: 1298 IPDINKVFIK-----QVRKSRFDEEGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSN 1352

Query: 1286 DICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1345
             + EI +VLGIEAVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGIN
Sbjct: 1353 HLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1412

Query: 1346 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 1405
            R DTG LMRCSFEETVD+L+DAAA+AE D +RGV+ENI++GQL  +GTG  +L L+ E  
Sbjct: 1413 RNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEML 1472

Query: 1406 KDGIEIPLATGMMGGPAGMFFGSAATPSSIPGPP 1439
            K+ IE+ L + M     G+ FG     S + G P
Sbjct: 1473 KNAIELQLPSYM----DGLEFGMTPARSPVSGTP 1502



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 125/187 (66%), Gaps = 10/187 (5%)

Query: 773  LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            L +II VL   +VR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR
Sbjct: 1354 LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1413

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
             DTG LMRCSFEETVD+L+DAAA+AE D +RGV+ENI++GQL  +GTG  +L L+ E  K
Sbjct: 1414 NDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLK 1473

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTP-GGPG 948
            + IE+ L + M G   GM      TP+      TP+ +   + N L+SP   ++P     
Sbjct: 1474 NAIELQLPSYMDGLEFGM------TPARSPVSGTPYHEGMMSPNYLLSPNMRLSPMSDAQ 1527

Query: 949  FSPSVAG 955
            FSP V G
Sbjct: 1528 FSPYVGG 1534



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 779  SQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 838

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 839  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 880



 Score =  134 bits (337), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 93/156 (59%), Gaps = 37/156 (23%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTD 1586
            L  VT  T ++YDPDP +T+I ED EFV  YYEMPD D  P +ISPWLLRIEL+R+ M D
Sbjct: 1164 LRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVD 1223

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+EKIN  F DDL CIFNDDNA+KL
Sbjct: 1224 KKLS----------------------------MADIAEKINLEFDDDLTCIFNDDNAQKL 1255

Query: 1647 VLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIE 1680
            +LRIRIMN +  K  +QDE       EDD+FL+ IE
Sbjct: 1256 ILRIRIMNDEGPKGELQDE-----SAEDDVFLKKIE 1286



 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 67/86 (77%)

Query: 520  EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 579
            E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETVD+L+
Sbjct: 1373 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILL 1432

Query: 580  DAAAHAEADPMRGYIQRRLIKAMESV 605
            DAAA+AE D +RG  +  ++  +  +
Sbjct: 1433 DAAAYAETDCLRGVTENIMLGQLAPI 1458



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 855 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFD 914

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             ++++  +E       +++ L +L G                  ++LR +F        
Sbjct: 915 RTFKYEIDDENWNPTYLSDEHLEDLKG-----------------IRELRDVF-------- 949

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                     + E+ KL  DR  L  EI ++G+S   LP N+   I+  Q+
Sbjct: 950 ----------DAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQK 990



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ NRPVMGIVQDTL   RK+TKRD F++K V  NT ++++
Sbjct: 516  VLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWE 569



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 40/53 (75%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+  +LG +PKFARPDWM++ VLP+PP  VRP+V+M  ++R+++ + + L  +
Sbjct: 229 EDCQLLGFNPKFARPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMI 281


>gi|194460313|gb|ACF71831.1| RNA polymerase II [Euglossa samperi]
          Length = 241

 Score =  441 bits (1134), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/285 (76%), Positives = 228/285 (80%), Gaps = 46/285 (16%)

Query: 87  GKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVE 146
           GK  QPCILKPKPLWTGKQ+FSLIIPGNVNM RTH THPD+ED GPY+WISPGDTKV+VE
Sbjct: 3   GKXXQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHRTHPDEEDDGPYKWISPGDTKVMVE 62

Query: 147 HGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGD 206
           HG L+MGILCKK+LGTS+GSLLHIC LELG EVCGRFYGNIQTV+NNWLLLEGHSIGIGD
Sbjct: 63  HGELVMGILCKKTLGTSAGSLLHICMLELGPEVCGRFYGNIQTVINNWLLLEGHSIGIGD 122

Query: 207 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMA 266
           TIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                     
Sbjct: 123 TIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG--------------------- 161

Query: 267 IKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNN 326
                                    NTLRQTFENQVNRILNDARDKTGG AKKSLTEYNN
Sbjct: 162 -------------------------NTLRQTFENQVNRILNDARDKTGGCAKKSLTEYNN 196

Query: 327 LKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           LKAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFGFRK TLPHF
Sbjct: 197 LKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKXTLPHF 241



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/29 (93%), Positives = 28/29 (96%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHF 1037
            +QVIACVGQQNVEGKRIPFGFRK TLPHF
Sbjct: 213  SQVIACVGQQNVEGKRIPFGFRKXTLPHF 241


>gi|170652044|gb|ACB21799.1| RNA polymerase II [Meliwillea bivea]
          Length = 233

 Score =  441 bits (1134), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/279 (77%), Positives = 227/279 (81%), Gaps = 46/279 (16%)

Query: 76  MNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQW 135
           MNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+W
Sbjct: 1   MNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKW 60

Query: 136 ISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWL 195
           ISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWL
Sbjct: 61  ISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWL 120

Query: 196 LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIA 255
           LLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG          
Sbjct: 121 LLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG---------- 170

Query: 256 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG 315
                                               NTLRQTFENQVNRILNDARDKTGG
Sbjct: 171 ------------------------------------NTLRQTFENQVNRILNDARDKTGG 194

Query: 316 SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 354
           SAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNV
Sbjct: 195 SAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNV 233


>gi|33326215|gb|AAQ08517.1| RNA polymerase II largest subunit [Nymphaea odorata]
          Length = 1013

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/418 (54%), Positives = 280/418 (66%), Gaps = 52/418 (12%)

Query: 76  MNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQW 135
           MNILM+   +DGK+P P I+KP+PLWTGKQVF+LIIP  +N+ R  + H + E      +
Sbjct: 482 MNILMWWEDFDGKIPAPAIMKPRPLWTGKQVFNLIIPKQINLIRYSAWHSESETG----F 537

Query: 136 ISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWL 195
           I+PGDT V +E G LL G LCKK++GTSSGSL+H+ + E+G +   +F G+ Q +VN WL
Sbjct: 538 ITPGDTCVRIERGELLSGTLCKKTMGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 597

Query: 196 LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIA 255
           L                                    Q A           SIGIGDTIA
Sbjct: 598 L------------------------------------QNAF----------SIGIGDTIA 611

Query: 256 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG 315
           D  T  +I   I KAK +V E+I+ A    LE  PG T+ ++FEN+VN++LN ARD  G 
Sbjct: 612 DASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGS 671

Query: 316 SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD 375
           SA++SL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDD
Sbjct: 672 SAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDD 731

Query: 376 YGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVH 435
           YGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV 
Sbjct: 732 YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 791

Query: 436 YDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNERPT 491
           YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+   K+ FD  N  P+
Sbjct: 792 YDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKVFKFEFDDENWDPS 849



 Score =  153 bits (386), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 699  SQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 758

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 759  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 800



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 775 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFD 834

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             ++F+  +E         D + +L                  + K+L+ +F+ +V    
Sbjct: 835 KVFKFEFDDENWDPSYLQPDFVEDLK-----------------TIKELQDVFHAEV---- 873

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                         +KL  DR  L  EI ++G+++  +P NL  +I+  Q+
Sbjct: 874 --------------QKLETDRRQLATEIATTGDNSWPMPVNLKRLIWNAQK 910



 Score = 77.0 bits (188), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 52/73 (71%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V GED +S +A +NATL F  L+RST  +K V++ YRL+ EAF+W++GEIE+RF Q+   
Sbjct: 941  VPGEDAMSMEAQKNATLFFNILLRSTFASKRVSKEYRLTREAFDWVIGEIESRFLQSLVA 1000

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 1001 AGEMIGCVAAQSI 1013



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 436  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 489



 Score = 44.7 bits (104), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 42/53 (79%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+ ++LG++PK+ARPDWM++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 149 EDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 201


>gi|120561231|gb|ABM27001.1| RNA polymerase II largest subunit, partial [Coelomomyces
           stegomyiae]
          Length = 1014

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/410 (55%), Positives = 273/410 (66%), Gaps = 51/410 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           +M ILM++P WDG +P P ILKPKPLWTGKQ+ SLIIP  VN    HSTHPDDE +    
Sbjct: 476 VMCILMWVPGWDGNVPIPAILKPKPLWTGKQILSLIIP-KVNCIAFHSTHPDDEKTD--- 531

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            ISPGDTKV+VE G LL GI+CKK++GTSSG L+H+ ++E G E C  F    QT+VN W
Sbjct: 532 -ISPGDTKVIVEDGHLLAGIVCKKTVGTSSGGLVHVIWMEYGSEACKHFLNGCQTIVNYW 590

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           L+                                       HN       G SIGIGDTI
Sbjct: 591 LI---------------------------------------HN-------GFSIGIGDTI 604

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD +    I   I  AK  V ++I +A    L+P PG T+R+TFE +VN+ L+D     G
Sbjct: 605 ADNKAMEMINDIILAAKNQVSKLIGEAQKDHLKPQPGLTIRETFEAEVNQTLSDTVTSAG 664

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            +A++S  E NN+K MVVAGSKGS INISQ+ ACVGQQNVEGKRIPFGF+ RTLPHF+KD
Sbjct: 665 AAAQRSFKEQNNVKQMVVAGSKGSYINISQMSACVGQQNVEGKRIPFGFKYRTLPHFVKD 724

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D+ PESRGFVENSYL GL P EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E VMV
Sbjct: 725 DHSPESRGFVENSYLRGLNPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMV 784

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            YD TVRN+ G +IQ  YGEDG+    VE Q +D++ ++  +FE KYR D
Sbjct: 785 KYDGTVRNAQGNIIQFVYGEDGMDAIQVEKQTLDSLRMNDSRFESKYRID 834



 Score =  149 bits (377), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/143 (53%), Positives = 91/143 (63%), Gaps = 8/143 (5%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF+ RTLPHF+KDD+ PESRGFVENSYL GL P EFFFHAM
Sbjct: 693  SQMSACVGQQNVEGKRIPFGFKYRTLPHFVKDDHSPESRGFVENSYLRGLNPQEFFFHAM 752

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   +  + YD     TV       +   Y     D
Sbjct: 753  GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYD----GTVRNAQGNIIQFVYGEDGMD 808

Query: 1129 PTRISPWLLRIELDRKRMTDKKL 1151
              ++     +  LD  RM D + 
Sbjct: 809  AIQVE----KQTLDSLRMNDSRF 827



 Score = 95.5 bits (236), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 90/179 (50%), Gaps = 40/179 (22%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD TVRN+ G +IQ  YGEDG+    VE Q +D++ ++  +FE
Sbjct: 769 GYIQRRLVKALEDVMVKYDGTVRNAQGNIIQFVYGEDGMDAIQVEKQTLDSLRMNDSRFE 828

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KYR D                                ++D      L     E  +++ 
Sbjct: 829 SKYRID--------------------------------VMDIEGKAGLPPGCVEFGIQQE 856

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQRWKLWGNENL 770
           M S DV   L++E+ +L +DR  LR+IF +G++N  LP NL  +I        W  +NL
Sbjct: 857 MQSIDVQKLLDEEFSQLKDDRACLRKIFLTGDANWPLPMNLKRII--------WNAQNL 907



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 43/59 (72%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            + G+D++S +A +NATLL Q L+RSTL T+ V E + L S AF++++GEI  RF Q+ V
Sbjct: 937  IRGDDKISLEAQKNATLLTQILIRSTLATRRVIEEFHLDSRAFDYIIGEITFRFSQSFV 995



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            ++ + + P QI++PQ N+PVMGIVQDTL  +RK T+RD FL K T    + + P
Sbjct: 431  IQQLCMVPLQIVSPQGNKPVMGIVQDTLCGIRKFTQRDTFLTKSTVMCILMWVP 484


>gi|83320456|gb|ABC02855.1| RNA polymerase II largest subunit, partial [Boothiomyces
           macroporosum]
          Length = 999

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/416 (54%), Positives = 277/416 (66%), Gaps = 51/416 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           +++ +MN+LM++P WDG +P P ILKP PLWT KQV S+IIP  +NM   HSTHPDDE++
Sbjct: 462 HRDLLMNLLMWVPNWDGIIPMPAILKPIPLWTAKQVMSIIIP-QINMIGFHSTHPDDENT 520

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
                ISPGDTKV++E+G LL GILCKK++G+S+  ++H    E G E+   F+   Q V
Sbjct: 521 D----ISPGDTKVIIENGELLAGILCKKTVGSSASGVIHTSMNEHGPEITKDFFNGTQAV 576

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN WLL  G                                               SIGI
Sbjct: 577 VNYWLLQNGF----------------------------------------------SIGI 590

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIAD  T   I   I  AK++V ++I KA N +LE  PG T+R +FE+ VN  LN AR
Sbjct: 591 GDTIADKNTMKAINDTIAHAKKEVNKIILKAQNNELECLPGMTIRGSFESLVNMELNRAR 650

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           D  G SA+KSL E+NN+K MVVAGSKGS +NISQ+ ACVGQQNVEGKRIPFGF+ RTLPH
Sbjct: 651 DNAGKSAQKSLKEFNNVKQMVVAGSKGSFLNISQMTACVGQQNVEGKRIPFGFKDRTLPH 710

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F KDD+ PESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E
Sbjct: 711 FTKDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALE 770

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPS 486
              V YD TVRNS+G +IQ  YGEDG+ G  +E Q++ ++ +S   F+ KYR D S
Sbjct: 771 DATVKYDGTVRNSLGDIIQFSYGEDGMDGARLEKQKLPSMTMSDAAFKKKYRIDIS 826



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF+ RTLPHF KDD+ PESRGFVENSYL GLTP EFFFHAM
Sbjct: 683  SQMTACVGQQNVEGKRIPFGFKDRTLPHFTKDDHSPESRGFVENSYLRGLTPQEFFFHAM 742

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 743  GGREGLIDTAVKTAETGYIQRRLVKALEDATVKYDGTVRNSL 784



 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 36/168 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E   V YD TVRNS+G +IQ  YGEDG+ G  +E Q++ ++ +S   F+
Sbjct: 759 GYIQRRLVKALEDATVKYDGTVRNSLGDIIQFSYGEDGMDGARLEKQKLPSMTMSDAAFK 818

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KYR D S               ++   G        +++++ +        ++D+    
Sbjct: 819 KKYRIDISEP-------------QVFKPGSCEQSTYNDLINNPA--------SQDI---- 853

Query: 712 MGSGDVISELEKEWEKLCEDREALREIF--SSGESNVVLPCNLMEVIF 757
                    L++E+ +L +DR  LR +   +S      LP NL  +I+
Sbjct: 854 ---------LDREYNQLLKDRATLRNVIFKNSAIDKWTLPVNLERLIW 892



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 46/59 (77%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G DQLS +A +NATLLF  L+RSTL +K + E +RLS++AF+W++GEI+ RF QA V
Sbjct: 927  VRGNDQLSIEAQKNATLLFSILLRSTLASKRLIEEFRLSTQAFDWVLGEIDARFNQAIV 985



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 67/138 (48%), Gaps = 32/138 (23%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            ++ + + P+QI++PQ N PVMGIVQDTL  +RK TKRD FL +                 
Sbjct: 421  IQQLCMVPKQIVSPQKNAPVMGIVQDTLCGIRKFTKRDTFLHR----------------- 463

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLR-IELDRKRMTDKKLTMEAISEKINA-GFG--- 1603
                   +N+   +P++D     P +L+ I L        K  M  I  +IN  GF    
Sbjct: 464  ----DLLMNLLMWVPNWDGIIPMPAILKPIPL-----WTAKQVMSIIIPQINMIGFHSTH 514

Query: 1604 -DDLNTPLSPTDKKLTME 1620
             DD NT +SP D K+ +E
Sbjct: 515  PDDENTDISPGDTKVIIE 532



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 38/50 (76%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           EE + +G+ P +ARP+WM++TVLPVPP++VRP++ M G  R ++ + + L
Sbjct: 137 EECLKMGLSPIWARPEWMILTVLPVPPMAVRPSISMDGMGRGEDDLTHKL 186


>gi|170652081|gb|ACB21817.1| RNA polymerase II [Melipona quadrifasciata anthidioides]
          Length = 238

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/279 (77%), Positives = 227/279 (81%), Gaps = 46/279 (16%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 6   KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 65

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 66  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 125

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 126 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 179

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 180 ----------------------------------------NTLRQTFENQVNRILNDARD 199

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 350
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVG
Sbjct: 200 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG 238


>gi|356538329|ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
           [Glycine max]
          Length = 1827

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/419 (54%), Positives = 277/419 (66%), Gaps = 52/419 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ R  S H + E      
Sbjct: 559 FMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQINLIRYSSWHSESERGS--- 615

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            I+PGDT V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 616 -ITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 674

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL                                    Q A           SIGIGDTI
Sbjct: 675 LL------------------------------------QNAF----------SIGIGDTI 688

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD  T   I   I  AKE V ++I++A    LE  PG T+  +FEN+VN+ LN ARD  G
Sbjct: 689 ADASTMETINQTISAAKEKVKQLIREAQEKKLEAEPGRTMMDSFENRVNQTLNRARDDAG 748

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KD
Sbjct: 749 NSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKD 808

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 809 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 868

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNERPT 491
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+   +Y FD  N +PT
Sbjct: 869 KYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKTEFDRVFRYEFDDENWKPT 927



 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 238/512 (46%), Positives = 316/512 (61%), Gaps = 55/512 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V GED LS++A +NATLLF  L+RST  +K V E YRLS EAFEW+VGEIE+RF Q+   
Sbjct: 1019 VPGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVA 1078

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              ++I CV  Q+                 V  K +  G  R R + +  K    P    +
Sbjct: 1079 SGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVY 1138

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            + +                    G      K+ +       L  VT  T ++YDPDP +T
Sbjct: 1139 LRSDV------------------GKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMST 1180

Query: 1110 VIPEDQEFVNVYYEMPDFDPT--RISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
            +I ED +FV  YYEMPD +    +ISPWLLRIEL+R+ M DKKL+M  I+EKIN  F DD
Sbjct: 1181 IIEEDADFVKSYYEMPDEEVALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDD 1240

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIE 1227
            L CIFNDDNAEKL+LRIRIMN +  K + ++++    EDD+FL+ IE+NML++MTL+GI 
Sbjct: 1241 LTCIFNDDNAEKLILRIRIMNDEAPKGEIQDESA---EDDVFLKKIESNMLTEMTLRGIP 1297

Query: 1228 AIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDI 1287
             I KV++    T  +K     E+  FK   +W+L+T+G +L+ V+   DVD  RT SN +
Sbjct: 1298 DINKVFIK--NTKVQK---FDENQGFKPNEEWMLDTEGVNLLAVMCHEDVDATRTTSNHL 1352

Query: 1288 CEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 1347
             E+ +VLGIEAVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR 
Sbjct: 1353 IEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRN 1412

Query: 1348 DTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1407
            DTG +MRCSFEETVD+L+DAA +AE D +RGV+ENI++GQL  +GTG   L L+ E  K+
Sbjct: 1413 DTGPMMRCSFEETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGECALYLNDEMLKN 1472

Query: 1408 GIEIPLATGMMGGPAGMFFGSAATPSSIPGPP 1439
             IE+ L + M     G+ FG     S I G P
Sbjct: 1473 AIELQLPSYM----DGLDFGMTPARSPISGTP 1500



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/184 (47%), Positives = 122/184 (66%), Gaps = 7/184 (3%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DT
Sbjct: 1355 VIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1414

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G +MRCSFEETVD+L+DAA +AE D +RGV+ENI++GQL  +GTG   L L+ E  K+ I
Sbjct: 1415 GPMMRCSFEETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAI 1474

Query: 893  EIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPG-FSP 951
            E+ L + M G   GM      TP+      TP+ +   + + L+SP   ++P     FSP
Sbjct: 1475 ELQLPSYMDGLDFGM------TPARSPISGTPYHEGLMSPSYLLSPNLRLSPTSDAQFSP 1528

Query: 952  SVAG 955
             V G
Sbjct: 1529 YVGG 1532



 Score =  151 bits (381), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 777  SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 836

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 837  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 878



 Score =  130 bits (326), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/154 (47%), Positives = 93/154 (60%), Gaps = 33/154 (21%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPT--RISPWLLRIELDRKRMTD 1586
            L  VT  T ++YDPDP +T+I ED +FV  YYEMPD +    +ISPWLLRIEL+R+ M D
Sbjct: 1162 LRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEVALEKISPWLLRIELNREMMVD 1221

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+EKIN  F DDL CIFNDDNAEKL
Sbjct: 1222 KKLS----------------------------MADIAEKINLEFDDDLTCIFNDDNAEKL 1253

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            +LRIRIMN +  K + ++++    EDD+FL+ IE
Sbjct: 1254 ILRIRIMNDEAPKGEIQDESA---EDDVFLKKIE 1284



 Score =  120 bits (300), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 60/117 (51%), Positives = 79/117 (67%), Gaps = 8/117 (6%)

Query: 520  EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 579
            E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+
Sbjct: 1371 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1430

Query: 580  DAAAHAEADPMRGYIQRRLIKAM------ESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
            DAA +AE D +RG  +  ++  +      E  +   D  ++N++   +QL    DGL
Sbjct: 1431 DAAVYAETDYLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIE--LQLPSYMDGL 1485



 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 853 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKTEFD 912

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R++          F+++  +           LE+ + D  + ++ R +F        
Sbjct: 913 RVFRYE----------FDDENWKPTY-------MLEEPVEDLKTIREFRNVF-------- 947

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                     E E +KL  DR  L  EI ++G+S++ LP NL  +I+  Q+
Sbjct: 948 ----------EAEVQKLEADRYQLATEIATTGDSSLPLPVNLKRLIWNAQK 988



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F+ K
Sbjct: 514  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITK 556



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 41/53 (77%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+  +LG++PK+ARPDWM++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 227 EDCQLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 279


>gi|68300819|gb|AAY89350.1| RNA polymerase II largest subunit [Solanum lycopersicum]
          Length = 773

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/481 (49%), Positives = 298/481 (61%), Gaps = 71/481 (14%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ R    H D E      
Sbjct: 236 FMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQINLLRYSVWHNDSEKG---- 291

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT+V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 292 YITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWXEVGPDAARKFLGHTQWLVNYW 351

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL +  SIGIGDTIAD  T  +I   I  AK  V E+I+ A    LE  PG         
Sbjct: 352 LLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKLLEAEPGR-------- 403

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 404 --------------------------------------TMMESFENRVNQVLNKARDDAG 425

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KD
Sbjct: 426 SSAEKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKD 485

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 486 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 545

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRF--DPSNERPT- 491
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++      F+D Y +  D  N  P+ 
Sbjct: 546 KYDGTVRNSLGDVIQFLYGEDGMDSVWIETQKLDSLKAKKGTFDDMYAYEIDDPNWNPSY 605

Query: 492 --------LRNVSSLRRVVNSKPLLIGCWKLTSVEKEMNTVLQFYG-----LYVNYRHLA 538
                   L+ +  +R V +++       KL +   ++ T +   G     L VN + L 
Sbjct: 606 MLPEAVEDLKGIREIRSVFDAE-----VQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLV 660

Query: 539 L 539
           L
Sbjct: 661 L 661



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 454  SQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 513

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 514  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 555



 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++      F+
Sbjct: 530 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQKLDSLKAKKGTFD 589

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           D Y ++                                 +D  +W     +   + + +L
Sbjct: 590 DMYAYE---------------------------------IDDPNWNPSYML--PEAVEDL 614

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
            G  ++ S  + E +KL  DR  L  EI  +G+++  LP N+  ++   Q+
Sbjct: 615 KGIREIRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQK 665



 Score = 78.2 bits (191), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS +A +NATL F  L+RS L +K V + YRLS EAFEW+VGEIE+RF Q+   
Sbjct: 696  VPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVA 755

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 756  PGEMIGCVAAQSI 768



 Score = 57.4 bits (137), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 191  VLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWE 244


>gi|188532157|gb|ACD63090.1| RNA polymerase II largest subunit [Pisum sativum]
          Length = 1010

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/419 (54%), Positives = 277/419 (66%), Gaps = 52/419 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ R  S H ++ + GP  
Sbjct: 478 FMNILMWWEDFDGKVPAPTILKPEPLWTGKQVFNLIIPKQINLIRYSSWH-NEAERGP-- 534

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            I+PGDT V +E G LL G LCKK+LGT +GSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 535 -ITPGDTMVRIEKGELLTGTLCKKTLGTGTGSLIHVVWEEVGPDAARKFLGHTQWLVNYW 593

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL    SIGIGDTIAD  T   I   I +AK+ V ++I++A    LE  PG         
Sbjct: 594 LLQNAFSIGIGDTIADASTMETINQTISQAKDKVKQLIREAQEKKLEAEPGR-------- 645

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+  +FEN+VN+ LN ARD  G
Sbjct: 646 --------------------------------------TMMDSFENRVNQTLNKARDDAG 667

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KD
Sbjct: 668 NSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKD 727

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 728 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 787

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNERPT 491
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +    F+   +Y FD  N +PT
Sbjct: 788 KYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKTDFDRAFRYEFDDENWKPT 846



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 696  SQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 755

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 756  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 797



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +    F+
Sbjct: 772 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKTDFD 831

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R++  +E                 +      LE+ + D  + ++ R +F        
Sbjct: 832 RAFRYEFDDE-----------------NWKPTYMLEEPVEDLKTIREFRNVF-------- 866

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                     E E +KL  DR  L  EI ++G+S++ LP NL  +I+  Q+
Sbjct: 867 ----------EAEVQKLDADRFQLATEIATTGDSSLPLPVNLKRLIWNAQK 907



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 53/73 (72%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS++A +NATLLF  L+RST  +K V E YRLS EAFEW+VGEIE+RF Q+   
Sbjct: 938  VPGDDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVA 997

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 998  SGEMIGCVAAQSI 1010



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ NRPVMGIVQD+L   RK+TKRD F+ K V  N  ++++
Sbjct: 433  VLELMMVPKCIVSPQANRPVMGIVQDSLLGCRKITKRDTFIAKDVFMNILMWWE 486



 Score = 41.6 bits (96), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 41/53 (77%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+  +LG++PK+ARPDW+++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 146 EDCQLLGLNPKYARPDWLILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 198


>gi|262303453|gb|ACY44319.1| RNA polymerase largest subunit [Peripatus sp. 'Pep']
          Length = 654

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/298 (69%), Positives = 237/298 (79%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +E+MMN+LM+LP WDGK+PQP ILKPKPLWTGKQ+FSL+IPGNVN+ RTHSTHPD+ED G
Sbjct: 17  KEEMMNLLMWLPSWDGKIPQPAILKPKPLWTGKQIFSLVIPGNVNLIRTHSTHPDNEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++EHG L+ GILCKK+LGTSSGSL+HI  LELGHEV G+ YGNIQTVV
Sbjct: 77  PYKWISPGDTKVLIEHGDLISGILCKKTLGTSSGSLVHIVMLELGHEVAGQLYGNIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL+EGH+IGIGDTIADPQTY++IQ +IKKAK+DVIEVI+KAHN +LEPTPG      
Sbjct: 137 NNWLLIEGHTIGIGDTIADPQTYIDIQDSIKKAKQDVIEVIEKAHNDELEPTPG------ 190

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 191 ----------------------------------------NTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTGGSA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFR RTLP
Sbjct: 211 KTGGSAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLP 268



 Score =  241 bits (616), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 131/221 (59%), Positives = 148/221 (66%), Gaps = 20/221 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V GED++SKQA ENATLL   L+R+TLC+K V + ++LS+EAFEWL+GEIE RF QAQ  
Sbjct: 454  VPGEDRISKQAQENATLLMNILIRATLCSKRVTKEHKLSTEAFEWLLGEIETRFAQAQGQ 513

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
               G   V  K +  G  +  L   I     P++       +L G         A    E
Sbjct: 514  PXAG---VSAKNVTLGVPR--LKEIINISKKPKTPSLT--VFLTG--------QAARDAE 558

Query: 1073 GLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRI 1132
               D   +   T      L +VTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRI
Sbjct: 559  KAKDVLCRLEHTT-----LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTRI 613

Query: 1133 SPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFN 1173
            SPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFN
Sbjct: 614  SPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFN 654



 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/79 (97%), Positives = 77/79 (97%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 572  LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 631

Query: 1589 LTMEAISEKINAGFGDDLN 1607
            LTMEAISEKINAGFGDDLN
Sbjct: 632  LTMEAISEKINAGFGDDLN 650



 Score =  129 bits (325), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/278 (33%), Positives = 130/278 (46%), Gaps = 61/278 (21%)

Query: 604 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERQ 663
           SVMV YD TVRNS   L+QLRYGEDGL    VE Q +  +  S+K FE K++FD +NER+
Sbjct: 307 SVMVAYDGTVRNSQQYLVQLRYGEDGLDAVHVEFQSMPNLKPSNKNFEKKFKFDINNERE 366

Query: 664 LRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEK 723
           LRR  NED+++EL+GS   ISE+EKE                                  
Sbjct: 367 LRRNLNEDIVKELLGSAHAISEIEKE---------------------------------- 392

Query: 724 EWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQRWK------LWGNENLRFLCKII 777
            WE+L  DRE LR  F +G+S VVLPCNL    F +          L   E +R L K +
Sbjct: 393 -WEQLRNDRENLRSTFPTGDSKVVLPCNLQRXTFHINLRTPSDLNPLRVIEGVRDLSKKL 451

Query: 778 FVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 837
            ++     + K+     +   L +N    A LC     K H ++                
Sbjct: 452 IIVPGEDRISKQAQ---ENATLLMNILIRATLCSKRVTKEHKLSTE-------------- 494

Query: 838 CSFEETVDVLMDAAAHAEADPMRGVS-ENIIMGQLPRM 874
            +FE  +  +    A A+  P  GVS +N+ +G +PR+
Sbjct: 495 -AFEWLLGEIETRFAQAQGQPXAGVSAKNVTLG-VPRL 530



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 55/93 (59%), Gaps = 10/93 (10%)

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMV YD TVRNS   L+QLRYGEDGL    VE Q +  +  S+K FE K++FD +NER 
Sbjct: 307 SVMVAYDGTVRNSQQYLVQLRYGEDGLDAVHVEFQSMPNLKPSNKNFEKKFKFDINNER- 365

Query: 491 TLRNVSSLRRVVNS---KPLLIGCWKLTSVEKE 520
                  LRR +N    K LL     ++ +EKE
Sbjct: 366 ------ELRRNLNEDIVKELLGSAHAISEIEKE 392



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/27 (92%), Positives = 26/27 (96%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            +QVIACVGQQNVEGKRIPFGFR RTLP
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRHRTLP 268


>gi|33326219|gb|AAQ08519.1| RNA polymerase II largest subunit [Psilotum nudum]
          Length = 1013

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/414 (54%), Positives = 277/414 (66%), Gaps = 50/414 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKPKPLWTGKQ+FSLIIP  +N+ R  + H D E      
Sbjct: 481 FMNILMWWEDFDGKIPAPTILKPKPLWTGKQLFSLIIPKQINLIRFSAWHLDSEVGE--- 537

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            I+PGDT V +E G L+ G LCKK+LGTS GSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 538 -ITPGDTVVRIEKGELISGTLCKKTLGTSGGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 596

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G SIGIGDTIAD  T  +I  +I KAK +V E+I+ A    LE  PG         
Sbjct: 597 LLQHGFSIGIGDTIADAATMEKINESIAKAKNEVKELIKMAQEKQLEAEPGR-------- 648

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T  ++FEN+VN++LN ARD  G
Sbjct: 649 --------------------------------------TTMESFENRVNQVLNRARDDAG 670

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA++SL+E NN+KAMV AGSKGS INISQ+IACVGQQNVEGKRIPFGF  RTLPHF KD
Sbjct: 671 SSAQRSLSESNNVKAMVTAGSKGSFINISQMIACVGQQNVEGKRIPFGFVDRTLPHFTKD 730

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME VMV
Sbjct: 731 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVMV 790

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
            YD TVRNS+G +I+  YGEDG+    +E Q++D++ +  K+F+  Y F+  +E
Sbjct: 791 KYDGTVRNSLGDVIEFLYGEDGMDAVWIESQKLDSMKMKTKEFDRMYMFEIDSE 844



 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/102 (70%), Positives = 82/102 (80%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+IACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 699  SQMIACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 758

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 759  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSL 800



 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 34/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME VMV YD TVRNS+G +I+  YGEDG+    +E Q++D++ +  K+F+
Sbjct: 775 GYIQRRLVKAMEDVMVKYDGTVRNSLGDVIEFLYGEDGMDAVWIESQKLDSMKMKTKEFD 834

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             Y F+  +E      +N D +            L + + D  + ++ R +F+ +V    
Sbjct: 835 RMYMFEIDSEN-----WNPDYM------------LAEHVEDLKTIQEFRNVFDAEV---- 873

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                   +LE +  +LC       EI  SG+++  LP NL  +I+  Q+
Sbjct: 874 -------QKLEADRRQLCT------EIAPSGDNSWPLPVNLKRLIWNAQK 910



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 53/73 (72%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V GED++SK+A +NATL F  L+RSTL +K V + YRL+ EAFEW++GEIE RF Q+   
Sbjct: 941  VPGEDEISKEAQKNATLFFNILLRSTLASKRVLKEYRLTKEAFEWVIGEIETRFLQSIVA 1000

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 1001 PGEMIGCVAAQSI 1013



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 42/53 (79%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+ + LG++PK+ARPDWM++ VLP+PP SVRP+V+M  SAR+++ + + L  +
Sbjct: 149 EDCVTLGLNPKYARPDWMILQVLPIPPPSVRPSVMMDTSARSEDDLTHQLAMI 201



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPV+GIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 436  VLELMMVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWE 489


>gi|78190699|gb|ABB29671.1| DNA-directed RNA polymerase II largest subunit [Leucosolenia sp.
           AR-2003]
          Length = 363

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/328 (64%), Positives = 249/328 (75%), Gaps = 46/328 (14%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++E +M +LM++P W+GK+PQP ILKP+PLWTGKQ+FSL+IPGNVN  + HS HPD+ED 
Sbjct: 82  DRENVMQLLMWIPEWNGKIPQPAILKPRPLWTGKQLFSLVIPGNVNCVQYHSAHPDEEDD 141

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
            PY+ IS  DTKV++++G L+ GILCKKSLGTS GSL+HI F+E GH+   +FYGNIQT+
Sbjct: 142 SPYKHISVSDTKVLIDNGELICGILCKKSLGTSGGSLVHIVFMEEGHDTARKFYGNIQTL 201

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VNNWLL+EG                                              HSIGI
Sbjct: 202 VNNWLLIEG----------------------------------------------HSIGI 215

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GD IAD +TY EIQ  I  AK++V E+I+KAHN +LEP+PGNTLRQTFENQVNRILNDAR
Sbjct: 216 GDCIADSETYSEIQRYIAHAKQEVNEIIEKAHNDELEPSPGNTLRQTFENQVNRILNDAR 275

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DKTGGSA+KSL+E+NN KAMVVAGSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPH
Sbjct: 276 DKTGGSAQKSLSEFNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPH 335

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFF 398
           FIKDDYGPESRGFV+NSYLAGLTP+EFF
Sbjct: 336 FIKDDYGPESRGFVQNSYLAGLTPNEFF 363



 Score =  119 bits (298), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/67 (79%), Positives = 59/67 (88%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
            + G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPESRGFV+NSYLAG
Sbjct: 297  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVQNSYLAG 356

Query: 1058 LTPSEFF 1064
            LTP+EFF
Sbjct: 357  LTPNEFF 363



 Score = 73.9 bits (180), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 47/63 (74%), Gaps = 1/63 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            V+ + + PR I+TPQ+NRPVMGIVQDTLTAVRKMTKRDVF+D+      + + P+  N  
Sbjct: 41   VQQLALVPRMIVTPQSNRPVMGIVQDTLTAVRKMTKRDVFIDRENVMQLLMWIPE-WNGK 99

Query: 1549 IPE 1551
            IP+
Sbjct: 100  IPQ 102


>gi|357483939|ref|XP_003612256.1| DNA-directed RNA polymerase [Medicago truncatula]
 gi|355513591|gb|AES95214.1| DNA-directed RNA polymerase [Medicago truncatula]
          Length = 1864

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/423 (53%), Positives = 281/423 (66%), Gaps = 52/423 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           +++  MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ R  S H ++E  
Sbjct: 573 SKDVFMNILMWWEDFDGKVPAPTILKPEPLWTGKQVFNLIIPKQINLIRYSSWHNENE-R 631

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GP   I+PGDT V +E G LL G LCKK+LGT +GSL+H+ + E+G +   +F G+ Q +
Sbjct: 632 GP---ITPGDTMVRIEKGELLTGTLCKKTLGTGTGSLIHVIWEEVGPDAARKFLGHTQWL 688

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN WLL +  S                                              IGI
Sbjct: 689 VNYWLLQQAFS----------------------------------------------IGI 702

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIAD  T   I   I +AK+ V ++I++A    LE  PG T+  +FEN+VN+ LN AR
Sbjct: 703 GDTIADASTMETINQTISQAKDKVKQLIREAQEKKLEAEPGRTMMDSFENRVNQTLNRAR 762

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           D  G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPH
Sbjct: 763 DDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPH 822

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME
Sbjct: 823 FTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAME 882

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNE 488
            +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +    F+   +Y FD  N 
Sbjct: 883 DIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKTDFDRAFRYEFDDENW 942

Query: 489 RPT 491
           +PT
Sbjct: 943 KPT 945



 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 242/515 (46%), Positives = 319/515 (61%), Gaps = 68/515 (13%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V GED LS++A +NATLLF  L+RST  +K V E YRLS EAFEW+VGEIE+RF Q+   
Sbjct: 1037 VPGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVA 1096

Query: 1010 --QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
              ++I CV  Q++ G+                    P ++  +   + AG++        
Sbjct: 1097 SGEMIGCVAAQSI-GE--------------------PATQMTLNTFHYAGVSAKNVTLGV 1135

Query: 1068 MGGREGLIDTAVKTAETVNVLVFL-----------------------FQVTANTAIYYDP 1104
               RE  I    K  +T ++ V+L                         VT  T ++YDP
Sbjct: 1136 PRLRE--IINVAKRIKTPSLSVYLKPEVCKTKERAKNVQCALEYTTLRSVTQATEVWYDP 1193

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPT--RISPWLLRIELDRKRMTDKKLTMEAISEKINA 1162
            DP  T+I ED +FV  YYEMPD +    +ISPWLLRIEL+R+ M DKKL+M  I+EKIN 
Sbjct: 1194 DPMGTIIEEDVDFVKSYYEMPDEEVALDKISPWLLRIELNREMMVDKKLSMADIAEKINH 1253

Query: 1163 GFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSD 1220
             F  DL CIFNDDNAEKL+LRIRIMN +  K  +QDE       EDD+FL+ IE+NML++
Sbjct: 1254 EFDGDLTCIFNDDNAEKLILRIRIMNDEAPKGDIQDE-----SAEDDVFLKKIESNMLTE 1308

Query: 1221 MTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPV 1280
            MTL+GI  I KV++    T  +K     E+  FK   +W+L+T+G +L+ V+   DVD  
Sbjct: 1309 MTLRGIPDINKVFIK--NTKIQK---FDENEGFKPHEEWMLDTEGVNLLAVMCHEDVDAK 1363

Query: 1281 RTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAIT 1340
            RT SN + E+ +VLGIEAVR+S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAIT
Sbjct: 1364 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1423

Query: 1341 RHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1400
            RHGINR +TG +MRCSFEETVD+L+DAA +AE D +RGV+ENI++GQL  +GTG   LLL
Sbjct: 1424 RHGINRNETGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGECALLL 1483

Query: 1401 DAEKCKDGIEIPLATGMMGGPAGMFFGS---AATP 1432
            + E  K+ IE+ L + M G   GM  G    +ATP
Sbjct: 1484 NDEMLKNAIELQLPSYMEGLDFGMTPGRSPISATP 1518



 Score =  174 bits (441), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 90/184 (48%), Positives = 122/184 (66%), Gaps = 7/184 (3%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR +T
Sbjct: 1373 VIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNET 1432

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G +MRCSFEETVD+L+DAA +AE D +RGV+ENI++GQL  +GTG   LLL+ E  K+ I
Sbjct: 1433 GPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGECALLLNDEMLKNAI 1492

Query: 893  EIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPG-FSP 951
            E+ L + M G   GM      TP       TP+ +   + N L+SP   ++P     FSP
Sbjct: 1493 ELQLPSYMEGLDFGM------TPGRSPISATPYHEGLMSPNYLLSPNLRLSPSNDAQFSP 1546

Query: 952  SVAG 955
             V G
Sbjct: 1547 YVGG 1550



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 795  SQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 854

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 855  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 896



 Score =  125 bits (315), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 90/156 (57%), Gaps = 37/156 (23%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPT--RISPWLLRIELDRKRMTD 1586
            L  VT  T ++YDPDP  T+I ED +FV  YYEMPD +    +ISPWLLRIEL+R+ M D
Sbjct: 1180 LRSVTQATEVWYDPDPMGTIIEEDVDFVKSYYEMPDEEVALDKISPWLLRIELNREMMVD 1239

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+EKIN  F  DL CIFNDDNAEKL
Sbjct: 1240 KKLS----------------------------MADIAEKINHEFDGDLTCIFNDDNAEKL 1271

Query: 1647 VLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIE 1680
            +LRIRIMN +  K  +QDE       EDD+FL+ IE
Sbjct: 1272 ILRIRIMNDEAPKGDIQDE-----SAEDDVFLKKIE 1302



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 68/90 (75%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            S+  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR +TG +MRCSFEETV
Sbjct: 1385 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNETGPMMRCSFEETV 1444

Query: 576  DVLMDAAAHAEADPMRGYIQRRLIKAMESV 605
            D+L+DAA +AE D +RG  +  ++  +  +
Sbjct: 1445 DILLDAAVYAETDHLRGVTENIMLGQLAPI 1474



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 36/171 (21%)

Query: 592  GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
            GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +    F+
Sbjct: 871  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKTDFD 930

Query: 652  DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
              +R++          F+++  +           LE+ + D  + ++ R +F        
Sbjct: 931  RAFRYE----------FDDENWKPTY-------MLEEPVEDLKTIREFRNVF-------- 965

Query: 712  MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                      E E +KL  DR  L  EI ++G+S++ LP NL  +I+  Q+
Sbjct: 966  ----------EAEVQKLDADRVQLATEIATTGDSSLPLPVNLKRLIWNAQK 1006



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 29/137 (21%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            V  + + P+ I++PQ NRPVMGIVQD+L   RK+TKRD F+ K                 
Sbjct: 532  VLELMMVPKCIVSPQANRPVMGIVQDSLLGCRKITKRDTFISKDV--------------- 576

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKIN-----AGFG 1603
                  F+N+     DFD    +P +L+ E      T K++    I ++IN     +   
Sbjct: 577  ------FMNILMWWEDFDGKVPAPTILKPE---PLWTGKQVFNLIIPKQINLIRYSSWHN 627

Query: 1604 DDLNTPLSPTDKKLTME 1620
            ++   P++P D  + +E
Sbjct: 628  ENERGPITPGDTMVRIE 644



 Score = 41.2 bits (95), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 41/53 (77%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+  +LG++PK+ARPDW+++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 245 EDCQLLGLNPKYARPDWLILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 297


>gi|157841388|gb|ABV83148.1| RNA polymerase 2 [Panagrellus redivivus]
          Length = 636

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/411 (56%), Positives = 287/411 (69%), Gaps = 17/411 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
            V+G D++S+QA ENATLL   L+RST  TK VAE Y+L++EAFEW++GEIE+RF QA  Q
Sbjct: 233  VSGTDKISRQAQENATLLMNILLRSTFATKQVAEVYKLTNEAFEWIIGEIESRFNQAIVQ 292

Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-----VENSYLAGLTPSEFFF 1065
                VG    +    P         HF        + G      + N      TPS   F
Sbjct: 293  PGEMVGPLAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVF 352

Query: 1066 ---HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
                A    E   D   +   T      L +VT+NTAIYYDP+P+ T I EDQE+V ++Y
Sbjct: 353  LTGEATRKPEAAKDILCRLEHTT-----LRKVTSNTAIYYDPNPRQTCINEDQEWVGIFY 407

Query: 1123 EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1182
            E+   +   +SPWLLRIELDRKRMTDKKLTME I++KI  GFGDDL+ I+ DDNAEKLV 
Sbjct: 408  ELDPKNIDNVSPWLLRIELDRKRMTDKKLTMEMIADKITKGFGDDLHVIYTDDNAEKLVF 467

Query: 1183 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1242
             +R+ NS   K  D E+ +DKMEDD FLRC+E N+LSD+TLQGIE+I KVYMH P TD K
Sbjct: 468  HLRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGIESISKVYMHKPSTDDK 525

Query: 1243 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1302
            KR+++T  G+F+ IA+W+LETDGT+L+KVLSE  VD +RT+SNDICE+F+VLGIEAVRK+
Sbjct: 526  KRVVMTPEGDFQMIAEWILETDGTALLKVLSEPMVDGIRTYSNDICEVFEVLGIEAVRKA 585

Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1353
            +E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALM
Sbjct: 586  IEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALM 636



 Score =  215 bits (548), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/145 (73%), Positives = 120/145 (82%), Gaps = 2/145 (1%)

Query: 361 FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGY 420
           FGFR RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGY
Sbjct: 10  FGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 69

Query: 421 IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDK 480
           IQRRLIKAMESVMV+YD TVRNSVGQLIQ+RYGEDGL G  VE Q + T+ L++  FE K
Sbjct: 70  IQRRLIKAMESVMVNYDGTVRNSVGQLIQVRYGEDGLDGMWVESQTLPTMKLTNSLFEKK 129

Query: 481 YRFDPSNERPTLR--NVSSLRRVVN 503
           Y  +  +++   R  +V  +R + N
Sbjct: 130 YHLNIHDDKEMSRLYSVDVIRELRN 154



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 98/153 (64%), Gaps = 30/153 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT+NTAIYYDP+P+ T I EDQE+V ++YE+   +   +SPWLLRIELDRKRMTDKK
Sbjct: 376  LRKVTSNTAIYYDPNPRQTCINEDQEWVGIFYELDPKNIDNVSPWLLRIELDRKRMTDKK 435

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I++KI  GF                            GDDL+ I+ DDNAEKLV 
Sbjct: 436  LTMEMIADKITKGF----------------------------GDDLHVIYTDDNAEKLVF 467

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEE 1681
             +R+ NS   K  D E+ +DKMEDD FLRC+E+
Sbjct: 468  HLRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQ 498



 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/204 (40%), Positives = 112/204 (54%), Gaps = 50/204 (24%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQLIQ+RYGEDGL G  VE Q + T+ L++  FE
Sbjct: 68  GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQVRYGEDGLDGMWVESQTLPTMKLTNSLFE 127

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KY  +  +++++ R+++ DV+REL    +V  +LE                        
Sbjct: 128 KKYHLNIHDDKEMSRLYSVDVIRELRNDPEVQEKLE------------------------ 163

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQRWKLWGNENLR 771
                      +EW KLCEDR  LREIF  G++  VLPCNL  +I+  Q+          
Sbjct: 164 -----------QEWRKLCEDRAMLREIFPKGDAKTVLPCNLQRLIWNAQK---------- 202

Query: 772 FLCKIIFVLSVRKSVEKEMNTVLQ 795
                IF + +RK  E    T+++
Sbjct: 203 -----IFHVDLRKPTELHPATIIE 221



 Score =  131 bits (329), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/84 (72%), Positives = 68/84 (80%)

Query: 1027 FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVN 1086
            FGFR RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAET  
Sbjct: 10   FGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 69

Query: 1087 VLVFLFQVTANTAIYYDPDPQNTV 1110
            +   L +   +  + YD   +N+V
Sbjct: 70   IQRRLIKAMESVMVNYDGTVRNSV 93



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 57/67 (85%), Gaps = 3/67 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C++  VL   +VRK++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 570 ICEVFEVLGIEAVRKAIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 629

Query: 830 QDTGALM 836
           Q+ GALM
Sbjct: 630 QEVGALM 636



 Score = 94.7 bits (234), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/52 (80%), Positives = 47/52 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 567
           ++E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALM
Sbjct: 585 AIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALM 636


>gi|188532145|gb|ACD63084.1| RNA polymerase II largest subunit [Drimys winteri]
          Length = 1010

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/414 (53%), Positives = 277/414 (66%), Gaps = 50/414 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ R  + H + E      
Sbjct: 478 FMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLIRQSAWHSETETG---- 533

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +I+PGDT+V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 534 FITPGDTQVRIERGELLCGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 593

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G SIGIGDTIAD  T   I   I KAK DV E+I  A +  LE  PG         
Sbjct: 594 LLQNGFSIGIGDTIADAATMDTISETISKAKNDVKELIMAAQDKALEAEPGR-------- 645

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 646 --------------------------------------TMTESFENRVNQVLNKARDDAG 667

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+ SL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KD
Sbjct: 668 SSAQNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIGRTLPHFTKD 727

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 728 DNGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 787

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F++ +R++  N+
Sbjct: 788 KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKAEFDNVFRYEIDND 841



 Score =  147 bits (372), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 80/102 (78%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDD GPESRGFVENSYL GLTP EFFFHAM
Sbjct: 696  SQMTACVGQQNVEGKRIPYGFIGRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAM 755

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 756  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 797



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 772 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKAEFD 831

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + +R++  N+      +N   +            + + + D  + ++ R +F+ +V    
Sbjct: 832 NVFRYEIDNDN-----WNPSYM------------VPEHVEDLKTIREFRNVFDAEV---- 870

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                         +KL  DR  L  EI ++G+++  +P NL  +I+  Q+
Sbjct: 871 --------------QKLEADRYQLGSEIATTGDNSWPMPVNLKRLIWNAQK 907



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 51/73 (69%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F  L+RST  +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 938  VPGDDPISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVA 997

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 998  PGEMIGCVAAQSI 1010



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 433  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 486



 Score = 44.7 bits (104), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 41/53 (77%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+  +LG+DPK+ARPDWM++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 146 EDCRLLGLDPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 198


>gi|157841440|gb|ABV83182.1| RNA polymerase 2 [Rhabditoides regina]
          Length = 426

 Score =  439 bits (1128), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/409 (56%), Positives = 286/409 (69%), Gaps = 16/409 (3%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
            V+G+D++SKQA  NATLL   L+RSTLC+K +AE ++L+ E FEWL+GEIE RFQ A  Q
Sbjct: 24   VSGDDRISKQAQYNATLLMNILIRSTLCSKQMAEKHKLNEEGFEWLLGEIETRFQLAIAQ 83

Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-----VENSYLAGLTPS-EFF 1064
                VG    +    P         HF        + G      + N   +  TPS   F
Sbjct: 84   PGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVF 143

Query: 1065 FHAMGGREGLIDTAV--KTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
             H    ++      V  K   T      L +VT+NTAIYYDPDP+NT I ED+E+V+++ 
Sbjct: 144  LHGAAAKDAEKAKDVLCKLEHTT-----LRKVTSNTAIYYDPDPKNTCIEEDEEWVSIFX 198

Query: 1123 EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1182
                  P+R SPWLLRIELDRKRMTDKKLTME+I+++I+ GFGDDLN I+    A+KLV 
Sbjct: 199  XXXXXXPSRCSPWLLRIELDRKRMTDKKLTMESIADRIHQGFGDDLNVIYTXXXADKLVF 258

Query: 1183 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1242
            R+RI N  + K + EE  VDKMEDD+FLRCIE+NMLSD+TLQGIEAI KVYMH P TD K
Sbjct: 259  RLRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGIEAIAKVYMHKPTTDDK 317

Query: 1243 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1302
            KR++IT  G FKAI +WLLETDGT+L++VL+E  VDP+RT SNDICEIF+VLGIEAVRK 
Sbjct: 318  KRMVITPEGGFKAIPEWLLETDGTALLRVLAESAVDPIRTSSNDICEIFEVLGIEAVRKG 377

Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 1351
            +E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GA
Sbjct: 378  IEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGA 426



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/152 (51%), Positives = 98/152 (64%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT+NTAIYYDPDP+NT I ED+E+V+++       P+R SPWLLRIELDRKRMTDKK
Sbjct: 167  LRKVTSNTAIYYDPDPKNTCIEEDEEWVSIFXXXXXXXPSRCSPWLLRIELDRKRMTDKK 226

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME+I+++I+ GFGDDLN                             I+    A+KLV 
Sbjct: 227  LTMESIADRIHQGFGDDLNV----------------------------IYTXXXADKLVF 258

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N  + K + EE  VDKMEDD+FLRCIE
Sbjct: 259  RLRITNQSEDKGETEEQ-VDKMEDDVFLRCIE 289



 Score = 98.2 bits (243), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 54/65 (83%), Gaps = 3/65 (4%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK +E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 362 ICEIFEVLGIEAVRKGIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 421

Query: 830 QDTGA 834
           Q+ GA
Sbjct: 422 QEVGA 426



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 44/49 (89%)

Query: 517 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 565
           +E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GA
Sbjct: 378 IEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGA 426


>gi|357527981|gb|AET80278.1| RNA polymerase II large subunit [Hypodoryctes sp. ALW-2011]
          Length = 306

 Score =  438 bits (1127), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/278 (76%), Positives = 225/278 (80%), Gaps = 46/278 (16%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 75  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 134

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 135 PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 194

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADP TYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 195 NNWLLLEGHSIGIGDTIADPNTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------ 248

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 249 ----------------------------------------NTLRQTFENQVNRILNDARD 268

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACV 349
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACV
Sbjct: 269 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV 306



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 33   VENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 75


>gi|356605938|gb|AET25000.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 13
            KK-2011]
          Length = 623

 Score =  438 bits (1126), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/417 (55%), Positives = 291/417 (69%), Gaps = 42/417 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G+D +SKQA  NATLL   L+RSTLCTK +  + +L++EAF+WL+GE+E+RF QA  I
Sbjct: 226  VCGDDDISKQAQYNATLLMNILLRSTLCTKKLCSSSKLNTEAFDWLLGEVESRFMQA--I 283

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
            A  G+       +      ++L         P ++  +   + AG++           +E
Sbjct: 284  AQPGE-------MVGALAAQSLGE-------PATQMTLNTFHYAGVSAKNVTLGVPRLKE 329

Query: 1073 GLIDTAVKTAETVNVLVFLF-----------------------QVTANTAIYYDPDPQNT 1109
              I    K  +T ++ VFL                        +VTANTAIYYDPDP+NT
Sbjct: 330  --IINVSKQLKTPSLTVFLTGAAAKDAEKAKDVLCKLEHTTLKKVTANTAIYYDPDPKNT 387

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            VI ED+E+V+++YEMPD D  R SPWLLRIELDRKRMTDKKLTME I+E+I +GFG+D++
Sbjct: 388  VIGEDEEWVSIFYEMPDTDLDRTSPWLLRIELDRKRMTDKKLTMETIAERIQSGFGNDVH 447

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV R+RI   D S    EE+ V+KMEDD+FLRCIEANML+D+TLQGI  I
Sbjct: 448  TIYTDDNAEKLVFRLRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGIPQI 506

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYM+ P TD KKRI+IT  G FKAI +W+LETDGT+L++VLSER +DPVRT SNDICE
Sbjct: 507  AKVYMNQPNTDDKKRIVITPEGGFKAITEWILETDGTALLRVLSERQIDPVRTSSNDICE 566

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1346
            IF VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 567  IFAVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 623



 Score =  214 bits (544), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 101/131 (77%), Positives = 114/131 (87%)

Query: 359 IPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 418
           IPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET
Sbjct: 1   IPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 60

Query: 419 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 478
           GYIQRRLIKAMESVMV YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 61  GYIQRRLIKAMESVMVMYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNNAVFE 120

Query: 479 DKYRFDPSNER 489
             +R D ++E+
Sbjct: 121 RDFRTDLTDEK 131



 Score =  170 bits (430), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 88/152 (57%), Positives = 105/152 (69%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+NTVI ED+E+V+++YEMPD D  R SPWLLRIELDRKRMTDKK
Sbjct: 369  LKKVTANTAIYYDPDPKNTVIGEDEEWVSIFYEMPDTDLDRTSPWLLRIELDRKRMTDKK 428

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+E+I +GFG+D++T                            I+ DDNAEKLV 
Sbjct: 429  LTMETIAERIQSGFGNDVHT----------------------------IYTDDNAEKLVF 460

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   D S    EE+ V+KMEDD+FLRCIE
Sbjct: 461  RLRIAGEDKSGEAQEEN-VEKMEDDVFLRCIE 491



 Score =  135 bits (339), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 70/86 (81%)

Query: 1025 IPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 1084
            IPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET
Sbjct: 1    IPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 60

Query: 1085 VNVLVFLFQVTANTAIYYDPDPQNTV 1110
              +   L +   +  + YD   +N++
Sbjct: 61   GYIQRRLIKAMESVMVMYDGTVRNSL 86



 Score =  132 bits (333), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 101/170 (59%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 61  GYIQRRLIKAMESVMVMYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNNAVFE 120

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++E+ +R+ ++EDV+REL  S D I     E+V                    
Sbjct: 121 RDFRTDLTDEKFMRKSYSEDVIRELQESQDAI-----ELV-------------------- 155

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     E EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 156 ----------ESEWTQLEEDRRLLRKIFPKGDAKIVLPCNLQRLIWNAQK 195



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/60 (71%), Positives = 51/60 (85%), Gaps = 3/60 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 564 ICEIFAVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 623



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/45 (80%), Positives = 41/45 (91%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 560
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 579 AIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 623


>gi|120561225|gb|ABM26998.1| RNA polymerase II largest subunit, partial [Allomyces macrogynus]
          Length = 1008

 Score =  438 bits (1126), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/414 (53%), Positives = 275/414 (66%), Gaps = 51/414 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++  +MN+LM++P WDG +P P I+KPKPLWTGKQ+ SL+IP  VN    HSTHPDDE +
Sbjct: 466 DKNMVMNLLMWVPNWDGNVPPPAIMKPKPLWTGKQILSLVIP-KVNCITHHSTHPDDEST 524

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
                ISPGDT+V+VE G LL GI+CKK++G ++G L+H+ ++E G E         QT+
Sbjct: 525 D----ISPGDTRVIVEDGELLAGIVCKKTVGAAAGGLVHVSWMEHGPEAAKALLNGCQTI 580

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN WLL                                       HN       G SIGI
Sbjct: 581 VNYWLL---------------------------------------HN-------GFSIGI 594

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIAD  T  +I   I  A++ V + I  A    L+   G TLR+TFE QVNR LN+A 
Sbjct: 595 GDTIADDATMAQINKIIASARDTVKQTIHTAQRGQLKAMTGMTLRETFEAQVNRALNEAV 654

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           +K G +A KS    NN+K MVV+GSKGSNINISQ+ ACVGQQNVEGKRIPFGF+ R+LPH
Sbjct: 655 NKAGSAAAKSFKVSNNVKQMVVSGSKGSNINISQMSACVGQQNVEGKRIPFGFQYRSLPH 714

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F+KDDY PESRGFVENSYL GL+P EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKA+E
Sbjct: 715 FVKDDYSPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKALE 774

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            +MV YD TVRN+ G +IQ  YGEDG+ G  VE Q ++ + +++ +FE +YR D
Sbjct: 775 DIMVKYDGTVRNAQGHIIQFAYGEDGMDGTRVEAQILEPLRMNNHRFERRYRID 828



 Score =  154 bits (389), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 79/155 (50%), Positives = 101/155 (65%), Gaps = 5/155 (3%)

Query: 984  VAENYRLSSEAFEWLV-GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDY 1042
             A+++++S+   + +V G   +    +Q+ ACVGQQNVEGKRIPFGF+ R+LPHF+KDDY
Sbjct: 661  AAKSFKVSNNVKQMVVSGSKGSNINISQMSACVGQQNVEGKRIPFGFQYRSLPHFVKDDY 720

Query: 1043 GPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYY 1102
             PESRGFVENSYL GL+P EFFFHAMGGREGLIDTAVKTAET  +   L +   +  + Y
Sbjct: 721  SPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKALEDIMVKY 780

Query: 1103 DPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLL 1137
            D     TV       +   Y     D TR+   +L
Sbjct: 781  D----GTVRNAQGHIIQFAYGEDGMDGTRVEAQIL 811



 Score = 97.8 bits (242), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 90/179 (50%), Gaps = 40/179 (22%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKA+E +MV YD TVRN+ G +IQ  YGEDG+ G  VE Q ++ + +++ +FE
Sbjct: 763 GYIQRRLIKALEDIMVKYDGTVRNAQGHIIQFAYGEDGMDGTRVEAQILEPLRMNNHRFE 822

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YR D                                + D    K L+    E  +++ 
Sbjct: 823 RRYRID--------------------------------LTDPEGKKGLKPGSVEFGIQQE 850

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQRWKLWGNENL 770
           M S +V   L++E+ +L EDRE LR IF  G++   LP N+  +I        W  +NL
Sbjct: 851 MQSIEVQQLLDQEYRQLEEDRERLRHIFPRGDARWPLPGNIQRII--------WNAQNL 901



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 42/61 (68%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            + G D++S +A  NATLL Q LVRSTL TK V E +RL   AF++++GEI  RF Q+ V 
Sbjct: 931  IPGTDKISVEAQRNATLLSQILVRSTLATKRVIEEFRLDKRAFDYVLGEIATRFAQSLVH 990

Query: 1013 A 1013
            A
Sbjct: 991  A 991



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 40/62 (64%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            ++ + + P QII+PQ+N+PVMGIVQDTL  + K T+RD F+DK      + + P+    V
Sbjct: 425  IQQLCMVPLQIISPQSNKPVMGIVQDTLCGITKFTRRDTFMDKNMVMNLLMWVPNWDGNV 484

Query: 1549 IP 1550
             P
Sbjct: 485  PP 486


>gi|157841368|gb|ABV83138.1| RNA polymerase 2 [Oscheius tipulae]
          Length = 629

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/417 (56%), Positives = 294/417 (70%), Gaps = 42/417 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V GED++S+QA  NATLL   L+RSTLC+K +A  ++L+ EAF+WL+GEIE RF+ A   
Sbjct: 232  VGGEDRISRQAQFNATLLMNILLRSTLCSKKMATTHKLNQEAFDWLLGEIETRFKSAIAQ 291

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  +  Q+                 V  K +  G  R + + +  K    P    F
Sbjct: 292  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVF 351

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            ++ S             A    E   D   K   T      L +VTANTAIYYDPD +NT
Sbjct: 352  LQGS-------------AAKDAEKAKDVLCKLEHTT-----LRKVTANTAIYYDPDVRNT 393

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
             I ED+E+V+++YEMPDFDPTR SPWLLR+ELDR+RMTDKKL+ME I++KI+AGFGDDLN
Sbjct: 394  CIEEDEEWVSIFYEMPDFDPTRSSPWLLRLELDRRRMTDKKLSMEQIADKIHAGFGDDLN 453

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV RIRI N  D K+ +EE  +DKMEDDMFLRCIE+NMLSD+TLQGI +I
Sbjct: 454  VIYTDDNAEKLVFRIRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGISSI 512

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYM+ P TD KK++IIT  G+FK I+DW+LETDGT+L++VLSE  +DP +T SNDICE
Sbjct: 513  AKVYMYKPNTDDKKKVIITPEGDFKHISDWILETDGTALLRVLSEPSIDPAKTTSNDICE 572

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1346
            IF+VLGIEAVRKS+EKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 573  IFEVLGIEAVRKSIEKEMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 629



 Score =  230 bits (587), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 113/158 (71%), Positives = 131/158 (82%), Gaps = 1/158 (0%)

Query: 353 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 412
           NVEGKRIPFGFR R+LPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 1   NVEGKRIPFGFRHRSLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTA 60

Query: 413 VKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVAL 472
           VKTAETGYIQRRLIKAMESVMV+YD TVRNS+GQ++QLRYGEDGL G  VE+Q + T+  
Sbjct: 61  VKTAETGYIQRRLIKAMESVMVNYDGTVRNSIGQMVQLRYGEDGLDGMWVENQVMSTMKP 120

Query: 473 SHKKFEDKYRFDPSNERPTLRNVSS-LRRVVNSKPLLI 509
           S+  FE  ++ D S+E+   R  S  L R + ++P  I
Sbjct: 121 SNALFERDFKLDLSDEKMMRRCYSEDLYRELQNEPEAI 158



 Score =  161 bits (407), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 108/152 (71%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPD +NT I ED+E+V+++YEMPDFDPTR SPWLLR+ELDR+RMTDKK
Sbjct: 375  LRKVTANTAIYYDPDVRNTCIEEDEEWVSIFYEMPDFDPTRSSPWLLRLELDRRRMTDKK 434

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L+                            ME I++KI+AGFGDDLN I+ DDNAEKLV 
Sbjct: 435  LS----------------------------MEQIADKIHAGFGDDLNVIYTDDNAEKLVF 466

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRI N  D K+ +EE  +DKMEDDMFLRCIE
Sbjct: 467  RIRITNQGDDKLAEEEQ-IDKMEDDMFLRCIE 497



 Score =  145 bits (365), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/92 (71%), Positives = 76/92 (82%)

Query: 1019 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 1078
            NVEGKRIPFGFR R+LPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 1    NVEGKRIPFGFRHRSLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTA 60

Query: 1079 VKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            VKTAET  +   L +   +  + YD   +N++
Sbjct: 61   VKTAETGYIQRRLIKAMESVMVNYDGTVRNSI 92



 Score =  137 bits (344), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 100/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+GQ++QLRYGEDGL G  VE+Q + T+  S+  FE
Sbjct: 67  GYIQRRLIKAMESVMVNYDGTVRNSIGQMVQLRYGEDGLDGMWVENQVMSTMKPSNALFE 126

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             ++ D S+E+ +RR ++ED+ REL    + I E+                         
Sbjct: 127 RDFKLDLSDEKMMRRCYSEDLYRELQNEPEAIEEI------------------------- 161

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                     E EW +L EDR  LR+ F +G++ VVLPCNL  +I+  Q+
Sbjct: 162 ----------ENEWAQLEEDRRLLRKTFPNGDNKVVLPCNLQRLIWNAQK 201



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 51/60 (85%), Gaps = 3/60 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRKS+EKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 570 ICEIFEVLGIEAVRKSIEKEMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 629



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/45 (86%), Positives = 41/45 (91%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 560
           S+EKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 585 SIEKEMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 629


>gi|50346879|gb|AAT75146.1| RNA polymerase 2 [Caenorhabditis japonica]
          Length = 608

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/413 (56%), Positives = 284/413 (68%), Gaps = 42/413 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G D++SKQA  NATLL   L+RSTLCTK +    +L++EAF+WL+GEIE RFQQA   
Sbjct: 215  VCGNDEISKQAQYNATLLMNILLRSTLCTKKMCTTAKLNTEAFDWLLGEIETRFQQAIAQ 274

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  +  Q+                 V  K +  G  R + + +  K    P     
Sbjct: 275  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSL--- 331

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
                YL G         A    E   D   K   T      L +VT NTAIYYDPDP+NT
Sbjct: 332  --TVYLTG--------AAARDAEKAKDVLCKLEHTT-----LKKVTCNTAIYYDPDPKNT 376

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            VI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKKLTME I+++I+ GFG D++
Sbjct: 377  VITEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGSDVH 436

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV R+RI   +D     +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI
Sbjct: 437  TIYTDDNAEKLVFRLRIA-GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAI 495

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYM+ P TD KKRIIIT  G FKA+ADW+LETDGT+L++VLSER +DPVRT SNDICE
Sbjct: 496  SKVYMNQPNTDDKKRIIITPEGGFKAVADWILETDGTALLRVLSERQIDPVRTSSNDICE 555

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1342
            IF+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRH
Sbjct: 556  IFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRH 608



 Score =  194 bits (492), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 93/127 (73%), Positives = 107/127 (84%)

Query: 370 HFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 429
           HFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM
Sbjct: 1   HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 60

Query: 430 ESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           ESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE  +R D ++ R
Sbjct: 61  ESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNR 120

Query: 490 PTLRNVS 496
              +N S
Sbjct: 121 FLRKNYS 127



 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/152 (55%), Positives = 103/152 (67%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKK
Sbjct: 358  LKKVTCNTAIYYDPDPKNTVITEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKK 417

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+ GFG D++T                            I+ DDNAEKLV 
Sbjct: 418  LTMEMIADRIHGGFGSDVHT----------------------------IYTDDNAEKLVF 449

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   +D     +E+ VDKMEDD+FLRCIE
Sbjct: 450  RLRIA-GEDKGADTQEEQVDKMEDDVFLRCIE 480



 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 100/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 50  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 109

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++ R LR+ ++EDV+RE+  S D IS +E                        
Sbjct: 110 RDFRMDLTDNRFLRKNYSEDVVREIQESEDGISLVE------------------------ 145

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 146 -----------SEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQK 184



 Score =  112 bits (279), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 60/75 (80%)

Query: 1036 HFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVT 1095
            HFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET  +   L +  
Sbjct: 1    HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 60

Query: 1096 ANTAIYYDPDPQNTV 1110
             +  + YD   +N++
Sbjct: 61   ESVMVNYDGTVRNSL 75



 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/56 (69%), Positives = 47/56 (83%), Gaps = 3/56 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 825
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRH
Sbjct: 553 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRH 608



 Score = 74.7 bits (182), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/41 (78%), Positives = 37/41 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 556
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRH
Sbjct: 568 AIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRH 608


>gi|33326207|gb|AAQ08513.1| RNA polymerase II largest subunit [Pinus nigra]
          Length = 1013

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/418 (54%), Positives = 279/418 (66%), Gaps = 52/418 (12%)

Query: 76  MNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQW 135
           MNILM+   +DGK+P P I KP+P+WTGKQVF+LIIP  +N+ RT + H + E SG    
Sbjct: 482 MNILMWWEDFDGKIPAPTIYKPRPIWTGKQVFNLIIPKQINLIRTSAWHSESE-SGV--- 537

Query: 136 ISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWL 195
           I+PGDT V +E G ++ G LCKK+LGTSSGSL+H+ + E+G +   +F G+ Q +VN WL
Sbjct: 538 ITPGDTLVRIEKGEVISGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 597

Query: 196 LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIA 255
           L +G SIGIGDTIAD  T   I   I KAK +V  +I+ A    LE  PG          
Sbjct: 598 LQQGFSIGIGDTIADAATMEVINETISKAKNEVKMLIKAAQEKQLEAEPGR--------- 648

Query: 256 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG 315
                                                T+ ++FEN+VN++LN ARD  G 
Sbjct: 649 -------------------------------------TMMESFENRVNQVLNKARDDAGS 671

Query: 316 SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD 375
           SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KDD
Sbjct: 672 SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFDGRTLPHFTKDD 731

Query: 376 YGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVH 435
            GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV 
Sbjct: 732 KGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 791

Query: 436 YDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNERPT 491
           YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  K+FE+  KY  D  N  P+
Sbjct: 792 YDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFENVYKYELDQENWNPS 849



 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 80/102 (78%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDD GPESRGFVENSYL GLTP EFFFHAM
Sbjct: 699  SQMTACVGQQNVEGKRIPYGFDGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAM 758

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 759  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 800



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  K+FE
Sbjct: 775 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFE 834

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + Y+++   E      +N   +            L + + D  + ++ + +F+ +V    
Sbjct: 835 NVYKYELDQEN-----WNPSYM------------LPEHVEDLKTIREFQNVFDAEV---- 873

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                         +KL  DR  L  EI  SG+++  LP NL  +I+  Q+
Sbjct: 874 --------------QKLESDRRQLGMEIAPSGDNSWPLPVNLKRLIWNSQK 910



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 50/73 (68%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F  L+RST  +K V + Y L+ EAFEW+VGEIE+RF Q+   
Sbjct: 941  VPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYHLTREAFEWVVGEIESRFLQSLVA 1000

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 1001 PGEMIGCVAAQSI 1013



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 436  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 489


>gi|157841434|gb|ABV83178.1| RNA polymerase 2 [Bunonema reticulatum]
          Length = 614

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/407 (56%), Positives = 281/407 (69%), Gaps = 42/407 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V+GED +S+ A ENATLL + L+RSTLC++ +AE +RL++EAFEWL+GE+  RFQQA   
Sbjct: 218  VSGEDHISQHAQENATLLIKILLRSTLCSRKMAEQHRLNAEAFEWLLGEVXTRFQQAXXX 277

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
                   +  + +     + TL  F                + AG++           +E
Sbjct: 278  XXXXXXALAAQSLGEPATQMTLNTF----------------HYAGVSAKNVTLGVPRLKE 321

Query: 1073 GLIDTAVKTAETVNVLVFLF-----------------------QVTANTAIYYDPDPQNT 1109
              I    K  +T ++ VFL                        +VTANTAIYYDPDP NT
Sbjct: 322  --IINVSKQPKTPSLTVFLRGAAAKDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPVNT 379

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
             I ED E+V+++YEMPD D  R+SPWLLRIELDRKRMTDKKLTM+A+++ I  GFGDDLN
Sbjct: 380  QIAEDAEWVSIFYEMPDVDHARVSPWLLRIELDRKRMTDKKLTMDAVADCIRRGFGDDLN 439

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             ++ DDNAEKLV+RIRI NSD  K   EE  VDKMEDD FLRCIEANMLS++TLQGIE+I
Sbjct: 440  IVYTDDNAEKLVIRIRIANSDAEKGATEEQ-VDKMEDDGFLRCIEANMLSELTLQGIESI 498

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYMH P TD KKR++IT  G FKA+A+WLLETDGT+L+KVLS+RDVDPVRT SNDICE
Sbjct: 499  TKVYMHKPTTDDKKRMVITPEGGFKAVAEWLLETDGTALLKVLSDRDVDPVRTTSNDICE 558

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 1336
            IF VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHL
Sbjct: 559  IFAVLGIEAVRKAIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHL 605



 Score =  194 bits (494), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/123 (75%), Positives = 104/123 (84%)

Query: 367 TLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLI 426
           TLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLI
Sbjct: 1   TLPHFIKDDYGPESRGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTAETGYIQRRLI 60

Query: 427 KAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPS 486
           KAMESVMV+YD TV NS+GQ  QLRYGEDGL G  VE+Q   T+  +   FE +++ D  
Sbjct: 61  KAMESVMVNYDGTVXNSIGQXXQLRYGEDGLDGTWVENQXXPTMKPNDALFEKEFKLDLG 120

Query: 487 NER 489
           ++R
Sbjct: 121 DDR 123



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/152 (59%), Positives = 102/152 (67%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP NT I ED E+V+++YEMPD D  R+SPWLLRIELDRKRMTDKK
Sbjct: 361  LRKVTANTAIYYDPDPVNTQIAEDAEWVSIFYEMPDVDHARVSPWLLRIELDRKRMTDKK 420

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L                            TM+A+++ I  GFGDDLN ++ DDNAEKLV+
Sbjct: 421  L----------------------------TMDAVADCIRRGFGDDLNIVYTDDNAEKLVI 452

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRI NSD  K   EE  VDKMEDD FLRCIE
Sbjct: 453  RIRIANSDAEKGATEEQ-VDKMEDDGFLRCIE 483



 Score =  132 bits (333), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 98/170 (57%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TV NS+GQ  QLRYGEDGL G  VE+Q   T+  +   FE
Sbjct: 53  GYIQRRLIKAMESVMVNYDGTVXNSIGQXXQLRYGEDGLDGTWVENQXXPTMKPNDALFE 112

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++ D  ++R LRRI+ EDV+R L  S   ++E+E+E      WKQ             
Sbjct: 113 KEFKLDLGDDRLLRRIYTEDVIRSLQSSAVSLNEVEEE------WKQ------------- 153

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                           L +DR  LREIF  G++ VVLPCN+  +I+  Q+
Sbjct: 154 ----------------LVKDRRTLREIFPKGDAKVVLPCNVQRLIWNAQK 187



 Score =  119 bits (297), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/78 (70%), Positives = 62/78 (79%)

Query: 1033 TLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLF 1092
            TLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAET  +   L 
Sbjct: 1    TLPHFIKDDYGPESRGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTAETGYIQRRLI 60

Query: 1093 QVTANTAIYYDPDPQNTV 1110
            +   +  + YD    N++
Sbjct: 61   KAMESVMVNYDGTVXNSI 78



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 41/50 (82%), Gaps = 3/50 (6%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 819
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHL
Sbjct: 556 ICEIFAVLGIEAVRKAIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHL 605



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/35 (74%), Positives = 31/35 (88%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 550
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHL
Sbjct: 571 AIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHL 605


>gi|194460434|gb|ACF71891.1| RNA polymerase II [Eufriesea violascens]
          Length = 238

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/283 (75%), Positives = 226/283 (79%), Gaps = 46/283 (16%)

Query: 95  LKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGI 154
           LKP PLW  KQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEHG L+MGI
Sbjct: 1   LKPXPLWXSKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGI 60

Query: 155 LCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTY 214
           LCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGIGDTIADPQTY
Sbjct: 61  LCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTY 120

Query: 215 LEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDV 274
           LEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                             
Sbjct: 121 LEIQKAIKKAKEDVIEVIQKAHNMELEPTPG----------------------------- 151

Query: 275 IEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAG 334
                            NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKA VV+G
Sbjct: 152 -----------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAXVVSG 194

Query: 335 SKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYG 377
           SKGSNINIS+VIACVGQQNVEGKRIPFGFRK + PHFIKDDYG
Sbjct: 195 SKGSNINISKVIACVGQQNVEGKRIPFGFRKSSXPHFIKDDYG 237



 Score = 72.4 bits (176), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/35 (85%), Positives = 33/35 (94%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYG 1043
            ++VIACVGQQNVEGKRIPFGFRK + PHFIKDDYG
Sbjct: 203  SKVIACVGQQNVEGKRIPFGFRKSSXPHFIKDDYG 237


>gi|83320422|gb|ABC02838.1| RNA polymerase II largest subunit, partial [Batrachochytrium
           dendrobatidis]
          Length = 985

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/410 (54%), Positives = 273/410 (66%), Gaps = 51/410 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           MMN+LM++P WDG +P P ILKP PLWT KQ+ SLI+P  +N+   H+ HPD+E +    
Sbjct: 460 MMNLLMWVPDWDGIIPTPAILKPIPLWTAKQIISLILP-KINLVGFHAAHPDNEKTD--- 515

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            ISPGDTKV++E G LLMGILCK+++G+S+  ++H    ELG +V   F+   Q V+N W
Sbjct: 516 -ISPGDTKVLIEDGELLMGILCKRTVGSSANGIIHTSMNELGPDVTMGFFNGTQRVINYW 574

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G SIGIGDTIAD QT   I   I  AK +V ++IQKA    LE  PG         
Sbjct: 575 LLQNGFSIGIGDTIADRQTMETINDTIAHAKREVNKIIQKAQTDTLEVLPGM-------- 626

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+RQ+FE+ VN+ LN ARD  G
Sbjct: 627 --------------------------------------TIRQSFESLVNQELNRARDNAG 648

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL EYNN+K MVV+GSKGS INISQ+ ACVGQQNVEGKRIPFGF+ RTLPHF +D
Sbjct: 649 KSAEKSLKEYNNVKQMVVSGSKGSFINISQMTACVGQQNVEGKRIPFGFKDRTLPHFTRD 708

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D+ PESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E VM 
Sbjct: 709 DHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMA 768

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            YD TVRN++G ++Q  YGEDG+ G  VE Q + ++++S+  F   YR D
Sbjct: 769 KYDGTVRNALGDIVQFTYGEDGMEGAKVEKQTLRSMSMSNADFVRSYRVD 818



 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF+ RTLPHF +DD+ PESRGFVENSYL GLTP EFFFHAM
Sbjct: 677  SQMTACVGQQNVEGKRIPFGFKDRTLPHFTRDDHSPESRGFVENSYLRGLTPQEFFFHAM 736

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +    YD   +N +
Sbjct: 737  GGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNAL 778



 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 35/168 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VM  YD TVRN++G ++Q  YGEDG+ G  VE Q + ++++S+  F 
Sbjct: 753 GYIQRRLVKALEDVMAKYDGTVRNALGDIVQFTYGEDGMEGAKVEKQTLRSMSMSNADFV 812

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             YR D             D + +L       ++LE  ++D  S     ++         
Sbjct: 813 RSYRVDIL-----------DGVHKLKP-----NKLEYRIIDDMSQNPEAQV--------- 847

Query: 712 MGSGDVISELEKEWEKLCEDREALR-EIFSSGESNV-VLPCNLMEVIF 757
                   + ++E+E+L EDR  LR +IF +  ++   LP NL  +I+
Sbjct: 848 --------KFDEEFEQLAEDRLMLRQQIFPNTSTDKWALPVNLERLIW 887



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 47/59 (79%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+D+LS +A  NATLLFQ L+RSTL T+ V E+Y LS++AF+WL+GEI+ RF QA V
Sbjct: 922  VRGKDELSLEAQYNATLLFQILLRSTLATRRVIEDYHLSTQAFDWLLGEIDARFNQAIV 980



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 32/138 (23%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            ++ + + P QI++PQ N PVMGIVQDTL  +RK +KRD FL +                 
Sbjct: 415  IQGLCMVPLQIVSPQKNAPVMGIVQDTLCGIRKFSKRDTFLKR----------------- 457

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLR-IELDRKRMTDKKLTMEAISEKIN-----AGF 1602
                   +N+   +PD+D    +P +L+ I L     T K++ +  I  KIN     A  
Sbjct: 458  ----DLMMNLLMWVPDWDGIIPTPAILKPIPL----WTAKQI-ISLILPKINLVGFHAAH 508

Query: 1603 GDDLNTPLSPTDKKLTME 1620
             D+  T +SP D K+ +E
Sbjct: 509  PDNEKTDISPGDTKVLIE 526



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 37/51 (72%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILM 80
           +++  +G+   +ARP+WM++T LPVPP+ VRP++ M G+ R ++ + + LM
Sbjct: 131 QDATDMGLSADWARPEWMIITTLPVPPMPVRPSISMDGAGRGEDDLTHKLM 181


>gi|83320454|gb|ABC02854.1| RNA polymerase II largest subunit, partial [Spiromyces aspiralis]
          Length = 1022

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/410 (53%), Positives = 274/410 (66%), Gaps = 50/410 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           +MNILM +P WDG +P P I+KPKPLWTGKQ++SL IP  +N  R HSTHPD+E +    
Sbjct: 488 VMNILMHIPDWDGTVPTPAIIKPKPLWTGKQIYSLAIPKGINCLRFHSTHPDNETT---- 543

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           ++SPGDT+V++E G LL GI+CKK++  S GSL+H+   E G EV  +F+   Q +V+ W
Sbjct: 544 FVSPGDTRVIIEDGELLAGIICKKTVDASEGSLVHVVMAERGPEVAKKFFNTTQRIVDYW 603

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
            L  G SIGIGDTIAD  T L +   IK+A + V ++I     +D               
Sbjct: 604 FLQNGFSIGIGDTIADDDTMLNVSNIIKEAYDRVDQII-----ID--------------- 643

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                          A+ED +E +           PG T R++FEN+VN+ LN ARD+ G
Sbjct: 644 ---------------AQEDRMEAM-----------PGMTYRESFENRVNKELNRARDQAG 677

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
              ++ L E NN++ MVVAGSKGS IN+SQ+ A VGQQNVEGKRIPFGFR RTLPHF KD
Sbjct: 678 KLVQQRLKESNNVRQMVVAGSKGSYINVSQMTAAVGQQNVEGKRIPFGFRYRTLPHFAKD 737

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DY P S+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKA+E +MV
Sbjct: 738 DYSPASKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKALEDLMV 797

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            YD +VRNS+GQ++Q  YGEDG+    +E Q ++ V  S KKFE  Y  D
Sbjct: 798 QYDGSVRNSLGQIVQFTYGEDGMDSTHLEGQSVNLVRYSDKKFESTYFVD 847



 Score =  149 bits (376), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/130 (57%), Positives = 91/130 (70%), Gaps = 1/130 (0%)

Query: 982  KLVAENYRLSSEAFEWLV-GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 1040
            KLV +  + S+   + +V G   +    +Q+ A VGQQNVEGKRIPFGFR RTLPHF KD
Sbjct: 678  KLVQQRLKESNNVRQMVVAGSKGSYINVSQMTAAVGQQNVEGKRIPFGFRYRTLPHFAKD 737

Query: 1041 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAI 1100
            DY P S+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAET  +   L +   +  +
Sbjct: 738  DYSPASKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKALEDLMV 797

Query: 1101 YYDPDPQNTV 1110
             YD   +N++
Sbjct: 798  QYDGSVRNSL 807



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 85/166 (51%), Gaps = 34/166 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKA+E +MV YD +VRNS+GQ++Q  YGEDG+    +E Q ++ V  S KKFE
Sbjct: 782 GYIQRRLIKALEDLMVQYDGSVRNSLGQIVQFTYGEDGMDSTHLEGQSVNLVRYSDKKFE 841

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             Y  D  +  +               SG +           FS           VL+ +
Sbjct: 842 STYFVDVMDSEK------------SFPSGTL----------EFS-----------VLKNV 868

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVI 756
            G+ +V   L+ E+E+L EDR  LR+ I   GE+   +P NL  +I
Sbjct: 869 EGNDEVQRVLDDEYEQLKEDRHILRKFIARDGEARRPMPVNLPRLI 914



 Score = 67.0 bits (162), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 42/57 (73%)

Query: 955  GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            G D L+++A +NATLLFQ  +RST  +K V + Y L+S A +W++GEIE RF++A V
Sbjct: 952  GNDSLTREAQQNATLLFQIYLRSTFPSKRVLQEYHLNSNALDWIIGEIETRFKKAIV 1008



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 29/137 (21%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            ++ I + PRQII+PQ N PVMGIVQDTL A+RK T+RD F+ K                 
Sbjct: 443  IKEICMVPRQIISPQANSPVMGIVQDTLCAIRKFTRRDNFMAK----------------- 485

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKIN-----AGFG 1603
                   +N+   +PD+D T  +P +++    +   T K++   AI + IN     +   
Sbjct: 486  ----DLVMNILMHIPDWDGTVPTPAIIK---PKPLWTGKQIYSLAIPKGINCLRFHSTHP 538

Query: 1604 DDLNTPLSPTDKKLTME 1620
            D+  T +SP D ++ +E
Sbjct: 539  DNETTFVSPGDTRVIIE 555



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 38/46 (82%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
           E++  +G+DP++ARP+WM++TV+PVPP++VRP++ M    ++++ +
Sbjct: 159 EDAYAMGLDPQYARPEWMIMTVMPVPPMAVRPSIQMDAVRQSEDDL 204


>gi|120561221|gb|ABM26996.1| RNA polymerase II largest subunit, partial [Funneliformis mosseae]
          Length = 1054

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/412 (55%), Positives = 272/412 (66%), Gaps = 51/412 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTR-THSTHPDDED 129
           +++ +MNILM++  WDGK+P PCILKP PLWTGKQ+ S+IIP  +N     HSTHPD E+
Sbjct: 493 SKDLVMNILMWVKDWDGKIPIPCILKPIPLWTGKQILSMIIPKGINSXNLRHSTHPDGEN 552

Query: 130 SGPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQT 189
           +     +SPGDTKV++E G LL GI+CKK++GT+   L+H+   ELG      F    Q 
Sbjct: 553 TD----MSPGDTKVLIEDGELLCGIVCKKTVGTAQQGLIHVIMQELGPNRAKDFLNGCQA 608

Query: 190 VVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIG 249
           VVN WLL  G                                               SIG
Sbjct: 609 VVNYWLLQNGF----------------------------------------------SIG 622

Query: 250 IGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDA 309
           IGDTIAD  T   I   I  AKE V EVI  A    LE  PG T+R++FENQVN+ LN A
Sbjct: 623 IGDTIADKDTMDSITQTINNAKERVKEVILSAQQNKLECQPGMTIRESFENQVNKELNTA 682

Query: 310 RDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           RD  G SA+KSL+E NN+K MV+AGSKGS INISQ+ ACVGQQNVEGKRIP+GF+ RTLP
Sbjct: 683 RDSAGRSAEKSLSEDNNVKQMVIAGSKGSFINISQMTACVGQQNVEGKRIPYGFKFRTLP 742

Query: 370 HFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 429
           HF KDD+ PESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+
Sbjct: 743 HFTKDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAL 802

Query: 430 ESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKY 481
           E VMV YD TVRNS+G ++Q  YGEDG+    VE Q ID++ +S+  F+ KY
Sbjct: 803 EDVMVKYDGTVRNSLGDILQFCYGEDGMDACYVESQNIDSLPISNDTFDKKY 854



 Score =  150 bits (378), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF+ RTLPHF KDD+ PESRGFVENSYL GLTP EFFFHAM
Sbjct: 716  SQMTACVGQQNVEGKRIPYGFKFRTLPHFTKDDHSPESRGFVENSYLRGLTPQEFFFHAM 775

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 776  GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSL 817



 Score = 78.6 bits (192), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 47/63 (74%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD TVRNS+G ++Q  YGEDG+    VE Q ID++ +S+  F+
Sbjct: 792 GYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGEDGMDACYVESQNIDSLPISNDTFD 851

Query: 652 DKY 654
            KY
Sbjct: 852 KKY 854



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 36/43 (83%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            ++ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL K
Sbjct: 452  IKEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFLSK 494



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 45/59 (76%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+D++S +A  NATLLF+ L+RS L +K V + + L+ +A +W++GEIE+RF+++ V
Sbjct: 976  VKGKDRISVEAQSNATLLFKILIRSWLASKRVIDEFHLNQQALKWILGEIESRFRRSLV 1034


>gi|295873184|gb|ADG48674.1| CG1554 [Drosophila yakuba]
 gi|295873186|gb|ADG48675.1| CG1554 [Drosophila yakuba]
 gi|295873188|gb|ADG48676.1| CG1554 [Drosophila yakuba]
 gi|295873190|gb|ADG48677.1| CG1554 [Drosophila yakuba]
 gi|295873192|gb|ADG48678.1| CG1554 [Drosophila yakuba]
 gi|295873194|gb|ADG48679.1| CG1554 [Drosophila yakuba]
 gi|295873196|gb|ADG48680.1| CG1554 [Drosophila yakuba]
 gi|295873198|gb|ADG48681.1| CG1554 [Drosophila yakuba]
 gi|295873200|gb|ADG48682.1| CG1554 [Drosophila yakuba]
 gi|295873202|gb|ADG48683.1| CG1554 [Drosophila yakuba]
 gi|295873204|gb|ADG48684.1| CG1554 [Drosophila yakuba]
 gi|295873206|gb|ADG48685.1| CG1554 [Drosophila yakuba]
 gi|295873208|gb|ADG48686.1| CG1554 [Drosophila yakuba]
 gi|295873210|gb|ADG48687.1| CG1554 [Drosophila yakuba]
 gi|295873212|gb|ADG48688.1| CG1554 [Drosophila yakuba]
 gi|295873214|gb|ADG48689.1| CG1554 [Drosophila santomea]
 gi|295873216|gb|ADG48690.1| CG1554 [Drosophila santomea]
 gi|295873218|gb|ADG48691.1| CG1554 [Drosophila santomea]
 gi|295873220|gb|ADG48692.1| CG1554 [Drosophila santomea]
 gi|295873222|gb|ADG48693.1| CG1554 [Drosophila santomea]
 gi|295873224|gb|ADG48694.1| CG1554 [Drosophila santomea]
 gi|295873226|gb|ADG48695.1| CG1554 [Drosophila santomea]
 gi|295873228|gb|ADG48696.1| CG1554 [Drosophila santomea]
 gi|295873230|gb|ADG48697.1| CG1554 [Drosophila santomea]
 gi|295873232|gb|ADG48698.1| CG1554 [Drosophila santomea]
 gi|295873234|gb|ADG48699.1| CG1554 [Drosophila santomea]
 gi|295873236|gb|ADG48700.1| CG1554 [Drosophila santomea]
 gi|295873238|gb|ADG48701.1| CG1554 [Drosophila santomea]
 gi|295873240|gb|ADG48702.1| CG1554 [Drosophila santomea]
 gi|295873242|gb|ADG48703.1| CG1554 [Drosophila santomea]
          Length = 348

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/354 (64%), Positives = 260/354 (73%), Gaps = 51/354 (14%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 18   VTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQAN 77

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 78   PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPR--LKEIINISKKPKA---- 131

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                     PS   F   G        A + AE   NVL       L +VTANTAIYYDP
Sbjct: 132  ---------PSLTVFLTGG--------AARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 174

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GF
Sbjct: 175  DPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGF 234

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            G+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ
Sbjct: 235  GEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQ 294

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVD 1278
            GIEAIGKVYMHLPQTDSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVD
Sbjct: 295  GIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVD 348



 Score =  221 bits (562), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 161  LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 220

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 221  LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 252

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 253  RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 284


>gi|262303443|gb|ACY44314.1| RNA polymerase largest subunit [Euperipatoides rowelli]
          Length = 654

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/298 (69%), Positives = 236/298 (79%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +E+MMN+LM+LP WDGK+PQP ILKPKPLWTGKQ+FSL+IPGNVN+ RTHSTHPD+ED G
Sbjct: 17  KEEMMNLLMWLPSWDGKIPQPSILKPKPLWTGKQIFSLVIPGNVNIIRTHSTHPDNEDEG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++EHG L+ GILCKK+LGTSSGSL+HI  LELGHE  G+ YGNIQTVV
Sbjct: 77  PYKWISPGDTKVLIEHGDLISGILCKKTLGTSSGSLVHIVMLELGHETAGQLYGNIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL+EGH+IGIGDTIADPQTY++IQ +IKKAK+DVIEVI+KAHN +LEPTPG      
Sbjct: 137 NNWLLIEGHTIGIGDTIADPQTYIDIQESIKKAKQDVIEVIEKAHNDELEPTPG------ 190

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 191 ----------------------------------------NTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTGGSA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFR RTLP
Sbjct: 211 KTGGSAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLP 268



 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/83 (95%), Positives = 81/83 (97%)

Query: 1091 LFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1150
            L +VTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLR+ELDRKRMTDKK
Sbjct: 572  LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRVELDRKRMTDKK 631

Query: 1151 LTMEAISEKINAGFGDDLNCIFN 1173
            LTMEAISEKINAGFGDDLNCIFN
Sbjct: 632  LTMEAISEKINAGFGDDLNCIFN 654



 Score =  164 bits (414), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 76/79 (96%), Positives = 77/79 (97%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLR+ELDRKRMTDKK
Sbjct: 572  LRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRVELDRKRMTDKK 631

Query: 1589 LTMEAISEKINAGFGDDLN 1607
            LTMEAISEKINAGFGDDLN
Sbjct: 632  LTMEAISEKINAGFGDDLN 650



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 29/36 (80%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            G   ++   +QVIACVGQQNVEGKRIPFGFR RTLP
Sbjct: 233  GAKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLP 268


>gi|356605954|gb|AET25008.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 8
            KK-2011]
          Length = 604

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/412 (55%), Positives = 290/412 (70%), Gaps = 42/412 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D +SKQA  NATLL   L+RSTLCTK +  + +L++EAF+WL+GEIE+RF QA  I
Sbjct: 212  VCGNDDISKQAQYNATLLMNILLRSTLCTKKMCTSSKLNTEAFDWLLGEIESRFMQA--I 269

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
            A  G+       +      ++L         P ++  +   + AG++           +E
Sbjct: 270  AQPGE-------MVGALAAQSLGE-------PATQMTLNTFHYAGVSAKNVTLGVPRLKE 315

Query: 1073 GLIDTAVKTAETVNVLVFLF-----------------------QVTANTAIYYDPDPQNT 1109
              I    K  +T ++ VFL                        +VTANTAIYYDPDP+NT
Sbjct: 316  --IINVSKQLKTPSLTVFLTGAAAKDAEKAKDVLCKLEHTTLKKVTANTAIYYDPDPKNT 373

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            VI ED+E+V+++YEMPDFD TR SPWLLRIELDRKRMTDKKLTME I+++I+AGFG D++
Sbjct: 374  VIGEDEEWVSIFYEMPDFDTTRTSPWLLRIELDRKRMTDKKLTMEMIADRIHAGFGQDVH 433

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV R+RI   DD   + +E+ VDKMEDD+FLRCI ANMLSD+TLQGI AI
Sbjct: 434  TIYTDDNAEKLVFRLRIA-GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAI 492

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYM+ P TD KKRI+IT+ G FK+I +W+LETDGT+L++VLSER +DPVRT SNDICE
Sbjct: 493  SKVYMNQPNTDDKKRIVITDEGGFKSITEWILETDGTALLRVLSERQIDPVRTSSNDICE 552

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 1341
            IF+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 553  IFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITR 604



 Score =  186 bits (471), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/117 (75%), Positives = 103/117 (88%)

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV
Sbjct: 1   KDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 60

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           MV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++K FE  +R D ++++
Sbjct: 61  MVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNNKVFERDFRTDLTDDK 117



 Score =  176 bits (446), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 89/151 (58%), Positives = 107/151 (70%), Gaps = 29/151 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+NTVI ED+E+V+++YEMPDFD TR SPWLLRIELDRKRMTDKK
Sbjct: 355  LKKVTANTAIYYDPDPKNTVIGEDEEWVSIFYEMPDFDTTRTSPWLLRIELDRKRMTDKK 414

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+AGFG D++T                            I+ DDNAEKLV 
Sbjct: 415  LTMEMIADRIHAGFGQDVHT----------------------------IYTDDNAEKLVF 446

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCI 1679
            R+RI   DD   + +E+ VDKMEDD+FLRCI
Sbjct: 447  RLRIA-GDDKAAEGQEEQVDKMEDDVFLRCI 476



 Score =  129 bits (325), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 100/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++K FE
Sbjct: 47  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNNKVFE 106

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++++ +R  + ++V+REL  S + I ++E                        
Sbjct: 107 RDFRTDLTDDKFIRNAYTDEVIRELQESSESIEKIE------------------------ 142

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +++  Q+
Sbjct: 143 -----------SEWAQLSEDRRLLRKIFPKGDAKIVLPCNLQRLMWNAQK 181



 Score =  104 bits (260), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 57/72 (79%)

Query: 1039 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANT 1098
            KDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET  +   L +   + 
Sbjct: 1    KDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 60

Query: 1099 AIYYDPDPQNTV 1110
             + YD   +N++
Sbjct: 61   MVNYDGTVRNSL 72



 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 46/55 (83%), Gaps = 3/55 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 824
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 550 ICEIFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITR 604



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/40 (77%), Positives = 36/40 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 555
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 565 AIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITR 604


>gi|328772047|gb|EGF82086.1| hypothetical protein BATDEDRAFT_86817 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1797

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/410 (54%), Positives = 273/410 (66%), Gaps = 51/410 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           MMN+LM++P WDG +P P ILKP PLWT KQ+ SLI+P  +N+   H+ HPD+E +    
Sbjct: 557 MMNLLMWVPDWDGIIPTPAILKPIPLWTAKQIISLILP-KINLVGFHAAHPDNEKTD--- 612

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            ISPGDTKV++E G LLMGILCK+++G+S+  ++H    ELG +V   F+   Q V+N W
Sbjct: 613 -ISPGDTKVLIEDGELLMGILCKRTVGSSANGIIHTSMNELGPDVTMGFFNGTQRVINYW 671

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G SIGIGDTIAD QT   I   I  AK +V ++IQKA    LE  PG         
Sbjct: 672 LLQNGFSIGIGDTIADRQTMETINDTIAHAKREVNKIIQKAQTDTLEVLPGM-------- 723

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+RQ+FE+ VN+ LN ARD  G
Sbjct: 724 --------------------------------------TIRQSFESLVNQELNRARDNAG 745

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL EYNN+K MVV+GSKGS INISQ+ ACVGQQNVEGKRIPFGF+ RTLPHF +D
Sbjct: 746 KSAEKSLKEYNNVKQMVVSGSKGSFINISQMTACVGQQNVEGKRIPFGFKDRTLPHFTRD 805

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D+ PESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E VM 
Sbjct: 806 DHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMA 865

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            YD TVRN++G ++Q  YGEDG+ G  VE Q + ++++S+  F   YR D
Sbjct: 866 KYDGTVRNALGDIVQFTYGEDGMEGAKVEKQTLRSMSMSNADFVRSYRVD 915



 Score =  337 bits (864), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 200/477 (41%), Positives = 289/477 (60%), Gaps = 54/477 (11%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D+LS +A  NATLLFQ L+RSTL T+ V E+Y LS++AF+WL+GEI+ RF QA   
Sbjct: 1019 VRGKDELSLEAQYNATLLFQILLRSTLATRRVIEDYHLSTQAFDWLLGEIDARFNQAIVH 1078

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  +  Q+                 V  K +  G  R + + +  K+   P    +
Sbjct: 1079 PGEMVGTIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAKNIKTPRLEIY 1138

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            ++  Y   +                 + A K   T+     L ++TA+T I+YDPDP N+
Sbjct: 1139 LDPEYRRSM-----------------EMAKKIHSTIEHTT-LRKLTASTEIWYDPDPLNS 1180

Query: 1110 VIPEDQEFVNVYYEMPDF--DPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
            V  +D+E + +Y  + D   D + +SPW+LRI L+ +R  DK +TM+AI  ++   FG D
Sbjct: 1181 VNEQDREIMEIY-AITDAGEDLSNVSPWVLRIHLNFQRKIDKGMTMDAICAELMQPFGGD 1239

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIE 1227
            L C  +DDNA++L++  RI+N D   M       D++E+D FLR IE N+L+D+TL GI+
Sbjct: 1240 LKCWHSDDNAQELIILARIVNDDKGDMD----MDDRLEEDAFLRRIEHNILNDITLCGIK 1295

Query: 1228 AIGKVYMHLPQTDSKKRIIITESGEFKA-IADWLLETDGTSLMKVLSERDVDPVRTFSND 1286
             I +V++        K   + ESG  +    ++ LETDGT+L++VL+   VD VRT+SN 
Sbjct: 1296 NISRVFI-----SESKYTSVDESGVIRPDNPEYFLETDGTNLIQVLAHHGVDAVRTYSNF 1350

Query: 1287 ICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1346
             CEI  VLGIEA R ++ KE   V++F G YVNYRHLALLCD+MT +G +MAI+RHGINR
Sbjct: 1351 ACEIMDVLGIEATRAAILKETRKVIEFDGSYVNYRHLALLCDIMTQRGSIMAISRHGINR 1410

Query: 1347 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1403
             D GAL R SFEETVD+L++AA   E D  +GVSEN+++GQL  +GTG F +LLD +
Sbjct: 1411 TDAGALARASFEETVDLLLEAAGLGELDDCKGVSENVMLGQLAPLGTGEFGVLLDED 1467



 Score =  151 bits (381), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/199 (44%), Positives = 117/199 (58%), Gaps = 8/199 (4%)

Query: 772  FLCKIIFVLSV---RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
            F C+I+ VL +   R ++ KE   V++F G YVNYRHLALLCD+MT +G +MAI+RHGIN
Sbjct: 1350 FACEIMDVLGIEATRAAILKETRKVIEFDGSYVNYRHLALLCDIMTQRGSIMAISRHGIN 1409

Query: 829  RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
            R D GAL R SFEETVD+L++AA   E D  +GVSEN+++GQL  +GTG F +LLD +  
Sbjct: 1410 RTDAGALARASFEETVDLLLEAAGLGELDDCKGVSENVMLGQLAPLGTGEFGVLLDEDLL 1469

Query: 889  KDGIEIPLATG-MMGGPAGMFFGSAATPSS-MSPQMTPWAQSTPAYNALMSPGAAMTPGG 946
               +  P+    MM  P     G   + S  MSP  TP+   +P+       G     G 
Sbjct: 1470 ---LHAPVRPDFMMRAPHAALDGGLGSMSGFMSPAHTPYIDRSPSPIPFSPSGGYSPVGQ 1526

Query: 947  PGFSPSVAGEDQLSKQANE 965
              FSP  AG+  L    N+
Sbjct: 1527 VAFSPVGAGKGWLGVAGNK 1545



 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF+ RTLPHF +DD+ PESRGFVENSYL GLTP EFFFHAM
Sbjct: 774  SQMTACVGQQNVEGKRIPFGFKDRTLPHFTRDDHSPESRGFVENSYLRGLTPQEFFFHAM 833

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +    YD   +N +
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNAL 875



 Score =  104 bits (259), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 72/116 (62%), Gaps = 18/116 (15%)

Query: 515  TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
             ++ KE   V++F G YVNYRHLALLCD+MT +G +MAI+RHGINR D GAL R SFEET
Sbjct: 1365 AAILKETRKVIEFDGSYVNYRHLALLCDIMTQRGSIMAISRHGINRTDAGALARASFEET 1424

Query: 575  VDVLMDAAAHAEADPMRGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
            VD+L++AA   E D  +G          E+VM          +GQL  L  GE G+
Sbjct: 1425 VDLLLEAAGLGELDDCKG--------VSENVM----------LGQLAPLGTGEFGV 1462



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 84/154 (54%), Gaps = 35/154 (22%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDF--DPTRISPWLLRIELDRKRMTD 1586
            L K+TA+T I+YDPDP N+V  +D+E + +Y  + D   D + +SPW+LRI L+ +R  D
Sbjct: 1162 LRKLTASTEIWYDPDPLNSVNEQDREIMEIY-AITDAGEDLSNVSPWVLRIHLNFQRKID 1220

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            K +TM+AI  ++           + P                 FG DL C  +DDNA++L
Sbjct: 1221 KGMTMDAICAEL-----------MQP-----------------FGGDLKCWHSDDNAQEL 1252

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            ++  RI+N D   M       D++E+D FLR IE
Sbjct: 1253 IILARIVNDDKGDMD----MDDRLEEDAFLRRIE 1282



 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 35/168 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VM  YD TVRN++G ++Q  YGEDG+ G  VE Q + ++++S+  F 
Sbjct: 850 GYIQRRLVKALEDVMAKYDGTVRNALGDIVQFTYGEDGMEGAKVEKQTLRSMSMSNADFV 909

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             YR D         I   D + +L       ++LE  ++D  S     ++         
Sbjct: 910 RSYRVD---------IL--DGVHKLKP-----NKLEYRIIDDMSQNPEAQV--------- 944

Query: 712 MGSGDVISELEKEWEKLCEDREALR-EIFSSGESNV-VLPCNLMEVIF 757
                   + ++E+E+L EDR  LR +IF +  ++   LP NL  +I+
Sbjct: 945 --------KFDEEFEQLAEDRLMLRQQIFPNTSTDKWALPVNLERLIW 984



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 32/138 (23%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            ++ + + P QI++PQ N PVMGIVQDTL  +RK +KRD FL +                 
Sbjct: 512  IQGLCMVPLQIVSPQKNAPVMGIVQDTLCGIRKFSKRDTFLKR----------------- 554

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLR-IELDRKRMTDKKLTMEAISEKIN-----AGF 1602
                   +N+   +PD+D    +P +L+ I L     T K++ +  I  KIN     A  
Sbjct: 555  ----DLMMNLLMWVPDWDGIIPTPAILKPIPL----WTAKQI-ISLILPKINLVGFHAAH 605

Query: 1603 GDDLNTPLSPTDKKLTME 1620
             D+  T +SP D K+ +E
Sbjct: 606  PDNEKTDISPGDTKVLIE 623



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 37/51 (72%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILM 80
           +++  +G+   +ARP+WM++T LPVPP+ VRP++ M G+ R ++ + + LM
Sbjct: 228 QDATDMGLSADWARPEWMIITTLPVPPMPVRPSISMDGAGRGEDDLTHKLM 278


>gi|222089656|gb|ACM42387.1| RNA polymerase II [Lepidotrigona ventralis]
          Length = 237

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/283 (75%), Positives = 226/283 (79%), Gaps = 46/283 (16%)

Query: 87  GKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVE 146
           GKMPQP IL PKP WTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VE
Sbjct: 1   GKMPQPXILXPKPXWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVE 60

Query: 147 HGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGD 206
           HG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGIGD
Sbjct: 61  HGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGD 120

Query: 207 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMA 266
           TIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG                     
Sbjct: 121 TIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG--------------------- 159

Query: 267 IKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNN 326
                                    NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNN
Sbjct: 160 -------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNN 194

Query: 327 LKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           LKAMVV+GSKGSNI ISQVIACVGQQNV  KRIPFGFRKRTLP
Sbjct: 195 LKAMVVSGSKGSNIXISQVIACVGQQNVXXKRIPFGFRKRTLP 237



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/27 (88%), Positives = 25/27 (92%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            +QVIACVGQQNV  KRIPFGFRKRTLP
Sbjct: 211  SQVIACVGQQNVXXKRIPFGFRKRTLP 237


>gi|33326209|gb|AAQ08514.1| RNA polymerase II largest subunit [Welwitschia mirabilis]
          Length = 1013

 Score =  435 bits (1118), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/418 (53%), Positives = 276/418 (66%), Gaps = 52/418 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   ++GK+P P ILKP+P+WTGKQVF+LIIP  +N+ R  + H + E   P  
Sbjct: 481 FMNILMWWEEFEGKIPNPAILKPRPIWTGKQVFNLIIPKQINLIRYSAWHNESEKGFP-- 538

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
             +PGDT V +E G +L G LCKK+LG+SSGSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 539 --TPGDTVVRIEKGEVLSGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 596

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL +G SIGIGDTIAD  T  +I   I  AK  V ++I+KA    LE  PG         
Sbjct: 597 LLQQGFSIGIGDTIADAATMEKINETIANAKIKVQQLIEKAQEKKLEAEPGR-------- 648

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FENQVN++LN ARD  G
Sbjct: 649 --------------------------------------TMMESFENQVNQVLNKARDDAG 670

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KD
Sbjct: 671 NSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKD 730

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 731 DKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 790

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNERP 490
            YD TVRNS+G + Q  YGEDG+    +E Q++D++ +  ++F+D  KY  D  N  P
Sbjct: 791 KYDGTVRNSLGDVTQFLYGEDGMDAVWIESQKLDSLKMKKREFDDVYKYELDQENWNP 848



 Score =  151 bits (381), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/176 (47%), Positives = 101/176 (57%), Gaps = 31/176 (17%)

Query: 966  NATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQ----------------- 1008
            NA +  Q L+      KL AE  R   E+FE  V ++ N+ +                  
Sbjct: 625  NAKIKVQQLIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLK 684

Query: 1009 --------------AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY 1054
                          +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDD GPESRGFVENSY
Sbjct: 685  AMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSY 744

Query: 1055 LAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            L GLTP EFFFHAMGGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 745  LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 800



 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 51/70 (72%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G + Q  YGEDG+    +E Q++D++ +  ++F+
Sbjct: 775 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVTQFLYGEDGMDAVWIESQKLDSLKMKKREFD 834

Query: 652 DKYRFDPSNE 661
           D Y+++   E
Sbjct: 835 DVYKYELDQE 844



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G D LS +A +NATL F  L+RST  +K V + Y L+ EAF+W++GEIE RF Q+   
Sbjct: 941  VPGNDPLSIEAQKNATLFFNILLRSTFASKRVLKEYHLTKEAFDWVIGEIETRFLQSLVS 1000

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 1001 PGEMIGCVAAQSI 1013



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TK D F +K V  N  ++++
Sbjct: 436  VMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKVTKGDTFTEKDVFMNILMWWE 489



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 40/53 (75%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           EE  +LG +PK+ARPDWM++ VLP+PP  VRP+V+M+ + R+++ + + L  +
Sbjct: 149 EECQMLGFNPKYARPDWMILQVLPIPPPPVRPSVMMNSTTRSEDDLTHQLAMI 201


>gi|356605940|gb|AET25001.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 12
            KK-2010]
          Length = 604

 Score =  435 bits (1118), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/411 (55%), Positives = 290/411 (70%), Gaps = 42/411 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D +SKQA  NATLL   L+RSTLCTK +  + +L++EAF+WL+GEIE+RF QA  I
Sbjct: 213  VCGNDDISKQAQYNATLLMNILLRSTLCTKKMCTSSKLNTEAFDWLLGEIESRFMQA--I 270

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
            A  G+       +      ++L         P ++  +   + AG++           +E
Sbjct: 271  AQPGE-------MVGALAAQSLGE-------PATQMTLNTFHYAGVSAKNVTLGVPRLKE 316

Query: 1073 GLIDTAVKTAETVNVLVFLF-----------------------QVTANTAIYYDPDPQNT 1109
              I    K  +T ++ VFL                        +VTANTAIYYDPDP+NT
Sbjct: 317  --IINVSKQLKTPSLTVFLTGAAAKDAEKAKDVLCKLEHTTLKKVTANTAIYYDPDPKNT 374

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            VI ED+E+V+++YEMPDFD TR SPWLLRIELDRKRMTDKKLTME I+++I++GFG D++
Sbjct: 375  VIGEDEEWVSIFYEMPDFDTTRTSPWLLRIELDRKRMTDKKLTMEMIADRIHSGFGQDVH 434

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV R+RI   +D   + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI
Sbjct: 435  TIYTDDNAEKLVFRLRIA-GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAI 493

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYM+ P TD KKRIIITE G FK+I +W+LETDGT+L++VLSER +DPVRT SNDICE
Sbjct: 494  SKVYMNQPNTDDKKRIIITEEGGFKSITEWILETDGTALLRVLSERQIDPVRTSSNDICE 553

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAIT 1340
            IF+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAIT
Sbjct: 554  IFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAIT 604



 Score =  183 bits (465), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 87/117 (74%), Positives = 102/117 (87%)

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           +DDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV
Sbjct: 2   QDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 61

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           MV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE  +R D +++R
Sbjct: 62  MVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNNAVFERDFRTDLTDDR 118



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/152 (57%), Positives = 108/152 (71%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+NTVI ED+E+V+++YEMPDFD TR SPWLLRIELDRKRMTDKK
Sbjct: 356  LKKVTANTAIYYDPDPKNTVIGEDEEWVSIFYEMPDFDTTRTSPWLLRIELDRKRMTDKK 415

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I++GFG D++T                            I+ DDNAEKLV 
Sbjct: 416  LTMEMIADRIHSGFGQDVHT----------------------------IYTDDNAEKLVF 447

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   +D   + +E+ VDKMEDD+FLRCIE
Sbjct: 448  RLRIA-GEDKAAEGQEEQVDKMEDDVFLRCIE 478



 Score =  130 bits (327), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 98/170 (57%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 48  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNNAVFE 107

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D +++R L   + EDV+REL  S + I ++E                        
Sbjct: 108 RDFRTDLTDDRFLENSYTEDVIRELQESSEAIEKIE------------------------ 143

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +++  Q+
Sbjct: 144 -----------SEWAQLSEDRRLLRKIFPKGDAKIVLPCNLQRLMWNAQK 182



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/72 (66%), Positives = 57/72 (79%)

Query: 1039 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANT 1098
            +DDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET  +   L +   + 
Sbjct: 2    QDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 61

Query: 1099 AIYYDPDPQNTV 1110
             + YD   +N++
Sbjct: 62   MVNYDGTVRNSL 73



 Score = 78.6 bits (192), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 45/54 (83%), Gaps = 3/54 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAIT 823
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAIT
Sbjct: 551 ICEIFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAIT 604



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/39 (76%), Positives = 35/39 (89%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAIT 554
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAIT
Sbjct: 566 AIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAIT 604


>gi|170652071|gb|ACB21812.1| RNA polymerase II [Melipona beecheii]
 gi|170652105|gb|ACB21829.1| RNA polymerase II [Melipona compressipes interrupta]
          Length = 229

 Score =  434 bits (1117), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/275 (77%), Positives = 224/275 (81%), Gaps = 46/275 (16%)

Query: 88  KMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEH 147
           KMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEH
Sbjct: 1   KMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEH 60

Query: 148 GSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDT 207
           G L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGIGDT
Sbjct: 61  GELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDT 120

Query: 208 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAI 267
           IADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG                      
Sbjct: 121 IADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG---------------------- 158

Query: 268 KKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNL 327
                                   NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNL
Sbjct: 159 ------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNL 194

Query: 328 KAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFG 362
           KAMVV+GSKGSNINISQVIACVGQQNVEGKRIPFG
Sbjct: 195 KAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFG 229



 Score = 45.1 bits (105), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFG 1028
            +QVIACVGQQNVEGKRIPFG
Sbjct: 210  SQVIACVGQQNVEGKRIPFG 229


>gi|120561205|gb|ABM26988.1| RNA polymerase II largest subunit, partial [Neolecta vitellina]
          Length = 997

 Score =  434 bits (1117), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/413 (53%), Positives = 276/413 (66%), Gaps = 55/413 (13%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           Q+ +MNILM++P WDG +P P I+KPKPLW+GKQ+ S++IP  +N+TR      +D+   
Sbjct: 463 QDMVMNILMWVPEWDGTVPMPAIIKPKPLWSGKQILSMVIPRGINITRND----EDQTHN 518

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           P     P D  + +E+G ++ G++ KK++G++ G L+HI   E G EVC  F+  +Q VV
Sbjct: 519 P-----PDDRGMKIENGEIIYGVVDKKTVGSTPGGLIHIIMQEKGPEVCKGFFNGVQLVV 573

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N W L                                       HN       G SIGIG
Sbjct: 574 NYWFL---------------------------------------HN-------GFSIGIG 587

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD      IQ  I +A+  VIEV +KA N  LEP+PG TLR+TFE+QV + LN+ARD
Sbjct: 588 DTIADAHIMDIIQEKITEARAKVIEVTRKAQNNTLEPSPGMTLRETFESQVRQALNNARD 647

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           + G SA+K L E NN+K MV AGSKGS INISQ+ ACVGQQ VEG+RI FGF+ RTLPHF
Sbjct: 648 EAGRSAEKGLKESNNVKQMVSAGSKGSFINISQMSACVGQQAVEGQRIAFGFKFRTLPHF 707

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           ++DDY PESRGFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E 
Sbjct: 708 VRDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALED 767

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           VMV YD TVRNS+G ++QL YGEDGL G  VEHQ ++T+ LS + FED+YR D
Sbjct: 768 VMVKYDGTVRNSLGDIVQLAYGEDGLDGAKVEHQFLETLTLSDRNFEDRYRVD 820



 Score =  142 bits (358), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEG+RI FGF+ RTLPHF++DDY PESRGFVENSYL GLTP EFFFHAM
Sbjct: 679  SQMSACVGQQAVEGQRIAFGFKFRTLPHFVRDDYSPESRGFVENSYLRGLTPQEFFFHAM 738

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 739  AGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSL 780



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 91/165 (55%), Gaps = 35/165 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD TVRNS+G ++QL YGEDGL G  VEHQ ++T+ LS + FE
Sbjct: 755 GYIQRRLVKALEDVMVKYDGTVRNSLGDIVQLAYGEDGLDGAKVEHQFLETLTLSDRNFE 814

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           D+YR D                  LM   D    +   ++              +V  ++
Sbjct: 815 DRYRVD------------------LM---DPTRTIPANLL--------------EVGNDI 839

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
            G  ++ + L++EW +L EDR+ LR IF  G++   LP N+  VI
Sbjct: 840 DGDEEMQNYLDEEWMQLVEDRKKLRHIFPDGDNRRALPVNIQRVI 884



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 24/132 (18%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I + PRQI++PQ N+PVMGIVQDTL A+RK TKRD FL               Q+ V
Sbjct: 421  ISEICMVPRQIVSPQGNKPVMGIVQDTLCAIRKFTKRDSFL--------------AQDMV 466

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNT 1608
            +       N+   +P++D T   P +++    +   + K++    I   IN    D+  T
Sbjct: 467  M-------NILMWVPEWDGTVPMPAIIK---PKPLWSGKQILSMVIPRGINITRNDEDQT 516

Query: 1609 PLSPTDKKLTME 1620
               P D+ + +E
Sbjct: 517  HNPPDDRGMKIE 528



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)

Query: 955  GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVIAC 1014
            G D+L+ +A ++AT L Q  +RS L TK V + Y  +  AFEWL+GEIE+RF  A  +A 
Sbjct: 922  GTDKLTTEAQQDATSLSQIHIRSRLATKRVLKEYHFNKIAFEWLLGEIESRF--ASSVAY 979

Query: 1015 VGQ 1017
             G+
Sbjct: 980  PGE 982



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 33/41 (80%)

Query: 35  LGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
           LG+  ++ARP+WM++TVL VPP  VRP++ + GSAR+++ +
Sbjct: 142 LGLSGEYARPEWMIITVLGVPPPPVRPSISVDGSARSEDDL 182


>gi|222089662|gb|ACM42390.1| RNA polymerase II [Melipona grandis]
          Length = 247

 Score =  434 bits (1116), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/276 (76%), Positives = 224/276 (81%), Gaps = 46/276 (16%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQMMNILMFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDG 77

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+
Sbjct: 78  PYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVI 137

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG      
Sbjct: 138 NNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG------ 191

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 192 ----------------------------------------NTLRQTFENQVNRILNDARD 211

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIA 347
           KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIA
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIA 247


>gi|356496595|ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
           [Glycine max]
          Length = 1827

 Score =  434 bits (1116), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/423 (53%), Positives = 277/423 (65%), Gaps = 52/423 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           +++  MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ R  S H + E  
Sbjct: 555 SKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQINLIRYSSWHSESERG 614

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
                I+PGDT V +E G LL G LCKK+LGT SG L+H+ + E+G +   +F G+ Q +
Sbjct: 615 S----ITPGDTMVRIEKGELLTGTLCKKTLGTYSGGLIHVIWEEVGPDAARKFLGHTQWL 670

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN WLL                                    Q A           SIGI
Sbjct: 671 VNYWLL------------------------------------QNAF----------SIGI 684

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIAD  T   I   I  AKE V ++I++AH   LE  PG ++  +FEN+VN+ LN AR
Sbjct: 685 GDTIADASTMETINQTISAAKEKVKQLIREAHEKKLEAEPGRSMMDSFENRVNQTLNRAR 744

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           D  G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPH
Sbjct: 745 DDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPH 804

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F KDD GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME
Sbjct: 805 FTKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAME 864

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNE 488
            +MV YD TVRNS+G +IQ  YGEDG+    +E Q +D++ +   +F+   +Y FD  N 
Sbjct: 865 DIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIEKQMLDSLKMKKTEFDRVFRYEFDDENW 924

Query: 489 RPT 491
           +PT
Sbjct: 925 KPT 927



 Score =  417 bits (1073), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 241/512 (47%), Positives = 316/512 (61%), Gaps = 55/512 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V GED LS++A +NATLLF  L+RST  +K V E YRLS EAFEW+VGEIE+RF Q+   
Sbjct: 1019 VPGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVA 1078

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              ++I CV  Q+                 V  K +  G  R R + +  K    P     
Sbjct: 1079 SGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP----- 1133

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
               S    L P            G      K+ +       L  VT  T ++YDPDP +T
Sbjct: 1134 ---SLSVYLRPDV----------GKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMST 1180

Query: 1110 VIPEDQEFVNVYYEMPDFDPT--RISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
            +I ED +FV  YYEMPD +    +ISPWLLRIEL+R+ M DKKL+M  I+EKIN  F DD
Sbjct: 1181 IIEEDVDFVKSYYEMPDEEVALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDD 1240

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIE 1227
            L CIFNDDNAEKL+LRIRIMN +  K + ++++    EDD+FL+ IE+NML++MTL+GI 
Sbjct: 1241 LTCIFNDDNAEKLILRIRIMNDEAPKGEIQDESA---EDDVFLKKIESNMLTEMTLRGIP 1297

Query: 1228 AIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDI 1287
             I KV++    T  +K     E+  FK   +W+L+T+G +L+ V+   DVD  RT SN +
Sbjct: 1298 DINKVFIK--NTKVQK---FDENQGFKPNEEWMLDTEGVNLLAVMCHEDVDVTRTTSNHL 1352

Query: 1288 CEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 1347
             E+ +VLGIEAVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR 
Sbjct: 1353 IEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRN 1412

Query: 1348 DTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1407
            DTG +MRCSFEETVD+L+DAA +AE D +RGV+ENI++GQL  +GTG   L L+ E  K+
Sbjct: 1413 DTGPMMRCSFEETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGECALYLNDEMLKN 1472

Query: 1408 GIEIPLATGMMGGPAGMFFGSAATPSSIPGPP 1439
             IE+ L + M     G+ FG     S I G P
Sbjct: 1473 AIELQLPSYM----DGLDFGMTPARSPISGTP 1500



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/190 (47%), Positives = 123/190 (64%), Gaps = 19/190 (10%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DT
Sbjct: 1355 VIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1414

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G +MRCSFEETVD+L+DAA +AE D +RGV+ENI++GQL  +GTG   L L+ E  K+ I
Sbjct: 1415 GPMMRCSFEETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAI 1474

Query: 893  EIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTPG------- 945
            E+ L + M     G+ FG       M+P  +P +  TP +  LMSP   ++P        
Sbjct: 1475 ELQLPSYM----DGLDFG-------MTPARSPIS-GTPYHEGLMSPSYLLSPNLRLSPTT 1522

Query: 946  GPGFSPSVAG 955
               FSP V G
Sbjct: 1523 DAQFSPYVGG 1532



 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 80/102 (78%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDD GPESRGFVENSYL GLTP EFFFHAM
Sbjct: 777  SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDLGPESRGFVENSYLRGLTPQEFFFHAM 836

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 837  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 878



 Score =  129 bits (324), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/177 (43%), Positives = 103/177 (58%), Gaps = 34/177 (19%)

Query: 1506 RPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDF 1565
            RP +G  ++   +V+   +    L  VT  T ++YDPDP +T+I ED +FV  YYEMPD 
Sbjct: 1140 RPDVGKTKERAKSVQCALEYTT-LRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDE 1198

Query: 1566 DPT--RISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAIS 1623
            +    +ISPWLLRIEL+R+ M DKKL+                            M  I+
Sbjct: 1199 EVALEKISPWLLRIELNREMMVDKKLS----------------------------MADIA 1230

Query: 1624 EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            EKIN  F DDL CIFNDDNAEKL+LRIRIMN +  K + ++++    EDD+FL+ IE
Sbjct: 1231 EKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEIQDESA---EDDVFLKKIE 1284



 Score =  120 bits (300), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/117 (51%), Positives = 79/117 (67%), Gaps = 8/117 (6%)

Query: 520  EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 579
            E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+
Sbjct: 1371 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1430

Query: 580  DAAAHAEADPMRGYIQRRLIKAM------ESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
            DAA +AE D +RG  +  ++  +      E  +   D  ++N++   +QL    DGL
Sbjct: 1431 DAAVYAETDYLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIE--LQLPSYMDGL 1485



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q +D++ +   +F+
Sbjct: 853 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIEKQMLDSLKMKKTEFD 912

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R++          F+++  +           LE+ + D  + ++ R +F        
Sbjct: 913 RVFRYE----------FDDENWKPTY-------MLEEPVEDLKTIREFRNVF-------- 947

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                     E E +KL  DR  L  EI ++G+S++ LP NL  +I+  Q+
Sbjct: 948 ----------EAEVQKLEADRFQLATEIATTGDSSLFLPVNLKRLIWNAQK 988



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F+ K V  N  ++++
Sbjct: 514  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFISKDVFMNILMWWE 567



 Score = 42.7 bits (99), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 41/53 (77%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+  +LG++PK+ARPDWM++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 227 EDCQLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 279


>gi|120561217|gb|ABM26994.1| RNA polymerase II largest subunit, partial [Mucor hiemalis]
          Length = 1009

 Score =  434 bits (1116), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/414 (53%), Positives = 276/414 (66%), Gaps = 50/414 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           +MNI+M++P WDG +P P ILKPKP+WTGKQ+ S++IP  +N    HSTHPD E +    
Sbjct: 472 VMNIVMWVPSWDGYIPPPAILKPKPMWTGKQIVSMVIPKGINCQTFHSTHPDGEST---- 527

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            ISPGDT+V++E+G L+ GI+CKK++GT+ G L+H    ELG E    F G  Q VVN W
Sbjct: 528 LISPGDTRVIIENGELICGIVCKKTVGTAGGGLIHTIMNELGPEAAKNFLGGTQQVVNYW 587

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G SIGIGDTIAD  +   I   I +AK+ V EVI                     I
Sbjct: 588 LLQNGFSIGIGDTIADKVSMATITNIISQAKQRVQEVI---------------------I 626

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
              Q  LE+Q                         PG TLR++FE +VN+ LN ARD  G
Sbjct: 627 TAQQDKLEVQ-------------------------PGMTLRESFEAKVNQTLNKARDDAG 661

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
             A+ SL E NN+K MV++GSKGS INISQ+ ACVGQQNVEGKRIP+GF+ RTLPHF KD
Sbjct: 662 KMAQNSLKEDNNVKQMVISGSKGSFINISQMSACVGQQNVEGKRIPYGFKFRTLPHFSKD 721

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D+ PESRGFVENSYL GLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E VMV
Sbjct: 722 DHSPESRGFVENSYLRGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMV 781

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
            YD TVRNS+G +I+  YGEDG+   +VE Q+  ++  + ++FE +Y+ D  N+
Sbjct: 782 KYDGTVRNSLGDIIEFCYGEDGMDALSVESQKFFSLKCNQEEFEKRYKIDVMNK 835



 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 82/102 (80%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF+ RTLPHF KDD+ PESRGFVENSYL GLTP+EFFFHAM
Sbjct: 690  SQMSACVGQQNVEGKRIPYGFKFRTLPHFSKDDHSPESRGFVENSYLRGLTPTEFFFHAM 749

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 750  GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSL 791



 Score = 90.5 bits (223), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD TVRNS+G +I+  YGEDG+   +VE Q+  ++  + ++FE
Sbjct: 766 GYIQRRLVKALEDVMVKYDGTVRNSLGDIIEFCYGEDGMDALSVESQKFFSLKCNQEEFE 825

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +Y+ D  N+   +   + +VL+ + G     SE  +  +DH                  
Sbjct: 826 KRYKIDVMNKGFKKGALSYNVLKSIEG-----SETAQAYLDH------------------ 862

Query: 712 MGSGDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVI 756
                       E+ +L EDR  LR  IF +G+    LP NL  +I
Sbjct: 863 ------------EFYQLTEDRNKLRTNIFKNGDDKWPLPVNLTRLI 896



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 40/54 (74%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRF 1006
            V G D++S +  +NATLLF  L+RST   K V E + L+S+AFEW++GEIE+RF
Sbjct: 932  VRGSDKISNETQKNATLLFGILLRSTFSVKRVVEEFHLTSQAFEWILGEIESRF 985



 Score = 60.5 bits (145), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 21/110 (19%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIY------YD 1541
            V  I + P+QI++PQ+N+PVMGIVQDTL  +RK T RD F+ K +  N  ++      Y 
Sbjct: 427  VTEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTLRDCFMTKDLVMNIVMWVPSWDGYI 486

Query: 1542 PDPQ--------------NTVIPEDQEFVNVYYEMPDFDPTRISPWLLRI 1577
            P P               + VIP+       +   PD + T ISP   R+
Sbjct: 487  PPPAILKPKPMWTGKQIVSMVIPKGINCQTFHSTHPDGESTLISPGDTRV 536



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 34/45 (75%)

Query: 35  LGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           +G+  +FARP+WM+ TVLPVPP  VRP++ M G++R ++ + + L
Sbjct: 148 MGLSEEFARPEWMITTVLPVPPPQVRPSIQMDGTSRGEDDLTHKL 192


>gi|120561227|gb|ABM26999.1| RNA polymerase II largest subunit, partial [Catenaria anguillulae]
          Length = 1020

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/410 (54%), Positives = 274/410 (66%), Gaps = 51/410 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           +MN+LM++P WDG MP P I+KPKP+WTGKQ+ SLIIP  VN    HSTHPD    G   
Sbjct: 482 VMNLLMWVPGWDGNMPPPAIVKPKPMWTGKQIMSLIIP-KVNAVTFHSTHPD----GETD 536

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            +SPGDT+V+VE G L+ GI+CKK++GT++G L+H+ ++E G E         QT+VN W
Sbjct: 537 LLSPGDTRVIVEDGELVAGIVCKKTVGTAAGGLVHVSWMEHGPEAAKALLNGCQTIVNYW 596

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL   H+                                           G S+GIGDT+
Sbjct: 597 LL---HT-------------------------------------------GFSVGIGDTV 610

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD +T   I   I  A++ V E+I +A +  LE   G TLR+TFE  VNR LN+A +K G
Sbjct: 611 ADDETTDLINKMIFDARQRVNEIIGEAQSDKLERQTGMTLRETFEANVNRTLNEAVNKAG 670

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
           G+A KS   +NN+K MVVAGSKGSNINISQ+ ACVGQQNVEGKRIPFGF+ R+LPHF+KD
Sbjct: 671 GAAAKSFKVHNNVKHMVVAGSKGSNINISQMSACVGQQNVEGKRIPFGFQYRSLPHFVKD 730

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DY PESRGFVENSYL GL P EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E +MV
Sbjct: 731 DYSPESRGFVENSYLRGLNPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMV 790

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            YD TVRN+ G +IQ  YGEDG+ G  VE Q ++ + +S  KFE ++R D
Sbjct: 791 KYDGTVRNAQGNIIQFLYGEDGMDGTRVESQVLEPLRMSDSKFETRFRVD 840



 Score =  155 bits (392), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/205 (43%), Positives = 116/205 (56%), Gaps = 15/205 (7%)

Query: 954  AGEDQLSKQANENATLLFQCLVRSTLCTKL------VAENYRLSSEAFEWLV-GEIENRF 1006
            A  D+L +Q        F+  V  TL   +       A+++++ +     +V G   +  
Sbjct: 637  AQSDKLERQTGMTLRETFEANVNRTLNEAVNKAGGAAAKSFKVHNNVKHMVVAGSKGSNI 696

Query: 1007 QQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFH 1066
              +Q+ ACVGQQNVEGKRIPFGF+ R+LPHF+KDDY PESRGFVENSYL GL P EFFFH
Sbjct: 697  NISQMSACVGQQNVEGKRIPFGFQYRSLPHFVKDDYSPESRGFVENSYLRGLNPQEFFFH 756

Query: 1067 AMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD 1126
            AMGGREGLIDTAVKTAET  +   L +   +  + YD     TV       +   Y    
Sbjct: 757  AMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVKYD----GTVRNAQGNIIQFLYGEDG 812

Query: 1127 FDPTRISPWLLRIELDRKRMTDKKL 1151
             D TR+   +    L+  RM+D K 
Sbjct: 813  MDGTRVESQV----LEPLRMSDSKF 833



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 85/172 (49%), Gaps = 38/172 (22%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MV YD TVRN+ G +IQ  YGEDG+ G  VE Q ++ + +S  KFE
Sbjct: 775 GYIQRRLVKALEDIMVKYDGTVRNAQGNIIQFLYGEDGMDGTRVESQVLEPLRMSDSKFE 834

Query: 652 DKYRFD---PSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVL 708
            ++R D   P   R LR             S  V   + KE                   
Sbjct: 835 TRFRVDVTEPDTPRGLR-------------SASVEFGIMKE------------------- 862

Query: 709 RELMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQ 760
              + + +V   L+ E+ +L  DR  L+++F  G++   LP NL  +I+  Q
Sbjct: 863 ---IQTAEVQDLLDDEFRQLQVDRAQLQQVFKRGDARWPLPGNLNRIIWNAQ 911



 Score = 67.8 bits (164), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 43/59 (72%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G D+LS++A +NAT+L Q LVRSTL TK V + Y L   AF+++VGEI+ RF  AQV
Sbjct: 943  VPGTDKLSREAQKNATVLMQILVRSTLATKRVLQEYCLDRRAFDYVVGEIKTRFATAQV 1001



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 37/54 (68%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            ++ + + P QI++PQ+N+PVMGIVQDTL  + K T+RD F+D+      + + P
Sbjct: 437  IQQLCMVPLQIVSPQSNKPVMGIVQDTLCGITKFTRRDTFMDRAMVMNLLMWVP 490


>gi|328867419|gb|EGG15801.1| RNA polymerase II largest subunit [Dictyostelium fasciculatum]
          Length = 1701

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/403 (55%), Positives = 267/403 (66%), Gaps = 50/403 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           MMNILM+LP WDGK+P P I KPK LWTGKQ+FSLIIP  +N+TR  STH D E      
Sbjct: 523 MMNILMWLPSWDGKIPPPAIWKPKKLWTGKQIFSLIIP-KINLTRFTSTHNDKEKEKSEM 581

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
                DT V+++ G L+ GILCK+SLG+++GS++H+   E GHE    F    QTVVN+W
Sbjct: 582 ---ASDTVVIIDQGELMSGILCKRSLGSANGSIIHVVQNEHGHEATRCFIDQTQTVVNSW 638

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           L+  G ++GIGDTIAD  T  ++Q AI  AK  V E+I KA +   E  PG S       
Sbjct: 639 LISHGFTVGIGDTIADSATMAKVQNAITSAKTQVKELIIKAQSNQFECQPGKS------- 691

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                  + ++FE +VNR+LN ARD  G
Sbjct: 692 ---------------------------------------MLESFEKEVNRVLNTARDDAG 712

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL E NN+KAMV AGSKGS INISQ++ACVGQQNVEGKRIPFGF+ RTLPHF KD
Sbjct: 713 TSAQKSLQESNNVKAMVNAGSKGSFINISQMMACVGQQNVEGKRIPFGFQNRTLPHFTKD 772

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME V V
Sbjct: 773 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVSV 832

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKF 477
            YD TVRNS+G +IQ  YGEDGL G +VE Q  D++   +  F
Sbjct: 833 RYDATVRNSLGDVIQFAYGEDGLDGCSVETQSFDSLKKDNNDF 875



 Score =  356 bits (914), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 208/516 (40%), Positives = 303/516 (58%), Gaps = 71/516 (13%)

Query: 957  DQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA-----QV 1011
            D+   + ++NAT+LF  L+RST  ++ V + +RL+S+AFEW+ GE+E++F  +     ++
Sbjct: 1003 DKAWNETHQNATMLFAILLRSTFASRRVLDEFRLTSKAFEWVCGEVESKFMTSLANPGEM 1062

Query: 1012 IACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 1071
            +  +  Q++ G+                    P ++  +   + AG++           +
Sbjct: 1063 VGALAAQSI-GE--------------------PATQMTLNTFHYAGVSSKNVTLGVPRLK 1101

Query: 1072 EGLIDTAVKTAETVNVLVFL-----------------------FQVTANTAIYYDPDPQN 1108
            E  I    K  +T ++ ++L                        +VTA T IYYDP+P  
Sbjct: 1102 E--IINVAKNVKTPSLTIYLQPDIARDSEKAKSVQCQLEYTTMARVTAATEIYYDPEPNT 1159

Query: 1109 TVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGD 1166
            TVI ED EFV  Y  +PD   +   +SPWLLR+ELDR+ +TDKKL++  I++ I   F D
Sbjct: 1160 TVIEEDLEFVTRYMMLPDEEINEGALSPWLLRVELDREMVTDKKLSLYEITQCIKKDF-D 1218

Query: 1167 DLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGI 1226
             LNCIF+DDNA+KL++RIR +  +++K    +D      DD FLR +E+ MLS M L GI
Sbjct: 1219 KLNCIFSDDNADKLIIRIRTIMDNENKESANDD------DDTFLRRVESMMLSQMVLCGI 1272

Query: 1227 EAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSND 1286
              I KV+M     +  + +I  ++G +    +W+L+TDG +L++V+S  DVD  RT SND
Sbjct: 1273 PNIKKVFMR----NDDRSMINPDTGAYYTKKEWVLDTDGVNLLEVMSHPDVDFSRTVSND 1328

Query: 1287 ICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1346
            I EI QVLGIEAVR ++ KE+  V+ F G YVNYRHLA+L DVMT +GHLMAITRHGINR
Sbjct: 1329 IVEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAMLADVMTYRGHLMAITRHGINR 1388

Query: 1347 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1406
             ++G LMRCSFEETV++LM+AA  +E D + GV+ENII+GQLP +GTG F++ L+ +  K
Sbjct: 1389 VESGPLMRCSFEETVEILMEAALFSETDNICGVTENIILGQLPPLGTGSFEVYLNQDMIK 1448

Query: 1407 DGIEIPLATGMMGGPAGMFFGSAATPSSIPGPPAWY 1442
            +   I L       P  M      TPS+  G    Y
Sbjct: 1449 NAHSISL-------PEPMAITYPDTPSNTGGQTPSY 1477



 Score =  157 bits (397), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 84/102 (82%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q++ACVGQQNVEGKRIPFGF+ RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 741  SQMMACVGQQNVEGKRIPFGFQNRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 800

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   + ++ YD   +N++
Sbjct: 801  GGREGLIDTAVKTSETGYIQRRLVKAMEDVSVRYDATVRNSL 842



 Score =  156 bits (394), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 117/192 (60%), Gaps = 16/192 (8%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR ++ KE+  V+ F G YVNYRHLA+L DVMT +GHLMAITRHGINR ++
Sbjct: 1332 IIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAMLADVMTYRGHLMAITRHGINRVES 1391

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G LMRCSFEETV++LM+AA  +E D + GV+ENII+GQLP +GTG F++ L+ +  K+  
Sbjct: 1392 GPLMRCSFEETVEILMEAALFSETDNICGVTENIILGQLPPLGTGSFEVYLNQDMIKNAH 1451

Query: 893  EIPLATGMMGGPAGMFFGSAATPSSMSPQM-------TPWAQSTPAYNALMSPGAAMTPG 945
             I L       P  M      TPS+   Q        TP+     ++ A  SP      G
Sbjct: 1452 SISL-------PEPMAITYPDTPSNTGGQTPSYDGGSTPYHHQFSSFEAPFSPFNEAYRG 1504

Query: 946  --GPGFSPSVAG 955
               P +SP+  G
Sbjct: 1505 DFSPSYSPNSPG 1516



 Score =  109 bits (272), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 88/169 (52%), Gaps = 34/169 (20%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            KE+  V+ F G YVNYRHLA+L DVMT +GHLMAITRHGINR ++G LMRCSFEETV++L
Sbjct: 1347 KELRAVISFDGSYVNYRHLAMLADVMTYRGHLMAITRHGINRVESGPLMRCSFEETVEIL 1406

Query: 579  MDAAAHAEADPMRG--------------------YIQRRLIKAMESV------MVHYDCT 612
            M+AA  +E D + G                    Y+ + +IK   S+       + Y  T
Sbjct: 1407 MEAALFSETDNICGVTENIILGQLPPLGTGSFEVYLNQDMIKNAHSISLPEPMAITYPDT 1466

Query: 613  VRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYR--FDPS 659
              N+ GQ        DG  G    H +  +       F + YR  F PS
Sbjct: 1467 PSNTGGQTPSY----DG--GSTPYHHQFSSFEAPFSPFNEAYRGDFSPS 1509



 Score =  106 bits (265), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 85/154 (55%), Gaps = 37/154 (24%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTD 1586
            + +VTA T IYYDP+P  TVI ED EFV  Y  +PD   +   +SPWLLR+ELDR+ +TD
Sbjct: 1142 MARVTAATEIYYDPEPNTTVIEEDLEFVTRYMMLPDEEINEGALSPWLLRVELDREMVTD 1201

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL++  I++ I   F                             D LNCIF+DDNA+KL
Sbjct: 1202 KKLSLYEITQCIKKDF-----------------------------DKLNCIFSDDNADKL 1232

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            ++RIR +  +++K    +D      DD FLR +E
Sbjct: 1233 IIRIRTIMDNENKESANDD------DDTFLRRVE 1260



 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 85/171 (49%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME V V YD TVRNS+G +IQ  YGEDGL G +VE Q  D++   +  F 
Sbjct: 817 GYIQRRLVKAMEDVSVRYDATVRNSLGDVIQFAYGEDGLDGCSVETQSFDSLKKDNNDFV 876

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
                         ++F   + R  +  GD             SW       +  V+ E+
Sbjct: 877 --------------KMFKHQIDR--LDYGD-------------SW------MDPLVVEEI 901

Query: 712 MGSGDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVIFILQR 761
                +   L++E+++L  DR  +R EI  +GES+  LP NL  +I   Q+
Sbjct: 902 RNDATIRETLDREFKRLEFDRHQMRTEIIPTGESSWPLPVNLKRLINNAQK 952



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 32/40 (80%)

Query: 1492 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            I + PRQI++PQ+NRPVMGIVQD+L   R  TKRD F+++
Sbjct: 481  IMMVPRQIVSPQSNRPVMGIVQDSLLGSRLFTKRDTFIER 520


>gi|157841364|gb|ABV83136.1| RNA polymerase 2 [Rhabditis sp. SB347]
          Length = 621

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/397 (59%), Positives = 285/397 (71%), Gaps = 17/397 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V+GED++SKQA  NATLL   L+RSTLC+K +A  Y+L+SEAFEWL+GE+E RF+QA   
Sbjct: 232  VSGEDRISKQAQYNATLLMNILIRSTLCSKKMASTYKLNSEAFEWLLGEVETRFKQAIAX 291

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-------VENSYLAGLTPSEFFF 1065
                   +  + +     + TL  F       ++          + N      TPS   F
Sbjct: 292  XXXXXGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVF 351

Query: 1066 ---HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
                A    E   D   K   T      L +VTANTAIYYDPD +NT I ED+E+V+++Y
Sbjct: 352  LQGSAAKDAEKAKDVLCKLEHTT-----LRKVTANTAIYYDPDVKNTCIEEDEEWVSIFY 406

Query: 1123 EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1182
            EMPDFDP+R SPWLLR+ELDR+RMTDKKL+ME I++KI+ GFGDDLN I+ DDNAEKLV 
Sbjct: 407  EMPDFDPSRSSPWLLRLELDRRRMTDKKLSMEQIADKIHQGFGDDLNVIYTDDNAEKLVF 466

Query: 1183 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1242
            RIR+ N DD     EE+ +DKMEDD+FLRCIE+NMLSD+TLQGI +IGKVYMH P+TD K
Sbjct: 467  RIRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGITSIGKVYMHKPKTDDK 524

Query: 1243 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1302
            KR+IIT  G FKAI +WLLETDGT+L+KVLSER VD VRT SNDICEIF+VLGIEAVRKS
Sbjct: 525  KRMIITPEGAFKAIREWLLETDGTALLKVLSERHVDAVRTSSNDICEIFEVLGIEAVRKS 584

Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1339
            +EKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 585  IEKEMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAI 621



 Score =  228 bits (582), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 108/143 (75%), Positives = 127/143 (88%), Gaps = 1/143 (0%)

Query: 353 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 412
           NVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 1   NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTA 60

Query: 413 VKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVAL 472
           VKTAETGYIQRRLIKAMESVMV+YD TVRNS+GQ+IQLRYGEDGL G  VE+Q + T+  
Sbjct: 61  VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLGQMIQLRYGEDGLDGMWVENQNMPTMKP 120

Query: 473 SHKKFEDKYRFDPSNERPTLRNV 495
           ++  FE +++ + ++E+ +LR +
Sbjct: 121 TNALFEKEFKLELTDEK-SLRTL 142



 Score =  155 bits (393), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/152 (57%), Positives = 106/152 (69%), Gaps = 30/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPD +NT I ED+E+V+++YEMPDFDP+R SPWLLR+ELDR+RMTDKK
Sbjct: 375  LRKVTANTAIYYDPDVKNTCIEEDEEWVSIFYEMPDFDPSRSSPWLLRLELDRRRMTDKK 434

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L+                            ME I++KI+ GFGDDLN I+ DDNAEKLV 
Sbjct: 435  LS----------------------------MEQIADKIHQGFGDDLNVIYTDDNAEKLVF 466

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIR+ N DD     EE+ +DKMEDD+FLRCIE
Sbjct: 467  RIRLTNQDDKGA--EEEQIDKMEDDVFLRCIE 496



 Score =  146 bits (368), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 76/92 (82%)

Query: 1019 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 1078
            NVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 1    NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTA 60

Query: 1079 VKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            VKTAET  +   L +   +  + YD   +N++
Sbjct: 61   VKTAETGYIQRRLIKAMESVMVNYDGTVRNSL 92



 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 103/170 (60%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+GQ+IQLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 67  GYIQRRLIKAMESVMVNYDGTVRNSLGQMIQLRYGEDGLDGMWVENQNMPTMKPTNALFE 126

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++ + ++E+ LR ++ EDV+REL GS D + E E                        
Sbjct: 127 KEFKLELTDEKSLRTLYTEDVVRELQGSSDALKEAE------------------------ 162

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF +G++ +VLPCNL  +I+  Q+
Sbjct: 163 -----------AEWGQLEEDRRLLRKIFPTGDAKIVLPCNLQRLIWNAQK 201



 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 44/53 (83%), Gaps = 3/53 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 822
           +C+I  VL   +VRKS+EKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 569 ICEIFEVLGIEAVRKSIEKEMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAI 621



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/38 (84%), Positives = 34/38 (89%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 553
           S+EKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 584 SIEKEMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAI 621


>gi|262303439|gb|ACY44312.1| RNA polymerase largest subunit [Eremocosta gigasella]
          Length = 654

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/298 (68%), Positives = 235/298 (78%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMM +LMFLP+WDGK+P P ILKPKPLWTGKQ+FSL+IPGNVN+ RTHSTHPD+ED G
Sbjct: 17  KDQMMTLLMFLPVWDGKVPIPAILKPKPLWTGKQLFSLVIPGNVNVIRTHSTHPDEEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++EHG L+ GI+CKK++G++SGSL+HI F ELGHEV G FYG+IQTVV
Sbjct: 77  PYKWISPGDTKVLIEHGELISGIVCKKTVGSASGSLMHIVFAELGHEVAGVFYGHIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGH+IGIGDTIADPQTY++IQ  IKKAK+DVIEVI+KAHN +LEPTPG      
Sbjct: 137 NNWLLLEGHTIGIGDTIADPQTYIDIQNTIKKAKQDVIEVIEKAHNDELEPTPG------ 190

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 191 ----------------------------------------NTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 211 KTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLP 268



 Score =  241 bits (616), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 131/221 (59%), Positives = 151/221 (68%), Gaps = 20/221 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V GED+LS QAN+NATLLF+ L+RSTLCTK V++ +RLS+EAF+WL+ EIE +FQQAQ  
Sbjct: 454  VPGEDRLSIQANDNATLLFRALLRSTLCTKRVSDEFRLSTEAFDWLLEEIETKFQQAQGQ 513

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
               G   V  K +  G  +  L   I     P++       +L G+        A    E
Sbjct: 514  PXAG---VSAKNVTLGVPR--LKEIINISKKPKTPSLT--VFLTGV--------AARDAE 558

Query: 1073 GLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRI 1132
               D   +   T      L +VTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRI
Sbjct: 559  KAKDVLCRLEHTT-----LRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPTRI 613

Query: 1133 SPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFN 1173
            SPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFN
Sbjct: 614  SPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFN 654



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/79 (94%), Positives = 76/79 (96%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 572  LRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 631

Query: 1589 LTMEAISEKINAGFGDDLN 1607
            LTME I+EKINAGFGDDLN
Sbjct: 632  LTMEQIAEKINAGFGDDLN 650



 Score =  134 bits (336), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/154 (46%), Positives = 90/154 (58%), Gaps = 35/154 (22%)

Query: 604 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERQ 663
           SVM+ YD TVRNS GQ+IQ RYGEDGL G  VE Q + T+  S K FE +++FD SNER 
Sbjct: 307 SVMITYDGTVRNSTGQVIQFRYGEDGLEGSTVESQSLPTLKPSDKAFEKRFKFDASNERY 366

Query: 664 LRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEK 723
           + RIF E+V+RELMGS   +SELEKE      W++L++                      
Sbjct: 367 MHRIFTEEVVRELMGSAMALSELEKE------WERLKK---------------------- 398

Query: 724 EWEKLCEDREALREIFSSGESNVVLPCNLMEVIF 757
                  DRE LR IF +G+S VV+PCNL   IF
Sbjct: 399 -------DREVLRTIFPTGDSKVVMPCNLQRXIF 425



 Score = 78.2 bits (191), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 43/59 (72%)

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           SVM+ YD TVRNS GQ+IQ RYGEDGL G  VE Q + T+  S K FE +++FD SNER
Sbjct: 307 SVMITYDGTVRNSTGQVIQFRYGEDGLEGSTVESQSLPTLKPSDKAFEKRFKFDASNER 365



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 27/27 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            +QVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLP 268


>gi|281203888|gb|EFA78084.1| RNA polymerase II largest subunit [Polysphondylium pallidum PN500]
          Length = 2159

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/449 (51%), Positives = 283/449 (63%), Gaps = 63/449 (14%)

Query: 47  MLVTVLPVPPLSVRPAV-----VMHGSAR--------NQEQMMNILMFLPIWDGKMPQPC 93
           M+V    V P S RP +      + GS +         ++ MMNILM+LP WDGK+P P 
Sbjct: 511 MMVPRQIVSPQSNRPVMGIVQDTLLGSMKFTKRDTFVERDLMMNILMWLPSWDGKIPPPA 570

Query: 94  ILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMG 153
           I KPK LWTGKQ+FSLIIP N+N+ R  STH D E           DT V+++ G LL G
Sbjct: 571 IWKPKKLWTGKQLFSLIIP-NINLQRFGSTHSDKEKEKSEM---AADTVVIIDQGELLTG 626

Query: 154 ILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQT 213
           ILCK+SLG ++GS++H+   E GH+ C  F    QTVVN+WL+                 
Sbjct: 627 ILCKRSLGAANGSIIHVVMNEHGHDSCRLFIDQTQTVVNHWLI----------------- 669

Query: 214 YLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKED 273
                                          G ++GIGDTIAD  T  ++  AI  AK  
Sbjct: 670 -----------------------------NHGFTVGIGDTIADAATMSKVTSAIANAKTQ 700

Query: 274 VIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVA 333
           V E+I KA +   E  PG ++ ++FE +VNR+LN ARD  G SA++SL E NN+KAMV A
Sbjct: 701 VKELIIKAQSNQFECQPGRSMLESFEKEVNRVLNTARDDAGTSAQRSLQESNNVKAMVNA 760

Query: 334 GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 393
           GSKGS INISQ++ACVGQQNVEGKR+PFGF+ RTLPHF KDDYGPESRGFVENSYL GLT
Sbjct: 761 GSKGSFINISQMMACVGQQNVEGKRVPFGFQNRTLPHFTKDDYGPESRGFVENSYLRGLT 820

Query: 394 PSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYG 453
           P EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME V V YD TVRNS+G +IQ  YG
Sbjct: 821 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVSVKYDATVRNSLGDVIQFAYG 880

Query: 454 EDGLCGEAVEHQRIDTVALSHKKFEDKYR 482
           EDGL    VE+Q  D++   ++ F   Y+
Sbjct: 881 EDGLDSCFVENQMFDSLKRDNQDFIKLYK 909



 Score =  369 bits (947), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 221/530 (41%), Positives = 315/530 (59%), Gaps = 77/530 (14%)

Query: 956  EDQLSKQA----NENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRF----- 1006
            ED +  QA    ++NATLLF  L+RSTL +K V E +RL+ +AF W+VGE+E++F     
Sbjct: 1020 EDTIYSQAWSETHQNATLLFSILLRSTLSSKRVLEEFRLNEKAFNWMVGEVESKFLLSIV 1079

Query: 1007 QQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFH 1066
               +++  +  Q++ G+                    P ++  +   + AG++       
Sbjct: 1080 NPGEMVGALAAQSI-GE--------------------PATQMTLNTFHYAGVSSKNVTLG 1118

Query: 1067 AMGGREGLIDTAVKTAETVNVLVFLFQVTANTA-----------------------IYYD 1103
                +E +I+ A KT +T ++ ++L    A  +                       IYYD
Sbjct: 1119 VPRLKE-IINIA-KTVKTPSLTIYLQPDAAKDSEKAKSVQCQLEYTTMATVTAATEIYYD 1176

Query: 1104 PDPQNTVIPEDQEFVNVYYEMPDFDPTR---ISPWLLRIELDRKRMTDKKLTMEAISEKI 1160
            PDPQ T++ ED+EFV+ Y  +PD D      +SPW+LRIELDR+ +TDKKL++  I++ I
Sbjct: 1177 PDPQQTLVKEDEEFVSRYLLLPDDDTKADDVLSPWVLRIELDREMVTDKKLSLSDITQCI 1236

Query: 1161 NAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSD 1220
               FG  LNCIF+DDNA+KL++RIR +  +DSK    +D      DD FLR IEA MLS+
Sbjct: 1237 KRDFGR-LNCIFSDDNADKLIIRIRTIEDNDSKTDGNDD------DDTFLRRIEAKMLSE 1289

Query: 1221 MTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPV 1280
            M L GI  I KV+M   + D + R+   E+G + +  +W+L+TDG +L++V+S  DVD  
Sbjct: 1290 MVLCGIRGIKKVFM---RHDDQVRV--NENGAYFSKKEWVLDTDGVNLLEVMSHPDVDHS 1344

Query: 1281 RTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAIT 1340
            RT SNDI EI QVLGIEAVR ++ KE+  V+ F G YVNYRHLA+L DVMT +GHLMAI+
Sbjct: 1345 RTVSNDIIEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAIS 1404

Query: 1341 RHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1400
            RHGINR ++G LMRCSFEETV++LMDAA  +E D ++GV+ENII+GQLP +GTG F++ L
Sbjct: 1405 RHGINRVESGPLMRCSFEETVEILMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVYL 1464

Query: 1401 DAEKCKDG--IEIPLATGMMG-----GPAGMFFGSAATPSSIPGPPAWYP 1443
            + +  K+   I +P  + MM      G         +TP   P  P   P
Sbjct: 1465 NQDMIKNAHSIAMPEPSTMMSHYNEPGSQTPSHDGGSTPYHHPFSPLDAP 1514



 Score =  157 bits (396), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 84/102 (82%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q++ACVGQQNVEGKR+PFGF+ RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 770  SQMMACVGQQNVEGKRVPFGFQNRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 829

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   + ++ YD   +N++
Sbjct: 830  GGREGLIDTAVKTSETGYIQRRLVKAMEDVSVKYDATVRNSL 871



 Score =  155 bits (392), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/188 (43%), Positives = 117/188 (62%), Gaps = 16/188 (8%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR ++ KE+  V+ F G YVNYRHLA+L DVMT +GHLMAI+RHGINR ++
Sbjct: 1354 IIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAISRHGINRVES 1413

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDG- 891
            G LMRCSFEETV++LMDAA  +E D ++GV+ENII+GQLP +GTG F++ L+ +  K+  
Sbjct: 1414 GPLMRCSFEETVEILMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVYLNQDMIKNAH 1473

Query: 892  -IEIPLATGMMGGPAGMFFGSAATPSSMSPQM----TPWAQSTPAYNALMSPGAAMTPG- 945
             I +P  + MM             P S +P      TP+       +A  SP      G 
Sbjct: 1474 SIAMPEPSTMM--------SHYNEPGSQTPSHDGGSTPYHHPFSPLDAPFSPFNEQYRGD 1525

Query: 946  -GPGFSPS 952
              P +SP+
Sbjct: 1526 FSPSYSPA 1533



 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 87/163 (53%), Gaps = 24/163 (14%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            KE+  V+ F G YVNYRHLA+L DVMT +GHLMAI+RHGINR ++G LMRCSFEETV++L
Sbjct: 1369 KELRAVISFDGSYVNYRHLAILADVMTYRGHLMAISRHGINRVESGPLMRCSFEETVEIL 1428

Query: 579  MDAAAHAEADPMRG--------------------YIQRRLIKAMESVMVHYDCTVRNSVG 618
            MDAA  +E D ++G                    Y+ + +IK   S+ +    T+ +   
Sbjct: 1429 MDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVYLNQDMIKNAHSIAMPEPSTMMSHYN 1488

Query: 619  QLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYR--FDPS 659
            +        DG  G    H     +      F ++YR  F PS
Sbjct: 1489 EPGSQTPSHDG--GSTPYHHPFSPLDAPFSPFNEQYRGDFSPS 1529



 Score =  108 bits (270), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 82/146 (56%), Gaps = 38/146 (26%)

Query: 1538 IYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTR---ISPWLLRIELDRKRMTDKKLTMEAI 1594
            IYYDPDPQ T++ ED+EFV+ Y  +PD D      +SPW+LRIELDR+ +TDKKL++  I
Sbjct: 1173 IYYDPDPQQTLVKEDEEFVSRYLLLPDDDTKADDVLSPWVLRIELDREMVTDKKLSLSDI 1232

Query: 1595 SEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN 1654
            ++ I   FG                              LNCIF+DDNA+KL++RIR + 
Sbjct: 1233 TQCIKRDFG-----------------------------RLNCIFSDDNADKLIIRIRTIE 1263

Query: 1655 SDDSKMQDEEDAVDKMEDDMFLRCIE 1680
             +DSK    +D      DD FLR IE
Sbjct: 1264 DNDSKTDGNDD------DDTFLRRIE 1283



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME V V YD TVRNS+G +IQ  YGEDGL    VE+Q  D++   ++ F 
Sbjct: 846 GYIQRRLVKAMEDVSVKYDATVRNSLGDVIQFAYGEDGLDSCFVENQMFDSLKRDNQDF- 904

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
                         +++   + R   G G               W       N  ++ E+
Sbjct: 905 -------------IKLYKHQIDRSDYGDG---------------W------INPLIIEEI 930

Query: 712 MGSGDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVI 756
                +   L++E++++  DR  LR EI  +GE++  LP NL  +I
Sbjct: 931 RNDSTIRETLDREFKRIEFDRNLLRTEIIPTGEASWPLPVNLRRMI 976



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 1492 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            I + PRQI++PQ+NRPVMGIVQDTL    K TKRD F+++
Sbjct: 510  IMMVPRQIVSPQSNRPVMGIVQDTLLGSMKFTKRDTFVER 549


>gi|77176711|gb|ABA64470.1| DNA-dependent RNA polymerase II largest subunit [Cyanophora
           paradoxa]
          Length = 1000

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/412 (54%), Positives = 279/412 (67%), Gaps = 53/412 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILK-PK-PLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +MNI+M L  +DG++P P I+K PK P WTGKQ+FS  +P NVN+ R HSTHPD E +  
Sbjct: 460 IMNIVMHLDSFDGRLPIPAIVKSPKGPRWTGKQLFSTFLP-NVNVVRFHSTHPDGESTD- 517

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              ISPGDT+V +E+G LL GI+CK++LGTS+GSL+H+   E G +    F+   Q V+N
Sbjct: 518 ---ISPGDTQVRIENGELLCGIVCKRTLGTSAGSLIHVIMNEHGPDTARVFFNMTQKVIN 574

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
           NWL+  G S+GIGDTIAD +T   I   +KKAKE+V  V+ +A    +E  PG S     
Sbjct: 575 NWLINVGFSVGIGDTIADDRTMESINSTLKKAKEEVDTVVIEAQQGKMELQPGRS----- 629

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
                  ++E                                  +FE++VNRILN ARD 
Sbjct: 630 -------FIE----------------------------------SFESKVNRILNQARDA 648

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G +A+ SL   NN+K M+ +GSKGS INISQ+ ACVGQQNVEGKRIPFGFR RTLPHF 
Sbjct: 649 AGKTAQGSLQRSNNVKTMLTSGSKGSFINISQMFACVGQQNVEGKRIPFGFRNRTLPHFT 708

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRLIKAME V
Sbjct: 709 KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLIKAMEDV 768

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           MV YD T RNS+G++IQ  YGEDG+ GE +E QR++++ L  K+ E K++ +
Sbjct: 769 MVQYDNTTRNSMGEIIQFLYGEDGMAGEFIEGQRLESLELDDKEMEKKFKMN 820



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 87/159 (54%), Positives = 100/159 (62%), Gaps = 6/159 (3%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGFR RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 679  SQMFACVGQQNVEGKRIPFGFRNRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 738

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++     E +   Y      
Sbjct: 739  GGREGLIDTAVKTSETGYIQRRLIKAMEDVMVQYDNTTRNSM----GEIIQFLYGEDGMA 794

Query: 1129 PTRISPWLLR-IELDRKRMTDKKLTMEAISEKINAGFGD 1166
               I    L  +ELD K M +KK  M         GF D
Sbjct: 795  GEFIEGQRLESLELDDKEM-EKKFKMNLDDRNFGEGFLD 832



 Score =  110 bits (275), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 94/171 (54%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAME VMV YD T RNS+G++IQ  YGEDG+ GE +E QR++++ L  K+ E
Sbjct: 755 GYIQRRLIKAMEDVMVQYDNTTRNSMGEIIQFLYGEDGMAGEFIEGQRLESLELDDKEME 814

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K++ +  +     R F E  L       DV +E+                         
Sbjct: 815 KKFKMNLDD-----RNFGEGFL-----DPDVAAEIR------------------------ 840

Query: 712 MGSGDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVIFILQR 761
            GS  +  +L+KE+E+L +DRE LR EI  SGE  V LP NL  +I+  Q+
Sbjct: 841 -GSAVIRHQLDKEYEQLLKDREQLRSEIVQSGEGAVHLPVNLKRLIWNAQK 890



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            +AGED LS++A ENAT LF   +R+TL TK V   YRLS+ A EWL+G IE+RF QA   
Sbjct: 921  IAGEDTLSREAQENATRLFNIHLRATLATKRVLSEYRLSAAALEWLLGVIESRFNQAIAH 980

Query: 1010 --QVIACVGQQNV 1020
              +++  +  Q++
Sbjct: 981  PGEMVGAIAAQSI 993



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 38/51 (74%), Gaps = 1/51 (1%)

Query: 1492 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            I   PRQI++PQ+NRPVMGIVQDTL A +KMT RD F++K V  N  ++ D
Sbjct: 418  IIAVPRQIVSPQSNRPVMGIVQDTLMASQKMTLRDTFIEKDVIMNIVMHLD 468



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 33/46 (71%)

Query: 35  LGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILM 80
           +G+DP++ARPDW  +T LPVPP +VRP + M+   R ++ + + LM
Sbjct: 136 MGLDPRWARPDWFCITHLPVPPAAVRPGIAMNSVQRAEDDLTSKLM 181


>gi|157841390|gb|ABV83149.1| RNA polymerase 2 [Acrobeloides maximus]
          Length = 616

 Score =  432 bits (1110), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/410 (55%), Positives = 284/410 (69%), Gaps = 53/410 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+GED++SKQA  NATLL   L+RSTLC+K VA+ ++L++EAFEW++GEIE RF QA   
Sbjct: 232  VSGEDRISKQAQYNATLLMNILLRSTLCSKQVAKVHKLNTEAFEWILGEIETRFNQAIAQ 291

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 292  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINVSKRPK----- 344

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
                    TPS   F        L   A K AE    ++       L +VTANTAIYYDP
Sbjct: 345  --------TPSLTVF--------LQGQAAKDAERAKDVLCKLEHCTLRKVTANTAIYYDP 388

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DP+NT I EDQE+V ++YEMPDFDP   SPWLLR+ELDRKRMTDKKLTMEAI+EKI+ GF
Sbjct: 389  DPKNTCIEEDQEWVQIFYEMPDFDPANASPWLLRLELDRKRMTDKKLTMEAIAEKIHKGF 448

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            GDDL+ I+ DDNA+KLV  IR+ NS   K  + E+ +DKMEDD FL+CIE+NMLSD+TLQ
Sbjct: 449  GDDLHVIYTDDNADKLVFHIRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQ 506

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GIE+I KVYMH PQTD KKR+ +T+ G F+ +++W+LETDGT+L+KVLSE  VDPVRT+S
Sbjct: 507  GIESISKVYMHKPQTDDKKRVELTQDGSFRMVSEWMLETDGTALLKVLSEPHVDPVRTYS 566

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1334
            NDICEIF+VLGIEAVRK++E+EMN V+ F G YVNYRHLALLCDVMTAKG
Sbjct: 567  NDICEIFEVLGIEAVRKAIEREMNQVISFDGSYVNYRHLALLCDVMTAKG 616



 Score =  227 bits (578), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 107/141 (75%), Positives = 123/141 (87%)

Query: 353 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 412
           NVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 1   NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTA 60

Query: 413 VKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVAL 472
           VKTAETGYIQRRLIKAMESVMV+YD TVRNSVGQ++QLRYGEDGL G  VE+Q +  +  
Sbjct: 61  VKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQMVQLRYGEDGLDGMWVENQVMPIMKP 120

Query: 473 SHKKFEDKYRFDPSNERPTLR 493
           ++  FE +++ + ++ER   R
Sbjct: 121 NNSLFEKQFKLNLTDERELRR 141



 Score =  173 bits (438), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 88/152 (57%), Positives = 103/152 (67%), Gaps = 30/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+NT I EDQE+V ++YEMPDFDP   SPWLLR+ELDRKRMTDKK
Sbjct: 375  LRKVTANTAIYYDPDPKNTCIEEDQEWVQIFYEMPDFDPANASPWLLRLELDRKRMTDKK 434

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTMEAI+EKI+ GF                            GDDL+ I+ DDNA+KLV 
Sbjct: 435  LTMEAIAEKIHKGF----------------------------GDDLHVIYTDDNADKLVF 466

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
             IR+ NS   K  + E+ +DKMEDD FL+CIE
Sbjct: 467  HIRLTNSTADK--EGEEQIDKMEDDTFLKCIE 496



 Score =  147 bits (370), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 76/92 (82%)

Query: 1019 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 1078
            NVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 1    NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTA 60

Query: 1079 VKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            VKTAET  +   L +   +  + YD   +N+V
Sbjct: 61   VKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 92



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/196 (40%), Positives = 113/196 (57%), Gaps = 50/196 (25%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNSVGQ++QLRYGEDGL G  VE+Q +  +  ++  FE
Sbjct: 67  GYIQRRLIKAMESVMVNYDGTVRNSVGQMVQLRYGEDGLDGMWVENQVMPIMKPNNSLFE 126

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++ + ++ER+LRR++ + V++ELMG+ + + E                          
Sbjct: 127 KQFKLNLTDERELRRLYADSVVKELMGNAEAMRE-------------------------- 160

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQRWKLWGNENLR 771
                    +E EW++L EDR  LR+IF  GES V LPCNL  +I+  Q+          
Sbjct: 161 ---------VEAEWQQLEEDRRLLRKIFPKGESKVHLPCNLKRLIWNAQK---------- 201

Query: 772 FLCKIIFVLSVRKSVE 787
                IF + +RK+V+
Sbjct: 202 -----IFHVDLRKTVD 212



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 39/48 (81%), Gaps = 3/48 (6%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 817
           +C+I  VL   +VRK++E+EMN V+ F G YVNYRHLALLCDVMTAKG
Sbjct: 569 ICEIFEVLGIEAVRKAIEREMNQVISFDGSYVNYRHLALLCDVMTAKG 616



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/33 (75%), Positives = 29/33 (87%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 548
           ++E+EMN V+ F G YVNYRHLALLCDVMTAKG
Sbjct: 584 AIEREMNQVISFDGSYVNYRHLALLCDVMTAKG 616


>gi|262303431|gb|ACY44308.1| RNA polymerase largest subunit [Cryptocellus centralis]
          Length = 268

 Score =  432 bits (1110), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/298 (69%), Positives = 235/298 (78%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++ MMNILMFLPIWDGKMP P ILKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPDDED G
Sbjct: 17  KDHMMNILMFLPIWDGKMPMPAILKPKPLWTGKQLFSLIIPGNVNLIRTHSTHPDDEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++EHG L+ GI+CKK++G++SGSL+H+ F ELG+EV G FYG+IQTVV
Sbjct: 77  PYKWISPGDTKVLIEHGELISGIVCKKTVGSASGSLMHVVFSELGYEVAGAFYGHIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGH+IGIGDTIADPQTY++IQ  IKKAK+DVIEVI+KAHN +LEPTPG      
Sbjct: 137 NNWLLLEGHTIGIGDTIADPQTYVDIQNTIKKAKQDVIEVIEKAHNDELEPTPG------ 190

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 191 ----------------------------------------NTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEG+RIPFGFRKRTLP
Sbjct: 211 KTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGRRIPFGFRKRTLP 268



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 30/36 (83%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            G   ++   +QVIACVGQQNVEG+RIPFGFRKRTLP
Sbjct: 233  GAKGSKINISQVIACVGQQNVEGRRIPFGFRKRTLP 268


>gi|45935329|gb|AAS79686.1| RNA polymerase II large subunit [Podocarpus macrophyllus]
          Length = 1013

 Score =  431 bits (1109), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/414 (52%), Positives = 276/414 (66%), Gaps = 50/414 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+PLWTGKQVF+LIIP  +N+ R  + H + E      
Sbjct: 481 FMNILMWWEDFDGKIPSPAILKPRPLWTGKQVFNLIIPKQINLIRYSAWHAESETG---- 536

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           +++ GDT V +E G +L G LCKK+LGTS+GSL+H+ + E+G +   +F  + Q +VN W
Sbjct: 537 FLTAGDTVVHIEKGEVLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLSHTQWLVNYW 596

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL +G S+GIGDTIAD  T   I   I +AK +V ++I+ A    LE  PG         
Sbjct: 597 LLQQGFSMGIGDTIADAATMEVINETISRAKNEVKQLIKAAQEKQLEAEPGR-------- 648

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FEN+VN++LN ARD  G
Sbjct: 649 --------------------------------------TMMESFENRVNQVLNKARDDAG 670

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KD
Sbjct: 671 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFDGRTLPHFTKD 730

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV
Sbjct: 731 DKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 790

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
            YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  K+FE+ Y+++   E
Sbjct: 791 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRKEFENVYKYEVDQE 844



 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 80/102 (78%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDD GPESRGFVENSYL GLTP EFFFHAM
Sbjct: 699  SQMTACVGQQNVEGKRIPYGFDGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAM 758

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 759  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 800



 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +  K+FE
Sbjct: 775 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRKEFE 834

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + Y+++   E                 + + I  L + + D  + ++ + +F+ +V    
Sbjct: 835 NVYKYEVDQE-----------------NWNPIYMLPEHVEDLKTIREFQNVFDAEV---- 873

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                         +KL  DR  L  EI  SG+++  +P NL  +I+  Q+
Sbjct: 874 --------------QKLESDRRQLGTEIAPSGDNSCPMPVNLKRLIWNAQK 910



 Score = 73.2 bits (178), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 50/73 (68%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F  L+RST  +K V + Y L+ EAFEW+VGEIE+RF Q+   
Sbjct: 941  VPGDDLISIEAQKNATLFFNILLRSTFASKRVLKEYHLTKEAFEWVVGEIESRFLQSLVA 1000

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 1001 PGEMIGCVAAQSI 1013



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 436  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 489


>gi|297603848|ref|NP_001054670.2| Os05g0151000 [Oryza sativa Japonica Group]
 gi|222630225|gb|EEE62357.1| hypothetical protein OsJ_17146 [Oryza sativa Japonica Group]
 gi|255676030|dbj|BAF16584.2| Os05g0151000 [Oryza sativa Japonica Group]
          Length = 1834

 Score =  431 bits (1108), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/445 (50%), Positives = 287/445 (64%), Gaps = 61/445 (13%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++  MNILM+   +DGK+P P ILKP+P+WTGKQVF+LIIP  +N+ R    H + E   
Sbjct: 557 KDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKQINLIRFSGWHSEAET-- 614

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
             ++I+PGDT V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +V
Sbjct: 615 --RFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 672

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL  G                                               SIGIG
Sbjct: 673 NYWLLQNGF----------------------------------------------SIGIG 686

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD  T   I   I KAK DV ++I++  +  LE   G T  ++FEN+VN +LN ARD
Sbjct: 687 DTIADAATMENINETISKAKNDVKKLIKQFRDNQLEAEAGRTTMESFENRVNEVLNKARD 746

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G SA+KSL+E NNLKAM  AGSKG+ INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF
Sbjct: 747 VAGSSAEKSLSESNNLKAMATAGSKGTFINISQMTACVGQQNVEGKRIPFGFTNRTLPHF 806

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            K+DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME 
Sbjct: 807 TKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 866

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRF--DPSNER 489
           +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F++ +R+  D  N +
Sbjct: 867 IMVKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDSLKMKKAEFDNVFRYELDDENWK 926

Query: 490 PT---------LRNVSSLRRVVNSK 505
           P          L+ +S +R V  ++
Sbjct: 927 PNYLSTQHAEDLKTISEIRNVFEAE 951



 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 235/511 (45%), Positives = 313/511 (61%), Gaps = 55/511 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F  L+RST  +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 1020 VPGDDDISIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVA 1079

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              ++I CV  Q+                 V  K +  G  R R + +  K+   P     
Sbjct: 1080 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTP----- 1134

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
               S    L P       +  ++ L     K  +       L  VT  T I+YDPDP  T
Sbjct: 1135 ---SLSVHLKPE------VNKKKEL----AKNVQCALEYTTLRSVTHATEIWYDPDPLGT 1181

Query: 1110 VIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
            +I ED EFV  YYEMPD   DP +ISPWLLRIEL+R+ M DKKL+M  I+EKIN  F DD
Sbjct: 1182 IIEEDAEFVQSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDD 1241

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQG 1225
            L+CIFNDDNA+KL+LR+RI N +  K  +QDE       EDD+FL+ IE+NML++M L+G
Sbjct: 1242 LSCIFNDDNADKLILRVRITNDEAQKGEIQDEYG-----EDDVFLKKIESNMLTEMALRG 1296

Query: 1226 IEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSN 1285
            I  I KV++     +        ++  FK    W+L+T+G +L+ V+   DVD  RT SN
Sbjct: 1297 IPGINKVFIKEGNVNK-----FEDNDGFKTEKGWMLDTEGVNLLAVMCHEDVDATRTTSN 1351

Query: 1286 DICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1345
             + E+ +VLGIEAVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGIN
Sbjct: 1352 HLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAVLCDTMTYRGHLMAITRHGIN 1411

Query: 1346 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 1405
            R DTG LMRCSFEETVD+L+DAA +AE+DP+RGVSENI++GQL  +GTG  DL L+ +  
Sbjct: 1412 RNDTGPLMRCSFEETVDILLDAAVYAESDPLRGVSENIMLGQLAPIGTGGCDLYLNDQML 1471

Query: 1406 KDGIEIPLATGMMGGPAGMFFGSAATPSSIP 1436
            K  IE+ L + + G   GM   + +  S  P
Sbjct: 1472 KQAIELQLPSYVEGLDFGMMTSACSPISGTP 1502



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/185 (50%), Positives = 126/185 (68%), Gaps = 7/185 (3%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DT
Sbjct: 1356 VIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDT 1415

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G LMRCSFEETVD+L+DAA +AE+DP+RGVSENI++GQL  +GTG  DL L+ +  K  I
Sbjct: 1416 GPLMRCSFEETVDILLDAAVYAESDPLRGVSENIMLGQLAPIGTGGCDLYLNDQMLKQAI 1475

Query: 893  EIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPG--AAMTPGGPGFS 950
            E+ L + + G   GM   SA +P S     TP+ Q   + + L+SP   A+ T     FS
Sbjct: 1476 ELQLPSYVEGLDFGM-MTSACSPIS----GTPYHQGMMSPSYLLSPDIRASPTAADAQFS 1530

Query: 951  PSVAG 955
            P V G
Sbjct: 1531 PYVGG 1535



 Score =  151 bits (381), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF K+DYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 778  SQMTACVGQQNVEGKRIPFGFTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAM 837

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 838  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 879



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 92/156 (58%), Gaps = 37/156 (23%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTD 1586
            L  VT  T I+YDPDP  T+I ED EFV  YYEMPD   DP +ISPWLLRIEL+R+ M D
Sbjct: 1163 LRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDEDIDPDKISPWLLRIELNREMMVD 1222

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+EKIN  F DDL+CIFNDDNA+KL
Sbjct: 1223 KKLS----------------------------MADIAEKINHEFDDDLSCIFNDDNADKL 1254

Query: 1647 VLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIE 1680
            +LR+RI N +  K  +QDE       EDD+FL+ IE
Sbjct: 1255 ILRVRITNDEAQKGEIQDEYG-----EDDVFLKKIE 1285



 Score =  125 bits (313), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/73 (73%), Positives = 63/73 (86%)

Query: 520  EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 579
            E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETVD+L+
Sbjct: 1372 ELRVVISFDGSYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILL 1431

Query: 580  DAAAHAEADPMRG 592
            DAA +AE+DP+RG
Sbjct: 1432 DAAVYAESDPLRG 1444



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 854 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDSLKMKKAEFD 913

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + +R++  +E       +     +L      ISE             +R +F        
Sbjct: 914 NVFRYELDDENWKPNYLSTQHAEDL----KTISE-------------IRNVF-------- 948

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                     E E +KL  DR  L  EI ++G++   +P NL  +I+  Q+
Sbjct: 949 ----------EAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQK 989



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 33/43 (76%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD  ++K
Sbjct: 515  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEK 557



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 42/53 (79%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+ ++LG++PKFARPDWM++ VLP+PP  VRP+V+M  S+R+++ + + L  +
Sbjct: 228 EDCLLLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 280


>gi|54291834|gb|AAV32202.1| putative RNA polymerase II [Oryza sativa Japonica Group]
          Length = 1741

 Score =  431 bits (1108), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/445 (50%), Positives = 287/445 (64%), Gaps = 61/445 (13%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++  MNILM+   +DGK+P P ILKP+P+WTGKQVF+LIIP  +N+ R    H + E   
Sbjct: 504 KDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKQINLIRFSGWHSEAET-- 561

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
             ++I+PGDT V +E G LL G LCKK+LGTS+GSL+H+ + E+G +   +F G+ Q +V
Sbjct: 562 --RFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 619

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL  G                                               SIGIG
Sbjct: 620 NYWLLQNGF----------------------------------------------SIGIG 633

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD  T   I   I KAK DV ++I++  +  LE   G T  ++FEN+VN +LN ARD
Sbjct: 634 DTIADAATMENINETISKAKNDVKKLIKQFRDNQLEAEAGRTTMESFENRVNEVLNKARD 693

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G SA+KSL+E NNLKAM  AGSKG+ INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF
Sbjct: 694 VAGSSAEKSLSESNNLKAMATAGSKGTFINISQMTACVGQQNVEGKRIPFGFTNRTLPHF 753

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            K+DYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME 
Sbjct: 754 TKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 813

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRF--DPSNER 489
           +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F++ +R+  D  N +
Sbjct: 814 IMVKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDSLKMKKAEFDNVFRYELDDENWK 873

Query: 490 PT---------LRNVSSLRRVVNSK 505
           P          L+ +S +R V  ++
Sbjct: 874 PNYLSTQHAEDLKTISEIRNVFEAE 898



 Score =  415 bits (1067), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/511 (45%), Positives = 313/511 (61%), Gaps = 55/511 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F  L+RST  +K V + YRL+ EAFEW++GEIE+RF Q+   
Sbjct: 967  VPGDDDISIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVA 1026

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              ++I CV  Q+                 V  K +  G  R R + +  K+   P     
Sbjct: 1027 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTP----- 1081

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
               S    L P       +  ++ L     K  +       L  VT  T I+YDPDP  T
Sbjct: 1082 ---SLSVHLKPE------VNKKKEL----AKNVQCALEYTTLRSVTHATEIWYDPDPLGT 1128

Query: 1110 VIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
            +I ED EFV  YYEMPD   DP +ISPWLLRIEL+R+ M DKKL+M  I+EKIN  F DD
Sbjct: 1129 IIEEDAEFVQSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDD 1188

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQG 1225
            L+CIFNDDNA+KL+LR+RI N +  K  +QDE       EDD+FL+ IE+NML++M L+G
Sbjct: 1189 LSCIFNDDNADKLILRVRITNDEAQKGEIQDEYG-----EDDVFLKKIESNMLTEMALRG 1243

Query: 1226 IEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSN 1285
            I  I KV++     +        ++  FK    W+L+T+G +L+ V+   DVD  RT SN
Sbjct: 1244 IPGINKVFIKEGNVNK-----FEDNDGFKTEKGWMLDTEGVNLLAVMCHEDVDATRTTSN 1298

Query: 1286 DICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1345
             + E+ +VLGIEAVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGIN
Sbjct: 1299 HLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAVLCDTMTYRGHLMAITRHGIN 1358

Query: 1346 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 1405
            R DTG LMRCSFEETVD+L+DAA +AE+DP+RGVSENI++GQL  +GTG  DL L+ +  
Sbjct: 1359 RNDTGPLMRCSFEETVDILLDAAVYAESDPLRGVSENIMLGQLAPIGTGGCDLYLNDQML 1418

Query: 1406 KDGIEIPLATGMMGGPAGMFFGSAATPSSIP 1436
            K  IE+ L + + G   GM   + +  S  P
Sbjct: 1419 KQAIELQLPSYVEGLDFGMMTSACSPISGTP 1449



 Score =  176 bits (445), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/185 (50%), Positives = 126/185 (68%), Gaps = 7/185 (3%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DT
Sbjct: 1303 VIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDT 1362

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G LMRCSFEETVD+L+DAA +AE+DP+RGVSENI++GQL  +GTG  DL L+ +  K  I
Sbjct: 1363 GPLMRCSFEETVDILLDAAVYAESDPLRGVSENIMLGQLAPIGTGGCDLYLNDQMLKQAI 1422

Query: 893  EIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPG--AAMTPGGPGFS 950
            E+ L + + G   GM   SA +P S     TP+ Q   + + L+SP   A+ T     FS
Sbjct: 1423 ELQLPSYVEGLDFGM-MTSACSPIS----GTPYHQGMMSPSYLLSPDIRASPTAADAQFS 1477

Query: 951  PSVAG 955
            P V G
Sbjct: 1478 PYVGG 1482



 Score =  150 bits (380), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF  RTLPHF K+DYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 725  SQMTACVGQQNVEGKRIPFGFTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAM 784

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 785  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 826



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 92/156 (58%), Gaps = 37/156 (23%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTD 1586
            L  VT  T I+YDPDP  T+I ED EFV  YYEMPD   DP +ISPWLLRIEL+R+ M D
Sbjct: 1110 LRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDEDIDPDKISPWLLRIELNREMMVD 1169

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+EKIN  F DDL+CIFNDDNA+KL
Sbjct: 1170 KKLS----------------------------MADIAEKINHEFDDDLSCIFNDDNADKL 1201

Query: 1647 VLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIE 1680
            +LR+RI N +  K  +QDE       EDD+FL+ IE
Sbjct: 1202 ILRVRITNDEAQKGEIQDEYG-----EDDVFLKKIE 1232



 Score =  125 bits (313), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/73 (73%), Positives = 63/73 (86%)

Query: 520  EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 579
            E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETVD+L+
Sbjct: 1319 ELRVVISFDGSYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILL 1378

Query: 580  DAAAHAEADPMRG 592
            DAA +AE+DP+RG
Sbjct: 1379 DAAVYAESDPLRG 1391



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F+
Sbjct: 801 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDSLKMKKAEFD 860

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + +R++  +E       +     +L      ISE             +R +F        
Sbjct: 861 NVFRYELDDENWKPNYLSTQHAEDL----KTISE-------------IRNVF-------- 895

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                     E E +KL  DR  L  EI ++G++   +P NL  +I+  Q+
Sbjct: 896 ----------EAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQK 936



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 33/43 (76%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            V  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD  ++K
Sbjct: 462  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEK 504


>gi|168053159|ref|XP_001779005.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669567|gb|EDQ56151.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1646

 Score =  431 bits (1107), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/408 (53%), Positives = 273/408 (66%), Gaps = 50/408 (12%)

Query: 77  NILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWI 136
           NILM+   + GK+P P ILKP+PLWTGKQ+F+LIIP  +N+ R    HPD E       +
Sbjct: 564 NILMWWEEFAGKIPIPTILKPRPLWTGKQIFTLIIPKQINLMRQAFWHPDSEVGD----L 619

Query: 137 SPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLL 196
           SPGDT+V +E G ++ G LCKK+LGT  GSL+H+ + E+G +   +F G+ Q +VN WLL
Sbjct: 620 SPGDTQVRIEKGEVVAGTLCKKTLGTGQGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 679

Query: 197 LEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIAD 256
            +G                                               SIGIGDTIAD
Sbjct: 680 QQGF----------------------------------------------SIGIGDTIAD 693

Query: 257 PQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGS 316
             T  +I   I  AK DV ++I+ A +  LE  PG T++++FEN+VN +LN ARD+ G S
Sbjct: 694 AATMEKINETISIAKNDVKDLIKMAQDKQLEAQPGRTMKESFENRVNGVLNKARDEAGAS 753

Query: 317 AKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDY 376
           A++SL+E NNLKAMV AGSKG+ INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KDDY
Sbjct: 754 AQRSLSESNNLKAMVTAGSKGTFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFTKDDY 813

Query: 377 GPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHY 436
           GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME VMV Y
Sbjct: 814 GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKY 873

Query: 437 DCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           D TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F   Y+F+
Sbjct: 874 DGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKAEFNRVYKFE 921



 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/514 (46%), Positives = 322/514 (62%), Gaps = 69/514 (13%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRF-----Q 1007
            V G+DQ+S +A  NATL F CL+RSTL +K V ++YRL+ EAF+W++GEIE RF      
Sbjct: 1007 VPGDDQISMEAQRNATLFFGCLLRSTLASKRVLKDYRLTREAFDWVIGEIETRFLMSLVA 1066

Query: 1008 QAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
              ++I CV  Q++ G+                    P ++  +   + AG++        
Sbjct: 1067 PGEMIGCVAAQSI-GE--------------------PATQMTLNTFHFAGVSAKNVTLGV 1105

Query: 1068 MGGREGLIDTAVKTAETVNVLVFL-----------------------FQVTANTAIYYDP 1104
               RE +I+ A KT +T ++ VFL                         VT  T I+YDP
Sbjct: 1106 PRLRE-IINVAKKT-KTPSLTVFLKPGINKEKEKAKNVQCALEYTTLRSVTQATEIWYDP 1163

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEAISEKINA 1162
            +P +T+I ED EFV  YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  I+EKIN 
Sbjct: 1164 EPMSTLIEEDVEFVRSYYEMPDEDVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINL 1223

Query: 1163 GFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMT 1222
             F DDL CIFNDDNAEKL+LRIRIMN +  K +    A ++ EDD+FL+ IE+NML++M 
Sbjct: 1224 EFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGE----ATEQSEDDVFLKKIESNMLTEMA 1279

Query: 1223 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1282
            L+GI  I KV++   + D K R    E+  F+   +W+L+T+G +++ V+   DVD  RT
Sbjct: 1280 LRGIPDIRKVFI---KEDKKNRF--DENVAFEPEKEWILDTEGVNMLAVMCHEDVDASRT 1334

Query: 1283 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1342
             SN + E+ +VLGIEAVR ++ KE+  V+ F G YVNYRHLA+LCDVMT +GHLMAITRH
Sbjct: 1335 LSNHLIEVIEVLGIEAVRNALLKELRDVISFDGSYVNYRHLAILCDVMTYRGHLMAITRH 1394

Query: 1343 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDA 1402
            GINR DTG +MRCSFEETVD+L+DAA +AEAD ++GV+ENI++GQL  +GTG F L L+ 
Sbjct: 1395 GINRNDTGPMMRCSFEETVDILLDAAVYAEADHLKGVTENIMLGQLAPIGTGDFGLHLNE 1454

Query: 1403 EKCKDGIEIPLATGMMGGPAGMFFGSAATPSSIP 1436
               +  IE+ L +   G   GM      TPS  P
Sbjct: 1455 NMLQHAIELQLPS-FEGTDYGM------TPSRSP 1481



 Score =  162 bits (411), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/215 (41%), Positives = 126/215 (58%), Gaps = 33/215 (15%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR ++ KE+  V+ F G YVNYRHLA+LCDVMT +GHLMAITRHGINR DT
Sbjct: 1342 VIEVLGIEAVRNALLKELRDVISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRNDT 1401

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G +MRCSFEETVD+L+DAA +AEAD ++GV+ENI++GQL  +GTG F L L+    +  I
Sbjct: 1402 GPMMRCSFEETVDILLDAAVYAEADHLKGVTENIMLGQLAPIGTGDFGLHLNENMLQHAI 1461

Query: 893  EIPLAT------GMMGGPAGMFFGSAATPSSMSPQ--MTPWAQSTPAYNALMSP------ 938
            E+ L +      GM    + M  G+      MSP   ++P  +++P   A  SP      
Sbjct: 1462 ELQLPSFEGTDYGMTPSRSPM-IGTPHNEGMMSPSYLLSPSLRASPLSEAQFSPYVGSMP 1520

Query: 939  ------------------GAAMTPGGPGFSPSVAG 955
                                  +P  PG+SP+  G
Sbjct: 1521 FSPSSPGYSPSSPGYSPLSPGYSPTSPGYSPTSPG 1555



 Score =  151 bits (382), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 780  SQMTACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 839

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 840  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSL 881



 Score =  134 bits (338), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 93/154 (60%), Gaps = 34/154 (22%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTD 1586
            L  VT  T I+YDP+P +T+I ED EFV  YYEMPD D  P +ISPWLLRIEL+R+ M D
Sbjct: 1150 LRSVTQATEIWYDPEPMSTLIEEDVEFVRSYYEMPDEDVAPEKISPWLLRIELNREMMVD 1209

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+EKIN  F DDL CIFNDDNAEKL
Sbjct: 1210 KKLS----------------------------MADIAEKINLEFDDDLTCIFNDDNAEKL 1241

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            +LRIRIMN +  K +    A ++ EDD+FL+ IE
Sbjct: 1242 ILRIRIMNDEAPKGE----ATEQSEDDVFLKKIE 1271



 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 69/87 (79%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            KE+  V+ F G YVNYRHLA+LCDVMT +GHLMAITRHGINR DTG +MRCSFEETVD+L
Sbjct: 1357 KELRDVISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1416

Query: 579  MDAAAHAEADPMRGYIQRRLIKAMESV 605
            +DAA +AEAD ++G  +  ++  +  +
Sbjct: 1417 LDAAVYAEADHLKGVTENIMLGQLAPI 1443



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 78/171 (45%), Gaps = 51/171 (29%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME VMV YD TVRNS+G +IQ  YGEDG+    +E Q++D++ +   +F 
Sbjct: 856 GYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKAEFN 915

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             Y+F+                                 +D   W               
Sbjct: 916 RVYKFE---------------------------------IDRDDW--------------- 927

Query: 712 MGSGDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVIFILQR 761
             S D I+  + E  KL  DR  +  EI  +GE+N  LP NL  +I+  Q+
Sbjct: 928 --SPDYINVFDAEVSKLEADRRQMGLEIAPTGEANWPLPVNLKRLIWNAQK 976



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            V  + + P+ +++PQ+NRPV+GIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 517  VLELMMVPKCVVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFYNILMWWE 570



 Score = 45.8 bits (107), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 40/53 (75%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           E+  ILG++PKFARPDWM++  LP+PP  VRP+V+M  SAR+++ + + L  +
Sbjct: 230 EDCAILGLNPKFARPDWMILQALPIPPPPVRPSVMMDSSARSEDDLTHQLAMI 282


>gi|12642616|gb|AAK00312.1|AF315822_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monoblepharis
           macrandra]
          Length = 1603

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/414 (52%), Positives = 279/414 (67%), Gaps = 51/414 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           +++ +MNILM++  WDG +P P I+KP PLWTGKQ+ SL IP ++N+    +THPDDE  
Sbjct: 478 SRDMVMNILMWVEDWDGVIPLPAIVKPVPLWTGKQMMSLAIP-DINLVGFSATHPDDEKG 536

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
                +S GDTKV++E G++L G +CKK++G+S+G ++H    E G +   +F+   Q +
Sbjct: 537 D----MSVGDTKVIIEGGTILSGTMCKKTVGSSAGGVIHTIMNEHGPDAAKKFFNGTQKI 592

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN WLL                                       HN       G S+GI
Sbjct: 593 VNYWLL---------------------------------------HN-------GFSVGI 606

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIAD  T   I   IKKAK DV E+I+ A    L+  PG T+R+TFE++VN++LN AR
Sbjct: 607 GDTIADGVTMQSITDTIKKAKADVAEIIKNAQANKLDAEPGMTVRETFESKVNKVLNKAR 666

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           D  G  A+KSL  YNN+K MV+AGSKGS INISQ+ ACVGQQNVEGKRIP+GFR RTLPH
Sbjct: 667 DDAGKKAEKSLKIYNNVKQMVIAGSKGSFINISQMTACVGQQNVEGKRIPYGFRYRTLPH 726

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F KDD+ PESRGFVENSYL GL+P EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E
Sbjct: 727 FTKDDHSPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALE 786

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            VMV YD TVRNS+G ++Q  YGEDG+    VE Q+++T+ ++ ++F+ +Y+ D
Sbjct: 787 DVMVKYDGTVRNSLGHVVQFVYGEDGMDATGVERQQLETIRMTEEEFKRRYKLD 840



 Score =  315 bits (808), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 191/462 (41%), Positives = 270/462 (58%), Gaps = 19/462 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            + GED LS  A  NATLLF  LVR  L TK V   +RL+  AF WL+GEIE+RF+ A+V 
Sbjct: 946  ITGEDGLSTMAQHNATLLFNILVRHLLATKRVYAEHRLNRNAFRWLIGEIESRFKAAKVN 1005

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-------VENSYLAGLTPSEFFF 1065
                   +  + I     + TL  F     G ++          + N      TPS    
Sbjct: 1006 PAEMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKEIINVATNLRTPSLLVC 1065

Query: 1066 HAMG--GREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYE 1123
                  GR   +  A K    +     L ++   + +YYDPD +N+V+  D+++++ Y+E
Sbjct: 1066 LKANKDGRPLDLPQAKKIQAKIEYTT-LGKLAVQSEVYYDPDLRNSVVEADRDWLDAYFE 1124

Query: 1124 MPDFDP--TRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLV 1181
            + D D    R+S W LRIE+DR R  DK ++M  I+ KI++ + D L+ + +DDNA  L 
Sbjct: 1125 IEDADALQARLSSWALRIEIDRGRRIDKDISMSEIARKISSQYQDVLHVMHSDDNAPSLA 1184

Query: 1182 LRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1241
            L IRI  + D  MQ+      + ED + LR +E+ +++ + L GI  I +VY+    ++ 
Sbjct: 1185 LVIRI--NQDEAMQESLKESAQTED-VILRDVESQLMASLALGGITNIRRVYI----SEQ 1237

Query: 1242 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1301
            K  +  T +G  +   + +LETDG +L +V++  +VD  RT+SN   EI+ VLGIEA R 
Sbjct: 1238 KVAVQNTATGAIEQAQEHILETDGINLREVMAVEEVDFTRTYSNAPLEIYAVLGIEAGRA 1297

Query: 1302 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1361
            ++ KE+  V++F G YVNYRHLALL DVM  KG LM+ITRHGINR + GAL R SFEETV
Sbjct: 1298 ALLKEIRKVIEFDGSYVNYRHLALLVDVMCQKGGLMSITRHGINRTENGALARSSFEETV 1357

Query: 1362 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1403
            ++LMDAA   E D  RGVSENII+GQL  +GTG FD+LLD +
Sbjct: 1358 EILMDAAGSGETDICRGVSENIILGQLAPLGTGEFDVLLDEQ 1399



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/143 (54%), Positives = 96/143 (67%), Gaps = 8/143 (5%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GFR RTLPHF KDD+ PESRGFVENSYL GL+P EFFFHAM
Sbjct: 699  SQMTACVGQQNVEGKRIPYGFRYRTLPHFTKDDHSPESRGFVENSYLRGLSPQEFFFHAM 758

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N++       V   Y     D
Sbjct: 759  GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSL----GHVVQFVYGEDGMD 814

Query: 1129 PTRISPWLLRIELDRKRMTDKKL 1151
             T +     R +L+  RMT+++ 
Sbjct: 815  ATGVE----RQQLETIRMTEEEF 833



 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/203 (44%), Positives = 115/203 (56%), Gaps = 9/203 (4%)

Query: 751  NLMEVIFI--LQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLAL 808
            NL EV+ +  +   + + N  L     ++ + + R ++ KE+  V++F G YVNYRHLAL
Sbjct: 1263 NLREVMAVEEVDFTRTYSNAPLEIYA-VLGIEAGRAALLKEIRKVIEFDGSYVNYRHLAL 1321

Query: 809  LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 868
            L DVM  KG LM+ITRHGINR + GAL R SFEETV++LMDAA   E D  RGVSENII+
Sbjct: 1322 LVDVMCQKGGLMSITRHGINRTENGALARSSFEETVEILMDAAGSGETDICRGVSENIIL 1381

Query: 869  GQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS 928
            GQL  +GTG FD+LLD E+  +        G+        F    TP   +P     AQ 
Sbjct: 1382 GQLAPLGTGEFDVLLD-EQVLEANARSATGGLYTNSYTADFSGGKTPDHRAPMSPSGAQF 1440

Query: 929  TPAYNALMSPGAAMTPGGPGFSP 951
             PA     SPG A     PG  P
Sbjct: 1441 YPA-----SPGGAPYENYPGDQP 1458



 Score =  103 bits (257), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 90/170 (52%), Gaps = 37/170 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD TVRNS+G ++Q  YGEDG+    VE Q+++T+ ++ ++F+
Sbjct: 775 GYIQRRLVKALEDVMVKYDGTVRNSLGHVVQFVYGEDGMDATGVERQQLETIRMTEEEFK 834

Query: 652 DKYRFD---PSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVL 708
            +Y+ D   P   + L  +   DV  EL+G G                       +E+  
Sbjct: 835 RRYKLDLMTPETRKWLPTVVTNDVRHELLGDG----------------------MDENA- 871

Query: 709 RELMGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVIF 757
                       LE E+ +L EDR  +R  IF +G+SN  LP N+  +I+
Sbjct: 872 ----------KVLEMEYTQLVEDRNVMRNFIFRNGDSNWPLPSNIRRLIW 911



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/130 (43%), Positives = 74/130 (56%), Gaps = 10/130 (7%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            KE+  V++F G YVNYRHLALL DVM  KG LM+ITRHGINR + GAL R SFEETV++L
Sbjct: 1301 KEIRKVIEFDGSYVNYRHLALLVDVMCQKGGLMSITRHGINRTENGALARSSFEETVEIL 1360

Query: 579  MDAAAHAEADPMRGYIQRRLIKAMESVMVH----------YDCTVRNSVGQLIQLRYGED 628
            MDAA   E D  RG  +  ++  +  +              +   R++ G L    Y  D
Sbjct: 1361 MDAAGSGETDICRGVSENIILGQLAPLGTGEFDVLLDEQVLEANARSATGGLYTNSYTAD 1420

Query: 629  GLCGEAVEHQ 638
               G+  +H+
Sbjct: 1421 FSGGKTPDHR 1430



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 33/154 (21%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDP--TRISPWLLRIELDRKRMTD 1586
            L K+   + +YYDPD +N+V+  D+++++ Y+E+ D D    R+S W LRIE+DR R  D
Sbjct: 1092 LGKLAVQSEVYYDPDLRNSVVEADRDWLDAYFEIEDADALQARLSSWALRIEIDRGRRID 1151

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            K ++M                              I+ KI++ + D L+ + +DDNA  L
Sbjct: 1152 KDISM----------------------------SEIARKISSQYQDVLHVMHSDDNAPSL 1183

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
             L IRI  + D  MQ+      + E D+ LR +E
Sbjct: 1184 ALVIRI--NQDEAMQESLKESAQTE-DVILRDVE 1214



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 1496 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            PRQII+P++N+PVMGIVQDTL  +RK T RD FL +
Sbjct: 444  PRQIISPKHNQPVMGIVQDTLCGIRKFTIRDNFLSR 479



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 37/46 (80%), Gaps = 1/46 (2%)

Query: 31  ESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSA-RNQEQM 75
           + + LG++P+++RP+WM++TVLPVPP  VRP+VV  G+  R+Q+ +
Sbjct: 153 DCVSLGLNPEWSRPEWMIITVLPVPPPQVRPSVVGDGTGLRSQDDL 198


>gi|262303421|gb|ACY44303.1| RNA polymerase largest subunit [Aphonopelma chalcodes]
          Length = 268

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/298 (69%), Positives = 234/298 (78%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMMN+LMFLPIWDGKMP P ILKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPD+ED G
Sbjct: 17  KDQMMNLLMFLPIWDGKMPMPAILKPKPLWTGKQLFSLIIPGNVNLIRTHSTHPDEEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++EHG L+ GI+CKK++G+SSGSL+HI F ELG E+ G FYG+IQTVV
Sbjct: 77  PYKWISPGDTKVLIEHGELISGIVCKKTVGSSSGSLMHIVFSELGFEIAGAFYGHIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGH+IGIGDTIADPQTY++IQ  IKKAK DVIEVI+KAHN +LEPTPG      
Sbjct: 137 NNWLLLEGHTIGIGDTIADPQTYIDIQNTIKKAKVDVIEVIEKAHNDELEPTPG------ 190

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 191 ----------------------------------------NTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 211 KTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLP 268



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 30/36 (83%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            G   ++   +QVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 233  GAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLP 268


>gi|194460397|gb|ACF71873.1| RNA polymerase II [Euglossa lugubris]
          Length = 227

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/273 (77%), Positives = 221/273 (80%), Gaps = 46/273 (16%)

Query: 85  WDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVV 144
           WDGK PQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+
Sbjct: 1   WDGKXPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 60

Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
           VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGI
Sbjct: 61  VEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGI 120

Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
           GDTIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                   
Sbjct: 121 GDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG------------------- 161

Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
                                      NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY
Sbjct: 162 ---------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 194

Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGK 357
           NNLKAMVV+GSKGSNINISQVIACVGQQNVEGK
Sbjct: 195 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGK 227


>gi|83320430|gb|ABC02842.1| RNA polymerase II largest subunit, partial [Cladochytrium
           replicatum]
          Length = 981

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/410 (53%), Positives = 270/410 (65%), Gaps = 51/410 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           M NILM++P WDG +P P ILKP PLWTGKQ  SL++P  VNM   HS HPD    G + 
Sbjct: 451 MKNILMWVPNWDGVVPMPAILKPVPLWTGKQAISLVLP-KVNMIGFHSQHPD----GEHT 505

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            +SPGDT+V +E G LLMGILCK+++G+SSG ++HI   +LGHE C  F+   Q VVN W
Sbjct: 506 LVSPGDTRVQIEEGELLMGILCKQTVGSSSGGIIHIAMNDLGHEQCKMFFEGAQAVVNYW 565

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL                                       HN       G SIGIGDTI
Sbjct: 566 LL---------------------------------------HN-------GFSIGIGDTI 579

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
            D  T   + + I+ AK +V ++I  A    L+  PG T+R++FE+ VN  L  AR++TG
Sbjct: 580 TDATTMDHVNLTIESAKLEVEKIIATAQAGTLQRKPGMTVRESFESLVNYELGRARERTG 639

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
             +  SL E NN K MVVAGSKGSNINISQ++ACVGQQNVEGKRIPFGF+ RTLPHF KD
Sbjct: 640 ARSTNSLREQNNFKQMVVAGSKGSNINISQIMACVGQQNVEGKRIPFGFKGRTLPHFKKD 699

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D+ P+SRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E + V
Sbjct: 700 DHSPQSRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDLSV 759

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            YD TVR++VG ++Q  YG+DG+ G  VE Q ++++ +S  KF + Y  D
Sbjct: 760 KYDSTVRDAVGNIVQFVYGDDGMDGAKVEKQTLESMKMSDTKFRETYFVD 809



 Score =  150 bits (380), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 82/102 (80%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q++ACVGQQNVEGKRIPFGF+ RTLPHF KDD+ P+SRGFVENSYL GLTP EFFFHAM
Sbjct: 668  SQIMACVGQQNVEGKRIPFGFKGRTLPHFKKDDHSPQSRGFVENSYLRGLTPQEFFFHAM 727

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   + ++ YD   ++ V
Sbjct: 728  GGREGLIDTAVKTAETGYIQRRLVKALEDLSVKYDSTVRDAV 769



 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 37/172 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E + V YD TVR++VG ++Q  YG+DG+ G  VE Q ++++ +S  KF 
Sbjct: 744 GYIQRRLVKALEDLSVKYDSTVRDAVGNIVQFVYGDDGMDGAKVEKQTLESMKMSDTKFR 803

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + Y  D                          S +  E+V++             V++++
Sbjct: 804 ETYFVDAKE-----------------------SCISYELVEYH------------VVKDV 828

Query: 712 MGSGDVISELEKEWEKLCEDREALR-EIFSSGES-NVVLPCNLMEVIFILQR 761
           M S +V   L  E+++L EDR  LR EIF++  S ++ LP NL  VI+  Q+
Sbjct: 829 MESMEVQELLHNEYDQLYEDRRVLREEIFAAEHSFSLPLPVNLKRVIWKAQK 880



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 44/59 (74%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            + G+D+LS +A  NATLLFQ LVRSTL T+ V E +RL   AF+W++GEI++RF Q  V
Sbjct: 909  IRGKDELSVEAQANATLLFQILVRSTLATRRVLEEFRLDRRAFDWIIGEIDSRFNQTLV 967



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 24/109 (22%)

Query: 1494 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL---------------DKVTANTAI 1538
            + PRQI++PQ N PVMGIVQDTL  +RK+T+RD FL               D V    AI
Sbjct: 411  MVPRQIVSPQKNAPVMGIVQDTLCGIRKLTRRDCFLTMDLMKNILMWVPNWDGVVPMPAI 470

Query: 1539 YYDPDPQNT-------VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELD 1580
               P P  T       V+P+    +  + + PD + T +SP   R++++
Sbjct: 471  -LKPVPLWTGKQAISLVLPK-VNMIGFHSQHPDGEHTLVSPGDTRVQIE 517



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 36/46 (78%)

Query: 35  LGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILM 80
           +G+ P++ARP+WM++ VL VPPLSVRP+V M G  R+++ + + LM
Sbjct: 128 MGLSPEWARPEWMIIQVLLVPPLSVRPSVHMDGMGRSEDDLTHKLM 173


>gi|262303461|gb|ACY44323.1| RNA polymerase largest subunit [Stenochrus portoricensis]
          Length = 268

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/298 (68%), Positives = 234/298 (78%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMMN+LMFLPIWDGKMP P ILKPKPLWTGKQ+FSLIIP N+N+ RTHSTHPDDED G
Sbjct: 17  KDQMMNLLMFLPIWDGKMPMPAILKPKPLWTGKQLFSLIIPDNINLIRTHSTHPDDEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++EHG L+ GI+CKK++G++SGSL+H+ F ELG+EV G FYG+IQTVV
Sbjct: 77  PYKWISPGDTKVLIEHGQLISGIVCKKTVGSASGSLMHVVFNELGYEVAGAFYGHIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGH+IGIGDTIADPQTY++IQ  IKKAK DVIEVI+KAHN +LEPTPG      
Sbjct: 137 NNWLLLEGHTIGIGDTIADPQTYVDIQNTIKKAKHDVIEVIEKAHNDELEPTPG------ 190

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 191 ----------------------------------------NTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 211 KTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLP 268



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 30/36 (83%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            G   ++   +QVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 233  GAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLP 268


>gi|38232295|gb|AAR14983.1| RNA polymerase II largest subunit [Loxothylacus texanus]
          Length = 272

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/302 (69%), Positives = 234/302 (77%), Gaps = 46/302 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++ MMN+LMFLP WDGK+PQP +LKP+PLWTGKQ+FSLIIPGNVNM  THS HPDDEDSG
Sbjct: 17  RDDMMNLLMFLPTWDGKVPQPTVLKPRPLWTGKQLFSLIIPGNVNMISTHSVHPDDEDSG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           P++WISPGDTKV+V++G L+MGILCKK+LGTS+GSLLHIC+LELGHE+ G FY +IQ+VV
Sbjct: 77  PFKWISPGDTKVLVDNGELIMGILCKKTLGTSAGSLLHICWLELGHEIAGHFYHDIQSVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLLLEGHSIGIGDTI+DP TY +IQ  I+KAK+DVI VI+KAHN +LEPTPG      
Sbjct: 137 NAWLLLEGHSIGIGDTISDPDTYTDIQKTIRKAKDDVIGVIEKAHNDELEPTPG------ 190

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFEN VNRILNDARD
Sbjct: 191 ----------------------------------------NTLRQTFENCVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           KTG SAK SL EYNNLKAMVVAGSKGS INISQVIACVGQQNVEGKRIPFGFRKRTLPHF
Sbjct: 211 KTGASAKNSLGEYNNLKAMVVAGSKGSAINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 270

Query: 372 IK 373
           IK
Sbjct: 271 IK 272



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/31 (96%), Positives = 31/31 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 1039
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIK
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 272


>gi|50346887|gb|AAT75150.1| RNA polymerase 2 [Caenorhabditis sp. DF5070]
          Length = 606

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/400 (56%), Positives = 287/400 (71%), Gaps = 23/400 (5%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
            V G D +SKQA  NATLL   L+RSTLCTK +  + +L++EAF+WL+GE+E+RF QA  Q
Sbjct: 215  VGGSDDISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDWLLGEVESRFMQAIAQ 274

Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-----VENSYLAGLTPSEFFF 1065
                VG    +    P         H+        + G      + N      TPS   F
Sbjct: 275  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVF 334

Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    LI  A + AE   +VL       L +VTANTAIYYDPDP+NTVI ED+E+V+
Sbjct: 335  --------LIGAAARDAEKAKDVLCKLEHTTLKKVTANTAIYYDPDPKNTVINEDEEWVS 386

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            ++YEMPDFD TR SPWLLRIELDRKRMTDKKLTME I+++I++GFG+D++ I+ DDNAEK
Sbjct: 387  IFYEMPDFDTTRTSPWLLRIELDRKRMTDKKLTMEMIADRIHSGFGNDVHTIYTDDNAEK 446

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LV R+RI  + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQGI +I KVYM+ P T
Sbjct: 447  LVFRLRI--AGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNT 504

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            D KKR +IT+ G FK+I +W+LETDGT+L++VL+E+ +DPVRT SNDICEIF+VLGIEAV
Sbjct: 505  DDKKRTVITDEGGFKSITEWILETDGTALLRVLAEQQIDPVRTTSNDICEIFEVLGIEAV 564

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1339
            RK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 565  RKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAI 604



 Score =  191 bits (484), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 91/119 (76%), Positives = 103/119 (86%)

Query: 370 HFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 429
           HFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM
Sbjct: 1   HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 60

Query: 430 ESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
           ESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  +   FE  +R D ++E
Sbjct: 61  ESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNDAVFERDFRTDLTDE 119



 Score =  176 bits (446), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 89/152 (58%), Positives = 110/152 (72%), Gaps = 30/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+NTVI ED+E+V+++YEMPDFD TR SPWLLRIELDRKRMTDKK
Sbjct: 358  LKKVTANTAIYYDPDPKNTVINEDEEWVSIFYEMPDFDTTRTSPWLLRIELDRKRMTDKK 417

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I++GFG+D++T                            I+ DDNAEKLV 
Sbjct: 418  LTMEMIADRIHSGFGNDVHT----------------------------IYTDDNAEKLVF 449

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI  + D K + +E+ VDKMEDD+FLRCIE
Sbjct: 450  RLRI--AGDDKGEGQEEQVDKMEDDVFLRCIE 479



 Score =  127 bits (320), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 99/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  +   FE
Sbjct: 50  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNDAVFE 109

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++E  +++ ++EDV+R+L  S D I ++E                        
Sbjct: 110 RDFRTDLTDELFMKKYYSEDVIRDLNESPDAIEKVE------------------------ 145

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +++  Q+
Sbjct: 146 -----------SEWTQLEEDRRLLRKIFPKGDAKIVLPCNLQRLMWNAQK 184



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 60/75 (80%)

Query: 1036 HFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVT 1095
            HFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET  +   L +  
Sbjct: 1    HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 60

Query: 1096 ANTAIYYDPDPQNTV 1110
             +  + YD   +N++
Sbjct: 61   ESVMVNYDGTVRNSL 75



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 44/53 (83%), Gaps = 3/53 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 822
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 552 ICEIFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAI 604



 Score = 67.4 bits (163), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 34/38 (89%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 553
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 567 AIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAI 604


>gi|262303451|gb|ACY44318.1| RNA polymerase largest subunit [Leiobunum verrucosum]
          Length = 654

 Score =  429 bits (1102), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/298 (68%), Positives = 231/298 (77%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MNILMFLPIWDGK+P P ILKPKPLWTGKQ+FSLIIPGNVN+ R HSTHPDDED G
Sbjct: 17  KEQIMNILMFLPIWDGKVPMPAILKPKPLWTGKQIFSLIIPGNVNLIRKHSTHPDDEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY WISPGDTKV++EHG L+ GI+CK ++G SSGSL+H+ F ELGHEV G FYG+IQTVV
Sbjct: 77  PYCWISPGDTKVLIEHGELITGIVCKNTVGGSSGSLMHVVFAELGHEVAGAFYGHIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGH+IGIGDTIAD QTY +IQM I+KAK+DVI+VI+KAHN +LEP+PG      
Sbjct: 137 NNWLLLEGHTIGIGDTIADQQTYKDIQMTIRKAKQDVIDVIEKAHNDELEPSPG------ 190

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 191 ----------------------------------------NTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 211 KTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLP 268



 Score =  244 bits (622), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 135/227 (59%), Positives = 154/227 (67%), Gaps = 32/227 (14%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V GED+LS QAN+NAT LF+ L+RSTLC+K VAE +RLS+EAF+WL+GEI+ RFQQ+QV 
Sbjct: 454  VQGEDRLSVQANDNATFLFRALLRSTLCSKRVAEEFRLSAEAFDWLLGEIDTRFQQSQVQ 513

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
               G   V  K +  G  +  L   I     P+             TPS   F       
Sbjct: 514  PXAG---VSAKNVTLGVPR--LKEIINISKKPK-------------TPSLTVF------- 548

Query: 1073 GLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD 1126
             L   A + AE   +VL       L +VTANTAIYYDPDPQNTVI EDQEFVNVYYEMPD
Sbjct: 549  -LTGAAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPD 607

Query: 1127 FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFN 1173
            FDP+RISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFN
Sbjct: 608  FDPSRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFN 654



 Score =  160 bits (405), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/79 (93%), Positives = 76/79 (96%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDP+RISPWLLRIELDRKRMTDKK
Sbjct: 572  LRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPSRISPWLLRIELDRKRMTDKK 631

Query: 1589 LTMEAISEKINAGFGDDLN 1607
            LTME I+EKINAGFGDDLN
Sbjct: 632  LTMEQIAEKINAGFGDDLN 650



 Score =  137 bits (346), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/154 (47%), Positives = 89/154 (57%), Gaps = 35/154 (22%)

Query: 604 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERQ 663
           SVM  YD TVRNS GQ+IQ RYGEDGL G AVE Q + T+  S+K+FE K++FD  NER 
Sbjct: 307 SVMATYDGTVRNSTGQVIQFRYGEDGLDGVAVEFQNLPTIKPSNKRFELKFKFDIQNERH 366

Query: 664 LRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEK 723
           LRRIF ED++REL GS   +SELEKE                                  
Sbjct: 367 LRRIFTEDIVRELQGSASTLSELEKE---------------------------------- 392

Query: 724 EWEKLCEDREALREIFSSGESNVVLPCNLMEVIF 757
            WE+L +DRE LR++F  G++ VVLPCNL    F
Sbjct: 393 -WERLKKDREMLRQVFPMGDNKVVLPCNLQRXTF 425



 Score = 77.8 bits (190), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 56/93 (60%), Gaps = 10/93 (10%)

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVM  YD TVRNS GQ+IQ RYGEDGL G AVE Q + T+  S+K+FE K++FD  NER 
Sbjct: 307 SVMATYDGTVRNSTGQVIQFRYGEDGLDGVAVEFQNLPTIKPSNKRFELKFKFDIQNER- 365

Query: 491 TLRNVSSLRRVVNS---KPLLIGCWKLTSVEKE 520
                  LRR+      + L      L+ +EKE
Sbjct: 366 ------HLRRIFTEDIVRELQGSASTLSELEKE 392



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 27/27 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            +QVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLP 268


>gi|3172136|gb|AAC18417.1| RNA polymerase II largest subunit [Acanthamoeba castellanii]
          Length = 1569

 Score =  429 bits (1102), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/413 (54%), Positives = 270/413 (65%), Gaps = 55/413 (13%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++ MMNILM+L  WDG +P P ILKPK LWTGKQVFSLIIP N N        PD     
Sbjct: 472 KDVMMNILMWLESWDGTVPTPTILKPKQLWTGKQVFSLIIPRNTNFVNADDEEPD----- 526

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
               +S  D KV++E G L+ GIL KK+LGTS  SL+H+ + E G EVC  F   +Q VV
Sbjct: 527 ----MSFTDNKVLIEEGELVSGILNKKTLGTSHKSLVHVIWNEHGSEVCKHFLNQVQHVV 582

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL                                       H+       G S+G+G
Sbjct: 583 NYWLL---------------------------------------HH-------GFSVGVG 596

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD +T  +I   I+KAK++V E   +A    LE  PG T+ ++FE  +N+ILN ARD
Sbjct: 597 DTIADEETLAKITQTIRKAKDEVKERQLEAQQGQLERQPGRTMMESFEFVINQILNKARD 656

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G SA+KSL   NN KAMV+AGSKGS INISQV+ACVGQQNVEGKRIPF FR RTLPHF
Sbjct: 657 DAGNSAQKSLRRSNNFKAMVIAGSKGSAINISQVLACVGQQNVEGKRIPFCFRDRTLPHF 716

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
           +KDD+GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E 
Sbjct: 717 VKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALED 776

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           VMV YD TVRNS+G +IQ  YGEDG+ G+ VE Q +D + +S++    KY+ D
Sbjct: 777 VMVKYDYTVRNSLGDVIQFLYGEDGMDGQTVETQPLDALKMSNEGVVLKYQHD 829



 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/513 (45%), Positives = 327/513 (63%), Gaps = 63/513 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            + G+D +SK+A  NA LLF  L+R TL ++ V + YRL   +++WL+GEI +RF ++   
Sbjct: 930  IPGQDDISKEAQANAILLFSILLRFTLASRRVLQEYRLDQISWDWLLGEITDRFYKSLCD 989

Query: 1010 --QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
              ++I  +  Q++ G+                    P ++  +   + AG++        
Sbjct: 990  PGEMIGALAAQSI-GE--------------------PATQMTLNTFHFAGVSAKNVTLGV 1028

Query: 1068 MGGREGLIDTAVKTAETVNVLVFL-----------------------FQVTANTAIYYDP 1104
               +E LI+ A KT +T ++ V+L                         VTA T I+YDP
Sbjct: 1029 PRLKE-LINIA-KTIKTPSLTVYLEPHCSRDHEAAKNVQCSLQHTTLRDVTAATEIFYDP 1086

Query: 1105 DPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINA 1162
            DP NTVI EDQ+FV  Y+ MP+   + + +SPWLLRIEL+R++MTD KL+M+ I+E+I+A
Sbjct: 1087 DPVNTVITEDQDFVRAYFLMPEEEINTSNLSPWLLRIELNREKMTDTKLSMQEIAERIHA 1146

Query: 1163 GFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMT 1222
             FG DLNCI+NDDNA+KL+LRIRI N +++K  D+E +V   +DD+FL+ IE+NML++M 
Sbjct: 1147 DFGGDLNCIYNDDNADKLILRIRINNDEENKAPDQEGSVG--DDDVFLKQIESNMLTEMD 1204

Query: 1223 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1282
            L+GIE I KV++     + K ++ I   GE+    + +L+T+GT+L+ V+S  DVD  RT
Sbjct: 1205 LKGIEGIKKVFIR----EDKNKVAIDARGEYTKANELVLDTEGTNLLAVMSHPDVDHTRT 1260

Query: 1283 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1342
             SN+I E  +VLGIEAVR ++ +E+  V+ F G YVNYRHLA+L DVMT +GHLMAITRH
Sbjct: 1261 TSNNIIETIEVLGIEAVRNALLRELRNVISFDGAYVNYRHLAILADVMTYRGHLMAITRH 1320

Query: 1343 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDA 1402
            GINR +TG LMRCSFEET D+L++AA  +E DP+ GVSENI++GQLP +GTGCFDL L+ 
Sbjct: 1321 GINRVETGCLMRCSFEETADILLEAATFSELDPLSGVSENILLGQLPPLGTGCFDLFLNE 1380

Query: 1403 EKCKDGIEIPL---ATGMMGGPAGMFFGSAATP 1432
             K KD IE P    AT M   P     GS ATP
Sbjct: 1381 SKLKDAIEPPAGGEATAMFYEPGATSPGS-ATP 1412



 Score =  181 bits (458), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 123/187 (65%), Gaps = 17/187 (9%)

Query: 775  KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
            +++ + +VR ++ +E+  V+ F G YVNYRHLA+L DVMT +GHLMAITRHGINR +TG 
Sbjct: 1270 EVLGIEAVRNALLRELRNVISFDGAYVNYRHLAILADVMTYRGHLMAITRHGINRVETGC 1329

Query: 835  LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI 894
            LMRCSFEET D+L++AA  +E DP+ GVSENI++GQLP +GTGCFDL L+  K KD IE 
Sbjct: 1330 LMRCSFEETADILLEAATFSELDPLSGVSENILLGQLPPLGTGCFDLFLNESKLKDAIEP 1389

Query: 895  PLATGMMGGPAGMFFGSAAT-PSSMSPQMTP-------WAQSTPAYNALMSPGAAMTPGG 946
            P      G    MF+   AT P S +P M         +  +TP Y   MSPGA  TP  
Sbjct: 1390 PAG----GEATAMFYEPGATSPGSATPYMGSDERYLPNFFHTTPMYR--MSPGA--TPAA 1441

Query: 947  PGFSPSV 953
              +SP V
Sbjct: 1442 -SYSPYV 1447



 Score =  155 bits (392), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/102 (70%), Positives = 83/102 (81%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QV+ACVGQQNVEGKRIPF FR RTLPHF+KDD+GPESRGFVENSYL GLTP EFFFHAM
Sbjct: 688  SQVLACVGQQNVEGKRIPFCFRDRTLPHFVKDDFGPESRGFVENSYLRGLTPQEFFFHAM 747

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 748  GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDYTVRNSL 789



 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/154 (47%), Positives = 99/154 (64%), Gaps = 32/154 (20%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTD 1586
            L  VTA T I+YDPDP NTVI EDQ+FV  Y+ MP+   + + +SPWLLRIEL+R++MTD
Sbjct: 1073 LRDVTAATEIFYDPDPVNTVITEDQDFVRAYFLMPEEEINTSNLSPWLLRIELNREKMTD 1132

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
             KL+M                            + I+E+I+A FG DLNCI+NDDNA+KL
Sbjct: 1133 TKLSM----------------------------QEIAERIHADFGGDLNCIYNDDNADKL 1164

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            +LRIRI N +++K  D+E +V   +DD+FL+ IE
Sbjct: 1165 ILRIRINNDEENKAPDQEGSVG--DDDVFLKQIE 1196



 Score =  112 bits (281), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 63/81 (77%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            +E+  V+ F G YVNYRHLA+L DVMT +GHLMAITRHGINR +TG LMRCSFEET D+L
Sbjct: 1283 RELRNVISFDGAYVNYRHLAILADVMTYRGHLMAITRHGINRVETGCLMRCSFEETADIL 1342

Query: 579  MDAAAHAEADPMRGYIQRRLI 599
            ++AA  +E DP+ G  +  L+
Sbjct: 1343 LEAATFSELDPLSGVSENILL 1363



 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 92/189 (48%), Gaps = 38/189 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD TVRNS+G +IQ  YGEDG+ G+ VE Q +D + +S++   
Sbjct: 764 GYIQRRLVKALEDVMVKYDYTVRNSLGDVIQFLYGEDGMDGQTVETQPLDALKMSNEGVV 823

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KY+ D                                  D  SW +     +  +   +
Sbjct: 824 LKYQHD---------------------------------YDSPSWGE--GWIDPVIADAI 848

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVIFILQRWKLWGNENL 770
             S +    L+KE+E++  DR  LRE IF +G+    LP NL  +I   Q+    G + +
Sbjct: 849 ANSPEKKRILDKEFEQILADRRLLREKIFLAGDDRWPLPVNLTRMILNAQKIFHLGPKKV 908

Query: 771 RFL--CKII 777
             L  C+I+
Sbjct: 909 SDLDPCQIV 917



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 21/96 (21%)

Query: 1494 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD------PDPQ- 1545
            + P+QI+T Q+N+PV+GIVQDTL     +T+RD F++K V  N  ++ +      P P  
Sbjct: 435  MVPKQIVTAQSNKPVIGIVQDTLLGGCLLTQRDTFIEKDVMMNILMWLESWDGTVPTPTI 494

Query: 1546 -------------NTVIPEDQEFVNVYYEMPDFDPT 1568
                         + +IP +  FVN   E PD   T
Sbjct: 495  LKPKQLWTGKQVFSLIIPRNTNFVNADDEEPDMSFT 530


>gi|83320458|gb|ABC02856.1| RNA polymerase II largest subunit, partial [Endogone pisiformis]
          Length = 845

 Score =  428 bits (1101), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/422 (51%), Positives = 272/422 (64%), Gaps = 50/422 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +E +MNI++++P WDG++P   ILKPKP+WTGKQ+ S++IP  +N    HS+HP+ E++ 
Sbjct: 308 KEMVMNIVLYVPAWDGQIPAXAILKPKPMWTGKQIVSMVIPEXINCDTFHSSHPEAENT- 366

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
              W+SPGDT+V +E G L+ GI+CKK++GT+ G L+H    ELGH     F    QTVV
Sbjct: 367 ---WMSPGDTRVHIEDGDLICGIVCKKTVGTADGGLIHTIVNELGHTAARDFLSGTQTVV 423

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL                                                G SIGIG
Sbjct: 424 NFWLL----------------------------------------------NHGFSIGIG 437

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD +T   I   I  AK  V ++I  A    LE  PG T+R++FE +VN+ LN ARD
Sbjct: 438 DTIADKETMNSITNIISTAKSRVSDIILAAQQDKLECEPGMTIRESFEAKVNQALNKARD 497

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G  A+ SL E NN+K MVV+GSKGS INISQ+ ACVGQQNVEGKRIP+GF+ RTLPHF
Sbjct: 498 DAGKKAQASLREDNNVKQMVVSGSKGSFINISQMSACVGQQNVEGKRIPYGFKFRTLPHF 557

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDD+ PESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E 
Sbjct: 558 TKDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALED 617

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMV YD TVRNS+G +IQ  YGEDG+    VE Q++ ++      FE +YR D  N +  
Sbjct: 618 VMVKYDGTVRNSLGDVIQFCYGEDGMDACFVERQKLHSLDCKQTDFERRYRLDVLNTKGG 677

Query: 492 LR 493
           L+
Sbjct: 678 LK 679



 Score =  149 bits (375), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF+ RTLPHF KDD+ PESRGFVENSYL GLTP EFFFHAM
Sbjct: 529  SQMSACVGQQNVEGKRIPYGFKFRTLPHFTKDDHSPESRGFVENSYLRGLTPQEFFFHAM 588

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 589  GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSL 630



 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 86/166 (51%), Gaps = 34/166 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD TVRNS+G +IQ  YGEDG+    VE Q++ ++      FE
Sbjct: 605 GYIQRRLVKALEDVMVKYDGTVRNSLGDVIQFCYGEDGMDACFVERQKLHSLDCKQTDFE 664

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YR D  N +                 G   + LE                  DV R++
Sbjct: 665 RRYRLDVLNTK----------------GGLKPNTLEF-----------------DVQRQI 691

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVI 756
            G+ DV   L++E+++L EDR+ L + IF +G+    LP NL  +I
Sbjct: 692 EGNEDVQGLLDEEFQQLQEDRDTLSKFIFKTGDGKWPLPTNLQRLI 737



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 40/54 (74%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRF 1006
            V G D++S +A  NATLL+Q L+RST  TK V E + L+S AF +++GEI++RF
Sbjct: 773  VRGSDKISVEAQRNATLLYQILLRSTFSTKRVLEEFHLNSAAFTYVLGEIKSRF 826



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 51/106 (48%), Gaps = 21/106 (19%)

Query: 1496 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYY--------------D 1541
            P+QI++PQ+N PVMGIVQDTL  +RK TKRD FL K      + Y               
Sbjct: 273  PKQIVSPQSNXPVMGIVQDTLCGIRKFTKRDCFLTKEMVMNIVLYVPAWDGQIPAXAILK 332

Query: 1542 PDPQNT-------VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELD 1580
            P P  T       VIPE       +   P+ + T +SP   R+ ++
Sbjct: 333  PKPMWTGKQIVSMVIPEXINCDTFHSSHPEAENTWMSPGDTRVHIE 378


>gi|242071129|ref|XP_002450841.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
 gi|241936684|gb|EES09829.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
          Length = 1874

 Score =  428 bits (1101), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/445 (50%), Positives = 286/445 (64%), Gaps = 61/445 (13%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++  MNILM+   +DGK+P P ILKP+P+WTGKQVF+LIIP  +N+ R  S H D+E   
Sbjct: 556 KDVFMNILMWWEDFDGKIPAPAILKPRPIWTGKQVFNLIIPRQINLIRFCSWHSDEEKG- 614

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
              +++P DT V +E G LL G LCKK+LGT SGSL+HI + E+G +   +F G  Q +V
Sbjct: 615 ---FVTPSDTVVRIEKGELLSGTLCKKTLGTGSGSLIHIIWEEVGPDAARKFLGYTQWLV 671

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL  G                                               SIGIG
Sbjct: 672 NYWLLQNGF----------------------------------------------SIGIG 685

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           D IAD  T  +I  AI  AK+ V ++I++A +  L+  PG+T+ ++FEN+VN  LN ARD
Sbjct: 686 DMIADAATMADINKAISGAKDCVKKLIKQARDEQLKAEPGHTMMESFENKVNEALNKARD 745

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G + + +L+E NNLKAMV AGSKGS INISQ+ ACVGQQN+EGKRIPFGF  RTLPHF
Sbjct: 746 NVGSNVQNNLSESNNLKAMVSAGSKGSFINISQMAACVGQQNIEGKRIPFGFSDRTLPHF 805

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME 
Sbjct: 806 TKDDYGPESRGFVENSYLQGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 865

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRF--DPSNER 489
           +MV YD TVRNS+G ++Q  YGEDG+    +E Q +D++ +  ++F+  +R+  D  N R
Sbjct: 866 IMVKYDGTVRNSLGDVVQFIYGEDGMDAVWIEEQNLDSLKMKKEEFDTVFRYELDDENWR 925

Query: 490 PT---------LRNVSSLRRVVNSK 505
           P          L+ +S  R V+ ++
Sbjct: 926 PNYLLPVHFDDLKTISEFRSVLEAE 950



 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/500 (43%), Positives = 306/500 (61%), Gaps = 67/500 (13%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +S +A +NATL F   +R+T  +K V   YRL+ EAFEW++ EI  RF Q+   
Sbjct: 1019 VPGDDAISIEAQKNATLFFNIHLRATFASKRVLREYRLTREAFEWIIDEIVWRFSQSLVA 1078

Query: 1010 --QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
              ++I CV  Q++ G+                    P ++  +   + AG++        
Sbjct: 1079 PSEMIGCVAAQSI-GE--------------------PATQMTLNTFHFAGVSAKNVTLGV 1117

Query: 1068 MGGREGLIDTAVKTAETVNVLVFL-----------------------FQVTANTAIYYDP 1104
               RE  I    K  +T ++ V+L                         VT  T ++YDP
Sbjct: 1118 PRLRE--IINVAKKIKTPSLSVYLKPEVNKTKELAKSVQCALEYTTLRSVTHATEVWYDP 1175

Query: 1105 DPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINA 1162
            DP  T+I ED EFV  YYEMPD   DP +ISPWLLRIEL+R+ M DKKL+M  I+ +IN 
Sbjct: 1176 DPMGTIIEEDLEFVLSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIANEINR 1235

Query: 1163 GFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMT 1222
             F  DL+CIF+DDNA+KL+LR+RI+N + S+ +  +D+     D++FL+ IE+NML++M+
Sbjct: 1236 EFDGDLSCIFSDDNADKLILRLRIINDEASRGEILDDSAG---DEVFLKKIESNMLAEMS 1292

Query: 1223 LQGIEAIGKVYMHLPQTDSKKRIIITE---SGEFKAIADWLLETDGTSLMKVLSERDVDP 1279
            L+GI  I KV++        K + + +   S  FK   +W+L+TDG +L+ V+   DVD 
Sbjct: 1293 LRGIPDINKVFI--------KEVKVNKFDVSDGFKEHKEWMLDTDGVNLLAVMCHEDVDA 1344

Query: 1280 VRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1339
             RT SN + E+ +VLGIEAVR+++  E+ +V+ F G YVNYRHLA+LCD MT +GHLMAI
Sbjct: 1345 TRTTSNHLTEVIEVLGIEAVRRALLDELRSVISFDGSYVNYRHLAVLCDTMTYRGHLMAI 1404

Query: 1340 TRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1399
            TRHGINR DTG LMRCSFEETVD+L+DAA HAE+D +RGV+ENI++GQL  +GTG   L 
Sbjct: 1405 TRHGINRNDTGPLMRCSFEETVDILLDAAVHAESDYLRGVTENIMLGQLAPIGTGGCSLF 1464

Query: 1400 LDAEKCKDGIEIPLATGMMG 1419
            L+ +  +  IE+ L + + G
Sbjct: 1465 LNDQMLQQAIELQLPSYVDG 1484



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/136 (53%), Positives = 103/136 (75%)

Query: 767  NENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHG 826
            + +L  + +++ + +VR+++  E+ +V+ F G YVNYRHLA+LCD MT +GHLMAITRHG
Sbjct: 1349 SNHLTEVIEVLGIEAVRRALLDELRSVISFDGSYVNYRHLAVLCDTMTYRGHLMAITRHG 1408

Query: 827  INRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 886
            INR DTG LMRCSFEETVD+L+DAA HAE+D +RGV+ENI++GQL  +GTG   L L+ +
Sbjct: 1409 INRNDTGPLMRCSFEETVDILLDAAVHAESDYLRGVTENIMLGQLAPIGTGGCSLFLNDQ 1468

Query: 887  KCKDGIEIPLATGMMG 902
              +  IE+ L + + G
Sbjct: 1469 MLQQAIELQLPSYVDG 1484



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQN+EGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 777  SQMAACVGQQNIEGKRIPFGFSDRTLPHFTKDDYGPESRGFVENSYLQGLTPQEFFFHAM 836

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 837  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 878



 Score =  124 bits (312), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 68/86 (79%)

Query: 520  EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 579
            E+ +V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETVD+L+
Sbjct: 1371 ELRSVISFDGSYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILL 1430

Query: 580  DAAAHAEADPMRGYIQRRLIKAMESV 605
            DAA HAE+D +RG  +  ++  +  +
Sbjct: 1431 DAAVHAESDYLRGVTENIMLGQLAPI 1456



 Score =  119 bits (299), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 98/172 (56%), Gaps = 40/172 (23%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTD 1586
            L  VT  T ++YDPDP  T+I ED EFV  YYEMPD   DP +ISPWLLRIEL+R+ M D
Sbjct: 1162 LRSVTHATEVWYDPDPMGTIIEEDLEFVLSYYEMPDEDIDPDKISPWLLRIELNREMMVD 1221

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+ +IN  F  DL+CIF+DDNA+KL
Sbjct: 1222 KKLS----------------------------MADIANEINREFDGDLSCIFSDDNADKL 1253

Query: 1647 VLRIRIMNSDDSKMQDEEDA------VDKMEDDMF----LRCIEETDRSFVK 1688
            +LR+RI+N + S+ +  +D+      + K+E +M     LR I + ++ F+K
Sbjct: 1254 ILRLRIINDEASRGEILDDSAGDEVFLKKIESNMLAEMSLRGIPDINKVFIK 1305



 Score = 78.2 bits (191), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G ++Q  YGEDG+    +E Q +D++ +  ++F+
Sbjct: 853 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVVQFIYGEDGMDAVWIEEQNLDSLKMKKEEFD 912

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R++  +E      +  + L  +                HF               +L
Sbjct: 913 TVFRYELDDEN-----WRPNYLLPV----------------HFD--------------DL 937

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
               +  S LE E  KL  DR  L  EI ++G     LP NL  +I+  Q+
Sbjct: 938 KTISEFRSVLEAEVHKLEADRFQLGTEIATNGSHTWPLPVNLKRLIWNAQK 988



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 33/43 (76%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            V  + + P+ I++PQ+N+PVMGIVQDTL   RK+TKRD  ++K
Sbjct: 514  VLELMMVPKCIVSPQSNKPVMGIVQDTLLGCRKITKRDTLIEK 556



 Score = 42.0 bits (97), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 41/53 (77%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           +ES++LG+ PK ARPDWM++ VLP+PP  VRP+V+M  S+++++ + + L  +
Sbjct: 227 KESLLLGLHPKLARPDWMILQVLPIPPPPVRPSVMMGTSSKSEDDLTHQLAMI 279


>gi|157841484|gb|ABV83208.1| RNA polymerase 2 [Choriorhabditis cristata]
          Length = 378

 Score =  428 bits (1100), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/396 (55%), Positives = 282/396 (71%), Gaps = 43/396 (10%)

Query: 974  LVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRT 1033
            L+RSTLC+K +A +++L++EAFEWL+GE+E RFQQA  IA  G+       +      ++
Sbjct: 3    LIRSTLCSKKMATSHKLNAEAFEWLLGEVETRFQQA--IAQPGE-------MVGALAAQS 53

Query: 1034 LPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFL-- 1091
            L         P ++  +   + AG++           +E  I    KT +T ++  FL  
Sbjct: 54   LGE-------PATQMTLNTFHYAGVSAKNVTLGVPRLKE--IINVSKTLKTPSLTCFLQG 104

Query: 1092 ---------------------FQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPT 1130
                                  +VTANTAIYYDP+P+NT I EDQE+V+++YEM D DP+
Sbjct: 105  AAAKDAEKAKDVLCKLEHTTLRKVTANTAIYYDPEPKNTCIEEDQEWVSLFYEMGDLDPS 164

Query: 1131 RISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD 1190
            R+SPW+LR+ELDRKRMTDKKLTME I++KI+ GFGDDLN I+ DDNA+KLV R+RI N  
Sbjct: 165  RVSPWVLRLELDRKRMTDKKLTMEHIADKIHQGFGDDLNVIYADDNADKLVFRLRISNQS 224

Query: 1191 DSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITES 1250
            D K   EE+ +DKMEDD+FLRCIE+NMLSD+TLQGI +I KVYMH P +D KK++IIT  
Sbjct: 225  DDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGISSIAKVYMHKPTSDDKKKVIITGD 282

Query: 1251 GEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTV 1310
            G F+AI +WLLETDGT+L+KVLSE+ +DPVRT SNDICEIF+VLGIEAVRK++E+EMN V
Sbjct: 283  GGFRAIPEWLLETDGTALLKVLSEQYIDPVRTSSNDICEIFEVLGIEAVRKAIEREMNNV 342

Query: 1311 LQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1346
            + F G YVNYRHLALLCDVMT KGHLMAITRHGINR
Sbjct: 343  ISFDGSYVNYRHLALLCDVMTCKGHLMAITRHGINR 378



 Score =  174 bits (440), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 87/152 (57%), Positives = 106/152 (69%), Gaps = 30/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP+P+NT I EDQE+V+++YEM D DP+R+SPW+LR+ELDRKRMTDKK
Sbjct: 125  LRKVTANTAIYYDPEPKNTCIEEDQEWVSLFYEMGDLDPSRVSPWVLRLELDRKRMTDKK 184

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I++KI+ GFGDDLN                             I+ DDNA+KLV 
Sbjct: 185  LTMEHIADKIHQGFGDDLNV----------------------------IYADDNADKLVF 216

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N  D K   EE+ +DKMEDD+FLRCIE
Sbjct: 217  RLRISNQSDDKA--EEEQIDKMEDDVFLRCIE 246



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/60 (71%), Positives = 50/60 (83%), Gaps = 3/60 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  VL   +VRK++E+EMN V+ F G YVNYRHLALLCDVMT KGHLMAITRHGINR
Sbjct: 319 ICEIFEVLGIEAVRKAIEREMNNVISFDGSYVNYRHLALLCDVMTCKGHLMAITRHGINR 378



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/45 (80%), Positives = 40/45 (88%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 560
           ++E+EMN V+ F G YVNYRHLALLCDVMT KGHLMAITRHGINR
Sbjct: 334 AIEREMNNVISFDGSYVNYRHLALLCDVMTCKGHLMAITRHGINR 378


>gi|120564951|gb|ABM27003.1| RNA polymerase II largest subunit, partial [Chytriomyces hyalinus]
          Length = 1003

 Score =  427 bits (1099), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/418 (52%), Positives = 272/418 (65%), Gaps = 50/418 (11%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           +MNILM++P WDG +P P I+KP PLWTGKQ+ SLIIP  +N+   HS HPDDE   P  
Sbjct: 466 VMNILMWVPDWDGVVPTPAIVKPVPLWTGKQMMSLIIP-KINLENFHSQHPDDE---PNA 521

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            +S GDTKV+++ G  + GILCKK++G + G ++H+  +E G E   RF+   Q VVN W
Sbjct: 522 DVSVGDTKVIIQDGEHIAGILCKKTVGNAGGGIIHVTAMEYGPEAAKRFFHACQVVVNYW 581

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           +L  G                                               SIGIGDTI
Sbjct: 582 MLQNGF----------------------------------------------SIGIGDTI 595

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD  T   I  AI+ A++ V  +I  AH   L+P PG T+R+TFE  +   LN ARD  G
Sbjct: 596 ADEATMGNIVNAIQTARDKVKVIIAAAHENKLKPHPGMTIRETFEADIKSELNRARDSAG 655

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL+E+NN + MV+AGSKGS++NISQ+ ACVGQQ+VEG RIPFGF+ R+LPHF KD
Sbjct: 656 KSAEKSLSEHNNARQMVIAGSKGSSVNISQMAACVGQQSVEGNRIPFGFKNRSLPHFTKD 715

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D+ PE+RGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E VM 
Sbjct: 716 DHSPEARGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMA 775

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
            YD TVRNS GQ++Q  YGEDG+ G  VE Q  D +  +++ FE KYR D ++ R  L
Sbjct: 776 QYDGTVRNSAGQIVQFCYGEDGMDGGKVEPQPFDLMNCNNRDFEKKYRVDIADPRYKL 833



 Score =  143 bits (360), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/126 (55%), Positives = 85/126 (67%), Gaps = 4/126 (3%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ+VEG RIPFGF+ R+LPHF KDD+ PE+RGFVENSYL GLTP EFFFHAM
Sbjct: 684  SQMAACVGQQSVEGNRIPFGFKNRSLPHFTKDDHSPEARGFVENSYLRGLTPQEFFFHAM 743

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   +    YD   +N+      + V   Y     D
Sbjct: 744  GGREGLIDTAVKTAETGYIQRRLVKALEDVMAQYDGTVRNSA----GQIVQFCYGEDGMD 799

Query: 1129 PTRISP 1134
              ++ P
Sbjct: 800  GGKVEP 805



 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 85/166 (51%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VM  YD TVRNS GQ++Q  YGEDG+ G  VE Q  D +  +++ FE
Sbjct: 760 GYIQRRLVKALEDVMAQYDGTVRNSAGQIVQFCYGEDGMDGGKVEPQPFDLMNCNNRDFE 819

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KYR D ++ R      ++ +      +GD++++   +                      
Sbjct: 820 KKYRVDIADPRYKLTSLDQKI------AGDLLNDPGSQ---------------------- 851

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVI 756
                  S L+ E++ L E R  LRE +F SG+S   LP NL  +I
Sbjct: 852 -------SLLDGEFKYLAEARRILREDVFPSGDSRWPLPVNLKRLI 890



 Score = 70.5 bits (171), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 44/59 (74%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G D LS  A +NATLLFQ L++STL ++ V + Y+L+S AFEWL+GEI+ RF QA V
Sbjct: 926  VRGYDTLSILAQQNATLLFQILLKSTLSSRKVIDEYKLNSHAFEWLLGEIDQRFNQAIV 984



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 36/55 (65%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPD 1543
            V+ + + PRQI++PQ N P MGIVQD+L  VRK TKRD FL K      + + PD
Sbjct: 421  VQELCMVPRQIVSPQKNAPCMGIVQDSLCGVRKFTKRDNFLPKDFVMNILMWVPD 475


>gi|116874718|emb|CAJ75797.1| RNA polymerase I subunit B [Geosiphon pyriformis]
          Length = 649

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/383 (57%), Positives = 260/383 (67%), Gaps = 50/383 (13%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           +MNILM++P WDG++P+PCI+KP P+WTGKQ+ SLIIP  +N    HS HP++E S    
Sbjct: 317 VMNILMWVPEWDGRIPRPCIIKPIPMWTGKQILSLIIPKGINCDGFHSGHPENEKSD--- 373

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            ISPGDTKV++E G +L GI+CKK++GTS   L+H+   ELG E   +F    QTVVNNW
Sbjct: 374 -ISPGDTKVLIEDGQVLCGIICKKTVGTSQQGLVHVIMQELGSEAAKKFLNGCQTVVNNW 432

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G SIGIGDTIAD  T   I   I  AK  V E+I KA   +L+  PG         
Sbjct: 433 LLQHGFSIGIGDTIADKDTMETITQTIGAAKSRVQEIILKAQQDNLKCEPGM-------- 484

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+R++FE+ VNR LN ARD  G
Sbjct: 485 --------------------------------------TIRESFEHHVNRELNTARDSAG 506

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA++SL E NN+K MVV+GSKGS INISQ+ ACVGQQNVEGKRIPFGF+ RTLPHF KD
Sbjct: 507 RSAERSLREENNVKQMVVSGSKGSFINISQMSACVGQQNVEGKRIPFGFKFRTLPHFTKD 566

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D+ PESRGFVENSYL GLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E VMV
Sbjct: 567 DHSPESRGFVENSYLRGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMV 626

Query: 435 HYDCTVRNSVGQLIQLRYGEDGL 457
            YD TVRNS+G +IQ  YGEDG+
Sbjct: 627 KYDGTVRNSLGDVIQFCYGEDGM 649



 Score =  150 bits (379), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 82/102 (80%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF+ RTLPHF KDD+ PESRGFVENSYL GLTP+EFFFHAM
Sbjct: 535  SQMSACVGQQNVEGKRIPFGFKFRTLPHFTKDDHSPESRGFVENSYLRGLTPTEFFFHAM 594

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 595  GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSL 636



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/39 (71%), Positives = 33/39 (84%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
           GYIQRRL+KA+E VMV YD TVRNS+G +IQ  YGEDG+
Sbjct: 611 GYIQRRLVKALEDVMVKYDGTVRNSLGDVIQFCYGEDGM 649



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 39/55 (70%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPD 1543
            +  I + P+QI++PQ+N+PVMGIVQDTL AVRK TKRD FL +      + + P+
Sbjct: 272  ITEICMVPKQIVSPQSNKPVMGIVQDTLCAVRKFTKRDCFLSRDLVMNILMWVPE 326


>gi|50346868|gb|AAT75142.1| RNA polymerase 2 [Caenorhabditis brenneri]
          Length = 596

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/394 (57%), Positives = 279/394 (70%), Gaps = 16/394 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
            V+G D++SKQA  NATLL   L+RSTLCTK +  + +L++EAF+WL+GEIE RFQQA  Q
Sbjct: 207  VSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQ 266

Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-----VENSYLAGLTPSEFFF 1065
                VG    +    P         H+        + G      + N      TPS   F
Sbjct: 267  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVF 326

Query: 1066 ---HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
                A    E   D   K   T      L +VT NTAIYYDPDP+NTVI ED+E+V+++Y
Sbjct: 327  LTGPAAKDPEKAKDVLCKLEHTT-----LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFY 381

Query: 1123 EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1182
            EMPD D +R SPWLLRIELDRKRM DKKLTME I+++I+ GFG+D++ I+ DDNAEKLV 
Sbjct: 382  EMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVF 441

Query: 1183 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1242
            R+RI   +D   + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ PQTD K
Sbjct: 442  RLRIA-GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPQTDDK 500

Query: 1243 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1302
            KRIIIT  G FKA+ADW+LETDGT+L++VLSE+ +DPVRT SNDICEIF+VLGIEAVRK+
Sbjct: 501  KRIIITPEGGFKAVADWILETDGTALLRVLSEQQIDPVRTTSNDICEIFEVLGIEAVRKA 560

Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 1336
            +E+EM+ V+ F G YVNYRHLALLCDVMTAKGHL
Sbjct: 561  IEREMDNVISFDGSYVNYRHLALLCDVMTAKGHL 594



 Score =  169 bits (429), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 81/112 (72%), Positives = 96/112 (85%)

Query: 378 PESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYD 437
           PES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YD
Sbjct: 1   PESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYD 60

Query: 438 CTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
            TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE  +R + ++ +
Sbjct: 61  GTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMELTDTK 112



 Score =  167 bits (423), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 84/152 (55%), Positives = 105/152 (69%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKK
Sbjct: 350  LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKK 409

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+ GFG+D++T                            I+ DDNAEKLV 
Sbjct: 410  LTMEMIADRIHGGFGNDVHT----------------------------IYTDDNAEKLVF 441

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   +D   + +E+ VDKMEDD+FLRCIE
Sbjct: 442  RLRIA-GEDKGAEGQEEQVDKMEDDVFLRCIE 472



 Score =  128 bits (322), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/170 (42%), Positives = 100/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 42  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 101

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R + ++ + LR+ ++EDV+RE+  S D IS +E                        
Sbjct: 102 RDFRMELTDTKFLRKHYSEDVVREIQESLDGISLVE------------------------ 137

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 138 -----------SEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQK 176



 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/67 (65%), Positives = 52/67 (77%)

Query: 1044 PESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
            PES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET  +   L +   +  + YD
Sbjct: 1    PESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYD 60

Query: 1104 PDPQNTV 1110
               +N++
Sbjct: 61   GTVRNSL 67



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 41/50 (82%), Gaps = 3/50 (6%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 819
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHL
Sbjct: 545 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHL 594



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/35 (74%), Positives = 31/35 (88%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 550
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHL
Sbjct: 560 AIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHL 594


>gi|326431524|gb|EGD77094.1| polymerase II polypeptide A [Salpingoeca sp. ATCC 50818]
          Length = 1834

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/442 (49%), Positives = 284/442 (64%), Gaps = 65/442 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTH------P 125
           ++ MM +LM+ P WDG++P+P +LKPK LWTGKQ+ S+++P  +N+ + +S H      P
Sbjct: 557 KDDMMQLLMWYPNWDGRLPEPALLKPKELWTGKQLVSMVLPDKINLVQFYSQHDGSVDTP 616

Query: 126 DDEDSGPYQ-----WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVC 180
            D+D    +      I+  DT+V++++G L+ GILCKK++G  +  ++H+  +E GHE  
Sbjct: 617 RDKDGNVIEAEDATHITQHDTRVLIQNGKLISGILCKKTMGARANGVIHVIMMEHGHERA 676

Query: 181 GRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 240
            +FYGN+QTVVNNWLL+ G                                         
Sbjct: 677 RQFYGNVQTVVNNWLLIHG----------------------------------------- 695

Query: 241 EPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFEN 300
                HSIGIGD IAD  TY  I      A E V E+IQ A    +EP+PG+T+RQTFE 
Sbjct: 696 -----HSIGIGDAIADTHTYDTIDSEKAAANEKVNELIQDAQLDKIEPSPGHTIRQTFEA 750

Query: 301 QVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP 360
           +VN+ LN    KTGG+ +K+L+E+NN KAM  AGSKGS INISQ+IACV QQNVEGKRIP
Sbjct: 751 KVNKNLNQVIKKTGGAVQKALSEHNNFKAMSTAGSKGSEINISQIIACVSQQNVEGKRIP 810

Query: 361 FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGY 420
           FGFR R+LPHF+KDDYGP + GFV +SY+ GL P EFFFHAMGGREGLIDTAVKTAETGY
Sbjct: 811 FGFRHRSLPHFVKDDYGPHACGFVFSSYIQGLEPHEFFFHAMGGREGLIDTAVKTAETGY 870

Query: 421 IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDK 480
           IQRRL+K+ME + + YD TVRNS G L+QL YGEDG+ G  VE Q + T+ L +  FE +
Sbjct: 871 IQRRLVKSMEGLRLEYDGTVRNSTGDLVQLHYGEDGMDGALVESQSL-TLKLDNATFEKR 929

Query: 481 YRFDPSNERPTLRNVSSLRRVV 502
           +  + +N R       SLRR +
Sbjct: 930 FLTNVANTR-------SLRRFL 944



 Score =  335 bits (859), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 207/529 (39%), Positives = 295/529 (55%), Gaps = 58/529 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV- 1011
            V G+D +S  A E+ TL F C +RS L T  +   +RL+ EAFEW++GEIE+RF Q+Q  
Sbjct: 1033 VPGDDPISVAAQESTTLQFCCHLRSMLATNRLIHEHRLTREAFEWVLGEIEHRFAQSQAQ 1092

Query: 1012 ---------IACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-------VENSYL 1055
                       C+G+   +           TL  F +  Y  ++          + N   
Sbjct: 1093 PAEMVGPLAAQCLGEPTTQ----------MTLNTFHQAGYSAKNVTLGVPRLKEIINVSR 1142

Query: 1056 AGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVF-------LFQVTANTAIYYDPDPQN 1108
               TPS   F         +D      ET+ +          L  V   ++I +DPD +N
Sbjct: 1143 NPKTPSMLLF---------LDEQASDNETLALRCLYDLEYTPLSAVVKKSSICFDPDERN 1193

Query: 1109 TVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDL 1168
            T+I ED EF+  Y++ PD+ P  +SPW+LR+ELD  +MT + ++ + I EKI +     +
Sbjct: 1194 TIIQEDLEFLQDYFDDPDYHPEDLSPWVLRLELDSVQMTLRDVSCDMIEEKIESYLESTV 1253

Query: 1169 NCIFNDDNAEKL-VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIE 1227
             C++  + A K  V+RIR+   +    ++EE   D M  D  LR +E  +L ++ L+G+E
Sbjct: 1254 KCVYTTNAAAKQKVMRIRLTKVE----ENEEGMEDFMSADRLLRLVEERLLKNLHLKGVE 1309

Query: 1228 AIGKVYMHLPQTDSKKRI--IITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSN 1285
             I + Y+  P+T   +++     E+G F++ + W++ETDG+SL KVLS   VDP  + +N
Sbjct: 1310 EISRGYISKPETKEPEKLKRYYDENGTFQSKSGWIIETDGSSLAKVLSHPHVDPENSSTN 1369

Query: 1286 DICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1345
            DI E+FQV GIEA RK+VE E+  V+   G  VNYRHL+LLCD+MT KG LMAITRHGIN
Sbjct: 1370 DIVEVFQVFGIEAARKAVENEIINVVTSGGANVNYRHLSLLCDIMTNKGSLMAITRHGIN 1429

Query: 1346 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 1405
            RQ TGALMR SFEETVD+L++AAAHAE D MRGVSENI++G L  +GTG FDL +D +  
Sbjct: 1430 RQSTGALMRASFEETVDILLEAAAHAETDTMRGVSENIMLGNLAPVGTGYFDLFIDRDML 1489

Query: 1406 KDGI-----EIPLATGMMGGPAGMFFGSAATPSSIPGPPAWYPIHIAIS 1449
               I     ++     ++G   G   G  A   + P   A  P H A S
Sbjct: 1490 SQAITFRPTDLVGDDDILGAEEGDDLGEGA---ATPWTSARTPAHFAAS 1535



 Score =  160 bits (404), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 93/203 (45%), Positives = 120/203 (59%), Gaps = 25/203 (12%)

Query: 775  KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
            ++  + + RK+VE E+  V+   G  VNYRHL+LLCD+MT KG LMAITRHGINRQ TGA
Sbjct: 1376 QVFGIEAARKAVENEIINVVTSGGANVNYRHLSLLCDIMTNKGSLMAITRHGINRQSTGA 1435

Query: 835  LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI-- 892
            LMR SFEETVD+L++AAAHAE D MRGVSENI++G L  +GTG FDL +D +     I  
Sbjct: 1436 LMRASFEETVDILLEAAAHAETDTMRGVSENIMLGNLAPVGTGYFDLFIDRDMLSQAITF 1495

Query: 893  ---EIPLATGMMGGPAGMFFGS---------------AATPSSMSPQMTPWAQSTP--AY 932
               ++     ++G   G   G                AA+PS +  Q     Q TP  A+
Sbjct: 1496 RPTDLVGDDDILGAEEGDDLGEGAATPWTSARTPAHFAASPSIVGGQTPIMGQFTPDHAF 1555

Query: 933  NALMSPGAAMTPGGPGF---SPS 952
            +  +SPG +     PGF   SPS
Sbjct: 1556 DGTLSPGRSPVADSPGFGAMSPS 1578



 Score =  144 bits (364), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 105/175 (60%), Gaps = 6/175 (3%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+IACV QQNVEGKRIPFGFR R+LPHF+KDDYGP + GFV +SY+ GL P EFFFHAM
Sbjct: 793  SQIIACVSQQNVEGKRIPFGFRHRSLPHFVKDDYGPHACGFVFSSYIQGLEPHEFFFHAM 852

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +      + YD     TV     + V ++Y     D
Sbjct: 853  GGREGLIDTAVKTAETGYIQRRLVKSMEGLRLEYD----GTVRNSTGDLVQLHYGEDGMD 908

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDL--NCIFNDDNAEKLV 1181
               +    L ++LD      + LT  A +  +     +D+  +   + D A++L+
Sbjct: 909  GALVESQSLTLKLDNATFEKRFLTNVANTRSLRRFLTEDVVDDLAASQDAAQQLL 963



 Score =  119 bits (298), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/123 (52%), Positives = 82/123 (66%), Gaps = 6/123 (4%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            +VE E+  V+   G  VNYRHL+LLCD+MT KG LMAITRHGINRQ TGALMR SFEETV
Sbjct: 1386 AVENEIINVVTSGGANVNYRHLSLLCDIMTNKGSLMAITRHGINRQSTGALMRASFEETV 1445

Query: 576  DVLMDAAAHAEADPMRGYIQRRLIKAMESVMVHY-DCTV-RNSVGQLIQLR----YGEDG 629
            D+L++AAAHAE D MRG  +  ++  +  V   Y D  + R+ + Q I  R     G+D 
Sbjct: 1446 DILLEAAAHAETDTMRGVSENIMLGNLAPVGTGYFDLFIDRDMLSQAITFRPTDLVGDDD 1505

Query: 630  LCG 632
            + G
Sbjct: 1506 ILG 1508



 Score =  106 bits (264), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 105/219 (47%), Gaps = 50/219 (22%)

Query: 592  GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
            GYIQRRL+K+ME + + YD TVRNS G L+QL YGEDG+ G  VE Q + T+ L +  FE
Sbjct: 869  GYIQRRLVKSMEGLRLEYDGTVRNSTGDLVQLHYGEDGMDGALVESQSL-TLKLDNATFE 927

Query: 652  DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             ++  + +N R LRR   EDV+ +L  S D   +L    +D                   
Sbjct: 928  KRFLTNVANTRSLRRFLTEDVVDDLAASQDAAQQL----LD------------------- 964

Query: 712  MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQRW--------- 762
                        E+E+L  DR+ LR++   G   VVLP NL  +++  Q+          
Sbjct: 965  ------------EYEQLIRDRDELRKVHDRGNETVVLPVNLHRLLWNAQKLFHIDGTQPS 1012

Query: 763  ---KLWGNENLRFLCKIIFVLSVRK--SVEKEMNTVLQF 796
                L+   ++  L K + V+      SV  + +T LQF
Sbjct: 1013 DLNPLYALTSINALTKKLIVVPGDDPISVAAQESTTLQF 1051



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 47/187 (25%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L  V   ++I +DPD +NT+I ED EF+  Y++ PD+ P  +SPW+LR+ELD  +MT + 
Sbjct: 1176 LSAVVKKSSICFDPDERNTIIQEDLEFLQDYFDDPDYHPEDLSPWVLRLELDSVQMTLRD 1235

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL-V 1647
            ++ + I EKI +                  +E+            + C++  + A K  V
Sbjct: 1236 VSCDMIEEKIES-----------------YLEST-----------VKCVYTTNAAAKQKV 1267

Query: 1648 LRIRIMNSDDSKMQDEEDAVDKMEDD-------------MFLRCIEETDRSFV-KVDFVE 1693
            +RIR+   +    ++EE   D M  D             + L+ +EE  R ++ K +  E
Sbjct: 1268 MRIRLTKVE----ENEEGMEDFMSADRLLRLVEERLLKNLHLKGVEEISRGYISKPETKE 1323

Query: 1694 PKDLVEW 1700
            P+ L  +
Sbjct: 1324 PEKLKRY 1330



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            VE I +  R I+TPQ NRPVMGI+QDTLTA+RK+T RD F++K
Sbjct: 515  VEEIMMVQRNILTPQANRPVMGIIQDTLTAIRKLTFRDTFIEK 557



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 9   ITANHVSNTSVYAWYVVPYPYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGS 68
           +TA  +S   +Y   +    + ++  LG DP   RPDW+++T LPVPPL+VRP+V M   
Sbjct: 211 VTARTMSTEEIYEL-LHNISHADAEALGFDPHHTRPDWLMITCLPVPPLAVRPSVQMGSG 269

Query: 69  ARNQEQMMN 77
            R+ + + N
Sbjct: 270 GRSHDDLTN 278


>gi|262303435|gb|ACY44310.1| RNA polymerase largest subunit [Dinothrombium pandorae]
          Length = 268

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/298 (69%), Positives = 229/298 (76%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           QEQMMN+LMFLP WDGKMP P ILKP PLWTGKQ+FSLIIPGNVN+ R+HSTHPDDED G
Sbjct: 17  QEQMMNLLMFLPPWDGKMPMPAILKPTPLWTGKQLFSLIIPGNVNLIRSHSTHPDDEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++E G LL GI+C K++G+SSGSL+H+ F E GHEV G+FYG+IQTVV
Sbjct: 77  PYKWISPGDTKVLIEQGELLSGIVCSKTVGSSSGSLMHVVFNEHGHEVAGQFYGHIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGH+IGIGDT ADP TY EIQ  I+KAK+DVIEVI+KAHN +LEPTPG      
Sbjct: 137 NNWLLLEGHTIGIGDTFADPATYSEIQATIRKAKQDVIEVIEKAHNDELEPTPG------ 190

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 191 ----------------------------------------NTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTG SA++SL+EYNN KAMVVAGSKGS INISQVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 211 KTGASAQRSLSEYNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLP 268



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 31/38 (81%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            + G   ++   +QVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 231  VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLP 268


>gi|356605930|gb|AET24996.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 18
            KK-2011]
          Length = 598

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/408 (54%), Positives = 281/408 (68%), Gaps = 42/408 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+G D++SKQA  NATLL   L+RSTLCTK +    +L++EAF+WL+GEIE RFQQA   
Sbjct: 210  VSGNDEISKQAQYNATLLMNILLRSTLCTKKLCTTAKLNTEAFDWLLGEIETRFQQAIAQ 269

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  +  Q+                 V  K +  G  R + + +  K    P    F
Sbjct: 270  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVF 329

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            +  +             A    E   D   K   T      L +VT NTAIYYDPDP+NT
Sbjct: 330  LTGA-------------AAKDPEKAKDVLCKLEHTT-----LKKVTCNTAIYYDPDPKNT 371

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            VI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKKLTME I+++I+ GFG+D++
Sbjct: 372  VITEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVH 431

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV R+RI   D+     +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI
Sbjct: 432  TIYTDDNAEKLVFRLRI-TGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAI 490

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYM+ P TD KKRIIIT  G FK++ADW+LETDGT+L++VLSER +DPVRT SNDICE
Sbjct: 491  SKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICE 550

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1337
            IF+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLM
Sbjct: 551  IFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLM 598



 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 87/122 (71%), Positives = 102/122 (83%)

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV
Sbjct: 1   DYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 60

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLRN 494
           +YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE  +R D ++ +   +N
Sbjct: 61  NYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKN 120

Query: 495 VS 496
            S
Sbjct: 121 YS 122



 Score =  166 bits (420), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/152 (55%), Positives = 104/152 (68%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKK
Sbjct: 353  LKKVTCNTAIYYDPDPKNTVITEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKK 412

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+ GFG+D++T                            I+ DDNAEKLV 
Sbjct: 413  LTMEMIADRIHGGFGNDVHT----------------------------IYTDDNAEKLVF 444

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   D+     +E+ VDKMEDD+FLRCIE
Sbjct: 445  RLRI-TGDEKGADTQEEQVDKMEDDVFLRCIE 475



 Score =  131 bits (330), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 100/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 45  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 104

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++ + LR+ ++EDV+RE+  S D IS +E                        
Sbjct: 105 RDFRMDLTDNKFLRKNYSEDVVREIQESQDGISLVE------------------------ 140

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 141 -----------SEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQK 179



 Score =  100 bits (249), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 55/70 (78%)

Query: 1041 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAI 1100
            DYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET  +   L +   +  +
Sbjct: 1    DYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 60

Query: 1101 YYDPDPQNTV 1110
             YD   +N++
Sbjct: 61   NYDGTVRNSL 70



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 42/51 (82%), Gaps = 3/51 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 820
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLM
Sbjct: 548 ICEIFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLM 598



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 551
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLM
Sbjct: 563 AIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLM 598


>gi|358030890|dbj|BAL15354.1| RNA polymerase II largest subunit, partial [Basidiobolus
           haptosporus]
          Length = 976

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/410 (54%), Positives = 269/410 (65%), Gaps = 50/410 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           +MNILM +  W+G +  P ILKP PLWTGKQ+ S++IP  +N    HS HPDDE S    
Sbjct: 482 VMNILMLVDDWNGVIXTPAILKPLPLWTGKQLLSMVIPKGINCITYHSAHPDDEKSD--- 538

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            ISPGDTKVVVE G L+ GI+CKK++G S+G  +H    E G E+  +F    Q VVN W
Sbjct: 539 -ISPGDTKVVVEDGELISGIVCKKTVGASNGGWVHTIMNEHGPEIAKKFLCGTQAVVNYW 597

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G                                               SIGIGDTI
Sbjct: 598 LLQNGF----------------------------------------------SIGIGDTI 611

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD +T   I   I  AK+ V E+I  A    LE  PG T+R+TFE++V+R LN ARD +G
Sbjct: 612 ADEKTAEHITETIDSAKQRVSEIILAAQQDKLECAPGMTIRETFESKVSRELNRARDHSG 671

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA++SL E NN+K MVV+GSKGS +NISQ+ ACVGQQ+VEGKRIPFGF+ RTLPHF KD
Sbjct: 672 QSAERSLKEENNVKQMVVSGSKGSFVNISQMSACVGQQDVEGKRIPFGFKFRTLPHFTKD 731

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DYGPES+GFVENSYL  LTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E VMV
Sbjct: 732 DYGPESKGFVENSYLRRLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMV 791

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            YD TVRNS+G +IQ  YGEDG+ G  VE Q +D++ +S+ KFE  Y+ D
Sbjct: 792 KYDGTVRNSLGNIIQFCYGEDGMDGCFVEKQTLDSIXMSNDKFEKIYKVD 841



 Score =  148 bits (373), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ+VEGKRIPFGF+ RTLPHF KDDYGPES+GFVENSYL  LTP EFFFHAM
Sbjct: 700  SQMSACVGQQDVEGKRIPFGFKFRTLPHFTKDDYGPESKGFVENSYLRRLTPQEFFFHAM 759

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 760  GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSL 801



 Score =  101 bits (251), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 92/170 (54%), Gaps = 34/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD TVRNS+G +IQ  YGEDG+ G  VE Q +D++ +S+ KFE
Sbjct: 776 GYIQRRLVKALEDVMVKYDGTVRNSLGNIIQFCYGEDGMDGCFVEKQTLDSIXMSNDKFE 835

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             Y+ D  ++    + F   VL                             FN  +L+++
Sbjct: 836 KIYKVDVMDK---EKGFKPGVLE----------------------------FN--ILKDV 862

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFS-SGESNVVLPCNLMEVIFILQ 760
            G+      L++E+ +LCEDR  LRE  S SG+ +  LP NL  +I+  Q
Sbjct: 863 EGNDSTQMMLDEEYRQLCEDRRVLREFISTSGDQSWPLPGNLKRLIWNAQ 912



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 31/138 (22%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            ++ I + P+QII+PQ+N+PVMGIVQDTL  VRK T RD F+DK                 
Sbjct: 437  IQEICMVPKQIISPQSNKPVMGIVQDTLCGVRKFTNRDCFMDKALV-------------- 482

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLR-IELDRKRMTDKKLTMEAISEKIN-----AGF 1602
                   +N+   + D++    +P +L+ + L     T K+L    I + IN     +  
Sbjct: 483  -------MNILMLVDDWNGVIXTPAILKPLPL----WTGKQLLSMVIPKGINCITYHSAH 531

Query: 1603 GDDLNTPLSPTDKKLTME 1620
             DD  + +SP D K+ +E
Sbjct: 532  PDDEKSDISPGDTKVVVE 549



 Score = 43.9 bits (102), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLV 984
           V G D+LS +A  NATLL+QCL+RSTL TK V
Sbjct: 944 VRGTDKLSHEAQLNATLLYQCLLRSTLSTKRV 975


>gi|45935333|gb|AAS79688.1| RNA polymerase II large subunit [Ephedra viridis]
          Length = 1013

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/441 (51%), Positives = 288/441 (65%), Gaps = 65/441 (14%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+   +DGK+P P ILKP+P+WTGKQVF+LIIP  +N+ R  + H ++ D G   
Sbjct: 481 FMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKQINLVRYSAWH-NESDRG--- 536

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            ++ GDT V +E G ++ G LCKK+LG SSGSL+H+ + E+G +   +F G+ Q +VN W
Sbjct: 537 HLTLGDTVVRIEKGEVITGTLCKKTLGASSGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 596

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQK--AHNMDLEPTPGHSIGIGD 252
           LL +G S+GIGDTIAD  T   I   I+ AK  V E+I+K  AH ++ EP          
Sbjct: 597 LLQQGFSMGIGDTIADATTMDTINETIQDAKIKVQELIEKYMAHKLEQEP---------- 646

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
                                                 G TL ++FENQVN++LN ARD 
Sbjct: 647 --------------------------------------GRTLLESFENQVNQVLNKARDD 668

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA++SL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIP+GF+ RTLPHF+
Sbjct: 669 AGNSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFQGRTLPHFV 728

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDD GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +
Sbjct: 729 KDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDI 788

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNERP 490
           MV YD TVRNS+G +IQ  YGEDG+    +E Q++D + +  K+F++  K+     N  P
Sbjct: 789 MVKYDATVRNSLGDVIQFLYGEDGMDAVRIESQKLDHLKMKKKEFDETFKHELGQENWHP 848

Query: 491 T---------LRNVSSLRRVV 502
           T         ++N+S  + V+
Sbjct: 849 TYMLPEMADDIKNISEFQDVL 869



 Score =  151 bits (381), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 82/102 (80%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF+ RTLPHF+KDD GPESRGFVENSYL GLTP EFFFHAM
Sbjct: 699  SQMTACVGQQNVEGKRIPYGFQGRTLPHFVKDDKGPESRGFVENSYLRGLTPQEFFFHAM 758

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N++
Sbjct: 759  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDATVRNSL 800



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    +E Q++D + +  K+F+
Sbjct: 775 GYIQRRLVKAMEDIMVKYDATVRNSLGDVIQFLYGEDGMDAVRIESQKLDHLKMKKKEFD 834

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + ++ +   E          +L E+      ISE +  +V                    
Sbjct: 835 ETFKHELGQENW----HPTYMLPEMADDIKNISEFQDVLV-------------------- 870

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
                       E++KL  DR  L  EI  +GE++  LP NL  +I+  Q+
Sbjct: 871 -----------AEYKKLQLDRRQLGMEIAPTGENSWPLPVNLKRLIWNAQK 910



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D LS +A +NATL F  L+RS   +K V + Y L+ EAF+W++GE+ENRF Q+   
Sbjct: 941  VPGDDPLSFEAQKNATLFFNILLRSVFASKRVLKEYHLTREAFDWVIGEVENRFLQSLVA 1000

Query: 1010 --QVIACVGQQNV 1020
              ++I CV  Q++
Sbjct: 1001 PGEMIGCVAAQSI 1013



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 38/49 (77%), Gaps = 1/49 (2%)

Query: 1494 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
            + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F++K V  N  ++++
Sbjct: 441  MVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 489



 Score = 45.1 bits (105), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 41/53 (77%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
           EE  +LG DP+FARPDWM++ VLP+PP  VRP+V+M+ ++R+++ + + L  +
Sbjct: 149 EECQMLGFDPQFARPDWMILQVLPIPPPPVRPSVMMNSTSRSEDDLTHQLAMI 201


>gi|157841380|gb|ABV83144.1| RNA polymerase 2 [Teratorhabditis palmarum]
          Length = 633

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/401 (55%), Positives = 282/401 (70%), Gaps = 24/401 (5%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V+GED++SKQA  NATLL   L+RSTLC+K VA  ++L++EAF+WL+GEIE+RF+QA   
Sbjct: 232  VSGEDRISKQAQYNATLLMNILIRSTLCSKRVASMHKLNNEAFDWLLGEIEHRFKQAIAX 291

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLP--HFIKDDYGPESRGF-----VENSYLAGLTPSEFFF 1065
                   +  + +     + TL   HF        + G      + N      TPS   +
Sbjct: 292  XXXXXGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTIY 351

Query: 1066 HAMGGREGLIDTAVKTAETVNVL------VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
                    L   A + AE    +        L +VT+NTAIYYDPDP+NT+I ED+E+V 
Sbjct: 352  --------LTGAAARDAERAKEVQCRLEHTTLRKVTSNTAIYYDPDPRNTIIQEDEEWVA 403

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
             YYEMPD  P+ +SPWLLRIELDRKRMTDK+LTMEAI+ +I  GFGDDL+ I+ DDNA+ 
Sbjct: 404  FYYEMPDSLPSNVSPWLLRIELDRKRMTDKRLTMEAIASRITQGFGDDLHTIYTDDNADS 463

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LV RIRI + +     D E+ ++KMEDDMFLR +E NML+++TLQGIE I KVYMH P T
Sbjct: 464  LVFRIRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGIEQISKVYMHKPTT 520

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            D KKR +IT  G+F++IA+WLLETDGTSL+ VLS+ +VDPVRT+SNDICEIF+VLGIEAV
Sbjct: 521  DDKKRTVITPEGDFRSIAEWLLETDGTSLLDVLSQPNVDPVRTYSNDICEIFEVLGIEAV 580

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAIT 1340
            RK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAIT
Sbjct: 581  RKAIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAIT 621



 Score =  223 bits (569), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 106/143 (74%), Positives = 123/143 (86%), Gaps = 1/143 (0%)

Query: 353 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 412
           NVEGKRIPFGFR R+LPHFI+DDYGPES+GFVENSYLAGLT +EFFFHAMGGREGLIDTA
Sbjct: 1   NVEGKRIPFGFRHRSLPHFIQDDYGPESKGFVENSYLAGLTAAEFFFHAMGGREGLIDTA 60

Query: 413 VKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVAL 472
           VKTAETGYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL    VE Q + T+ L
Sbjct: 61  VKTAETGYIQRRLIKAMESVMVNYDGTVRNSISQMVQLRYGEDGLDAVWVEGQTMPTMRL 120

Query: 473 SHKKFEDKYRFDPSNERPTLRNV 495
            +  FED ++ D ++E+ TLR +
Sbjct: 121 KNSVFEDLFKLDLTDEK-TLRKL 142



 Score =  163 bits (412), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/153 (53%), Positives = 102/153 (66%), Gaps = 31/153 (20%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT+NTAIYYDPDP+NT+I ED+E+V  YYEMPD  P+ +SPWLLRIELDRKRMTDK+
Sbjct: 375  LRKVTSNTAIYYDPDPRNTIIQEDEEWVAFYYEMPDSLPSNVSPWLLRIELDRKRMTDKR 434

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTMEAI+ +I  GFGDDL+T                            I+ DDNA+ LV 
Sbjct: 435  LTMEAIASRITQGFGDDLHT----------------------------IYTDDNADSLVF 466

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEE 1681
            RIRI + +     D E+ ++KMEDDMFLR +E+
Sbjct: 467  RIRIRSENKG---DTEETIEKMEDDMFLRAVEQ 496



 Score =  141 bits (355), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 75/92 (81%)

Query: 1019 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 1078
            NVEGKRIPFGFR R+LPHFI+DDYGPES+GFVENSYLAGLT +EFFFHAMGGREGLIDTA
Sbjct: 1    NVEGKRIPFGFRHRSLPHFIQDDYGPESKGFVENSYLAGLTAAEFFFHAMGGREGLIDTA 60

Query: 1079 VKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            VKTAET  +   L +   +  + YD   +N++
Sbjct: 61   VKTAETGYIQRRLIKAMESVMVNYDGTVRNSI 92



 Score =  137 bits (346), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 102/170 (60%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL    VE Q + T+ L +  FE
Sbjct: 67  GYIQRRLIKAMESVMVNYDGTVRNSISQMVQLRYGEDGLDAVWVEGQTMPTMRLKNSVFE 126

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           D ++ D ++E+ LR+++ E+V+R+L+GS   + E E                        
Sbjct: 127 DLFKLDLTDEKTLRKLYTEEVVRDLLGSTVALKEAE------------------------ 162

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                      +EW++L EDR  LR+IF  G++ VVLPCNL  +I+  Q+
Sbjct: 163 -----------EEWQQLEEDRRLLRKIFPKGDNKVVLPCNLQRLIWNAQK 201



 Score = 78.6 bits (192), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 45/54 (83%), Gaps = 3/54 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAIT 823
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAIT
Sbjct: 568 ICEIFEVLGIEAVRKAIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAIT 621



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/39 (76%), Positives = 35/39 (89%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAIT 554
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAIT
Sbjct: 583 AIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAIT 621


>gi|356605952|gb|AET25007.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 10
            KK-2011]
          Length = 599

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/394 (57%), Positives = 279/394 (70%), Gaps = 16/394 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
            V+G D++SKQA  NATLL   L+RSTLCTK +  + +L++EAF+WL+GEIE+RFQQA  Q
Sbjct: 212  VSGNDEISKQAQXNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIESRFQQAIAQ 271

Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-----VENSYLAGLTPSEFFF 1065
                VG    +    P         H+        + G      + N      TPS   F
Sbjct: 272  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVF 331

Query: 1066 ---HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
                A    E   D   K   T      L +VT NTAIYYDPDP+NTVI ED+E+V+++Y
Sbjct: 332  LTGAAAKDPEKAKDVLCKLEHTT-----LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFY 386

Query: 1123 EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1182
            EMPD D +R SPWLLRIELDRKRM DKKLTME I+++I+ GFG+D++ I+ DDNA+KLV 
Sbjct: 387  EMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNADKLVF 446

Query: 1183 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1242
            R+RI   +D   + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD K
Sbjct: 447  RLRIA-GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDK 505

Query: 1243 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1302
            KRIIIT  G FKA+ADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK+
Sbjct: 506  KRIIITPEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKA 565

Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 1336
            +E+EM+ V+ F G YVNYRHLALLCDVMTAKGHL
Sbjct: 566  IEREMDNVISFDGSYVNYRHLALLCDVMTAKGHL 599



 Score =  185 bits (470), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 104/124 (83%)

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV
Sbjct: 1   KDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 60

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE  +R D ++ +   
Sbjct: 61  MVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFIR 120

Query: 493 RNVS 496
           +N S
Sbjct: 121 KNYS 124



 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/152 (54%), Positives = 105/152 (69%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKK
Sbjct: 355  LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKK 414

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+ GFG+D++T                            I+ DDNA+KLV 
Sbjct: 415  LTMEMIADRIHGGFGNDVHT----------------------------IYTDDNADKLVF 446

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   +D   + +E+ VDKMEDD+FLRCIE
Sbjct: 447  RLRIA-GEDKGAEGQEEQVDKMEDDVFLRCIE 477



 Score =  131 bits (329), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/170 (42%), Positives = 100/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 47  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 106

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++ + +R+ ++EDV+RE+  S D IS +E                        
Sbjct: 107 RDFRMDLTDNKFIRKNYSEDVVREIQESADGISLVE------------------------ 142

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 143 -----------SEWTQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQK 181



 Score =  104 bits (260), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 57/72 (79%)

Query: 1039 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANT 1098
            KDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET  +   L +   + 
Sbjct: 1    KDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 60

Query: 1099 AIYYDPDPQNTV 1110
             + YD   +N++
Sbjct: 61   MVNYDGTVRNSL 72



 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 41/50 (82%), Gaps = 3/50 (6%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 819
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHL
Sbjct: 550 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHL 599



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/35 (74%), Positives = 31/35 (88%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 550
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHL
Sbjct: 565 AIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHL 599


>gi|262303459|gb|ACY44322.1| RNA polymerase largest subunit [Prokoenenia wheeleri]
          Length = 654

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/299 (68%), Positives = 231/299 (77%), Gaps = 46/299 (15%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           +++ MMNILM+LPIW+GKMP P ILKPKPLWTGKQVFSLIIPGNVN+ RTH THPD+ED 
Sbjct: 16  DKDAMMNILMYLPIWNGKMPVPAILKPKPLWTGKQVFSLIIPGNVNLIRTHFTHPDEEDD 75

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV +EHG L  GI+CKK++G+SSGSL+H+ F ELG EV G FYG+IQTV
Sbjct: 76  GPYKWISPGDTKVFIEHGELTSGIVCKKTVGSSSGSLMHVVFAELGQEVAGLFYGHIQTV 135

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN WLLLEGH+IGIGDTIADPQTY++IQ  IKKAK+DVIEVI+KAHN +LEPTPG     
Sbjct: 136 VNYWLLLEGHTIGIGDTIADPQTYIDIQNTIKKAKQDVIEVIEKAHNDELEPTPG----- 190

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
                                                    NTLRQTFENQVNRILNDAR
Sbjct: 191 -----------------------------------------NTLRQTFENQVNRILNDAR 209

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           DKTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 210 DKTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLP 268



 Score =  244 bits (623), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 138/227 (60%), Positives = 153/227 (67%), Gaps = 32/227 (14%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V GED+LS QANENATLLF+ L+RSTLC+K VAE +RLSSEAFEWL+GEI+ RF QAQV 
Sbjct: 454  VPGEDRLSIQANENATLLFRGLLRSTLCSKRVAEEFRLSSEAFEWLLGEIDTRFNQAQVQ 513

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
               G   V  K +  G  +  L   I     P+             TPS   F       
Sbjct: 514  PXAG---VSAKNVTLGVPR--LKEIINISKKPK-------------TPSLTVF------- 548

Query: 1073 GLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD 1126
             L   A + AE   +VL       L +VTANTAIYYDP PQNTVI EDQEFVNVYYEMPD
Sbjct: 549  -LTGAAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPHPQNTVIAEDQEFVNVYYEMPD 607

Query: 1127 FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFN 1173
            FDP+RISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFN
Sbjct: 608  FDPSRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFN 654



 Score =  157 bits (398), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 73/79 (92%), Positives = 75/79 (94%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDP PQNTVI EDQEFVNVYYEMPDFDP+RISPWLLRIELDRKRMTDKK
Sbjct: 572  LRKVTANTAIYYDPHPQNTVIAEDQEFVNVYYEMPDFDPSRISPWLLRIELDRKRMTDKK 631

Query: 1589 LTMEAISEKINAGFGDDLN 1607
            LTME I+EKINAGFGDDLN
Sbjct: 632  LTMEQIAEKINAGFGDDLN 650



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/154 (48%), Positives = 94/154 (61%), Gaps = 35/154 (22%)

Query: 604 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERQ 663
           SVM+ YD TVRN+VGQLIQLRYGEDGL G AVE Q + T+  S+K FE K+RFD ++ER 
Sbjct: 307 SVMITYDGTVRNAVGQLIQLRYGEDGLDGVAVEFQSLPTLKPSNKAFEKKFRFDATSERY 366

Query: 664 LRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEK 723
           LR+IF EDV+RELMGS   ++++E+E      W+ L+R                      
Sbjct: 367 LRKIFTEDVVRELMGSSTALTDIEQE------WETLKR---------------------- 398

Query: 724 EWEKLCEDREALREIFSSGESNVVLPCNLMEVIF 757
                  DRE LR IF +G+S VVLPCNL   IF
Sbjct: 399 -------DRELLRNIFPTGDSKVVLPCNLQRXIF 425



 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 62/97 (63%), Gaps = 10/97 (10%)

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVM+ YD TVRN+VGQLIQLRYGEDGL G AVE Q + T+  S+K FE K+RFD ++ER 
Sbjct: 307 SVMITYDGTVRNAVGQLIQLRYGEDGLDGVAVEFQSLPTLKPSNKAFEKKFRFDATSER- 365

Query: 491 TLRNVSSLRRVVNS---KPLLIGCWKLTSVEKEMNTV 524
                  LR++      + L+     LT +E+E  T+
Sbjct: 366 ------YLRKIFTEDVVRELMGSSTALTDIEQEWETL 396



 Score = 60.8 bits (146), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 27/27 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            +QVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLP 268


>gi|157841474|gb|ABV83203.1| RNA polymerase 2 [Oscheius tipulae]
          Length = 446

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/412 (56%), Positives = 288/412 (69%), Gaps = 42/412 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V GED++S+QA  NATLL   L+RSTLC+K +A  ++L+ EAF+WL+GEIE RF+ A   
Sbjct: 54   VGGEDRISRQAQFNATLLMNILLRSTLCSKKMATTHKLNQEAFDWLLGEIETRFKSAIAQ 113

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  +  Q+                 V  K +  G  R + + +  K    P    F
Sbjct: 114  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVF 173

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            ++ S             A    E   D   K   T      L +VTANTAIYYDPD +NT
Sbjct: 174  LQGS-------------AAKDAEKAKDVLCKLEHTT-----LRKVTANTAIYYDPDVRNT 215

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
             I ED+E+V+++YEMPDFDPTR SPWLLR+ELDR+RMTDKKL+ME I++KI+AGFGDDLN
Sbjct: 216  CIEEDEEWVSIFYEMPDFDPTRSSPWLLRLELDRRRMTDKKLSMEQIADKIHAGFGDDLN 275

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV RIRI N  D K+ +EE  +DKMEDDMFLRCIE+NMLSD+TLQGI +I
Sbjct: 276  VIYTDDNAEKLVFRIRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGISSI 334

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYM+ P TD KK++IIT  G+FK I+DW+LETDGT+L++VLSE  +DP +T SNDICE
Sbjct: 335  AKVYMYKPNTDDKKKVIITPEGDFKHISDWILETDGTALLRVLSEPSIDPAKTTSNDICE 394

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 1341
            IF+VLGIEAVRKS+EKEMN V+ F G YVNYRHLALLCDVMTAKGHLMA TR
Sbjct: 395  IFEVLGIEAVRKSIEKEMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAXTR 446



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 108/152 (71%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPD +NT I ED+E+V+++YEMPDFDPTR SPWLLR+ELDR+RMTDKK
Sbjct: 197  LRKVTANTAIYYDPDVRNTCIEEDEEWVSIFYEMPDFDPTRSSPWLLRLELDRRRMTDKK 256

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L+                            ME I++KI+AGFGDDLN I+ DDNAEKLV 
Sbjct: 257  LS----------------------------MEQIADKIHAGFGDDLNVIYTDDNAEKLVF 288

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRI N  D K+ +EE  +DKMEDDMFLRCIE
Sbjct: 289  RIRITNQGDDKLAEEEQ-IDKMEDDMFLRCIE 319



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/55 (72%), Positives = 45/55 (81%), Gaps = 3/55 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 824
           +C+I  VL   +VRKS+EKEMN V+ F G YVNYRHLALLCDVMTAKGHLMA TR
Sbjct: 392 ICEIFEVLGIEAVRKSIEKEMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAXTR 446



 Score = 73.9 bits (180), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/40 (82%), Positives = 35/40 (87%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 555
           S+EKEMN V+ F G YVNYRHLALLCDVMTAKGHLMA TR
Sbjct: 407 SIEKEMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAXTR 446


>gi|262303433|gb|ACY44309.1| RNA polymerase largest subunit [Craterostigmus tasmanianus]
          Length = 268

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/299 (69%), Positives = 233/299 (77%), Gaps = 46/299 (15%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           +++Q+MN+LMFLPIWDGKMP P I KPKPLWTGKQ+F+LIIPGNVN+ RTHSTHPDDED 
Sbjct: 16  DKDQVMNLLMFLPIWDGKMPMPAIFKPKPLWTGKQIFTLIIPGNVNVIRTHSTHPDDEDE 75

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           GPY+WISPGDTKV+VEHG L+ GILCKK+LGTS+GSLLHI  LELG ++ G+FY  IQTV
Sbjct: 76  GPYKWISPGDTKVLVEHGELISGILCKKTLGTSAGSLLHIVMLELGWDMAGKFYWYIQTV 135

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           +N WLLLEGHSIGIGDTIAD QTY EIQ +IKKAK+DVIEVI+KAHN +LEPTPG     
Sbjct: 136 INTWLLLEGHSIGIGDTIADLQTYNEIQNSIKKAKQDVIEVIEKAHNEELEPTPG----- 190

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
                                                    NTLRQTFENQVNRILNDAR
Sbjct: 191 -----------------------------------------NTLRQTFENQVNRILNDAR 209

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           DKTGGSA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 210 DKTGGSAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLP 268



 Score = 60.8 bits (146), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 30/36 (83%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            G   ++   +QVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 233  GAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLP 268


>gi|170652137|gb|ACB21845.1| RNA polymerase II [Melipona solani]
          Length = 226

 Score =  425 bits (1093), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/272 (76%), Positives = 219/272 (80%), Gaps = 46/272 (16%)

Query: 77  NILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWI 136
           NI MFLP WDGKMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WI
Sbjct: 1   NIXMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWI 60

Query: 137 SPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLL 196
           SPGDTKV+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLL
Sbjct: 61  SPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLL 120

Query: 197 LEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIAD 256
           LEGHSIGIGDTIADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG           
Sbjct: 121 LEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG----------- 169

Query: 257 PQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGS 316
                                              NTLRQTFENQVNRILNDARDKTGGS
Sbjct: 170 -----------------------------------NTLRQTFENQVNRILNDARDKTGGS 194

Query: 317 AKKSLTEYNNLKAMVVAGSKGSNINISQVIAC 348
           AKKSLTEYNNLKAMVV+GSKGSNINISQVIAC
Sbjct: 195 AKKSLTEYNNLKAMVVSGSKGSNINISQVIAC 226


>gi|120561223|gb|ABM26997.1| RNA polymerase II largest subunit, partial [Gigaspora gigantea]
          Length = 1039

 Score =  424 bits (1091), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/408 (54%), Positives = 268/408 (65%), Gaps = 51/408 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTR-THSTHPDDEDSGPY 133
           +MNILM++  WDG++P PCILKP PLWTGKQ+ S+IIP  +N     HS HP++E S   
Sbjct: 491 VMNILMWVLDWDGRLPIPCILKPIPLWTGKQILSMIIPKGINSDNLRHSGHPENEHSD-- 548

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
             ISPGDTKV++E G LL GI+CKK++G +   L+H+   E+G E    F    Q VVN 
Sbjct: 549 --ISPGDTKVLIEDGELLCGIVCKKTVGATHQGLVHVIMNEMGPEKAKDFLNGCQAVVNQ 606

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL  G SIGIGDTIAD +T   I   I  AK  V E+I +A    LE  PG        
Sbjct: 607 WLLQNGFSIGIGDTIADDETMKNITNTISNAKSRVAEIIGEAQQDKLECAPGM------- 659

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
                                                  T+R+TFE++VN+ LN ARD  
Sbjct: 660 ---------------------------------------TIRETFEHKVNKELNTARDAA 680

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G SA++SL E NN+K MV+AGSKGS INISQ+ ACVGQQNVEGKRIPFGF+ RTLPHF K
Sbjct: 681 GKSAEQSLKEENNVKQMVIAGSKGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTK 740

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DD+ PESRGFVEN YL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E VM
Sbjct: 741 DDHSPESRGFVENCYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVM 800

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKY 481
           V YD TVRNS+G ++Q  YGEDG+    VE Q  DT+ +++ +F++KY
Sbjct: 801 VKYDGTVRNSLGDIVQFCYGEDGMDACFVEPQTFDTLPMNNAEFDNKY 848



 Score =  149 bits (376), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 80/102 (78%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF+ RTLPHF KDD+ PESRGFVEN YL GLTP EFFFHAM
Sbjct: 710  SQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHSPESRGFVENCYLRGLTPQEFFFHAM 769

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 770  GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSL 811



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 108/213 (50%), Gaps = 40/213 (18%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD TVRNS+G ++Q  YGEDG+    VE Q  DT+ +++ +F+
Sbjct: 786 GYIQRRLVKALEDVMVKYDGTVRNSLGDIVQFCYGEDGMDACFVEPQTFDTLPMNNAEFD 845

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           +KY  +  ++ + +         +  G  D     + ++V     K  + I  E ++   
Sbjct: 846 NKYLIELKDDEKNK--------EKEAGQQD-----DTDLVQPKKPKTQQEIIREKIV--- 889

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQ-----RWKLW 765
                      +E+ +L  DRE L R+IF++G++   LP N+  +I   Q     R   W
Sbjct: 890 -----------EEYVQLKRDREMLQRDIFTNGDNKWPLPVNIKRLIKNAQQKFNIRPSRW 938

Query: 766 GNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYG 798
              +L++       + V  SVE+ M+ ++   G
Sbjct: 939 TTTDLQY-------IDVINSVEEVMSRLVVVKG 964



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 44/59 (74%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G DQ+S +A  NAT LF+ L+RS L ++ V E + L+S+A +W++GE+E+RF+++ V
Sbjct: 962  VKGNDQISHEAQTNATTLFKILLRSWLASRRVIEEFHLNSQALKWVLGEVESRFRKSLV 1020



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +  I + P+Q+++PQ+N+PVMGIVQDTL AVRK TKRD FL K
Sbjct: 446  ISEICMVPKQVVSPQSNKPVMGIVQDTLCAVRKFTKRDCFLTK 488


>gi|157841370|gb|ABV83139.1| RNA polymerase 2 [Oscheius dolichuroides]
          Length = 629

 Score =  424 bits (1091), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/415 (56%), Positives = 292/415 (70%), Gaps = 43/415 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G+D++SKQA  NATLL   L+RSTLC K +A  ++L+ EAFEWL+GEIE RF+ A  I
Sbjct: 235  VGGDDRISKQAQYNATLLMNILLRSTLCAKKMATTHKLNQEAFEWLLGEIETRFKAA--I 292

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
            A  G+       +      ++L         P ++  +   + AG++           +E
Sbjct: 293  AQPGE-------MVGALAAQSLGE-------PATQMTLNTFHYAGVSAKNVTLGVPRLKE 338

Query: 1073 GLIDTAVKTAETVNVLVFL-----------------------FQVTANTAIYYDPDPQNT 1109
              I    K  +T ++ VFL                        +VT+NTAIYYDPD +NT
Sbjct: 339  --IINVSKQLKTPSLTVFLQGAAAKDAEKAKDVLCKLEHTTLRKVTSNTAIYYDPDMKNT 396

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
             I ED E+V+++YEMPDFDP R SPWLLR+ELDR+RMTDKKL+ME I++KI++GFGDDLN
Sbjct: 397  CIEEDDEWVSIFYEMPDFDPNRSSPWLLRLELDRRRMTDKKLSMEQIADKIHSGFGDDLN 456

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNA+KLV RIRI N  D K   EE+ +DKMEDDMFLRCIE+NMLSD+TLQGI +I
Sbjct: 457  VIYTDDNADKLVFRIRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSI 514

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYMH P TD KKR+++T  G+FK IADW+LETDGT+L+KVLSE ++DPVRT SNDICE
Sbjct: 515  AKVYMHKPNTDDKKRVVVTPEGDFKHIADWILETDGTALLKVLSEPNIDPVRTTSNDICE 574

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
            IF+VLGIEAVRKS+E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 575  IFEVLGIEAVRKSIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 629



 Score =  229 bits (584), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 108/140 (77%), Positives = 123/140 (87%)

Query: 350 GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLI 409
           GQQNVEGKRIPFGFR R+LPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLI
Sbjct: 1   GQQNVEGKRIPFGFRHRSLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLI 60

Query: 410 DTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDT 469
           DTAVKTAETGYIQRRLIKAMESVMV+YD TVRNS+GQ++QLRYGE GL G  VE+Q + T
Sbjct: 61  DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSIGQMVQLRYGEAGLDGMWVENQVMPT 120

Query: 470 VALSHKKFEDKYRFDPSNER 489
              S+  FE  ++ D ++E+
Sbjct: 121 QKPSNALFERDFKLDLTDEK 140



 Score =  153 bits (386), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/152 (57%), Positives = 105/152 (69%), Gaps = 30/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT+NTAIYYDPD +NT I ED E+V+++YEMPDFDP R SPWLLR+ELDR+RMTDKK
Sbjct: 378  LRKVTSNTAIYYDPDMKNTCIEEDDEWVSIFYEMPDFDPNRSSPWLLRLELDRRRMTDKK 437

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L+ME I++KI++GFGDDLN                             I+ DDNA+KLV 
Sbjct: 438  LSMEQIADKIHSGFGDDLNV----------------------------IYTDDNADKLVF 469

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRI N  D K   EE+ +DKMEDDMFLRCIE
Sbjct: 470  RIRITNQGDDKA--EEEQIDKMEDDMFLRCIE 499



 Score =  151 bits (381), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/95 (72%), Positives = 79/95 (83%)

Query: 1016 GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLI 1075
            GQQNVEGKRIPFGFR R+LPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLI
Sbjct: 1    GQQNVEGKRIPFGFRHRSLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLI 60

Query: 1076 DTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            DTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 61   DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSI 95



 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 101/170 (59%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+GQ++QLRYGE GL G  VE+Q + T   S+  FE
Sbjct: 70  GYIQRRLIKAMESVMVNYDGTVRNSIGQMVQLRYGEAGLDGMWVENQVMPTQKPSNALFE 129

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             ++ D ++E+ +++ + ED++R+L GS D I E+E                        
Sbjct: 130 RDFKLDLTDEKTMKKCYTEDLIRDLQGSPDAIEEVE------------------------ 165

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+I+++GES  VLPCNL  +I+  Q+
Sbjct: 166 -----------NEWAQLEEDRRLLRKIYATGESKCVLPCNLQRLIWNAQK 204



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 49/58 (84%), Gaps = 3/58 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 827
           +C+I  VL   +VRKS+E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 572 ICEIFEVLGIEAVRKSIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 629



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 39/43 (90%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 558
           S+E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 587 SIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 629


>gi|120561229|gb|ABM27000.1| RNA polymerase II largest subunit, partial [Blastocladiella
           emersonii]
          Length = 1005

 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/414 (55%), Positives = 275/414 (66%), Gaps = 51/414 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++  +MN+LM++P WDG +P P ILKPKPLWTGKQ+ SLIIP  VN    HSTHPD E +
Sbjct: 463 DKAMVMNLLMWVPGWDGNVPVPAILKPKPLWTGKQILSLIIP-KVNCITLHSTHPDGETT 521

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
                ISPGDT+V+VE G LL GI+CKK++GTS+G L+H+ ++E G E         QT+
Sbjct: 522 D----ISPGDTRVIVEDGELLAGIVCKKTVGTSAGGLVHVSWMEHGPEAAKALLNGCQTI 577

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN+WLL                                       HN       G SIGI
Sbjct: 578 VNHWLL---------------------------------------HN-------GFSIGI 591

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIAD  T   I   I +A+  V  VI+ A    L+   G TLR+TFE QVNR+LN A 
Sbjct: 592 GDTIADDDTMQRINELIGEARAGVNAVIEAAQKDTLKVETGLTLRETFEAQVNRLLNGAV 651

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           +  GG+A KS   +NN+K MVVAGSKGSNINISQ+ ACVGQQNVEGKRIPFGF+ R+LPH
Sbjct: 652 NAAGGAAAKSFKVHNNVKHMVVAGSKGSNINISQMSACVGQQNVEGKRIPFGFQYRSLPH 711

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F+KDDY PESRGFVENSYL GL P EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E
Sbjct: 712 FVKDDYSPESRGFVENSYLRGLNPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALE 771

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            +MV YD TVRN+ G +IQ  YGEDG+ G  VE Q ++ + +S  KF+ +YR D
Sbjct: 772 DIMVKYDGTVRNAQGNIIQFAYGEDGMDGTRVESQVLEPLRMSDAKFDRRYRID 825



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/143 (55%), Positives = 93/143 (65%), Gaps = 8/143 (5%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIPFGF+ R+LPHF+KDDY PESRGFVENSYL GL P EFFFHAM
Sbjct: 684  SQMSACVGQQNVEGKRIPFGFQYRSLPHFVKDDYSPESRGFVENSYLRGLNPQEFFFHAM 743

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   +  + YD     TV       +   Y     D
Sbjct: 744  GGREGLIDTAVKTAETGYIQRRLVKALEDIMVKYD----GTVRNAQGNIIQFAYGEDGMD 799

Query: 1129 PTRISPWLLRIELDRKRMTDKKL 1151
             TR+   +    L+  RM+D K 
Sbjct: 800  GTRVESQV----LEPLRMSDAKF 818



 Score = 98.6 bits (244), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 109/222 (49%), Gaps = 46/222 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MV YD TVRN+ G +IQ  YGEDG+ G  VE Q ++ + +S  KF+
Sbjct: 760 GYIQRRLVKALEDIMVKYDGTVRNAQGNIIQFAYGEDGMDGTRVESQVLEPLRMSDAKFD 819

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YR D ++      +     LR     G V   +++E                      
Sbjct: 820 RRYRIDVTD------VGGSSGLR----PGTVEFGIQRE---------------------- 847

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR-WKL------ 764
           M S +V   L  E+E+L  DR  L++IF  G++   LPCNL  +I+  Q  +K+      
Sbjct: 848 MQSAEVQELLNAEYEQLLRDRRDLQQIFPRGDARWPLPCNLNRIIWNAQNLFKIDKSKPS 907

Query: 765 -----WGNENLRFLCKIIFVL--SVRKSVEKEMNTVLQFYGL 799
                +  + +R LC  + V+  + + SVE + N  L    L
Sbjct: 908 NLHPDYVVKKVRALCDGLVVIPGTDKISVEAQRNATLLMQAL 949



 Score = 70.9 bits (172), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 43/59 (72%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            + G D++S +A  NATLL Q LVRSTL TK V E YRL S AF+++VGEI+ RF Q+ V
Sbjct: 928  IPGTDKISVEAQRNATLLMQALVRSTLATKRVLEEYRLDSRAFDYVVGEIQTRFAQSLV 986



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 37/54 (68%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            ++ + + P QI++PQ+N+PVMGIVQDTL  + K T+RD F+DK      + + P
Sbjct: 422  IQQLCMVPLQIVSPQSNKPVMGIVQDTLCGITKFTRRDTFMDKAMVMNLLMWVP 475


>gi|397135920|gb|AFO11455.1| RNA polymerase I, partial [Nakazawaea holstii]
          Length = 870

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/420 (50%), Positives = 271/420 (64%), Gaps = 55/420 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +++MNIL ++P WDG++P+P I+KPKPLWTGKQ+ S++IP  +N+ R       DE    
Sbjct: 355 DEVMNILYWIPDWDGRIPEPTIVKPKPLWTGKQMLSMVIPKGINIERK------DEK--- 405

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
           + ++S  DT +++  G +++G++ KK++G + G L+H  F E G + C   +GNIQ VVN
Sbjct: 406 FTYLSKDDTGMLIVDGEIMLGVVNKKTVGATGGGLIHAVFREKGPQACATLFGNIQKVVN 465

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 466 YWLL---------------------------------------HN-------GFSIGIGD 479

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T   I   I  AK+ V E+I KA N  L P PG TLR++FE  V+++LN ARD 
Sbjct: 480 TIADAPTVRSITDTINAAKDKVQEIITKAQNNQLPPEPGMTLRESFEQNVSQVLNQARDD 539

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G +   SL ++NN+K MV AGSKGSNINISQ+ ACVGQQ VEGKRIPFGF  R+LPHF 
Sbjct: 540 VGKATADSLQDWNNVKQMVSAGSKGSNINISQMSACVGQQIVEGKRIPFGFSDRSLPHFT 599

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 600 KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 659

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MVHYD T RNS+G ++Q  YGEDGL    VE Q IDT+  +H+ FE +Y+ D   E  ++
Sbjct: 660 MVHYDGTTRNSLGNVLQFVYGEDGLDATQVEKQAIDTIPGTHEAFEKRYKIDLMQESTSI 719



 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF  R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 570  SQMSACVGQQIVEGKRIPFGFSDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 629

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 630  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 671



 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 90/166 (54%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G ++Q  YGEDGL    VE Q IDT+  +H+ FE
Sbjct: 646 GYIQRRLVKALEDIMVHYDGTTRNSLGNVLQFVYGEDGLDATQVEKQAIDTIPGTHEAFE 705

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +Y+ D   E                      + +  E++++ S              ++
Sbjct: 706 KRYKIDLMQES---------------------TSINPELLEYGS--------------DI 730

Query: 712 MGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEVI 756
           +G+ ++   L+ E+E+L +DR+ LRE+ F +G+    LP N+  VI
Sbjct: 731 LGNVELQQVLDSEYEQLLQDRQYLREVCFPTGDFQWPLPVNIRRVI 776



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 42/57 (73%)

Query: 955  GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            G  +L +++  NAT+LFQCLVRS L  + V E +RL+  AFEW+VGEIE +FQ++ V
Sbjct: 814  GFGELYEESKANATMLFQCLVRSRLACRRVIEEFRLNRVAFEWVVGEIEVQFQKSVV 870



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 24/126 (19%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   P QI++PQ+N+P+MGIVQDTL  VRKMT RDVF++         YD       
Sbjct: 312  LSQICAVPLQIVSPQSNKPIMGIVQDTLCGVRKMTLRDVFIE---------YD------- 355

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNT 1608
                 E +N+ Y +PD+D     P +++    +   T K++    I + IN    D+  T
Sbjct: 356  -----EVMNILYWIPDWDGRIPEPTIVK---PKPLWTGKQMLSMVIPKGINIERKDEKFT 407

Query: 1609 PLSPTD 1614
             LS  D
Sbjct: 408  YLSKDD 413



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 36/46 (78%)

Query: 30 EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
          E+S  LG +  +ARP+WML+TVLPVPP  VRP+V ++ +AR+++ +
Sbjct: 28 EDSYKLGFNDDYARPEWMLITVLPVPPPHVRPSVQVNDTARSEDDL 73


>gi|301090036|ref|XP_002895253.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
            infestans T30-4]
 gi|262101000|gb|EEY59052.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
            infestans T30-4]
          Length = 1858

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 236/482 (48%), Positives = 304/482 (63%), Gaps = 47/482 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G+D+LS +A ENATL FQ L+RSTL +K V   +RL+  AFEWL+GEIE++F  A V 
Sbjct: 1063 VQGDDRLSIEAQENATLFFQILLRSTLASKCVTLEHRLTETAFEWLMGEIESKFTSALVS 1122

Query: 1013 A-----CVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
            A      VG Q+                 V  K +  G  R + + +  KD   P  R F
Sbjct: 1123 AGEMAGVVGAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIMNIAKDVRTPSLRIF 1182

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
                    LTP          +   I + ++          L  VTANT+IYYDPDP NT
Sbjct: 1183 --------LTPD---CAHDADKAKFIQSQLE-------YTTLADVTANTSIYYDPDPMNT 1224

Query: 1110 VIPEDQEFVNVYYEMPDFD-PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDL 1168
            V+ EDQEFV  YYEMPD D P   SPWLLRIEL+ K M DKKLTM  I+ ++ A +G DL
Sbjct: 1225 VVEEDQEFVASYYEMPDEDTPIARSPWLLRIELNPKMMADKKLTMGEIAAQVEAEYGQDL 1284

Query: 1169 NCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEA 1228
            +CIF DDNA++LVLRIRIM+ ++ K+Q   +     EDD FL+ +E NML+ M L+GIE 
Sbjct: 1285 SCIFTDDNADRLVLRIRIMSDEEEKLQRSGETAVGQEDDTFLKRVEHNMLTQMKLRGIEG 1344

Query: 1229 IGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDIC 1288
            + KVY+     +        + G FK + +W+L+TDGT+L+ V+    VD  RT SNDI 
Sbjct: 1345 VKKVYIR----EGPSTHWFDDVG-FKMMNEWMLDTDGTNLLDVMCYPQVDSTRTISNDIV 1399

Query: 1289 EIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQD 1348
            EI QVLGIEAVR+++  E+  V+ F G YVNYRHLA LCDVMT +GHLMAITRHGINR D
Sbjct: 1400 EIIQVLGIEAVRRALLNEIRQVISFDGAYVNYRHLACLCDVMTFRGHLMAITRHGINRDD 1459

Query: 1349 TGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDG 1408
            +G L+RCSFEETV++LMDAA  +E DP+ GVSEN+++GQL  +GTG  DL+LDA+K  + 
Sbjct: 1460 SGPLVRCSFEETVEILMDAAMFSEGDPLTGVSENVMLGQLAPLGTGIMDLVLDAKKLANA 1519

Query: 1409 IE 1410
            IE
Sbjct: 1520 IE 1521



 Score =  402 bits (1032), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/426 (50%), Positives = 270/426 (63%), Gaps = 58/426 (13%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPK--------PLWTGKQVFSLIIPGNVNMTRTHS 122
           +++ +MN+LM++  WDGK+P P IL PK        P+WTGKQ+FS I+P  +N T   S
Sbjct: 579 HKDWVMNLLMWVSNWDGKVPTPAILVPKKGELGKYTPIWTGKQIFSAIVPA-INFTGFSS 637

Query: 123 THPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGR 182
           TH   E    +  +SP D++V+++ G LL GI+ KK +G+S+G L+HI  LE G +   R
Sbjct: 638 THKSSEK---FSDLSPIDSRVIIQQGELLAGIIDKKIIGSSAGGLVHITMLEKGPDETKR 694

Query: 183 FYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEP 242
             G IQ +VNNWL+  G S                                         
Sbjct: 695 LLGAIQQLVNNWLV--GRSF---------------------------------------- 712

Query: 243 TPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQV 302
               ++G+ DTIAD  T   I   I +AK  V +++ +     LE  PG T+ ++FE  V
Sbjct: 713 ----TVGVSDTIADVSTLKTIVDIITQAKVQVHDLVVRGQKGKLETQPGRTMVESFEGLV 768

Query: 303 NRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFG 362
           N +LN ARD+ G  A+ SL E NN+KA V +GSKGS INISQ+IACVGQQNVEGKRIP+G
Sbjct: 769 NIVLNTARDQAGREAQGSLDETNNIKATVTSGSKGSFINISQIIACVGQQNVEGKRIPYG 828

Query: 363 FRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQ 422
           F  RTLPH+ KDD GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQ
Sbjct: 829 FNHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQ 888

Query: 423 RRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYR 482
           RRL+KAMESVM  YD TVRN+ G++IQ  YGEDG+    VE QR ++  L+  +FE KY 
Sbjct: 889 RRLVKAMESVMTRYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESHKLNKVQFEKKYV 948

Query: 483 FDPSNE 488
           FDPS+E
Sbjct: 949 FDPSDE 954



 Score =  170 bits (431), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 127/194 (65%), Gaps = 9/194 (4%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+++  E+  V+ F G YVNYRHLA LCDVMT +GHLMAITRHGINR D+
Sbjct: 1401 IIQVLGIEAVRRALLNEIRQVISFDGAYVNYRHLACLCDVMTFRGHLMAITRHGINRDDS 1460

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G L+RCSFEETV++LMDAA  +E DP+ GVSEN+++GQL  +GTG  DL+LDA+K  + I
Sbjct: 1461 GPLVRCSFEETVEILMDAAMFSEGDPLTGVSENVMLGQLAPLGTGIMDLVLDAKKLANAI 1520

Query: 893  EIPLA--TGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFS 950
            E   +    +M G    +      P   +P  TP+A STP ++A     +  +PGG  FS
Sbjct: 1521 EYEASEIQQVMQGLDNEWRSPDQGPG--TPMATPFA-STPGFSA----SSPFSPGGGSFS 1573

Query: 951  PSVAGEDQLSKQAN 964
            P+      ++  A+
Sbjct: 1574 PAAGAFSPMASPAS 1587



 Score =  149 bits (376), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/166 (50%), Positives = 98/166 (59%), Gaps = 14/166 (8%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+IACVGQQNVEGKRIP+GF  RTLPH+ KDD GPESRGFVENSYL GLTP EFFFHAM
Sbjct: 809  SQIIACVGQQNVEGKRIPYGFNHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAM 868

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   +    YD     TV     E +   Y     D
Sbjct: 869  GGREGLIDTAVKTAETGYIQRRLVKAMESVMTRYD----GTVRNAQGEIIQFLYGEDGMD 924

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGD-DLNCIFN 1173
                      + ++++R    KL      +K      D DL C+ N
Sbjct: 925  ---------AVWVEKQRFESHKLNKVQFEKKYVFDPSDEDLGCVPN 961



 Score =  140 bits (352), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 77/166 (46%), Positives = 98/166 (59%), Gaps = 29/166 (17%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD-PTRISPWLLRIELDRKRMTDK 1587
            L  VTANT+IYYDPDP NTV+ EDQEFV  YYEMPD D P   SPWLLRIEL+ K M DK
Sbjct: 1206 LADVTANTSIYYDPDPMNTVVEEDQEFVASYYEMPDEDTPIARSPWLLRIELNPKMMADK 1265

Query: 1588 KLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLV 1647
            KLT                            M  I+ ++ A +G DL+CIF DDNA++LV
Sbjct: 1266 KLT----------------------------MGEIAAQVEAEYGQDLSCIFTDDNADRLV 1297

Query: 1648 LRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEETDRSFVKVDFVE 1693
            LRIRIM+ ++ K+Q   +     EDD FL+ +E    + +K+  +E
Sbjct: 1298 LRIRIMSDEEEKLQRSGETAVGQEDDTFLKRVEHNMLTQMKLRGIE 1343



 Score =  117 bits (292), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 71/102 (69%), Gaps = 4/102 (3%)

Query: 495  VSSLRRVVNSKPLLIGCWKLTSVEK----EMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 550
            V S R + N    +I    + +V +    E+  V+ F G YVNYRHLA LCDVMT +GHL
Sbjct: 1388 VDSTRTISNDIVEIIQVLGIEAVRRALLNEIRQVISFDGAYVNYRHLACLCDVMTFRGHL 1447

Query: 551  MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 592
            MAITRHGINR D+G L+RCSFEETV++LMDAA  +E DP+ G
Sbjct: 1448 MAITRHGINRDDSGPLVRCSFEETVEILMDAAMFSEGDPLTG 1489



 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 109/215 (50%), Gaps = 28/215 (13%)

Query: 592  GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
            GYIQRRL+KAMESVM  YD TVRN+ G++IQ  YGEDG+    VE QR ++  L+  +FE
Sbjct: 885  GYIQRRLVKAMESVMTRYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESHKLNKVQFE 944

Query: 652  DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELE-KEMVDHFSWKQLRRIFNEDV-LR 709
             KY FDPS+E  L  + N     +L    D+I ++   +       ++L ++  + V LR
Sbjct: 945  KKYVFDPSDE-DLGCVPN--CPDQLYLEPDIIKDIRTNQRTQQLLREELTQLQKDRVNLR 1001

Query: 710  ELMGS------GDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQRWK 763
             ++ S       D  +++     +L E+ + L  I      ++  P +L     I     
Sbjct: 1002 VILASRGQGQESDNAAQIPVNIRRLVENAQQLFSI------DMRKPSSLHPSRII----- 1050

Query: 764  LWGNENLRFLCKIIFVLSV--RKSVEKEMNTVLQF 796
                E ++ LCK I V+    R S+E + N  L F
Sbjct: 1051 ----EGVKELCKKIIVVQGDDRLSIEAQENATLFF 1081



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 38/50 (76%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           E+   LG+DP++ARPDW+++T++PVPP  VRP+V + G AR ++ + + L
Sbjct: 254 EDCFALGLDPRWARPDWLVMTLMPVPPPHVRPSVAIDGMARGEDDLTHNL 303



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/33 (72%), Positives = 28/33 (84%)

Query: 1499 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            IITPQ+NRPVMGIVQD+L   +K TKRD+FL K
Sbjct: 548  IITPQSNRPVMGIVQDSLLGAQKFTKRDIFLHK 580


>gi|85682951|gb|ABC73451.1| CG1554 [Drosophila miranda]
          Length = 335

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/347 (64%), Positives = 253/347 (72%), Gaps = 51/347 (14%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ  
Sbjct: 12   VTGADRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQAN 71

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P++    
Sbjct: 72   PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPR--LKEIINISKKPKA---- 125

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDP 1104
                     PS   F   G        A + AE   NVL       L +VTANTAIYYDP
Sbjct: 126  ---------PSLTVFLTGG--------AARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 168

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GF
Sbjct: 169  DPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGF 228

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            G+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ
Sbjct: 229  GEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQ 288

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKV 1271
            GIEAIGKVYMHLPQTDSKKRI+ITE+GEFKAI +WLLETDGTS+MKV
Sbjct: 289  GIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKV 335



 Score =  221 bits (564), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 155  LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 214

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+EKIN GF                            G+DLNCIFNDDNA+KLVL
Sbjct: 215  LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 246

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 247  RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 278


>gi|157841422|gb|ABV83170.1| RNA polymerase 2 [Caenorhabditis sp. JU727]
          Length = 620

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/408 (55%), Positives = 278/408 (68%), Gaps = 42/408 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+G D++SKQA  NATLL   L+RSTLCTK +  + +L++EAF+WL+GEIE RFQ A   
Sbjct: 232  VSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQSAIAQ 291

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  +  Q+                 V  K +  G  R + + +  K    P    F
Sbjct: 292  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVF 351

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            +  +             A    E   D   K   T      L +VT NTAIYYDPDP+NT
Sbjct: 352  LTGA-------------AAKDPEKAKDVLCKLEHTT-----LKKVTCNTAIYYDPDPKNT 393

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            VI ED+E+V+++YEMPD D TR SPWLLRIELDRK M DKKLTME I+++I+ GFG D++
Sbjct: 394  VIAEDEEWVSIFYEMPDHDLTRTSPWLLRIELDRKSMVDKKLTMEMIADRIHGGFGTDVH 453

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV R+RI + DD     +E+ VDKMEDD+FLRCIEANMLSD+TLQGI  I
Sbjct: 454  TIYTDDNAEKLVFRLRI-SGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPQI 512

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYM  P TD KKRIIIT  G FKA+ADW+LETDGT+L++VLSER +DP+RT SNDICE
Sbjct: 513  SKVYMSQPNTDDKKRIIITPEGGFKAVADWILETDGTALLRVLSERQIDPIRTTSNDICE 572

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1337
            IF+VLGIEAVRKS+EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLM
Sbjct: 573  IFEVLGIEAVRKSIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLM 620



 Score =  227 bits (579), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 108/144 (75%), Positives = 123/144 (85%)

Query: 353 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 412
           NVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 1   NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 60

Query: 413 VKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVAL 472
           VKTAETGYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  
Sbjct: 61  VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKP 120

Query: 473 SHKKFEDKYRFDPSNERPTLRNVS 496
           ++  FE  +R D ++ +   +N S
Sbjct: 121 NNAVFERDFRMDLTDNKFLRKNYS 144



 Score =  164 bits (415), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 85/152 (55%), Positives = 103/152 (67%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D TR SPWLLRIELDRK M DKK
Sbjct: 375  LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLTRTSPWLLRIELDRKSMVDKK 434

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+ GFG D++T                            I+ DDNAEKLV 
Sbjct: 435  LTMEMIADRIHGGFGTDVHT----------------------------IYTDDNAEKLVF 466

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI + DD     +E+ VDKMEDD+FLRCIE
Sbjct: 467  RLRI-SGDDKGDGGQEEQVDKMEDDVFLRCIE 497



 Score =  146 bits (369), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 76/92 (82%)

Query: 1019 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 1078
            NVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 1    NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 60

Query: 1079 VKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            VKTAET  +   L +   +  + YD   +N++
Sbjct: 61   VKTAETGYIQRRLIKAMESVMVNYDGTVRNSL 92



 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 100/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 67  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 126

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++ + LR+ ++EDV+RE+  S D IS +E                        
Sbjct: 127 RDFRMDLTDNKFLRKNYSEDVVREIQESTDGISLVE------------------------ 162

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 163 -----------SEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQK 201



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 42/51 (82%), Gaps = 3/51 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 820
           +C+I  VL   +VRKS+EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLM
Sbjct: 570 ICEIFEVLGIEAVRKSIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLM 620



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 32/36 (88%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 551
           S+EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLM
Sbjct: 585 SIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLM 620


>gi|21280517|gb|AAM45151.1|AF395110_1 RNA polymerase II largest subunit [Naegleria gruberi]
          Length = 1590

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/460 (49%), Positives = 287/460 (62%), Gaps = 57/460 (12%)

Query: 39  PKFARPDWMLV--TVLPVPPLSVRPAVVMHGSARNQEQMMNILMFLPIWDGKMPQPCILK 96
           P+  RP   LV  T+L    L+ R   +       ++ MMN LM L  +DGK+P P ILK
Sbjct: 447 PQSNRPVIALVQDTLLAASKLTRRDVFIA------KDLMMNCLMHLIDFDGKLPVPAILK 500

Query: 97  PKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY--QWISPGDTKVVVEHGSLLMGI 154
           PKPLWTGKQ+F+ ++P  VN+  T STH D  D   +    I   DTKV+++ G L+ G+
Sbjct: 501 PKPLWTGKQLFTFLLP-KVNLENTSSTHEDLTDKKDHLDHDIPEFDTKVLIDRGELVSGV 559

Query: 155 LCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTY 214
           L KKSLG+S GSL+HI   E G     +F G  Q V+N+WL+                  
Sbjct: 560 LDKKSLGSSHGSLIHIIVNEKGVNEGKKFLGQCQRVINHWLI------------------ 601

Query: 215 LEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDV 274
                                         G SIGIGDTIAD  T  +I+  I+KA++DV
Sbjct: 602 ----------------------------NRGFSIGIGDTIADKATMEQIEETIRKAEKDV 633

Query: 275 IEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAG 334
             +++ A    L    G T++Q+FENQVN++LN AR+  G  AKKSL + NN+K+MV AG
Sbjct: 634 KLIVKDAQEGKLRAEAGRTIQQSFENQVNKVLNKAREDAGNKAKKSLKDDNNIKSMVTAG 693

Query: 335 SKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 394
           SKGS INISQ+IACVGQQNVEGKRIP+GFR RTLPHF +DD+GPESRGFV NSYL GLTP
Sbjct: 694 SKGSYINISQIIACVGQQNVEGKRIPYGFRNRTLPHFAQDDHGPESRGFVANSYLRGLTP 753

Query: 395 SEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGE 454
            EFFFH MGGREGLIDTAVKT+ETGYIQRRLIKAME +MV YD TVR++ G ++Q  YGE
Sbjct: 754 QEFFFHTMGGREGLIDTAVKTSETGYIQRRLIKAMEDIMVKYDGTVRDAQGNVVQFLYGE 813

Query: 455 DGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLRN 494
           DG+    VE Q ID + LS  KF+DKY ++     P+  N
Sbjct: 814 DGMDAHKVESQSIDIMNLSDAKFQDKYWYNSLGSSPSFTN 853



 Score =  304 bits (779), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 200/546 (36%), Positives = 292/546 (53%), Gaps = 90/546 (16%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVA-ENYRLSSEAFEWLVGEIENRF----- 1006
            + G D+LS +A  NATLLF   +RST   K  + +N  L  +   + + ++E RF     
Sbjct: 965  IKGTDELSTEAQTNATLLFSMFLRSTFFFKGCSLKNCVLLKKPLTFWLVKLELRFHNCLA 1024

Query: 1007 QQAQVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRG 1048
            Q  +++  V  Q+                 V  K +  G  R + L +  K+   P    
Sbjct: 1025 QPGEMVGSVAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKELLNVAKNIKTPGLTI 1084

Query: 1049 FVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQN 1108
            ++ N Y+        F  A   +E L  T             L  VTA  +I YDP+P N
Sbjct: 1085 YLNNEYIGD------FEKAKMVKEDLEYTT------------LGHVTAAASIVYDPEPAN 1126

Query: 1109 TVIPEDQEFVNVYY----EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            +VI ED+EF+        +    D T ++PW LR ELD+  M+D  LTM  +++KI   F
Sbjct: 1127 SVIEEDREFIEELLEELKDTAVLDSTTLNPWSLRFELDKMMMSDT-LTMAQVAKKIQEEF 1185

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVD-------KMEDD-------MFL 1210
             +D+ C ++DDNA+KL+L +RI   D  K +D + A D       K+E++        FL
Sbjct: 1186 QNDITCFYSDDNADKLILVVRIHKDDKEKEKDAQVAKDPSDEVLRKLEEEDIENSTVEFL 1245

Query: 1211 RCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMK 1270
            R +E+NML+++ L+G + + KV++   + + KK  + + SG    +  W+L+T+G +L+ 
Sbjct: 1246 RRLESNMLNELALKGYKDLKKVFLR--EENDKK--VFSSSG-VATVKQWVLDTEGCNLLA 1300

Query: 1271 VLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVM 1330
            VLS   VD   T SND+ EI  VLGIEA R ++ +EM  V++F G YVNYRHLA+LCDVM
Sbjct: 1301 VLSHPYVDHTITTSNDVNEILDVLGIEACRNALMREMRKVIEFDGSYVNYRHLAILCDVM 1360

Query: 1331 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 1390
            T +G LMAITR GINR DTG LMRCSFEETV++L++AA  A+ D ++GVS N+++GQL  
Sbjct: 1361 THRGGLMAITRRGINRSDTGPLMRCSFEETVEILIEAATFADTDTLKGVSANVMVGQLAP 1420

Query: 1391 MGTGCFDLLLDAEKCKDGIEIP------------------------LATGMMGGPAGMFF 1426
            +GTGCF L LD E  K  + +                         LAT   GG A  + 
Sbjct: 1421 IGTGCFGLYLDEELLKQAVAVKPSFVTETKSMYGSLGATTPYHTSGLATPYHGGVATPYH 1480

Query: 1427 GSAATP 1432
            G A++P
Sbjct: 1481 GGASSP 1486



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/322 (35%), Positives = 171/322 (53%), Gaps = 53/322 (16%)

Query: 679  SGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREI 738
            S +V+ +LE+E +++ + + LRR+   ++L EL   G       K+ +K+    E  +++
Sbjct: 1225 SDEVLRKLEEEDIENSTVEFLRRL-ESNMLNELALKG------YKDLKKVFLREENDKKV 1277

Query: 739  FSSGESNVVLP-------CNLMEVI-FILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEM 790
            FSS     V         CNL+ V+        +  + ++  +  ++ + + R ++ +EM
Sbjct: 1278 FSSSGVATVKQWVLDTEGCNLLAVLSHPYVDHTITTSNDVNEILDVLGIEACRNALMREM 1337

Query: 791  NTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDA 850
              V++F G YVNYRHLA+LCDVMT +G LMAITR GINR DTG LMRCSFEETV++L++A
Sbjct: 1338 RKVIEFDGSYVNYRHLAILCDVMTHRGGLMAITRRGINRSDTGPLMRCSFEETVEILIEA 1397

Query: 851  AAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--------------- 895
            A  A+ D ++GVS N+++GQL  +GTGCF L LD E  K  + +                
Sbjct: 1398 ATFADTDTLKGVSANVMVGQLAPIGTGCFGLYLDEELLKQAVAVKPSFVTETKSMYGSLG 1457

Query: 896  ---------LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNALMSPG------ 939
                     LAT   GG A  + G A++P +    MTP  ++ +P Y    SP       
Sbjct: 1458 ATTPYHTSGLATPYHGGVATPYHGGASSPWTQG-AMTPLGRTPSPEYQGGFSPSPYNSAF 1516

Query: 940  --AAMTPGGP----GFSPSVAG 955
               A +P  P    G+SPS  G
Sbjct: 1517 SPVASSPTSPGHQGGYSPSSPG 1538



 Score =  150 bits (378), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/95 (70%), Positives = 77/95 (81%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+IACVGQQNVEGKRIP+GFR RTLPHF +DD+GPESRGFV NSYL GLTP EFFFH M
Sbjct: 702  SQIIACVGQQNVEGKRIPYGFRNRTLPHFAQDDHGPESRGFVANSYLRGLTPQEFFFHTM 761

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
            GGREGLIDTAVKT+ET  +   L +   +  + YD
Sbjct: 762  GGREGLIDTAVKTSETGYIQRRLIKAMEDIMVKYD 796



 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 61/74 (82%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            +EM  V++F G YVNYRHLA+LCDVMT +G LMAITR GINR DTG LMRCSFEETV++L
Sbjct: 1335 REMRKVIEFDGSYVNYRHLAILCDVMTHRGGLMAITRRGINRSDTGPLMRCSFEETVEIL 1394

Query: 579  MDAAAHAEADPMRG 592
            ++AA  A+ D ++G
Sbjct: 1395 IEAATFADTDTLKG 1408



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 93/173 (53%), Gaps = 21/173 (12%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAME +MV YD TVR++ G ++Q  YGEDG+    VE Q ID + LS  KF+
Sbjct: 778 GYIQRRLIKAMEDIMVKYDGTVRDAQGNVVQFLYGEDGMDAHKVESQSIDIMNLSDAKFQ 837

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIF-NEDVLRE 710
           DKY ++                   +GS    +   +  V   S   L+  F +  V  E
Sbjct: 838 DKYWYNS------------------LGSSPSFTNPTESSVSMPSGGILKESFISTKVYDE 879

Query: 711 LMGS-GDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVIFILQR 761
           ++      +S++ +E++ L EDR  LR EIF + E+ +V+P NL  +I   Q+
Sbjct: 880 ILKDPATYLSKVREEYKTLMEDRHILRTEIFPNAENKIVMPVNLKRIIKNAQK 932



 Score = 87.8 bits (216), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 87/179 (48%), Gaps = 38/179 (21%)

Query: 1521 KMTKRDV---FLDKVTANTAIYYDPDPQNTVIPEDQEFVNVYY----EMPDFDPTRISPW 1573
            KM K D+    L  VTA  +I YDP+P N+VI ED+EF+        +    D T ++PW
Sbjct: 1098 KMVKEDLEYTTLGHVTAAASIVYDPEPANSVIEEDREFIEELLEELKDTAVLDSTTLNPW 1157

Query: 1574 LLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDD 1633
             LR ELD+  M+D  LTM                              +++KI   F +D
Sbjct: 1158 SLRFELDKMMMSD-TLTM----------------------------AQVAKKIQEEFQND 1188

Query: 1634 LNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEETDRSFVKVDFV 1692
            + C ++DDNA+KL+L +RI   D  K +D + A D    D  LR +EE D     V+F+
Sbjct: 1189 ITCFYSDDNADKLILVVRIHKDDKEKEKDAQVAKDP--SDEVLRKLEEEDIENSTVEFL 1245



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 7/50 (14%)

Query: 1482 LLTLTLMVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            LL LT++       PR IITPQ+NRPV+ +VQDTL A  K+T+RDVF+ K
Sbjct: 434  LLELTMV-------PRNIITPQSNRPVIALVQDTLLAASKLTRRDVFIAK 476



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 28  PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQE 73
           P E+  +LG D   ARP+WM++T LP+PP  VRP+ V HGSA   E
Sbjct: 146 PAEDLELLGFDKDNARPEWMILTCLPIPPPQVRPS-VHHGSADRSE 190


>gi|397135940|gb|AFO11465.1| RNA polymerase I, partial [Spencermartinsiella europaea]
          Length = 868

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/421 (52%), Positives = 271/421 (64%), Gaps = 55/421 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           EQ+MNIL+++P WDG +PQP ILKP+P+WTGKQ+ S+ IP  + + R        +D  P
Sbjct: 357 EQVMNILLWIPGWDGVVPQPAILKPRPMWTGKQMVSMTIPSGIFLQRF-------DDGNP 409

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
               SP D  ++++ G ++ G++ KK++G + G L+H    E G +VC  F+GNIQ VVN
Sbjct: 410 IS--SPKDNGMLIQKGEIIYGVVDKKTVGATGGGLIHTIMREKGPKVCAGFFGNIQKVVN 467

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 468 YWLL---------------------------------------HN-------GFSIGIGD 481

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T  +I   I +AK+ V E+I +A +  L P PG TLR++FE+ V+R+LN ARD 
Sbjct: 482 TIADGATMRDIANTISEAKQKVQEIILEAQSNKLSPEPGMTLRESFEHNVSRVLNQARDN 541

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ SL E NN+K MVVAGSKGS INIS + ACVGQQ VEGKRIPFGF  R+LPHF 
Sbjct: 542 AGRSAEMSLKELNNVKQMVVAGSKGSFINISLMSACVGQQIVEGKRIPFGFGDRSLPHFT 601

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 602 KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 661

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MV YD T RNS+G +IQ  YGEDGL G  VE Q +DT+  SH  F+ KYR D  +   +L
Sbjct: 662 MVQYDGTTRNSLGDVIQFVYGEDGLDGTQVEKQTVDTIPGSHDAFDRKYRIDRMDSSKSL 721

Query: 493 R 493
           R
Sbjct: 722 R 722



 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 101/174 (58%), Gaps = 15/174 (8%)

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
            ACVGQQ VEGKRIPFGF  R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GRE
Sbjct: 576  ACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGRE 635

Query: 1073 GLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRI 1132
            GLIDTAVKTAET  +   L +   +  + YD   +N++     + +   Y     D T++
Sbjct: 636  GLIDTAVKTAETGYIQRRLVKALEDIMVQYDGTTRNSL----GDVIQFVYGEDGLDGTQV 691

Query: 1133 SPWLLRI------ELDRK----RMTDKKLTMEAISEKINAGFGD-DLNCIFNDD 1175
                +          DRK    RM   K    ++ E  N   GD DL  I +++
Sbjct: 692  EKQTVDTIPGSHDAFDRKYRIDRMDSSKSLRPSLLESGNDILGDVDLQRILDEE 745



 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 89/167 (53%), Gaps = 38/167 (22%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MV YD T RNS+G +IQ  YGEDGL G  VE Q +DT+  SH  F+
Sbjct: 648 GYIQRRLVKALEDIMVQYDGTTRNSLGDVIQFVYGEDGLDGTQVEKQTVDTIPGSHDAFD 707

Query: 652 DKYRFDPSNERQLRRIFNEDVLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRE 710
            KYR D        R+ +   LR  L+ SG+                            +
Sbjct: 708 RKYRID--------RMDSSKSLRPSLLESGN----------------------------D 731

Query: 711 LMGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVI 756
           ++G  D+   L++E+++L  DR+ LRE +F  G+ N  LP N+  ++
Sbjct: 732 ILGDVDLQRILDEEYDQLQNDRKTLREFVFPEGDHNWPLPVNVRRIV 778



 Score = 63.2 bits (152), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 24/132 (18%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   P QI++PQ+N+PVMGIVQDTL  VRKMTKRD F+D                  
Sbjct: 314  LSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTKRDTFIDY----------------- 356

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNT 1608
                ++ +N+   +P +D     P +L+    R   T K++    I   I     DD N 
Sbjct: 357  ----EQVMNILLWIPGWDGVVPQPAILK---PRPMWTGKQMVSMTIPSGIFLQRFDDGNP 409

Query: 1609 PLSPTDKKLTME 1620
              SP D  + ++
Sbjct: 410  ISSPKDNGMLIQ 421



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 40/54 (74%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRF 1006
            V G+ ++ ++A ENA+ LF+CL+RS L ++ V E YRL+  AFEW++GEIE + 
Sbjct: 814  VRGKGEILEEAQENASYLFRCLIRSRLASRRVIEEYRLNRLAFEWVLGEIETQL 867


>gi|145351142|ref|XP_001419944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580177|gb|ABO98237.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1646

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/414 (53%), Positives = 270/414 (65%), Gaps = 51/414 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++  MNI+M+L  WDGK+P+P ILKP+PLWTGKQVFS+++P  VN+ RT +   D +D  
Sbjct: 533 KDVFMNIIMWLEDWDGKVPKPAILKPQPLWTGKQVFSMMLP-KVNLLRTSAWAKDSDDMA 591

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
                S  DT V +E G LL G LCKK++G+  G L+H+ + E G           QT+V
Sbjct: 592 ----FSVDDTGVRIEQGELLTGTLCKKTMGSGGGGLIHVTWEEWGPIAARGLISQTQTLV 647

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N W+L                                       H+       G ++GI 
Sbjct: 648 NYWVL---------------------------------------HH-------GFTVGIA 661

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD +T   I   I KAK DV EVI+ A N +LE  PG T++Q+FE +VN+ILN ARD
Sbjct: 662 DTIADDETMFSINNTITKAKADVKEVIKLAQNNELELQPGMTMQQSFEQKVNQILNKARD 721

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G SA+ SL + NN+K MV AGSKGS +NISQ+IACVGQQNVEGKRIP+GF+ RTLPHF
Sbjct: 722 NAGNSAQNSLMDTNNVKMMVTAGSKGSFLNISQMIACVGQQNVEGKRIPYGFKGRTLPHF 781

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDD+GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME 
Sbjct: 782 SKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 841

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDP 485
           V+V YD TVRNSVG +IQ  YGEDG+    +E Q IDT+  S K+F  K+  DP
Sbjct: 842 VVVKYDGTVRNSVGDVIQFLYGEDGMDATMIESQSIDTLRFSVKEFAAKFHIDP 895



 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 220/498 (44%), Positives = 303/498 (60%), Gaps = 24/498 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D LS +A  N T+LF   VR+ L  K V + ++L+   F+W++GEIE+RF+ A   
Sbjct: 996  VPGTDPLSVEAQRNGTMLFFAHVRANLAAKRVLKEHKLTRAGFDWVIGEIESRFKMALAP 1055

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLP--HFIKDDYGPESRGF-----VENSYLAGLTPSEFFF 1065
               G   V  + I     + TL   HF        + G      + N   +  TPS    
Sbjct: 1056 PGDGIGTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKSIKTPS--LT 1113

Query: 1066 HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMP 1125
             A+        T  K  +       L  V A T ++YDPDP +TVI ED+EFV  YYEMP
Sbjct: 1114 IALKPELAGDRTRAKDCQASLEYTTLHSVAAVTEVHYDPDPTDTVIEEDREFVRAYYEMP 1173

Query: 1126 D--FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLR 1183
            D   DP+R+SPWLLRIEL+R+ M DKKL M  ++E+IN  F  DL+CIFNDDN+EKLVLR
Sbjct: 1174 DEDVDPSRMSPWLLRIELNREMMVDKKLLMADVAERINEDFAGDLSCIFNDDNSEKLVLR 1233

Query: 1184 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1243
            IRIMN +  K +D        ED++FL+ +E  MLS++ L+GI  I KV++     ++K+
Sbjct: 1234 IRIMNPEGVKYEDA-----STEDEVFLKRLETQMLSNLALRGIPDIKKVFIR----EAKQ 1284

Query: 1244 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1303
              I +++  F+   +W+L+T+G +L++V++  DVD  RT SN + E+ QVLGIEAVR ++
Sbjct: 1285 NAINSKTELFEKTTEWMLDTEGVNLLEVMAHPDVDFTRTTSNHLIEVIQVLGIEAVRNTL 1344

Query: 1304 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1363
             +E+  V++F G YVNYRHLA+L +VMT +GHLM+ITRHGINR +TG LMRCSFEETVD+
Sbjct: 1345 LRELRGVIEFDGSYVNYRHLAILVEVMTYRGHLMSITRHGINRVETGPLMRCSFEETVDI 1404

Query: 1364 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1423
            LM+A+A +E D M G SENI++GQ   +GTG F L L+ E  +D +E+ L       P  
Sbjct: 1405 LMEASAFSERDNMTGPSENIMLGQFCPIGTGEFKLHLNDELLQDAVELELFGDGSRTPG- 1463

Query: 1424 MFFGSAATPSSIPGPPAW 1441
               G   TP    G P W
Sbjct: 1464 --HGGMMTPGR-DGTPGW 1478



 Score =  154 bits (389), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 83/102 (81%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+IACVGQQNVEGKRIP+GF+ RTLPHF KDD+GPESRGFVENSYL GLTP EFFFHAM
Sbjct: 753  SQMIACVGQQNVEGKRIPYGFKGRTLPHFSKDDFGPESRGFVENSYLRGLTPQEFFFHAM 812

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N+V
Sbjct: 813  GGREGLIDTAVKTSETGYIQRRLVKAMEDVVVKYDGTVRNSV 854



 Score =  153 bits (386), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/174 (45%), Positives = 112/174 (64%), Gaps = 13/174 (7%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR ++ +E+  V++F G YVNYRHLA+L +VMT +GHLM+ITRHGINR +T
Sbjct: 1331 VIQVLGIEAVRNTLLRELRGVIEFDGSYVNYRHLAILVEVMTYRGHLMSITRHGINRVET 1390

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G LMRCSFEETVD+LM+A+A +E D M G SENI++GQ   +GTG F L L+ E  +D +
Sbjct: 1391 GPLMRCSFEETVDILMEASAFSERDNMTGPSENIMLGQFCPIGTGEFKLHLNDELLQDAV 1450

Query: 893  EIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGG 946
            E+ L            FG  +        MTP    TP + +  SP   ++PGG
Sbjct: 1451 ELEL------------FGDGSRTPGHGGMMTPGRDGTPGWGS-KSPSFLLSPGG 1491



 Score =  134 bits (336), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/154 (47%), Positives = 92/154 (59%), Gaps = 35/154 (22%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTD 1586
            L  V A T ++YDPDP +TVI ED+EFV  YYEMPD   DP+R+SPWLLRIEL+R+ M D
Sbjct: 1139 LHSVAAVTEVHYDPDPTDTVIEEDREFVRAYYEMPDEDVDPSRMSPWLLRIELNREMMVD 1198

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL M  ++                            E+IN  F  DL+CIFNDDN+EKL
Sbjct: 1199 KKLLMADVA----------------------------ERINEDFAGDLSCIFNDDNSEKL 1230

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            VLRIRIMN +  K +D        ED++FL+ +E
Sbjct: 1231 VLRIRIMNPEGVKYEDA-----STEDEVFLKRLE 1259



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 62/74 (83%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            +E+  V++F G YVNYRHLA+L +VMT +GHLM+ITRHGINR +TG LMRCSFEETVD+L
Sbjct: 1346 RELRGVIEFDGSYVNYRHLAILVEVMTYRGHLMSITRHGINRVETGPLMRCSFEETVDIL 1405

Query: 579  MDAAAHAEADPMRG 592
            M+A+A +E D M G
Sbjct: 1406 MEASAFSERDNMTG 1419



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 103/223 (46%), Gaps = 51/223 (22%)

Query: 592  GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
            GYIQRRL+KAME V+V YD TVRNSVG +IQ  YGEDG+    +E Q IDT+  S K+F 
Sbjct: 829  GYIQRRLVKAMEDVVVKYDGTVRNSVGDVIQFLYGEDGMDATMIESQSIDTLRFSVKEFA 888

Query: 652  DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             K+  DP         FN   L E   S                              EL
Sbjct: 889  AKFHIDPDVPG-----FNNGWLSEEQAS------------------------------EL 913

Query: 712  MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR-WKLW----G 766
              +  V   L+ EW++L  DR  LR I  +G+ +V LP N+  +++  Q+ + L+    G
Sbjct: 914  AHTAKVREILDAEWDRLQRDRVELRTICPTGDPHVHLPVNMKRILWNAQKQYGLYRPDSG 973

Query: 767  NENLR----------FLCKIIFVLSVRK-SVEKEMNTVLQFYG 798
             E ++           L K+I V      SVE + N  + F+ 
Sbjct: 974  EEEVKVTHIIESVAELLPKLIVVPGTDPLSVEAQRNGTMLFFA 1016



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 31/43 (72%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            V+ + + P+ I++PQ N+PVM IVQDTL   R +TKRD F+ K
Sbjct: 491  VKELMMVPKMIVSPQANKPVMAIVQDTLLGCRLITKRDTFITK 533


>gi|348676924|gb|EGZ16741.1| RNA polymerase II large subunit [Phytophthora sojae]
          Length = 1852

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/482 (48%), Positives = 304/482 (63%), Gaps = 47/482 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G+D+LS +A ENATL FQ L+RSTL +K V   +RL+  AFEWL+GEIE++F  A V 
Sbjct: 1063 VQGDDRLSIEAQENATLFFQILLRSTLASKCVTLEHRLTETAFEWLMGEIESKFTSALVS 1122

Query: 1013 A-----CVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
            A      VG Q+                 V  K +  G  R + + +  KD   P  R F
Sbjct: 1123 AGEMAGVVGAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIMNIAKDVRTPSLRIF 1182

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
                    LTP          +   I + ++          L  VTANT+IYYDPDP NT
Sbjct: 1183 --------LTPD---CAHDADKAKFIQSQLE-------YTTLADVTANTSIYYDPDPMNT 1224

Query: 1110 VIPEDQEFVNVYYEMPDFD-PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDL 1168
            V+ EDQEFV  YYEMPD D P   SPWLLRIEL+ K M DKKLTM  I+ ++ + +G DL
Sbjct: 1225 VVEEDQEFVASYYEMPDEDTPIARSPWLLRIELNPKMMADKKLTMGEIAAQVESEYGQDL 1284

Query: 1169 NCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEA 1228
            +CIF DDNA++LVLRIRIM+ ++ K+Q   +     EDD FL+ +E NML+ M L+GIE 
Sbjct: 1285 SCIFTDDNADRLVLRIRIMSDEEEKLQRSGETAVGQEDDTFLKRVEHNMLTQMKLRGIEG 1344

Query: 1229 IGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDIC 1288
            + KVY+     +        + G FK + +W+L+TDGT+L+ V+    VD  RT SNDI 
Sbjct: 1345 VKKVYIR----EGPSTHWFDDVG-FKMMNEWMLDTDGTNLLDVMCYPQVDATRTISNDIV 1399

Query: 1289 EIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQD 1348
            EI QVLGIEAVR+++  E+  V+ F G YVNYRHLA LCDVMT +GHLMAITRHGINR D
Sbjct: 1400 EIIQVLGIEAVRRALLNEIRQVISFDGAYVNYRHLACLCDVMTFRGHLMAITRHGINRDD 1459

Query: 1349 TGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDG 1408
            +G L+RCSFEETV++LMDAA  +E DP+ GVSEN+++GQL  +GTG  DL+LDA+K  + 
Sbjct: 1460 SGPLVRCSFEETVEILMDAAMFSEGDPLTGVSENVMLGQLAPLGTGIMDLVLDAKKLANA 1519

Query: 1409 IE 1410
            IE
Sbjct: 1520 IE 1521



 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/425 (50%), Positives = 270/425 (63%), Gaps = 58/425 (13%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPK--------PLWTGKQVFSLIIPGNVNMTRTHST 123
           ++ +MN+LM++  WDGK+P P IL PK        P+WTGKQ+FS I+PG +N T   ST
Sbjct: 580 KDWVMNLLMWVSNWDGKVPTPAILVPKKGELGKYTPIWTGKQLFSTIVPG-INFTGFSST 638

Query: 124 HPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRF 183
           H   E    +  +SP D++V+++ G LL GI+ KK +G+S+G L+HI  LE G +   R 
Sbjct: 639 HNSKEK---FSDLSPIDSRVIIQQGELLAGIIDKKIIGSSAGGLIHITMLEKGPDETKRL 695

Query: 184 YGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPT 243
            G IQ +VNNWL+  G S                                          
Sbjct: 696 LGAIQQLVNNWLV--GRSF----------------------------------------- 712

Query: 244 PGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVN 303
              ++G+ DTIAD  T   I   I +AK  V +++ +     LE  PG T+ ++FE  VN
Sbjct: 713 ---TVGVSDTIADVSTLKTIVDIITQAKVQVHDLVVRGQKGKLETQPGRTMVESFEGLVN 769

Query: 304 RILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGF 363
            +LN ARD+ G  A+ SL E NN+KA V +GSKGS INISQ+IACVGQQNVEGKRIP+GF
Sbjct: 770 IVLNTARDQAGREAQGSLDETNNIKATVTSGSKGSFINISQIIACVGQQNVEGKRIPYGF 829

Query: 364 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 423
             RTLPH+ KDD GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQR
Sbjct: 830 NHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQR 889

Query: 424 RLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRF 483
           RL+KAMESVM  YD TVRN+ G++IQ  YGEDG+    VE QR ++  L+  +FE KY F
Sbjct: 890 RLVKAMESVMTRYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESHKLNKVQFEKKYVF 949

Query: 484 DPSNE 488
           DPS+E
Sbjct: 950 DPSDE 954



 Score =  171 bits (432), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 127/194 (65%), Gaps = 9/194 (4%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+++  E+  V+ F G YVNYRHLA LCDVMT +GHLMAITRHGINR D+
Sbjct: 1401 IIQVLGIEAVRRALLNEIRQVISFDGAYVNYRHLACLCDVMTFRGHLMAITRHGINRDDS 1460

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G L+RCSFEETV++LMDAA  +E DP+ GVSEN+++GQL  +GTG  DL+LDA+K  + I
Sbjct: 1461 GPLVRCSFEETVEILMDAAMFSEGDPLTGVSENVMLGQLAPLGTGIMDLVLDAKKLANAI 1520

Query: 893  EIPLA--TGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFS 950
            E   +    +M G    +      P   +P  TP+A STP ++A     +  +PGG  FS
Sbjct: 1521 EYEASEIQQVMQGLDNEWRSPDQGPG--TPMATPFA-STPGFSA----SSPFSPGGGSFS 1573

Query: 951  PSVAGEDQLSKQAN 964
            P+      ++  A+
Sbjct: 1574 PAAGAFSPMASPAS 1587



 Score =  149 bits (376), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/95 (72%), Positives = 76/95 (80%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+IACVGQQNVEGKRIP+GF  RTLPH+ KDD GPESRGFVENSYL GLTP EFFFHAM
Sbjct: 809  SQIIACVGQQNVEGKRIPYGFNHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAM 868

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
            GGREGLIDTAVKTAET  +   L +   +    YD
Sbjct: 869  GGREGLIDTAVKTAETGYIQRRLVKAMESVMTRYD 903



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 98/166 (59%), Gaps = 29/166 (17%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD-PTRISPWLLRIELDRKRMTDK 1587
            L  VTANT+IYYDPDP NTV+ EDQEFV  YYEMPD D P   SPWLLRIEL+ K M DK
Sbjct: 1206 LADVTANTSIYYDPDPMNTVVEEDQEFVASYYEMPDEDTPIARSPWLLRIELNPKMMADK 1265

Query: 1588 KLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLV 1647
            KLT                            M  I+ ++ + +G DL+CIF DDNA++LV
Sbjct: 1266 KLT----------------------------MGEIAAQVESEYGQDLSCIFTDDNADRLV 1297

Query: 1648 LRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEETDRSFVKVDFVE 1693
            LRIRIM+ ++ K+Q   +     EDD FL+ +E    + +K+  +E
Sbjct: 1298 LRIRIMSDEEEKLQRSGETAVGQEDDTFLKRVEHNMLTQMKLRGIE 1343



 Score =  116 bits (291), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 60/73 (82%)

Query: 520  EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 579
            E+  V+ F G YVNYRHLA LCDVMT +GHLMAITRHGINR D+G L+RCSFEETV++LM
Sbjct: 1417 EIRQVISFDGAYVNYRHLACLCDVMTFRGHLMAITRHGINRDDSGPLVRCSFEETVEILM 1476

Query: 580  DAAAHAEADPMRG 592
            DAA  +E DP+ G
Sbjct: 1477 DAAMFSEGDPLTG 1489



 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 110/215 (51%), Gaps = 28/215 (13%)

Query: 592  GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
            GYIQRRL+KAMESVM  YD TVRN+ G++IQ  YGEDG+    VE QR ++  L+  +FE
Sbjct: 885  GYIQRRLVKAMESVMTRYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESHKLNKVQFE 944

Query: 652  DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELE-KEMVDHFSWKQLRRIFNEDV-LR 709
             KY FDPS+E +L  + N     +L    D+I ++   +       ++L ++  + V LR
Sbjct: 945  KKYVFDPSDE-ELGCVPN--CPDQLYLEPDIIKDIRTNQRTQQLLREELAQLQKDRVNLR 1001

Query: 710  ELMGS------GDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQRWK 763
             ++ S       D  +++     +L E+ + L  I      ++  P +L     I     
Sbjct: 1002 VILASRGQGQESDNAAQIPVNIRRLVENAQQLFSI------DMRKPSSLHPSRII----- 1050

Query: 764  LWGNENLRFLCKIIFVLSV--RKSVEKEMNTVLQF 796
                E ++ LCK I V+    R S+E + N  L F
Sbjct: 1051 ----EGVKELCKKIIVVQGDDRLSIEAQENATLFF 1081



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 38/50 (76%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           E+   LG+DP++ARPDW+++T++PVPP  VRP+V + G AR ++ + + L
Sbjct: 254 EDCFALGLDPRWARPDWLVMTLMPVPPPHVRPSVAIDGMARGEDDLTHNL 303



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/33 (72%), Positives = 28/33 (84%)

Query: 1499 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            IITPQ+NRPVMGIVQD+L   +K TKRD+FL K
Sbjct: 548  IITPQSNRPVMGIVQDSLLGAQKFTKRDIFLTK 580


>gi|356605950|gb|AET25006.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 5
            KK-2011]
          Length = 614

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/408 (55%), Positives = 278/408 (68%), Gaps = 42/408 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+G D++SKQA  NATLL   L+RSTLCTK +  + +L++EAF+WL+GEIE RFQ A   
Sbjct: 226  VSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQSAIAQ 285

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  +  Q+                 V  K +  G  R + + +  K    P    F
Sbjct: 286  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVF 345

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            +  +             A    E   D   K   T      L +VT NTAIYYDPDP+NT
Sbjct: 346  LTGA-------------AAKDPEKAKDVLCKLEHTT-----LKKVTCNTAIYYDPDPKNT 387

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            VI ED+E+V+++YEMPD D TR SPWLLRIELDRK M DKKLTME I+++I+ GFG D++
Sbjct: 388  VIAEDEEWVSIFYEMPDHDLTRTSPWLLRIELDRKSMVDKKLTMEMIADRIHGGFGTDVH 447

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV R+RI + DD     +E+ VDKMEDD+FLRCIEANMLSD+TLQGI  I
Sbjct: 448  TIYTDDNAEKLVFRLRI-SGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPQI 506

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYM  P TD KKRIIIT  G FKA+ADW+LETDGT+L++VLSER +DP+RT SNDICE
Sbjct: 507  SKVYMSQPNTDDKKRIIITPEGGFKAVADWILETDGTALLRVLSERQIDPIRTTSNDICE 566

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1337
            IF+VLGIEAVRKS+EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLM
Sbjct: 567  IFEVLGIEAVRKSIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLM 614



 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/138 (73%), Positives = 117/138 (84%)

Query: 359 IPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 418
           IPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET
Sbjct: 1   IPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 60

Query: 419 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 478
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 61  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 120

Query: 479 DKYRFDPSNERPTLRNVS 496
             +R D ++ +   +N S
Sbjct: 121 RDFRMDLTDNKFLRKNYS 138



 Score =  164 bits (415), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 85/152 (55%), Positives = 103/152 (67%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D TR SPWLLRIELDRK M DKK
Sbjct: 369  LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLTRTSPWLLRIELDRKSMVDKK 428

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+ GFG D++T                            I+ DDNAEKLV 
Sbjct: 429  LTMEMIADRIHGGFGTDVHT----------------------------IYTDDNAEKLVF 460

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI + DD     +E+ VDKMEDD+FLRCIE
Sbjct: 461  RLRI-SGDDKGDGGQEEQVDKMEDDVFLRCIE 491



 Score =  134 bits (337), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 70/86 (81%)

Query: 1025 IPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 1084
            IPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET
Sbjct: 1    IPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 60

Query: 1085 VNVLVFLFQVTANTAIYYDPDPQNTV 1110
              +   L +   +  + YD   +N++
Sbjct: 61   GYIQRRLIKAMESVMVNYDGTVRNSL 86



 Score =  131 bits (330), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 100/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 61  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 120

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++ + LR+ ++EDV+RE+  S D IS +E                        
Sbjct: 121 RDFRMDLTDNKFLRKNYSEDVVREIQESTDGISLVE------------------------ 156

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +I+  Q+
Sbjct: 157 -----------SEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQK 195



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 42/51 (82%), Gaps = 3/51 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 820
           +C+I  VL   +VRKS+EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLM
Sbjct: 564 ICEIFEVLGIEAVRKSIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLM 614



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 32/36 (88%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 551
           S+EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLM
Sbjct: 579 SIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLM 614


>gi|50346863|gb|AAT75141.1| RNA polymerase 2 [Caenorhabditis angaria]
          Length = 601

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/405 (55%), Positives = 284/405 (70%), Gaps = 42/405 (10%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D +SKQA  NATLL   L+RSTLCTK +  + +L++EAF+WL+GEIE+RF QA  I
Sbjct: 215  VCGNDDISKQAQYNATLLMNILLRSTLCTKKMCTSSKLNTEAFDWLLGEIESRFMQA--I 272

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
            A  G+       +      ++L         P ++  +   + AG++           +E
Sbjct: 273  AQPGE-------MVGALAAQSLGE-------PATQMTLNTFHYAGVSAKNVTLGVPRLKE 318

Query: 1073 GLIDTAVKTAETVNVLVFLF-----------------------QVTANTAIYYDPDPQNT 1109
              I    K  +T ++ VFL                        +VTANTAIYYDPDP+NT
Sbjct: 319  --IINVSKQLKTPSLTVFLTGAAAKDAEKAKDVLCKLEHTTLKKVTANTAIYYDPDPKNT 376

Query: 1110 VIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            VI ED+E+V+++YEMPDFD TR SPWLLRIELDRKRMTDKKLTME I+++I++GFG D++
Sbjct: 377  VIGEDEEWVSIFYEMPDFDTTRTSPWLLRIELDRKRMTDKKLTMEMIADRIHSGFGQDVH 436

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             I+ DDNAEKLV R+RI   +D   + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI
Sbjct: 437  TIYTDDNAEKLVFRLRIA-GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAI 495

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KVYM+ P TD KKRIIITE G FK+I +W+LETDGT+L++VLSER +DPVRT SNDICE
Sbjct: 496  SKVYMNQPNTDDKKRIIITEEGGFKSITEWILETDGTALLRVLSERQIDPVRTSSNDICE 555

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1334
            IF+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKG
Sbjct: 556  IFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKG 600



 Score =  192 bits (488), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/120 (75%), Positives = 105/120 (87%)

Query: 370 HFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 429
           HFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM
Sbjct: 1   HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 60

Query: 430 ESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           ESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE  +R D +++R
Sbjct: 61  ESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNNAVFERDFRTDLTDDR 120



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/152 (57%), Positives = 108/152 (71%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+NTVI ED+E+V+++YEMPDFD TR SPWLLRIELDRKRMTDKK
Sbjct: 358  LKKVTANTAIYYDPDPKNTVIGEDEEWVSIFYEMPDFDTTRTSPWLLRIELDRKRMTDKK 417

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I++GFG D++T                            I+ DDNAEKLV 
Sbjct: 418  LTMEMIADRIHSGFGQDVHT----------------------------IYTDDNAEKLVF 449

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   +D   + +E+ VDKMEDD+FLRCIE
Sbjct: 450  RLRIA-GEDKAAEGQEEQVDKMEDDVFLRCIE 480



 Score =  130 bits (327), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 98/170 (57%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 50  GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNNAVFE 109

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D +++R L   + EDV+REL  S + I ++E                        
Sbjct: 110 RDFRTDLTDDRFLENSYTEDVIRELQESSEAIEKIE------------------------ 145

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G++ +VLPCNL  +++  Q+
Sbjct: 146 -----------SEWAQLSEDRRLLRKIFPKGDAKIVLPCNLQRLMWNAQK 184



 Score =  112 bits (279), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 60/75 (80%)

Query: 1036 HFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVT 1095
            HFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET  +   L +  
Sbjct: 1    HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 60

Query: 1096 ANTAIYYDPDPQNTV 1110
             +  + YD   +N++
Sbjct: 61   ESVMVNYDGTVRNSL 75



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/48 (64%), Positives = 39/48 (81%), Gaps = 3/48 (6%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 817
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKG
Sbjct: 553 ICEIFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKG 600



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/33 (72%), Positives = 29/33 (87%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 548
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKG
Sbjct: 568 AIEREMHNVISFDGSYVNYRHLALLCDVMTAKG 600


>gi|397135922|gb|AFO11456.1| RNA polymerase I, partial [Pachysolen tannophilus]
          Length = 870

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/421 (50%), Positives = 273/421 (64%), Gaps = 55/421 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MNIL ++P WDG +P+P I+KPKPLWTGKQ+ S++IP  +N+ R       DE    
Sbjct: 355 DQVMNILYWIPTWDGVIPEPTIIKPKPLWTGKQMLSMVIPKGINIERK------DEK--- 405

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
           + ++S  DT +++  G +++G++ KK++G + G L+H    E G +VC   +GNIQ VVN
Sbjct: 406 FTYLSKDDTGMLIIDGEIMLGVVNKKTVGATGGGLIHAVMREKGPQVCADLFGNIQKVVN 465

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 466 YWLL---------------------------------------HN-------GFSIGIGD 479

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T  +I   I KAK+ V E+I +A N +L P PG TLR++FE  V+++LN ARD 
Sbjct: 480 TIADAPTVRQITNTILKAKDKVQEIILRAQNNELPPEPGMTLRESFEQNVSQVLNQARDD 539

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G +   +L + NN+K MV AGSKGSNINISQ+ ACVGQQ VEGKRIPFGF  R+LPHF 
Sbjct: 540 VGKATADALKDLNNVKQMVSAGSKGSNINISQMSACVGQQIVEGKRIPFGFSDRSLPHFT 599

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PESRGFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 600 KDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 659

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MVHYD T RNS+G ++Q  YGEDGL    VE Q IDT+  + + FE +YR D  ++  ++
Sbjct: 660 MVHYDGTTRNSLGNVLQFIYGEDGLDATQVEKQAIDTIPGTDEAFERRYRIDVMDQSKSI 719

Query: 493 R 493
           R
Sbjct: 720 R 720



 Score =  146 bits (368), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF  R+LPHF KDDY PESRGFVENSYL GLTP EFFFHAM
Sbjct: 570  SQMSACVGQQIVEGKRIPFGFSDRSLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAM 629

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 630  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 671



 Score = 97.1 bits (240), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G ++Q  YGEDGL    VE Q IDT+  + + FE
Sbjct: 646 GYIQRRLVKALEDIMVHYDGTTRNSLGNVLQFIYGEDGLDATQVEKQAIDTIPGTDEAFE 705

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YR D  ++ +                      +  E++++ S              E+
Sbjct: 706 RRYRIDVMDQSK---------------------SIRPELIEYGS--------------EI 730

Query: 712 MGSGDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVI 756
           +G  ++ S L++E+ +L EDR  LR E F +G+    LP N+  VI
Sbjct: 731 IGDVNLQSILDEEYNQLLEDRRYLREECFLNGDFQWPLPVNIRRVI 776



 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 44/57 (77%)

Query: 955  GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            G  +L +++  NATLLFQCL+RS L T+ + E YRLS  AFEW++G+IE++FQ++ V
Sbjct: 814  GSGKLYEESTANATLLFQCLIRSRLATRRIVEEYRLSKIAFEWVLGQIEDQFQRSVV 870



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 1/56 (1%)

Query: 1496 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPE 1551
            P QI++PQ+N+PVMGIVQDTL  +RKMT RDVF++       +Y+ P   + VIPE
Sbjct: 319  PLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDVFIEYDQVMNILYWIPT-WDGVIPE 373



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 33/41 (80%)

Query: 35 LGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
          LG +  +ARP+WM++TVLPVPP +VRP+V ++ +AR ++ +
Sbjct: 33 LGFNEDYARPEWMIITVLPVPPPAVRPSVQVNDTARGEDDL 73


>gi|397135916|gb|AFO11453.1| RNA polymerase I, partial [Babjeviella inositovora]
          Length = 872

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/412 (52%), Positives = 265/412 (64%), Gaps = 55/412 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MN+  ++P WDG +P+P ILKPKPLWTGKQ+ SL IP  +++ R           G 
Sbjct: 357 DQVMNMCFWIPDWDGVIPEPAILKPKPLWTGKQLLSLCIPKGIHLQRF---------DGG 407

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
             W SP D+ +++  G +L G++ KK++G ++G L+H    E G  VC + +GN+Q VVN
Sbjct: 408 ASWSSPTDSGMLIIDGEVLFGVVDKKTVGATAGGLIHTVMREKGSAVCAKLFGNMQKVVN 467

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 468 FWLL---------------------------------------HN-------GFSIGIGD 481

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T  EI   I +AKE V E+I  AH   LEP PG TLR++FEN V+R+LN ARD 
Sbjct: 482 TIADASTMREITNTISEAKEKVQEIILLAHLNTLEPEPGMTLRESFENNVSRVLNQARDT 541

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ +L + NN+K MVV GSKGS INISQ+ ACVGQQ VEG+RIPFGF  RTLPHF 
Sbjct: 542 AGRSAEMNLKDLNNVKQMVVCGSKGSFINISQMSACVGQQIVEGRRIPFGFADRTLPHFT 601

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 602 KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 661

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           MVHYD T RNS+G +IQ  YGEDG+ G  VE Q IDT+  S   F+ +YR D
Sbjct: 662 MVHYDSTARNSLGDVIQFVYGEDGIDGTQVEKQTIDTIPGSDVVFDRRYRID 713



 Score =  145 bits (366), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEG+RIPFGF  RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 572  SQMSACVGQQIVEGRRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 632  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDSTARNSL 673



 Score = 94.7 bits (234), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 85/166 (51%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G +IQ  YGEDG+ G  VE Q IDT+  S   F+
Sbjct: 648 GYIQRRLVKALEDIMVHYDSTARNSLGDVIQFVYGEDGIDGTQVEKQTIDTIPGSDVVFD 707

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YR               D+L    G    + E   E+V      +L++I +E      
Sbjct: 708 RRYRI--------------DLLDNTHGINPSLLESGSEIVGDV---KLQKIVDE------ 744

Query: 712 MGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEVI 756
                       E+ +L  DR+ LRE+ F +G+ N  LP NL  V+
Sbjct: 745 ------------EYNQLLSDRKYLREVCFPNGDHNWPLPVNLRRVV 778



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 43/59 (72%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            + G+ +L ++A  NATLLF CL+RS L  + V E YRL+  AF+W+VGE+E +FQ++ V
Sbjct: 814  IRGKTELMQEAQSNATLLFLCLLRSRLSARRVLEEYRLNRLAFDWIVGEVEAQFQKSIV 872



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   P QII+PQ+N+P+MGIVQDTL  VRKMT RD F++        ++ PD  + V
Sbjct: 314  LSQICAVPLQIISPQSNKPIMGIVQDTLCGVRKMTLRDNFVEYDQVMNMCFWIPD-WDGV 372

Query: 1549 IPE 1551
            IPE
Sbjct: 373  IPE 375


>gi|120561215|gb|ABM26993.1| RNA polymerase II largest subunit, partial [Furculomyces
           boomerangus]
          Length = 1024

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/410 (51%), Positives = 270/410 (65%), Gaps = 50/410 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           +MN+LM +P WDG +P PCILKP+PLW+GKQ++S++IP  VN  R +STHPD+E    Y 
Sbjct: 485 VMNLLMTIPDWDGIVPTPCILKPQPLWSGKQIYSMVIPKGVNCHRYNSTHPDNE----YT 540

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           W SPGDT++++E+G LL G LCK+++G     L+H+   ELG +   +F+G  Q +VN W
Sbjct: 541 WCSPGDTRIIIENGELLSGALCKRTVGAVDSGLIHVIRNELGPDYAKKFFGGTQKLVNYW 600

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
            L               QT                               G S+GIGDTI
Sbjct: 601 FL---------------QT-------------------------------GFSVGIGDTI 614

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD  T   +   I++    V E+I+ A    LE  PG TL++TFE++VN  LN ARD+ G
Sbjct: 615 ADDSTMQTVGDIIRECYMRVDELIRDAQEDRLERLPGMTLKETFESKVNGELNRARDQAG 674

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            + +  L E NN++ MVV+GSKGS IN+SQ+ A VGQQNVEGKRIPFGF+ RTLPHF KD
Sbjct: 675 KTVQNRLKECNNVRRMVVSGSKGSYINVSQMTASVGQQNVEGKRIPFGFKNRTLPHFSKD 734

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           DY P+SRGFVENSYL GLTP EF+FHAMGGREGLIDTAVKTAETGYIQRRL+KA+E +MV
Sbjct: 735 DYSPQSRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMV 794

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           HYD TVRNS+G +I   YGEDG+    +E Q + T+ +S  +FE+ YR D
Sbjct: 795 HYDGTVRNSLGSIIDFVYGEDGMDACFLETQNLQTLTISDNRFENMYRVD 844



 Score =  147 bits (372), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ A VGQQNVEGKRIPFGF+ RTLPHF KDDY P+SRGFVENSYL GLTP EF+FHAM
Sbjct: 703  SQMTASVGQQNVEGKRIPFGFKNRTLPHFSKDDYSPQSRGFVENSYLRGLTPQEFYFHAM 762

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 763  GGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTVRNSL 804



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 105/220 (47%), Gaps = 48/220 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD TVRNS+G +I   YGEDG+    +E Q + T+ +S  +FE
Sbjct: 779 GYIQRRLVKALEDIMVHYDGTVRNSLGSIIDFVYGEDGMDACFLETQNLQTLTISDNRFE 838

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           + YR D                  +M S    S       D   +  L+ I   D ++ L
Sbjct: 839 NMYRVD------------------VMDSSKGFSS------DSLDFSILKNIEANDSVQLL 874

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNL------MEVIFILQRWK- 763
                    L++E+ +L  DR+ L+  I ++GES   +P N+       + IF + R K 
Sbjct: 875 ---------LDEEFNQLTLDRKELQSFICTTGESTHPMPANMPRLILNAQQIFHIDRRKP 925

Query: 764 -----LWGNENLRFLCKIIFVLSV--RKSVEKEMNTVLQF 796
                 +  E +R L   + V+    + S E +MN  L F
Sbjct: 926 SNLHPSYVIEGIRQLADRLVVIRGDDKLSTEAQMNATLLF 965



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 42/59 (71%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            + G+D+LS +A  NATLLF+  +RS L TK V E + L + +F+W++GE+E  F++A V
Sbjct: 947  IRGDDKLSTEAQMNATLLFKIHLRSFLSTKRVIEEFHLDTNSFDWIIGEVEACFKRAIV 1005



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 39/46 (84%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
           E+++ +G++ +FARP+W++++V+PVPPL+VRP++ M  + ++++ +
Sbjct: 156 EDALAMGLNVQFARPEWLIISVMPVPPLAVRPSIQMDATRQSEDDL 201



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 25/135 (18%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            V  I + P+QI++PQ+N PVMGIVQDTL A+   TKRD  L          YD       
Sbjct: 440  VTEICMVPKQIVSPQSNMPVMGIVQDTLCAINIFTKRDTLLQ---------YD------- 483

Query: 1549 IPEDQEFV-NVYYEMPDFDPTRISPWLLRIE--LDRKRMTDKKLTMEAISEKINAGFGDD 1605
                  FV N+   +PD+D    +P +L+ +     K++    +       + N+   D+
Sbjct: 484  ------FVMNLLMTIPDWDGIVPTPCILKPQPLWSGKQIYSMVIPKGVNCHRYNSTHPDN 537

Query: 1606 LNTPLSPTDKKLTME 1620
              T  SP D ++ +E
Sbjct: 538  EYTWCSPGDTRIIIE 552


>gi|290983563|ref|XP_002674498.1| RNA polymerase II [Naegleria gruberi]
 gi|284088088|gb|EFC41754.1| RNA polymerase II [Naegleria gruberi]
          Length = 1757

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/460 (49%), Positives = 287/460 (62%), Gaps = 57/460 (12%)

Query: 39  PKFARPDWMLV--TVLPVPPLSVRPAVVMHGSARNQEQMMNILMFLPIWDGKMPQPCILK 96
           P+  RP   LV  T+L    L+ R   +       ++ MMN LM L  +DGK+P P ILK
Sbjct: 491 PQSNRPVIALVQDTLLAASKLTRRDVFIA------KDLMMNCLMHLIDFDGKLPVPAILK 544

Query: 97  PKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY--QWISPGDTKVVVEHGSLLMGI 154
           PKPLWTGKQ+F+ ++P  VN+  T STH D  D   +    I   DTKV+++ G L+ G+
Sbjct: 545 PKPLWTGKQLFTFLLP-KVNLENTSSTHEDLTDKKDHLDHDIPEFDTKVLIDRGELVSGV 603

Query: 155 LCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTY 214
           L KKSLG+S GSL+HI   E G     +F G  Q V+N+WL+                  
Sbjct: 604 LDKKSLGSSHGSLIHIIVNEKGVNEGKKFLGQCQRVINHWLI------------------ 645

Query: 215 LEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDV 274
                                         G SIGIGDTIAD  T  +I+  I+KA++DV
Sbjct: 646 ----------------------------NRGFSIGIGDTIADKATMEQIEETIRKAEKDV 677

Query: 275 IEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAG 334
             +++ A    L    G T++Q+FENQVN++LN AR+  G  AKKSL + NN+K+MV AG
Sbjct: 678 KLIVKDAQEGKLRAEAGRTIQQSFENQVNKVLNKAREDAGNKAKKSLKDDNNIKSMVTAG 737

Query: 335 SKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 394
           SKGS INISQ+IACVGQQNVEGKRIP+GFR RTLPHF +DD+GPESRGFV NSYL GLTP
Sbjct: 738 SKGSYINISQIIACVGQQNVEGKRIPYGFRNRTLPHFAQDDHGPESRGFVANSYLRGLTP 797

Query: 395 SEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGE 454
            EFFFH MGGREGLIDTAVKT+ETGYIQRRLIKAME +MV YD TVR++ G ++Q  YGE
Sbjct: 798 QEFFFHTMGGREGLIDTAVKTSETGYIQRRLIKAMEDIMVKYDGTVRDAQGNVVQFLYGE 857

Query: 455 DGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLRN 494
           DG+    VE Q ID + LS  KF+DKY ++     P+  N
Sbjct: 858 DGMDAHKVESQSIDIMNLSDAKFQDKYWYNSLGSSPSFTN 897



 Score =  333 bits (853), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 209/545 (38%), Positives = 300/545 (55%), Gaps = 89/545 (16%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRF-----Q 1007
            + G D+LS +A  NATLLF   +RST  +K+V +   L+ EAF++LVGEI  RF     Q
Sbjct: 1009 IKGTDELSTEAQTNATLLFSMFLRSTFSSKVVLKELCLTQEAFDFLVGEIRMRFHNCLAQ 1068

Query: 1008 QAQVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  V  Q+                 V  K +  G  R + L +  K+   P    +
Sbjct: 1069 PGEMVGSVAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKELLNVAKNIKTPGLTIY 1128

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            + N Y+        F  A   +E L  T             L  VTA T+I YDP+P N+
Sbjct: 1129 LNNEYIGD------FEKAKMVKEDLEYTT------------LGHVTAATSIVYDPEPANS 1170

Query: 1110 VIPEDQEFVNVYY----EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFG 1165
            VI ED+EF+        +    D T ++PW LR ELD+  M+D  LTM  +++KI   F 
Sbjct: 1171 VIEEDREFIEELLEELKDTAVLDSTTLNPWSLRFELDKMMMSDT-LTMAQVAKKIQEEFQ 1229

Query: 1166 DDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVD-------KMEDD-------MFLR 1211
            +D+ C ++DDNA+KL+L +RI   D  K +D + A D       K+E++        FLR
Sbjct: 1230 NDITCFYSDDNADKLILVVRIHKDDKEKEKDAQVAKDPSDEVLRKLEEEDIENSTVEFLR 1289

Query: 1212 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKV 1271
             +E+NML+++ L+G + + KV++   + + KK  + + SG    +  W+L+T+G +L+ V
Sbjct: 1290 RLESNMLNELALKGYKDLKKVFLR--EENDKK--VFSSSG-VATVKQWVLDTEGCNLLAV 1344

Query: 1272 LSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMT 1331
            LS   VD   T SND+ EI  VLGIEA R ++ +EM  V++F G YVNYRHLA+LCDVMT
Sbjct: 1345 LSHPYVDHTITTSNDVNEILDVLGIEACRNALMREMRKVIEFDGSYVNYRHLAILCDVMT 1404

Query: 1332 AKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRM 1391
             +G LMAITRHGINR DTG LMRCSFEETV++L++AA  A+ D ++GVS N+++GQL  +
Sbjct: 1405 HRGGLMAITRHGINRSDTGPLMRCSFEETVEILIEAATFADTDTLKGVSANVMVGQLAPI 1464

Query: 1392 GTGCFDLLLDAEKCKDGIEIP------------------------LATGMMGGPAGMFFG 1427
            GTGCF L LD E  K  + +                         LAT   GG A  + G
Sbjct: 1465 GTGCFGLYLDEELLKQAVAVKPSFVTETKSMYGSLGATTPYHTSGLATPYHGGVATPYHG 1524

Query: 1428 SAATP 1432
             A++P
Sbjct: 1525 GASSP 1529



 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/322 (35%), Positives = 172/322 (53%), Gaps = 53/322 (16%)

Query: 679  SGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREI 738
            S +V+ +LE+E +++ + + LRR+   ++L EL   G       K+ +K+    E  +++
Sbjct: 1268 SDEVLRKLEEEDIENSTVEFLRRL-ESNMLNELALKG------YKDLKKVFLREENDKKV 1320

Query: 739  FSSGESNVVLP-------CNLMEVI-FILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEM 790
            FSS     V         CNL+ V+        +  + ++  +  ++ + + R ++ +EM
Sbjct: 1321 FSSSGVATVKQWVLDTEGCNLLAVLSHPYVDHTITTSNDVNEILDVLGIEACRNALMREM 1380

Query: 791  NTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDA 850
              V++F G YVNYRHLA+LCDVMT +G LMAITRHGINR DTG LMRCSFEETV++L++A
Sbjct: 1381 RKVIEFDGSYVNYRHLAILCDVMTHRGGLMAITRHGINRSDTGPLMRCSFEETVEILIEA 1440

Query: 851  AAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--------------- 895
            A  A+ D ++GVS N+++GQL  +GTGCF L LD E  K  + +                
Sbjct: 1441 ATFADTDTLKGVSANVMVGQLAPIGTGCFGLYLDEELLKQAVAVKPSFVTETKSMYGSLG 1500

Query: 896  ---------LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAYNALMSPG------ 939
                     LAT   GG A  + G A++P +    MTP  ++ +P Y    SP       
Sbjct: 1501 ATTPYHTSGLATPYHGGVATPYHGGASSPWTQG-AMTPLGRTPSPEYQGGFSPSPYNSAF 1559

Query: 940  --AAMTPGGP----GFSPSVAG 955
               A +P  P    G+SPS  G
Sbjct: 1560 SPVASSPTSPGHQGGYSPSSPG 1581



 Score =  150 bits (378), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 67/95 (70%), Positives = 77/95 (81%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+IACVGQQNVEGKRIP+GFR RTLPHF +DD+GPESRGFV NSYL GLTP EFFFH M
Sbjct: 746  SQIIACVGQQNVEGKRIPYGFRNRTLPHFAQDDHGPESRGFVANSYLRGLTPQEFFFHTM 805

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
            GGREGLIDTAVKT+ET  +   L +   +  + YD
Sbjct: 806  GGREGLIDTAVKTSETGYIQRRLIKAMEDIMVKYD 840



 Score =  114 bits (285), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 62/74 (83%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            +EM  V++F G YVNYRHLA+LCDVMT +G LMAITRHGINR DTG LMRCSFEETV++L
Sbjct: 1378 REMRKVIEFDGSYVNYRHLAILCDVMTHRGGLMAITRHGINRSDTGPLMRCSFEETVEIL 1437

Query: 579  MDAAAHAEADPMRG 592
            ++AA  A+ D ++G
Sbjct: 1438 IEAATFADTDTLKG 1451



 Score =  102 bits (255), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 93/173 (53%), Gaps = 21/173 (12%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAME +MV YD TVR++ G ++Q  YGEDG+    VE Q ID + LS  KF+
Sbjct: 822 GYIQRRLIKAMEDIMVKYDGTVRDAQGNVVQFLYGEDGMDAHKVESQSIDIMNLSDAKFQ 881

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIF-NEDVLRE 710
           DKY ++                   +GS    +   +  V   S   L+  F +  V  E
Sbjct: 882 DKYWYNS------------------LGSSPSFTNPTESSVSMPSGGILKESFISTKVYDE 923

Query: 711 LMGS-GDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVIFILQR 761
           ++      +S++ +E++ L EDR  LR EIF + E+ +V+P NL  +I   Q+
Sbjct: 924 ILKDPATYLSKVREEYKTLMEDRHILRTEIFPNAENKIVMPVNLKRIIKNAQK 976



 Score = 94.0 bits (232), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 38/179 (21%)

Query: 1521 KMTKRDV---FLDKVTANTAIYYDPDPQNTVIPEDQEFVNVYY----EMPDFDPTRISPW 1573
            KM K D+    L  VTA T+I YDP+P N+VI ED+EF+        +    D T ++PW
Sbjct: 1141 KMVKEDLEYTTLGHVTAATSIVYDPEPANSVIEEDREFIEELLEELKDTAVLDSTTLNPW 1200

Query: 1574 LLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDD 1633
             LR ELD+  M+D                              LTM  +++KI   F +D
Sbjct: 1201 SLRFELDKMMMSD-----------------------------TLTMAQVAKKIQEEFQND 1231

Query: 1634 LNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEETDRSFVKVDFV 1692
            + C ++DDNA+KL+L +RI   D  K +D + A D    D  LR +EE D     V+F+
Sbjct: 1232 ITCFYSDDNADKLILVVRIHKDDKEKEKDAQVAKDP--SDEVLRKLEEEDIENSTVEFL 1288



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 31/38 (81%)

Query: 1494 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            + PR IITPQ+NRPV+ +VQDTL A  K+T+RDVF+ K
Sbjct: 483  MVPRNIITPQSNRPVIALVQDTLLAASKLTRRDVFIAK 520



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 28  PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQE 73
           P E+  +LG D   ARP+WM++T LP+PP  VRP+ V HGSA   E
Sbjct: 190 PAEDLELLGFDKDNARPEWMILTCLPIPPPQVRPS-VHHGSADRSE 234


>gi|157841384|gb|ABV83146.1| RNA polymerase 2 [rhabditoid sp. PDL15]
          Length = 587

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/392 (56%), Positives = 273/392 (69%), Gaps = 45/392 (11%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V GED++SKQA  NATLL   L+RSTLC+K VAE YRL+SEAFEWL+GEIE RFQQA   
Sbjct: 216  VXGEDRISKQAQYNATLLMNILLRSTLCSKQVAEKYRLNSEAFEWLLGEIETRFQQAIAQ 275

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
              +++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 276  PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKEIINVSKQPK----- 328

Query: 1051 ENSYLAGLTPS-EFFFHAMGGR--EGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQ 1107
                    TPS   F      R  E   D   K   T      L +VTANTAIYYDPDP+
Sbjct: 329  --------TPSLTVFLQGAAARDAEKAKDVLCKLEHTT-----LRKVTANTAIYYDPDPK 375

Query: 1108 NTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
             T I ED E+V+++YEMPDFDP+R SPWLLR+ELDRKRMTDKKLTMEAI+++I++GFG D
Sbjct: 376  MTCIEEDAEWVSIFYEMPDFDPSRCSPWLLRLELDRKRMTDKKLTMEAIADRIHSGFGGD 435

Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIE 1227
            LN I+ DDNAEKLV R+RI N+D+ K +  ++ VDKMEDD+FLRC+E+NMLSD+TLQGIE
Sbjct: 436  LNVIYTDDNAEKLVFRLRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGIE 495

Query: 1228 AIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDI 1287
            AI KVYMH P TD KK+ I+T+ G FK+IA+WLLETDGT+L+KVLSE++VDPVRT SNDI
Sbjct: 496  AIAKVYMHKPTTDDKKKTIVTQDGSFKSIAEWLLETDGTALLKVLSEQNVDPVRTTSNDI 555

Query: 1288 CEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVN 1319
            CEIF+VLGIEAVRK++E+EMN V+ F G YVN
Sbjct: 556  CEIFEVLGIEAVRKAIEREMNQVISFDGSYVN 587



 Score =  199 bits (507), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 97/133 (72%), Positives = 111/133 (83%), Gaps = 7/133 (5%)

Query: 369 PHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKA 428
           PHFIKDDYGPES+GFVENSYLAGLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKA
Sbjct: 1   PHFIKDDYGPESKGFVENSYLAGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKA 60

Query: 429 MESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
           MESVMV+YD TVRNS+ Q+IQLRYGEDGL G  VE+Q + ++  SH  FE +++ D ++E
Sbjct: 61  MESVMVNYDGTVRNSJAQMIQLRYGEDGLDGMWVENQTMPSMKPSHALFEREFKLDLADE 120

Query: 489 RPTLRNVSSLRRV 501
           R       SLRR+
Sbjct: 121 R-------SLRRM 126



 Score =  179 bits (453), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 87/152 (57%), Positives = 108/152 (71%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+ T I ED E+V+++YEMPDFDP+R SPWLLR+ELDRKRMTDKK
Sbjct: 359  LRKVTANTAIYYDPDPKMTCIEEDAEWVSIFYEMPDFDPSRCSPWLLRLELDRKRMTDKK 418

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L                            TMEAI+++I++GFG DLN I+ DDNAEKLV 
Sbjct: 419  L----------------------------TMEAIADRIHSGFGGDLNVIYTDDNAEKLVF 450

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N+D+ K +  ++ VDKMEDD+FLRC+E
Sbjct: 451  RLRIANADNDKGEGADEQVDKMEDDVFLRCVE 482



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 101/170 (59%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q+IQLRYGEDGL G  VE+Q + ++  SH  FE
Sbjct: 51  GYIQRRLIKAMESVMVNYDGTVRNSJAQMIQLRYGEDGLDGMWVENQTMPSMKPSHALFE 110

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +++ D ++ER LRR+F ++V+R+L  + + + E E                        
Sbjct: 111 REFKLDLADERSLRRMFTDEVVRDLQSTPESLKEXE------------------------ 146

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF  G+S VVLPCNL  +I+  Q+
Sbjct: 147 -----------SEWXQLEEDRXLLRKIFPKGDSKVVLPCNLQRLIWNAQK 185



 Score =  114 bits (284), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 52/76 (68%), Positives = 60/76 (78%)

Query: 1035 PHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQV 1094
            PHFIKDDYGPES+GFVENSYLAGLTP EFFFHAMGGREGLIDTAVKTAET  +   L + 
Sbjct: 1    PHFIKDDYGPESKGFVENSYLAGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKA 60

Query: 1095 TANTAIYYDPDPQNTV 1110
              +  + YD   +N++
Sbjct: 61   MESVMVNYDGTVRNSJ 76


>gi|262303445|gb|ACY44315.1| RNA polymerase largest subunit [Idiogaryops pumilis]
          Length = 654

 Score =  422 bits (1085), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/298 (66%), Positives = 230/298 (77%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
            E MMN+L++LP+W+GKMP P ILKP+PLWTGKQ+FSLIIPGNVN+ RTHSTHPD+ED G
Sbjct: 17  HEDMMNLLLYLPLWNGKMPMPTILKPRPLWTGKQLFSLIIPGNVNLIRTHSTHPDEEDEG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++EHG L+ GI+CKK++G SSGSL+H+ F ELGHE+ G FY NIQTVV
Sbjct: 77  PYRWISPGDTKVIIEHGQLIAGIVCKKTVGASSGSLMHVVFAELGHEIAGTFYDNIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEG +IGIGDTIAD QTY+EIQ AI+KAK DV+EVI+KAHN +LEPTPG      
Sbjct: 137 NNWLLLEGXTIGIGDTIADQQTYVEIQSAIRKAKGDVVEVIEKAHNDELEPTPG------ 190

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 191 ----------------------------------------NTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTG SA+KSL+E+N+ K+MVVAGSKGS INISQVIACVGQQNVEG+RIPFGFRKRTLP
Sbjct: 211 KTGASAQKSLSEFNHFKSMVVAGSKGSKINISQVIACVGQQNVEGRRIPFGFRKRTLP 268



 Score =  241 bits (615), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 133/224 (59%), Positives = 148/224 (66%), Gaps = 26/224 (11%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V GED+LS QAN+NAT+LF+ L+RSTLCTK VAE +RLS+EAFEWL+GEIE RF QA V 
Sbjct: 454  VKGEDRLSIQANDNATILFRALIRSTLCTKRVAEEFRLSTEAFEWLLGEIETRFNQAMVX 513

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPS-EFFFHAMGGR 1071
               G   V  K +  G  +  L   I     P+             TPS   F    G R
Sbjct: 514  PXAG---VSAKNVTLGVPR--LKEIINISKKPK-------------TPSLTVFLTGAGAR 555

Query: 1072 --EGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDP 1129
              E   D   +   T      L +VTANT IYYDP PQNTVI  DQEFVNVYYEMPDFDP
Sbjct: 556  DAEKAKDVLCRLEHTT-----LRKVTANTTIYYDPFPQNTVIAXDQEFVNVYYEMPDFDP 610

Query: 1130 TRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFN 1173
            TRISPWLLR+ELDRKRMTDKKLTME I+EKINAGFGDDLNCIFN
Sbjct: 611  TRISPWLLRVELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFN 654



 Score =  153 bits (387), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 71/79 (89%), Positives = 73/79 (92%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANT IYYDP PQNTVI  DQEFVNVYYEMPDFDPTRISPWLLR+ELDRKRMTDKK
Sbjct: 572  LRKVTANTTIYYDPFPQNTVIAXDQEFVNVYYEMPDFDPTRISPWLLRVELDRKRMTDKK 631

Query: 1589 LTMEAISEKINAGFGDDLN 1607
            LTME I+EKINAGFGDDLN
Sbjct: 632  LTMEQIAEKINAGFGDDLN 650



 Score =  129 bits (324), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/154 (45%), Positives = 87/154 (56%), Gaps = 35/154 (22%)

Query: 604 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERQ 663
           SVMV YD T RNS GQ+IQ RYGEDGL G  VE Q + T+  S++ FE +++F+ SNER 
Sbjct: 307 SVMVTYDGTARNSTGQVIQFRYGEDGLDGTCVEFQALPTLKPSNRAFERRFKFEASNERY 366

Query: 664 LRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEK 723
           LRRIF EDV++E+M S   + ELE                                   +
Sbjct: 367 LRRIFTEDVVQEIMASNTXLGELE-----------------------------------R 391

Query: 724 EWEKLCEDREALREIFSSGESNVVLPCNLMEVIF 757
           EWE L +DRE LR IF +G+S VVLPCNL   IF
Sbjct: 392 EWEILKKDREELRTIFPTGDSKVVLPCNLSRXIF 425



 Score = 73.9 bits (180), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 43/59 (72%)

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           SVMV YD T RNS GQ+IQ RYGEDGL G  VE Q + T+  S++ FE +++F+ SNER
Sbjct: 307 SVMVTYDGTARNSTGQVIQFRYGEDGLDGTCVEFQALPTLKPSNRAFERRFKFEASNER 365



 Score = 60.5 bits (145), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 31/38 (81%)

Query: 998  LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            + G   ++   +QVIACVGQQNVEG+RIPFGFRKRTLP
Sbjct: 231  VAGSKGSKINISQVIACVGQQNVEGRRIPFGFRKRTLP 268


>gi|83320466|gb|ABC02860.1| RNA polymerase II largest subunit, partial [Synchytrium
           macrosporum]
          Length = 808

 Score =  422 bits (1084), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/384 (55%), Positives = 260/384 (67%), Gaps = 52/384 (13%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           MMN+LM++P WDG +P PCI+KP PLWTGKQ  SLIIP N+N+T  H+ HPD E      
Sbjct: 476 MMNLLMWVPDWDGTLPTPCIIKPIPLWTGKQAMSLIIP-NINLTAYHAAHPDKEVGDN-- 532

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGS-LLHICFLELGHEVCGRFYGNIQTVVNN 193
             SPGDTKV++EHG L+MGILCKK++G+S+G  ++H   +E G E   +F+   Q VVN 
Sbjct: 533 --SPGDTKVLIEHGELVMGILCKKTVGSSAGGGIIHTAVMEHGPETAKKFFNAAQRVVNY 590

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WLL  G                                               SIGIGDT
Sbjct: 591 WLLHRGF----------------------------------------------SIGIGDT 604

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD ++  +I   I++AK  V E+I  A    LE  PG T+RQ+FE +VN  LN+ARDK 
Sbjct: 605 IADARSMTDINNTIQQAKTQVSEIIAMAQQGRLEAQPGMTIRQSFEAKVNHELNNARDKA 664

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G +A+ SL  +NN+K MVVAGSKGS INISQ+ ACVGQQNVEG+RIP+GF+ RTLPHF+K
Sbjct: 665 GKAAQDSLPSFNNVKQMVVAGSKGSYINISQMTACVGQQNVEGRRIPYGFQYRTLPHFVK 724

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DD+ PE+RGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E VM
Sbjct: 725 DDHSPEARGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVM 784

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGL 457
           V YD TVRN+ G ++Q  YGEDG+
Sbjct: 785 VKYDGTVRNAQGDVVQFCYGEDGM 808



 Score =  147 bits (372), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 80/101 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEG+RIP+GF+ RTLPHF+KDD+ PE+RGFVENSYL GLTP EFFFHAM
Sbjct: 694  SQMTACVGQQNVEGRRIPYGFQYRTLPHFVKDDHSPEARGFVENSYLRGLTPQEFFFHAM 753

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N 
Sbjct: 754  GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNA 794



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 36/55 (65%)

Query: 1494 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            + P+QI++PQ N PVMGIVQDTL  VRK TKRD FLD       + + PD   T+
Sbjct: 436  IVPKQIVSPQKNAPVMGIVQDTLCGVRKFTKRDTFLDMDIMMNLLMWVPDWDGTL 490



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 32/39 (82%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
           GYIQRRL+KA+E VMV YD TVRN+ G ++Q  YGEDG+
Sbjct: 770 GYIQRRLVKALEDVMVKYDGTVRNAQGDVVQFCYGEDGM 808



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 35/46 (76%)

Query: 35  LGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILM 80
           +G  P ++RP+WM++++LPVPP++VRP+V   G  R+++ + + LM
Sbjct: 153 MGFSPDYSRPEWMVISILPVPPMAVRPSVHQEGLGRSEDDLTHKLM 198


>gi|308808522|ref|XP_003081571.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
 gi|116060036|emb|CAL56095.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
          Length = 1673

 Score =  421 bits (1083), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/445 (50%), Positives = 286/445 (64%), Gaps = 62/445 (13%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++  MNI+M+L  WDGK+P+P ILKP+PLWTGKQVFS+++P  VN+ RT +   D +D  
Sbjct: 553 KDVFMNIIMWLEDWDGKIPKPAILKPQPLWTGKQVFSMMLP-KVNLLRTSAWARDADDVT 611

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
                S  DT V +E G LL G LCKK++G+  G L+H+ + E G           QT+V
Sbjct: 612 ----FSVDDTGVRIEQGELLTGTLCKKTMGSGGGGLIHVTWEEWGPIAARGLISQTQTLV 667

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL                                       H+       G ++GI 
Sbjct: 668 NYWLL---------------------------------------HH-------GFTVGIA 681

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD +T   I   I KAK DV EVI++A N +LE  PG T++Q+FE +VN+ILN ARD
Sbjct: 682 DTIADDETMFTINNTITKAKADVKEVIKQAQNNELELQPGMTMQQSFEQKVNQILNKARD 741

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G SA+ SL + NN+K MV AGSKGS +NISQ+IACVGQQNVEGKRIP+GF+ RTLPHF
Sbjct: 742 NAGNSAQNSLKDTNNVKMMVTAGSKGSFLNISQMIACVGQQNVEGKRIPYGFKGRTLPHF 801

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDD+GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME 
Sbjct: 802 SKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 861

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDP------ 485
           V+V YD TVRNSVG +IQ  YGEDG+    +E Q +DT+ L  K+F   ++ DP      
Sbjct: 862 VVVKYDGTVRNSVGDVIQFLYGEDGMDATMIESQVLDTLRLGAKEFAAVFQIDPDVSGFN 921

Query: 486 ----SNERPT-LRNVSSLRRVVNSK 505
               SNE+ + L + + +R +++++
Sbjct: 922 KGWLSNEQASDLAHSTKVREIIDAE 946



 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 225/519 (43%), Positives = 313/519 (60%), Gaps = 23/519 (4%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            VAG D LS +A  N TLLF   VR+ L  K V ++++L+   F+W++GE+E+RF+ A   
Sbjct: 1016 VAGTDPLSIEAQRNGTLLFFAHVRANLAAKRVLKDHKLTRAGFDWVIGEVESRFKMALAP 1075

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLP--HFIKDDYGPESRGFVENSYLAGL-----TPSEFFF 1065
               G   V  + I     + TL   HF        + G      +  +     TPS    
Sbjct: 1076 PGDGIGVVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKQIKTPS--LT 1133

Query: 1066 HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMP 1125
             A+        T  K  +       L  V A T ++YDPDP +TVI ED+EFV  YYEMP
Sbjct: 1134 VALKPEFASDRTKAKDVQASLEYTTLHSVAAVTEVHYDPDPTDTVIEEDREFVRAYYEMP 1193

Query: 1126 D--FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLR 1183
            D   DP+R+SPWLLRIEL+R+ M DKKL M  ++E+IN  FG DL+CIFNDDN+EKLVLR
Sbjct: 1194 DEDVDPSRMSPWLLRIELNREMMVDKKLLMADVAERINEDFGGDLSCIFNDDNSEKLVLR 1253

Query: 1184 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1243
            IRIM ++  K  D       +ED++FL+ IE  MLS++ L+GI  I KV++     ++K 
Sbjct: 1254 IRIMKAEGEKYDDS-----SIEDEVFLKRIETQMLSNLALRGIPDIKKVFIR----EAKS 1304

Query: 1244 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1303
              +   +  F+   +W+L+T+G +L++V++  DVD  RT SN + E+ Q+LGIEAVR ++
Sbjct: 1305 NAVNPRTQLFEKHTEWMLDTEGVNLLEVMAHPDVDFTRTTSNHLIEVIQILGIEAVRNTL 1364

Query: 1304 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1363
             +E+  V++F G YVNYRHLA+L +VMT +GHL++ITRHGINR +TGALMRCSFEETVD+
Sbjct: 1365 LRELRGVIEFDGSYVNYRHLAILVEVMTYRGHLVSITRHGINRAETGALMRCSFEETVDI 1424

Query: 1364 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL-ATGMMGGPA 1422
            LM+AAA +E D M G SENI++GQ   +GTG F L LD E   D +E+ L  T    G  
Sbjct: 1425 LMEAAAFSERDNMTGPSENIMLGQFCPIGTGEFKLHLDQEMLLDAVELDLFETARTPGHY 1484

Query: 1423 G-MFFGSAATPSSIPGPPAWYPIHIAISLLSRFTTVICI 1460
            G M  G   TP      P++  +    +++S F T +  
Sbjct: 1485 GSMTPGREGTPGYGAKSPSFL-LSPGGAMMSPFDTSMAF 1522



 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 88/179 (49%), Positives = 117/179 (65%), Gaps = 14/179 (7%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +I+ + +VR ++ +E+  V++F G YVNYRHLA+L +VMT +GHL++ITRHGINR +T
Sbjct: 1351 VIQILGIEAVRNTLLRELRGVIEFDGSYVNYRHLAILVEVMTYRGHLVSITRHGINRAET 1410

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            GALMRCSFEETVD+LM+AAA +E D M G SENI++GQ   +GTG F L LD E   D +
Sbjct: 1411 GALMRCSFEETVDILMEAAAFSERDNMTGPSENIMLGQFCPIGTGEFKLHLDQEMLLDAV 1470

Query: 893  EIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSP 951
            E+ L            F +A TP      MTP  + TP Y A  SP   ++PGG   SP
Sbjct: 1471 ELDL------------FETARTPGHYG-SMTPGREGTPGYGA-KSPSFLLSPGGAMMSP 1515



 Score =  155 bits (391), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 83/102 (81%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+IACVGQQNVEGKRIP+GF+ RTLPHF KDD+GPESRGFVENSYL GLTP EFFFHAM
Sbjct: 773  SQMIACVGQQNVEGKRIPYGFKGRTLPHFSKDDFGPESRGFVENSYLRGLTPQEFFFHAM 832

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N+V
Sbjct: 833  GGREGLIDTAVKTSETGYIQRRLVKAMEDVVVKYDGTVRNSV 874



 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 93/154 (60%), Gaps = 35/154 (22%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTD 1586
            L  V A T ++YDPDP +TVI ED+EFV  YYEMPD   DP+R+SPWLLRIEL+R+ M D
Sbjct: 1159 LHSVAAVTEVHYDPDPTDTVIEEDREFVRAYYEMPDEDVDPSRMSPWLLRIELNREMMVD 1218

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL M  ++                            E+IN  FG DL+CIFNDDN+EKL
Sbjct: 1219 KKLLMADVA----------------------------ERINEDFGGDLSCIFNDDNSEKL 1250

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            VLRIRIM ++  K  D       +ED++FL+ IE
Sbjct: 1251 VLRIRIMKAEGEKYDDS-----SIEDEVFLKRIE 1279



 Score =  111 bits (278), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 63/74 (85%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            +E+  V++F G YVNYRHLA+L +VMT +GHL++ITRHGINR +TGALMRCSFEETVD+L
Sbjct: 1366 RELRGVIEFDGSYVNYRHLAILVEVMTYRGHLVSITRHGINRAETGALMRCSFEETVDIL 1425

Query: 579  MDAAAHAEADPMRG 592
            M+AAA +E D M G
Sbjct: 1426 MEAAAFSERDNMTG 1439



 Score =  101 bits (252), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 108/223 (48%), Gaps = 51/223 (22%)

Query: 592  GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
            GYIQRRL+KAME V+V YD TVRNSVG +IQ  YGEDG+    +E Q +DT+ L  K+F 
Sbjct: 849  GYIQRRLVKAMEDVVVKYDGTVRNSVGDVIQFLYGEDGMDATMIESQVLDTLRLGAKEFA 908

Query: 652  DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
              ++ DP         FN+  L                     S +Q   + +   +RE+
Sbjct: 909  AVFQIDPDVSG-----FNKGWL---------------------SNEQASDLAHSTKVREI 942

Query: 712  MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR----WKLWGN 767
                     ++ EWE+L +DR  LR++F +G+ +V LP N+  +I+  Q+    ++  G+
Sbjct: 943  ---------IDAEWERLQKDRVELRKVFPTGDPHVHLPVNMKRIIWNAQKQYGMYRPGGS 993

Query: 768  EN-----------LRFLCKIIFVLSVRK-SVEKEMNTVLQFYG 798
            E               L K+I V      S+E + N  L F+ 
Sbjct: 994  EEELSVTHVIESVAELLPKLIVVAGTDPLSIEAQRNGTLLFFA 1036



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 31/43 (72%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            V+ + + P+ I++PQ N+PVM IVQDTL   R +TKRD F+ K
Sbjct: 511  VKELMMVPKMIVSPQANKPVMAIVQDTLLGCRLITKRDTFIPK 553


>gi|262303429|gb|ACY44307.1| RNA polymerase largest subunit [Amblyomma sp. 'Amb2']
          Length = 268

 Score =  421 bits (1083), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/298 (67%), Positives = 231/298 (77%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMM ILMFLPIWDGKMP P +LKPKPLWTGKQ+FSLIIPGNVN+ RTHSTHPD+ED G
Sbjct: 17  KDQMMTILMFLPIWDGKMPMPAVLKPKPLWTGKQIFSLIIPGNVNLIRTHSTHPDEEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++EHG L+ GI+CKK++G SSGSL+H+ F ELGHEV G FYG+IQTVV
Sbjct: 77  PYKWISPGDTKVLIEHGELISGIVCKKTVGASSGSLMHVVFAELGHEVAGAFYGHIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLLLEGH+IGIGDTIAD QT+++I+  I+KAK DVI+VI+KAHN +LEP+PG      
Sbjct: 137 NAWLLLEGHTIGIGDTIADKQTFIDIKNTIEKAKHDVIDVIEKAHNDELEPSPG------ 190

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 191 ----------------------------------------NTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 211 KTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLP 268



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 30/36 (83%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            G   ++   +QVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 233  GAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLP 268


>gi|50346883|gb|AAT75148.1| RNA polymerase 2 [Caenorhabditis sp. SB341]
          Length = 622

 Score =  421 bits (1083), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/415 (53%), Positives = 289/415 (69%), Gaps = 52/415 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V+G D +SKQA  NATLL   L+RSTLC+K +A + +L++EAF+WL+GE+E+RF Q+   
Sbjct: 232  VSGSDDISKQAQYNATLLMNILLRSTLCSKKMATSAKLNTEAFDWLLGEVESRFMQSIAQ 291

Query: 1010 --QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
              +++  +  Q++ G+                    P ++  +   + AG++        
Sbjct: 292  PGEMVGALAAQSL-GE--------------------PATQMTLNTFHYAGVSAKNVTLGV 330

Query: 1068 MGGREGLIDTAVKTAETVNVLVFL-----------------------FQVTANTAIYYDP 1104
               +E  I    K  +T ++ VFL                        +VT+NTAIYYDP
Sbjct: 331  PRLKE--IINVSKQLKTPSLTVFLQGAAAKDAEKAKDVLCKLEHTTLKKVTSNTAIYYDP 388

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
            DP+NTVI ED+E+V+++YEMPDFDP++ SPW+LRIELDRKRMTDKKL+ME I++KI++GF
Sbjct: 389  DPKNTVIGEDEEWVSIFYEMPDFDPSKASPWMLRIELDRKRMTDKKLSMEHIADKIHSGF 448

Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
            G+DL+ I+NDDNA+ LV R+RI   DD     +E+ VDKMEDD FLRCIEANMLSD++LQ
Sbjct: 449  GNDLHVIYNDDNADHLVFRLRIA-GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQ 507

Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
            GI AI K YM+ P TD KKRIIIT  G FKAI +W+LETDGT+L++VLSER +DPVRT S
Sbjct: 508  GIPAILKGYMYKPTTDDKKRIIITPEGGFKAIPEWILETDGTALLRVLSERHIDPVRTSS 567

Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1339
            NDICEIF+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMA 
Sbjct: 568  NDICEIFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAF 622



 Score =  229 bits (583), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 108/137 (78%), Positives = 121/137 (88%)

Query: 353 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 412
           NVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 1   NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTA 60

Query: 413 VKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVAL 472
           VKTAETGYIQRRLIKAMESVMV+YD TVRNS+ Q+IQLRYGEDGL G  VE+Q + T+  
Sbjct: 61  VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQSMPTMKP 120

Query: 473 SHKKFEDKYRFDPSNER 489
           ++  FE  +R D ++ER
Sbjct: 121 TNAVFEKDFRLDLADER 137



 Score =  172 bits (436), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 85/152 (55%), Positives = 107/152 (70%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT+NTAIYYDPDP+NTVI ED+E+V+++YEMPDFDP++ SPW+LRIELDRKRMTDKK
Sbjct: 375  LKKVTSNTAIYYDPDPKNTVIGEDEEWVSIFYEMPDFDPSKASPWMLRIELDRKRMTDKK 434

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            L+ME I++KI++G                            FG+DL+ I+NDDNA+ LV 
Sbjct: 435  LSMEHIADKIHSG----------------------------FGNDLHVIYNDDNADHLVF 466

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   DD     +E+ VDKMEDD FLRCIE
Sbjct: 467  RLRIA-GDDKSSDAQEEQVDKMEDDXFLRCIE 497



 Score =  145 bits (366), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 76/92 (82%)

Query: 1019 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 1078
            NVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 1    NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTA 60

Query: 1079 VKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            VKTAET  +   L +   +  + YD   +N++
Sbjct: 61   VKTAETGYIQRRLIKAMESVMVNYDGTVRNSL 92



 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 99/170 (58%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAMESVMV+YD TVRNS+ Q+IQLRYGEDGL G  VE+Q + T+  ++  FE
Sbjct: 67  GYIQRRLIKAMESVMVNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQSMPTMKPTNAVFE 126

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R D ++ER L+  + E V+R+L  + D I ++E                        
Sbjct: 127 KDFRLDLADERTLKSCYEEHVVRQLKEAPDAIEKVE------------------------ 162

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                       EW +L EDR  LR+IF +G++ VVLPCNL  +I+  Q+
Sbjct: 163 -----------AEWNQLEEDRRLLRKIFPTGDAKVVLPCNLQRLIWNAQK 201



 Score = 74.7 bits (182), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 43/53 (81%), Gaps = 3/53 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 822
           +C+I  VL   +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMA 
Sbjct: 570 ICEIFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAF 622



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 33/38 (86%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 553
           ++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMA 
Sbjct: 585 AIEREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAF 622


>gi|430812931|emb|CCJ29676.1| unnamed protein product [Pneumocystis jirovecii]
          Length = 1762

 Score =  421 bits (1082), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/422 (51%), Positives = 278/422 (65%), Gaps = 55/422 (13%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           +++Q+MNIL+++P WDG MP P I+KPK +WTGKQ+ S++IP  +N  R      DDE  
Sbjct: 546 SKDQVMNILLWVPEWDGNMPPPAIIKPKAMWTGKQILSMVIPKGINFIR------DDEKQ 599

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
            P   ++P DT +++E+G ++ GI+ KK++G S G L+H    E G EVC  F+  IQ V
Sbjct: 600 TP---MTPDDTGMMLENGEIIYGIVDKKTVGASQGGLVHTIMREKGPEVCRVFFNGIQMV 656

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN WLL                                       HN       G SIGI
Sbjct: 657 VNYWLL---------------------------------------HN-------GFSIGI 670

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIAD  T  +I   I +AK  V E+I  A    L+  PG TLR++FE++V+R LN AR
Sbjct: 671 GDTIADANTMRDITNTIAEAKAKVQEIILDAQQNRLQVEPGMTLRESFESKVSRALNQAR 730

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           D  G SA+ SL + NN+K MV AGSKGS INISQ+ ACVGQQ VEGKRIP+GF+ RTLPH
Sbjct: 731 DTAGRSAQMSLKDSNNVKQMVTAGSKGSFINISQMSACVGQQIVEGKRIPYGFKYRTLPH 790

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F KDDY PES GF+ENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E
Sbjct: 791 FTKDDYSPESGGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALE 850

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
            VMV YD TVRNS+G +IQL YGEDGL G +VE+Q +D++ LS+++F+ +YR D  + + 
Sbjct: 851 DVMVKYDGTVRNSLGDIIQLVYGEDGLDGVSVEYQNLDSLRLSNEEFDRRYRVDVMDPKK 910

Query: 491 TL 492
           T+
Sbjct: 911 TI 912



 Score =  349 bits (895), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 198/483 (40%), Positives = 292/483 (60%), Gaps = 62/483 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRF-----Q 1007
            V G D+ ++++ ENATLLFQ L+RS L ++ V E YRL+  AFEW++GEIE RF      
Sbjct: 1005 VRGNDKFTRESQENATLLFQILLRSRLASRRVIEEYRLNKVAFEWVLGEIETRFIHSVAN 1064

Query: 1008 QAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
              +++  +  Q++ G+                    P ++  +   + AG++        
Sbjct: 1065 PGEMVGTLAAQSI-GE--------------------PATQMTLNTFHYAGVSSKSITLGV 1103

Query: 1068 MGGREGLIDTAVKTAETVNVLVFLF-----------------------QVTANTAIYYDP 1104
               +E  I    KT +T ++ ++L                         VT+ T I+YDP
Sbjct: 1104 PRLKE--ILNVAKTIKTPSLTIYLTPEVSKDMESAKQVQTAIEHTTLKTVTSVTEIFYDP 1161

Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPT----RISPWLLRIELDRKRMTDKKLTMEAISEKI 1160
            DPQ TVI ED+ FV  ++ +PD D      R S WLLR+ELDR +M DKKL+M  ++ KI
Sbjct: 1162 DPQQTVIEEDRTFVEAFFAIPDEDVEANLHRQSSWLLRLELDRAKMLDKKLSMSDVAAKI 1221

Query: 1161 NAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSD 1220
               F  DL  I+++DNA+KLV+R R++  ++    D++D   + +  + L+ IE++ML  
Sbjct: 1222 TESFHKDLFVIWSEDNADKLVIRCRVIKDEEKSFDDDDDDPIEED--VLLKRIESHMLES 1279

Query: 1221 MTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPV 1280
            ++L+G+  I +V+M        K +  +E+GEF    +W+LETDG +L +V++  +VDP 
Sbjct: 1280 ISLRGVPNISRVFMM-----EHKTVYQSENGEFVRGEEWVLETDGINLAEVMAVENVDPR 1334

Query: 1281 RTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAIT 1340
            RT+SN   EI QVLGIEA R ++ KE+  V++F G YVNYRHL+LL D MT++GHLMAIT
Sbjct: 1335 RTYSNSFVEILQVLGIEATRAALLKELRNVIEFDGSYVNYRHLSLLADTMTSRGHLMAIT 1394

Query: 1341 RHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1400
            RHGINR +TG LMRCSFEETV++LM+AAA  E D  RG+SENI++GQL  +GTG FD++L
Sbjct: 1395 RHGINRAETGVLMRCSFEETVEILMEAAAAGEMDDCRGISENIMLGQLAPLGTGEFDVIL 1454

Query: 1401 DAE 1403
            D +
Sbjct: 1455 DED 1457



 Score =  151 bits (382), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/207 (42%), Positives = 127/207 (61%), Gaps = 16/207 (7%)

Query: 751  NLMEVIFI--LQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLAL 808
            NL EV+ +  +   + + N  +  L +++ + + R ++ KE+  V++F G YVNYRHL+L
Sbjct: 1321 NLAEVMAVENVDPRRTYSNSFVEIL-QVLGIEATRAALLKELRNVIEFDGSYVNYRHLSL 1379

Query: 809  LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 868
            L D MT++GHLMAITRHGINR +TG LMRCSFEETV++LM+AAA  E D  RG+SENI++
Sbjct: 1380 LADTMTSRGHLMAITRHGINRAETGVLMRCSFEETVEILMEAAAAGEMDDCRGISENIML 1439

Query: 869  GQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGM-----FFGSAATP----SSMS 919
            GQL  +GTG FD++LD +      E+ +   M  G +        +   ATP    S MS
Sbjct: 1440 GQLAPLGTGEFDVILDEDMLN---EVVVDRQMFRGASAALGKTPLYDDQATPYDSRSPMS 1496

Query: 920  PQMTPWAQSTPAYNALMSPGAAMTPGG 946
                  +    A++ L+  G+  TPGG
Sbjct: 1497 DSGYVGSSDGAAFSPLVQSGSE-TPGG 1522



 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 78/102 (76%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIP+GF+ RTLPHF KDDY PES GF+ENSYL GLTP EFFFHAM
Sbjct: 763  SQMSACVGQQIVEGKRIPYGFKYRTLPHFTKDDYSPESGGFIENSYLRGLTPQEFFFHAM 822

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 823  AGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSL 864



 Score =  114 bits (285), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 51/74 (68%), Positives = 61/74 (82%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            KE+  V++F G YVNYRHL+LL D MT++GHLMAITRHGINR +TG LMRCSFEETV++L
Sbjct: 1359 KELRNVIEFDGSYVNYRHLSLLADTMTSRGHLMAITRHGINRAETGVLMRCSFEETVEIL 1418

Query: 579  MDAAAHAEADPMRG 592
            M+AAA  E D  RG
Sbjct: 1419 MEAAAAGEMDDCRG 1432



 Score =  104 bits (260), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 90/166 (54%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD TVRNS+G +IQL YGEDGL G +VE+Q +D++ LS+++F+
Sbjct: 839 GYIQRRLVKALEDVMVKYDGTVRNSLGDIIQLVYGEDGLDGVSVEYQNLDSLRLSNEEFD 898

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YR D                  +M     I  L  E  +                 E+
Sbjct: 899 RRYRVD------------------VMDPKKTIFPLYLEAGN-----------------EI 923

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVI 756
            G   + + L++E+ +LCEDRE LR  IF  G+    LP N+  +I
Sbjct: 924 EGDMAIQNLLDQEYNQLCEDRELLRNFIFKDGDGRRPLPVNIQRII 969



 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 69/129 (53%), Gaps = 32/129 (24%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPT----RISPWLLRIELDRKRM 1584
            L  VT+ T I+YDPDPQ TVI ED+ FV  ++ +PD D      R S WLLR+ELDR +M
Sbjct: 1148 LKTVTSVTEIFYDPDPQQTVIEEDRTFVEAFFAIPDEDVEANLHRQSSWLLRLELDRAKM 1207

Query: 1585 TDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAE 1644
             DKKL+                            M  ++ KI   F  DL  I+++DNA+
Sbjct: 1208 LDKKLS----------------------------MSDVAAKITESFHKDLFVIWSEDNAD 1239

Query: 1645 KLVLRIRIM 1653
            KLV+R R++
Sbjct: 1240 KLVIRCRVI 1248



 Score = 67.4 bits (163), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 24/129 (18%)

Query: 1492 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPE 1551
            I + P+QI++PQ+N+PVMGIVQDTL  V+K+T+RD FL K                    
Sbjct: 508  ICMVPKQIVSPQSNKPVMGIVQDTLAGVKKLTRRDNFLSK-------------------- 547

Query: 1552 DQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLS 1611
              + +N+   +P++D     P +++    +   T K++    I + IN    D+  TP++
Sbjct: 548  -DQVMNILLWVPEWDGNMPPPAIIK---PKAMWTGKQILSMVIPKGINFIRDDEKQTPMT 603

Query: 1612 PTDKKLTME 1620
            P D  + +E
Sbjct: 604  PDDTGMMLE 612


>gi|262303427|gb|ACY44306.1| RNA polymerase largest subunit [Ammothea hilgendorfi]
          Length = 654

 Score =  421 bits (1082), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/298 (67%), Positives = 229/298 (76%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++QMM +LMFLPIWDG+MPQP ILKPKPLWTGKQ+F+LIIP NVN  RTHSTHPDDED  
Sbjct: 17  RDQMMTLLMFLPIWDGRMPQPAILKPKPLWTGKQLFTLIIPCNVNCIRTHSTHPDDEDDS 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISPGDTKV++EHG LL GI+CK+++G S GSL+HI  LELGH+V G+FYG+IQTVV
Sbjct: 77  PYKWISPGDTKVLIEHGELLSGIICKRTVGPSGGSLMHIVMLELGHDVAGKFYGHIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGHSIGIGDTIAD QTY +I+  I+KAK DVIEVI+KAHN +LEPTPG      
Sbjct: 137 NNWLLLEGHSIGIGDTIADHQTYQDIRNTIRKAKNDVIEVIEKAHNDELEPTPG------ 190

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 191 ----------------------------------------NTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 211 KTGSSAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLP 268



 Score =  248 bits (633), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/227 (60%), Positives = 154/227 (67%), Gaps = 32/227 (14%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V GED+LS QANENATLLFQ ++RSTLCTK VAE +RLS+EAF+WL+GE++ RFQQAQ  
Sbjct: 454  VPGEDRLSLQANENATLLFQAMLRSTLCTKKVAEEFRLSTEAFDWLLGEVDARFQQAQAS 513

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
               G   V  K +  G  +  L   I     P+             TPS   F       
Sbjct: 514  PXAG---VSAKNVTLGVPR--LKEIINVSKKPK-------------TPSLTVF------- 548

Query: 1073 GLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD 1126
             L   A + AE   +VL       L +VTANTAIYYDPDPQNTVI EDQEFVNVYYEMPD
Sbjct: 549  -LTGAAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPD 607

Query: 1127 FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFN 1173
            FDPTRISPWLLRIELDRKRMTDKKLTME I+EKINAGFGDDLNCIFN
Sbjct: 608  FDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFN 654



 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/79 (94%), Positives = 76/79 (96%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 572  LRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 631

Query: 1589 LTMEAISEKINAGFGDDLN 1607
            LTME I+EKINAGFGDDLN
Sbjct: 632  LTMEQIAEKINAGFGDDLN 650



 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/158 (47%), Positives = 94/158 (59%), Gaps = 35/158 (22%)

Query: 604 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERQ 663
           SVMV YD T+RNSV QLIQLRYGEDGL G  VE Q + T+  S K F+ K++FDPSNER 
Sbjct: 307 SVMVSYDGTIRNSVQQLIQLRYGEDGLDGTMVESQNLPTIKPSDKAFQKKFKFDPSNERY 366

Query: 664 LRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEK 723
           LRR+FNE+V++EL+ SG  + ELEKE                                  
Sbjct: 367 LRRVFNEEVVKELISSGSALGELEKE---------------------------------- 392

Query: 724 EWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
            WE+L  DRE+LR IF +G++ VVLPCNL   IF + +
Sbjct: 393 -WERLKRDRESLRSIFPTGDNKVVLPCNLNRXIFHINK 429



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 58/93 (62%), Gaps = 10/93 (10%)

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           SVMV YD T+RNSV QLIQLRYGEDGL G  VE Q + T+  S K F+ K++FDPSNER 
Sbjct: 307 SVMVSYDGTIRNSVQQLIQLRYGEDGLDGTMVESQNLPTIKPSDKAFQKKFKFDPSNER- 365

Query: 491 TLRNVSSLRRVVNS---KPLLIGCWKLTSVEKE 520
                  LRRV N    K L+     L  +EKE
Sbjct: 366 ------YLRRVFNEEVVKELISSGSALGELEKE 392



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 27/27 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            +QVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 242  SQVIACVGQQNVEGKRIPFGFRKRTLP 268


>gi|397135977|gb|AFO11483.1| RNA polymerase I, partial [Schizosaccharomyces pombe]
          Length = 868

 Score =  421 bits (1082), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/415 (53%), Positives = 271/415 (65%), Gaps = 55/415 (13%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           +MNI++++P WDG +P P ILKPK LWTGKQ+ SLIIP  +N+ R      DD+ S    
Sbjct: 359 VMNIMLWVPDWDGILPPPVILKPKVLWTGKQILSLIIPKGINLIRD-----DDKQS---- 409

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
             +P D+ +++E+G ++ G++ KK++G S G L+H  + E G E+C  F+  IQ VVN W
Sbjct: 410 LSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNYW 469

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL                                       HN       G SIGIGDTI
Sbjct: 470 LL---------------------------------------HN-------GFSIGIGDTI 483

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD  T  E+   +K+A+  V E IQ A +  L+P PG TLR++FE +V+RILN ARD  G
Sbjct: 484 ADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAKVSRILNQARDNAG 543

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+ SL + NN+K MV AGSKGS INISQ+ ACVGQQ VEGKRIPFGF+ RTLPHF KD
Sbjct: 544 RSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPHFPKD 603

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D  PESRGF+ENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KAME VMV
Sbjct: 604 DDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMV 663

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
            YD TVRN++G +IQ  YGEDGL    VE+Q  D++ LS K+FE KYR D   +R
Sbjct: 664 RYDGTVRNAMGDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFEKKYRIDLMEDR 718



 Score =  141 bits (355), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 77/102 (75%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF+ RTLPHF KDD  PESRGF+ENSYL GLTP EFFFHAM
Sbjct: 572  SQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAM 631

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  + YD   +N +
Sbjct: 632  AGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAM 673



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 87/166 (52%), Gaps = 40/166 (24%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME VMV YD TVRN++G +IQ  YGEDGL    VE+Q  D++ LS K+FE
Sbjct: 648 GYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFE 707

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KYR D   +R L  ++ E+                              I N+  +++L
Sbjct: 708 KKYRIDLMEDRSL-SLYMEN-----------------------------SIENDSSVQDL 737

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVI 756
                    L++E+ +L  DRE L + IF  G++   LP N+  +I
Sbjct: 738 ---------LDEEYTQLVADRELLCKFIFPKGDARWPLPVNVQRII 774



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 39/57 (68%)

Query: 955  GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            G D++++    NATLLFQ L+RS    K V   YRL+  AFEW++GE+E RFQQA V
Sbjct: 812  GSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVV 868



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 24/132 (18%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            ++ I + P+QI++PQ+N+PVMGIVQDTL  VRK + RD FL +              N V
Sbjct: 314  IQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTR--------------NAV 359

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNT 1608
            +       N+   +PD+D     P +L+ ++     T K++    I + IN    DD  +
Sbjct: 360  M-------NIMLWVPDWDGILPPPVILKPKV---LWTGKQILSLIIPKGINLIRDDDKQS 409

Query: 1609 PLSPTDKKLTME 1620
              +PTD  + +E
Sbjct: 410  LSNPTDSGMLIE 421


>gi|397135856|gb|AFO11423.1| RNA polymerase I, partial [Saturnispora dispora]
          Length = 870

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/422 (50%), Positives = 273/422 (64%), Gaps = 57/422 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MN+  ++P WDG +P PCILKPKPLW+GKQ+ SL IP  + + R   +         
Sbjct: 357 DQVMNMCYWIPEWDGVIPPPCILKPKPLWSGKQMMSLCIPKGIFLQRLDGS--------- 407

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              +SP D+ +++ +G ++ G++ K ++G+S+G L+H    E G  +C R +GNIQ V+N
Sbjct: 408 --LLSPKDSGMLIMNGEIMFGVVNKATVGSSAGGLIHTTMREKGPTICARMFGNIQKVIN 465

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 466 YWLL---------------------------------------HN-------GFSIGIGD 479

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
            IADP+T   I   IK+AKE V  VI+ A    LEP PG T+R++FE +V++ILN+ARD 
Sbjct: 480 AIADPETMKTITETIKEAKEKVQLVIKDAQQNLLEPEPGMTVRESFEQKVSKILNEARDS 539

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ SL   NN+K MV AGSKGS INISQ+ ACVGQQ VEGKRI FGF  R+LPHF 
Sbjct: 540 AGKSAETSLKNSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLPHFT 599

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY  ES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 600 KDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDI 659

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MVHYD T RNS+G +IQ  YGEDGL G +VE Q +DT+  S ++FE KYR D  NE+ ++
Sbjct: 660 MVHYDGTTRNSLGDIIQFLYGEDGLDGTSVEKQTVDTIPGSTEQFEKKYRVDLMNEKKSI 719

Query: 493 RN 494
           R+
Sbjct: 720 RS 721



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 77/102 (75%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRI FGF  R+LPHF KDDY  ES+GFVENSYL GLTP EFFFHAM
Sbjct: 570  SQMSACVGQQIVEGKRINFGFADRSLPHFTKDDYSAESKGFVENSYLRGLTPQEFFFHAM 629

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 630  AGREGLIDTAVKTAETGYIQRRLLKALEDIMVHYDGTTRNSL 671



 Score =  109 bits (272), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 94/166 (56%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G +IQ  YGEDGL G +VE Q +DT+  S ++FE
Sbjct: 646 GYIQRRLLKALEDIMVHYDGTTRNSLGDIIQFLYGEDGLDGTSVEKQTVDTIPGSTEQFE 705

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KYR D  NE++                      +  +++++ S              E+
Sbjct: 706 KKYRVDLMNEKK---------------------SIRSDLIEYGS--------------EI 730

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVI 756
           +G  ++   L++E+E+L  DRE LR  +F +G++N  LP N+  +I
Sbjct: 731 LGDIELQKVLDEEYEQLLTDREFLRTVVFPNGDNNWPLPVNIRRII 776



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 41/59 (69%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+  +  +A ENAT LFQCLVRS L T+ V E YRL+  AF+W++G IE +F ++ V
Sbjct: 812  VRGKGSIISEAQENATNLFQCLVRSRLATRRVLEEYRLNKNAFDWVIGTIEQQFARSLV 870



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 38/62 (61%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   P QI++PQ+N+PVMGIVQDTL  VRKMT RD F++        Y+ P+    +
Sbjct: 314  LSQIAAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMCYWIPEWDGVI 373

Query: 1549 IP 1550
             P
Sbjct: 374  PP 375


>gi|254571371|ref|XP_002492795.1| RNA polymerase II largest subunit B220 [Komagataella pastoris
           GS115]
 gi|238032593|emb|CAY70616.1| RNA polymerase II largest subunit B220 [Komagataella pastoris
           GS115]
 gi|328353197|emb|CCA39595.1| DNA-directed RNA polymerase II subunit A [Komagataella pastoris CBS
           7435]
          Length = 1743

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/421 (51%), Positives = 269/421 (63%), Gaps = 55/421 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           EQ+MN+L ++P WDG +PQP ILKPKPLWTGKQ+ S+ IP  +++ RT          G 
Sbjct: 545 EQVMNMLFWVPSWDGVVPQPAILKPKPLWTGKQLLSIAIPSGIHLQRT---------DGG 595

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              +SP D  +++  G ++ G++ KK++G+  G L+H    E G ++C   +GNIQ VVN
Sbjct: 596 NSLLSPKDNGMLIVDGKVMFGVVDKKTVGSGGGGLIHTVMREKGPKICAELFGNIQKVVN 655

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 656 YWLL---------------------------------------HN-------GFSIGIGD 669

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
            IAD  T  EI  AI  AKE V E+I KA + +LE  PG TLR++FE +V+R LNDARD 
Sbjct: 670 AIADASTMKEITHAISSAKEQVQEIIYKAQHNELELKPGMTLRESFEGEVSRTLNDARDS 729

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ +L + NN+K MV AGSKGS INI+Q+ ACVGQQ VEGKRI FGF  R+LPHF 
Sbjct: 730 AGRSAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQMVEGKRIAFGFADRSLPHFT 789

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDD+ PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 790 KDDFSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 849

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MVHYD T RNS+G +IQ  YGEDGL G  VE Q IDT+  S K F  +Y  D  +E+ ++
Sbjct: 850 MVHYDGTTRNSLGDIIQFLYGEDGLDGTQVERQTIDTIPGSDKAFHKRYYVDLMDEKNSI 909

Query: 493 R 493
           +
Sbjct: 910 K 910



 Score =  358 bits (919), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 217/510 (42%), Positives = 302/510 (59%), Gaps = 63/510 (12%)

Query: 955  GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA----- 1009
            GE++L K+A +NAT LFQCLVR+ L T+ + E +RL+ +AFEW++G IE +FQ++     
Sbjct: 1004 GENELIKEAQQNATSLFQCLVRARLATRRILEEFRLNRDAFEWVLGTIEAQFQRSLVHPG 1063

Query: 1010 QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGFVE 1051
            +++  +  Q+                 V  K +  G  R + + +  K+   P    +++
Sbjct: 1064 EMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLD 1123

Query: 1052 NSYLAGLTPSEFFFHAMGGREGLIDT-AVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
                               RE  +D    K  ++      L  VT+ T IYYDPDP +TV
Sbjct: 1124 -------------------REIALDIEKAKVIQSSIEYTTLKNVTSATEIYYDPDPTSTV 1164

Query: 1111 IPEDQEFVNVYYEMPD--FDPT--RISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGD 1166
            I ED + V  Y+ +PD   + T  + SPWLLR+ELDR RM DK+LTM  +++KI+  F D
Sbjct: 1165 IEEDFDTVEAYFSIPDEKVEETIDKQSPWLLRLELDRARMLDKQLTMNQVADKISEVFSD 1224

Query: 1167 DLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGI 1226
            DL  ++++DNA+KL++R R++   D K  DEE    + E+D  L+ IEA+ML  + L+GI
Sbjct: 1225 DLFVMWSEDNADKLIIRCRVIR--DPKAMDEEL---EAEEDQMLKRIEAHMLDLIALRGI 1279

Query: 1227 EAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSND 1286
              I KVYM        K  +  ESGE+K    W LETDG +L +V++   VD  RT+SN 
Sbjct: 1280 PGISKVYMV-----KHKVSVPDESGEYKNEELWALETDGINLAEVMAVPGVDSSRTYSNS 1334

Query: 1287 ICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1346
              EI  VLGIEA R S+ KE+  V+ F G YVNYRH+ALL DVMT++G+LMAITRHGINR
Sbjct: 1335 FVEILSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMALLVDVMTSRGYLMAITRHGINR 1394

Query: 1347 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1406
             DTGALMRCSFEETV++L +A A AE D  RGVSEN+++GQL  MGTG FD+++D EK  
Sbjct: 1395 ADTGALMRCSFEETVEILFEAGAAAELDDCRGVSENVMLGQLAPMGTGAFDVMID-EKLL 1453

Query: 1407 DGIEIPLATGMMGGPAGMFFGSAATPSSIP 1436
              +    A  M      +F G A   S+ P
Sbjct: 1454 TSLPADYAPTM-----PLFKGKATQGSATP 1478



 Score =  154 bits (390), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/238 (40%), Positives = 133/238 (55%), Gaps = 40/238 (16%)

Query: 751  NLMEVIFI--LQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLAL 808
            NL EV+ +  +   + + N  +  L  ++ + + R S+ KE+  V+ F G YVNYRH+AL
Sbjct: 1315 NLAEVMAVPGVDSSRTYSNSFVEILS-VLGIEATRSSLYKEILNVIAFDGSYVNYRHMAL 1373

Query: 809  LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 868
            L DVMT++G+LMAITRHGINR DTGALMRCSFEETV++L +A A AE D  RGVSEN+++
Sbjct: 1374 LVDVMTSRGYLMAITRHGINRADTGALMRCSFEETVEILFEAGAAAELDDCRGVSENVML 1433

Query: 869  GQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGMFFGSA----ATPSSMSPQ--- 921
            GQL  MGTG FD+++D EK    +    A  M      +F G A    ATP   + Q   
Sbjct: 1434 GQLAPMGTGAFDVMID-EKLLTSLPADYAPTM-----PLFKGKATQGSATPYDNNAQYDD 1487

Query: 922  -----------MTPWAQSTPA---------YNALMSPGAAMTPG----GPGFSPSVAG 955
                        +P A++            Y  + SP    +PG     PGF+P+  G
Sbjct: 1488 EFNHDDVADVMFSPMAETGSGDDRSGGLTEYAGIQSPYQPTSPGLSATSPGFAPTSPG 1545



 Score =  140 bits (354), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 78/102 (76%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            AQ+ ACVGQQ VEGKRI FGF  R+LPHF KDD+ PES+GFVENSYL GLTP EFFFHAM
Sbjct: 760  AQMSACVGQQMVEGKRIAFGFADRSLPHFTKDDFSPESKGFVENSYLRGLTPQEFFFHAM 819

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 820  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 861



 Score =  114 bits (284), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 53/78 (67%), Positives = 64/78 (82%)

Query: 515  TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
            +S+ KE+  V+ F G YVNYRH+ALL DVMT++G+LMAITRHGINR DTGALMRCSFEET
Sbjct: 1349 SSLYKEILNVIAFDGSYVNYRHMALLVDVMTSRGYLMAITRHGINRADTGALMRCSFEET 1408

Query: 575  VDVLMDAAAHAEADPMRG 592
            V++L +A A AE D  RG
Sbjct: 1409 VEILFEAGAAAELDDCRG 1426



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 106/211 (50%), Gaps = 48/211 (22%)

Query: 592  GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
            GYIQRRL+KA+E +MVHYD T RNS+G +IQ  YGEDGL G  VE Q IDT+  S K F 
Sbjct: 836  GYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFLYGEDGLDGTQVERQTIDTIPGSDKAFH 895

Query: 652  DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +Y  D  +E+                     + ++ +++++ +              ++
Sbjct: 896  KRYYVDLMDEK---------------------NSIKPDVIEYAA--------------DI 920

Query: 712  MGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEV------IFILQRWKL 764
            +G  ++  EL  E+E+L  DR+ LREI F +G+ N  LP NL  +      IF L R K 
Sbjct: 921  LGDVELQKELNSEYEQLVSDRKFLREIVFVNGDHNWPLPVNLRRIIQNAQQIFHLDRAKA 980

Query: 765  WG------NENLRFLCKIIFVLSVRKSVEKE 789
                       +R LCK +FVL     + KE
Sbjct: 981  SDLTIPEIIHGVRDLCKKLFVLRGENELIKE 1011



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 37/156 (23%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPT--RISPWLLRIELDRKRM 1584
            L  VT+ T IYYDPDP +TVI ED + V  Y+ +PD   + T  + SPWLLR+ELDR RM
Sbjct: 1145 LKNVTSATEIYYDPDPTSTVIEEDFDTVEAYFSIPDEKVEETIDKQSPWLLRLELDRARM 1204

Query: 1585 TDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAE 1644
             DK+LTM  +++K                            I+  F DDL  ++++DNA+
Sbjct: 1205 LDKQLTMNQVADK----------------------------ISEVFSDDLFVMWSEDNAD 1236

Query: 1645 KLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            KL++R R++   D K  DEE    + E+D  L+ IE
Sbjct: 1237 KLIIRCRVIR--DPKAMDEE---LEAEEDQMLKRIE 1267



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 24/122 (19%)

Query: 1496 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPEDQEF 1555
            P QI++PQ+N+PVMGIVQDTL  VRKMT RD F+                     E ++ 
Sbjct: 509  PLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFI---------------------EYEQV 547

Query: 1556 VNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPTDK 1615
            +N+ + +P +D     P +L+    +   T K+L   AI   I+    D  N+ LSP D 
Sbjct: 548  MNMLFWVPSWDGVVPQPAILK---PKPLWTGKQLLSIAIPSGIHLQRTDGGNSLLSPKDN 604

Query: 1616 KL 1617
             +
Sbjct: 605  GM 606



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           E+   LG +  +ARP+WM++TVLPVPP  VRP++ M  + + Q+ + + L
Sbjct: 218 EDCFRLGFNEDYARPEWMIITVLPVPPPQVRPSIAMDETTQGQDDLTHKL 267


>gi|157841414|gb|ABV83165.1| RNA polymerase 2 [Choriorhabditis dudichi]
          Length = 380

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/400 (55%), Positives = 279/400 (69%), Gaps = 43/400 (10%)

Query: 963  ANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVIACVGQQNVEG 1022
            A  NATLL   L+RSTLC+K +A  ++L++EAFEWL+GE+E RFQQA  IA  G+     
Sbjct: 1    AQYNATLLMNILIRSTLCSKKMATTHKLNAEAFEWLLGEVETRFQQA--IAQPGE----- 53

Query: 1023 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 1082
              +      ++L         P ++  +   + AG++           +E  I    KT 
Sbjct: 54   --MVGALAAQSLGE-------PATQMTLNTFHYAGVSAKNVTLGVPRLKE--IINVSKTL 102

Query: 1083 ETVNVLVFL-----------------------FQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
            +T ++  FL                        +VT NTAIYYDP+P+NT I EDQE+V+
Sbjct: 103  KTPSLTCFLQGAAAKDAEKAKDVLCKLEHTTLRKVTLNTAIYYDPEPKNTCIEEDQEWVS 162

Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
            ++YEM D DP+R+SPW+LR+ELDRKRMTDKKLTME I++KI+ GFGDDLN I+ DDNAEK
Sbjct: 163  LFYEMGDLDPSRVSPWVLRLELDRKRMTDKKLTMEHIADKIHQGFGDDLNVIYADDNAEK 222

Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
            LV R+RI N  D K   EE+ +DKMEDD+FLRCIE+NMLSD+TLQGI +I KVYMH P +
Sbjct: 223  LVFRLRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGINSIAKVYMHKPTS 280

Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
            D KK++IIT  G FKAI +WLLETDGT+L+KVLSE+ +DPVRT SNDICEIF+VLGIEAV
Sbjct: 281  DDKKKVIITPEGGFKAIPEWLLETDGTALLKVLSEQYIDPVRTSSNDICEIFEVLGIEAV 340

Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1339
            RK++E+EMN V+ F G YVNYRHLALLCDVMT KGHLMAI
Sbjct: 341  RKAIEREMNNVISFDGSYVNYRHLALLCDVMTCKGHLMAI 380



 Score =  172 bits (436), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/152 (57%), Positives = 105/152 (69%), Gaps = 30/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT NTAIYYDP+P+NT I EDQE+V+++YEM D DP+R+SPW+LR+ELDRKRMTDKK
Sbjct: 134  LRKVTLNTAIYYDPEPKNTCIEEDQEWVSLFYEMGDLDPSRVSPWVLRLELDRKRMTDKK 193

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I++KI+ GFGDDLN                             I+ DDNAEKLV 
Sbjct: 194  LTMEHIADKIHQGFGDDLNV----------------------------IYADDNAEKLVF 225

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N  D K   EE+ +DKMEDD+FLRCIE
Sbjct: 226  RLRISNQADDKA--EEEQIDKMEDDVFLRCIE 255



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 43/53 (81%), Gaps = 3/53 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 822
           +C+I  VL   +VRK++E+EMN V+ F G YVNYRHLALLCDVMT KGHLMAI
Sbjct: 328 ICEIFEVLGIEAVRKAIEREMNNVISFDGSYVNYRHLALLCDVMTCKGHLMAI 380



 Score = 67.4 bits (163), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 33/38 (86%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 553
           ++E+EMN V+ F G YVNYRHLALLCDVMT KGHLMAI
Sbjct: 343 AIEREMNNVISFDGSYVNYRHLALLCDVMTCKGHLMAI 380


>gi|397135956|gb|AFO11473.1| RNA polymerase I, partial [Komagataella pastoris]
          Length = 872

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/421 (51%), Positives = 270/421 (64%), Gaps = 55/421 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           EQ+MN+L ++P WDG +PQP I+KPKPLWTGKQ+ S+ IP  +++ RT          G 
Sbjct: 357 EQVMNMLFWVPSWDGVVPQPAIMKPKPLWTGKQLLSIAIPSGIHLQRT---------DGG 407

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              +SP D  +++  G+++ G++ KK++G+  G L+H    E G ++C   +GNIQ VVN
Sbjct: 408 NSLLSPKDNGMLIVDGNVMFGVVDKKTVGSGGGGLIHTVMREKGPKICAELFGNIQKVVN 467

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 468 YWLL---------------------------------------HN-------GFSIGIGD 481

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
            IAD  T  EI  AI  AKE V E+I KA + +LE  PG TLR++FE +V+R LNDARD 
Sbjct: 482 AIADASTMKEITHAISSAKEQVQEIIYKAQHNELELKPGMTLRESFEGEVSRTLNDARDS 541

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ +L + NN+K MV AGSKGS INI+Q+ ACVGQQ VEGKRI FGF  R+LPHF 
Sbjct: 542 AGRSAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQMVEGKRIAFGFADRSLPHFT 601

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDD+ PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 602 KDDFSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 661

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MVHYD T RNS+G +IQ  YGEDGL G  VE Q IDT+  S K F  +Y  D  +E+ ++
Sbjct: 662 MVHYDGTTRNSLGDIIQFLYGEDGLDGTQVERQTIDTIPGSDKAFHKRYYVDLMDEKNSI 721

Query: 493 R 493
           +
Sbjct: 722 K 722



 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 78/102 (76%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            AQ+ ACVGQQ VEGKRI FGF  R+LPHF KDD+ PES+GFVENSYL GLTP EFFFHAM
Sbjct: 572  AQMSACVGQQMVEGKRIAFGFADRSLPHFTKDDFSPESKGFVENSYLRGLTPQEFFFHAM 631

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 632  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 673



 Score =  108 bits (270), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 106/211 (50%), Gaps = 48/211 (22%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G +IQ  YGEDGL G  VE Q IDT+  S K F 
Sbjct: 648 GYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFLYGEDGLDGTQVERQTIDTIPGSDKAFH 707

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +Y  D  +E+                     + ++ +++++ +              ++
Sbjct: 708 KRYYVDLMDEK---------------------NSIKADVIEYAA--------------DI 732

Query: 712 MGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEV------IFILQRWKL 764
           +G  ++  EL  E+E+L  DR+ LREI F +G+ N  LP NL  +      IF L R K 
Sbjct: 733 IGDVELQKELNSEYEQLVNDRKFLREIVFVNGDHNWPLPVNLRRIIQNAQQIFHLDRAKA 792

Query: 765 WG------NENLRFLCKIIFVLSVRKSVEKE 789
                      +R LCK +FVL     + KE
Sbjct: 793 SDLTIPEIIHGVRDLCKKLFVLRGENELIKE 823



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 45/57 (78%)

Query: 955  GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            GE++L K+A +NAT LFQCLVR+ L T+ + E +RL+ +AFEW++G IE +FQ++ V
Sbjct: 816  GENELIKEAQQNATSLFQCLVRARLATRRILEEFRLNRDAFEWVLGTIEAQFQRSLV 872



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 24/124 (19%)

Query: 1494 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPEDQ 1553
              P QI++PQ+N+PVMGIVQDTL  VRKMT RD F+                     E +
Sbjct: 319  AVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFI---------------------EYE 357

Query: 1554 EFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPT 1613
            + +N+ + +P +D     P +++    +   T K+L   AI   I+    D  N+ LSP 
Sbjct: 358  QVMNMLFWVPSWDGVVPQPAIMK---PKPLWTGKQLLSIAIPSGIHLQRTDGGNSLLSPK 414

Query: 1614 DKKL 1617
            D  +
Sbjct: 415  DNGM 418



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query: 30 EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
          E+   LG +  +ARP+WM++TVLPVPP  VRP++ M  + + Q+ + + L
Sbjct: 30 EDCFRLGFNEDYARPEWMIITVLPVPPPQVRPSIAMDETTQGQDDLTHKL 79


>gi|213404374|ref|XP_002172959.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
           japonicus yFS275]
 gi|212001006|gb|EEB06666.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
           japonicus yFS275]
          Length = 1748

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/414 (52%), Positives = 270/414 (65%), Gaps = 55/414 (13%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           +++ +MNI++++P WDG +P P ILKPKPLWTGKQ+ SL+IP  +N+TR       D+D 
Sbjct: 548 SRDVVMNIMLWVPNWDGVVPPPVILKPKPLWTGKQILSLVIPKGINLTR-------DDDK 600

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
             Y  I+P D  +++E+G ++ G++ KK++G S G L+H  + E G EVC  F+  IQ V
Sbjct: 601 QTY--INPNDKGMLIENGDIVYGVVDKKTVGASQGGLVHTIWKEKGPEVCKSFFNGIQRV 658

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN WLL                                       HN       G SIGI
Sbjct: 659 VNFWLL---------------------------------------HN-------GFSIGI 672

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIAD  T  +I   +K A+  V E I+ A    L+P PG TLR+TFE +V+RILN AR
Sbjct: 673 GDTIADLATMKDITRTVKDARRQVTECIKDAQQNRLKPEPGMTLRETFEAKVSRILNQAR 732

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           D  G SA+ SL + NN+K MV +GSKGS INISQ+ ACVGQQ VEGKRIPFGF+ RTLPH
Sbjct: 733 DNAGRSAEHSLKDSNNVKQMVASGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPH 792

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F KDD  PESRGF+ENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KAME
Sbjct: 793 FPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAME 852

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            VMV YD TVRN++G ++Q  YGEDGL    VE+Q  D + LS+  FE KYR D
Sbjct: 853 DVMVRYDGTVRNAMGDIVQFAYGEDGLDATIVEYQVFDALRLSNVDFEKKYRID 906



 Score =  369 bits (948), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 227/496 (45%), Positives = 305/496 (61%), Gaps = 33/496 (6%)

Query: 955  GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVIAC 1014
            G+D+++K+  ENATLLFQ L+RS L TK V   Y L+  AFEW++GEIE RFQQ QV   
Sbjct: 1005 GDDRITKEIQENATLLFQILLRSKLATKRVVMEYHLNKIAFEWIIGEIEARFQQCQVNPG 1064

Query: 1015 VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF---------VENSYLAGLTPSEFFF 1065
                 +  + I     + TL  F     G  S+           + N      TPS    
Sbjct: 1065 EMVGTLAAQSIGEPATQMTLNTF--HYAGVSSKNVTLGVPRLKEILNVAKNIKTPS-LTI 1121

Query: 1066 HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMP 1125
            + +      +D A K  +T      L  VT+ T I+YDPDPQNTVI ED++FV  ++ +P
Sbjct: 1122 YLLPEIASNMDLA-KNVQTQIEHTTLKTVTSATEIHYDPDPQNTVIDEDRDFVEAFFAIP 1180

Query: 1126 DFDPT----RISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLV 1181
            D +      + SPWLLR+ELDR +M DKKL+M  ++ KI   F  DL  I+++DNAEKL+
Sbjct: 1181 DEEVEENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKIAESFERDLFTIWSEDNAEKLI 1240

Query: 1182 LRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1241
            +R RI+  DD K  +++  +   E+D+FL+ IE +ML  ++L+G+  I +VYM       
Sbjct: 1241 IRCRIIRDDDKKADEDDGLI---EEDIFLKTIEGHMLESISLRGVPNITRVYMM-----E 1292

Query: 1242 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1301
             K +   + G F    +W+LETDG +L + ++   VDP RT+SN   E+ QVLGIEA R 
Sbjct: 1293 HKIVHQNDDGVFVRDDEWVLETDGINLAESMAVEGVDPSRTYSNSFVEVLQVLGIEATRS 1352

Query: 1302 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1361
            ++ KE+  V++F G YVNYRHLALLCDVMT++GHLMAITRHGINR +TGALMRCSFEETV
Sbjct: 1353 ALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETV 1412

Query: 1362 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD-----AEKCKDGIEIPLATG 1416
            ++LMDAAA  E D  RGVSENI++GQL  MGTG FD+ LD     +E    G+   + TG
Sbjct: 1413 EILMDAAASGEKDGCRGVSENIMLGQLAPMGTGSFDVFLDQDLLLSEVPSAGMPTLVGTG 1472

Query: 1417 MMGGPAGMFFGSAATP 1432
            M  G A +  GS ATP
Sbjct: 1473 M--GKAILPEGS-ATP 1485



 Score =  166 bits (419), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/186 (50%), Positives = 118/186 (63%), Gaps = 22/186 (11%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + + R ++ KE+  V++F G YVNYRHLALLCDVMT++GHLMAITRHGINR +T
Sbjct: 1341 VLQVLGIEATRSALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAET 1400

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD-----AEK 887
            GALMRCSFEETV++LMDAAA  E D  RGVSENI++GQL  MGTG FD+ LD     +E 
Sbjct: 1401 GALMRCSFEETVEILMDAAASGEKDGCRGVSENIMLGQLAPMGTGSFDVFLDQDLLLSEV 1460

Query: 888  CKDGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGP 947
               G+   + TGM  G A +  GS ATP   SP              L   G   +P   
Sbjct: 1461 PSAGMPTLVGTGM--GKAILPEGS-ATPYERSP--------------LADSGYMGSPDDA 1503

Query: 948  GFSPSV 953
             FSP +
Sbjct: 1504 AFSPLI 1509



 Score =  140 bits (353), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 77/102 (75%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF+ RTLPHF KDD  PESRGF+ENSYL GLTP EFFFHAM
Sbjct: 765  SQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAM 824

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  + YD   +N +
Sbjct: 825  AGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAM 866



 Score =  124 bits (310), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 56/78 (71%), Positives = 67/78 (85%)

Query: 515  TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
            +++ KE+  V++F G YVNYRHLALLCDVMT++GHLMAITRHGINR +TGALMRCSFEET
Sbjct: 1352 SALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEET 1411

Query: 575  VDVLMDAAAHAEADPMRG 592
            V++LMDAAA  E D  RG
Sbjct: 1412 VEILMDAAASGEKDGCRG 1429



 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 89/156 (57%), Gaps = 35/156 (22%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPT----RISPWLLRIELDRKRM 1584
            L  VT+ T I+YDPDPQNTVI ED++FV  ++ +PD +      + SPWLLR+ELDR +M
Sbjct: 1146 LKTVTSATEIHYDPDPQNTVIDEDRDFVEAFFAIPDEEVEENLYKQSPWLLRLELDRAKM 1205

Query: 1585 TDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAE 1644
             DKKL+M  ++ KI   F  DL T                            I+++DNAE
Sbjct: 1206 LDKKLSMSDVAGKIAESFERDLFT----------------------------IWSEDNAE 1237

Query: 1645 KLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            KL++R RI+  DD K  +++  +   E+D+FL+ IE
Sbjct: 1238 KLIIRCRIIRDDDKKADEDDGLI---EEDIFLKTIE 1270



 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 82/166 (49%), Gaps = 40/166 (24%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME VMV YD TVRN++G ++Q  YGEDGL    VE+Q  D + LS+  FE
Sbjct: 841 GYIQRRLVKAMEDVMVRYDGTVRNAMGDIVQFAYGEDGLDATIVEYQVFDALRLSNVDFE 900

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KYR D   ++++       +       GDV                         ++EL
Sbjct: 901 KKYRIDLVEDKKICLHMENSI------EGDV------------------------AMQEL 930

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVI 756
                    L++E+ +L  DRE  R  IF +GE+    P N+  +I
Sbjct: 931 ---------LDEEYSQLLTDRELCRGFIFPNGEARWPQPVNVHRII 967



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 24/132 (18%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            ++ I + PRQI++PQ+N+PVMGIVQDTL  VRK + RD FL +                 
Sbjct: 507  IQEIAMVPRQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLSRDVV-------------- 552

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNT 1608
                   +N+   +P++D     P +L+    +   T K++    I + IN    DD  T
Sbjct: 553  -------MNIMLWVPNWDGVVPPPVILK---PKPLWTGKQILSLVIPKGINLTRDDDKQT 602

Query: 1609 PLSPTDKKLTME 1620
             ++P DK + +E
Sbjct: 603  YINPNDKGMLIE 614


>gi|19112465|ref|NP_595673.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe
           972h-]
 gi|548817|sp|P36594.1|RPB1_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb1;
           Short=RNA polymerase II subunit 1; Short=RNA polymerase
           II subunit B1; AltName: Full=DNA-directed RNA polymerase
           III largest subunit
 gi|256599715|pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
 gi|256599727|pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
 gi|5055|emb|CAA39916.1| RNA polymerase II large subunit [Schizosaccharomyces pombe]
 gi|6018696|emb|CAB57941.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe]
          Length = 1752

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/415 (53%), Positives = 271/415 (65%), Gaps = 55/415 (13%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           +MNI++++P WDG +P P ILKPK LWTGKQ+ SLIIP  +N+ R      DD+ S    
Sbjct: 552 VMNIMLWVPDWDGILPPPVILKPKVLWTGKQILSLIIPKGINLIRD-----DDKQS---- 602

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
             +P D+ +++E+G ++ G++ KK++G S G L+H  + E G E+C  F+  IQ VVN W
Sbjct: 603 LSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNYW 662

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL                                       HN       G SIGIGDTI
Sbjct: 663 LL---------------------------------------HN-------GFSIGIGDTI 676

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
           AD  T  E+   +K+A+  V E IQ A +  L+P PG TLR++FE +V+RILN ARD  G
Sbjct: 677 ADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAKVSRILNQARDNAG 736

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+ SL + NN+K MV AGSKGS INISQ+ ACVGQQ VEGKRIPFGF+ RTLPHF KD
Sbjct: 737 RSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPHFPKD 796

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D  PESRGF+ENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KAME VMV
Sbjct: 797 DDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMV 856

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
            YD TVRN++G +IQ  YGEDGL    VE+Q  D++ LS K+FE KYR D   +R
Sbjct: 857 RYDGTVRNAMGDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFEKKYRIDLMEDR 911



 Score =  362 bits (930), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 217/494 (43%), Positives = 300/494 (60%), Gaps = 29/494 (5%)

Query: 955  GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVIAC 1014
            G D++++    NATLLFQ L+RS    K V   YRL+  AFEW++GE+E RFQQA V   
Sbjct: 1005 GSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPG 1064

Query: 1015 VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF---------VENSYLAGLTPSEFFF 1065
                 +  + I     + TL  F     G  S+           + N      TPS    
Sbjct: 1065 EMVGTLAAQSIGEPATQMTLNTF--HYAGVSSKNVTLGVPRLKEILNVAKNIKTPS-LTI 1121

Query: 1066 HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMP 1125
            + M      +D A K  +T      L  VT+ T I+YDPDPQ+TVI ED++FV  ++ +P
Sbjct: 1122 YLMPWIAANMDLA-KNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIP 1180

Query: 1126 DFDPT----RISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLV 1181
            D +      + SPWLLR+ELDR +M DKKL+M  ++ KI   F  DL  I+++DNA+KL+
Sbjct: 1181 DEEVEENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKIAESFERDLFTIWSEDNADKLI 1240

Query: 1182 LRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1241
            +R RI+  DD K +D+++ +   E+D+FL+ IE +ML  ++L+G+  I +VYM       
Sbjct: 1241 IRCRIIRDDDRKAEDDDNMI---EEDVFLKTIEGHMLESISLRGVPNITRVYMM-----E 1292

Query: 1242 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1301
             K +   E G F+   +W+LETDG +L + ++   VD  RT+SN   EI Q+LGIEA R 
Sbjct: 1293 HKIVRQIEDGTFERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRS 1352

Query: 1302 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1361
            ++ KE+  V++F G YVNYRHLALLCDVMT++GHLMAITRHGINR +TGALMRCSFEETV
Sbjct: 1353 ALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETV 1412

Query: 1362 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD---GIEIPLATGMM 1418
            ++LMDAAA  E D  +G+SENI++GQL  MGTG FD+ LD +   +   G  +P   G  
Sbjct: 1413 EILMDAAASGEKDDCKGISENIMLGQLAPMGTGAFDIYLDQDMLMNYSLGTAVPTLAGSG 1472

Query: 1419 GGPAGMFFGSAATP 1432
             G + +  G A TP
Sbjct: 1473 MGTSQLPEG-AGTP 1485



 Score =  167 bits (424), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/186 (47%), Positives = 117/186 (62%), Gaps = 18/186 (9%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +I+ + + R ++ KE+  V++F G YVNYRHLALLCDVMT++GHLMAITRHGINR +T
Sbjct: 1341 ILQILGIEATRSALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAET 1400

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD-- 890
            GALMRCSFEETV++LMDAAA  E D  +G+SENI++GQL  MGTG FD+ LD +   +  
Sbjct: 1401 GALMRCSFEETVEILMDAAASGEKDDCKGISENIMLGQLAPMGTGAFDIYLDQDMLMNYS 1460

Query: 891  -GIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGF 949
             G  +P   G   G + +  G A TP   SP              ++  G   +P    F
Sbjct: 1461 LGTAVPTLAGSGMGTSQLPEG-AGTPYERSP--------------MVDSGFVGSPDAAAF 1505

Query: 950  SPSVAG 955
            SP V G
Sbjct: 1506 SPLVQG 1511



 Score =  140 bits (354), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 77/102 (75%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF+ RTLPHF KDD  PESRGF+ENSYL GLTP EFFFHAM
Sbjct: 765  SQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAM 824

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  + YD   +N +
Sbjct: 825  AGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAM 866



 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/78 (70%), Positives = 67/78 (85%)

Query: 515  TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
            +++ KE+  V++F G YVNYRHLALLCDVMT++GHLMAITRHGINR +TGALMRCSFEET
Sbjct: 1352 SALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEET 1411

Query: 575  VDVLMDAAAHAEADPMRG 592
            V++LMDAAA  E D  +G
Sbjct: 1412 VEILMDAAASGEKDDCKG 1429



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 35/156 (22%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPT----RISPWLLRIELDRKRM 1584
            L  VT+ T I+YDPDPQ+TVI ED++FV  ++ +PD +      + SPWLLR+ELDR +M
Sbjct: 1146 LSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEVEENLYKQSPWLLRLELDRAKM 1205

Query: 1585 TDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAE 1644
             DKKL+M  ++ KI   F  DL T                            I+++DNA+
Sbjct: 1206 LDKKLSMSDVAGKIAESFERDLFT----------------------------IWSEDNAD 1237

Query: 1645 KLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            KL++R RI+  DD K +D+++ +   E+D+FL+ IE
Sbjct: 1238 KLIIRCRIIRDDDRKAEDDDNMI---EEDVFLKTIE 1270



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 87/166 (52%), Gaps = 40/166 (24%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME VMV YD TVRN++G +IQ  YGEDGL    VE+Q  D++ LS K+FE
Sbjct: 841 GYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFE 900

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KYR D   +R L  ++ E+                              I N+  +++L
Sbjct: 901 KKYRIDLMEDRSL-SLYMEN-----------------------------SIENDSSVQDL 930

Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVI 756
                    L++E+ +L  DRE L + IF  G++   LP N+  +I
Sbjct: 931 ---------LDEEYTQLVADRELLCKFIFPKGDARWPLPVNVQRII 967



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 24/132 (18%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            ++ I + P+QI++PQ+N+PVMGIVQDTL  VRK + RD FL +              N V
Sbjct: 507  IQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTR--------------NAV 552

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNT 1608
            +       N+   +PD+D     P +L+ ++     T K++    I + IN    DD  +
Sbjct: 553  M-------NIMLWVPDWDGILPPPVILKPKV---LWTGKQILSLIIPKGINLIRDDDKQS 602

Query: 1609 PLSPTDKKLTME 1620
              +PTD  + +E
Sbjct: 603  LSNPTDSGMLIE 614


>gi|397135914|gb|AFO11452.1| RNA polymerase I, partial [Cephaloascus fragrans]
          Length = 871

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/421 (51%), Positives = 274/421 (65%), Gaps = 55/421 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MNIL ++P WDG +P+P ILKPKPLWTGKQ+ S+ IP  +++ R      DD +S  
Sbjct: 356 DQVMNILYWIPGWDGVIPKPAILKPKPLWTGKQMVSMAIPKGIHLQRF-----DDGNS-- 408

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              +SP DT +++ +G ++ G++ KK++G + G L+H    E G  +C   +GNIQ VVN
Sbjct: 409 --MLSPKDTGMLIINGEIMFGVVDKKTVGATGGGLIHTVMREKGPAICATLFGNIQKVVN 466

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 467 YWLL---------------------------------------HN-------GFSIGIGD 480

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T  +I   I +AK+ V E+I +A    L P PG TLR++FE+ V+R+LN ARD 
Sbjct: 481 TIADASTMRDITNTISEAKQKVQEIIIEAQQNTLSPEPGMTLRESFEHNVSRVLNQARDT 540

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQQ VEGKRIPFGF  R+LPHF 
Sbjct: 541 AGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRSLPHFT 600

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 601 KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 660

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MVHYD T RNS+G +IQ  YGEDG+ G  VE Q IDT++ S   FE +YR D  ++  ++
Sbjct: 661 MVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSIDTISGSDTSFERRYRIDLLDDSKSI 720

Query: 493 R 493
           R
Sbjct: 721 R 721



 Score =  144 bits (364), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF  R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 571  SQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 630

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 631  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 672



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 89/166 (53%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G +IQ  YGEDG+ G  VE Q IDT++ S   FE
Sbjct: 647 GYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSIDTISGSDTSFE 706

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YR D  ++                                   K +R  F E+  +E+
Sbjct: 707 RRYRIDLLDDS----------------------------------KSIRESFLENG-KEI 731

Query: 712 MGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEVI 756
            G  ++   L++E+ +L EDR  LR+I F +G++N  LP N+  ++
Sbjct: 732 RGDVELQKVLDEEYNQLLEDRRYLRDICFPNGDNNWPLPVNIRRIV 777



 Score = 73.9 bits (180), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 45/59 (76%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            + G+  L K+A ENATLLFQCL+RS L T+ V E YRL+  AFEW++GEIE +FQ++ V
Sbjct: 813  IRGKTLLMKEAQENATLLFQCLLRSRLATRRVIEEYRLNRLAFEWIMGEIETQFQKSIV 871



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 24/126 (19%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   P QI++PQ+N+PVMGIVQDTL  +RKMT RD+F++         YD       
Sbjct: 313  LSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE---------YD------- 356

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNT 1608
                 + +N+ Y +P +D     P +L+    +   T K++   AI + I+    DD N+
Sbjct: 357  -----QVMNILYWIPGWDGVIPKPAILK---PKPLWTGKQMVSMAIPKGIHLQRFDDGNS 408

Query: 1609 PLSPTD 1614
             LSP D
Sbjct: 409  MLSPKD 414


>gi|167527458|ref|XP_001748061.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773479|gb|EDQ87118.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1307

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/411 (51%), Positives = 270/411 (65%), Gaps = 49/411 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDED-S 130
           +EQ+M++LM++P WDGK+P P I+ PK LWTGKQ+ S+IIP  +N+   HSTH D  D +
Sbjct: 40  REQLMHLLMWMPNWDGKIPVPAIVAPKELWTGKQLVSMIIPRRINLEGKHSTHEDKVDRA 99

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
            PY  +   DTKV++  G L+ GILCK  LG   G ++H   +E G E   +FYGNIQTV
Sbjct: 100 TPYLTVH--DTKVIISKGVLISGILCKSMLGAKGGGVIHAITVEHGLEEARQFYGNIQTV 157

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           +NNWLL+ G                                              HSIGI
Sbjct: 158 INNWLLIHG----------------------------------------------HSIGI 171

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GD +AD  T  +I+   ++A   V E+I KA   D++P PGNT+R+TFE +VN +LND  
Sbjct: 172 GDAVADQDTNKKIEELTQEATRSVDELITKAQADDIKPKPGNTVRETFEVEVNTVLNDMV 231

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           +K G +A+ SL+ +NN KAM  AGSKG  INISQ+IACVGQQNVEGKRIPFGF+ RTLPH
Sbjct: 232 NKAGKAAQNSLSIHNNFKAMSTAGSKGGPINISQIIACVGQQNVEGKRIPFGFKYRTLPH 291

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F+KDDYGP+SRGFV NSY  GL+  E FFHAMGGREGLIDTAVKTAETGYIQRRL+K+ME
Sbjct: 292 FVKDDYGPDSRGFVFNSYFKGLSAQEMFFHAMGGREGLIDTAVKTAETGYIQRRLVKSME 351

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKY 481
            + ++YD ++RNS G LIQL YGEDG+ G  +E Q + T+  S + FE  +
Sbjct: 352 GLRLNYDGSIRNSNGDLIQLCYGEDGMDGACLEKQGLPTLTPSDQGFERDF 402



 Score =  332 bits (852), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 202/514 (39%), Positives = 290/514 (56%), Gaps = 62/514 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            + G+D LSK A  NATLLF C +RS L ++     +RL+++AF+W++GE+E RF QAQ  
Sbjct: 505  IPGDDPLSKVAQRNATLLFNCNLRSVLSSRQCIVRHRLNTKAFDWILGEVEKRFMQAQAQ 564

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 565  PGEMVGALAAQSLGEPATQMTLNTFHLAGVSAKNVTLGVPR--LKEIINVSKKPK----- 617

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLID--TAVKTAETVNVLVFLFQVTANTAIYYDPDPQN 1108
                    TPS   F    G +   D  TA+K   ++     L  +  +++IYYDPD  N
Sbjct: 618  --------TPSMVLFI---GEDKYQDRNTAMKVLFSIEHST-LKTIIHSSSIYYDPDEMN 665

Query: 1109 TVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFG--- 1165
            +VIPED+EF+   Y++ DFD  +   W+LR EL R+ +  +++  E +++ I    G   
Sbjct: 666  SVIPEDREFLE-NYDIGDFDMNKWHRWVLRWELSRREINTRRILPENVAKLIKRAMGAVQ 724

Query: 1166 ----DDLNCIFNDDNAE-KLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSD 1220
                D +   F   N E   V+RIR+        +D+ +A D +  D +LR +E  +L  
Sbjct: 725  DTERDTVMVHFQQGNIEDHTVMRIRLP-------RDKSEADDSLGPDAYLRLLEDRILHS 777

Query: 1221 MTLQGIEAIGKVYMHL--PQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVD 1278
            +TLQGI  I + Y+     +   K+RI I E GEFK    +L+ETDG+S+  V ++R VD
Sbjct: 778  ITLQGIPDITRGYLVTGDSKQPGKQRIFINEEGEFKPQDQFLVETDGSSIQSVFAQRYVD 837

Query: 1279 PVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMA 1338
              R+ SNDI EIF   GIE  RK++E EM  V+ F G YVN RHL+LLCD+MT KG+LMA
Sbjct: 838  QERSTSNDIVEIFSTFGIEGARKAIEAEMYNVISFGGSYVNARHLSLLCDIMTTKGYLMA 897

Query: 1339 ITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1398
            ITRHG+NRQ+TG LM+ SFEETVD+L++AAAH E D ++GVSENI++GQ+   GTGCFDL
Sbjct: 898  ITRHGVNRQNTGVLMKASFEETVDILLEAAAHGETDYLKGVSENIMLGQVIPGGTGCFDL 957

Query: 1399 LLDAEKCKDGIEIPLATGMMGGPAGMFFGSAATP 1432
            LLD ++ +  + +    G +    G   G AATP
Sbjct: 958  LLDQDRLQHAVPVEPGLGGLFAKGGDANG-AATP 990



 Score =  173 bits (439), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 94/181 (51%), Positives = 119/181 (65%), Gaps = 15/181 (8%)

Query: 782  VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 841
             RK++E EM  V+ F G YVN RHL+LLCD+MT KG+LMAITRHG+NRQ+TG LM+ SFE
Sbjct: 858  ARKAIEAEMYNVISFGGSYVNARHLSLLCDIMTTKGYLMAITRHGVNRQNTGVLMKASFE 917

Query: 842  ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMM 901
            ETVD+L++AAAH E D ++GVSENI++GQ+   GTGCFDLLLD ++ +  + +    G +
Sbjct: 918  ETVDILLEAAAHGETDYLKGVSENIMLGQVIPGGTGCFDLLLDQDRLQHAVPVEPGLGGL 977

Query: 902  GGPAGMFFGSA-------ATPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPSVA 954
                G   G+A       ATP  M   MTP   S+P        GA  TP G GFSP VA
Sbjct: 978  FAKGGDANGAATPWGEGNATPFGMG-GMTPQNASSPYL------GAGQTPIG-GFSPVVA 1029

Query: 955  G 955
            G
Sbjct: 1030 G 1030



 Score =  145 bits (366), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/219 (41%), Positives = 122/219 (55%), Gaps = 25/219 (11%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+IACVGQQNVEGKRIPFGF+ RTLPHF+KDDYGP+SRGFV NSY  GL+  E FFHAM
Sbjct: 264  SQIIACVGQQNVEGKRIPFGFKYRTLPHFVKDDYGPDSRGFVFNSYFKGLSAQEMFFHAM 323

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +      + YD   +N+    + + + + Y      
Sbjct: 324  GGREGLIDTAVKTAETGYIQRRLVKSMEGLRLNYDGSIRNS----NGDLIQLCYG----- 374

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRI-- 1186
                        +D   +  + L     S++   GF  D     N   + +  L   I  
Sbjct: 375  ---------EDGMDGACLEKQGLPTLTPSDQ---GFERDFCNTGNKLASLRQYLVGNIVD 422

Query: 1187 -MNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTL 1223
             +N+DD  +Q+ ED   +++DD  FLR +     +D+ L
Sbjct: 423  DINADDEMLQELEDEWQRLQDDRQFLRSVFPKGEADVVL 461



 Score =  116 bits (291), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 64/77 (83%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
           ++E EM  V+ F G YVN RHL+LLCD+MT KG+LMAITRHG+NRQ+TG LM+ SFEETV
Sbjct: 861 AIEAEMYNVISFGGSYVNARHLSLLCDIMTTKGYLMAITRHGVNRQNTGVLMKASFEETV 920

Query: 576 DVLMDAAAHAEADPMRG 592
           D+L++AAAH E D ++G
Sbjct: 921 DILLEAAAHGETDYLKG 937



 Score =  104 bits (259), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 92/170 (54%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+K+ME + ++YD ++RNS G LIQL YGEDG+ G  +E Q + T+  S + FE
Sbjct: 340 GYIQRRLVKSMEGLRLNYDGSIRNSNGDLIQLCYGEDGMDGACLEKQGLPTLTPSDQGFE 399

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
                                 R+   +G+ ++ L + +V              +++ ++
Sbjct: 400 ----------------------RDFCNTGNKLASLRQYLVG-------------NIVDDI 424

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
               +++ ELE EW++L +DR+ LR +F  GE++VVLP  L  +I   Q+
Sbjct: 425 NADDEMLQELEDEWQRLQDDRQFLRSVFPKGEADVVLPVQLRRLIISAQK 474



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 31/171 (18%)

Query: 1513 QDTLTAVRKM-TKRDVFLDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRIS 1571
            QD  TA++ + +     L  +  +++IYYDPD  N+VIPED+EF+   Y++ DFD  +  
Sbjct: 631  QDRNTAMKVLFSIEHSTLKTIIHSSSIYYDPDEMNSVIPEDREFLE-NYDIGDFDMNKWH 689

Query: 1572 PWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFG 1631
             W+LR EL R+ +  +++  E +++ I                 K  M A+ +       
Sbjct: 690  RWVLRWELSRREINTRRILPENVAKLI-----------------KRAMGAVQDTER---- 728

Query: 1632 DDLNCIFNDDNAE-KLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEE 1681
            D +   F   N E   V+RIR+        +D+ +A D +  D +LR +E+
Sbjct: 729  DTVMVHFQQGNIEDHTVMRIRL-------PRDKSEADDSLGPDAYLRLLED 772



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 31/35 (88%)

Query: 1497 RQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            + I+TPQ+NRPVMGI+QDTLTA R+MT RD F+++
Sbjct: 6    KNILTPQSNRPVMGIIQDTLTAARRMTFRDCFIER 40


>gi|397135973|gb|AFO11481.1| RNA polymerase I, partial [Candida caseinolytica]
          Length = 872

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/414 (51%), Positives = 267/414 (64%), Gaps = 55/414 (13%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           N EQ+MN+L+++P WDG++P P I+KPKPLWTGKQ+ SL IP  +N+ R    +P     
Sbjct: 355 NYEQVMNVLLWVPDWDGQVPIPAIMKPKPLWTGKQIVSLCIPKGINLIRIDDNNP----- 409

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
                 SP D  +++E+G ++ G++ KK++G + G L+H    E G +VC  F+  IQ V
Sbjct: 410 ----LSSPKDNGMLIENGEIIFGVVDKKTVGATGGGLVHTIMREKGPQVCCNFFTGIQMV 465

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN WLL                                       HN       G SIGI
Sbjct: 466 VNYWLL---------------------------------------HN-------GFSIGI 479

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIAD  T  +I   I  AKE V ++I+ A    L   PG TLR++FE++V++ LN AR
Sbjct: 480 GDTIADAATMRDITNTITAAKEKVQDIIRDAQENRLPAEPGMTLRESFEHKVSQTLNQAR 539

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           D TG SA+ SL + NN+K MV AGSKGS INISQ+ ACVGQQ VEGKRIPFGF+ R+LPH
Sbjct: 540 DTTGRSAEMSLKDTNNVKQMVTAGSKGSFINISQMSACVGQQIVEGKRIPFGFKDRSLPH 599

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F KDDY PES+GF+ENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E
Sbjct: 600 FTKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALE 659

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            +MVHYD T RNS+G +IQ  YGEDG+ G +VE Q IDT+  S   FE +YR D
Sbjct: 660 DIMVHYDGTTRNSLGDVIQFVYGEDGVDGTSVEKQTIDTIPGSDASFEKRYRID 713



 Score =  145 bits (367), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 80/102 (78%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF+ R+LPHF KDDY PES+GF+ENSYL GLTP EFFFHAM
Sbjct: 572  SQMSACVGQQIVEGKRIPFGFKDRSLPHFTKDDYSPESKGFIENSYLRGLTPQEFFFHAM 631

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 632  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 673



 Score =  100 bits (249), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 88/169 (52%), Gaps = 42/169 (24%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G +IQ  YGEDG+ G +VE Q IDT+  S   FE
Sbjct: 648 GYIQRRLVKALEDIMVHYDGTTRNSLGDVIQFVYGEDGVDGTSVEKQTIDTIPGSDASFE 707

Query: 652 DKYR---FDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVL 708
            +YR    DPS            +   L+ SG                            
Sbjct: 708 KRYRIDLLDPSTS----------ISESLLESG---------------------------- 729

Query: 709 RELMGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEVI 756
           +++ G   +   L++E+++L +DR+ LRE+ F +G+ N  LP NL  +I
Sbjct: 730 KDIKGDVKLQKVLDQEYDQLLKDRKYLREVCFPNGDYNWPLPVNLRRII 778



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 46/59 (77%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+ +L+++A ENATLLFQCL+RS L  + V E ++LS  +FEW++GEIE +FQ++ V
Sbjct: 814  VRGKGKLAEEAQENATLLFQCLLRSRLAARRVIEEFKLSRISFEWVMGEIETQFQKSIV 872



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 24/129 (18%)

Query: 1492 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPE 1551
            + + P QI++PQ+N+PVMGIVQD+L  +RK+T RD FL+                     
Sbjct: 317  LAMVPLQIVSPQSNKPVMGIVQDSLCGIRKLTLRDTFLNY-------------------- 356

Query: 1552 DQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLS 1611
             ++ +NV   +PD+D     P +++    +   T K++    I + IN    DD N   S
Sbjct: 357  -EQVMNVLLWVPDWDGQVPIPAIMK---PKPLWTGKQIVSLCIPKGINLIRIDDNNPLSS 412

Query: 1612 PTDKKLTME 1620
            P D  + +E
Sbjct: 413  PKDNGMLIE 421


>gi|12642614|gb|AAK00311.1|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga
           brevicollis]
          Length = 1743

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/411 (51%), Positives = 269/411 (65%), Gaps = 49/411 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDED-S 130
           +EQ+M++LM++P WDGK+P P I+ PK LWTGKQ+ S+IIP  +N+   HSTH D  D +
Sbjct: 476 REQLMHLLMWMPNWDGKIPVPAIVAPKELWTGKQLVSMIIPRRINLEGKHSTHEDKVDRA 535

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
            PY  +   DTKV++  G L+ GILCK  LG   G ++H   +E G E   +FYGNIQTV
Sbjct: 536 TPYLTVH--DTKVIISKGVLISGILCKSMLGAKGGGVIHAITVEHGLEEARQFYGNIQTV 593

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           +NNWLL+ G                                              HSIGI
Sbjct: 594 INNWLLIHG----------------------------------------------HSIGI 607

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GD +AD  T   I+   ++A   V E+I KA   D++P PGNT+R+TFE +VN +LND  
Sbjct: 608 GDAVADQDTNKRIEELTQEATRSVDELITKAQADDIKPKPGNTVRETFEVEVNTVLNDMV 667

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           +K G SA+ SL+ +NN KAM  AGSKG  INISQ+IACVGQQNVEGKRIPFGF+ RTLPH
Sbjct: 668 NKAGKSAQNSLSIHNNFKAMSTAGSKGGPINISQIIACVGQQNVEGKRIPFGFKYRTLPH 727

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F+KDDYGP+SRGFV NSY  GL+  E FFHAMGGREGLIDTAVKTAETGYIQRRL+K+ME
Sbjct: 728 FVKDDYGPDSRGFVFNSYFKGLSAQEMFFHAMGGREGLIDTAVKTAETGYIQRRLVKSME 787

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKY 481
            + ++YD ++RNS G LIQL YGEDG+ G  +E Q + T+  S + FE  +
Sbjct: 788 GLRLNYDGSIRNSNGDLIQLCYGEDGMDGACLEKQGLPTLTPSDQGFERDF 838



 Score =  332 bits (851), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 202/514 (39%), Positives = 290/514 (56%), Gaps = 62/514 (12%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ-- 1010
            + G+D LSK A  NATLLF C +RS L ++     +RL+++AF+W++GE+E RF QAQ  
Sbjct: 941  IPGDDPLSKVAQRNATLLFNCNLRSVLSSRQCIVRHRLNTKAFDWILGEVEKRFMQAQAQ 1000

Query: 1011 ---VIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
               ++  +  Q+                 V  K +  G  +  L   I     P+     
Sbjct: 1001 PGEMVGALAAQSLGEPATQMTLNTFHLAGVSAKNVTLGVPR--LKEIINVSKKPK----- 1053

Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLID--TAVKTAETVNVLVFLFQVTANTAIYYDPDPQN 1108
                    TPS   F    G +   D  TA+K   ++     L  +  +++IYYDPD  N
Sbjct: 1054 --------TPSMVLFI---GEDKYQDRNTAMKVLFSIEHST-LKTIIHSSSIYYDPDEMN 1101

Query: 1109 TVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFG--- 1165
            +VIPED+EF+   Y++ DFD  +   W+LR EL R+ +  +++  E +++ I    G   
Sbjct: 1102 SVIPEDREFLE-NYDIGDFDMNKWHRWVLRWELSRREINTRRILPENVAKLIKRAMGAVQ 1160

Query: 1166 ----DDLNCIFNDDNAE-KLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSD 1220
                D +   F   N E   V+RIR+        +D+ +A D +  D +LR +E  +L  
Sbjct: 1161 DTERDTVMVHFQQGNIEDHTVMRIRLP-------RDKSEADDSLGPDAYLRLLEDRILHS 1213

Query: 1221 MTLQGIEAIGKVYMHL--PQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVD 1278
            +TLQGI  I + Y+     +   K+RI I E GEFK    +L+ETDG+S+  V ++R VD
Sbjct: 1214 ITLQGIPDITRGYLVTGDSKQPGKQRIFINEEGEFKPQDQFLVETDGSSIQSVFAQRYVD 1273

Query: 1279 PVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMA 1338
              R+ SNDI EIF   GIE  RK++E EM  V+ F G YVN RHL+LLCD+MT KG+LMA
Sbjct: 1274 QERSTSNDIVEIFSTFGIEGARKAIEAEMYNVISFGGSYVNARHLSLLCDIMTTKGYLMA 1333

Query: 1339 ITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1398
            ITRHG+NRQ+TG LM+ SFEETVD+L++AAAH E D ++GVSENI++GQ+   GTGCFDL
Sbjct: 1334 ITRHGVNRQNTGVLMKASFEETVDILLEAAAHGETDYLKGVSENIMLGQVIPGGTGCFDL 1393

Query: 1399 LLDAEKCKDGIEIPLATGMMGGPAGMFFGSAATP 1432
            LLD ++ +  + +    G +    G   G AATP
Sbjct: 1394 LLDQDRLQHAVPVEPGLGGLFAKGGDANG-AATP 1426



 Score =  176 bits (445), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/181 (51%), Positives = 120/181 (66%), Gaps = 15/181 (8%)

Query: 782  VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 841
             RK++E EM  V+ F G YVN RHL+LLCD+MT KG+LMAITRHG+NRQ+TG LM+ SFE
Sbjct: 1294 ARKAIEAEMYNVISFGGSYVNARHLSLLCDIMTTKGYLMAITRHGVNRQNTGVLMKASFE 1353

Query: 842  ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMM 901
            ETVD+L++AAAH E D ++GVSENI++GQ+   GTGCFDLLLD ++ +  + +    G +
Sbjct: 1354 ETVDILLEAAAHGETDYLKGVSENIMLGQVIPGGTGCFDLLLDQDRLQHAVPVEPGLGGL 1413

Query: 902  GGPAGMFFGSA-------ATPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPSVA 954
                G   G+A       ATP  M   MTP   S+P +      GA  TP G GFSP VA
Sbjct: 1414 FAKGGDANGAATPWGEGNATPFGMG-GMTPQNASSPYF------GAGQTPIG-GFSPVVA 1465

Query: 955  G 955
            G
Sbjct: 1466 G 1466



 Score =  145 bits (366), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/219 (41%), Positives = 122/219 (55%), Gaps = 25/219 (11%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+IACVGQQNVEGKRIPFGF+ RTLPHF+KDDYGP+SRGFV NSY  GL+  E FFHAM
Sbjct: 700  SQIIACVGQQNVEGKRIPFGFKYRTLPHFVKDDYGPDSRGFVFNSYFKGLSAQEMFFHAM 759

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +      + YD   +N+    + + + + Y      
Sbjct: 760  GGREGLIDTAVKTAETGYIQRRLVKSMEGLRLNYDGSIRNS----NGDLIQLCYG----- 810

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRI-- 1186
                        +D   +  + L     S++   GF  D     N   + +  L   I  
Sbjct: 811  ---------EDGMDGACLEKQGLPTLTPSDQ---GFERDFCNTGNKLASLRQYLVGNIVD 858

Query: 1187 -MNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTL 1223
             +N+DD  +Q+ ED   +++DD  FLR +     +D+ L
Sbjct: 859  DINADDEMLQELEDEWQRLQDDRQFLRSVFPKGEADVVL 897



 Score =  116 bits (290), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 64/77 (83%)

Query: 516  SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
            ++E EM  V+ F G YVN RHL+LLCD+MT KG+LMAITRHG+NRQ+TG LM+ SFEETV
Sbjct: 1297 AIEAEMYNVISFGGSYVNARHLSLLCDIMTTKGYLMAITRHGVNRQNTGVLMKASFEETV 1356

Query: 576  DVLMDAAAHAEADPMRG 592
            D+L++AAAH E D ++G
Sbjct: 1357 DILLEAAAHGETDYLKG 1373



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 92/170 (54%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+K+ME + ++YD ++RNS G LIQL YGEDG+ G  +E Q + T+  S + FE
Sbjct: 776 GYIQRRLVKSMEGLRLNYDGSIRNSNGDLIQLCYGEDGMDGACLEKQGLPTLTPSDQGFE 835

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
                                 R+   +G+ ++ L + +V              +++ ++
Sbjct: 836 ----------------------RDFCNTGNKLASLRQYLVG-------------NIVDDI 860

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
               +++ ELE EW++L +DR+ LR +F  GE++VVLP  L  +I   Q+
Sbjct: 861 NADDEMLQELEDEWQRLQDDRQFLRSVFPKGEADVVLPVQLRRLIISAQK 910



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 31/171 (18%)

Query: 1513 QDTLTAVRKM-TKRDVFLDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRIS 1571
            QD  TA++ + +     L  +  +++IYYDPD  N+VIPED+EF+   Y++ DFD  +  
Sbjct: 1067 QDRNTAMKVLFSIEHSTLKTIIHSSSIYYDPDEMNSVIPEDREFLE-NYDIGDFDMNKWH 1125

Query: 1572 PWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFG 1631
             W+LR EL R+ +  +++  E +++ I                 K  M A+ +       
Sbjct: 1126 RWVLRWELSRREINTRRILPENVAKLI-----------------KRAMGAVQDTER---- 1164

Query: 1632 DDLNCIFNDDNAE-KLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEE 1681
            D +   F   N E   V+RIR+        +D+ +A D +  D +LR +E+
Sbjct: 1165 DTVMVHFQQGNIEDHTVMRIRL-------PRDKSEADDSLGPDAYLRLLED 1208



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 34/43 (79%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +E I +  + I+TPQ+NRPVMGI+QDTLT  R+MT RD F+++
Sbjct: 434  IEEIMMVHKNILTPQSNRPVMGIIQDTLTVARRMTFRDCFIER 476



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 33/46 (71%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
           E+  I+G DP + RPD+M++ VLPVPPL+VRP+V +  S  + + +
Sbjct: 150 EDCRIIGFDPVYTRPDFMIIEVLPVPPLAVRPSVELGESGHSADDL 195


>gi|397135969|gb|AFO11479.1| RNA polymerase I, partial [Trigonopsis variabilis]
          Length = 871

 Score =  419 bits (1076), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/459 (48%), Positives = 289/459 (62%), Gaps = 63/459 (13%)

Query: 37  MDPKFARPDWMLV--TVLPVPPLSVRPAVVMHGSARNQEQMMNILMFLPIWDGKMPQPCI 94
           + P+  RP   +V  T+  V  ++VR   + +      ++ MNI+M++P WDG +P P +
Sbjct: 325 ISPQSNRPVMGIVQDTLCGVRKMTVRDNFIGY------QETMNIMMWVPDWDGIIPPPAV 378

Query: 95  LKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGI 154
           LKPKPLWTGKQ+ S++IP  +N+ R       DE +     ++P D  +++E+G ++ G+
Sbjct: 379 LKPKPLWTGKQILSMVIPKGINLQRF------DEGT---TLMNPKDNGMLIENGEIMFGV 429

Query: 155 LCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTY 214
           + KK++G ++G L+HI   E G  +C  F+G +QTVVN WLL                  
Sbjct: 430 VDKKTVGATAGGLVHIIMREKGPYICRDFFGGVQTVVNYWLL------------------ 471

Query: 215 LEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDV 274
                                HN       G SIGIGDTIAD  T   I   I +AK+ V
Sbjct: 472 ---------------------HN-------GFSIGIGDTIADADTMRHITKTIDEAKQQV 503

Query: 275 IEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAG 334
             +I +A +  L P PG TLR++FE++V+R LN ARD  G SA+ SL   NN+K MV+AG
Sbjct: 504 QNLINEAQHNVLAPEPGMTLRESFEHKVSRALNQARDTAGRSAEMSLKNDNNVKQMVIAG 563

Query: 335 SKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 394
           SKGS INISQ+ ACVGQQ VEGKRIPFGF+ RTLPHF KDDY PES+GF+ENSYL GLTP
Sbjct: 564 SKGSFINISQMSACVGQQIVEGKRIPFGFKDRTLPHFTKDDYSPESKGFIENSYLRGLTP 623

Query: 395 SEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGE 454
            EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E V V YD TVRNS+G +IQ  YGE
Sbjct: 624 QEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVSVEYDSTVRNSLGDIIQFIYGE 683

Query: 455 DGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
           DG+ G AVE Q +DT+  S   FE +YR D ++    L+
Sbjct: 684 DGIDGTAVEKQTVDTIPGSDAAFERRYRVDVTDRSKALK 722



 Score =  146 bits (369), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 80/102 (78%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF+ RTLPHF KDDY PES+GF+ENSYL GLTP EFFFHAM
Sbjct: 572  SQMSACVGQQIVEGKRIPFGFKDRTLPHFTKDDYSPESKGFIENSYLRGLTPQEFFFHAM 631

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   + ++ YD   +N++
Sbjct: 632  AGREGLIDTAVKTAETGYIQRRLVKALEDVSVEYDSTVRNSL 673



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 90/167 (53%), Gaps = 38/167 (22%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E V V YD TVRNS+G +IQ  YGEDG+ G AVE Q +DT+  S   FE
Sbjct: 648 GYIQRRLVKALEDVSVEYDSTVRNSLGDIIQFIYGEDGIDGTAVEKQTVDTIPGSDAAFE 707

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSG-DVISELEKEMVDHFSWKQLRRIFNEDVLRE 710
            +YR D ++  +  +         L+  G D++ ++E + V                   
Sbjct: 708 RRYRVDVTDRSKALK-------PSLLECGNDILDDIEVQKV------------------- 741

Query: 711 LMGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVI 756
                     L++E+E+L  DRE LR+ +F++G+ N  LP N+  VI
Sbjct: 742 ----------LDQEYEQLLSDREYLRKVVFTNGDYNWPLPVNIRRVI 778



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 24/132 (18%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I + P QII+PQ+NRPVMGIVQDTL  VRKMT RD F+                   
Sbjct: 314  LSQICMVPLQIISPQSNRPVMGIVQDTLCGVRKMTVRDNFIGY----------------- 356

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNT 1608
                QE +N+   +PD+D     P +L+    +   T K++    I + IN    D+  T
Sbjct: 357  ----QETMNIMMWVPDWDGIIPPPAVLK---PKPLWTGKQILSMVIPKGINLQRFDEGTT 409

Query: 1609 PLSPTDKKLTME 1620
             ++P D  + +E
Sbjct: 410  LMNPKDNGMLIE 421



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 39/55 (70%)

Query: 955  GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA 1009
            G+ +L  +A ENAT LFQCL+RS L  + V E YRL+  A +W++G+IE +F ++
Sbjct: 816  GKGKLVHEAQENATYLFQCLIRSRLAVRRVIEEYRLNRVALDWVLGDIEAQFARS 870


>gi|262303455|gb|ACY44320.1| RNA polymerase largest subunit [Phrynus marginemaculatus]
          Length = 268

 Score =  419 bits (1076), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/298 (67%), Positives = 230/298 (77%), Gaps = 46/298 (15%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +E MMN+LMFLPIWDGKMP P I+KPKPLWTGKQ+FSLIIPGNVN+ R HSTH D+ED G
Sbjct: 17  KEHMMNLLMFLPIWDGKMPMPAIVKPKPLWTGKQIFSLIIPGNVNLIRKHSTHNDEEDDG 76

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           PY+WISP DTKV++EHG L+ GI+CK ++G++SGSL+H+ F ELG+EV G FYG+IQTVV
Sbjct: 77  PYKWISPSDTKVLIEHGELISGIVCKNTVGSASGSLMHVVFAELGYEVAGAFYGHIQTVV 136

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLLLEGH+IGIGDTIADPQTY++IQ  IKKAK DVI+VI+KAHN +LEPTPG      
Sbjct: 137 NNWLLLEGHTIGIGDTIADPQTYVDIQNTIKKAKLDVIDVIEKAHNDELEPTPG------ 190

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
                                                   NTLRQTFENQVNRILNDARD
Sbjct: 191 ----------------------------------------NTLRQTFENQVNRILNDARD 210

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           KTG SA+KSL+E+NN KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 211 KTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLP 268



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 30/36 (83%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLP 1035
            G   ++   +QVIACVGQQNVEGKRIPFGFRKRTLP
Sbjct: 233  GAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLP 268


>gi|397135963|gb|AFO11476.1| RNA polymerase I, partial [Dipodascopsis uninucleata]
          Length = 871

 Score =  418 bits (1075), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/455 (49%), Positives = 285/455 (62%), Gaps = 67/455 (14%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           N +Q+MNIL ++P WDG +P P ILKPKPLWTGKQ+ S++IP  +N+ R      DD+++
Sbjct: 355 NFDQVMNILYWVPNWDGSIPHPAILKPKPLWTGKQLLSMVIPKGINLQRF-----DDKNT 409

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
                +SP D  +++E+G ++ G++ KK++G +SG L+H    E G  V   F+  +QTV
Sbjct: 410 ----LLSPRDNGMMIENGEIMYGVVDKKTVGATSGGLIHTIMREKGPTVTRDFFSGVQTV 465

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN WLL                                       HN       G SIGI
Sbjct: 466 VNYWLL---------------------------------------HN-------GFSIGI 479

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIAD +T   I   I +AK +V +VI  A    L P PG TLR++FE +V+++LN AR
Sbjct: 480 GDTIADAKTMRNITNTIAQAKREVQQVILDAQANRLPPEPGMTLRESFEQKVSKVLNTAR 539

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           D  G SA+ SLT+ NN+K MVV+GSKGS INISQ+ ACVGQQ VEGKRIPFGF  RTLPH
Sbjct: 540 DTAGRSAETSLTDMNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFSYRTLPH 599

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F KDDY PESRGF+ENSYL GLTP EFFFHAM GREG+IDTAVKTAETGYIQRRL+KA+E
Sbjct: 600 FTKDDYSPESRGFIENSYLRGLTPQEFFFHAMVGREGIIDTAVKTAETGYIQRRLVKALE 659

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
            V V YDCTVRNS+G ++Q  YGEDGL    VE Q +D+++ S+++FE +Y+ D  +   
Sbjct: 660 DVSVQYDCTVRNSLGDILQFVYGEDGLDATYVEKQSLDSMSGSNERFEQRYKIDLMDPAR 719

Query: 491 TLRNVSSLRRVVNSKPLLIGCWKLTSVEKEMNTVL 525
           TL            KP L+ C      + E   VL
Sbjct: 720 TL------------KPTLLECGNDIIGDSETQKVL 742



 Score =  143 bits (361), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF  RTLPHF KDDY PESRGF+ENSYL GLTP EFFFHAM
Sbjct: 572  SQMSACVGQQIVEGKRIPFGFSYRTLPHFTKDDYSPESRGFIENSYLRGLTPQEFFFHAM 631

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREG+IDTAVKTAET  +   L +   + ++ YD   +N++
Sbjct: 632  VGREGIIDTAVKTAETGYIQRRLVKALEDVSVQYDCTVRNSL 673



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 100/201 (49%), Gaps = 49/201 (24%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E V V YDCTVRNS+G ++Q  YGEDGL    VE Q +D+++ S+++FE
Sbjct: 648 GYIQRRLVKALEDVSVQYDCTVRNSLGDILQFVYGEDGLDATYVEKQSLDSMSGSNERFE 707

Query: 652 DKYRFDPSN-ERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRE 710
            +Y+ D  +  R L+          L    D+I + E + V                   
Sbjct: 708 QRYKIDLMDPARTLKPTL-------LECGNDIIGDSETQKV------------------- 741

Query: 711 LMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEV------IFILQRWK- 763
                     L++E+E+LC DR+ LR +F +G+    LP N+  V      IF L R K 
Sbjct: 742 ----------LDEEYEQLCADRKFLRTVFKNGDDAWPLPVNIQRVIRNSQQIFHLNRQKA 791

Query: 764 -----LWGNENLRFLCKIIFV 779
                +   E +R LC+   V
Sbjct: 792 SDLTPIEVAERVRDLCRKFIV 812



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 24/125 (19%)

Query: 1496 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPEDQEF 1555
            P QI++PQ+N+PVMGIVQDTL  +RKMTKRD FL+         +D            + 
Sbjct: 321  PLQIVSPQSNKPVMGIVQDTLCGIRKMTKRDTFLN---------FD------------QV 359

Query: 1556 VNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPTDK 1615
            +N+ Y +P++D +   P +L+    +   T K+L    I + IN    DD NT LSP D 
Sbjct: 360  MNILYWVPNWDGSIPHPAILK---PKPLWTGKQLLSMVIPKGINLQRFDDKNTLLSPRDN 416

Query: 1616 KLTME 1620
             + +E
Sbjct: 417  GMMIE 421



 Score = 67.0 bits (162), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 955  GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            G++++ ++  ENAT LFQCLVRS L  K V E YRL+  AFEW+VG+IE +F +A V
Sbjct: 815  GDNRIVQEIQENATTLFQCLVRSRLACKRVFEEYRLNRVAFEWVVGQIEAQFARAVV 871


>gi|83320436|gb|ABC02845.1| RNA polymerase II largest subunit, partial [Entomophthora muscae]
          Length = 1007

 Score =  418 bits (1075), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/420 (50%), Positives = 273/420 (65%), Gaps = 52/420 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++E + N+++++P W+G +P PCI  P PLWTGKQ+ SL+IP  +NMT  H+ HPDDE S
Sbjct: 467 SKEFVQNLVLWIPDWNGYIPPPCIQFPVPLWTGKQLLSLLIPTGINMTTFHAAHPDDEKS 526

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
               +ISPGDT+V + +G ++ GI+CK+++G ++G L+H  + ELG     RF    QT+
Sbjct: 527 ----YISPGDTRVEIVNGEIIAGIICKRTVGAAAGGLIHTIYNELGEVPTTRFLNGTQTL 582

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN W +    S                                              I I
Sbjct: 583 VNYWFMQNSFS----------------------------------------------IAI 596

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GD IAD +T  ++  +I  AK +V   I++A    L+P PG T+R+ FE++VN+ LN AR
Sbjct: 597 GDMIADRETMKKVNQSIADAKIEVARCIEEAQRGTLQPLPGLTVREAFESRVNQALNKAR 656

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           D  G  A++SL EYNN+K MVV+GSKGS +NISQ+ ACVGQQNVE  RIPFGF+ RTLPH
Sbjct: 657 DDAGKMAERSLPEYNNIKQMVVSGSKGSFVNISQMAACVGQQNVESARIPFGFQNRTLPH 716

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F K D GP SRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E
Sbjct: 717 FTKYDQGPVSRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALE 776

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRF--DPSNE 488
            VMV+YD TVRNS+GQ++Q  YGEDG+    +E QR D + LS+ +FE+KY     PS E
Sbjct: 777 DVMVNYDGTVRNSLGQIVQFCYGEDGMDAAFIEKQRFDNLRLSNLEFENKYLLTVKPSGE 836



 Score =  140 bits (353), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 77/102 (75%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVE  RIPFGF+ RTLPHF K D GP SRGFVENSYL GLTP EFFFHAM
Sbjct: 689  SQMAACVGQQNVESARIPFGFQNRTLPHFTKYDQGPVSRGFVENSYLRGLTPQEFFFHAM 748

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 749  GGREGLIDTAVKTAETGYIQRRLVKALEDVMVNYDGTVRNSL 790



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 85/169 (50%), Gaps = 38/169 (22%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV+YD TVRNS+GQ++Q  YGEDG+    +E QR D + LS+ +FE
Sbjct: 765 GYIQRRLVKALEDVMVNYDGTVRNSLGQIVQFCYGEDGMDAAFIEKQRFDNLRLSNLEFE 824

Query: 652 DKYRF--DPSNERQL-RRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVL 708
           +KY     PS E  +   +F+ D     + +G       K + D F+             
Sbjct: 825 NKYLLTVKPSGELNVDSALFDNDA---FLDAGISYLAFNKALADEFA------------- 868

Query: 709 RELMGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVI 756
                             +L  DR  LR  +F+SGE+   +P N+  +I
Sbjct: 869 ------------------QLVSDRNLLRNFVFTSGENEWPMPVNIKRLI 899



 Score = 74.3 bits (181), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 44/59 (74%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            + G D LS++AN NAT+LF+ LVRS L +K V E + L++EAFEWLV EI+NRF  AQ 
Sbjct: 935  IRGNDALSEEANTNATILFKVLVRSILASKRVLEEFHLTTEAFEWLVAEIQNRFNLAQA 993



 Score = 60.8 bits (146), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 21/104 (20%)

Query: 1497 RQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV-------- 1548
            +QI++PQ N+PVMGIVQD+L  VRK TKRD FL K      + + PD    +        
Sbjct: 434  KQIVSPQGNKPVMGIVQDSLCGVRKFTKRDCFLSKEFVQNLVLWIPDWNGYIPPPCIQFP 493

Query: 1549 -------------IPEDQEFVNVYYEMPDFDPTRISPWLLRIEL 1579
                         IP        +   PD + + ISP   R+E+
Sbjct: 494  VPLWTGKQLLSLLIPTGINMTTFHAAHPDDEKSYISPGDTRVEI 537



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 34/46 (73%)

Query: 34  ILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           I+G+  +FARP+WM+++ LPVPP  VRP++V+ G  R ++ + + L
Sbjct: 146 IMGLSAQFARPEWMVLSNLPVPPPCVRPSIVVPGMGRGEDDLTHKL 191


>gi|397135942|gb|AFO11466.1| RNA polymerase I, partial [Trichomonascus petasosporus]
          Length = 873

 Score =  417 bits (1073), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/412 (51%), Positives = 262/412 (63%), Gaps = 53/412 (12%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MNIL ++P WDG +P P IL+PKPLWTGKQ+ S+ IP  + + R  S        G 
Sbjct: 357 DQVMNILFWIPSWDGNVPTPTILRPKPLWTGKQIISMCIPNGIYLQRLDS-------EGG 409

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
             WISP DT +++  G ++ G + KK++G +SG L+H    E G +V   F+G +Q VVN
Sbjct: 410 SAWISPKDTGMLISKGEIMFGAVDKKTVGATSGGLVHTIMREKGPQVACNFFGEVQKVVN 469

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN         SIGIGD
Sbjct: 470 YWLL---------------------------------------HN-------SFSIGIGD 483

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T  ++   I  AK +V ++I K  + DL P PG TLR+TFE   ++  N ARD 
Sbjct: 484 TIADATTMSQVYDHIATAKAEVQKLILKVQSNDLSPDPGMTLRETFEAHASKAFNQARDD 543

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+KSL E NN+K MVV+GSKGS INISQ+ ACVGQQ VEGKRIPFGF+ RTLPHF 
Sbjct: 544 AGKSAEKSLKELNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFQDRTLPHFT 603

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDD+  ESRGF+ENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E V
Sbjct: 604 KDDFSGESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDV 663

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           MVHYD T RNS+G +IQ  YGEDGL G  VE Q +DT++ S  +FE +YR D
Sbjct: 664 MVHYDGTARNSLGDIIQFLYGEDGLDGTQVEKQNVDTMSGSMAQFERRYRID 715



 Score =  143 bits (360), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF+ RTLPHF KDD+  ESRGF+ENSYL GLTP EFFFHAM
Sbjct: 574  SQMSACVGQQIVEGKRIPFGFQDRTLPHFTKDDFSGESRGFIENSYLRGLTPQEFFFHAM 633

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 634  AGREGLIDTAVKTAETGYIQRRLVKALEDVMVHYDGTARNSL 675



 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 89/167 (53%), Gaps = 35/167 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMVHYD T RNS+G +IQ  YGEDGL G  VE Q +DT++ S  +FE
Sbjct: 650 GYIQRRLVKALEDVMVHYDGTARNSLGDIIQFLYGEDGLDGTQVEKQNVDTMSGSMAQFE 709

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YR D                  LM S  V   L+ ++++  +              E+
Sbjct: 710 RRYRID------------------LMDSHGV-KALKSQLLESGA--------------EI 736

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSG--ESNVVLPCNLMEVI 756
           MG  D    L++E+++L EDR  LR     G  ES+  LP NL  VI
Sbjct: 737 MGDLDTQRLLDEEYDQLLEDRNFLRHKVFPGNDESSWPLPVNLRRVI 783



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 39/56 (69%)

Query: 951  PSVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRF 1006
            P V GE  +  +A ENAT LF+ LVRS L TK + E YRL+  AF+W++GE+ ++F
Sbjct: 817  PVVRGEGDVLTEAQENATYLFKALVRSRLATKRIIEEYRLNKIAFDWVLGEVRSQF 872



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 21/83 (25%)

Query: 1494 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPEDQ 1553
            + P QI++PQ+N+PVMGIVQDTL  +RKM+KRD FL                     E  
Sbjct: 319  MVPLQIVSPQSNKPVMGIVQDTLCGIRKMSKRDNFL---------------------EFD 357

Query: 1554 EFVNVYYEMPDFDPTRISPWLLR 1576
            + +N+ + +P +D    +P +LR
Sbjct: 358  QVMNILFWIPSWDGNVPTPTILR 380


>gi|113957551|gb|ABI49122.1| RNA polymerase II largest subunit [Pleopsidium gobiense]
          Length = 1017

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/414 (51%), Positives = 266/414 (64%), Gaps = 58/414 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MNIL+++P WDG +PQP ILKP+P WTGKQ+ SL+IP  +N+ R           G
Sbjct: 481 KEQVMNILLWVPDWDGVIPQPAILKPRPTWTGKQIVSLVIPKGLNLIR-----------G 529

Query: 132 PYQWISPG-DTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
             + +SP  D  + V  G L+ G+  KKS+G S G ++HI F E G EV   F+   QTV
Sbjct: 530 SEEGLSPANDDGLFVHGGELMYGLFSKKSVGASGGGIIHIIFNEKGPEVAMNFFNGAQTV 589

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN WLL                                       HN       G SIGI
Sbjct: 590 VNYWLL---------------------------------------HN-------GFSIGI 603

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTI D  T  +I+ A+ + K DV E+ + A   +LEP PG  +R+TFE++V++ LN AR
Sbjct: 604 GDTIPDRNTIRQIENAVNRQKADVAEITRSATENELEPLPGMNVRETFESKVSKALNAAR 663

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           D+ G   +KSL + NN   M  +GSKGS INISQ+ A VGQQ+VEGKRIPFGF+ RTLPH
Sbjct: 664 DEAGAETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH 723

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E
Sbjct: 724 FTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALE 783

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            VM  YD TVRNS+G ++Q  YGEDGL G  +E QR+DT+A S K+FE K+R D
Sbjct: 784 DVMAKYDGTVRNSLGDIVQFVYGEDGLDGSHIEAQRVDTIACSDKQFEKKFRVD 837



 Score =  143 bits (361), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ A VGQQ+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM
Sbjct: 696  SQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 755

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +    YD   +N++
Sbjct: 756  AGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSL 797



 Score = 96.3 bits (238), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 84/165 (50%), Gaps = 35/165 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VM  YD TVRNS+G ++Q  YGEDGL G  +E QR+DT+A S K+FE
Sbjct: 772 GYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGSHIEAQRVDTIACSDKQFE 831

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+R D  + +        DVL                                ++  ++
Sbjct: 832 KKFRVDLMDPKAG---IAPDVL--------------------------------ELAADI 856

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
            G  +V   L++EWE+L  DR  LR+        + LP N++ ++
Sbjct: 857 AGDVEVQQYLDEEWEQLKLDRAFLRKNKQDDTEQMQLPINILRIL 901



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 42/59 (71%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+D+LSK+A +NATLLF+  +RS L  K V   Y L+  AF+ ++GEIE+RF +A V
Sbjct: 937  VRGDDKLSKEAQDNATLLFKAHLRSRLAFKRVVTEYSLNKLAFQHVLGEIESRFCRAAV 995



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  + + P  I++PQ N P+MGIVQDTL  + KM +RDVFL K      + + PD  + V
Sbjct: 439  INQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPD-WDGV 497

Query: 1549 IPE 1551
            IP+
Sbjct: 498  IPQ 500


>gi|397135938|gb|AFO11464.1| RNA polymerase I, partial [Candida tepae]
          Length = 872

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/412 (51%), Positives = 265/412 (64%), Gaps = 55/412 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MNIL ++P WDG +PQP ILKPKPLWTGKQ+ SL IP  + M R    +P       
Sbjct: 357 DQVMNILFWIPDWDGVVPQPAILKPKPLWTGKQMVSLCIPKGIFMQRFDDQNP------- 409

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
               SP D  +++  G ++ G++ KK++G ++G L+H    E G ++C  F+GN+Q V+N
Sbjct: 410 --ITSPKDNGMLIAKGEIIYGVVDKKTVGATAGGLIHTIMREKGPQICCNFFGNLQKVIN 467

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 468 YWLL---------------------------------------HN-------GFSIGIGD 481

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T  +I   I +AK  V E+I +A    L P PG TLR++FE+ V+R+LN ARD 
Sbjct: 482 TIADAATMKDITNTIAEAKNKVQEIIFEAQMNKLAPEPGMTLRESFEHNVSRVLNQARDT 541

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ SL E NN+K MV+AGSKGS INISQ+ ACVGQQ VEGKRIPFGF+ R+LPHF 
Sbjct: 542 AGRSAEMSLKELNNVKQMVIAGSKGSFINISQMSACVGQQIVEGKRIPFGFQDRSLPHFT 601

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDD+ PES+GF+ENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E V
Sbjct: 602 KDDHSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDV 661

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           MV YD T RNS+G +IQ  YGEDGL G  VE Q +DT+  S + FE +YR D
Sbjct: 662 MVQYDGTTRNSLGDVIQFVYGEDGLDGTQVEKQTVDTIPGSDEAFEKRYRID 713



 Score =  142 bits (357), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF+ R+LPHF KDD+ PES+GF+ENSYL GLTP EFFFHAM
Sbjct: 572  SQMSACVGQQIVEGKRIPFGFQDRSLPHFTKDDHSPESKGFIENSYLRGLTPQEFFFHAM 631

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 632  AGREGLIDTAVKTAETGYIQRRLVKALEDVMVQYDGTTRNSL 673



 Score = 97.1 bits (240), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 88/166 (53%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD T RNS+G +IQ  YGEDGL G  VE Q +DT+  S + FE
Sbjct: 648 GYIQRRLVKALEDVMVQYDGTTRNSLGDVIQFVYGEDGLDGTQVEKQTVDTIPGSDEAFE 707

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YR D                  LM   DV   ++   ++  +              E+
Sbjct: 708 KRYRID------------------LM---DVAKSIKTNYLESGN--------------EI 732

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVI 756
           +G   +   L++E+++L +DR  LR  +F++G+ N  LP NL  ++
Sbjct: 733 LGDVALQKILDEEYDQLLDDRSFLRSFVFTNGDHNWPLPVNLRRIV 778



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 43/59 (72%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V GE +L+K+A  NA+ LFQCLVRS L  K V E ++L+  AFEW +GEIE++F ++ V
Sbjct: 814  VRGEGRLTKEAQANASYLFQCLVRSRLACKRVIEEFKLNRIAFEWALGEIESQFAKSIV 872



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 24/124 (19%)

Query: 1494 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPEDQ 1553
            + P QII+PQ+N+PVMGIVQDTL  +RK+TKRD F+                     E  
Sbjct: 319  MVPLQIISPQSNKPVMGIVQDTLCGIRKLTKRDTFV---------------------EFD 357

Query: 1554 EFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPT 1613
            + +N+ + +PD+D     P +L+    +   T K++    I + I     DD N   SP 
Sbjct: 358  QVMNILFWIPDWDGVVPQPAILK---PKPLWTGKQMVSLCIPKGIFMQRFDDQNPITSPK 414

Query: 1614 DKKL 1617
            D  +
Sbjct: 415  DNGM 418


>gi|397135944|gb|AFO11467.1| RNA polymerase I, partial [Sugiyamaella smithiae]
          Length = 868

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/412 (52%), Positives = 264/412 (64%), Gaps = 55/412 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           EQ+MNIL ++P WDG++P P I KPKP+WTGKQ+ SL IP  + + R    +P       
Sbjct: 357 EQVMNILFWVPNWDGRIPPPAIWKPKPMWTGKQMVSLCIPDGIFLQRFDDGNP------- 409

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              ISP D  +++  G ++ G++ KK++G + G L+H    E G +V   F+GNIQ VVN
Sbjct: 410 --LISPKDNGMLISRGEIIYGVVDKKTVGATGGGLIHTIMREKGPKVAAGFFGNIQKVVN 467

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 468 YWLL---------------------------------------HN-------GFSIGIGD 481

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T  +I   I +AK+ V ++I  A N  L P PG TLR++FE+ V+R+LN ARD 
Sbjct: 482 TIADGSTMRDIANTIAEAKQKVQDIIADAQNNTLSPEPGMTLRESFEHNVSRVLNQARDN 541

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ SL + NN+K MVV+GSKGS INISQ++ACVGQQ VEGKRIPFGF  R+LPHF 
Sbjct: 542 AGRSAELSLKDLNNVKQMVVSGSKGSFINISQMMACVGQQIVEGKRIPFGFADRSLPHFT 601

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 602 KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 661

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           MV YD T RNS+G +IQ  YGEDGL G  VE Q IDT+  S + FE +YR D
Sbjct: 662 MVQYDGTTRNSLGDVIQFIYGEDGLDGTQVEKQTIDTIPGSDEAFERRYRID 713



 Score =  144 bits (363), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q++ACVGQQ VEGKRIPFGF  R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 572  SQMMACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 632  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVQYDGTTRNSL 673



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 88/169 (52%), Gaps = 40/169 (23%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MV YD T RNS+G +IQ  YGEDGL G  VE Q IDT+  S + FE
Sbjct: 648 GYIQRRLVKALEDIMVQYDGTTRNSLGDVIQFIYGEDGLDGTQVEKQTIDTIPGSDEAFE 707

Query: 652 DKYRF---DPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVL 708
            +YR    DPS        F   +   L+ SG+                           
Sbjct: 708 RRYRIDVMDPS--------FARSIKPSLLESGN--------------------------- 732

Query: 709 RELMGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVI 756
            E++G  ++   L+ E+ +L +DR  LR+ +F++G+ N  LP NL  VI
Sbjct: 733 -EILGDLEIQRVLDIEFNQLLDDRNHLRQFVFTNGDHNWPLPVNLXRVI 780



 Score = 60.5 bits (145), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 38/57 (66%)

Query: 1494 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIP 1550
              P QI++PQ+N+PVMGIVQDTL  +RKM+KRD F+D       +++ P+    + P
Sbjct: 319  AVPLQIVSPQSNKPVMGIVQDTLCGIRKMSKRDSFIDYEQVMNILFWVPNWDGRIPP 375



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 34/51 (66%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIE 1003
            + G+  L ++A  NA  LF  LVRS L +K + E +RL+  AFEW++GE++
Sbjct: 816  IRGKGSLVEEAQNNAXYLFSTLVRSRLASKRIXEEFRLNRTAFEWVIGEVK 866


>gi|18736|emb|CAA36736.1| DNA-directed RNA polymerase [Glycine max]
          Length = 977

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/505 (47%), Positives = 316/505 (62%), Gaps = 32/505 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V GED LS++A +NATLLF  L+RST  +K V E YRLS E+FEW+VGEIE+RF Q+ V+
Sbjct: 211  VPGEDALSQEAQKNATLLFNILLRSTFASKRVLEEYRLSRESFEWVVGEIESRFLQSLVV 270

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLP--HFIKDDYG------PESRGFVENSYLAGLTPSEFF 1064
                   V  + I     + TL   HF            P  R  + N   +  TPS   
Sbjct: 271  PGEMIGVVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLRELI-NVAKSIKTPSLSV 329

Query: 1065 FHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEM 1124
            +  +    G      KT +       L  VT  T ++YDPDP +T+I ED +FV  YYEM
Sbjct: 330  Y--LKPDAGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVMSYYEM 387

Query: 1125 PDFDPT--RISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1182
            PD +    +ISPW +R+EL+R+ M DKKL+M  I++KIN  F DDL+CIFNDDNAEKL+L
Sbjct: 388  PDEEVALEKISPWFVRVELNREMMVDKKLSMADIAQKINLEFDDDLSCIFNDDNAEKLIL 447

Query: 1183 RIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD 1240
            RIRIMN D  K  +QDE       EDD+FL+ IE NML++MTL+GI  I KV++      
Sbjct: 448  RIRIMNDDAPKGEVQDE-----SAEDDVFLKKIETNMLTEMTLRGIPDINKVFIK----- 497

Query: 1241 SKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVR 1300
            + K     E+  FK+  +W+L+T+G +L+ V+   DVD  RT SN + E+ +VLGIEAVR
Sbjct: 498  NAKVQKFDENEGFKSNGEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVR 557

Query: 1301 KSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1360
            +S+  E+  V+ F G YVNYRHLA+LC+ MT +GHLMAITRHGINR DTG +MRCSFEET
Sbjct: 558  RSLLDELRIVISFDGSYVNYRHLAILCETMTYRGHLMAITRHGINRNDTGPMMRCSFEET 617

Query: 1361 VDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT----- 1415
            VD+L+DAAA+AE D +RGV+ENII+GQL  +GTG   L L+    K+ IE+ L +     
Sbjct: 618  VDILLDAAAYAETDSLRGVTENIILGQLAPIGTGQCALYLNDGMLKNAIELQLPSYTDGL 677

Query: 1416 --GMMGGPAGMFFGSAATPSSIPGP 1438
              G+M G      G+  +PS +  P
Sbjct: 678  DFGIMSGATPYHEGTMMSPSYLLSP 702



 Score =  167 bits (422), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 93/187 (49%), Positives = 121/187 (64%), Gaps = 14/187 (7%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           L ++I VL   +VR+S+  E+  V+ F G YVNYRHLA+LC+ MT +GHLMAITRHGINR
Sbjct: 544 LIEVIEVLGIEAVRRSLLDELRIVISFDGSYVNYRHLAILCETMTYRGHLMAITRHGINR 603

Query: 830 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            DTG +MRCSFEETVD+L+DAAA+AE D +RGV+ENII+GQL  +GTG   L L+    K
Sbjct: 604 NDTGPMMRCSFEETVDILLDAAAYAETDSLRGVTENIILGQLAPIGTGQCALYLNDGMLK 663

Query: 890 DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPG- 948
           + IE+ L +   G   G+  G  ATP      M+P        + L+SP   ++P     
Sbjct: 664 NAIELQLPSYTDGLDFGIMSG--ATPYHEGTMMSP--------SYLLSPNLRLSPSSDAQ 713

Query: 949 FSPSVAG 955
           FSP V G
Sbjct: 714 FSPYVGG 720



 Score =  166 bits (421), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/118 (65%), Positives = 94/118 (79%), Gaps = 2/118 (1%)

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D+GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +M+
Sbjct: 1   DHGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIML 60

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNERP 490
            YD TVRNS+G +IQ  YGEDG+    +E Q++DT+ +   +F+   +Y FD  N +P
Sbjct: 61  KYDGTVRNSLGDVIQFLYGEDGMDAIWIETQKLDTLKMKKTEFDRVFRYEFDEENWKP 118



 Score =  126 bits (317), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 92/156 (58%), Gaps = 37/156 (23%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPT--RISPWLLRIELDRKRMTD 1586
            L  VT  T ++YDPDP +T+I ED +FV  YYEMPD +    +ISPW +R+EL+R+ M D
Sbjct: 354  LRSVTQATEVWYDPDPMSTIIEEDVDFVMSYYEMPDEEVALEKISPWFVRVELNREMMVD 413

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I++KIN  F DDL+CIFNDDNAEKL
Sbjct: 414  KKLS----------------------------MADIAQKINLEFDDDLSCIFNDDNAEKL 445

Query: 1647 VLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIE 1680
            +LRIRIMN D  K  +QDE       EDD+FL+ IE
Sbjct: 446  ILRIRIMNDDAPKGEVQDE-----SAEDDVFLKKIE 476



 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/123 (49%), Positives = 79/123 (64%), Gaps = 12/123 (9%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
           S+  E+  V+ F G YVNYRHLA+LC+ MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 559 SLLDELRIVISFDGSYVNYRHLAILCETMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 618

Query: 576 DVLMDAAAHAEADPMRGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAV 635
           D+L+DAAA+AE D +RG  +  ++  +  +            GQ     Y  DG+   A+
Sbjct: 619 DILLDAAAYAETDSLRGVTENIILGQLAPI----------GTGQCA--LYLNDGMLKNAI 666

Query: 636 EHQ 638
           E Q
Sbjct: 667 ELQ 669



 Score = 91.7 bits (226), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/70 (62%), Positives = 53/70 (75%)

Query: 1041 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAI 1100
            D+GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ET  +   L +   +  +
Sbjct: 1    DHGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIML 60

Query: 1101 YYDPDPQNTV 1110
             YD   +N++
Sbjct: 61   KYDGTVRNSL 70



 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +M+ YD TVRNS+G +IQ  YGEDG+    +E Q++DT+ +   +F+
Sbjct: 45  GYIQRRLVKAMEDIMLKYDGTVRNSLGDVIQFLYGEDGMDAIWIETQKLDTLKMKKTEFD 104

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +R++          F+E+  +           L++ + D  + ++ R +F        
Sbjct: 105 RVFRYE----------FDEENWKPNY-------MLQEPVEDLKTIREFRNVF-------- 139

Query: 712 MGSGDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVIFILQR 761
                     E E +KL  DR  L  EI S+G++++ LP NL  +I+  Q+
Sbjct: 140 ----------EAEVQKLEADRHQLAIEIASNGDNSLPLPVNLKRLIWNAQK 180


>gi|397135924|gb|AFO11457.1| RNA polymerase I, partial [Peterozyma toletana]
          Length = 870

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/421 (50%), Positives = 269/421 (63%), Gaps = 55/421 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +++MNIL ++P WDG +P+P I+KPKPLWTGKQ+ S++IP  +N+ R       DE    
Sbjct: 355 DEVMNILYWIPSWDGVIPEPTIVKPKPLWTGKQMLSMVIPKGINLERK------DEK--- 405

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
           + ++S  DT +++  G +++G++ KK++G + G L+H  F E G +VC   +GN+Q VVN
Sbjct: 406 FTYLSNDDTGMLIVDGEIMLGVVNKKTVGATGGGLIHAVFREKGPQVCADLFGNMQKVVN 465

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL   H                                            G SIGIGD
Sbjct: 466 YWLL---HY-------------------------------------------GFSIGIGD 479

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T   I   I  AKE V E+I KA   +L P PG TLR++FE  V+++LN ARD 
Sbjct: 480 TIADAPTVKSITHTIVTAKEKVHEIILKAQRNELPPEPGMTLRESFEQSVSQVLNQARDD 539

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G +   +L ++NN+K MV AGSKGSNINISQ+ ACVGQQ VEGKRIPFGF  R+LPHF 
Sbjct: 540 VGKATADALQDWNNVKQMVSAGSKGSNINISQMSACVGQQIVEGKRIPFGFADRSLPHFT 599

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PESRGFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 600 KDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 659

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MVHYD T RNS+G ++Q  YGEDGL    VE Q IDT+  +   F ++YR D   E  +L
Sbjct: 660 MVHYDGTARNSLGNVLQFVYGEDGLDATQVEKQSIDTIPGTDFAFANRYRIDVMEEEHSL 719

Query: 493 R 493
           R
Sbjct: 720 R 720



 Score =  145 bits (367), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF  R+LPHF KDDY PESRGFVENSYL GLTP EFFFHAM
Sbjct: 570  SQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAM 629

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 630  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTARNSL 671



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 83/166 (50%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G ++Q  YGEDGL    VE Q IDT+  +   F 
Sbjct: 646 GYIQRRLVKALEDIMVHYDGTARNSLGNVLQFVYGEDGLDATQVEKQSIDTIPGTDFAFA 705

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           ++YR D   E                        L  E++++ S              E+
Sbjct: 706 NRYRIDVMEEEH---------------------SLRPELIENGS--------------EI 730

Query: 712 MGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEVI 756
           +G   +   L++E+ +L  DR  LR++ F +G+    LP N+  VI
Sbjct: 731 LGDIALQKVLDREYNQLLSDRRYLRDVCFQNGDFQWPLPVNIRRVI 776



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 42/57 (73%)

Query: 955  GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            GE +L +Q+  +ATLLFQCLVRS L  + V E ++LS  AFEW++ EIE +FQ++ V
Sbjct: 814  GEGKLYEQSQADATLLFQCLVRSRLAARRVIEEFKLSKSAFEWVLSEIEAQFQKSIV 870



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   P QII+PQ+N+PVMGIVQDTL  VRKMT RDVF++       +Y+ P   + V
Sbjct: 312  LSQICAVPLQIISPQSNKPVMGIVQDTLCGVRKMTLRDVFIEYDEVMNILYWIPS-WDGV 370

Query: 1549 IPE 1551
            IPE
Sbjct: 371  IPE 373



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 32/46 (69%)

Query: 30 EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
          E+   LG    +ARP+WM++TVLPVPP +VRP+V +  + R ++ +
Sbjct: 28 EDCYKLGFSEDYARPEWMIITVLPVPPPAVRPSVQVTDTTRGEDDL 73


>gi|194460470|gb|ACF71909.1| RNA polymerase II [Eufriesea lucifera]
          Length = 222

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/268 (76%), Positives = 215/268 (80%), Gaps = 46/268 (17%)

Query: 87  GKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVE 146
           G MPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VE
Sbjct: 1   GXMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVE 60

Query: 147 HGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGD 206
           HG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGIGD
Sbjct: 61  HGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGD 120

Query: 207 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMA 266
           TIADPQTYLEIQ AIKKAKEDVIEVIQKAHNM+LEPTPG                     
Sbjct: 121 TIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG--------------------- 159

Query: 267 IKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNN 326
                                    NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNN
Sbjct: 160 -------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNN 194

Query: 327 LKAMVVAGSKGSNINISQVIACVGQQNV 354
           LKAMV +GSKGSNINISQVIACVGQQNV
Sbjct: 195 LKAMVXSGSKGSNINISQVIACVGQQNV 222


>gi|194460480|gb|ACF71914.1| RNA polymerase II [Euglossa modestior]
          Length = 227

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/273 (76%), Positives = 219/273 (80%), Gaps = 46/273 (16%)

Query: 136 ISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWL 195
           ISPGDT V+VEHG L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWL
Sbjct: 1   ISPGDTXVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWL 60

Query: 196 LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIA 255
           LLEG                                              HSIGIGDTIA
Sbjct: 61  LLEG----------------------------------------------HSIGIGDTIA 74

Query: 256 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG 315
           DPQTYLEIQ AIKKAKEDV+EVIQKAHNM+LEPTPGNTLRQTFENQVN+ILNDARDKTGG
Sbjct: 75  DPQTYLEIQKAIKKAKEDVLEVIQKAHNMELEPTPGNTLRQTFENQVNKILNDARDKTGG 134

Query: 316 SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD 375
           SAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRI FGF  +TLPHFIKDD
Sbjct: 135 SAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRILFGFPXKTLPHFIKDD 194

Query: 376 YGPESRGFVENSYLAGLTPSEFFFHAMGGREGL 408
           YGPESRGFVENSYLAGLTPSEF+F AMGGREGL
Sbjct: 195 YGPESRGFVENSYLAGLTPSEFYFPAMGGREGL 227



 Score =  130 bits (326), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 59/66 (89%), Positives = 62/66 (93%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +QVIACVGQQNVEGKRI FGF  +TLPHFIKDDYGPESRGFVENSYLAGLTPSEF+F AM
Sbjct: 162  SQVIACVGQQNVEGKRILFGFPXKTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFPAM 221

Query: 1069 GGREGL 1074
            GGREGL
Sbjct: 222  GGREGL 227


>gi|336041419|gb|AEH95287.1| RNA polymerase II largest subunit [Malawimonas jakobiformis]
          Length = 1042

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/405 (53%), Positives = 263/405 (64%), Gaps = 55/405 (13%)

Query: 77  NILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWI 136
           N LM+LP WDG +P+P ILKPK LWTGKQVFSLI+P  VN+ R     PD ED+  +   
Sbjct: 484 NTLMWLPSWDGHVPKPAILKPKQLWTGKQVFSLIVP-PVNVLRKSIGAPDKEDNDDF--- 539

Query: 137 SPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLL 196
           +  DTKV +E G +L GI+CK ++G +SGSL+HI + ELGHE    F  ++QTV+N WL+
Sbjct: 540 TASDTKVRIEQGEVLSGIVCKNTVGNASGSLVHIIWNELGHEATRNFLDSVQTVINYWLM 599

Query: 197 LEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIAD 256
                                                           G SIGIGDTIAD
Sbjct: 600 ----------------------------------------------NRGFSIGIGDTIAD 613

Query: 257 PQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGS 316
           P T   I   I ++K++V ++I + H   LE TPG TL +TFE +VN  LN ARD+ G +
Sbjct: 614 PATMQNITKIIGRSKQEVSDLITQLHEGKLEATPGRTLMETFEMKVNTALNKARDEAGKA 673

Query: 317 AKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDY 376
           A  SL   N  K MV AGSKGSNINI+Q+IACVGQQNVEGKRIP+GFR RTLPHF+ +D 
Sbjct: 674 AVGSLRATNAAKEMVTAGSKGSNINIAQMIACVGQQNVEGKRIPYGFRNRTLPHFVTNDM 733

Query: 377 GPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHY 436
            PESRGFVENSYL GL P EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME VMV Y
Sbjct: 734 TPESRGFVENSYLRGLNPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLMKAMEDVMVKY 793

Query: 437 DCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKY 481
           D TVRNSVG+++Q  YGEDG  G A+E Q +D     H   +D+Y
Sbjct: 794 DGTVRNSVGEVVQFLYGEDGFDGTAIEFQMLD-----HMFMDDEY 833



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/129 (59%), Positives = 89/129 (68%), Gaps = 4/129 (3%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            AQ+IACVGQQNVEGKRIP+GFR RTLPHF+ +D  PESRGFVENSYL GL P EFFFHAM
Sbjct: 700  AQMIACVGQQNVEGKRIPYGFRNRTLPHFVTNDMTPESRGFVENSYLRGLNPQEFFFHAM 759

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N+V     E V   Y    FD
Sbjct: 760  GGREGLIDTAVKTSETGYIQRRLMKAMEDVMVKYDGTVRNSV----GEVVQFLYGEDGFD 815

Query: 1129 PTRISPWLL 1137
             T I   +L
Sbjct: 816  GTAIEFQML 824



 Score = 89.0 bits (219), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 95/181 (52%), Gaps = 37/181 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME VMV YD TVRNSVG+++Q  YGEDG  G A+E Q +D     H   +
Sbjct: 776 GYIQRRLMKAMEDVMVKYDGTVRNSVGEVVQFLYGEDGFDGTAIEFQMLD-----HMFMD 830

Query: 652 DKY----RFDPSNE------RQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRR 701
           D+Y    RF  S+        ++R+ +  DV          + +   +  +H+       
Sbjct: 831 DEYARSLRFLISSLTVYSVCSRMRKAYRIDVR---------VGQRGADAPEHY------- 874

Query: 702 IFNEDVLRELMGSGDVISELEKEWEKLCEDREALR-EIFSSG----ESNVVLPCNLMEVI 756
               DVL +L  + + ++ LE+E+ +L +DR  LR E+FS      +    +P NL  +I
Sbjct: 875 -MQPDVLEDLRSNAEHMAALEREFARLVKDRXLLRSEVFSQSLRPNQDRWPMPGNLKRII 933

Query: 757 F 757
           +
Sbjct: 934 W 934



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 42/61 (68%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D ++++A ENATLLF  LVRS L  K V   Y+L+  +FEW++GEIE+RF+  +  
Sbjct: 970  VPGTDFIAQEAQENATLLFGILVRSELAAKRVLTEYKLNKRSFEWVLGEIEHRFKAGRAA 1029

Query: 1013 A 1013
            A
Sbjct: 1030 A 1030



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
            +E + + PR I++PQ N+PVMGIVQD+L   +  TKRD FL++   N  + + P
Sbjct: 437  LEELMMVPRNIVSPQANKPVMGIVQDSLLGTKLFTKRDTFLERDLVNNTLMWLP 490


>gi|397135854|gb|AFO11422.1| RNA polymerase I, partial [Candida abiesophila]
          Length = 870

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/421 (50%), Positives = 269/421 (63%), Gaps = 57/421 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MN+  ++P WDG +PQPCI KPKPLW+GKQV SL I   + + R   +         
Sbjct: 357 DQVMNMCYWIPDWDGIVPQPCIFKPKPLWSGKQVLSLCISKGIFLQRLDGS--------- 407

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              +SP D+ +++ +G ++ G++ K ++G S+G L+H    E G  VC + +GNIQ VVN
Sbjct: 408 --MLSPKDSGMLILNGEIMFGVVNKATVGPSAGGLIHTTMREKGSTVCAKMFGNIQKVVN 465

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 466 YWLL---------------------------------------HN-------GFSIGIGD 479

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
            IADP+T   I   I++AKE V  VI+ A    LEP PG T+R++FE +V++ILN+ARD 
Sbjct: 480 AIADPETMKTITETIREAKEKVQNVIKDAQANLLEPEPGMTIRESFEQKVSKILNEARDS 539

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ SL + NN+K MV AGSKGS INISQ+ ACVGQQ VEG+RI FGF  RTLPHF 
Sbjct: 540 AGKSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGRRIHFGFADRTLPHFT 599

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY  ES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 600 KDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDI 659

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MVHYD T RNS+G +IQ  YGEDGL    VE Q IDT+  S+ +FE KYR D  +E+ ++
Sbjct: 660 MVHYDGTTRNSLGDVIQFLYGEDGLDATTVEKQTIDTIPGSNAEFEKKYRVDLMDEKKSI 719

Query: 493 R 493
           R
Sbjct: 720 R 720



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 77/102 (75%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEG+RI FGF  RTLPHF KDDY  ES+GFVENSYL GLTP EFFFHAM
Sbjct: 570  SQMSACVGQQIVEGRRIHFGFADRTLPHFTKDDYSAESKGFVENSYLRGLTPQEFFFHAM 629

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 630  AGREGLIDTAVKTAETGYIQRRLLKALEDIMVHYDGTTRNSL 671



 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 92/166 (55%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G +IQ  YGEDGL    VE Q IDT+  S+ +FE
Sbjct: 646 GYIQRRLLKALEDIMVHYDGTTRNSLGDVIQFLYGEDGLDATTVEKQTIDTIPGSNAEFE 705

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KYR D  +E++  R        +L+ SG                             E+
Sbjct: 706 KKYRVDLMDEKKSIRT-------DLIXSGS----------------------------EI 730

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVI 756
           +G  ++   L++E+++L +DRE LR  +F +G++N  LP N+  VI
Sbjct: 731 LGDIELQKILDEEYDQLLKDREYLRTVVFPNGDNNWPLPVNIRRVI 776



 Score = 67.8 bits (164), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 44/59 (74%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+ ++ ++A  NATLLF+CLVRS L T+ V E +RL+ +AFEW+VG IE +F ++ V
Sbjct: 812  VRGKGEIMEEAQSNATLLFECLVRSRLATRRVLEEFRLNKDAFEWVVGTIEQQFARSLV 870



 Score = 60.5 bits (145), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   P QI++PQ+N+PVMGIVQDTL  VRKMT RD F++        Y+ PD  + +
Sbjct: 314  LSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTXRDNFIEYDQVMNMCYWIPD-WDGI 372

Query: 1549 IPE 1551
            +P+
Sbjct: 373  VPQ 375


>gi|347728918|gb|AEP20109.1| RNA polymerase II largest subunit [Lecidea auriculata]
          Length = 495

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/419 (50%), Positives = 268/419 (63%), Gaps = 56/419 (13%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ MNIL+++P WDG +PQP ILKP+P WTGKQ+ SL++P  +N+TR       DE   
Sbjct: 24  KEQAMNILLWVPDWDGVIPQPAILKPRPKWTGKQIISLVVPPGLNLTRVS-----DEGLS 78

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           P       D  ++V  G L+ G+  KKS+G +SG ++HI F E G E    F+   QTVV
Sbjct: 79  PIN-----DDGLMVSGGELVYGLFSKKSVGAASGGVIHIIFNEKGPEAAMNFFNGAQTVV 133

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N+WLL                                       HN       G SIGIG
Sbjct: 134 NHWLL---------------------------------------HN-------GFSIGIG 147

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTI D  T  +I+ A+ K K+DV E+ + A   +LEP PG  +R+TFE++V++ LN ARD
Sbjct: 148 DTIPDRNTIQQIEDAVSKQKDDVAEITRSATENELEPLPGMNVRETFESKVSKALNKARD 207

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G   ++SL + NN   M  +GSKGS INISQ+ A VGQQ+VEGKRIPFGF+ RTLPHF
Sbjct: 208 DAGTVTEESLKDLNNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHF 267

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E 
Sbjct: 268 TKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALED 327

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           VM  YD TVRNS+G ++Q  YGEDGL G  +E Q++D +  SH++FE K+R D  + RP
Sbjct: 328 VMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIEPQKLDIITCSHEQFEKKFRVDLMDPRP 386



 Score =  146 bits (369), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/159 (49%), Positives = 96/159 (60%), Gaps = 4/159 (2%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ A VGQQ+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM
Sbjct: 239  SQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 298

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
             GREGLIDTAVKTAET  +   L +   +    YD   +N++     + V   Y     D
Sbjct: 299  AGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSL----GDIVQFVYGEDGLD 354

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
               I P  L I        +KK  ++ +  +  A    D
Sbjct: 355  GVHIEPQKLDIITCSHEQFEKKFRVDLMDPRPEASISPD 393



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 33/165 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VM  YD TVRNS+G ++Q  YGEDGL G  +E Q++D +  SH++FE
Sbjct: 315 GYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIEPQKLDIITCSHEQFE 374

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+R D  + R    I           S D + +                        E+
Sbjct: 375 KKFRVDLMDPRPEASI-----------SPDYLEQ----------------------ANEI 401

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
            G  +V + L++E+E+L   R+ LR+        + LP N++ +I
Sbjct: 402 AGDLEVQAFLDEEFEQLQAARDFLRKNKQDDNEQLQLPINVLRII 446



 Score = 41.6 bits (96), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 1508 VMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPE 1551
            +MGIVQDTL  + KM +RDVFL K  A   + + PD  + VIP+
Sbjct: 1    LMGIVQDTLAGIYKMCRRDVFLTKEQAMNILLWVPD-WDGVIPQ 43


>gi|397135936|gb|AFO11463.1| RNA polymerase I, partial [Candida santjacobensis]
          Length = 873

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/412 (52%), Positives = 262/412 (63%), Gaps = 55/412 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MNIL ++P WDG +PQP ILKPKPLWTGKQ+ SL IP  + + R    +P       
Sbjct: 357 DQVMNILFWVPHWDGVVPQPAILKPKPLWTGKQMASLCIPKGIFLQRFDEGNP------- 409

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              ISP D  +++  G ++ G++ KK++G + G L+H    E G +VC  F+GNIQ VVN
Sbjct: 410 --LISPKDNGMLISKGEIMYGVVDKKTVGATGGGLIHTIMREKGPQVCSSFFGNIQKVVN 467

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 468 FWLL---------------------------------------HN-------GFSIGIGD 481

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T  +I   I +AK+ V E+I +A    L P PG TLR++FE  V+R+LN ARD 
Sbjct: 482 TIADGATMRDIANTISEAKQKVQEIILQAQANTLSPEPGMTLRESFEQNVSRVLNQARDT 541

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ SL E NN+K MVVAGSKGS INIS + ACVGQQ VEG+RIPFGF  R+LPHF 
Sbjct: 542 AGRSAEMSLKELNNVKQMVVAGSKGSFINISLMSACVGQQIVEGRRIPFGFADRSLPHFT 601

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYI RRL+KA+E +
Sbjct: 602 KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIXRRLVKALEDI 661

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           MVHYD T RNS+G +IQ  YGEDGL G  VE Q +DT+  S + F  +YR D
Sbjct: 662 MVHYDGTTRNSLGDVIQFIYGEDGLDGTQVEKQSVDTIPGSDETFRRRYRVD 713



 Score =  142 bits (358), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/98 (66%), Positives = 76/98 (77%)

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
            ACVGQQ VEG+RIPFGF  R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GRE
Sbjct: 576  ACVGQQIVEGRRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGRE 635

Query: 1073 GLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 636  GLIDTAVKTAETGYIXRRLVKALEDIMVHYDGTTRNSL 673



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 103/223 (46%), Gaps = 49/223 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYI RRL+KA+E +MVHYD T RNS+G +IQ  YGEDGL G  VE Q +DT+  S + F 
Sbjct: 648 GYIXRRLVKALEDIMVHYDGTTRNSLGDVIQFIYGEDGLDGTQVEKQSVDTIPGSDETFR 707

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YR D      L       +  EL+ SG                            +E+
Sbjct: 708 RRYRVD------LLDPTKGGIRDELLESG----------------------------KEI 733

Query: 712 MGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEVIFILQRWKLWGNEN- 769
            G   +   L++E+++L EDR  LR I F +G+ N  LP NL  +I   Q+    G    
Sbjct: 734 RGDVKLQKILDEEFKQLVEDRNYLRNICFPNGDYNWPLPVNLRRIIQNAQQIFHNGRHKA 793

Query: 770 -----------LRFLCKIIFVLSVRK--SVEKEMNTVLQFYGL 799
                      +R LC  + V+  +   S+E + N  L F  L
Sbjct: 794 SDLKLDEVVLGVRELCTKLLVVRGKSELSLEAQANATLLFQCL 836



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 45/59 (76%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+ +LS +A  NATLLFQCL+RS L T+ V E ++LS  +F+W++GE+E +FQ++ V
Sbjct: 815  VRGKSELSLEAQANATLLFQCLLRSRLATRRVIEEFKLSKISFDWVLGEVETQFQKSLV 873



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 24/124 (19%)

Query: 1494 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPEDQ 1553
            + P QI++PQ+N+PVMGIVQDTL  +RKMTKRD F+                     E  
Sbjct: 319  MVPLQIVSPQSNKPVMGIVQDTLCGIRKMTKRDTFI---------------------EFD 357

Query: 1554 EFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPT 1613
            + +N+ + +P +D     P +L+    +   T K++    I + I     D+ N  +SP 
Sbjct: 358  QVMNILFWVPHWDGVVPQPAILK---PKPLWTGKQMASLCIPKGIFLQRFDEGNPLISPK 414

Query: 1614 DKKL 1617
            D  +
Sbjct: 415  DNGM 418


>gi|325183802|emb|CCA18261.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 1819

 Score =  415 bits (1067), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/482 (48%), Positives = 303/482 (62%), Gaps = 47/482 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D LS +A ENATL FQ L+RS L +K V   +RL+  AFEWL+GEIE++F  + V 
Sbjct: 1032 VQGNDPLSLEAQENATLFFQILLRSALASKCVTLEHRLTETAFEWLLGEIESKFTSSLVS 1091

Query: 1013 A-----CVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
            A      V  Q+                 V  K +  G  R + + +  KD   P  + F
Sbjct: 1092 AGEMAGVVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIMNIAKDVRTPSLQIF 1151

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
                    LTP          +   I + ++          L  VTANTAI+YDPDP NT
Sbjct: 1152 --------LTPD---CAHDADKAKFIQSQLE-------YTTLADVTANTAIFYDPDPMNT 1193

Query: 1110 VIPEDQEFVNVYYEMPDFD-PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDL 1168
            +I EDQEFV+ YYEMPD D P   SPWLLRIEL+R+ M DKKLTM  I+ +I + +G DL
Sbjct: 1194 IIEEDQEFVSTYYEMPDEDTPVARSPWLLRIELNREMMADKKLTMSEIASQIESEYGQDL 1253

Query: 1169 NCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEA 1228
            +CIF DDNA+KLVLRIRI++ ++ KMQ   ++    EDD FL+ +E NML+ M L+G+++
Sbjct: 1254 SCIFTDDNADKLVLRIRIVSDEEEKMQRTGESTVGQEDDTFLKRVEHNMLTQMKLRGVQS 1313

Query: 1229 IGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDIC 1288
            + KVY+     + +      + G FK   +W+L+TDGT+L+ VL    VD  RT SNDI 
Sbjct: 1314 VKKVYIR----EGRPTHWFDDVG-FKMTTEWVLDTDGTNLLDVLCFPQVDGTRTISNDIV 1368

Query: 1289 EIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQD 1348
            EI QVLGIEAVR+++  E+  V+ F G YVNYRHLA L DVMT +GHLMAITRHGINR D
Sbjct: 1369 EIIQVLGIEAVRRALLNEIRQVISFDGAYVNYRHLACLADVMTFRGHLMAITRHGINRDD 1428

Query: 1349 TGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDG 1408
            +G L+RCSFEETV++LMDAA  +E DP+ GVSEN+++GQL  +GTG  DL+LDA+K  D 
Sbjct: 1429 SGPLVRCSFEETVEILMDAAMFSEGDPLTGVSENVMLGQLAPLGTGITDLVLDAKKLTDA 1488

Query: 1409 IE 1410
            IE
Sbjct: 1489 IE 1490



 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/422 (50%), Positives = 269/422 (63%), Gaps = 58/422 (13%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPK--------PLWTGKQVFSLIIPGNVNMTRTHSTHPD 126
           +MN+LM++  WDG++P P IL PK        P+WTGKQ+FS +IP ++N T   STH  
Sbjct: 552 VMNLLMWVFNWDGRIPTPAILVPKKGEIGKYRPIWTGKQMFSQVIP-DINFTGFSSTHSS 610

Query: 127 DEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGN 186
            E    +  +SP D++V+V+ G LL GI+ KK++G+S+G L+H   LE G E    F G 
Sbjct: 611 KES---FAKLSPIDSRVIVQRGELLAGIIDKKTIGSSAGGLIHTTMLEKGPEEAKYFLGA 667

Query: 187 IQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGH 246
           +Q +VNNWL+  G S                                             
Sbjct: 668 VQKLVNNWLV--GRSF-------------------------------------------- 681

Query: 247 SIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRIL 306
           ++G+ D IAD  T   I   I +AK  V +++Q+     LE  PG T+ ++FE  VN++L
Sbjct: 682 TVGVSDAIADVSTLKTIVDIITQAKVQVHDLVQRGQKGKLETQPGRTMVESFEQLVNKVL 741

Query: 307 NDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
           N ARD+ G  A+ SL E NN+KA V +GSKGS INISQ+IACVGQQNVEGKRIP+GF+ R
Sbjct: 742 NTARDQAGREAQGSLDETNNIKATVTSGSKGSFINISQIIACVGQQNVEGKRIPYGFQHR 801

Query: 367 TLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLI 426
           TLPH+ KDD GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+
Sbjct: 802 TLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 861

Query: 427 KAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPS 486
           KAMESVM  YD TVRN+ G++IQ  YGEDG+    VE QR ++  L+  +FE KY FD S
Sbjct: 862 KAMESVMARYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESHRLNKVEFEQKYMFDTS 921

Query: 487 NE 488
           +E
Sbjct: 922 SE 923



 Score =  170 bits (431), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 92/218 (42%), Positives = 125/218 (57%), Gaps = 39/218 (17%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+++  E+  V+ F G YVNYRHLA L DVMT +GHLMAITRHGINR D+
Sbjct: 1370 IIQVLGIEAVRRALLNEIRQVISFDGAYVNYRHLACLADVMTFRGHLMAITRHGINRDDS 1429

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G L+RCSFEETV++LMDAA  +E DP+ GVSEN+++GQL  +GTG  DL+LDA+K  D I
Sbjct: 1430 GPLVRCSFEETVEILMDAAMFSEGDPLTGVSENVMLGQLAPLGTGITDLVLDAKKLTDAI 1489

Query: 893  E-------------------------IPLATGMMGGP-----------AGMFFGSAATPS 916
            E                          P+AT     P            G F  +A T S
Sbjct: 1490 EYEASEIQQVMRGINDEWRSPEQGPGTPMATPFTSTPGFSASSPFSPGGGSFSPAAGTFS 1549

Query: 917  SMSPQMTPWAQSTPAYNALM---SPGAAMTPGGPGFSP 951
             M+   +P   S+P ++      SPG ++ P  P FSP
Sbjct: 1550 PMASPASPGFMSSPGFSVASPARSPGVSLDPASPAFSP 1587



 Score =  149 bits (376), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/146 (54%), Positives = 94/146 (64%), Gaps = 10/146 (6%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+IACVGQQNVEGKRIP+GF+ RTLPH+ KDD GPESRGFVENSYL GLTP EFFFHAM
Sbjct: 778  SQIIACVGQQNVEGKRIPYGFQHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAM 837

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   +    YD     TV     E +   Y     D
Sbjct: 838  GGREGLIDTAVKTAETGYIQRRLVKAMESVMARYD----GTVRNAQGEIIQFLYGEDGMD 893

Query: 1129 PTRI------SPWLLRIELDRKRMTD 1148
               +      S  L ++E ++K M D
Sbjct: 894  AVWVEKQRFESHRLNKVEFEQKYMFD 919



 Score =  143 bits (361), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 76/153 (49%), Positives = 95/153 (62%), Gaps = 29/153 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD-PTRISPWLLRIELDRKRMTDK 1587
            L  VTANTAI+YDPDP NT+I EDQEFV+ YYEMPD D P   SPWLLRIEL+R+ M DK
Sbjct: 1175 LADVTANTAIFYDPDPMNTIIEEDQEFVSTYYEMPDEDTPVARSPWLLRIELNREMMADK 1234

Query: 1588 KLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLV 1647
            KLTM  I                            + +I + +G DL+CIF DDNA+KLV
Sbjct: 1235 KLTMSEI----------------------------ASQIESEYGQDLSCIFTDDNADKLV 1266

Query: 1648 LRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            LRIRI++ ++ KMQ   ++    EDD FL+ +E
Sbjct: 1267 LRIRIVSDEEEKMQRTGESTVGQEDDTFLKRVE 1299



 Score =  116 bits (291), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 87/161 (54%), Gaps = 31/161 (19%)

Query: 520  EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 579
            E+  V+ F G YVNYRHLA L DVMT +GHLMAITRHGINR D+G L+RCSFEETV++LM
Sbjct: 1386 EIRQVISFDGAYVNYRHLACLADVMTFRGHLMAITRHGINRDDSGPLVRCSFEETVEILM 1445

Query: 580  DAAAHAEADPMRGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQR 639
            DAA  +E DP+ G          E+VM          +GQL  L  G             
Sbjct: 1446 DAAMFSEGDPLTG--------VSENVM----------LGQLAPLGTG------------- 1474

Query: 640  IDTVALSHKKFEDKYRFDPSNERQLRRIFNEDVLRELMGSG 680
            I  + L  KK  D   ++ S  +Q+ R  N++      G G
Sbjct: 1475 ITDLVLDAKKLTDAIEYEASEIQQVMRGINDEWRSPEQGPG 1515



 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 51/70 (72%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAMESVM  YD TVRN+ G++IQ  YGEDG+    VE QR ++  L+  +FE
Sbjct: 854 GYIQRRLVKAMESVMARYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESHRLNKVEFE 913

Query: 652 DKYRFDPSNE 661
            KY FD S+E
Sbjct: 914 QKYMFDTSSE 923



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 36/49 (73%)

Query: 1483 LTLTLMVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            LT     + + +  + IITPQ+NRPVMGIVQD+L  V+K TKRD+F++K
Sbjct: 501  LTARAEAQELMMVHKVIITPQSNRPVMGIVQDSLLGVQKFTKRDIFIEK 549



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 35/45 (77%)

Query: 35  LGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           LG+D ++ARPDW+++T++PVPP  VRP+V + G AR ++ + + L
Sbjct: 228 LGLDSRWARPDWLILTLMPVPPPHVRPSVALDGMARGEDDLTHNL 272


>gi|384253754|gb|EIE27228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Coccomyxa subellipsoidea C-169]
          Length = 1566

 Score =  415 bits (1066), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/439 (49%), Positives = 278/439 (63%), Gaps = 56/439 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
            MNILM+L  WDGK+P P ILKPKPLWTGKQV++L +P  VN+ R  + + D+E   P  
Sbjct: 480 FMNILMWLEDWDGKIPMPAILKPKPLWTGKQVYNLFMP-RVNIRRQSAWYKDNE---PLD 535

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
           + SP D++V++++G LL G LCKK+LG S+GSL+H+ ++E G E    F    Q   N+W
Sbjct: 536 F-SPSDSQVLIQNGELLTGTLCKKTLGASAGSLIHVIWMEEGPEAARAFLSQSQYTTNHW 594

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           LL  G SIGIGDT+AD +T   I   I +AKE V  + +K  N DLE  PG         
Sbjct: 595 LLQHGFSIGIGDTVADAKTMNIISETIAEAKEKVKLLTEKLQNRDLEARPGM-------- 646

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                 T+ ++FE QVN++LN ARD  G
Sbjct: 647 --------------------------------------TMMESFEQQVNQVLNTARDDAG 668

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
             A+ SL + NN+  MV AGSKGS INISQ+IACVGQQNVEGKRIPFGF++RTLPHF KD
Sbjct: 669 KLAQSSLDDTNNVVRMVTAGSKGSFINISQMIACVGQQNVEGKRIPFGFQRRTLPHFTKD 728

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D GPESRGFVENSYL GLTP E FFHAMGGREGLIDTAVKT+ TGYIQRRL+KAME +M+
Sbjct: 729 DLGPESRGFVENSYLRGLTPQELFFHAMGGREGLIDTAVKTSSTGYIQRRLVKAMEDLMI 788

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT--- 491
            YD TVR + G ++Q  YGEDG+ G A+E Q+++ + ++ +KF +K+  D S  R T   
Sbjct: 789 KYDGTVRTANGSVVQFLYGEDGMDGTAIESQKLEHLRMTEEKFRNKFYLDVSPGRGTPDW 848

Query: 492 --LRNVSSLRRVVNSKPLL 508
                   LR  V ++ LL
Sbjct: 849 LDPETAEQLRHSVEARQLL 867



 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 230/510 (45%), Positives = 300/510 (58%), Gaps = 34/510 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G D+LS++A  NATLLF   +R+T  +K V  +Y+ + EAF+W++GEIE RF  A   
Sbjct: 941  VDGPDELSQEAQRNATLLFLSFLRATFASKRVIRDYKFNREAFDWILGEIETRFHAALAY 1000

Query: 1010 --QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL-----TPSE 1062
              ++I  V  Q++ G+  P         HF        + G    + +  +     TPS 
Sbjct: 1001 PGEMIGTVAAQSI-GE--PTTQMTLNTFHFAGVSAKNVTLGVPRLTEIINIAKNIKTPSL 1057

Query: 1063 FFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
              F  + G       A K  +       L +VT  T IYYDPDP  TVI ED+EFV  Y+
Sbjct: 1058 TVF--LLGEASRDREAAKQVQCSLEYTTLRKVTGATEIYYDPDPTTTVIDEDREFVENYF 1115

Query: 1123 EMPD--FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1180
            EMPD   D  R+SPWLLRIEL+R  M DKKL+M  I+E+IN+ F D+L CIFNDDNA KL
Sbjct: 1116 EMPDEDMDVNRMSPWLLRIELNRDMMVDKKLSMSDIAERINSEFEDELTCIFNDDNAPKL 1175

Query: 1181 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD 1240
            +LRIR++N +  K    E       DD+FLR IEA MLS + LQGI  I KV +      
Sbjct: 1176 ILRIRVLNDEGGK----EAEAQSETDDVFLRKIEATMLSQVALQGIPDIHKVSLR----- 1226

Query: 1241 SKKRIIITESGE--FKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
              KRI+ +      +   ++W+L+T+G +L +V+   DVD  RT SN + EI +VLGIEA
Sbjct: 1227 ESKRIVPSSDAPDGYTNDSEWVLDTEGVNLSEVMCHPDVDYRRTISNHLVEIIEVLGIEA 1286

Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
             R ++ KEM  V++F G YVNYRHLA L D MT++GH MAITRHGINRQ+ G L +CSFE
Sbjct: 1287 ARNALLKEMRGVIEFDGSYVNYRHLAALVDSMTSRGHFMAITRHGINRQENGPLAQCSFE 1346

Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL----- 1413
            ETVD+L  AAA +E D M GVSENI++GQL  +GTG F L+LD  K  D IE+       
Sbjct: 1347 ETVDILFRAAAFSEKDHMTGVSENIMLGQLAPLGTGSFGLMLDESKLADAIELEFDALGR 1406

Query: 1414 ATGMMGGPAGMFFGSAATPSSIPGPPAWYP 1443
              GMM  P  M     A+P   P  P + P
Sbjct: 1407 TPGMM-TPGRMTPSRIASPGYSPTSPGYSP 1435



 Score =  167 bits (422), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 94/189 (49%), Positives = 120/189 (63%), Gaps = 15/189 (7%)

Query: 773  LCKIIFVLSV---RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
            L +II VL +   R ++ KEM  V++F G YVNYRHLA L D MT++GH MAITRHGINR
Sbjct: 1275 LVEIIEVLGIEAARNALLKEMRGVIEFDGSYVNYRHLAALVDSMTSRGHFMAITRHGINR 1334

Query: 830  QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
            Q+ G L +CSFEETVD+L  AAA +E D M GVSENI++GQL  +GTG F L+LD  K  
Sbjct: 1335 QENGPLAQCSFEETVDILFRAAAFSEKDHMTGVSENIMLGQLAPLGTGSFGLMLDESKLA 1394

Query: 890  DGIEIPLATGMMGGPAGMFFGSAATPSSM-SPQMTPWAQSTPAYNALMSPG-----AAMT 943
            D IE+      +G   GM      TPS + SP  +P   ++P Y+   SPG      A +
Sbjct: 1395 DAIELEFDA--LGRTPGMMTPGRMTPSRIASPGYSP---TSPGYSP-TSPGYSPTSPAYS 1448

Query: 944  PGGPGFSPS 952
            P  PG+SP+
Sbjct: 1449 PTSPGYSPT 1457



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/143 (56%), Positives = 94/143 (65%), Gaps = 8/143 (5%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+IACVGQQNVEGKRIPFGF++RTLPHF KDD GPESRGFVENSYL GLTP E FFHAM
Sbjct: 697  SQMIACVGQQNVEGKRIPFGFQRRTLPHFTKDDLGPESRGFVENSYLRGLTPQELFFHAM 756

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKT+ T  +   L +   +  I YD     TV   +   V   Y     D
Sbjct: 757  GGREGLIDTAVKTSSTGYIQRRLVKAMEDLMIKYD----GTVRTANGSVVQFLYGEDGMD 812

Query: 1129 PTRISPWLLRIELDRKRMTDKKL 1151
             T I       +L+  RMT++K 
Sbjct: 813  GTAIESQ----KLEHLRMTEEKF 831



 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 89/156 (57%), Gaps = 34/156 (21%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTD 1586
            L KVT  T IYYDPDP  TVI ED+EFV  Y+EMPD   D  R+SPWLLRIEL+R  M D
Sbjct: 1084 LRKVTGATEIYYDPDPTTTVIDEDREFVENYFEMPDEDMDVNRMSPWLLRIELNRDMMVD 1143

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+                            M  I+E+IN+ F D+L CIFNDDNA KL
Sbjct: 1144 KKLS----------------------------MSDIAERINSEFEDELTCIFNDDNAPKL 1175

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEET 1682
            +LRIR++N +  K    E       DD+FLR IE T
Sbjct: 1176 ILRIRVLNDEGGK----EAEAQSETDDVFLRKIEAT 1207



 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 57/74 (77%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            KEM  V++F G YVNYRHLA L D MT++GH MAITRHGINRQ+ G L +CSFEETVD+L
Sbjct: 1293 KEMRGVIEFDGSYVNYRHLAALVDSMTSRGHFMAITRHGINRQENGPLAQCSFEETVDIL 1352

Query: 579  MDAAAHAEADPMRG 592
              AAA +E D M G
Sbjct: 1353 FRAAAFSEKDHMTG 1366



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 90/171 (52%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +M+ YD TVR + G ++Q  YGEDG+ G A+E Q+++ + ++ +KF 
Sbjct: 773 GYIQRRLVKAMEDLMIKYDGTVRTANGSVVQFLYGEDGMDGTAIESQKLEHLRMTEEKFR 832

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           +K+  D S  R               G+ D         +D  + +QLR        R+L
Sbjct: 833 NKFYLDVSPGR---------------GTPD--------WLDPETAEQLRHSVEA---RQL 866

Query: 712 MGSGDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVIFILQR 761
                    L+ E+E+L  D + LR E+  +G++ V LP N   +I+  Q+
Sbjct: 867 ---------LDAEYEQLETDLKTLRTEVMRTGDAGVQLPVNFKRLIWNAQQ 908



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 31/40 (77%)

Query: 1492 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            I + PR I++PQ N+PV+GIVQDTL   R MTKRD F++K
Sbjct: 438  IMMVPRNIVSPQANKPVIGIVQDTLLGCRLMTKRDTFIEK 477


>gi|113957504|gb|ABI49116.1| RNA polymerase II largest subunit [Lobariella pallida]
          Length = 1002

 Score =  415 bits (1066), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/421 (50%), Positives = 267/421 (63%), Gaps = 58/421 (13%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           N+EQ+MNIL+++P WDG +PQP ILKP+P WTGKQ+ SL+IP  +N+TR+ S        
Sbjct: 463 NKEQVMNILLWVPDWDGVLPQPAILKPRPKWTGKQIISLVIPPGLNLTRSSS-------- 514

Query: 131 GPYQWISP-GDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQT 189
              +  SP  D  + V  G L+ G+  KKS+G +SG ++HI F E G E    F+   QT
Sbjct: 515 ---EGFSPLNDDGLFVSGGELMYGLFNKKSVGATSGGIIHIIFNEKGPEAAMNFFNGAQT 571

Query: 190 VVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIG 249
           VVN WLL  G SIGIGDTI D  T   I+ A+ + KEDV E+ + A   DLEP PG ++ 
Sbjct: 572 VVNYWLLHNGFSIGIGDTIPDRNTIQRIENAVNQQKEDVAEITRSATENDLEPLPGMNV- 630

Query: 250 IGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDA 309
                                                        R+TFE++V++ LN A
Sbjct: 631 ---------------------------------------------RETFESKVSKALNKA 645

Query: 310 RDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           RD  G   ++ L + NN   M  +GSKGS INISQ+ A VGQQ+VEGKRIPFGF+ RTLP
Sbjct: 646 RDDAGTVTEEGLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLP 705

Query: 370 HFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 429
           HF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+
Sbjct: 706 HFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 765

Query: 430 ESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           E VM  YD TVRNS+G ++Q  YGEDGL G  +E QR+D +  S ++FE K+R D  ++R
Sbjct: 766 EDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIEPQRVDIITCSDQQFEKKFRVDLMDQR 825

Query: 490 P 490
           P
Sbjct: 826 P 826



 Score =  147 bits (371), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 98/160 (61%), Gaps = 4/160 (2%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ A VGQQ+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM
Sbjct: 679  SQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 738

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
             GREGLIDTAVKTAET  +   L +   +    YD   +N++     + V   Y     D
Sbjct: 739  AGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSL----GDIVQFVYGEDGLD 794

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDL 1168
               I P  + I     +  +KK  ++ + ++  A    D 
Sbjct: 795  GVHIEPQRVDIITCSDQQFEKKFRVDLMDQRPEASISPDF 834



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 33/165 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VM  YD TVRNS+G ++Q  YGEDGL G  +E QR+D +  S ++FE
Sbjct: 755 GYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIEPQRVDIITCSDQQFE 814

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+R D  ++R    I + D L +                                  E+
Sbjct: 815 KKFRVDLMDQRPEASI-SPDFLEQAT--------------------------------EM 841

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
            G  ++ S L++E+++L   R+ LR+        + LP N++ ++
Sbjct: 842 AGDLEIQSYLDEEYDQLQAARDFLRKNKRDDNEQLQLPINVIRIL 886



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  + + P  I++PQ N P+MG VQDTL  + K+ +RDVFL+K      + + PD  + V
Sbjct: 422  INQLCMVPLNIVSPQRNGPLMGTVQDTLCGIYKICRRDVFLNKEQVMNILLWVPD-WDGV 480

Query: 1549 IPE 1551
            +P+
Sbjct: 481  LPQ 483



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+D LS++   NAT+LF+  +RS L  K +     L+  AF+ ++GEIE+RF +A V
Sbjct: 922  VRGDDDLSREGQHNATILFKAQLRSRLAFKRLVMECSLNKLAFQHVLGEIESRFCRAAV 980


>gi|113957457|gb|ABI49115.1| RNA polymerase II largest subunit [Lobariella pallida]
          Length = 996

 Score =  415 bits (1066), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/421 (50%), Positives = 267/421 (63%), Gaps = 58/421 (13%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           N+EQ+MNIL+++P WDG +PQP ILKP+P WTGKQ+ SL+IP  +N+TR+ S        
Sbjct: 457 NKEQVMNILLWVPDWDGVLPQPAILKPRPKWTGKQIISLVIPPGLNLTRSSS-------- 508

Query: 131 GPYQWISP-GDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQT 189
              +  SP  D  + V  G L+ G+  KKS+G +SG ++HI F E G E    F+   QT
Sbjct: 509 ---EGFSPLNDDGLFVSGGELMYGLFDKKSVGATSGGIIHIIFNEKGPEAAMNFFNGAQT 565

Query: 190 VVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIG 249
           VVN WLL  G SIGIGDTI D  T   I+ A+ + KEDV E+ + A   DLEP PG ++ 
Sbjct: 566 VVNYWLLHNGFSIGIGDTIPDRNTIQRIENAVNQQKEDVAEITRSATENDLEPLPGMNV- 624

Query: 250 IGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDA 309
                                                        R+TFE++V++ LN A
Sbjct: 625 ---------------------------------------------RETFESKVSKALNKA 639

Query: 310 RDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           RD  G   ++ L + NN   M  +GSKGS INISQ+ A VGQQ+VEGKRIPFGF+ RTLP
Sbjct: 640 RDDAGTVTEEGLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLP 699

Query: 370 HFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 429
           HF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+
Sbjct: 700 HFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 759

Query: 430 ESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           E VM  YD TVRNS+G ++Q  YGEDGL G  +E QR+D +  S ++FE K+R D  ++R
Sbjct: 760 EDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIEPQRVDIITCSDEQFEKKFRVDLMDQR 819

Query: 490 P 490
           P
Sbjct: 820 P 820



 Score =  147 bits (370), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 97/160 (60%), Gaps = 4/160 (2%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ A VGQQ+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM
Sbjct: 673  SQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 732

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
             GREGLIDTAVKTAET  +   L +   +    YD   +N++     + V   Y     D
Sbjct: 733  AGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSL----GDIVQFVYGEDGLD 788

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDL 1168
               I P  + I        +KK  ++ + ++  A    D 
Sbjct: 789  GVHIEPQRVDIITCSDEQFEKKFRVDLMDQRPEASISPDF 828



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 33/165 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VM  YD TVRNS+G ++Q  YGEDGL G  +E QR+D +  S ++FE
Sbjct: 749 GYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIEPQRVDIITCSDEQFE 808

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+R D  ++R    I + D L +                                  E+
Sbjct: 809 KKFRVDLMDQRPEASI-SPDFLEQAT--------------------------------EM 835

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
            G  ++ S L++E+++L   R+ LR+        + LP N++ ++
Sbjct: 836 AGDLEIQSYLDEEYDQLQAARDFLRKNKRDDNEQLQLPINVIRIL 880



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  + + P  I++PQ N P+MGIVQDTL  + K+ +RDVFL+K      + + PD  + V
Sbjct: 416  INQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKLCRRDVFLNKEQVMNILLWVPD-WDGV 474

Query: 1549 IPE 1551
            +P+
Sbjct: 475  LPQ 477



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+D LS++   NAT+LF+  +RS L  K +     L+  AF+ ++GEIE+RF +A V
Sbjct: 916  VRGDDDLSREGQHNATILFKAQLRSRLAFKRLVMECSLNKLAFQHVLGEIESRFCRAAV 974


>gi|397135910|gb|AFO11450.1| RNA polymerase I, partial [Yamadazyma scolyti]
          Length = 863

 Score =  415 bits (1066), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/416 (50%), Positives = 264/416 (63%), Gaps = 57/416 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MN+L ++P WDG +P P +LKPKPLWTGKQ+ S+ IP  +++ R  S          
Sbjct: 355 DQVMNMLYWIPNWDGVIPPPAVLKPKPLWTGKQLLSMAIPKGIHIQRLESN--------- 405

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              +SP D  +++  G ++ G++ KK++G + G L+H    E G +VC + +GNIQ VVN
Sbjct: 406 --LLSPNDNGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFGNIQKVVN 463

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL  G SIGIGDTIAD +T   +   I++AK  V E+I  A    LEP PG       
Sbjct: 464 FWLLHNGFSIGIGDTIADSETMKTVTTTIEEAKTKVQEIILDAQRNKLEPEPGM------ 517

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
                                                   TLR++FE+ V+R+LN ARD 
Sbjct: 518 ----------------------------------------TLRESFEHNVSRVLNQARDT 537

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ SL + NN+K MVV+GSKGS INISQ+ ACVGQQ VEGKRIPFGF  RTLPHF 
Sbjct: 538 AGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFSDRTLPHFT 597

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GF+ENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 598 KDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 657

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
           MVHYD T RNS+G +IQ  YGEDGL G  VE Q IDT+  S   F+ +Y+ D  N+
Sbjct: 658 MVHYDGTTRNSLGDIIQFVYGEDGLDGTQVEKQSIDTIPGSDAAFDKRYKIDLLND 713



 Score =  145 bits (367), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF  RTLPHF KDDY PES+GF+ENSYL GLTP EFFFHAM
Sbjct: 568  SQMSACVGQQIVEGKRIPFGFSDRTLPHFTKDDYSPESKGFIENSYLRGLTPQEFFFHAM 627

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 628  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 669



 Score = 97.8 bits (242), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 41/166 (24%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G +IQ  YGEDGL G  VE Q IDT+  S   F+
Sbjct: 644 GYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGLDGTQVEKQSIDTIPGSDAAFD 703

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +Y+ D         + N+D+  E                                 +E+
Sbjct: 704 KRYKID---------LLNDDLPIE-------------------------------SAKEI 723

Query: 712 MGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEVI 756
            G  D+   +++E+ +L +DR  LR I F +G+S+  LP NL  +I
Sbjct: 724 KGDVDLQRLVDEEYSQLLKDRHYLRTICFPNGDSSWPLPVNLRRII 769



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 46/59 (77%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            + G+  L+K+A ENATLLFQCL+RS L ++ V E ++L+  +FEW+VGEIE +FQ++ V
Sbjct: 805  IRGDSPLAKEAQENATLLFQCLLRSRLASRRVIEEFKLNKVSFEWVVGEIETQFQKSAV 863



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 39/62 (62%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   P QI++PQ+N+PVMGIVQDTL  VRKMT RD F++       +Y+ P+    +
Sbjct: 312  LSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMLYWIPNWDGVI 371

Query: 1549 IP 1550
             P
Sbjct: 372  PP 373


>gi|110669656|gb|ABG81922.1| RNA polymerase II largest subunit, partial [Acarospora laqueata]
          Length = 1016

 Score =  414 bits (1065), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/414 (51%), Positives = 265/414 (64%), Gaps = 58/414 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MNIL+++P WDG +PQP I+KP+P WTGKQ+ SL+IP  +N+ R+           
Sbjct: 480 KEQVMNILLWVPDWDGVIPQPAIIKPRPKWTGKQIISLVIPKGLNLIRSSE--------- 530

Query: 132 PYQWISPG-DTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
             + +SP  D  + V  G L+ G+  KKS+G S G ++HI F E G EV   F+   QTV
Sbjct: 531 --EGLSPANDEGLFVHGGELMYGLFSKKSVGASGGGIIHIIFNEKGPEVAMNFFNGAQTV 588

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN WLL                                       HN       G SIGI
Sbjct: 589 VNYWLL---------------------------------------HN-------GFSIGI 602

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTI D  T  +I+ A+ K K DV E+ + A   +LEP PG  +R+TFE++V++ LN AR
Sbjct: 603 GDTIPDRSTIQQIENAVNKQKADVAEITRSATENELEPLPGMNVRETFESRVSKALNAAR 662

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           D+ G   +KSL + NN   M  +GSKGS INISQ+ A VGQQ+VEGKRIPFGF+ RTLPH
Sbjct: 663 DEAGAVTEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH 722

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E
Sbjct: 723 FTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALE 782

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            VM  YD TVRNS+G ++Q  YGEDGL G  +E QR+D +A S K+FE K+R D
Sbjct: 783 GVMAKYDGTVRNSLGDVVQFVYGEDGLDGSHIEQQRVDIIACSDKQFEKKFRVD 836



 Score =  143 bits (361), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 78/102 (76%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ A VGQQ+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM
Sbjct: 695  SQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 754

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +        YD   +N++
Sbjct: 755  AGREGLIDTAVKTAETGYIQRRLVKALEGVMAKYDGTVRNSL 796



 Score = 96.3 bits (238), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 83/168 (49%), Gaps = 41/168 (24%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VM  YD TVRNS+G ++Q  YGEDGL G  +E QR+D +A S K+FE
Sbjct: 771 GYIQRRLVKALEGVMAKYDGTVRNSLGDVVQFVYGEDGLDGSHIEQQRVDIIACSDKQFE 830

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLR-- 709
            K+R D                  LM +   IS                     DVL   
Sbjct: 831 KKFRVD------------------LMDTKAGIS--------------------PDVLELA 852

Query: 710 -ELMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
            E+ G  +V    ++EWE+L  DR  LR+        + LP N++ ++
Sbjct: 853 TEIAGDVEVQQYFDEEWEQLKLDRAFLRKNKQDDTEQLQLPINVLRIL 900



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 41/59 (69%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+D+LS +A ENAT+LF+  +RS L  K +   Y L+  AF+ ++GEIE+RF +A V
Sbjct: 936  VRGDDKLSIEAQENATMLFKAHLRSRLAFKRIVTEYSLNKLAFQHVLGEIESRFARAAV 994



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  + + P  I++PQ N P+MGIVQDTL  V KM +RDVFL K      + + PD  + V
Sbjct: 438  INQLCMVPLNIVSPQRNGPLMGIVQDTLCGVYKMCRRDVFLTKEQVMNILLWVPD-WDGV 496

Query: 1549 IPE 1551
            IP+
Sbjct: 497  IPQ 499


>gi|397135860|gb|AFO11425.1| RNA polymerase I, partial [Kregervanrija fluxuum]
          Length = 870

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/421 (51%), Positives = 268/421 (63%), Gaps = 57/421 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MNI  ++P WDG +PQP ILKPKPLW+GKQV SL IP  + + R   +         
Sbjct: 357 DQVMNICFWIPNWDGVVPQPAILKPKPLWSGKQVLSLCIPKGIFLQRLDGS--------- 407

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              +SP D+ +++ +G ++ G++ K ++G S+G L+H    E G EVC + +GNIQ VVN
Sbjct: 408 --LLSPKDSGMLIVNGEIMFGVVNKATVGASAGGLIHTTMREKGPEVCAKMFGNIQKVVN 465

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 466 FWLL---------------------------------------HN-------GFSIGIGD 479

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
            IADP+T   I   I  AKE V  VI+ A +  LEP PG T+R++FE +V++ILN+ARD 
Sbjct: 480 AIADPETMKTITETIDVAKEKVQVVIRDAQHNLLEPEPGMTVRESFEQKVSKILNEARDA 539

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ SL + NN+K MV AGSKGS INISQ+ ACVGQQ VEGKRI FGF  R+LPHF 
Sbjct: 540 AGKSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRIHFGFSDRSLPHFT 599

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY  ES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 600 KDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDI 659

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MVHYD T RNS+G +IQ  YGEDGL   +VE Q +DT+  S  +FE KYR D  +   +L
Sbjct: 660 MVHYDGTTRNSLGDVIQFIYGEDGLDATSVEKQTVDTIPGSTSEFERKYRIDLMDSSKSL 719

Query: 493 R 493
           R
Sbjct: 720 R 720



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 77/102 (75%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRI FGF  R+LPHF KDDY  ES+GFVENSYL GLTP EFFFHAM
Sbjct: 570  SQMSACVGQQIVEGKRIHFGFSDRSLPHFTKDDYSAESKGFVENSYLRGLTPQEFFFHAM 629

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 630  AGREGLIDTAVKTAETGYIQRRLLKALEDIMVHYDGTTRNSL 671



 Score =  103 bits (258), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 91/166 (54%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G +IQ  YGEDGL   +VE Q +DT+  S  +FE
Sbjct: 646 GYIQRRLLKALEDIMVHYDGTTRNSLGDVIQFIYGEDGLDATSVEKQTVDTIPGSTSEFE 705

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KYR D                  LM S      L  ++V++ S              E+
Sbjct: 706 RKYRID------------------LMDSS---KSLRPDLVEYGS--------------EI 730

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVI 756
           +G   +   L++E+E+L +DRE LR  +F +G++N  LP N+  VI
Sbjct: 731 LGDIKLQKILDEEYEQLLKDREYLRTVVFPNGDNNWPLPVNIRRVI 776



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 43/59 (72%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+  +  +A +NATLLFQCLVRS L T+ + E +RL+ +AFEW++G IE +F ++ V
Sbjct: 812  VRGKGGVLNEAQQNATLLFQCLVRSRLATRRIIEEFRLNKDAFEWVLGTIEQQFARSLV 870



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 1/56 (1%)

Query: 1496 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPE 1551
            P QI++PQ+N+PVMGIVQDTL  VRKMT RD FL+        ++ P+  + V+P+
Sbjct: 321  PLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFLEYDQVMNICFWIPN-WDGVVPQ 375


>gi|157841500|gb|ABV83216.1| RNA polymerase 2 [Pelodera pseudoteres]
          Length = 366

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/368 (58%), Positives = 266/368 (72%), Gaps = 9/368 (2%)

Query: 977  STLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--QVIACVGQQNVEGKRIPFGFRKRTL 1034
            STLC+K +A+ ++L+  AF+WL+GEIE+RFQQA  Q    VG    +    P        
Sbjct: 1    STLCSKQMADKHKLNESAFDWLLGEIEHRFQQAIVQPGEMVGALAAQSLGEPATQMTLNT 60

Query: 1035 PHFIKDDYGPESRGF-----VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV 1089
             HF        + G      + N   +  TPS   F  + G         K         
Sbjct: 61   FHFAGVSAKNVTLGVPRLKEIINVSKSPRTPSLTVF--LQGAAAKDAEKAKDVLCKLEHT 118

Query: 1090 FLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDK 1149
             L +VT+NTAIYYDPDP+NT I ED+E+V+++YEMPDFD +R SPWLLRIELDRKRMTDK
Sbjct: 119  TLRKVTSNTAIYYDPDPKNTCIEEDEEWVSIFYEMPDFDVSRSSPWLLRIELDRKRMTDK 178

Query: 1150 KLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMF 1209
            KLTME+I+++++ GFGDDLN I+ DDNA+KLV R+RI N D+S   + E+ VDKMEDD+F
Sbjct: 179  KLTMESIADRVHQGFGDDLNVIYTDDNADKLVFRLRITNQDNSDKGESEEQVDKMEDDVF 238

Query: 1210 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLM 1269
            LRCIE+NMLSD+TLQGIEAI KVYMH P TD KKR+IITE G FKAI +W+LETDGT+L+
Sbjct: 239  LRCIESNMLSDLTLQGIEAISKVYMHKPTTDDKKRMIITEEGGFKAIPEWILETDGTALL 298

Query: 1270 KVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDV 1329
            +VLSE++VDP+RT SNDICEIF+VLGIEAVRK +E+EM+ V+ F G YVNYRHLALLCDV
Sbjct: 299  RVLSEQNVDPIRTSSNDICEIFEVLGIEAVRKGIEREMHQVISFDGSYVNYRHLALLCDV 358

Query: 1330 MTAKGHLM 1337
            MTAKGHLM
Sbjct: 359  MTAKGHLM 366



 Score =  179 bits (453), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 87/152 (57%), Positives = 108/152 (71%), Gaps = 28/152 (18%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVT+NTAIYYDPDP+NT I ED+E+V+++YEMPDFD +R SPWLLRIELDRKRMTDKK
Sbjct: 120  LRKVTSNTAIYYDPDPKNTCIEEDEEWVSIFYEMPDFDVSRSSPWLLRIELDRKRMTDKK 179

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME+I+++++ GFGDDLN                             I+ DDNA+KLV 
Sbjct: 180  LTMESIADRVHQGFGDDLNV----------------------------IYTDDNADKLVF 211

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI N D+S   + E+ VDKMEDD+FLRCIE
Sbjct: 212  RLRITNQDNSDKGESEEQVDKMEDDVFLRCIE 243



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 41/51 (80%), Gaps = 3/51 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 820
           +C+I  VL   +VRK +E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLM
Sbjct: 316 ICEIFEVLGIEAVRKGIEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLM 366



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/35 (77%), Positives = 31/35 (88%)

Query: 517 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 551
           +E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLM
Sbjct: 332 IEREMHQVISFDGSYVNYRHLALLCDVMTAKGHLM 366


>gi|422727796|gb|AFX61755.2| RNA polymerase I largest subunit, partial [Ascosphaera torchioi]
          Length = 1651

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/415 (50%), Positives = 267/415 (64%), Gaps = 54/415 (13%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MNI+M++P WDG +PQP I KP+P WTGKQ+ S+++P  +N+ R       D+D  
Sbjct: 471 KEQVMNIMMWVPDWDGVIPQPAIFKPRPRWTGKQIISMVLPAGLNLLRL------DKDKA 524

Query: 132 PY--QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQT 189
           P   ++  P D  + V  G L+ G+  KKS+G + G ++H  F E GHEV   F+   QT
Sbjct: 525 PLGDRFSPPADGGLFVHGGELMFGMFSKKSVGAAGGGIIHTIFNEYGHEVALNFFNGAQT 584

Query: 190 VVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIG 249
           VVN WLL                                       HN       G SIG
Sbjct: 585 VVNYWLL---------------------------------------HN-------GFSIG 598

Query: 250 IGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDA 309
           IGDTI D  T  +I+ A++  KE+V  +   A +  LEP PG  +R+TFE++V+R LN+A
Sbjct: 599 IGDTIPDAGTIEKIEQAVRVRKEEVDTITASATDNTLEPLPGMNVRETFESKVSRALNNA 658

Query: 310 RDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           RD+ G   +KSL + NN   M  +GSKGS INISQ++A VGQQ+VEGKRIPFGF+ RTLP
Sbjct: 659 RDEAGTVTEKSLKDCNNGVQMARSGSKGSTINISQMMAIVGQQSVEGKRIPFGFKYRTLP 718

Query: 370 HFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 429
           HF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDTAVKTAETGYIQR+L+KA+
Sbjct: 719 HFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKAL 778

Query: 430 ESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           E VMV YD TVRNS+G +IQ  YGEDGL G  +E+QR+D +  S +KF  +YR D
Sbjct: 779 EEVMVKYDGTVRNSLGDVIQFLYGEDGLDGAHIENQRVDIITCSDEKFRRRYRVD 833



 Score =  293 bits (751), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 200/553 (36%), Positives = 307/553 (55%), Gaps = 43/553 (7%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+D +SK+A E+AT+LF+C +RS L  + +   Y L+  AF+ ++G IEN+F +A   
Sbjct: 933  VRGDDIISKEAQESATILFRCHLRSRLAFRRLVVEYSLNKLAFQHVLGAIENKFARAVAN 992

Query: 1010 --QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL-----TPSE 1062
              +++  +  Q++ G+  P         HF        + G      +  +     TPS 
Sbjct: 993  PGEMVGVLAAQSI-GE--PATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKNIKTPSM 1049

Query: 1063 FFFH--AMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNV 1120
              +   ++ G +  +       E  +    L  VT  T IYYDPD Q+TVI  D++ V  
Sbjct: 1050 TVYQDPSIAGEKETVKQLRSAVEHTS----LRSVTEATEIYYDPDIQSTVIEADRDMVES 1105

Query: 1121 YYEMPDF---DPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNA 1177
            Y+ +P+    D +R S WLLRI L R ++ DK LT++ ++ KI   +  D+  IF+D+NA
Sbjct: 1106 YFIIPEDVNDDMSRQSKWLLRIILSRAKLLDKNLTVQDVASKIKEEYPRDVAVIFSDNNA 1165

Query: 1178 EKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1237
            ++ V+RIR ++   +   +++D    +     L+ +EA++L  +TL+G+  + + ++   
Sbjct: 1166 DEQVIRIRQIHETKADEDEDDDTEYDVT----LKRLEAHLLDTLTLRGVSGVERAFI--- 1218

Query: 1238 QTDSKKRIIITESGEF-KAIAD-----WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF 1291
              + K  + + E G   K+ AD     W+LET G++L +VL+   VD  RT+SN   E+ 
Sbjct: 1219 --NEKTIVRVLEDGSLRKSSADPFCKEWVLETSGSALAEVLAIPGVDATRTYSNQFSEVL 1276

Query: 1292 QVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 1351
            +V GIEA R ++ +E+  VL F G YVN+RHLALL DVMT+ G +MA+TRHGINR DTGA
Sbjct: 1277 EVFGIEAARAALLRELTQVLAFDGSYVNHRHLALLIDVMTSGGAVMAVTRHGINRTDTGA 1336

Query: 1352 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI-- 1409
            LMRCSFEETV++L+DAAA AE D  RGVSEN+I+GQ+   GTG F++ LD +K   G+  
Sbjct: 1337 LMRCSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFEVHLD-QKMLMGVVS 1395

Query: 1410 -EIPLATGMMGGPAGMFFGSAATPSSIPGPPAWYPIHI-AISLLSRFTTVICIYTLKTFL 1467
                LA         +    AATP    GPP    ++I A    S+F+ +      +T  
Sbjct: 1396 SNAGLAIDSADAKGSLLAEGAATPYDT-GPPMHENVYIGAADPDSKFSPIRQATGGETPQ 1454

Query: 1468 EMKDFKKPPQKGF 1480
               D+  P   GF
Sbjct: 1455 GFTDYSGPGFGGF 1467



 Score =  144 bits (363), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 80/102 (78%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q++A VGQQ+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM
Sbjct: 692  SQMMAIVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 751

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +      + YD   +N++
Sbjct: 752  AGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSL 793



 Score =  142 bits (358), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/153 (49%), Positives = 100/153 (65%), Gaps = 4/153 (2%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + ++  + + R ++ +E+  VL F G YVN+RHLALL DVMT+ G +MA+TRHGINR DT
Sbjct: 1275 VLEVFGIEAARAALLRELTQVLAFDGSYVNHRHLALLIDVMTSGGAVMAVTRHGINRTDT 1334

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            GALMRCSFEETV++L+DAAA AE D  RGVSEN+I+GQ+   GTG F++ LD +K   G+
Sbjct: 1335 GALMRCSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFEVHLD-QKMLMGV 1393

Query: 893  ---EIPLATGMMGGPAGMFFGSAATPSSMSPQM 922
                  LA         +    AATP    P M
Sbjct: 1394 VSSNAGLAIDSADAKGSLLAEGAATPYDTGPPM 1426



 Score =  112 bits (281), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 65/84 (77%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            +E+  VL F G YVN+RHLALL DVMT+ G +MA+TRHGINR DTGALMRCSFEETV++L
Sbjct: 1290 RELTQVLAFDGSYVNHRHLALLIDVMTSGGAVMAVTRHGINRTDTGALMRCSFEETVEIL 1349

Query: 579  MDAAAHAEADPMRGYIQRRLIKAM 602
            +DAAA AE D  RG  +  ++  M
Sbjct: 1350 LDAAAFAELDDCRGVSENLILGQM 1373



 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 85/169 (50%), Gaps = 43/169 (25%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQR+L+KA+E VMV YD TVRNS+G +IQ  YGEDGL G  +E+QR+D +  S +KF 
Sbjct: 768 GYIQRKLVKALEEVMVKYDGTVRNSLGDVIQFLYGEDGLDGAHIENQRVDIITCSDEKFR 827

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVIS----ELEKEMVDHFSWKQLRRIFNEDV 707
            +YR D                  LM S   IS    +  KE+ D             DV
Sbjct: 828 RRYRVD------------------LMDSDYSISPDLLQQAKEIAD-------------DV 856

Query: 708 LRELMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
                   D    L++EWE+L EDR  LR +    E  + LP N+  ++
Sbjct: 857 --------DAQRYLDEEWEQLNEDRTFLRSVCKEDEEMMQLPINVQRIL 897



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 107/232 (46%), Gaps = 49/232 (21%)

Query: 1507 PVMGIVQDTLTAVRKMTKRDV-------FLDKVTANTAIYYDPDPQNTVIPEDQEFVNVY 1559
            P M + QD   A  K T + +        L  VT  T IYYDPD Q+TVI  D++ V  Y
Sbjct: 1047 PSMTVYQDPSIAGEKETVKQLRSAVEHTSLRSVTEATEIYYDPDIQSTVIEADRDMVESY 1106

Query: 1560 YEMPD---FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPTDKK 1616
            + +P+    D +R S WLLRI L R ++ DK                             
Sbjct: 1107 FIIPEDVNDDMSRQSKWLLRIILSRAKLLDK----------------------------N 1138

Query: 1617 LTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEED-----AVDKME 1671
            LT++ ++ KI   +  D+  IF+D+NA++ V+RIR ++   +   +++D      + ++E
Sbjct: 1139 LTVQDVASKIKEEYPRDVAVIFSDNNADEQVIRIRQIHETKADEDEDDDTEYDVTLKRLE 1198

Query: 1672 ----DDMFLRCIEETDRSFVKVDFVEPKDLVEWKTLLKQMHSDFCLAQIIKC 1719
                D + LR +   +R+F+    +    ++E  +L K     FC   +++ 
Sbjct: 1199 AHLLDTLTLRGVSGVERAFINEKTI--VRVLEDGSLRKSSADPFCKEWVLET 1248



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 37/160 (23%)

Query: 1494 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPEDQ 1553
            + P  I++PQ N P+MGIVQDTL  + K+ +RD FL K                     +
Sbjct: 434  LVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTK---------------------E 472

Query: 1554 EFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKIN--------AGFGDD 1605
            + +N+   +PD+D     P + +    R R T K++    +   +N        A  GD 
Sbjct: 473  QVMNIMMWVPDWDGVIPQPAIFK---PRPRWTGKQIISMVLPAGLNLLRLDKDKAPLGDR 529

Query: 1606 LNTP----LSPTDKKLTMEAISEK-INAGFGDDLNCIFND 1640
             + P    L     +L     S+K + A  G  ++ IFN+
Sbjct: 530  FSPPADGGLFVHGGELMFGMFSKKSVGAAGGGIIHTIFNE 569


>gi|448082723|ref|XP_004195204.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
 gi|359376626|emb|CCE87208.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
          Length = 1758

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/412 (50%), Positives = 267/412 (64%), Gaps = 55/412 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MN+L ++P+WDG +P P I+KPKPLWTGKQ+ S+ IP  +++ R         D G 
Sbjct: 549 DQVMNMLYWIPVWDGVIPPPAIVKPKPLWTGKQLLSMAIPKGIHLQRF--------DDGK 600

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              +SP D+ +++  G ++ G++ KK++G++ G L+H    E G +VC + +G+IQ VVN
Sbjct: 601 -NLLSPKDSGMLIVDGEIMFGVVDKKTVGSTGGGLIHTVMREKGPQVCAQLFGSIQKVVN 659

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 660 YWLL---------------------------------------HN-------GFSIGIGD 673

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T   +   I+ AK  V E+I  A    L+P PG TLR++FE+ V+R+LN ARD 
Sbjct: 674 TIADASTMKNVTTTIEDAKRKVQEIINDAQQNKLDPEPGMTLRESFEHNVSRVLNQARDT 733

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQQ VEGKRIPFGF  RTLPHF 
Sbjct: 734 AGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRTLPHFT 793

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 794 KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 853

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           MVHYD T RNS+G +IQ  YGEDG+ G  VE Q ID++  S + FE +YR D
Sbjct: 854 MVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQAIDSIPGSDESFERRYRID 905



 Score =  361 bits (927), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 199/476 (41%), Positives = 296/476 (62%), Gaps = 55/476 (11%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+  L K+A  NATLLFQCL+RS L ++ V E Y+L+  +FEW++GEIE +FQ++   
Sbjct: 1006 VRGDKALVKEAQNNATLLFQCLLRSRLASRRVVEEYKLNRISFEWVLGEIETQFQKSIVH 1065

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  +  Q+                 V  K +  G  R + + +  K+   P    +
Sbjct: 1066 PGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 1125

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            ++    A +  ++           ++ +A++     NV       T+ T I+YDPDP++T
Sbjct: 1126 LQKEIAADIEKAK-----------VVQSAIEHTTLKNV-------TSATEIFYDPDPRST 1167

Query: 1110 VIPEDQEFVNVYYEMPDFDPT----RISPWLLRIELDRKRMTDKKLTMEAISEKINAGFG 1165
            VI ED + V  Y+ +PD        + SPWLLR+ELDR +M DK+LTM  ++EKI+  FG
Sbjct: 1168 VIEEDYDTVEAYFAIPDEKVEESIEKQSPWLLRLELDRAKMLDKQLTMSQVAEKISQNFG 1227

Query: 1166 DDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQG 1225
            +DL  I++DD A+KL++R R++  D   + ++ DA    E+D  L+ IEA+ML  ++L+G
Sbjct: 1228 EDLFVIWSDDTADKLIIRCRVVR-DPKTLDEDADA----EEDQILKRIEAHMLESISLRG 1282

Query: 1226 IEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSN 1285
            I  I +V+M   +  S       ESGE+K   +W+LETDG +L  V++   VD  RT+SN
Sbjct: 1283 IPGITRVFMMQHKVSSPD-----ESGEYKQGQEWVLETDGVNLADVMAVPGVDATRTYSN 1337

Query: 1286 DICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1345
            +  EI  VLGIEA R ++ KE+  V+ F G YVNYRH+ALL DVMT++GHLMAITRHGIN
Sbjct: 1338 NFIEILSVLGIEATRTALFKEILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGIN 1397

Query: 1346 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1401
            R DTGALMRCSFEETV++L++AA+ AE D  RG+SEN+++GQ+  +GTG FD+++D
Sbjct: 1398 RSDTGALMRCSFEETVEILLEAASSAELDDCRGISENVMLGQMAPLGTGAFDVMVD 1453



 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/118 (55%), Positives = 93/118 (78%)

Query: 767  NENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHG 826
            + N   +  ++ + + R ++ KE+  V+ F G YVNYRH+ALL DVMT++GHLMAITRHG
Sbjct: 1336 SNNFIEILSVLGIEATRTALFKEILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHG 1395

Query: 827  INRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
            INR DTGALMRCSFEETV++L++AA+ AE D  RG+SEN+++GQ+  +GTG FD+++D
Sbjct: 1396 INRSDTGALMRCSFEETVEILLEAASSAELDDCRGISENVMLGQMAPLGTGAFDVMVD 1453



 Score =  145 bits (367), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF  RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 764  SQMSACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 823

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 824  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 865



 Score =  119 bits (298), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 93/154 (60%), Gaps = 14/154 (9%)

Query: 515  TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
            T++ KE+  V+ F G YVNYRH+ALL DVMT++GHLMAITRHGINR DTGALMRCSFEET
Sbjct: 1353 TALFKEILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEET 1412

Query: 575  VDVLMDAAAHAEADPMRGYIQRRLIKAMESVMV-HYDCTVRNSVGQLIQLR--------- 624
            V++L++AA+ AE D  RG  +  ++  M  +    +D  V + + QL             
Sbjct: 1413 VEILLEAASSAELDDCRGISENVMLGQMAPLGTGAFDVMVDDKMLQLAPSNLSNVGETGA 1472

Query: 625  YGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDP 658
            YG+DG      E++  D       +FE+   F P
Sbjct: 1473 YGDDGGATPYREYEMED----DKIQFEEGAGFSP 1502



 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G +IQ  YGEDG+ G  VE Q ID++  S + FE
Sbjct: 840 GYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQAIDSIPGSDESFE 899

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YR D  +        N  +   L+ +G                            +E+
Sbjct: 900 RRYRIDVLDP-------NRSIKESLLETG----------------------------KEI 924

Query: 712 MGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEVI 756
            G   +   L++E+ +L  DR+ LRE+ F  G+ N  LP NL  +I
Sbjct: 925 RGDVKLQKVLDEEYNQLLSDRQYLREVCFPGGDFNWPLPVNLRRII 970



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 37/156 (23%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPT----RISPWLLRIELDRKRM 1584
            L  VT+ T I+YDPDP++TVI ED + V  Y+ +PD        + SPWLLR+ELDR +M
Sbjct: 1149 LKNVTSATEIFYDPDPRSTVIEEDYDTVEAYFAIPDEKVEESIEKQSPWLLRLELDRAKM 1208

Query: 1585 TDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAE 1644
             DK+LTM  ++EKI                            +  FG+DL  I++DD A+
Sbjct: 1209 LDKQLTMSQVAEKI----------------------------SQNFGEDLFVIWSDDTAD 1240

Query: 1645 KLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            KL++R R++  D   + ++ DA    E+D  L+ IE
Sbjct: 1241 KLIIRCRVVR-DPKTLDEDADA----EEDQILKRIE 1271



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 24/129 (18%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   P QI++PQ+N+PVMGIVQDTL  VRKMT RD F++         YD       
Sbjct: 506  LSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIE---------YD------- 549

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNT 1608
                 + +N+ Y +P +D     P +++    +   T K+L   AI + I+    DD   
Sbjct: 550  -----QVMNMLYWIPVWDGVIPPPAIVK---PKPLWTGKQLLSMAIPKGIHLQRFDDGKN 601

Query: 1609 PLSPTDKKL 1617
             LSP D  +
Sbjct: 602  LLSPKDSGM 610



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 32/46 (69%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
           E+   LG +  +ARP+WML+TVL VPP  VRP++  + +AR ++ +
Sbjct: 222 EDCFRLGFNEDYARPEWMLITVLAVPPPPVRPSIAFNDTARGEDDL 267


>gi|110669652|gb|ABG81920.1| RNA polymerase II largest subunit, partial [Pleopsidium
           chlorophanum]
          Length = 1011

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/414 (51%), Positives = 264/414 (63%), Gaps = 58/414 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MNIL+++P WDG +PQP ILKP P WTGKQ+ SL+IP  +N+ R           G
Sbjct: 475 KEQVMNILLWVPDWDGVIPQPAILKPHPKWTGKQIISLVIPKGLNLIR-----------G 523

Query: 132 PYQWISPG-DTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
             + +SP  D  + V  G L+ G+  KKS+G S G ++HI F E G EV   F+   QTV
Sbjct: 524 SEEGLSPANDDGLFVHGGELMYGLFSKKSVGASGGGIIHIIFNEKGPEVAMNFFNGAQTV 583

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN WLL                                       HN       G SIGI
Sbjct: 584 VNYWLL---------------------------------------HN-------GFSIGI 597

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTI D  T  +I+ A+ K K DV E+ + A   +LEP PG  +R+TFE++V++ LN AR
Sbjct: 598 GDTIPDRNTIQQIENAVNKHKADVAEITRSATENELEPLPGMNVRETFESKVSKALNAAR 657

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           D+ G   +KSL + NN   M  +GSKGS INISQ+ A VGQQ+VEGKRIPFGF+ RTLPH
Sbjct: 658 DEAGAETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH 717

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E
Sbjct: 718 FTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALE 777

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            VM  YD TVRNS+G ++Q  YGEDGL G  +E QR+D +A S K+FE K+R D
Sbjct: 778 DVMAKYDGTVRNSLGDIVQFVYGEDGLDGSHIEAQRVDIIACSDKQFEKKFRVD 831



 Score =  144 bits (363), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/160 (49%), Positives = 99/160 (61%), Gaps = 6/160 (3%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ A VGQQ+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM
Sbjct: 690  SQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 749

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
             GREGLIDTAVKTAET  +   L +   +    YD   +N++     + V   Y     D
Sbjct: 750  AGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSL----GDIVQFVYGEDGLD 805

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDL 1168
             + I    + I     +  +KK  ++ +  K  AG   D+
Sbjct: 806  GSHIEAQRVDIIACSDKQFEKKFRVDLMDPK--AGISPDV 843



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 84/165 (50%), Gaps = 35/165 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VM  YD TVRNS+G ++Q  YGEDGL G  +E QR+D +A S K+FE
Sbjct: 766 GYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGSHIEAQRVDIIACSDKQFE 825

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+R D  + +      + DVL                                ++  E+
Sbjct: 826 KKFRVDLMDPKAG---ISPDVL--------------------------------ELAAEI 850

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
            G  +V   L++EWE+L  DR  LR+        + LP N++ ++
Sbjct: 851 GGDVEVQQYLDEEWEQLKLDRAFLRKNKHDDTEQMQLPINILRIL 895



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 41/59 (69%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+D+LSK+  +NATLLF+  +RS L  K V   Y L+  AF+ ++GEIE+RF +A V
Sbjct: 931  VRGDDKLSKEGQDNATLLFKAHLRSRLAFKRVVTEYSLNKLAFQHVLGEIESRFCRAAV 989



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  + + P  I++PQ N P+MGIVQDTL  V KM +RDVFL K      + + PD  + V
Sbjct: 433  INQLCMVPLNIVSPQRNGPLMGIVQDTLCGVYKMCRRDVFLTKEQVMNILLWVPD-WDGV 491

Query: 1549 IPE 1551
            IP+
Sbjct: 492  IPQ 494


>gi|397135902|gb|AFO11446.1| RNA polymerase I, partial [Millerozyma farinosa]
          Length = 872

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/412 (50%), Positives = 267/412 (64%), Gaps = 55/412 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MN+L ++P+WDG +P P I+KPKPLWTGKQ+ S+ IP  +++ R         D G 
Sbjct: 357 DQVMNMLYWIPVWDGVIPPPAIVKPKPLWTGKQLLSMAIPKGIHLQRF--------DDGK 408

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              +SP D+ +++  G ++ G++ KK++G++ G L+H    E G +VC + +G+IQ VVN
Sbjct: 409 -NLLSPKDSGMLIVDGEIMFGVVDKKTVGSTGGGLIHTVMREKGPQVCAQLFGSIQKVVN 467

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 468 YWLL---------------------------------------HN-------GFSIGIGD 481

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T   +   I+ AK  V E+I  A    L+P PG TLR++FE+ V+R+LN ARD 
Sbjct: 482 TIADASTMKNVTTTIEDAKRKVQEIINDAQQNKLDPEPGMTLRESFEHNVSRVLNQARDT 541

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQQ VEGKRIPFGF  RTLPHF 
Sbjct: 542 AGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRTLPHFT 601

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 602 KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 661

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           MVHYD T RNS+G +IQ  YGEDG+ G  VE Q ID++  S + FE +YR D
Sbjct: 662 MVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQAIDSIPGSDESFERRYRID 713



 Score =  145 bits (366), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF  RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 572  SQMSACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 632  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 673



 Score =  100 bits (248), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G +IQ  YGEDG+ G  VE Q ID++  S + FE
Sbjct: 648 GYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQAIDSIPGSDESFE 707

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YR D  +        N  +   L+ +G                            +E+
Sbjct: 708 RRYRIDVLDP-------NRSIKESLLETG----------------------------KEI 732

Query: 712 MGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEVI 756
            G   +   L++E+ +L  DR+ LRE+ F  G+ N  LP NL  +I
Sbjct: 733 RGDVKLQKVLDEEYNQLLSDRQYLREVCFPGGDFNWPLPVNLRRII 778



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 44/59 (74%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+  L K+A  NATLLFQCL+RS L ++ + E Y+L+  +FEW++GEIE +FQ++ V
Sbjct: 814  VRGDKALVKEAQNNATLLFQCLLRSRLASRRIIEEYKLNKISFEWVLGEIETQFQKSIV 872



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 24/126 (19%)

Query: 1492 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPE 1551
            I   P QI++PQ+N+PVMGIVQDTL  VRK+T RD F++         YD          
Sbjct: 317  ICAVPLQIVSPQSNKPVMGIVQDTLCGVRKLTLRDTFIE---------YD---------- 357

Query: 1552 DQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLS 1611
              + +N+ Y +P +D     P +++    +   T K+L   AI + I+    DD    LS
Sbjct: 358  --QVMNMLYWIPVWDGVIPPPAIVK---PKPLWTGKQLLSMAIPKGIHLQRFDDGKNLLS 412

Query: 1612 PTDKKL 1617
            P D  +
Sbjct: 413  PKDSGM 418



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 30/41 (73%)

Query: 35 LGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
          LG +  +ARP+WML+TVL VPP  VRP++  + +AR ++ +
Sbjct: 35 LGFNEDYARPEWMLITVLAVPPPPVRPSIAFNDTARGEDDL 75


>gi|259016100|gb|ACV89330.1| RNA polymerase II 215kD subunit [Ctenocephalides felis]
          Length = 221

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/267 (76%), Positives = 213/267 (79%), Gaps = 46/267 (17%)

Query: 119 RTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHE 178
           RTHSTHPD+ED GPY WISPGDTKV+VEHG L+MGILCK++LG S+GSLLHI FLELGHE
Sbjct: 1   RTHSTHPDEEDDGPYXWISPGDTKVMVEHGQLIMGILCKRTLGASAGSLLHIVFLELGHE 60

Query: 179 VCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNM 238
             GRFYGNIQTVVNNWLLLEG                                       
Sbjct: 61  TAGRFYGNIQTVVNNWLLLEG--------------------------------------- 81

Query: 239 DLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTF 298
                  HSIGIGDTIADPQTY+EIQ AIKKAKEDVIEVIQKAHNM+LEPTPGNTLRQTF
Sbjct: 82  -------HSIGIGDTIADPQTYMEIQRAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTF 134

Query: 299 ENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKR 358
           ENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKR
Sbjct: 135 ENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKR 194

Query: 359 IPFGFRKRTLPHFIKDDYGPESRGFVE 385
           IPFGFRKRTLPHFIKDDYGPESRGFVE
Sbjct: 195 IPFGFRKRTLPHFIKDDYGPESRGFVE 221



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/43 (97%), Positives = 43/43 (100%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 1051
            +QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE
Sbjct: 179  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 221


>gi|58395824|gb|AAW72740.1| RNA polymerase II largest subunit [Gautieria otthii]
          Length = 597

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/411 (51%), Positives = 270/411 (65%), Gaps = 55/411 (13%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           Q+ NIL+++P WDG +P P I+KPKPLWTGKQ+ S+ IP  ++++R    +PDD  + P 
Sbjct: 68  QVQNILLWVPDWDGTVPIPAIVKPKPLWTGKQLLSMCIPRGIDISR----NPDDHTANPV 123

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
                 D  +++E+G ++ G++ KK++G S G L+H+ F E G E C   +  +Q VVN 
Sbjct: 124 V-----DDGMLIENGDIIYGVVEKKTVGASQGGLVHVVFREKGPEACVGLFTGLQMVVNF 178

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WL                                        HN       G SIGIGDT
Sbjct: 179 WLF---------------------------------------HN-------GFSIGIGDT 192

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD QT L I   I +AK  V E++++A+   L P+PG T+R++FE++VNR LN ARD+T
Sbjct: 193 IADKQTMLIINQRITEAKTKVHEILEEAYQDRLRPSPGMTIRESFESKVNRELNVARDET 252

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G   +KSL + NN+K MVVAGSKGS INISQ+  CVGQQ+VEGKRIPFGFR RTLPHF K
Sbjct: 253 GQDVQKSLKDDNNVKQMVVAGSKGSFINISQMAVCVGQQSVEGKRIPFGFRHRTLPHFTK 312

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DDY PE+RGFVEN YL GLTP E+FFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E VM
Sbjct: 313 DDYSPEARGFVENFYLRGLTPQEYFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVM 372

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           V YD TVRNS+G L+Q  YGEDG+ G  +E Q +D   L+ K FE +YR D
Sbjct: 373 VCYDGTVRNSLGDLLQFTYGEDGMDGAFIERQSVDPYHLTDKSFERRYRVD 423



 Score =  144 bits (364), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+  CVGQQ+VEGKRIPFGFR RTLPHF KDDY PE+RGFVEN YL GLTP E+FFHAM
Sbjct: 282  SQMAVCVGQQSVEGKRIPFGFRHRTLPHFTKDDYSPEARGFVENFYLRGLTPQEYFFHAM 341

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 342  GGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSL 383



 Score = 94.7 bits (234), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 87/168 (51%), Gaps = 39/168 (23%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD TVRNS+G L+Q  YGEDG+ G  +E Q +D   L+ K FE
Sbjct: 358 GYIQRRLVKALEDVMVCYDGTVRNSLGDLLQFTYGEDGMDGAFIERQSVDPYHLTDKSFE 417

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YR D +   +  + F   VL+  +G  D                              
Sbjct: 418 RRYRVDVT---EPSKGFTSGVLQ--VGLDD------------------------------ 442

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNV--VLPCNLMEVI 756
             S D+ ++L++EW +L EDR  LRE IF S + +    LP NL  V+
Sbjct: 443 -SSLDLQAKLDEEWNQLVEDRRLLREFIFKSADPSRPHYLPVNLRRVV 489



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 37/60 (61%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   PRQII+PQ N+PVMGIVQDTL  +RK T RD FLD       + + PD   TV
Sbjct: 24   LSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGTV 83



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+D +S +   NATLLF   +RST   + V E + L+ EAFEW++GE+E +F  + V
Sbjct: 525  VRGDDPISCEMQANATLLFGMHLRSTFAARPVLEEFHLNREAFEWVLGEVETKFNHSLV 583


>gi|397135808|gb|AFO11399.1| RNA polymerase I, partial [Ogataea methanolica]
          Length = 870

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/421 (51%), Positives = 265/421 (62%), Gaps = 57/421 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MN+  ++P WDG +PQP ILKPKPLWTGKQ+ SL IP  + + R   +         
Sbjct: 357 DQVMNMCFWIPQWDGVVPQPAILKPKPLWTGKQMMSLCIPKGIFLQRLDGS--------- 407

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              +SP D+ +++  G ++ G++ K ++G ++G L+H    E G +VC + +GNIQ VVN
Sbjct: 408 --LLSPKDSGMLIVDGEIMFGVVNKATVGATAGGLIHTVMREKGPQVCAQMFGNIQKVVN 465

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 466 YWLL---------------------------------------HN-------GFSIGIGD 479

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
            IAD +T   I   I  AKE V EVI  A N  LEP PG T+R++FE +V++ILN+ARD 
Sbjct: 480 AIADTETMKTITETIGVAKEKVQEVILDAQNNILEPEPGMTVRESFEQKVSKILNEARDT 539

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ SL E NN+K MV AGSKGS INISQ+ ACVGQQ VEGKRI FGF  R+LPHF 
Sbjct: 540 AGKSAESSLKEANNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFSDRSLPHFT 599

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY  ES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 600 KDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDI 659

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MVHYD T RNS+G +IQ  YGEDG+ G  VE Q +DT+  S   FE KYR D  N   ++
Sbjct: 660 MVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQTVDTIPGSSAAFEKKYRVDLMNAEKSI 719

Query: 493 R 493
           R
Sbjct: 720 R 720



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 77/102 (75%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRI FGF  R+LPHF KDDY  ES+GFVENSYL GLTP EFFFHAM
Sbjct: 570  SQMSACVGQQIVEGKRINFGFSDRSLPHFTKDDYSAESKGFVENSYLRGLTPQEFFFHAM 629

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 630  AGREGLIDTAVKTAETGYIQRRLLKALEDIMVHYDGTTRNSL 671



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 90/167 (53%), Gaps = 38/167 (22%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G +IQ  YGEDG+ G  VE Q +DT+  S   FE
Sbjct: 646 GYIQRRLLKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQTVDTIPGSSAAFE 705

Query: 652 DKYRFDPSN-ERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRE 710
            KYR D  N E+ +R  + E       G+                              E
Sbjct: 706 KKYRVDLMNAEKSIRPDYIE------YGT------------------------------E 729

Query: 711 LMGSGDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVI 756
           ++G  ++   L++E+E+L +DR+ LR E F +GE+N  LP N+  ++
Sbjct: 730 ILGDIEIQKALDEEFEQLVKDRDYLRNECFITGENNWPLPVNIRRIV 776



 Score = 67.0 bits (162), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 40/54 (74%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRF 1006
            V G   +  +A ENATLLFQCLVRS L T+ V E +RL+ +AFEW++G IE++F
Sbjct: 812  VRGSGGILDEAQENATLLFQCLVRSRLATRRVLEEFRLNRDAFEWVIGTIEHQF 865



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   P QI++PQ+N+PVMGIVQDTL  VRKMT RD F++        ++ P   + V
Sbjct: 314  LSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFVEYDQVMNMCFWIPQ-WDGV 372

Query: 1549 IPE 1551
            +P+
Sbjct: 373  VPQ 375


>gi|448087303|ref|XP_004196296.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
 gi|359377718|emb|CCE86101.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
          Length = 1772

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/412 (50%), Positives = 268/412 (65%), Gaps = 55/412 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MN+L ++P+WDG +P P I+KPKPLWTGKQ+ S+ IP  +++ R         D G 
Sbjct: 549 DQVMNMLYWIPVWDGVIPPPAIVKPKPLWTGKQLLSMAIPKGIHLQRF--------DDGK 600

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              +SP D+ +++  G ++ G++ KK++G++ G L+H    E G +VC + +G++Q VVN
Sbjct: 601 -NLLSPKDSGMLIVDGEIMFGVVDKKTVGSTGGGLIHTVMREKGPQVCAQLFGSLQKVVN 659

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 660 YWLL---------------------------------------HN-------GFSIGIGD 673

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T   +   I+ AK+ V E+I  A    L+P PG TLR++FE+ V+R+LN ARD 
Sbjct: 674 TIADASTMKNVTTTIEDAKKKVQEIINDAQQNKLDPEPGMTLRESFEHNVSRVLNQARDT 733

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQQ VEGKRIPFGF  RTLPHF 
Sbjct: 734 AGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRTLPHFT 793

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 794 KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 853

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           MVHYD T RNS+G +IQ  YGEDG+ G  VE Q ID++  S + FE +YR D
Sbjct: 854 MVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQAIDSIPGSDETFERRYRID 905



 Score =  362 bits (928), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 199/476 (41%), Positives = 296/476 (62%), Gaps = 55/476 (11%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+  L K+A  NATLLFQCL+RS L ++ V E Y+L+  +FEW++GEIE +FQ++   
Sbjct: 1006 VRGDKALVKEAQNNATLLFQCLLRSRLASRRVIEEYKLNKISFEWVLGEIETQFQKSIVH 1065

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  +  Q+                 V  K +  G  R + + +  K+   P    +
Sbjct: 1066 PGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 1125

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            ++    A +  ++           ++ +A++     NV       T+ T I+YDPDP++T
Sbjct: 1126 LQKEIAADIEKAK-----------VVQSAIEHTTLKNV-------TSATEIFYDPDPRST 1167

Query: 1110 VIPEDQEFVNVYYEMPDF----DPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFG 1165
            VI ED + V  Y+ +PD        + SPWLLR+ELDR +M DK+LTM  ++EKI+  FG
Sbjct: 1168 VIEEDYDTVEAYFAIPDEKVEESIEKQSPWLLRLELDRAKMLDKQLTMSQVAEKISQNFG 1227

Query: 1166 DDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQG 1225
            +DL  I++DD A+KL++R R++  D   + ++ DA    E+D  L+ IEA+ML  ++L+G
Sbjct: 1228 EDLFVIWSDDTADKLIIRCRVVR-DPKTLDEDADA----EEDQILKRIEAHMLESISLRG 1282

Query: 1226 IEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSN 1285
            I  I +V+M   +  S       ESGE+K   +W+LETDG +L  V++   VD  RT+SN
Sbjct: 1283 IPGITRVFMMQHKVSSPD-----ESGEYKQGQEWVLETDGVNLADVMAVPGVDSTRTYSN 1337

Query: 1286 DICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1345
            +  EI  VLGIEA R ++ KE+  V+ F G YVNYRH+ALL DVMT++GHLMAITRHGIN
Sbjct: 1338 NFIEILSVLGIEATRTALFKEILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGIN 1397

Query: 1346 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1401
            R DTGALMRCSFEETV++L++AA+ AE D  RG+SEN+++GQ+  +GTG FD+++D
Sbjct: 1398 RSDTGALMRCSFEETVEILLEAASSAELDDCRGISENVMLGQMAPLGTGAFDVMVD 1453



 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/136 (51%), Positives = 102/136 (75%), Gaps = 3/136 (2%)

Query: 751  NLMEVIFI--LQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLAL 808
            NL +V+ +  +   + + N  +  L  ++ + + R ++ KE+  V+ F G YVNYRH+AL
Sbjct: 1319 NLADVMAVPGVDSTRTYSNNFIEILS-VLGIEATRTALFKEILNVIAFDGSYVNYRHMAL 1377

Query: 809  LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 868
            L DVMT++GHLMAITRHGINR DTGALMRCSFEETV++L++AA+ AE D  RG+SEN+++
Sbjct: 1378 LVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLEAASSAELDDCRGISENVML 1437

Query: 869  GQLPRMGTGCFDLLLD 884
            GQ+  +GTG FD+++D
Sbjct: 1438 GQMAPLGTGAFDVMVD 1453



 Score =  145 bits (367), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF  RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 764  SQMSACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 823

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 824  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 865



 Score =  120 bits (302), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/154 (45%), Positives = 93/154 (60%), Gaps = 14/154 (9%)

Query: 515  TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
            T++ KE+  V+ F G YVNYRH+ALL DVMT++GHLMAITRHGINR DTGALMRCSFEET
Sbjct: 1353 TALFKEILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEET 1412

Query: 575  VDVLMDAAAHAEADPMRGYIQRRLIKAMESVMV-HYDCTVRNSVGQLIQLR--------- 624
            V++L++AA+ AE D  RG  +  ++  M  +    +D  V + + QL             
Sbjct: 1413 VEILLEAASSAELDDCRGISENVMLGQMAPLGTGAFDVMVDDKMLQLAPSNLSNVGETGA 1472

Query: 625  YGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDP 658
            YGEDG      E++  D       +FE+   F P
Sbjct: 1473 YGEDGGATPYREYEMED----DKIQFEEGAGFSP 1502



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G +IQ  YGEDG+ G  VE Q ID++  S + FE
Sbjct: 840 GYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQAIDSIPGSDETFE 899

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YR D  +        N  +   L+ +G                            +E+
Sbjct: 900 RRYRIDVLDP-------NRSIKESLLETG----------------------------KEI 924

Query: 712 MGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEVI 756
            G   +   L++E+ +L  DR+ LRE+ F  G+ N  LP NL  +I
Sbjct: 925 RGDVKLQKVLDEEYNQLSSDRQYLREVCFPGGDYNWPLPVNLRRII 970



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 37/156 (23%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDF----DPTRISPWLLRIELDRKRM 1584
            L  VT+ T I+YDPDP++TVI ED + V  Y+ +PD        + SPWLLR+ELDR +M
Sbjct: 1149 LKNVTSATEIFYDPDPRSTVIEEDYDTVEAYFAIPDEKVEESIEKQSPWLLRLELDRAKM 1208

Query: 1585 TDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAE 1644
             DK+LTM  ++EKI                            +  FG+DL  I++DD A+
Sbjct: 1209 LDKQLTMSQVAEKI----------------------------SQNFGEDLFVIWSDDTAD 1240

Query: 1645 KLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            KL++R R++  D   + ++ DA    E+D  L+ IE
Sbjct: 1241 KLIIRCRVVR-DPKTLDEDADA----EEDQILKRIE 1271



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 24/129 (18%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   P QI++PQ+N+PVMGIVQDTL  +RKMT RD F++         YD       
Sbjct: 506  LSEICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFIE---------YD------- 549

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNT 1608
                 + +N+ Y +P +D     P +++    +   T K+L   AI + I+    DD   
Sbjct: 550  -----QVMNMLYWIPVWDGVIPPPAIVK---PKPLWTGKQLLSMAIPKGIHLQRFDDGKN 601

Query: 1609 PLSPTDKKL 1617
             LSP D  +
Sbjct: 602  LLSPKDSGM 610



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 32/46 (69%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
           E+   LG +  +ARP+WML+TVL VPP  VRP++  + +AR ++ +
Sbjct: 222 EDCFRLGFNEDYARPEWMLITVLAVPPPPVRPSIAFNDTARGEDDL 267


>gi|119643881|gb|ABL85592.1| RNA polymerase II largest subunit [Degelia plumbea]
          Length = 1002

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/421 (50%), Positives = 269/421 (63%), Gaps = 58/421 (13%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++EQ+MNIL+++P WDG +PQP ILKP+P WTGKQ+ SL+IP  +N+TR           
Sbjct: 477 SKEQVMNILLWIPDWDGILPQPAILKPRPKWTGKQIISLVIPSGLNLTRAGG-------- 528

Query: 131 GPYQWISP-GDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQT 189
              +  SP  D  ++V  G L+ G+L KKS+G +S  ++HI F E G EV  +F+   QT
Sbjct: 529 ---EGFSPLNDDGLLVSGGKLMYGLLSKKSVGATSSGIIHIIFNEKGPEVAMKFFNGAQT 585

Query: 190 VVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIG 249
           VVN WLL                                       HN       G SIG
Sbjct: 586 VVNYWLL---------------------------------------HN-------GFSIG 599

Query: 250 IGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDA 309
           IGDTI D  T  +I+ A+ K KEDV  + Q A   +LEP PG  +R+TFE++V++ LN A
Sbjct: 600 IGDTIPDRGTIKQIEDAVNKQKEDVAVITQSATANELEPLPGMNVRETFESKVSKALNKA 659

Query: 310 RDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           RD  G   +KSL + NN   M ++GSKGS INISQ+ A VGQQ+VEGKRIPFGF+ RTLP
Sbjct: 660 RDDAGTVTEKSLKDLNNATQMALSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLP 719

Query: 370 HFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 429
           HF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+
Sbjct: 720 HFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 779

Query: 430 ESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           E VM  YD TVRNS+G ++Q  YGEDGL    +E QR+D +  S ++F+ K+R D  + R
Sbjct: 780 EDVMAKYDGTVRNSLGDIVQFVYGEDGLDAVHIESQRVDIITCSDEQFKKKFRVDLMDPR 839

Query: 490 P 490
           P
Sbjct: 840 P 840



 Score =  144 bits (363), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ A VGQQ+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM
Sbjct: 693  SQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 752

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +    YD   +N++
Sbjct: 753  AGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSL 794



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 72/118 (61%), Gaps = 4/118 (3%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VM  YD TVRNS+G ++Q  YGEDGL    +E QR+D +  S ++F+
Sbjct: 769 GYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDAVHIESQRVDIITCSDEQFK 828

Query: 652 DKYR---FDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNED 706
            K+R    DP  E  +   F E V ++++G   + + L++E     + ++  R+  +D
Sbjct: 829 KKFRVDLMDPRPETSISSEFLEQV-QDMLGDSHLQAYLDEEYDQLKAAREFLRVNKQD 885



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 31/163 (19%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  + + P  I++PQ N P+MGIVQDTL  + K+ +RDVFL K                 
Sbjct: 436  INQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKLCRRDVFLSK----------------- 478

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKIN------AGF 1602
                ++ +N+   +PD+D     P +L+    R + T K++    I   +N       GF
Sbjct: 479  ----EQVMNILLWIPDWDGILPQPAILK---PRPKWTGKQIISLVIPSGLNLTRAGGEGF 531

Query: 1603 GDDLNTPLSPTDKKLTMEAISEK-INAGFGDDLNCIFNDDNAE 1644
                +  L  +  KL    +S+K + A     ++ IFN+   E
Sbjct: 532  SPLNDDGLLVSGGKLMYGLLSKKSVGATSSGIIHIIFNEKGPE 574



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+D LSK+   NATLLF+  +RS L  K +     L+  AF+ ++GEIE+RF +A V
Sbjct: 936  VRGDDALSKEGQHNATLLFKAQLRSRLAFKRLVMESSLNKLAFQHVLGEIESRFCRAAV 994


>gi|119643869|gb|ABL85591.1| RNA polymerase II largest subunit [Degelia plumbea]
          Length = 1002

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/421 (50%), Positives = 269/421 (63%), Gaps = 58/421 (13%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++EQ+MNIL+++P WDG +PQP ILKP+P WTGKQ+ SL+IP  +N+TR           
Sbjct: 477 SKEQVMNILLWIPDWDGILPQPAILKPRPKWTGKQIISLVIPSGLNLTRAGG-------- 528

Query: 131 GPYQWISP-GDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQT 189
              +  SP  D  ++V  G L+ G+L KKS+G +S  ++HI F E G EV  +F+   QT
Sbjct: 529 ---EGFSPLNDDGLLVSGGKLMYGLLSKKSVGATSSGIIHIIFNEKGPEVAMKFFNGAQT 585

Query: 190 VVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIG 249
           VVN WLL                                       HN       G SIG
Sbjct: 586 VVNYWLL---------------------------------------HN-------GFSIG 599

Query: 250 IGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDA 309
           IGDTI D  T  +I+ A+ K KEDV  + Q A   +LEP PG  +R+TFE++V++ LN A
Sbjct: 600 IGDTIPDRGTIKQIKDAVNKQKEDVAVITQSATANELEPLPGMNVRETFESKVSKALNKA 659

Query: 310 RDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
           RD  G   +KSL + NN   M ++GSKGS INISQ+ A VGQQ+VEGKRIPFGF+ RTLP
Sbjct: 660 RDDAGTVTEKSLKDLNNATQMALSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLP 719

Query: 370 HFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 429
           HF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+
Sbjct: 720 HFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 779

Query: 430 ESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
           E VM  YD TVRNS+G ++Q  YGEDGL    +E QR+D +  S ++F+ K+R D  + R
Sbjct: 780 EDVMAKYDGTVRNSLGDIVQFVYGEDGLDAVHIESQRVDIITCSDEQFKKKFRVDLMDPR 839

Query: 490 P 490
           P
Sbjct: 840 P 840



 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ A VGQQ+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM
Sbjct: 693  SQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 752

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +    YD   +N++
Sbjct: 753  AGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSL 794



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 72/118 (61%), Gaps = 4/118 (3%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VM  YD TVRNS+G ++Q  YGEDGL    +E QR+D +  S ++F+
Sbjct: 769 GYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDAVHIESQRVDIITCSDEQFK 828

Query: 652 DKYR---FDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNED 706
            K+R    DP  E  +   F E V ++++G   + + L++E     + ++  R+  +D
Sbjct: 829 KKFRVDLMDPRPETSISSEFLEQV-QDMLGDSHLQAYLDEEYDQLKAAREFLRVNKQD 885



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 31/163 (19%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  + + P  I++PQ N P+MGIVQDTL  + K+ +RDVFL K                 
Sbjct: 436  INQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKLCRRDVFLSK----------------- 478

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKIN------AGF 1602
                ++ +N+   +PD+D     P +L+    R + T K++    I   +N       GF
Sbjct: 479  ----EQVMNILLWIPDWDGILPQPAILK---PRPKWTGKQIISLVIPSGLNLTRAGGEGF 531

Query: 1603 GDDLNTPLSPTDKKLTMEAISEK-INAGFGDDLNCIFNDDNAE 1644
                +  L  +  KL    +S+K + A     ++ IFN+   E
Sbjct: 532  SPLNDDGLLVSGGKLMYGLLSKKSVGATSSGIIHIIFNEKGPE 574



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+D LSK+   NATLLF+  +RS L  K +     L+  AF+ ++GEIE+RF +A V
Sbjct: 936  VRGDDALSKEGQHNATLLFKAQLRSRLAFKRLVMESSLNKLAFQHVLGEIESRFCRAAV 994


>gi|12642610|gb|AAK00309.1|AF315819_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Botryocladia
           uvarioides]
          Length = 1712

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/415 (52%), Positives = 275/415 (66%), Gaps = 51/415 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           MMN+LM +  WDG +P+P I KP+PLWTGKQ+FSLI+P  VN+ R + THPD+E     +
Sbjct: 455 MMNLLMHVGDWDGVVPEPAIYKPRPLWTGKQIFSLILP-PVNLIRYNITHPDEEQ----E 509

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            ISPGDTKV +  G L+ GI+ KK++G+S+  L+H+ + E G +V       IQ +VN++
Sbjct: 510 EISPGDTKVYISQGQLICGIVDKKTVGSSANGLIHVTWKECGPKVTAMMISQIQVLVNHY 569

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           +L  G SIGIGDTIAD  T   +   IK AKE+V  +I+KA                   
Sbjct: 570 VLQRGQSIGIGDTIADDDTMSNVINTIKGAKEEVKMLIKKA------------------- 610

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                    QM     KE V+              PG  + ++FE +VN++LN ARDK+G
Sbjct: 611 ---------QM-----KELVL-------------LPGKGMMESFETEVNKVLNGARDKSG 643

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA+KSL + NN+K MV AGSKGS INISQ+ ACVGQQNVEGKRI +GF  RTLPHF  D
Sbjct: 644 ASAQKSLLKSNNIKRMVSAGSKGSFINISQICACVGQQNVEGKRIAYGFNGRTLPHFATD 703

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D GPESRGFVENSYL GLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME VMV
Sbjct: 704 DLGPESRGFVENSYLRGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMEDVMV 763

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
            YD TVRNS   +++  YGEDG+    +E Q + T+ +S ++  D+Y  DP++ +
Sbjct: 764 RYDGTVRNSANHVVEFLYGEDGMDATLLEDQTLRTLKMSDERLFDEYYLDPTDAK 818



 Score =  330 bits (845), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 193/491 (39%), Positives = 284/491 (57%), Gaps = 60/491 (12%)

Query: 957  DQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA-----QV 1011
            D L+ +  ENAT++FQ  VRS L  K V   +RL   AF W++GEIENRF  A     + 
Sbjct: 949  DPLTLETQENATMIFQIHVRSMLACKQVMVRHRLDINAFLWILGEIENRFLGAIAAPGEN 1008

Query: 1012 IACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGFVENS 1053
            I  +  Q+                 V  K +  G  R R + +  K    P    ++ + 
Sbjct: 1009 IGAIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVSKHTKTPSLTVYLRDK 1068

Query: 1054 YLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPE 1113
            Y               G+   I  +++          L+ VT +TAIYYDPDP+ TVI E
Sbjct: 1069 YSKD-----------KGKAKEIQASLQATN-------LYDVTTSTAIYYDPDPETTVIEE 1110

Query: 1114 DQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFN 1173
            D+E V+ +YE+ D  P+ ++PWLLRI LD++ + D+ + M+ I   +   FGDD++ + +
Sbjct: 1111 DREMVHSFYEVEDV-PSDVAPWLLRITLDKEILIDRGIGMDHIENMMQQNFGDDIHIVRS 1169

Query: 1174 DDNAEKLVLRIRIMN-------SDDSKMQDEEDA-------VDKMEDDMFLRCIEANMLS 1219
             DN E+LV+R+R+ +       ++D + ++  D         D   DD FLR +E+ +L+
Sbjct: 1170 TDNDERLVIRLRVHDEGANIKYAEDGRREEGIDTGMDIDDEDDDDTDDAFLRTLESELLN 1229

Query: 1220 DMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDP 1279
             M L GI+ I KV+M      +K++ I  E G++K   +W+L+TDG +L  V+    VD 
Sbjct: 1230 KMPLGGIKDIHKVFMR----QAKRQYIDKEYGKYKTDEEWVLDTDGVNLKAVMCHEAVDH 1285

Query: 1280 VRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1339
             RT SNDI EIF+ LGIEAVR+++ +E+  V+ F G YVNYRHL++L DVMT +GHLMAI
Sbjct: 1286 TRTMSNDIVEIFETLGIEAVREALLQEIRGVISFDGAYVNYRHLSILVDVMTYRGHLMAI 1345

Query: 1340 TRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1399
            TRHGINR DTG LM+CSFEET D+L++AA     D ++GVSENI++GQL  +GTG F ++
Sbjct: 1346 TRHGINRVDTGPLMKCSFEETTDILLEAATFGMRDNLQGVSENIVLGQLAPVGTGSFKMM 1405

Query: 1400 LDAEKCKDGIE 1410
            L+ +  +  IE
Sbjct: 1406 LNEKMLQQAIE 1416



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/159 (52%), Positives = 98/159 (61%), Gaps = 8/159 (5%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRI +GF  RTLPHF  DD GPESRGFVENSYL GLTPSEFFFHAM
Sbjct: 672  SQICACVGQQNVEGKRIAYGFNGRTLPHFATDDLGPESRGFVENSYLRGLTPSEFFFHAM 731

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   +  + YD     TV       V   Y     D
Sbjct: 732  GGREGLIDTAVKTAETGYIQRRLIKAMEDVMVRYD----GTVRNSANHVVEFLYGEDGMD 787

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
             T +    LR      +M+D++L  E   +  +A FG D
Sbjct: 788  ATLLEDQTLRT----LKMSDERLFDEYYLDPTDAKFGKD 822



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 119/222 (53%), Gaps = 33/222 (14%)

Query: 779  VLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 838
            + +VR+++ +E+  V+ F G YVNYRHL++L DVMT +GHLMAITRHGINR DTG LM+C
Sbjct: 1302 IEAVREALLQEIRGVISFDGAYVNYRHLSILVDVMTYRGHLMAITRHGINRVDTGPLMKC 1361

Query: 839  SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--- 895
            SFEET D+L++AA     D ++GVSENI++GQL  +GTG F ++L+ +  +  IE     
Sbjct: 1362 SFEETTDILLEAATFGMRDNLQGVSENIVLGQLAPVGTGSFKMMLNEKMLQQAIETEPAQ 1421

Query: 896  --LATGMMGGPAGMFFGSAATPS----------SMSPQMTPWAQSTPAYNALMSPG-AAM 942
               A G M       F  A +P+           M  + TP  ++   Y  + +P     
Sbjct: 1422 QDAADGAMDQSGTNSFDMAWSPARGDATPGLHRPMDGRTTPGLRT--GYTPMWAPSRMGS 1479

Query: 943  TPGGP---------------GFSPSVAGEDQLSKQANENATL 969
            T GGP                FSPS A      + AN    L
Sbjct: 1480 TRGGPSAFNVQQFSPSADEASFSPSPATPGNFGQNANAYTPL 1521



 Score =  103 bits (257), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 46/74 (62%), Positives = 58/74 (78%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            +E+  V+ F G YVNYRHL++L DVMT +GHLMAITRHGINR DTG LM+CSFEET D+L
Sbjct: 1311 QEIRGVISFDGAYVNYRHLSILVDVMTYRGHLMAITRHGINRVDTGPLMKCSFEETTDIL 1370

Query: 579  MDAAAHAEADPMRG 592
            ++AA     D ++G
Sbjct: 1371 LEAATFGMRDNLQG 1384



 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 29/124 (23%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L  VT +TAIYYDPDP+ TVI ED+E V+ +YE+ D  P+ ++PWLLRI LD++ + D+ 
Sbjct: 1088 LYDVTTSTAIYYDPDPETTVIEEDREMVHSFYEVEDV-PSDVAPWLLRITLDKEILIDRG 1146

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            + M+ I   +   F                            GDD++ + + DN E+LV+
Sbjct: 1147 IGMDHIENMMQQNF----------------------------GDDIHIVRSTDNDERLVI 1178

Query: 1649 RIRI 1652
            R+R+
Sbjct: 1179 RLRV 1182



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 36/181 (19%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAME VMV YD TVRNS   +++  YGEDG+    +E Q + T+ +S ++  
Sbjct: 748 GYIQRRLIKAMEDVMVRYDGTVRNSANHVVEFLYGEDGMDATLLEDQTLRTLKMSDERLF 807

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           D+Y  DP++ +     F +D                +  +D  +   +R+     +L   
Sbjct: 808 DEYYLDPTDAK-----FGKD-------------SRGRPYLDWETCDSIRQDAQAHIL--- 846

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVIFILQRWKLWGNENL 770
                    L  E++++ EDR+ LR  I  SGE+   +  N+  +I     W      N+
Sbjct: 847 ---------LRNEFQRIREDRDLLRNFIAKSGEAKRPMAVNIDRII-----WNAKQAHNI 892

Query: 771 R 771
           R
Sbjct: 893 R 893



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 39/49 (79%), Gaps = 1/49 (2%)

Query: 31  ESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           +S+ LG+DP++ RP+ +++TVLPVPPL VRP+ VMHG  RN++ + N L
Sbjct: 127 DSLALGLDPRWVRPENLILTVLPVPPLQVRPS-VMHGGLRNEDDLTNKL 174



 Score = 48.5 bits (114), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 30/43 (69%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            V+ + + P  I++PQ N+PVMGIVQDTL      T+RD F+++
Sbjct: 410  VQELMLVPHCIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFIER 452


>gi|412992604|emb|CCO18584.1| RNA polymerase II largest subunit [Bathycoccus prasinos]
          Length = 1667

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/414 (52%), Positives = 270/414 (65%), Gaps = 51/414 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++  MNI+M+L  WDGK+P+P ILKP+PLWTGKQV S+++P ++N+ RT S   D +D  
Sbjct: 501 KDVFMNIIMWLENWDGKVPKPAILKPEPLWTGKQVLSMMLP-HINLIRTSSWARDADDLD 559

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
                S  DT V +E G L+ G LCKK++G+  G L+H+ + E G          +Q +V
Sbjct: 560 ----FSVDDTGVRIERGELITGTLCKKTMGSGGGGLIHVTWEEWGPTAARNLVSEVQRLV 615

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL                                       H+       G + GI 
Sbjct: 616 NYWLL---------------------------------------HH-------GFTCGII 629

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD  T   I   I KAK DV  VI+ A N +LE  PG T++Q+FE +VN+ILN ARD
Sbjct: 630 DTIADDGTMRTINDTITKAKSDVKAVIKLAQNGELESQPGMTMQQSFEQKVNQILNKARD 689

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G +A+ SL + NN+K MV AGSKGS +NISQ+ ACVGQQNVEGKRIP+GF  R+LPHF
Sbjct: 690 DAGTAAQVSLKDSNNVKMMVQAGSKGSFLNISQMCACVGQQNVEGKRIPYGFVDRSLPHF 749

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDD+GPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME 
Sbjct: 750 SKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 809

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDP 485
           V+V YD TVRNSVG +IQ  YGEDG+   AVE Q++DT+ LS+ +FE K+R DP
Sbjct: 810 VIVKYDGTVRNSVGDVIQFLYGEDGMDATAVESQKVDTLRLSNAQFEAKFRVDP 863



 Score =  384 bits (987), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/503 (43%), Positives = 310/503 (61%), Gaps = 49/503 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G+D+LS +A  NAT+LF   VR+ L TK V + ++L   AF W++GEIE+RF+QA   
Sbjct: 968  VPGKDELSIEAQRNATILFYAQVRACLATKRVMKEHKLGVSAFNWVIGEIESRFKQALAP 1027

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
               G   V  + I     + TL  F                + AG++           +E
Sbjct: 1028 PGDGIGTVAAQSIGEPATQMTLNTF----------------HFAGVSAKNVTLGVPRLKE 1071

Query: 1073 GL-IDTAVKTAETVNVL--------------------VFLFQVTANTAIYYDPDPQNTVI 1111
             + I  ++KT      L                      L  V A T I+YDPD Q+TVI
Sbjct: 1072 IINIAKSIKTPSLTIALRKDLASDRGHAKNVQATLEYTTLASVAAMTEIWYDPDVQDTVI 1131

Query: 1112 PEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLN 1169
            P D+EFV  YYEMPD   DP RISPWLLRIEL+R+ M DKKL+M  ++E+I+  F DD++
Sbjct: 1132 PFDKEFVKSYYEMPDEEIDPNRISPWLLRIELNREMMVDKKLSMADVAERISEEFQDDIH 1191

Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAI 1229
             IFNDDN+EKL+LR+R++ + + K  D ++ V  +ED++FLR IEA +LS + L+GI  I
Sbjct: 1192 VIFNDDNSEKLILRLRLI-TPEGKAADADEGV--IEDEVFLRRIEAQLLSTLALRGIPDI 1248

Query: 1230 GKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
             KV++     ++    +   +G F+  ++W+L+T+G +L++V++  DVD  RT SN + E
Sbjct: 1249 KKVFIR----EANSTQLNEATGTFEKHSEWMLDTEGCNLLEVMAHPDVDFSRTTSNHLVE 1304

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 1349
            +  +LGIEAVR ++ KE+  V++F G YVNYRHLA+L +VMT +GHLM+ITRHGINR +T
Sbjct: 1305 VITILGIEAVRNALLKELRGVIEFDGSYVNYRHLAILVEVMTYRGHLMSITRHGINRAET 1364

Query: 1350 GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 1409
            G LMRCSFEETVD+LM+AAA +E D M GVSENI++GQ   +GTG F L L+ E  KD I
Sbjct: 1365 GPLMRCSFEETVDILMEAAAFSERDGMTGVSENIMLGQFCPVGTGEFGLHLNEEMLKDAI 1424

Query: 1410 EIPLATGMMGGPAGMFFGSAATP 1432
            ++ L     G  AGM   ++ATP
Sbjct: 1425 DLDLFGNPQGAGAGM---TSATP 1444



 Score =  161 bits (407), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/231 (42%), Positives = 136/231 (58%), Gaps = 25/231 (10%)

Query: 750  CNLMEVIFILQ-RWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLAL 808
            CNL+EV+      +    + +L  +  I+ + +VR ++ KE+  V++F G YVNYRHLA+
Sbjct: 1281 CNLLEVMAHPDVDFSRTTSNHLVEVITILGIEAVRNALLKELRGVIEFDGSYVNYRHLAI 1340

Query: 809  LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 868
            L +VMT +GHLM+ITRHGINR +TG LMRCSFEETVD+LM+AAA +E D M GVSENI++
Sbjct: 1341 LVEVMTYRGHLMSITRHGINRAETGPLMRCSFEETVDILMEAAAFSERDGMTGVSENIML 1400

Query: 869  GQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS 928
            GQ   +GTG F L L+ E  KD I++ L     G  AGM   +      M+P     A+S
Sbjct: 1401 GQFCPVGTGEFGLHLNEEMLKDAIDLDLFGNPQGAGAGMTSATPGREMVMTPGGGVGARS 1460

Query: 929  -----TPA---YNALM--SPG--------------AAMTPGGPGFSPSVAG 955
                 +PA   ++A M  SP                  +PGG G+SP+  G
Sbjct: 1461 PSFLISPARSPFDASMAFSPANYDYGQGGAGGAGLPGFSPGGAGYSPTSPG 1511



 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRIP+GF  R+LPHF KDD+GPESRGFVENSYL GLTP EFFFHAM
Sbjct: 721  SQMCACVGQQNVEGKRIPYGFVDRSLPHFSKDDFGPESRGFVENSYLRGLTPQEFFFHAM 780

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N+V
Sbjct: 781  GGREGLIDTAVKTSETGYIQRRLVKAMEDVIVKYDGTVRNSV 822



 Score =  126 bits (316), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/154 (47%), Positives = 97/154 (62%), Gaps = 33/154 (21%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTD 1586
            L  V A T I+YDPD Q+TVIP D+EFV  YYEMPD   DP RISPWLLRIEL+R+ M D
Sbjct: 1111 LASVAAMTEIWYDPDVQDTVIPFDKEFVKSYYEMPDEEIDPNRISPWLLRIELNREMMVD 1170

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL+M  ++E+                        ISE+    F DD++ IFNDDN+EKL
Sbjct: 1171 KKLSMADVAER------------------------ISEE----FQDDIHVIFNDDNSEKL 1202

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            +LR+R++ + + K  D ++ V  +ED++FLR IE
Sbjct: 1203 ILRLRLI-TPEGKAADADEGV--IEDEVFLRRIE 1233



 Score =  112 bits (281), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/74 (68%), Positives = 62/74 (83%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            KE+  V++F G YVNYRHLA+L +VMT +GHLM+ITRHGINR +TG LMRCSFEETVD+L
Sbjct: 1320 KELRGVIEFDGSYVNYRHLAILVEVMTYRGHLMSITRHGINRAETGPLMRCSFEETVDIL 1379

Query: 579  MDAAAHAEADPMRG 592
            M+AAA +E D M G
Sbjct: 1380 MEAAAFSERDGMTG 1393



 Score =  111 bits (277), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 89/170 (52%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME V+V YD TVRNSVG +IQ  YGEDG+   AVE Q++DT+ LS+ +FE
Sbjct: 797 GYIQRRLVKAMEDVIVKYDGTVRNSVGDVIQFLYGEDGMDATAVESQKVDTLRLSNAQFE 856

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+R DP                ++ G  D    L  E  +  S  Q +R          
Sbjct: 857 AKFRVDP----------------DVPGWND--GWLSDERAEAISRDQEKRQL-------- 890

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                    L+ EWE L  DR+ LR   ++G+  V LP NL  +I+  Q+
Sbjct: 891 ---------LDLEWETLLSDRDNLRYTLANGDPGVHLPVNLKRIIWNAQK 931



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 30/43 (69%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            V  + + P+ I++PQ N+PVM IVQDTL   RKMT R+ F+ K
Sbjct: 459  VAELMMVPKMIVSPQANKPVMAIVQDTLLGCRKMTSRETFIKK 501


>gi|390135418|gb|AFL56691.1| RNA polymerase I, partial [Candida sp. NCAIM Y.01949]
          Length = 586

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/422 (50%), Positives = 269/422 (63%), Gaps = 55/422 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           EQ+MNIL ++P WDG +PQP ILKPKPLWTGKQ+ SL IP  + + R    +P       
Sbjct: 81  EQVMNILFWVPHWDGVVPQPAILKPKPLWTGKQMVSLCIPKGIFLQRFDENNP------- 133

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              ISP D  +++  G ++ G++ KK++G + G L+H    E G +VC  F+GN+Q VVN
Sbjct: 134 --LISPKDNGMLIAKGEIMYGVVDKKTVGATGGGLIHTIMREKGPQVCCNFFGNLQKVVN 191

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 192 FWLL---------------------------------------HN-------GFSIGIGD 205

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T  +I   I +AK+ V E+I +A +  L P PG TLR++FE+ V+R+LN ARD 
Sbjct: 206 TIADGATMRDIANTISEAKQKVQEIILEAQSNKLSPEPGMTLRESFEHNVSRVLNQARDT 265

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ SL E NN+K MV+AGSKGS INIS + ACVGQQ VEGKRIPFGF  R+LPHF 
Sbjct: 266 AGRSAEMSLKELNNVKQMVIAGSKGSFINISLMSACVGQQIVEGKRIPFGFADRSLPHFT 325

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 326 KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 385

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MV YD + RNS+G +IQ  YGEDG+ G  VE Q IDT+  + + FE +Y  +  +   +L
Sbjct: 386 MVQYDGSTRNSLGDVIQFVYGEDGVDGTQVEKQTIDTIPGTDESFERRYHINLMDGSKSL 445

Query: 493 RN 494
           ++
Sbjct: 446 KS 447



 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/98 (67%), Positives = 75/98 (76%)

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 1072
            ACVGQQ VEGKRIPFGF  R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GRE
Sbjct: 300  ACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGRE 359

Query: 1073 GLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 360  GLIDTAVKTAETGYIQRRLVKALEDIMVQYDGSTRNSL 397



 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 89/166 (53%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MV YD + RNS+G +IQ  YGEDG+ G  VE Q IDT+  + + FE
Sbjct: 372 GYIQRRLVKALEDIMVQYDGSTRNSLGDVIQFVYGEDGVDGTQVEKQTIDTIPGTDESFE 431

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +Y  +  +        ++ +   L+ SG+                            E+
Sbjct: 432 RRYHINLMDG-------SKSLKSSLLESGN----------------------------EI 456

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVI 756
           +G  ++   L++E+ +L +DR+ LRE +F++G+ N  LP NL  V+
Sbjct: 457 LGDIELQRILDEEYNQLLDDRKFLREFVFTNGDHNWPLPVNLRRVV 502



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 24/124 (19%)

Query: 1494 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPEDQ 1553
            + P QI++PQ+N+PVMGIVQDTL  +RK+TKRD F+                     E +
Sbjct: 43   MVPLQIVSPQSNKPVMGIVQDTLCGIRKLTKRDTFV---------------------EFE 81

Query: 1554 EFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPT 1613
            + +N+ + +P +D     P +L+    +   T K++    I + I     D+ N  +SP 
Sbjct: 82   QVMNILFWVPHWDGVVPQPAILK---PKPLWTGKQMVSLCIPKGIFLQRFDENNPLISPK 138

Query: 1614 DKKL 1617
            D  +
Sbjct: 139  DNGM 142



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 35/49 (71%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 1001
            + GE +L  +A  NA+ LFQCLVRS L TK V E YRL+  AF+W++GE
Sbjct: 538  IRGEGELLAEAQANASYLFQCLVRSRLATKRVIEEYRLNRVAFDWVLGE 586


>gi|194460416|gb|ACF71882.1| RNA polymerase II [Euglossa sp. EU45]
          Length = 230

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/274 (74%), Positives = 215/274 (78%), Gaps = 46/274 (16%)

Query: 88  KMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEH 147
           KMPQPCILKPKPLWTGK  FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEH
Sbjct: 1   KMPQPCILKPKPLWTGKTNFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEH 60

Query: 148 GSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDT 207
           G L+MGILCKK+LGTS+GSLLHIC LELGHEV GRFYGNIQTV+NNWLLLEGHSIGIGDT
Sbjct: 61  GELIMGILCKKTLGTSAGSLLHICMLELGHEVXGRFYGNIQTVINNWLLLEGHSIGIGDT 120

Query: 208 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAI 267
           IADPQTYLEIQ AIK A +DVIEVIQKAHNM+LEPTPG                      
Sbjct: 121 IADPQTYLEIQKAIKXAXKDVIEVIQKAHNMELEPTPG---------------------- 158

Query: 268 KKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNL 327
                                   NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNL
Sbjct: 159 ------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNL 194

Query: 328 KAMVVAGSKGSNINISQVIACVGQQNVEGKRIPF 361
           KAMVV+GSKGSNIN   VIACVGQQNVEGKRIPF
Sbjct: 195 KAMVVSGSKGSNINXXXVIACVGQQNVEGKRIPF 228


>gi|119643888|gb|ABL85593.1| RNA polymerase II largest subunit [Protopannaria pezizoides]
          Length = 1016

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/420 (50%), Positives = 267/420 (63%), Gaps = 56/420 (13%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++EQ+MNIL+++P WDG +PQP ILKP+P WTGKQ+ SL++P  +N+TR     P  E  
Sbjct: 477 SKEQVMNILLWVPDWDGILPQPAILKPRPKWTGKQIISLVVPAGLNLTR-----PSSEGF 531

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
            P       D  ++V  G L+ G+L KKS+G +S  ++H+ F E G E    F+   QTV
Sbjct: 532 SPVN-----DDGLLVSGGKLMYGLLNKKSVGATSSGIIHVIFNEKGSEAAMNFFNGAQTV 586

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN WLL                                       HN       G SIGI
Sbjct: 587 VNYWLL---------------------------------------HN-------GFSIGI 600

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTI D  T  +I+ A+ K KEDV E+ + A   +LEP PG  +R+TFE++V++ LN AR
Sbjct: 601 GDTIPDKNTIQQIEDAVNKQKEDVAEITRSATENELEPLPGMNVRETFESKVSKALNKAR 660

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           D  G   +KSL + NN   M ++GSKGS INISQ+ A VGQQ+VEGKRIPFGF+ RTLPH
Sbjct: 661 DDAGTVTEKSLKDLNNATQMALSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH 720

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F KDDY PES+GFVENSYL GLTP+EFFFHA  GREGLIDTAVKTAETGYIQR L+KA+E
Sbjct: 721 FTKDDYSPESKGFVENSYLRGLTPTEFFFHATAGREGLIDTAVKTAETGYIQRCLVKALE 780

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
            VM  YD TVRNS+G ++Q  YGEDGL G  +E QR+D +  S ++FE KYR D  + RP
Sbjct: 781 DVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIESQRVDIITCSDEQFERKYRVDVMDPRP 840



 Score =  140 bits (354), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 78/102 (76%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ A VGQQ+VEGKRIPFGF+ RTLPHF KDDY PES+GFVENSYL GLTP+EFFFHA 
Sbjct: 693  SQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESKGFVENSYLRGLTPTEFFFHAT 752

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +    YD   +N++
Sbjct: 753  AGREGLIDTAVKTAETGYIQRCLVKALEDVMAKYDGTVRNSL 794



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 80/165 (48%), Gaps = 33/165 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQR L+KA+E VM  YD TVRNS+G ++Q  YGEDGL G  +E QR+D +  S ++FE
Sbjct: 769 GYIQRCLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIESQRVDIITCSDEQFE 828

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KYR D  + R    I  E                                F E    +L
Sbjct: 829 RKYRVDVMDPRPEATISPE--------------------------------FLEQA-HDL 855

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
            G  +V +  ++E+E+L   R+ LR+        + LP N++ ++
Sbjct: 856 TGDSEVQAHFDEEYEQLQAARDFLRKNKQDDNDQLQLPINVIRIL 900



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 51/213 (23%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  + + P  I++PQ N P+MGIVQDTL  + KM +RDVFL K                 
Sbjct: 436  INQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLSK----------------- 478

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKIN------AGF 1602
                ++ +N+   +PD+D     P +L+    R + T K++    +   +N       GF
Sbjct: 479  ----EQVMNILLWVPDWDGILPQPAILK---PRPKWTGKQIISLVVPAGLNLTRPSSEGF 531

Query: 1603 GDDLNTPLSPTDKKLTMEAISEK-INAGFGDDLNCIFNDDNAE---------KLVLRIRI 1652
                +  L  +  KL    +++K + A     ++ IFN+  +E         + V+   +
Sbjct: 532  SPVNDDGLLVSGGKLMYGLLNKKSVGATSSGIIHVIFNEKGSEAAMNFFNGAQTVVNYWL 591

Query: 1653 MNS-----------DDSKMQDEEDAVDKMEDDM 1674
            +++           D + +Q  EDAV+K ++D+
Sbjct: 592  LHNGFSIGIGDTIPDKNTIQQIEDAVNKQKEDV 624



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+D LS++A  NAT+LF+  +RS L  K +     L+  AF+ ++GEIE+RF +A V
Sbjct: 936  VRGDDDLSREAQHNATMLFKAQLRSRLAFKRLVMEASLNKLAFQHVLGEIESRFCRAAV 994


>gi|397135934|gb|AFO11462.1| RNA polymerase I, partial [Candida petrohuensis]
          Length = 868

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/412 (51%), Positives = 264/412 (64%), Gaps = 55/412 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MN+L ++P WDG +PQP +LKPKPLWTGKQ+ SL IP  + M R    +P       
Sbjct: 357 DQVMNLLFWIPDWDGVVPQPAVLKPKPLWTGKQIVSLCIPKGIFMQRFDDQNP------- 409

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
               SP D  +++  G ++ G++ KK++G ++G L+H    E G ++C  F+GN+Q VVN
Sbjct: 410 --ITSPKDNGMLIAKGEVIYGVVDKKTVGATAGGLIHTIMREKGPQICCNFFGNLQKVVN 467

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 468 YWLL---------------------------------------HN-------GFSIGIGD 481

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T  +I   I +AK  V E+I +A    L P PG TLR++FE+ V+R+LN ARD 
Sbjct: 482 TIADAATMKDITNTIAEAKNKVQEIILEAQANKLAPEPGMTLRESFEHNVSRVLNQARDT 541

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ SL E NN+K MV+AGSKGS INISQ+ ACVGQQ VEGKRIPFGF+ R+LPHF 
Sbjct: 542 AGRSAEMSLKELNNVKQMVIAGSKGSFINISQMSACVGQQIVEGKRIPFGFQDRSLPHFT 601

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDD+ PES+GF+ENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E V
Sbjct: 602 KDDHSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDV 661

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           MV YD T RNS+G +IQ  YGEDGL G  VE Q +DT+  S + F  ++R D
Sbjct: 662 MVQYDGTTRNSLGDVIQFVYGEDGLDGTQVEKQTVDTIPGSDEAFVKRFRID 713



 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF+ R+LPHF KDD+ PES+GF+ENSYL GLTP EFFFHAM
Sbjct: 572  SQMSACVGQQIVEGKRIPFGFQDRSLPHFTKDDHSPESKGFIENSYLRGLTPQEFFFHAM 631

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 632  AGREGLIDTAVKTAETGYIQRRLVKALEDVMVQYDGTTRNSL 673



 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD T RNS+G +IQ  YGEDGL G  VE Q +DT+  S + F 
Sbjct: 648 GYIQRRLVKALEDVMVQYDGTTRNSLGDVIQFVYGEDGLDGTQVEKQTVDTIPGSDEAFV 707

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            ++R D  +        ++ +    + SG+                            E+
Sbjct: 708 KRFRIDLMDA-------SKSIKTNYLESGN----------------------------EI 732

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVI 756
           +G   + + L++E+++L +DR  LR  +F++G+ N  LP N   ++
Sbjct: 733 LGDVALQNILDEEYQQLVDDRNTLRSFVFTNGDHNWPLPVNFRRIV 778



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 39/55 (70%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQ 1007
            V GE +L+K A  NA+ LFQCLVRS L  K V E ++L+  AFEW +GEIE++ Q
Sbjct: 814  VRGEGRLTKDAQANASYLFQCLVRSRLACKRVIEEFKLNRIAFEWXLGEIESQLQ 868



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 24/124 (19%)

Query: 1494 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPEDQ 1553
            + P QII+PQ+N+PVMGIVQDTL  +RK+TKRD F+                     E  
Sbjct: 319  MVPLQIISPQSNKPVMGIVQDTLCGIRKLTKRDTFV---------------------EFD 357

Query: 1554 EFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPT 1613
            + +N+ + +PD+D     P +L+    +   T K++    I + I     DD N   SP 
Sbjct: 358  QVMNLLFWIPDWDGVVPQPAVLK---PKPLWTGKQIVSLCIPKGIFMQRFDDQNPITSPK 414

Query: 1614 DKKL 1617
            D  +
Sbjct: 415  DNGM 418


>gi|119643502|gb|ABL85573.1| RNA polymerase II largest subunit [Lecidea fuscoatra]
          Length = 1016

 Score =  412 bits (1058), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/420 (50%), Positives = 269/420 (64%), Gaps = 58/420 (13%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MNIL+++P WDG +PQP ILKP+P WTGKQ+ SL++P  +N+TR  S         
Sbjct: 478 KEQVMNILLWVPDWDGVIPQPAILKPRPKWTGKQIISLVVPPGLNLTRFSS--------- 528

Query: 132 PYQWISP-GDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
             + + P  D  ++V  G L+ G+  KKS+G +SG ++HI F E G E    F+   QTV
Sbjct: 529 --EGLCPINDDGLMVSGGELMYGLFSKKSVGAASGGVIHIIFNEKGPEAATNFFNGAQTV 586

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN+WLL                                       HN       G SIGI
Sbjct: 587 VNHWLL---------------------------------------HN-------GFSIGI 600

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTI D  T  +I+ A+ K K DV E+ + A   +LEP PG  +R+TFE++V++ LN AR
Sbjct: 601 GDTIPDRNTIKQIEDAVSKQKADVAEITRSATENELEPLPGVNVRETFESKVSKALNKAR 660

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           D  G   ++SL + NN   M  +GSKGS INISQ+ A VGQQ+VEGKRIPFGF+ RTLPH
Sbjct: 661 DDAGTVTEESLKDLNNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH 720

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E
Sbjct: 721 FTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALE 780

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
            VM  YD TVRNS+G ++Q  YGEDGL G  +E Q++D +  SH++FE K+R D  + RP
Sbjct: 781 DVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIEPQKLDIITCSHEQFEQKFRVDLMDPRP 840



 Score =  146 bits (368), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/131 (57%), Positives = 87/131 (66%), Gaps = 4/131 (3%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ A VGQQ+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM
Sbjct: 693  SQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 752

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
             GREGLIDTAVKTAET  +   L +   +    YD   +N++     + V   Y     D
Sbjct: 753  AGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSL----GDIVQFVYGEDGLD 808

Query: 1129 PTRISPWLLRI 1139
               I P  L I
Sbjct: 809  GVHIEPQKLDI 819



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 33/165 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VM  YD TVRNS+G ++Q  YGEDGL G  +E Q++D +  SH++FE
Sbjct: 769 GYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIEPQKLDIITCSHEQFE 828

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+R D  + R    I           S D + +                        E+
Sbjct: 829 QKFRVDLMDPRPEASI-----------SPDYLEQAN----------------------EI 855

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
            G  +V S L++E+E+L   R+ LR+        + LP N++ +I
Sbjct: 856 AGDLEVQSFLDEEFEQLQAARDFLRKNKQDDNEQLQLPINVLRII 900



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  + + P  I++PQ N P+MGIVQDTL  + KM +RDVFL K      + + PD  + V
Sbjct: 436  INQLCMVPLNIVSPQRNGPLMGIVQDTLAGIYKMCRRDVFLTKEQVMNILLWVPD-WDGV 494

Query: 1549 IPE 1551
            IP+
Sbjct: 495  IPQ 497



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 40/59 (67%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+D+LS +A  NATLLF+  +RS L  K + +   L+  AF+ ++GEIE+RF +A V
Sbjct: 936  VRGDDELSIEAQHNATLLFKAQLRSRLAFKRLVKENSLNKLAFQHIIGEIESRFCRAAV 994


>gi|397135932|gb|AFO11461.1| RNA polymerase I, partial [Candida blankii]
          Length = 872

 Score =  412 bits (1058), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/412 (51%), Positives = 266/412 (64%), Gaps = 55/412 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MNIL ++P W+G +PQP ILKPKPLWTGKQ+ SL IP  + + R       DE +  
Sbjct: 357 DQVMNILFWVPQWNGIVPQPAILKPKPLWTGKQMVSLTIPSGIFLQRF------DEGT-- 408

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
             W+SP D  +++  G ++ G + K ++G++ G L+H    E G +VC  F+G +Q VVN
Sbjct: 409 -TWLSPKDNGMLIAKGEIVYGAVDKATVGSTGGGLIHTIMREKGPQVCCNFFGAVQKVVN 467

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 468 FWLL---------------------------------------HN-------GFSIGIGD 481

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T  +I  AI +AK+ V   I++AH   L+   G TLR+TFE +V   LN+ARD+
Sbjct: 482 TIADSATMRDITNAISEAKQAVAGFIEEAHQNKLKQAAGMTLRETFEQKVMVALNEARDQ 541

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G S++ SLTE NN+K MVV+GSKGS INISQ+ ACVGQQ VEGKRIPFGF  R+LPHF 
Sbjct: 542 AGKSSQVSLTEKNNVKQMVVSGSKGSFINISQMSACVGQQVVEGKRIPFGFADRSLPHFT 601

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDD+GPESRGF+ENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 602 KDDFGPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 661

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           MV YD T RNS+G +IQ  YGEDGL G  VE Q IDT+  S + F+ +YR D
Sbjct: 662 MVQYDGTTRNSLGDIIQFLYGEDGLDGAQVEKQPIDTIPGSDEAFDKRYRID 713



 Score =  145 bits (366), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF  R+LPHF KDD+GPESRGF+ENSYL GLTP EFFFHAM
Sbjct: 572  SQMSACVGQQVVEGKRIPFGFADRSLPHFTKDDFGPESRGFIENSYLRGLTPQEFFFHAM 631

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 632  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVQYDGTTRNSL 673



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 87/166 (52%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MV YD T RNS+G +IQ  YGEDGL G  VE Q IDT+  S + F+
Sbjct: 648 GYIQRRLVKALEDIMVQYDGTTRNSLGDIIQFLYGEDGLDGAQVEKQPIDTIPGSDEAFD 707

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YR D  +         + +   L+ SG+                            E+
Sbjct: 708 KRYRIDLMDS-------TKSIKPSLLESGN----------------------------EI 732

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVI 756
           +G  ++   L++E+E+L +DR+ LR  +F +GE    LP N+  V+
Sbjct: 733 LGDVELQKLLDEEYEQLLDDRKNLRTFVFENGEHVWPLPVNIRRVV 778



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 41/59 (69%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+   S +A E+A  LF+CLVRS L  + + E YRL+  AFEW++GEIE++F ++ V
Sbjct: 814  VRGQGTTSGEAQEDAVYLFRCLVRSRLAARRIIEEYRLNKVAFEWVLGEIESQFARSIV 872



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   P QI++PQ+N+PVMGIVQDTL  +RK+T+RD FL+       +++ P   N +
Sbjct: 314  LSQIAAVPLQIVSPQSNKPVMGIVQDTLCGIRKLTRRDTFLEYDQVMNILFWVPQ-WNGI 372

Query: 1549 IPE 1551
            +P+
Sbjct: 373  VPQ 375


>gi|336041421|gb|AEH95288.1| RNA polymerase II largest subunit [Malawimonas californiana]
          Length = 1014

 Score =  412 bits (1058), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/403 (52%), Positives = 270/403 (66%), Gaps = 54/403 (13%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           +MN+LM+L  ++GK+P+P +LKPK LWTGKQ+FS++IP  VN+ R  +  P+ E +  + 
Sbjct: 463 VMNVLMWLSTFEGKVPKPAMLKPKVLWTGKQIFSMLIPP-VNLLRKSAQAPERELNEEFT 521

Query: 135 WISPGDTKVV----VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           +    DT+V     +E+G ++ GI+CK+++G+SSGSL+H+ + E GHE    F  ++Q V
Sbjct: 522 YT---DTRVCSLVCIENGEVISGIICKQTVGSSSGSLVHVVWNEHGHEATRNFLDSVQAV 578

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN WLL                                              + G S+GI
Sbjct: 579 VNQWLL----------------------------------------------SRGFSVGI 592

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIAD +T  +I   I  AK  V  +I++A N +LEP PG TL +TFE++VN  LN AR
Sbjct: 593 GDTIADKETMQQITRTIAAAKAQVASLIKQAQNHNLEPQPGRTLMETFESKVNSALNTAR 652

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           DK G SA++SL   NN+K MV AGSKGS INI+Q+IACVGQQNVEGKRIP+GFR RTLPH
Sbjct: 653 DKAGKSAEQSLRSSNNVKEMVTAGSKGSFINIAQMIACVGQQNVEGKRIPYGFRNRTLPH 712

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F+  DY PE+RGFVENSYL GL P EFFFHAMGGREGLIDTAVKT+ETGYIQRRLIKAME
Sbjct: 713 FVAADYSPEARGFVENSYLRGLNPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLIKAME 772

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALS 473
            VMV YD TVRNS+G +IQ  YGEDG  G A+E Q +DT+ ++
Sbjct: 773 DVMVRYDGTVRNSLGDVIQFLYGEDGFDGTAIETQFLDTMFMN 815



 Score =  151 bits (382), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/191 (45%), Positives = 107/191 (56%), Gaps = 11/191 (5%)

Query: 954  AGEDQLSKQANENATLLFQCLVRSTLCT------KLVAENYRLSSEAFEWLVGEIENRFQ 1007
            A    L  Q        F+  V S L T      K   ++ R S+   E +    +  F 
Sbjct: 623  AQNHNLEPQPGRTLMETFESKVNSALNTARDKAGKSAEQSLRSSNNVKEMVTAGSKGSFI 682

Query: 1008 Q-AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFH 1066
              AQ+IACVGQQNVEGKRIP+GFR RTLPHF+  DY PE+RGFVENSYL GL P EFFFH
Sbjct: 683  NIAQMIACVGQQNVEGKRIPYGFRNRTLPHFVAADYSPEARGFVENSYLRGLNPQEFFFH 742

Query: 1067 AMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD 1126
            AMGGREGLIDTAVKT+ET  +   L +   +  + YD   +N++     + +   Y    
Sbjct: 743  AMGGREGLIDTAVKTSETGYIQRRLIKAMEDVMVRYDGTVRNSL----GDVIQFLYGEDG 798

Query: 1127 FDPTRISPWLL 1137
            FD T I    L
Sbjct: 799  FDGTAIETQFL 809



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 86/171 (50%), Gaps = 30/171 (17%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAME VMV YD TVRNS+G +IQ  YGEDG  G A+E Q +DT+ ++    E
Sbjct: 761 GYIQRRLIKAMEDVMVRYDGTVRNSLGDVIQFLYGEDGFDGTAIETQFLDTMFMNDMYVE 820

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
              R       Q R      +L E++   D+ S    E +D   W   R           
Sbjct: 821 IDVR---QTFAQTRDSPENYLLPEVL--DDIRS--NAEYMDVRWWCATR----------- 862

Query: 712 MGSGDVISELEKEWEKLCEDREALR-EIFSSG----ESNVVLPCNLMEVIF 757
                    L++E+++L  DREALR ++F+       +   LP NL  +I+
Sbjct: 863 -------WALDREYQRLLSDREALRKQVFAHSLVPNSNKWPLPVNLKRIIW 906



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 42/57 (73%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA 1009
            V G D ++++A EN+TLLF   +RSTL +K V   ++L+SE+F WL+GEI+ RF+Q 
Sbjct: 942  VPGTDPIAREAQENSTLLFLIQLRSTLASKRVIHEFKLTSESFPWLLGEIQARFKQG 998



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 33/43 (76%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            +E I + PRQI++PQ N+PVMGIVQD+L   +  TKRD F+++
Sbjct: 418  IEEIMMVPRQIVSPQANKPVMGIVQDSLLGTKLFTKRDTFIER 460



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 11/69 (15%)

Query: 5   LTPKITANHVSNTSVYAWYVVPYPYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVV 64
           LTP+   N + N S           E+S  +G +P  ARP+WML TVLPVPP +VRP++V
Sbjct: 118 LTPEKVYNILKNVS----------DEDSKAMGFNPVLARPEWMLTTVLPVPPPAVRPSIV 167

Query: 65  MHGSARNQE 73
           M  SAR  E
Sbjct: 168 MD-SARAAE 175


>gi|170652075|gb|ACB21814.1| RNA polymerase II [Melipona compressipes interrupta]
          Length = 218

 Score =  411 bits (1057), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/264 (76%), Positives = 213/264 (80%), Gaps = 46/264 (17%)

Query: 88  KMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEH 147
           KMPQPCILKPKPLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED GPY+WISPGDTKV+VEH
Sbjct: 1   KMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEH 60

Query: 148 GSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDT 207
           G L+MGILCKK+LGTS+GSLLHIC LELGHEVCGRFYGNIQTV+NNWLLLEGHSIGIGDT
Sbjct: 61  GELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDT 120

Query: 208 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAI 267
           IADPQTYLEIQ AI+KAKEDVIEVIQKAHNM+LEPTPG                      
Sbjct: 121 IADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPG---------------------- 158

Query: 268 KKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNL 327
                                   NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNL
Sbjct: 159 ------------------------NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNL 194

Query: 328 KAMVVAGSKGSNINISQVIACVGQ 351
           KAMVV+GSKGSNINISQVIACVGQ
Sbjct: 195 KAMVVSGSKGSNINISQVIACVGQ 218


>gi|120561213|gb|ABM26992.1| RNA polymerase II largest subunit, partial [Capniomyces stellatus]
          Length = 1024

 Score =  411 bits (1056), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/421 (49%), Positives = 267/421 (63%), Gaps = 50/421 (11%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           + +M++L+ +P WDG +P PCILKP+PLW+GKQ+FSLIIP  +N       HPD+E +  
Sbjct: 483 DMVMSLLLKVPGWDGLIPTPCILKPQPLWSGKQIFSLIIPKGINCYTFFKDHPDNETA-- 540

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
             W SPGD++VV+E+G LL GI+CK+++G   G ++H+ F ELG E    F+G  Q VVN
Sbjct: 541 --WCSPGDSRVVIENGELLSGIICKQTVGAVRGGIVHVIFNELGSEAAKIFFGGTQRVVN 598

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            W+L                                              + G SIGIGD
Sbjct: 599 LWML----------------------------------------------SNGFSIGIGD 612

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD      +   I ++   V E+I+      L+  PG TL++TFE+  N  LN ARD 
Sbjct: 613 TIADDSAMESVGNIITESYMRVDEMIKDTIEDRLDCLPGMTLKETFESGTNLELNRARDL 672

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G S +  L E NN++ MVV+GSKGS IN+SQ+ A VGQQNVEG+RIPFGFR RTLPHF 
Sbjct: 673 AGKSVQTRLKECNNVRKMVVSGSKGSYINVSQMTAAVGQQNVEGRRIPFGFRNRTLPHFT 732

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY P+SRGFVENSYL GLTP EF+FHAMGGREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 733 KDDYSPQSRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDI 792

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MVHYD TVRNS+G +I+  YG DG+    +E+QR+ T+  S  +FE  YR D  +   + 
Sbjct: 793 MVHYDGTVRNSLGSIIEFAYGHDGMDAGYLENQRLTTLRCSDARFEGVYRVDVMDASKSF 852

Query: 493 R 493
           R
Sbjct: 853 R 853



 Score =  149 bits (377), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ A VGQQNVEG+RIPFGFR RTLPHF KDDY P+SRGFVENSYL GLTP EF+FHAM
Sbjct: 703  SQMTAAVGQQNVEGRRIPFGFRNRTLPHFTKDDYSPQSRGFVENSYLRGLTPQEFYFHAM 762

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 763  GGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTVRNSL 804



 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 48/66 (72%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD TVRNS+G +I+  YG DG+    +E+QR+ T+  S  +FE
Sbjct: 779 GYIQRRLVKALEDIMVHYDGTVRNSLGSIIEFAYGHDGMDAGYLENQRLTTLRCSDARFE 838

Query: 652 DKYRFD 657
             YR D
Sbjct: 839 GVYRVD 844



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G D+LS +A  NA L+ Q  +R+TL  K V E Y L + AF+W++GEIE RF++A V
Sbjct: 947  VRGNDKLSIEAQNNAILVLQIHLRATLSPKRVIEEYHLDANAFDWVIGEIETRFKRALV 1005



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 54/81 (66%), Gaps = 1/81 (1%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFLPIWDGKM 89
           E+++ +G++ +FARPDW+++TV+PV P+SVRP++ +  + ++++ +   L  +   + ++
Sbjct: 156 EDAVAMGLNVEFARPDWLVITVMPVAPMSVRPSIQVDATRQSEDDLTYKLNDILKANARV 215

Query: 90  PQPCILKPKPLWTGKQVFSLI 110
            + C L+  PL   ++  SL+
Sbjct: 216 -RSCELEGAPLHIIEEFESLL 235



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 30/41 (73%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 1529
            +  + + P+QI++PQ N+PVMGIVQDTL A+   TKRD  +
Sbjct: 440  IRELCMVPKQIVSPQANKPVMGIVQDTLCALLMFTKRDTLM 480


>gi|113957452|gb|ABI49113.1| RNA polymerase II largest subunit [Pseudocyphellaria anomala]
          Length = 997

 Score =  411 bits (1056), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/420 (50%), Positives = 266/420 (63%), Gaps = 58/420 (13%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MNIL+++P W G +PQP ILKP+P WTGKQ+ SL++P  +N++R+ S         
Sbjct: 459 KEQVMNILLWVPDWGGVLPQPAILKPRPKWTGKQIISLVVPPGLNLSRSSS--------- 509

Query: 132 PYQWISP-GDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
             +  SP  D  ++V  G L+ G+  KKS+G +SG ++HI F E G E    F+   QTV
Sbjct: 510 --EGFSPLNDDGLLVSGGELMYGLFNKKSVGATSGGIIHIIFNEKGPEAAMNFFNGAQTV 567

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN WLL  G SIGIGDTI D  T   I+ A+ K KEDV E+ + A   DLEP PG ++  
Sbjct: 568 VNYWLLHNGFSIGIGDTIPDRNTIQRIENAVNKQKEDVAEITRSATENDLEPLPGMNV-- 625

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
                                                       R+TFE++V++ LN AR
Sbjct: 626 --------------------------------------------RETFESKVSKALNKAR 641

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           D  G   ++SL + NN   M  +GSKGS INISQ+ A VGQQ+VEGKRIPFGF+ RTLPH
Sbjct: 642 DDAGTVTEESLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH 701

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E
Sbjct: 702 FTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALE 761

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
            VM  YD TVRNS+G ++Q  YGEDGL G  +E QR+D +  S ++FE K+R D  + RP
Sbjct: 762 DVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIESQRVDIITCSDEQFEKKFRVDLMDPRP 821



 Score =  144 bits (362), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ A VGQQ+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM
Sbjct: 674  SQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 733

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +    YD   +N++
Sbjct: 734  AGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSL 775



 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 49/66 (74%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VM  YD TVRNS+G ++Q  YGEDGL G  +E QR+D +  S ++FE
Sbjct: 750 GYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIESQRVDIITCSDEQFE 809

Query: 652 DKYRFD 657
            K+R D
Sbjct: 810 KKFRVD 815



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPD 1543
            +  + + P  I++PQ N P+MGIVQDTL  + K+ +RDVFL K      + + PD
Sbjct: 417  INQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNILLWVPD 471



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V  +D LS++   NAT+LF+  +RS L  K +     L+  AF+ ++GEIE+RF +A V
Sbjct: 917  VRDDDDLSREGQHNATILFKAQLRSRLAFKRLVMECSLNKLAFQHVLGEIESRFCRAAV 975


>gi|449550549|gb|EMD41513.1| hypothetical protein CERSUDRAFT_110068 [Ceriporiopsis subvermispora
           B]
          Length = 1749

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/411 (51%), Positives = 268/411 (65%), Gaps = 55/411 (13%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           Q+ NIL+++P WDG +P P ++KPKPLWTGKQ+ S++IP  +N+ R+    PD +   P 
Sbjct: 556 QVQNILLWVPDWDGSVPTPAVIKPKPLWTGKQILSMVIPRGINIHRS----PDPKSPNPV 611

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
                 D  +++E+G ++ GI+ KK++G S G L+H+ F E G E C   +G IQTVVN 
Sbjct: 612 -----FDDGMMIENGEIIFGIVEKKTVGASQGGLIHVVFREKGPEACRTLFGGIQTVVNY 666

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WL                                        HN       G SIGIGDT
Sbjct: 667 WLF---------------------------------------HN-------GFSIGIGDT 680

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD  T   I+  I+  K++V + I  A +  L+  PG T+R++FE++V R LN ARD++
Sbjct: 681 IADRPTMDHIKEQIQTRKQNVAQTIDDATHDRLKAAPGMTIRESFESKVERELNLARDQS 740

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G  A+KSL E NN+K MVVAGSKGS INISQ+  CVGQQ VEG+RIPFGFR R+LPHF K
Sbjct: 741 GQYAQKSLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQIVEGRRIPFGFRHRSLPHFTK 800

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DD+ PESRGFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E VM
Sbjct: 801 DDFSPESRGFVENSYLRGLTPHEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVM 860

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           V YD TVRNS+G LIQ  YGEDG+ G  +E Q I+T AL+ ++FE  YR D
Sbjct: 861 VCYDGTVRNSLGDLIQFVYGEDGMDGAFIERQHIETYALNDREFEHDYRVD 911



 Score =  350 bits (898), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 209/517 (40%), Positives = 300/517 (58%), Gaps = 50/517 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G+  L ++A +NAT+LF+  +R+T  T+ V E Y L+ EAFEW++GEIE +F Q+  +
Sbjct: 1013 VRGDSALGREAQDNATMLFRIHIRATFATRRVLEKYHLNREAFEWVLGEIEAKFNQS--L 1070

Query: 1013 ACVGQQ--NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL------------ 1058
            A  G+    +  + I     + TL  F          G    +   G+            
Sbjct: 1071 AHPGEMCGTLAAQSIGEPATQMTLNTF-------HYAGVSSKNVTLGVPRLKEIINVATN 1123

Query: 1059 --TPS-EFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQ 1115
              TPS   +      ++ ++    K  +       L  VTA   I+YDPDPQ+T+I ED 
Sbjct: 1124 IKTPSLSVYLEPQIAKDAVL---AKNVQQELAFTSLRTVTAAVEIWYDPDPQSTIIEEDA 1180

Query: 1116 EFVNVYYEMPDFDPTRI----SPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCI 1171
             FV  ++ +PD +        SPWLLR+ELDR +M D+KLTM  ++ +I   F  DL  I
Sbjct: 1181 LFVESFFAIPDEEVEAKLHLQSPWLLRLELDRAKMIDRKLTMPYVAGRIAESFKTDLFVI 1240

Query: 1172 FNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGK 1231
            +++DN+EKL++R R++   D     +ED +D +E+D+FLR +E  MLS ++L+G+  I +
Sbjct: 1241 WSEDNSEKLIIRCRVLGGADK----DEDGMDTVEEDIFLRQLENTMLSSISLRGVPGIER 1296

Query: 1232 VYMHLPQTDSKKRIIITESGEFKAI--ADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1289
            V++         +IIIT+ G  +A    +W+LETDG +L  V+    VD  RT+SN   E
Sbjct: 1297 VFLL-----EHDKIIITKEGSIEARQEKEWILETDGVNLKAVMCIDGVDFKRTYSNSCVE 1351

Query: 1290 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 1349
            IF VLGIEA R ++ KE+  V++F G YVNYRHLALLCD+MT +G LMAITRHGINR DT
Sbjct: 1352 IFNVLGIEAARAAIMKELRGVIEFDGSYVNYRHLALLCDLMTHRGSLMAITRHGINRADT 1411

Query: 1350 GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 1409
            GALMRCSFEETV++LM+AAA  E D   G++EN++ GQ+  MGTG F++ LD +  KD I
Sbjct: 1412 GALMRCSFEETVEILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFEVALDIDMLKDVI 1471

Query: 1410 ---EIPLATGMMGGPA--GMFFGSAATPSSIPGPPAW 1441
                +P+ + M+   A  GM  G  A        P W
Sbjct: 1472 VDHRLPVQS-MLAAQADGGMTPGQVAMTPYDSNSPMW 1507



 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/214 (42%), Positives = 125/214 (58%), Gaps = 40/214 (18%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            +  ++ + + R ++ KE+  V++F G YVNYRHLALLCD+MT +G LMAITRHGINR DT
Sbjct: 1352 IFNVLGIEAARAAIMKELRGVIEFDGSYVNYRHLALLCDLMTHRGSLMAITRHGINRADT 1411

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            GALMRCSFEETV++LM+AAA  E D   G++EN++ GQ+  MGTG F++ LD +  KD I
Sbjct: 1412 GALMRCSFEETVEILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFEVALDIDMLKDVI 1471

Query: 893  ---EIPLATGMMGGPA--GMFFGSAATPSSMSPQMTPWAQSTPAYN---------ALMSP 938
                +P+ + M+   A  GM  G  A        MTP+  ++P +N         A  SP
Sbjct: 1472 VDHRLPVQS-MLAAQADGGMTPGQVA--------MTPYDSNSPMWNQDASFKGEAAAFSP 1522

Query: 939  ----------------GAAMTP-GGPGFSPSVAG 955
                            G  M+P G  G SP+ AG
Sbjct: 1523 LAVNGGDDPNQWRSITGYGMSPMGAGGMSPAAAG 1556



 Score =  141 bits (355), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 78/102 (76%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+  CVGQQ VEG+RIPFGFR R+LPHF KDD+ PESRGFVENSYL GLTP EFFFHAM
Sbjct: 770  SQMSVCVGQQIVEGRRIPFGFRHRSLPHFTKDDFSPESRGFVENSYLRGLTPHEFFFHAM 829

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 830  AGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSL 871



 Score =  115 bits (288), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 66/88 (75%)

Query: 515  TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
             ++ KE+  V++F G YVNYRHLALLCD+MT +G LMAITRHGINR DTGALMRCSFEET
Sbjct: 1363 AAIMKELRGVIEFDGSYVNYRHLALLCDLMTHRGSLMAITRHGINRADTGALMRCSFEET 1422

Query: 575  VDVLMDAAAHAEADPMRGYIQRRLIKAM 602
            V++LM+AAA  E D   G  +  +   M
Sbjct: 1423 VEILMEAAAVGEKDDCHGIAENVMFGQM 1450



 Score =  100 bits (248), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 86/158 (54%), Gaps = 36/158 (22%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRI----SPWLLRIELDRKRM 1584
            L  VTA   I+YDPDPQ+T+I ED  FV  ++ +PD +        SPWLLR+ELDR +M
Sbjct: 1156 LRTVTAAVEIWYDPDPQSTIIEEDALFVESFFAIPDEEVEAKLHLQSPWLLRLELDRAKM 1215

Query: 1585 TDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAE 1644
             D+KLTM  +     AG                       +I   F  DL  I+++DN+E
Sbjct: 1216 IDRKLTMPYV-----AG-----------------------RIAESFKTDLFVIWSEDNSE 1247

Query: 1645 KLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEET 1682
            KL++R R++   D     +ED +D +E+D+FLR +E T
Sbjct: 1248 KLIIRCRVLGGADK----DEDGMDTVEEDIFLRQLENT 1281



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/119 (44%), Positives = 75/119 (63%), Gaps = 6/119 (5%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD TVRNS+G LIQ  YGEDG+ G  +E Q I+T AL+ ++FE
Sbjct: 846 GYIQRRLVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGMDGAFIERQHIETYALNDREFE 905

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFS-WKQLRRIFNEDVLR 709
             YR D ++ +     F   VL+  +G  D   EL+ ++ + F+   + RR+  + V R
Sbjct: 906 HDYRVDVTDPQGG---FLPGVLQ--VGLDDSSLELQAKLDEEFAQLSEDRRLLRQFVFR 959



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 37/60 (61%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   PRQII+PQ N+PVMGIVQDTL  +RK T RD FLD       + + PD   +V
Sbjct: 512  LSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWSQVQNILLWVPDWDGSV 571


>gi|120561233|gb|ABM27002.1| RNA polymerase II largest subunit, partial [Entophlyctis
           confervae-glomeratae]
          Length = 1013

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/423 (49%), Positives = 273/423 (64%), Gaps = 49/423 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           Q+ +MN+LM++P WDG +PQP I+KP PLWTGKQ+ SLI+P  +N+T  H+ +     S 
Sbjct: 470 QDLVMNLLMWVPDWDGTIPQPAIIKPVPLWTGKQIVSLILPAKINVTGMHTAYVQTP-SN 528

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           P   I   D KV++E+G LL GIL K  +G+SSG ++H+   E G +V   F+   QTVV
Sbjct: 529 PEPDIP--DCKVLIENGELLSGILDKSMVGSSSGGVIHVAMNEYGPDVAKAFFNGCQTVV 586

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL  G                                               SIGIG
Sbjct: 587 NYWLLQHGF----------------------------------------------SIGIG 600

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD +T  +I  AI K+K    E+I+ A N  LE  PG ++R+TFE+ + + LN ARD
Sbjct: 601 DTIADKETTQQINDAIAKSKAKCSEIIKAAQNGTLEGMPGLSVRETFESYITKELNTARD 660

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G SA+ +L E+NN+K MVVAGSKGS IN++Q+ ACVGQQNVEG RIPFGF+ R+LPHF
Sbjct: 661 GAGKSAQMTLKEFNNVKQMVVAGSKGSYINVAQMSACVGQQNVEGSRIPFGFKYRSLPHF 720

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDD+ PE+RGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E 
Sbjct: 721 TKDDHTPEARGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALED 780

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           +M  YD TVRN++G+++Q  YGEDG+ G  VE Q +D +  S + F   Y+ D ++++  
Sbjct: 781 LMAQYDGTVRNALGEIVQFCYGEDGMDGAKVERQHLDNMGTSDQAFVKMYKVDMASDKHK 840

Query: 492 LRN 494
            RN
Sbjct: 841 FRN 843



 Score =  144 bits (362), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 78/102 (76%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            AQ+ ACVGQQNVEG RIPFGF+ R+LPHF KDD+ PE+RGFVENSYL GLTP EFFFHAM
Sbjct: 692  AQMSACVGQQNVEGSRIPFGFKYRSLPHFTKDDHTPEARGFVENSYLRGLTPQEFFFHAM 751

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +    YD   +N +
Sbjct: 752  GGREGLIDTAVKTAETGYIQRRLVKALEDLMAQYDGTVRNAL 793



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 36/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +M  YD TVRN++G+++Q  YGEDG+ G  VE Q +D +  S + F 
Sbjct: 768 GYIQRRLVKALEDLMAQYDGTVRNALGEIVQFCYGEDGMDGAKVERQHLDNMGTSDQAFV 827

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             Y+ D ++++     F  +VL           E +                +ED+++  
Sbjct: 828 KMYKVDMASDKHK---FRNNVL-----------EFK---------------ISEDLMKT- 857

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVV--LPCNLMEVIFILQ 760
               +  +  + E+E+L  DR  LR+   +G S     LP N+  +I+  Q
Sbjct: 858 ----EAQARFDAEFEQLEHDRRTLRQEIFAGSSTTAWPLPLNIRRMIWNAQ 904



 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 42/59 (71%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G D+LSK+  +NATLLF  L+RS L ++ V E + LSSEAF+W++ EI NRF Q  V
Sbjct: 936  VRGSDELSKEGQDNATLLFHILIRSMLSSRRVVEEFHLSSEAFDWIIKEIGNRFNQCVV 994



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 38/45 (84%)

Query: 35  LGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           +G++P++ARP+WM+++VLPVPP++VRPAV M G A NQ+ + + L
Sbjct: 149 MGLNPQWARPEWMIISVLPVPPMAVRPAVSMDGVATNQDDLTHKL 193



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 36/55 (65%)

Query: 1494 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            + P+QI++PQ N P+MGIVQDTL  +RK TKRD FL +      + + PD   T+
Sbjct: 433  MVPKQIVSPQKNAPIMGIVQDTLCGIRKFTKRDTFLRQDLVMNLLMWVPDWDGTI 487


>gi|329132889|gb|AEB78335.1| Rpb1, partial [Jakoba libera]
          Length = 1040

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/416 (50%), Positives = 265/416 (63%), Gaps = 51/416 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++  MN LM++  +DG++P P ILKPKPLWTGKQ+FS I+P  VN+      HP  E++ 
Sbjct: 460 RDHFMNCLMWVDDFDGQLPMPAILKPKPLWTGKQLFSQILP-KVNLRLRSKDHPRSENT- 517

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
               +SPGDT+V++E G LL G  CK ++GTS GSL+H+ + E G EVC R  G +Q +V
Sbjct: 518 ---LVSPGDTQVIIEQGELLAGKCCKNTMGTSQGSLVHVVYTEQGPEVCARMMGQVQRLV 574

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL                                              T G SIGIG
Sbjct: 575 NYWLL----------------------------------------------TVGFSIGIG 588

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           D + D  T   I  AI   K+ V  VI++ H   LE  PG TL ++FE  VN  LN ARD
Sbjct: 589 DCVPDEITMRTITEAITDDKKQVTGVIKELHKRKLEKKPGLTLLESFEAVVNDKLNQARD 648

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           K G +A +SL+E NN K MV AGSKG+ +NISQVIACVGQQNVEG+RIPFGFR RTLPHF
Sbjct: 649 KAGNAALESLSERNNFKNMVTAGSKGNELNISQVIACVGQQNVEGRRIPFGFRNRTLPHF 708

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            +++YGPES+GFV NSYL+GLTP EFFFH+MGGREG+IDTAVKT+ETGYIQRRL+KAME 
Sbjct: 709 RQENYGPESKGFVSNSYLSGLTPQEFFFHSMGGREGIIDTAVKTSETGYIQRRLVKAMED 768

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSN 487
           +MV YD TVR++ G+++Q  YGEDGL    VE Q  + V++S   F   + + P N
Sbjct: 769 IMVRYDGTVRDARGKVLQFVYGEDGLDSIRVESQNFELVSMSQNAFRQLFEYPPHN 824



 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 81/104 (77%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   N    +QVIACVGQQNVEG+RIPFGFR RTLPHF +++YGPES+GFV NSYL+GLT
Sbjct: 671  GSKGNELNISQVIACVGQQNVEGRRIPFGFRNRTLPHFRQENYGPESKGFVSNSYLSGLT 730

Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
            P EFFFH+MGGREG+IDTAVKT+ET  +   L +   +  + YD
Sbjct: 731  PQEFFFHSMGGREGIIDTAVKTSETGYIQRRLVKAMEDIMVRYD 774



 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 82/170 (48%), Gaps = 22/170 (12%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME +MV YD TVR++ G+++Q  YGEDGL    VE Q  + V++S   F 
Sbjct: 756 GYIQRRLVKAMEDIMVRYDGTVRDARGKVLQFVYGEDGLDSIRVESQNFELVSMSQNAFR 815

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             + + P N                     ++S  +       +   + R     V+  L
Sbjct: 816 QLFEYPPHNH-------------------PLLSSSQSSFTVLLACIMVSR---AQVIESL 853

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                 + EL  E E+L EDR AL  IF+SGE    +P N+  +I   Q+
Sbjct: 854 RNDPTKVDELVDEVEQLREDRRALARIFTSGEGRSPMPVNVDRLIVNAQK 903



 Score = 61.6 bits (148), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 31/37 (83%)

Query: 34  ILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSAR 70
           +LG +P FARPDW+LVTVLPVPP +VRP++ M GS R
Sbjct: 146 MLGFNPNFARPDWLLVTVLPVPPPAVRPSIDMGGSGR 182



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 962  QANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVIA--CVG 1016
            + + NAT LF+  +R+ L +K V + Y L  ++FEWL+ EI  RF QA +    CVG
Sbjct: 949  EGSRNATYLFEIYLRTKLASKRVIQKYHLDKQSFEWLISEIRTRFFQALITPGECVG 1005



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 39/50 (78%), Gaps = 1/50 (2%)

Query: 1482 LLTLTLMVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            LLT   ++E + + P+ +I+P++N PVMG+VQD+L A R++T RDVFL++
Sbjct: 412  LLTKAELLE-LMMIPKNMISPKSNSPVMGLVQDSLLACRRITLRDVFLER 460


>gi|397135906|gb|AFO11448.1| RNA polymerase I, partial [Yamadazyma philogaea]
          Length = 865

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/412 (49%), Positives = 261/412 (63%), Gaps = 57/412 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MN+L ++P WDG +P P ++KPKPLWTGKQ+ S+ IP  +++ R  S+         
Sbjct: 357 DQVMNMLYWIPTWDGVIPPPAVMKPKPLWTGKQLLSIAIPKGIHLQRLESS--------- 407

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              +SP D  +++  G ++ G++ KK++G++ G L+H  F E   +VC + + NIQ VVN
Sbjct: 408 --LLSPKDNGMLIVDGEIMFGVVDKKTVGSTGGGLIHTVFREKSPQVCAQLFSNIQKVVN 465

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL  G SIGIGDTIAD +T   +   I++AK  V ++I  A    LEP  G       
Sbjct: 466 FWLLHNGFSIGIGDTIADSETMKVVTTTIEEAKSKVQDIIMNAQRDKLEPEAGM------ 519

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
                                                   TLR+TFEN V+R+LN ARD 
Sbjct: 520 ----------------------------------------TLRETFENNVSRVLNQARDT 539

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ SL + NN+K MV +GSKGS INISQ+ ACVGQQ VEGKRIPFGF  RTLPHF 
Sbjct: 540 AGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRTLPHFT 599

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 600 KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 659

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           MVHYD T RNS+G ++Q  YGEDG+ G  VE Q +DT+  S   FE +Y+ D
Sbjct: 660 MVHYDGTTRNSLGDIVQFLYGEDGMDGTQVEKQSVDTIPGSDAVFEKRYKID 711



 Score =  146 bits (368), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF  RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 570  SQMSACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 629

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 630  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 671



 Score = 94.0 bits (232), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 41/166 (24%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G ++Q  YGEDG+ G  VE Q +DT+  S   FE
Sbjct: 646 GYIQRRLVKALEDIMVHYDGTTRNSLGDIVQFLYGEDGMDGTQVEKQSVDTIPGSDAVFE 705

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +Y+ D  ++                       EL  E                   +E+
Sbjct: 706 KRYKIDLLHD-----------------------ELPIESA-----------------KEI 725

Query: 712 MGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEVI 756
            G  ++   L++E+E+L +DRE LR + F +G+S+  LP N+  ++
Sbjct: 726 KGDVELQKVLDEEFEQLKKDREYLRTVCFPNGDSSWPLPVNMRRIV 771



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 46/59 (77%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+  L+K+A ENATLLFQCLVRS L  + V E Y+L+  +FEW+VGEIEN+FQ++ V
Sbjct: 807  VRGDSPLAKEAQENATLLFQCLVRSRLAARRVIEEYKLNKVSFEWVVGEIENQFQKSAV 865



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 38/62 (61%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   P QI++PQ+N+PVMGIVQDTL  +RKMT RD F++       +Y+ P     +
Sbjct: 314  LSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFIELDQVMNMLYWIPTWDGVI 373

Query: 1549 IP 1550
             P
Sbjct: 374  PP 375


>gi|303272485|ref|XP_003055604.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463578|gb|EEH60856.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1694

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/414 (51%), Positives = 267/414 (64%), Gaps = 51/414 (12%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++  MNILM+L  WDGK+P+P ILKP+PLWTGKQVF++ +P +V++T+  +   D++   
Sbjct: 537 KDVFMNILMWLENWDGKVPKPAILKPEPLWTGKQVFTMFLP-DVSLTKQSAWAKDND--- 592

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           P+ + S  DT V +E G L+ GILCKK+LG+  G L+H+ + E G      F   +Q ++
Sbjct: 593 PHDF-SVEDTGVRIEKGELITGILCKKTLGSGGGGLIHVIWEEWGPTAARGFVSQVQWLL 651

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WLL  G +                                              IGI 
Sbjct: 652 NYWLLQHGFT----------------------------------------------IGIS 665

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD  T   I   I KAK+DV EVI  A    LE  PG T++Q+FE +VN+ILN ARD
Sbjct: 666 DTIADDGTMNSINDTITKAKQDVKEVIALAQTNALELQPGMTMQQSFEQKVNQILNKARD 725

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G SA+ SL + NN+K  V AGSKGS +NISQ+IACVGQQNVEGKRIPFGF  R+LPHF
Sbjct: 726 NAGNSAQGSLDDTNNVKMTVTAGSKGSFLNISQMIACVGQQNVEGKRIPFGFDGRSLPHF 785

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME 
Sbjct: 786 TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 845

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDP 485
           ++V YD TVRNS G +IQ  YGEDG+    VE Q+IDT+    +KF+  +  DP
Sbjct: 846 IIVKYDGTVRNSAGDVIQFLYGEDGMDATYVESQKIDTLRHDKEKFKRTFHLDP 899



 Score =  389 bits (998), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/498 (44%), Positives = 308/498 (61%), Gaps = 30/498 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G D+LS +A  N+T+LF  LVRSTL  K V ++++LS  AF W+VGE+E+RF+ A   
Sbjct: 1004 VPGGDELSLEAQRNSTILFFALVRSTLSAKRVMKDFKLSPAAFNWVVGEVESRFKMALAP 1063

Query: 1013 ACVGQQNVEGKRIPFGFRKRTLP--HFIKDDYGPESRGFVENSYLAGL-----TPS--EF 1063
               G   V  + I     + TL   HF        + G      +  +     TPS    
Sbjct: 1064 PGDGIGTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKKIKTPSLTVA 1123

Query: 1064 FFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYE 1123
                + G   +      + E       L  V A + IYYDPDP +TVI ED+EFV  YYE
Sbjct: 1124 LRKDLAGDRAMAKNVQASLEYTT----LHSVAAVSEIYYDPDPTDTVIEEDKEFVRAYYE 1179

Query: 1124 MPD--FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLV 1181
            MPD   DP R+SPW+LRIEL+R+ M DKKL M  ++E+IN  F DDL+CIFNDDN+EKL+
Sbjct: 1180 MPDEEVDPARMSPWVLRIELNREMMVDKKLLMADVAERINEDFQDDLSCIFNDDNSEKLI 1239

Query: 1182 LRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1241
            +RIRIMNS+  K    E    + ED++FL+ +EA +L+ + L+GI  I KV++     ++
Sbjct: 1240 VRIRIMNSELEK----EQGASQTEDEVFLKRLEAQLLNSLALRGIPDIKKVFIR----EA 1291

Query: 1242 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1301
                +  E+  +   ++W+L+T+G +L++V++  DVD  RT SN + E+ QVLGIEAVR 
Sbjct: 1292 NTMGLDPETETYAKKSEWMLDTEGVNLLEVMNHEDVDFTRTTSNHLIEVIQVLGIEAVRN 1351

Query: 1302 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1361
            ++ KE+  V++F G YVNYRHLA+L +VMT +GHLM+ITRHGINR +TG LMRCSFEETV
Sbjct: 1352 ALLKELRGVIEFDGSYVNYRHLAILVEVMTYRGHLMSITRHGINRVETGPLMRCSFEETV 1411

Query: 1362 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGP 1421
            D+LM+AAA AE D M G+SENI++GQ   +GTG F L L+ +  K+ +++ L T      
Sbjct: 1412 DILMEAAAFAERDRMSGLSENIMLGQFCPLGTGEFGLHLNEDVLKEAVDLDLTTHSADA- 1470

Query: 1422 AGMFFGSAATPS--SIPG 1437
                 G+  TP+  + PG
Sbjct: 1471 ----LGAGTTPARGTTPG 1484



 Score =  153 bits (386), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+IACVGQQNVEGKRIPFGF  R+LPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 757  SQMIACVGQQNVEGKRIPFGFDGRSLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 816

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKT+ET  +   L +   +  + YD   +N+ 
Sbjct: 817  GGREGLIDTAVKTSETGYIQRRLVKAMEDIIVKYDGTVRNSA 858



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/172 (45%), Positives = 115/172 (66%), Gaps = 8/172 (4%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR ++ KE+  V++F G YVNYRHLA+L +VMT +GHLM+ITRHGINR +T
Sbjct: 1340 VIQVLGIEAVRNALLKELRGVIEFDGSYVNYRHLAILVEVMTYRGHLMSITRHGINRVET 1399

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G LMRCSFEETVD+LM+AAA AE D M G+SENI++GQ   +GTG F L L+ +  K+ +
Sbjct: 1400 GPLMRCSFEETVDILMEAAAFAERDRMSGLSENIMLGQFCPLGTGEFGLHLNEDVLKEAV 1459

Query: 893  EIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTP 944
            ++ L T           G+  TP+  +   TP    + + + L+SP A  +P
Sbjct: 1460 DLDLTTHSADA-----LGAGTTPARGT---TPGGVGSASPSFLLSPQAHASP 1503



 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/154 (47%), Positives = 93/154 (60%), Gaps = 34/154 (22%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTD 1586
            L  V A + IYYDPDP +TVI ED+EFV  YYEMPD   DP R+SPW+LRIEL+R+ M D
Sbjct: 1147 LHSVAAVSEIYYDPDPTDTVIEEDKEFVRAYYEMPDEEVDPARMSPWVLRIELNREMMVD 1206

Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
            KKL M  ++                            E+IN  F DDL+CIFNDDN+EKL
Sbjct: 1207 KKLLMADVA----------------------------ERINEDFQDDLSCIFNDDNSEKL 1238

Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            ++RIRIMNS+  K    E    + ED++FL+ +E
Sbjct: 1239 IVRIRIMNSELEK----EQGASQTEDEVFLKRLE 1268



 Score =  114 bits (286), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/130 (50%), Positives = 81/130 (62%), Gaps = 19/130 (14%)

Query: 519  KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
            KE+  V++F G YVNYRHLA+L +VMT +GHLM+ITRHGINR +TG LMRCSFEETVD+L
Sbjct: 1355 KELRGVIEFDGSYVNYRHLAILVEVMTYRGHLMSITRHGINRVETGPLMRCSFEETVDIL 1414

Query: 579  MDAAAHAEADPMRGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL-CGEAVEH 637
            M+AAA AE D M G          E++M          +GQ   L  GE GL   E V  
Sbjct: 1415 MEAAAFAERDRMSGL--------SENIM----------LGQFCPLGTGEFGLHLNEDVLK 1456

Query: 638  QRIDTVALSH 647
            + +D    +H
Sbjct: 1457 EAVDLDLTTH 1466



 Score =  100 bits (248), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 86/170 (50%), Gaps = 35/170 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME ++V YD TVRNS G +IQ  YGEDG+    VE Q+IDT+    +KF+
Sbjct: 833 GYIQRRLVKAMEDIIVKYDGTVRNSAGDVIQFLYGEDGMDATYVESQKIDTLRHDKEKFK 892

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             +  DP         F +  + E   + D+ + +EK  +                    
Sbjct: 893 RTFHLDPDEPN-----FGKGWMSEAQAN-DLANSVEKRAL-------------------- 926

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
                    LE EWE+L  DR  L ++ ++G+ +V LP NL  +++  Q+
Sbjct: 927 ---------LEAEWEQLKLDRAELHKVMTTGDPSVHLPVNLKRIVWNAQK 967



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            V+ + + P+ I++PQ N+PVM IVQDTL A R MTKRD F+ K
Sbjct: 495  VQELMMVPKMIVSPQANKPVMAIVQDTLLASRLMTKRDTFIKK 537



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%)

Query: 30  EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILM 80
           E+ I LG+ P+ A P W ++ VLPVPP  VRP+V    S R+++ +   LM
Sbjct: 208 EDCIALGLSPEHAHPSWYILQVLPVPPHPVRPSVAFDASTRSEDDLTVKLM 258


>gi|119514054|gb|ABL75800.1| RNA polymerase II largest subunit [Porpidia speirea]
          Length = 615

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/419 (50%), Positives = 267/419 (63%), Gaps = 56/419 (13%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           +EQ+MNIL+++P WDG +PQP ILKP+  WTGKQ+ SL++P  +N+TR       +E   
Sbjct: 85  KEQVMNILLWVPDWDGVIPQPAILKPRAKWTGKQIISLVVPPGLNLTRV-----SEEGLC 139

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           P       D  ++V  G L+ G+  KKS+G +SG ++HI F E G E    F+   QTVV
Sbjct: 140 PIN-----DDGLMVSGGELMYGLFSKKSVGAASGGVIHIIFNEKGPEAATNFFNGAQTVV 194

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N+WLL                                       HN       G SIGIG
Sbjct: 195 NHWLL---------------------------------------HN-------GFSIGIG 208

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTI D  T  +I+ A+ K KEDV E+ + A   +LEP PG  +R+TFE++V++ LN ARD
Sbjct: 209 DTIPDRNTIQQIEDAVSKQKEDVAEITRSATENELEPLPGMNVRETFESKVSKALNKARD 268

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G   ++SL + NN   M  +GSKGS INISQ+ A VGQQ+VEGK IPFGF+ RTLPHF
Sbjct: 269 DAGTVTEESLKDLNNAIQMARSGSKGSTINISQMTAVVGQQSVEGKXIPFGFKYRTLPHF 328

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E 
Sbjct: 329 TKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALED 388

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
           VM  YD TVRNS+G ++Q  YGEDGL G  +E Q++D +  SH++FE K+R D  + RP
Sbjct: 389 VMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIEPQKLDIITCSHEQFEKKFRVDLMDPRP 447



 Score =  144 bits (363), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/159 (49%), Positives = 95/159 (59%), Gaps = 4/159 (2%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ A VGQQ+VEGK IPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM
Sbjct: 300  SQMTAVVGQQSVEGKXIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 359

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
             GREGLIDTAVKTAET  +   L +   +    YD   +N++     + V   Y     D
Sbjct: 360  AGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSL----GDIVQFVYGEDGLD 415

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
               I P  L I        +KK  ++ +  +  A    D
Sbjct: 416  GVHIEPQKLDIITCSHEQFEKKFRVDLMDPRPEASISPD 454



 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 33/165 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VM  YD TVRNS+G ++Q  YGEDGL G  +E Q++D +  SH++FE
Sbjct: 376 GYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIEPQKLDIITCSHEQFE 435

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+R D  + R    I           S D + +                        E+
Sbjct: 436 KKFRVDLMDPRPEASI-----------SPDYLEQAN----------------------EI 462

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
            G+  V + L++E+E+L   R+ LR+        + LP N++ +I
Sbjct: 463 AGNLKVQTFLDEEFEQLQAARDFLRKNKQDDNEQLQLPINVLRII 507



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 41/59 (69%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+D+LSK+A  NATLLF+  +RS L  K + +   ++  AF+ ++GEIE+RF +A V
Sbjct: 543  VRGDDELSKEAQHNATLLFKAQLRSRLAFKRLVKENSINKLAFQHIIGEIESRFCRAAV 601



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  + + P  I++PQ N P+MGIVQDTL  + KM +RDVFL K      + + PD  + V
Sbjct: 43   INQLCMVPLNIVSPQRNGPLMGIVQDTLAGIYKMCRRDVFLTKEQVMNILLWVPD-WDGV 101

Query: 1549 IPE 1551
            IP+
Sbjct: 102  IPQ 104


>gi|3172134|gb|AAC18416.1| RNA polymerase II largest subunit [Bonnemaisonia hamifera]
          Length = 1732

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/415 (51%), Positives = 270/415 (65%), Gaps = 51/415 (12%)

Query: 75  MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
           MMN+LM +  WDG +P+P I KP+PLWTGKQVFSLI+P  VN+ R + THPDDE +    
Sbjct: 454 MMNLLMHVGDWDGVIPKPAIYKPRPLWTGKQVFSLILP-PVNIIRFNITHPDDEKTD--- 509

Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
            ISPGDTKV +  G L+ GI+ K+++G+S+  L+HI + E G ++       IQ +VN++
Sbjct: 510 -ISPGDTKVYISRGQLICGIVDKRTVGSSANGLIHITWKEFGPKITDTLISQIQVLVNHY 568

Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
           +L    SIGIGDTIAD  T   +   I+ AKE+V  +++KA   +L   PG         
Sbjct: 569 ILQRRQSIGIGDTIADDATMRNVIDTIQGAKEEVKLLVRKAQEKELVLLPGKG------- 621

Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
                                                  + ++FE +VN++LN ARDK+G
Sbjct: 622 ---------------------------------------MMESFETEVNKVLNGARDKSG 642

Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
            SA++SL + NN+K MV AGSKGS INISQ+ ACVGQQNVEGKRI +GF +RTLPHF+ D
Sbjct: 643 ASAQRSLLKSNNIKRMVSAGSKGSFINISQICACVGQQNVEGKRIAYGFHRRTLPHFVLD 702

Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
           D GPESRGFVENSYL GLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME +MV
Sbjct: 703 DLGPESRGFVENSYLRGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMEDIMV 762

Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
            YD TVRNS   +++  YGED +    +E Q I T  +S KK  D+Y  DPS+ +
Sbjct: 763 RYDGTVRNSCNHIVEFLYGEDSMDATFLEDQVIRTAKMSDKKLRDEYFIDPSDPK 817



 Score =  333 bits (853), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 213/565 (37%), Positives = 301/565 (53%), Gaps = 79/565 (13%)

Query: 933  NALMSPGAAMTPGGPGFSPSVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSS 992
            NA + PG      G          D L K+A ENATLLFQ  +RS L  K + + +RL+ 
Sbjct: 928  NAALEPGMEEDDEGNPIDEKPTMVDPLMKEAQENATLLFQIHMRSMLACKKLIQLHRLTF 987

Query: 993  EAFEWLVGEIENRFQQAQV-----IACVGQQN-----------------VEGKRIPFGF- 1029
            +AF WL+GE+ENRF   +V     I  +  Q+                 V  K +  G  
Sbjct: 988  KAFLWLLGEVENRFMMCRVAPGENIGAIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVP 1047

Query: 1030 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV 1089
            R + + +  K+   P    ++++ Y              G +E   +       T     
Sbjct: 1048 RLKEIINVSKNTKTPSLTVYLKSQY-------------AGDKEKAKEIQASLQHTT---- 1090

Query: 1090 FLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDK 1149
             L  VT  T IYYDPDP +TV+  D+E V+ ++++ +  P  +SPWLLRI +D+  + D+
Sbjct: 1091 -LHDVTQCTEIYYDPDPMDTVVDADREMVSSFFDLEEA-PVGVSPWLLRIIMDKDMLQDR 1148

Query: 1150 KLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDD-- 1207
            K++M+ I   I   FG+D++ I + DN EK+V+R+R+ +    +   EE   D  EDD  
Sbjct: 1149 KISMDRIENMITQNFGNDVHVIRSQDNDEKMVMRLRVADESAQEKCGEEGGADIEEDDDE 1208

Query: 1208 ----MFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLET 1263
                 FLR +E+ +LS M L GI AI KV+M      S+   +   +G  K+  +W+L+T
Sbjct: 1209 DSDDTFLRRLESELLSQMNLGGIPAIRKVFMR----QSRFTFVDPGTGTHKSREEWVLDT 1264

Query: 1264 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1323
            DG +L+ V+S   VD  RT SNDI EIF+VLGIEAVR+ +  E+  V+ F G YVNYRHL
Sbjct: 1265 DGVNLLAVMSHEAVDHTRTTSNDIVEIFEVLGIEAVREVLLNEIRGVISFDGAYVNYRHL 1324

Query: 1324 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1383
            A+L D MT +GHLMAITRHG+NR DTG LM+CSFE T D+L++AA   E D +RGV+ENI
Sbjct: 1325 AILVDTMTYRGHLMAITRHGVNRVDTGPLMKCSFEGTTDILLEAAMWGERDGLRGVTENI 1384

Query: 1384 IMGQLPRMGTGCFDLLLDAEKCKDGIE-----IPLATGMMGGPAG--------------- 1423
            ++GQL  +GTG F LLL+ +  KD IE        + G+   PAG               
Sbjct: 1385 MLGQLAPIGTGSFRLLLNEKMLKDAIEPESIDAQASMGLGQSPAGNRTYEGASVWSPARG 1444

Query: 1424 -------MFFGSAATPSSIPGPPAW 1441
                     F + ATP  +  P AW
Sbjct: 1445 DATPGRKKAFDARATPGLLYSPAAW 1469



 Score =  157 bits (396), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 83/159 (52%), Positives = 101/159 (63%), Gaps = 8/159 (5%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQNVEGKRI +GF +RTLPHF+ DD GPESRGFVENSYL GLTPSEFFFHAM
Sbjct: 671  SQICACVGQQNVEGKRIAYGFHRRTLPHFVLDDLGPESRGFVENSYLRGLTPSEFFFHAM 730

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
            GGREGLIDTAVKTAET  +   L +   +  + YD   +N+        V   Y     D
Sbjct: 731  GGREGLIDTAVKTAETGYIQRRLIKAMEDIMVRYDGTVRNSC----NHIVEFLYGEDSMD 786

Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
             T +   ++R      +M+DKKL  E   +  +  FG D
Sbjct: 787  ATFLEDQVIRT----AKMSDKKLRDEYFIDPSDPKFGQD 821



 Score =  147 bits (372), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/201 (41%), Positives = 120/201 (59%), Gaps = 8/201 (3%)

Query: 773  LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
            + +++ + +VR+ +  E+  V+ F G YVNYRHLA+L D MT +GHLMAITRHG+NR DT
Sbjct: 1291 IFEVLGIEAVREVLLNEIRGVISFDGAYVNYRHLAILVDTMTYRGHLMAITRHGVNRVDT 1350

Query: 833  GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
            G LM+CSFE T D+L++AA   E D +RGV+ENI++GQL  +GTG F LLL+ +  KD I
Sbjct: 1351 GPLMKCSFEGTTDILLEAAMWGERDGLRGVTENIMLGQLAPIGTGSFRLLLNEKMLKDAI 1410

Query: 893  E-----IPLATGMMGGPAG-MFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGG 946
            E        + G+   PAG   +  A+  S      TP  +   A++A  +PG   +P  
Sbjct: 1411 EPESIDAQASMGLGQSPAGNRTYEGASVWSPARGDATPGRKK--AFDARATPGLLYSPAA 1468

Query: 947  PGFSPSVAGEDQLSKQANENA 967
             G       E  L +Q + +A
Sbjct: 1469 WGTPLRPRTEQGLDQQMSPSA 1489



 Score =  103 bits (257), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 61/86 (70%)

Query: 520  EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 579
            E+  V+ F G YVNYRHLA+L D MT +GHLMAITRHG+NR DTG LM+CSFE T D+L+
Sbjct: 1307 EIRGVISFDGAYVNYRHLAILVDTMTYRGHLMAITRHGVNRVDTGPLMKCSFEGTTDILL 1366

Query: 580  DAAAHAEADPMRGYIQRRLIKAMESV 605
            +AA   E D +RG  +  ++  +  +
Sbjct: 1367 EAAMWGERDGLRGVTENIMLGQLAPI 1392



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 31/167 (18%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRLIKAME +MV YD TVRNS   +++  YGED +    +E Q I T  +S KK  
Sbjct: 747 GYIQRRLIKAMEDIMVRYDGTVRNSCNHIVEFLYGEDSMDATFLEDQVIRTAKMSDKKLR 806

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           D+Y  DPS+ +     F +D                         ++ R   + +++  +
Sbjct: 807 DEYFIDPSDPK-----FGQD-------------------------EKGRPYLDPNIVERV 836

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVIF 757
                +  EL  E++++  DR+ LR+ I  +GES   L  N+  VI+
Sbjct: 837 RQDAALHVELRLEFQQIEADRKLLRDYIIKTGESKRPLAVNVDRVIW 883



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 29/136 (21%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L  VT  T IYYDPDP +TV+  D+E V+ ++++ +  P  +SPWLLRI +D+  + D+K
Sbjct: 1091 LHDVTQCTEIYYDPDPMDTVVDADREMVSSFFDLEEA-PVGVSPWLLRIIMDKDMLQDRK 1149

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            ++M+ I   I                               FG+D++ I + DN EK+V+
Sbjct: 1150 ISMDRIENMI----------------------------TQNFGNDVHVIRSQDNDEKMVM 1181

Query: 1649 RIRIMNSDDSKMQDEE 1664
            R+R+ +    +   EE
Sbjct: 1182 RLRVADESAQEKCGEE 1197



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 34/45 (75%), Gaps = 1/45 (2%)

Query: 35  LGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
           +G+  +++RP+W+++T+LPVPP  VRP+ VM G  RN++ + N L
Sbjct: 130 MGLSWRWSRPEWLILTLLPVPPPQVRPS-VMRGGLRNEDDLTNKL 173



 Score = 49.7 bits (117), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 30/43 (69%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            V+ + + P  I++PQ N+PVMGIVQDTL      T+RD FL++
Sbjct: 409  VQELMLVPHCIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFLER 451


>gi|409051067|gb|EKM60543.1| hypothetical protein PHACADRAFT_246551 [Phanerochaete carnosa
           HHB-10118-sp]
          Length = 1753

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/411 (52%), Positives = 267/411 (64%), Gaps = 55/411 (13%)

Query: 74  QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
           Q+ NIL+++P WDG +P P ++KPKPLWTGKQ+ S+ IP  +N+ R    +PD + S P 
Sbjct: 556 QVQNILLWVPDWDGTVPTPVVIKPKPLWTGKQLLSMCIPRGINIHR----NPDPKSSNPV 611

Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
                 D  V++E+G L+ GI+ KK++G S G L+H+ F E G E+  + +  +Q VVN 
Sbjct: 612 -----FDDGVLIENGELIFGIVDKKTVGASQGGLVHVVFREKGPEMTRQLFTGLQQVVNY 666

Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
           WL                                        HN       G SIGIGDT
Sbjct: 667 WLF---------------------------------------HN-------GFSIGIGDT 680

Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
           IAD +T   I   I   K+ V ++I  A +  L+P PG T+R++FE++V R LN ARD+ 
Sbjct: 681 IADRKTMAHITEQIAIRKQTVAQIIDDAAHDRLKPQPGMTIRESFESKVERELNLARDQN 740

Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
           G  A+K L E NN+K MVVAGSKGS INISQ+  CVGQQ VEG+RIPFGFR RTLPHF K
Sbjct: 741 GQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQIVEGRRIPFGFRHRTLPHFTK 800

Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
           DD+ PE+RGFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E VM
Sbjct: 801 DDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVM 860

Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           VHYD TVRNS+G LIQ  YGEDG+ G  +E Q I+T ALS+++FE  YR D
Sbjct: 861 VHYDGTVRNSLGDLIQFVYGEDGMDGAFIERQNIETFALSNREFEHDYRVD 911



 Score =  349 bits (895), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 210/520 (40%), Positives = 301/520 (57%), Gaps = 50/520 (9%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
            V G+D LSK+A  NATLLF+  +R+T  T+ V E Y L+ EA EW++GEIE++F Q+  +
Sbjct: 1013 VRGDDPLSKEAQANATLLFRMHLRATFATRRVLERYHLNKEALEWVLGEIESKFNQS--L 1070

Query: 1013 ACVGQQ--NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL------------ 1058
            A  G+    +  + I     + TL  F          G    +   G+            
Sbjct: 1071 AHPGEMCGTLAAQSIGEPATQMTLNTF-------HYAGVSSKNVTLGVPRLKEIINVATN 1123

Query: 1059 --TPS-EFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQ 1115
              TPS   +  +   ++  +    K  +       L  VTA   I+YDPDP +T+I ED 
Sbjct: 1124 IKTPSLSVYLESKLAKDAAL---AKNVQQELAYTSLRTVTAAVEIWYDPDPTSTIIEEDS 1180

Query: 1116 EFVNVYYEMPDFD-PTRI---SPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCI 1171
             FV  ++ +PD +  +++   SPWLLR+ELDR +M D+KLTM  ++ +I   F  DL  I
Sbjct: 1181 VFVESFFAIPDEEVESKLHLQSPWLLRLELDRAKMIDRKLTMAYVAGRIAESFKTDLFVI 1240

Query: 1172 FNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGK 1231
            +++DN+EKL++R R++   D     E+D +  +E+D+FLR +E  ML+ ++L+G+ +I +
Sbjct: 1241 WSEDNSEKLIVRCRVLGGADK----EDDGMGTVEEDIFLRQLENTMLNSVSLRGVPSIER 1296

Query: 1232 VYMHLPQTDSKKRIIITESGEFKAIA---DWLLETDGTSLMKVLSERDVDPVRTFSNDIC 1288
            V++         +IIIT  G   A     +W+LETDG +L  V++   VD  RT+SN   
Sbjct: 1297 VFLL-----EHDKIIITPDGGIDARGGEKEWVLETDGVNLKAVMTVDGVDFRRTYSNSCV 1351

Query: 1289 EIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQD 1348
            E+F VLGIEA R ++ KE+  V++F G YVNYRHLALLCD+MT +G LMAITRHGINR D
Sbjct: 1352 EVFGVLGIEAARAAIMKELRGVIEFDGSYVNYRHLALLCDLMTHRGSLMAITRHGINRAD 1411

Query: 1349 TGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDG 1408
            TGALMRCSFEETV++LM+AAA  E D   G++EN++ GQ+  MGTG FD+ LD +  KD 
Sbjct: 1412 TGALMRCSFEETVEILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFDVALDIDMLKDV 1471

Query: 1409 I---EIPLATGMMGGP--AGMFFGSAATPSSIPGPPAWYP 1443
            I    IP  T ++      GM  G  A        P W P
Sbjct: 1472 IVDHRIPAHTSLVAPQMDGGMTPGQVAMTPYDSSSPVWNP 1511



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 92/214 (42%), Positives = 121/214 (56%), Gaps = 45/214 (21%)

Query: 776  IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
            ++ + + R ++ KE+  V++F G YVNYRHLALLCD+MT +G LMAITRHGINR DTGAL
Sbjct: 1356 VLGIEAARAAIMKELRGVIEFDGSYVNYRHLALLCDLMTHRGSLMAITRHGINRADTGAL 1415

Query: 836  MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI--- 892
            MRCSFEETV++LM+AAA  E D   G++EN++ GQ+  MGTG FD+ LD +  KD I   
Sbjct: 1416 MRCSFEETVEILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFDVALDIDMLKDVIVDH 1475

Query: 893  EIPLATGMMGGP--AGMFFGSAATPSSMSPQMTPWAQSTPAYN---------ALMSP--- 938
             IP  T ++      GM  G  A        MTP+  S+P +N         A  SP   
Sbjct: 1476 RIPAHTSLVAPQMDGGMTPGQVA--------MTPYDSSSPVWNPDGSFKGETAAFSPLAM 1527

Query: 939  --------------------GAAMTPGGPGFSPS 952
                                  +M+P  PG+SPS
Sbjct: 1528 NGGEDAASFSYMPFGQSPMGAGSMSPAAPGYSPS 1561



 Score =  143 bits (360), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+  CVGQQ VEG+RIPFGFR RTLPHF KDD+ PE+RGFVENSYL GLTP EFFFHAM
Sbjct: 770  SQMSVCVGQQIVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAM 829

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 830  AGREGLIDTAVKTAETGYIQRRLVKALEDVMVHYDGTVRNSL 871



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 66/88 (75%)

Query: 515  TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
             ++ KE+  V++F G YVNYRHLALLCD+MT +G LMAITRHGINR DTGALMRCSFEET
Sbjct: 1364 AAIMKELRGVIEFDGSYVNYRHLALLCDLMTHRGSLMAITRHGINRADTGALMRCSFEET 1423

Query: 575  VDVLMDAAAHAEADPMRGYIQRRLIKAM 602
            V++LM+AAA  E D   G  +  +   M
Sbjct: 1424 VEILMEAAAVGEKDDCHGIAENVMFGQM 1451



 Score = 98.6 bits (244), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 109/222 (49%), Gaps = 53/222 (23%)

Query: 592  GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
            GYIQRRL+KA+E VMVHYD TVRNS+G LIQ  YGEDG+ G  +E Q I+T ALS+++FE
Sbjct: 846  GYIQRRLVKALEDVMVHYDGTVRNSLGDLIQFVYGEDGMDGAFIERQNIETFALSNREFE 905

Query: 652  DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
              YR D ++       F   VL+  +G  D   EL+                        
Sbjct: 906  HDYRVDVTDPSGG---FLPGVLQ--LGLDDSSLELQ------------------------ 936

Query: 712  MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVV--LPCNLMEV------IFILQRW 762
                   ++L++E+ +L EDR+ LRE IF   +      LP NL  +      IF + R 
Sbjct: 937  -------AKLDEEFSQLSEDRQLLREFIFPRSDPATARYLPVNLHRIVQNAVQIFHIDRR 989

Query: 763  K------LWGNENLRFLCKIIFVLSVRKSVEKE--MNTVLQF 796
            K       +  + +R LC+ + V+     + KE   N  L F
Sbjct: 990  KPSDLEPAYIIDAIRALCERLVVVRGDDPLSKEAQANATLLF 1031



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 87/158 (55%), Gaps = 36/158 (22%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD-PTRI---SPWLLRIELDRKRM 1584
            L  VTA   I+YDPDP +T+I ED  FV  ++ +PD +  +++   SPWLLR+ELDR +M
Sbjct: 1156 LRTVTAAVEIWYDPDPTSTIIEEDSVFVESFFAIPDEEVESKLHLQSPWLLRLELDRAKM 1215

Query: 1585 TDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAE 1644
             D+KLTM  +     AG                       +I   F  DL  I+++DN+E
Sbjct: 1216 IDRKLTMAYV-----AG-----------------------RIAESFKTDLFVIWSEDNSE 1247

Query: 1645 KLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEET 1682
            KL++R R++   D     E+D +  +E+D+FLR +E T
Sbjct: 1248 KLIVRCRVLGGADK----EDDGMGTVEEDIFLRQLENT 1281



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 37/60 (61%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   PRQII+PQ N+PVMGIVQDTL  +RK T RD FLD       + + PD   TV
Sbjct: 512  LSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWTQVQNILLWVPDWDGTV 571


>gi|397135896|gb|AFO11443.1| RNA polymerase I, partial [Schwanniomyces etchellsii]
          Length = 872

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/422 (49%), Positives = 271/422 (64%), Gaps = 55/422 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MN+L ++P W+G +P P +++PKPLWTGKQ+ S+ IP  +++ R         D G 
Sbjct: 357 DQVMNMLYWIPNWNGIIPPPAVVRPKPLWTGKQILSMAIPKGIHLQRF--------DDGT 408

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              +SP D  +++  G ++ G++ KK++G + G L+H    E G +VC + + +IQ VVN
Sbjct: 409 -NLLSPKDNGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSSIQKVVN 467

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL  G SIGIGDTIADP+T  +I + I++AK+ V ++I  A    L+P PG       
Sbjct: 468 FWLLHNGFSIGIGDTIADPETMKDITITIQEAKDKVQQIILDAQLNKLDPEPGM------ 521

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
                                                   TLR++FE+ V+R+LN ARD 
Sbjct: 522 ----------------------------------------TLRESFEHNVSRVLNQARDT 541

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ SL + NN+K MVV+GSKGS INISQ+ ACVGQQ VEGKRIPFGF  R+LPHF 
Sbjct: 542 AGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFSDRSLPHFT 601

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 602 KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 661

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MVHYD T RNS+G +IQ  YGEDG+ G  VE Q +DT+  S   FE +YR D  N   ++
Sbjct: 662 MVHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQAVDTIPGSDASFEKRYRIDLLNPELSI 721

Query: 493 RN 494
           R+
Sbjct: 722 RD 723



 Score =  144 bits (364), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF  R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 572  SQMSACVGQQIVEGKRIPFGFSDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 632  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 673



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 88/167 (52%), Gaps = 38/167 (22%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G +IQ  YGEDG+ G  VE Q +DT+  S   FE
Sbjct: 648 GYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQAVDTIPGSDASFE 707

Query: 652 DKYRFDPSN-ERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRE 710
            +YR D  N E  +R          L+ SG                            +E
Sbjct: 708 KRYRIDLLNPELSIR--------DSLLESG----------------------------KE 731

Query: 711 LMGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEVI 756
           + G  ++   L++E+++L  DR+ LRE+ F SG+ +  LP NL  +I
Sbjct: 732 IRGDVELQKVLDEEYDQLKADRKYLREVCFPSGDFSWPLPVNLRRII 778



 Score = 67.4 bits (163), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 42/57 (73%)

Query: 955  GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            G+  L K+A ENATLLFQCL+RS L  + V E Y+L+  +FEW++GE E +FQ++ V
Sbjct: 816  GDTPLIKEAQENATLLFQCLLRSRLAARRVIEEYKLNRASFEWVLGEAETQFQRSIV 872



 Score = 60.8 bits (146), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   P QI++PQ+N+PVMGIVQDTL  VRKMT RD F++       +Y+ P+  N +
Sbjct: 314  LSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIEYDQVMNMLYWIPN-WNGI 372

Query: 1549 IP 1550
            IP
Sbjct: 373  IP 374


>gi|294654840|ref|XP_002770038.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
 gi|199429189|emb|CAR65414.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
          Length = 1749

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/469 (46%), Positives = 287/469 (61%), Gaps = 65/469 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MN+L ++P WDG +P P I+ PKPLWTGKQ+ S+ IP  +++ R         D G 
Sbjct: 549 DQVMNMLYWIPNWDGVIPPPAIVSPKPLWTGKQLLSMAIPKGIHLQRF--------DDGK 600

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              +SP D  ++V  G ++ G++ KK++G + G L+H    E G +VC + + +IQ VVN
Sbjct: 601 -NLLSPKDNGMLVVDGEIMFGVVDKKTVGATGGGLIHTVMREKGSQVCAQLFSSIQKVVN 659

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 660 FWLL---------------------------------------HN-------GFSIGIGD 673

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T  ++   I+ AK+ V E+I  A +  LEP PG TLR++FE+ V+R+LN ARD 
Sbjct: 674 TIADSSTMRDVTTTIQDAKDKVQEIILDAQSNKLEPEPGMTLRESFEHNVSRVLNQARDT 733

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQQ VEGKRIPFGF  R+LPHF 
Sbjct: 734 AGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRSLPHFT 793

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 794 KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 853

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MVHYD + RNS+G +IQ  YGEDG+ G  VE Q +DT+  S + FE +YR D  +   ++
Sbjct: 854 MVHYDGSTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSDESFEKRYRIDVLDPSKSI 913

Query: 493 RNVSSLRRVVNSKPLLIGCWKLTSVEKEMNTVLQFYGLYVNYRHLALLC 541
           R       ++ S   + G  KL  V  E     ++  L  + R+L  +C
Sbjct: 914 R-----ESLLESGKEIKGDVKLQKVLDE-----EYRQLEADRRYLRDVC 952



 Score =  360 bits (925), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 205/508 (40%), Positives = 307/508 (60%), Gaps = 56/508 (11%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            + G+  L+K+A ENATLLFQCL+RS L T+ V E ++LS  +FEW++GEIE +FQ++   
Sbjct: 1006 IRGKTALTKEAQENATLLFQCLLRSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIVH 1065

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  +  Q+                 V  K +  G  R + + +  K+   P    +
Sbjct: 1066 PGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 1125

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            +E    A +  ++           ++ +A++     N       VT+ T I+YDPDP++T
Sbjct: 1126 LEKESAADIEKAK-----------IVQSAIEHTTLKN-------VTSATEIFYDPDPRST 1167

Query: 1110 VIPEDQEFVNVYYEMPD----FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFG 1165
            VI ED + V  Y+ +PD        + SPWLLR+ELDR +M DK+LTM  ++EKI+  FG
Sbjct: 1168 VIEEDYDTVEAYFAIPDEKVEESIEKQSPWLLRLELDRAKMLDKQLTMSQVAEKISQNFG 1227

Query: 1166 DDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQG 1225
            +DL  I++DD A+KL++R R++  D   + ++ DA    E+D  L+ IE++ML  ++L+G
Sbjct: 1228 EDLFVIWSDDTADKLIIRCRVVR-DPKSLDEDADA----EEDQILKRIESHMLESISLRG 1282

Query: 1226 IEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSN 1285
            I  I +V+M   + +S     IT  GEFK   +W+LETDG +L  V++   VD  RT+SN
Sbjct: 1283 IPGITRVFMMQHKVNSPD---IT--GEFKQSQEWVLETDGVNLADVMAVSGVDSSRTYSN 1337

Query: 1286 DICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1345
            +  E+  VLGIEA R ++ KE+  V+ F G YVNYRH+ALL DVMT++GHLMAITRHGIN
Sbjct: 1338 NFIEVLSVLGIEATRTALFKEILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGIN 1397

Query: 1346 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 1405
            R DTGALMRCSFEETV++L++A + AE D  RG+SEN+++GQ+  +GTG FD+++D +  
Sbjct: 1398 RADTGALMRCSFEETVEILLEAGSAAELDDCRGISENVMLGQMAPLGTGAFDVMVDDKML 1457

Query: 1406 KDGIEIPLATGMMGGPAGMFF-GSAATP 1432
            +        T   G   G +     ATP
Sbjct: 1458 QTAPSNIAVTTAAGNETGEYADDGGATP 1485



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 154/282 (54%), Gaps = 29/282 (10%)

Query: 682  VISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKLCE-DREALREIFS 740
            ++  +E  M++  S + +  I    +++  + S D+  E ++  E + E D   L ++ +
Sbjct: 1266 ILKRIESHMLESISLRGIPGITRVFMMQHKVNSPDITGEFKQSQEWVLETDGVNLADVMA 1325

Query: 741  -SG-ESNVVLPCNLMEVIFILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYG 798
             SG +S+     N +EV+ +L                   + + R ++ KE+  V+ F G
Sbjct: 1326 VSGVDSSRTYSNNFIEVLSVLG------------------IEATRTALFKEILNVIAFDG 1367

Query: 799  LYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADP 858
             YVNYRH+ALL DVMT++GHLMAITRHGINR DTGALMRCSFEETV++L++A + AE D 
Sbjct: 1368 SYVNYRHMALLVDVMTSRGHLMAITRHGINRADTGALMRCSFEETVEILLEAGSAAELDD 1427

Query: 859  MRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGMFF-GSAATP-- 915
             RG+SEN+++GQ+  +GTG FD+++D +  +        T   G   G +     ATP  
Sbjct: 1428 CRGISENVMLGQMAPLGTGAFDVMVDDKMLQTAPSNIAVTTAAGNETGEYADDGGATPYR 1487

Query: 916  ----SSMSPQMTPWAQSTPAYNALMSPGA-AMTPGGPGFSPS 952
                     Q    A  +P + A +S G+ A+T  G   SPS
Sbjct: 1488 DYEMQDDKIQFEEGAGFSPIHTAPVSDGSGALTSYGGATSPS 1529



 Score =  145 bits (365), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF  R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 764  SQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 823

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 824  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGSTRNSL 865



 Score =  115 bits (289), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 69/88 (78%)

Query: 515  TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
            T++ KE+  V+ F G YVNYRH+ALL DVMT++GHLMAITRHGINR DTGALMRCSFEET
Sbjct: 1353 TALFKEILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRADTGALMRCSFEET 1412

Query: 575  VDVLMDAAAHAEADPMRGYIQRRLIKAM 602
            V++L++A + AE D  RG  +  ++  M
Sbjct: 1413 VEILLEAGSAAELDDCRGISENVMLGQM 1440



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 42/169 (24%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD + RNS+G +IQ  YGEDG+ G  VE Q +DT+  S + FE
Sbjct: 840 GYIQRRLVKALEDIMVHYDGSTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSDESFE 899

Query: 652 DKYR---FDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVL 708
            +YR    DPS          + +   L+ SG                            
Sbjct: 900 KRYRIDVLDPS----------KSIRESLLESG---------------------------- 921

Query: 709 RELMGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEVI 756
           +E+ G   +   L++E+ +L  DR  LR++ F +G+ N  LP NL  +I
Sbjct: 922 KEIKGDVKLQKVLDEEYRQLEADRRYLRDVCFPNGDFNWPLPVNLRRII 970



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 37/156 (23%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPT----RISPWLLRIELDRKRM 1584
            L  VT+ T I+YDPDP++TVI ED + V  Y+ +PD        + SPWLLR+ELDR +M
Sbjct: 1149 LKNVTSATEIFYDPDPRSTVIEEDYDTVEAYFAIPDEKVEESIEKQSPWLLRLELDRAKM 1208

Query: 1585 TDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAE 1644
             DK+LTM  ++EKI                            +  FG+DL  I++DD A+
Sbjct: 1209 LDKQLTMSQVAEKI----------------------------SQNFGEDLFVIWSDDTAD 1240

Query: 1645 KLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            KL++R R++  D   + ++ DA    E+D  L+ IE
Sbjct: 1241 KLIIRCRVVR-DPKSLDEDADA----EEDQILKRIE 1271



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 65/134 (48%), Gaps = 34/134 (25%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   P QI++PQ+N+PVMGIVQDTL  VRKMT RD F++         YD       
Sbjct: 506  LSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE---------YD------- 549

Query: 1549 IPEDQEFVNVYYEMPDFD-----PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFG 1603
                 + +N+ Y +P++D     P  +SP  L         T K+L   AI + I+    
Sbjct: 550  -----QVMNMLYWIPNWDGVIPPPAIVSPKPL--------WTGKQLLSMAIPKGIHLQRF 596

Query: 1604 DDLNTPLSPTDKKL 1617
            DD    LSP D  +
Sbjct: 597  DDGKNLLSPKDNGM 610


>gi|397135892|gb|AFO11441.1| RNA polymerase I, partial [Debaryomyces hansenii]
          Length = 872

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/469 (46%), Positives = 287/469 (61%), Gaps = 65/469 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MN+L ++P WDG +P P I+ PKPLWTGKQ+ S+ IP  +++ R         D G 
Sbjct: 357 DQVMNMLYWIPNWDGVIPPPAIVSPKPLWTGKQLLSMAIPKGIHLQRF--------DDGK 408

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              +SP D  ++V  G ++ G++ KK++G + G L+H    E G +VC + + +IQ VVN
Sbjct: 409 -NLLSPKDNGMLVVDGEIMFGVVDKKTVGATGGGLIHTVMREKGSQVCAQLFSSIQKVVN 467

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 468 FWLL---------------------------------------HN-------GFSIGIGD 481

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T  ++   I+ AK+ V E+I  A +  LEP PG TLR++FE+ V+R+LN ARD 
Sbjct: 482 TIADSSTMRDVTTTIQDAKDKVQEIILDAQSNKLEPEPGMTLRESFEHNVSRVLNQARDT 541

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQQ VEGKRIPFGF  R+LPHF 
Sbjct: 542 AGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRSLPHFT 601

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 602 KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 661

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MVHYD + RNS+G +IQ  YGEDG+ G  VE Q +DT+  S + FE +YR D  +   ++
Sbjct: 662 MVHYDGSTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSDESFEKRYRIDVLDPSKSI 721

Query: 493 RNVSSLRRVVNSKPLLIGCWKLTSVEKEMNTVLQFYGLYVNYRHLALLC 541
           R       ++ S   + G  KL  V  E     ++  L  + R+L  +C
Sbjct: 722 RE-----SLLESGKEIKGDVKLQKVLDE-----EYRQLEADRRYLRDVC 760



 Score =  145 bits (365), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF  R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 572  SQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 632  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGSTRNSL 673



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 42/169 (24%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD + RNS+G +IQ  YGEDG+ G  VE Q +DT+  S + FE
Sbjct: 648 GYIQRRLVKALEDIMVHYDGSTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSDESFE 707

Query: 652 DKYR---FDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVL 708
            +YR    DPS          + +   L+ SG                            
Sbjct: 708 KRYRIDVLDPS----------KSIRESLLESG---------------------------- 729

Query: 709 RELMGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEVI 756
           +E+ G   +   L++E+ +L  DR  LR++ F +G+ N  LP NL  +I
Sbjct: 730 KEIKGDVKLQKVLDEEYRQLEADRRYLRDVCFPNGDFNWPLPVNLRRII 778



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 46/59 (77%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            + G+  L+K+A ENATLLFQCL+RS L T+ V E ++LS  +FEW++GEIE +FQ++ V
Sbjct: 814  IRGKTALTKEAQENATLLFQCLLRSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIV 872



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 65/134 (48%), Gaps = 34/134 (25%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   P QI++PQ+N+PVMGIVQDTL  VRKMT RD F++         YD       
Sbjct: 314  LSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE---------YD------- 357

Query: 1549 IPEDQEFVNVYYEMPDFD-----PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFG 1603
                 + +N+ Y +P++D     P  +SP  L         T K+L   AI + I+    
Sbjct: 358  -----QVMNMLYWIPNWDGVIPPPAIVSPKPL--------WTGKQLLSMAIPKGIHLQRF 404

Query: 1604 DDLNTPLSPTDKKL 1617
            DD    LSP D  +
Sbjct: 405  DDGKNLLSPKDNGM 418


>gi|397135878|gb|AFO11434.1| RNA polymerase I, partial [Wickerhamia fluorescens]
          Length = 872

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/412 (50%), Positives = 264/412 (64%), Gaps = 55/412 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MN+L ++P WDG +P P ++KPKP+WTGKQ+ S+ IP  +++ R           G 
Sbjct: 357 DQVMNMLYWIPDWDGVIPPPAVIKPKPMWTGKQLLSMAIPKGIHLQRF---------DGG 407

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              +SP DT +++  G ++ G++ KK++G + G L+H    E G  VC + +  IQ VVN
Sbjct: 408 KDMLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPYVCAQLFSRIQKVVN 467

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 468 YWLL---------------------------------------HN-------GFSIGIGD 481

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T  ++   I++AK+ V E+I +A    LEP PG TLR++FE+ V+R+LN ARD 
Sbjct: 482 TIADASTMRDVTTTIQEAKDKVQEIILEAQQNTLEPEPGMTLRESFEHNVSRVLNQARDT 541

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQQ VEGKRIPFGF  R+LPHF 
Sbjct: 542 AGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFSDRSLPHFT 601

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 602 KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 661

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           MVHYD T RNS+G +IQ  YGEDG+ G  VE Q +DT+  S   FE +YR D
Sbjct: 662 MVHYDGTTRNSLGDVIQFVYGEDGIDGTQVEKQSVDTIPGSDVSFERRYRID 713



 Score =  145 bits (365), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF  R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 572  SQMSACVGQQIVEGKRIPFGFSDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 632  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 673



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 42/169 (24%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G +IQ  YGEDG+ G  VE Q +DT+  S   FE
Sbjct: 648 GYIQRRLVKALEDIMVHYDGTTRNSLGDVIQFVYGEDGIDGTQVEKQSVDTIPGSDVSFE 707

Query: 652 DKYR---FDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVL 708
            +YR    DPS          + +   L+ SG                            
Sbjct: 708 RRYRIDVLDPS----------KSISEALLESG---------------------------- 729

Query: 709 RELMGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEVI 756
           +E+ G   +   L++E+ +L +DR  LR++ F +G+ +  LP NL  +I
Sbjct: 730 KEIKGDVKLQKVLDEEYNQLLDDRRYLRDVCFPNGDFSWPLPVNLRRII 778



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 46/59 (77%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+ +L K+A ENATLLFQCL+RS L  + + E ++L+  +FEW+VGEIE++FQ++ V
Sbjct: 814  VRGDGELLKEAQENATLLFQCLLRSRLSARRIIEEFKLNRSSFEWVVGEIESQFQKSIV 872



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 40/62 (64%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   P QI++PQ+N+PVMGIVQDTL  VRKMT RD+F++       +Y+ PD    +
Sbjct: 314  LSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIEYDQVMNMLYWIPDWDGVI 373

Query: 1549 IP 1550
             P
Sbjct: 374  PP 375


>gi|397135872|gb|AFO11431.1| RNA polymerase I, partial [Metschnikowia bicuspidata]
          Length = 872

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/412 (50%), Positives = 263/412 (63%), Gaps = 55/412 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           EQ+MN+L ++P WDG +P P + KPKPLW+GKQ+ S+ IP  +++ R         D G 
Sbjct: 357 EQVMNMLYWIPNWDGVIPPPAVFKPKPLWSGKQLLSMAIPKGIHLQRF--------DDG- 407

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              +SP D  ++V  G ++ G++ KK++G + G L+H    E G +VC + + +IQ VVN
Sbjct: 408 RDMLSPKDLGMLVVDGEIIFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSSIQKVVN 467

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 468 YWLL---------------------------------------HN-------GFSIGIGD 481

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T  ++   I++AK+ V E+I  A    LEP PG TLR++FE+ V+RILN ARD 
Sbjct: 482 TIADKDTMRDVTTTIQEAKQKVQEIIMDAQQNKLEPEPGMTLRESFEHNVSRILNQARDT 541

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ +L + NN+K MV +GSKGS INISQ+ ACVGQQ VEGKRIPFGF  RTLPHF 
Sbjct: 542 AGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIPFGFGDRTLPHFT 601

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 602 KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 661

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           MVHYD T RNS+G +IQ  YGEDG+   +VE Q +DT+  S   FE +YR D
Sbjct: 662 MVHYDGTTRNSLGDIIQFVYGEDGIDATSVEKQSVDTIPGSDASFEKRYRID 713



 Score =  145 bits (366), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF  RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 572  SQMSACVGQQIVEGKRIPFGFGDRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 632  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 673



 Score =  100 bits (248), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 109/225 (48%), Gaps = 54/225 (24%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G +IQ  YGEDG+   +VE Q +DT+  S   FE
Sbjct: 648 GYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDATSVEKQSVDTIPGSDASFE 707

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YR D                  ++     ISE   E     S KQ++           
Sbjct: 708 KRYRID------------------VLDPSKSISESLLE-----SGKQIK----------- 733

Query: 712 MGSGDVISE--LEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVIFILQRWKLWGN- 767
              GDV  +  L++E+++L +DR+ LRE +F +G+ N  LP NL  +I   Q+    G  
Sbjct: 734 ---GDVAVQKVLDEEYDQLLKDRKFLREVVFPNGDYNWPLPVNLRRIIQNAQQIFHSGRQ 790

Query: 768 -----------ENLRFLCKIIFVLSVRKSVEKEM--NTVLQFYGL 799
                      E ++ LC  + VL  +  + KE   N  L F  L
Sbjct: 791 KASDLRLEEIVEGIQSLCTKLLVLRGKTELIKEAQENATLLFQCL 835



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 44/57 (77%)

Query: 955  GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            G+ +L K+A ENATLLFQCL+RS L  + V E ++L+  +FEW+ GEIE++FQ++ V
Sbjct: 816  GKTELIKEAQENATLLFQCLLRSRLAARRVIEEFKLNKVSFEWVCGEIESQFQKSIV 872



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 24/126 (19%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   P QI++PQ+N+PVMGIVQDTL  +RKMT RD F+                   
Sbjct: 314  MSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDSFI------------------- 354

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNT 1608
              E ++ +N+ Y +P++D     P + +    +   + K+L   AI + I+    DD   
Sbjct: 355  --EYEQVMNMLYWIPNWDGVIPPPAVFK---PKPLWSGKQLLSMAIPKGIHLQRFDDGRD 409

Query: 1609 PLSPTD 1614
             LSP D
Sbjct: 410  MLSPKD 415


>gi|397135971|gb|AFO11480.1| RNA polymerase I, partial [Botryozyma nematodophila]
          Length = 872

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/420 (51%), Positives = 271/420 (64%), Gaps = 55/420 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           E+MM+ILM++P W+G + QP I++PKPLWTGKQV S+ IP  +N+ R       +E +G 
Sbjct: 357 EEMMDILMWVPDWNGIVVQPAIIRPKPLWTGKQVISMCIPKGINIQRY------EEGTGK 410

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              +SP D  ++V++G ++ G++ KK++G   G L+H    E G+ VC  F+  IQ VVN
Sbjct: 411 ---LSPTDNGMLVDNGEIIYGVVDKKTVGGKEGDLIHTIMREKGNVVCCNFFTGIQQVVN 467

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 468 FWLL---------------------------------------HN-------GFSIGIGD 481

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T  +I   I +AKE V ++I  A    L   PG T+R++FE++V++ LN ARD 
Sbjct: 482 TIADAATMTDITRTIDEAKEKVQQIITDAEANKLPAEPGMTVRESFEHKVSQTLNQARDV 541

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ SL + NN+K MV+AGSKGS INISQ+ ACVGQQ VEGKRIPFGF+ RTLPHF 
Sbjct: 542 AGRSAEISLKDSNNVKQMVIAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPHFT 601

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PESRGF+ENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E V
Sbjct: 602 KDDYSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDV 661

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MV YD TVRNS+G +IQ  YGEDGL G  VE Q IDT+  S + FE +YR D  ++  +L
Sbjct: 662 MVQYDTTVRNSLGDIIQFIYGEDGLDGAQVEKQTIDTIPGSDEAFERRYRIDLMDQEKSL 721



 Score =  146 bits (369), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF+ RTLPHF KDDY PESRGF+ENSYL GLTP EFFFHAM
Sbjct: 572  SQMSACVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPESRGFIENSYLRGLTPQEFFFHAM 631

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 632  AGREGLIDTAVKTAETGYIQRRLVKALEDVMVQYDTTVRNSL 673



 Score =  101 bits (251), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 89/166 (53%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD TVRNS+G +IQ  YGEDGL G  VE Q IDT+  S + FE
Sbjct: 648 GYIQRRLVKALEDVMVQYDTTVRNSLGDIIQFIYGEDGLDGAQVEKQTIDTIPGSDEAFE 707

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YR D  ++    +  N  +L                                +V  E+
Sbjct: 708 RRYRIDLMDQ---EKSLNPSLL--------------------------------EVGNEI 732

Query: 712 MGSGDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVI 756
           +G   V   L++E+ +L +DR+ LR ++F +G++N  LP NL  VI
Sbjct: 733 IGDISVQRVLDEEFAQLLDDRQYLRNKVFLNGDNNWPLPVNLRRVI 778



 Score = 73.9 bits (180), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 45/61 (73%)

Query: 951  PSVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ 1010
            P + G+D L+K+A ENATLLF+CLVRS L  K V E Y L+  AF W++GEIE++F +A 
Sbjct: 812  PIIRGDDYLTKEAQENATLLFKCLVRSRLAAKRVFEEYHLNRHAFLWVIGEIESQFSRAI 871

Query: 1011 V 1011
            V
Sbjct: 872  V 872



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 24/123 (19%)

Query: 1498 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPEDQEFVN 1557
            QI++PQ+N+PVMGIVQD+L  +RK+TKRD F+                       +E ++
Sbjct: 323  QIVSPQSNKPVMGIVQDSLCGIRKLTKRDTFITF---------------------EEMMD 361

Query: 1558 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPTDKKL 1617
            +   +PD++   + P ++R    +   T K++    I + IN    ++    LSPTD  +
Sbjct: 362  ILMWVPDWNGIVVQPAIIR---PKPLWTGKQVISMCIPKGINIQRYEEGTGKLSPTDNGM 418

Query: 1618 TME 1620
             ++
Sbjct: 419  LVD 421


>gi|120561201|gb|ABM26986.1| RNA polymerase II largest subunit, partial [Pichia kudriavzevii]
          Length = 1647

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/421 (50%), Positives = 266/421 (63%), Gaps = 57/421 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MN+  ++P WDG +PQP ILKPKPLW+GKQ+ SL IP  + + R   +         
Sbjct: 469 DQVMNMCYWIPDWDGVVPQPAILKPKPLWSGKQILSLCIPNGIFLQRLDGS--------- 519

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
               SP D+ +++ +G ++ G++ K ++G S+G L+H    E G   C + +GNIQ VVN
Sbjct: 520 --LTSPKDSGMLIVNGEIMFGVVNKATVGASAGGLIHTTMREKGPTTCAKMFGNIQKVVN 577

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 578 YWLL---------------------------------------HN-------GFSIGIGD 591

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
            IADP+T   I   IK+AK+ V  VI++A    LE  PG TLR++FE +V++ILN+ARD 
Sbjct: 592 AIADPETMKTITETIKEAKDKVQTVIREAQKNLLEAEPGMTLRESFEQKVSKILNEARDA 651

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ SL + NN+K MV AGSKGS INISQ+ ACVGQQ VEGKRI FGF  R+LPHF 
Sbjct: 652 AGKSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLPHFT 711

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
            DDY  ES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 712 TDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDI 771

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
           MVHYD T RNS+G +IQ  YGEDGL    VE Q +DT+  S+  FE KYR D  +E+ ++
Sbjct: 772 MVHYDGTTRNSLGDVIQFIYGEDGLDATTVEKQTVDTIPGSNAAFEKKYRVDLMDEKKSI 831

Query: 493 R 493
           R
Sbjct: 832 R 832



 Score =  342 bits (877), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 200/479 (41%), Positives = 281/479 (58%), Gaps = 55/479 (11%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G+     +A EN+TLLFQCL+RS L T+ V E Y+L+ +AFEW+VG I  +F ++   
Sbjct: 924  VRGDGGCLTEARENSTLLFQCLIRSKLATRRVLEEYKLNKDAFEWVVGTIAQQFARSLVN 983

Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
              +++  V  Q+                 V  K +  G  R + + +  K+   P    +
Sbjct: 984  PGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNFKTPALTVY 1043

Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
            +E  Y   +            +   I +A++     NV       TA T IYYDPDP+ T
Sbjct: 1044 LEEEYATDIE-----------KAKSIQSAIEHTSLKNV-------TACTEIYYDPDPRTT 1085

Query: 1110 VIPEDQEFVNVYYEMPDF----DPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFG 1165
            VI ED + V  Y+ +PD     +  + SPWLLR+ELDR +M DK+L+M+ ++ KI   FG
Sbjct: 1086 VIEEDFDTVEAYFAIPDEKVEENLHKQSPWLLRLELDRAKMLDKQLSMQQVAAKIMENFG 1145

Query: 1166 DDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQG 1225
            DDL  I+++DNA+KLV+R RI+  + +  ++EED  D +     L+ +EA ML  +TL+G
Sbjct: 1146 DDLFVIWSEDNADKLVIRCRIVREEKALDEEEEDTEDGL-----LKALEAQMLESITLRG 1200

Query: 1226 IEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSN 1285
            +  I +V+M         +  I E G+F    +W+LETDG +L  V++   +D  RT+SN
Sbjct: 1201 VSGISRVFMM-----KYDKTYIAEDGDFAKKQEWVLETDGINLADVITVEGIDTTRTYSN 1255

Query: 1286 DICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1345
               EI  V GIEA R ++ KE+  V+ F G YVNYRHLALL D+MT KGHL+AI+RHG N
Sbjct: 1256 SFVEILFVFGIEAARSALYKEILNVIAFDGSYVNYRHLALLVDLMTYKGHLIAISRHGFN 1315

Query: 1346 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
            R DTGALMRCSFEETV++L DA A AE D   GVS+NII+GQ+   GTG FD+ LD EK
Sbjct: 1316 RNDTGALMRCSFEETVEILFDAGASAELDTCDGVSQNIILGQMAPFGTGSFDVYLDDEK 1374



 Score =  149 bits (375), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/265 (37%), Positives = 131/265 (49%), Gaps = 70/265 (26%)

Query: 751  NLMEVIFI--LQRWKLWGNENLRFLCKIIFVLSV---RKSVEKEMNTVLQFYGLYVNYRH 805
            NL +VI +  +   + + N       +I+FV  +   R ++ KE+  V+ F G YVNYRH
Sbjct: 1237 NLADVITVEGIDTTRTYSNS----FVEILFVFGIEAARSALYKEILNVIAFDGSYVNYRH 1292

Query: 806  LALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSEN 865
            LALL D+MT KGHL+AI+RHG NR DTGALMRCSFEETV++L DA A AE D   GVS+N
Sbjct: 1293 LALLVDLMTYKGHLIAISRHGFNRNDTGALMRCSFEETVEILFDAGASAELDTCDGVSQN 1352

Query: 866  IIMGQLPRMGTGCFDLLLDAEKCK-------------------------------DGIEI 894
            II+GQ+   GTG FD+ LD EK                                 D I+I
Sbjct: 1353 IILGQMAPFGTGSFDVYLDDEKLAALPSENPVDVISTAKDTKGSMTVYGDDHFKDDIIDI 1412

Query: 895  PLA-----------TGMMGGPAGMF----------------FGSAATPSSMSPQMTPWAQ 927
            P+A            G     +G F                FG  AT  S  P    +  
Sbjct: 1413 PMAADNVAFSPLITAGSGDDRSGGFTEYGSGNMSAYQPTSPFGYGATSPSYGPTSPSYGP 1472

Query: 928  STPAYNALMSPGAAMTPGGPGFSPS 952
            ++P+Y+   SP  A +P  P +SP+
Sbjct: 1473 TSPSYSP-TSP--AYSPTSPAYSPT 1494



 Score =  135 bits (339), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/102 (62%), Positives = 76/102 (74%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRI FGF  R+LPHF  DDY  ES+GFVENSYL GLTP EFFFHAM
Sbjct: 682  SQMSACVGQQIVEGKRINFGFADRSLPHFTTDDYSAESKGFVENSYLRGLTPQEFFFHAM 741

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 742  AGREGLIDTAVKTAETGYIQRRLLKALEDIMVHYDGTTRNSL 783



 Score =  111 bits (278), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 65/88 (73%)

Query: 515  TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
            +++ KE+  V+ F G YVNYRHLALL D+MT KGHL+AI+RHG NR DTGALMRCSFEET
Sbjct: 1271 SALYKEILNVIAFDGSYVNYRHLALLVDLMTYKGHLIAISRHGFNRNDTGALMRCSFEET 1330

Query: 575  VDVLMDAAAHAEADPMRGYIQRRLIKAM 602
            V++L DA A AE D   G  Q  ++  M
Sbjct: 1331 VEILFDAGASAELDTCDGVSQNIILGQM 1358



 Score =  105 bits (261), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/179 (36%), Positives = 95/179 (53%), Gaps = 42/179 (23%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G +IQ  YGEDGL    VE Q +DT+  S+  FE
Sbjct: 758 GYIQRRLLKALEDIMVHYDGTTRNSLGDVIQFIYGEDGLDATTVEKQTVDTIPGSNAAFE 817

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            KYR D  +E++                      +  ++V++ S              E+
Sbjct: 818 KKYRVDLMDEKK---------------------SIRPDVVEYGS--------------EI 842

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEV------IFILQRWK 763
           +G   +   L++E+E+L +DRE LR  +F  GE+N  LP N+  +      IF + R+K
Sbjct: 843 LGDIKLQKILDEEYEQLLKDREYLRTVVFPDGENNWPLPVNVRRIVQNAQQIFHVDRYK 901



 Score = 91.7 bits (226), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 32/129 (24%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDF----DPTRISPWLLRIELDRKRM 1584
            L  VTA T IYYDPDP+ TVI ED + V  Y+ +PD     +  + SPWLLR+ELDR +M
Sbjct: 1067 LKNVTACTEIYYDPDPRTTVIEEDFDTVEAYFAIPDEKVEENLHKQSPWLLRLELDRAKM 1126

Query: 1585 TDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAE 1644
             DK+L+M+                             ++ KI   FGDDL  I+++DNA+
Sbjct: 1127 LDKQLSMQQ----------------------------VAAKIMENFGDDLFVIWSEDNAD 1158

Query: 1645 KLVLRIRIM 1653
            KLV+R RI+
Sbjct: 1159 KLVIRCRIV 1167



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 39/56 (69%), Gaps = 1/56 (1%)

Query: 1496 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPE 1551
            P QII+PQ+N+PVMGIVQDTL  VRKMT RD F++        Y+ PD  + V+P+
Sbjct: 433  PLQIISPQSNKPVMGIVQDTLCGVRKMTLRDTFIEYDQVMNMCYWIPD-WDGVVPQ 487


>gi|78190749|gb|ABB29696.1| DNA-directed RNA polymerase II largest subunit [Aphrocallistes
           vastus]
          Length = 365

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/327 (61%), Positives = 241/327 (73%), Gaps = 46/327 (14%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           ++ MMN+LM+ P WDG+MPQP I+KPKP+WTGKQ+FSL+IPGNVN T T STHPD+ED+ 
Sbjct: 85  RDDMMNLLMWYPEWDGRMPQPAIIKPKPMWTGKQLFSLVIPGNVNCTNTCSTHPDEEDNT 144

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
           P + IS GDT+V++E+  L+ GI+CKK++G S  SL+HI  LELG E     + NIQTVV
Sbjct: 145 PSRNISVGDTRVLIENSELISGIICKKTVGRSGSSLIHIVALELGPEPARCLFNNIQTVV 204

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           NNWLL+EG                                              HS+GIG
Sbjct: 205 NNWLLIEG----------------------------------------------HSMGIG 218

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTIAD QTYL IQ  IKK+K  V +VI++AHN  L+P+PGNTLRQTFEN VN+ILN+ARD
Sbjct: 219 DTIADHQTYLNIQETIKKSKIQVTDVIKQAHNDQLKPSPGNTLRQTFENNVNKILNNARD 278

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
           +TG SA+KSL+++NN+KAMVV+G+KGS INISQVIACVGQQNVEGKRIPFGFR RTLPHF
Sbjct: 279 QTGSSAQKSLSDFNNMKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHF 338

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFF 398
           IKDDYGPESRGFVENSYLAGLTP+E F
Sbjct: 339 IKDDYGPESRGFVENSYLAGLTPNEMF 365



 Score =  119 bits (297), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/65 (81%), Positives = 57/65 (87%)

Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
            G   ++   +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 301  GAKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLT 360

Query: 1060 PSEFF 1064
            P+E F
Sbjct: 361  PNEMF 365



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/35 (74%), Positives = 33/35 (94%)

Query: 1497 RQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            + II+PQ+N+PVMGIVQDTLTAV KMTKRDVF+++
Sbjct: 51   KHIISPQSNKPVMGIVQDTLTAVCKMTKRDVFIER 85


>gi|397135820|gb|AFO11405.1| RNA polymerase I, partial [Saccharomycopsis capsularis]
          Length = 871

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/412 (51%), Positives = 268/412 (65%), Gaps = 55/412 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MNI  ++  W+G +PQP ILKPKPLWTGKQV S+ IP  +N+ R        E+   
Sbjct: 357 DQVMNICYWIKDWNGIVPQPTILKPKPLWTGKQVLSMGIPEGINLIRF-------EEKTT 409

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
           Y  +SP D  +++ +G ++ G++ KK++G+S+G L+H  F E GH+VC + +GNIQ +VN
Sbjct: 410 Y--LSPQDDGMLIVNGEIMFGVVNKKTVGSSAGGLIHTVFREKGHKVCAQLFGNIQKIVN 467

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 468 YWLL---------------------------------------HN-------GFSIGIGD 481

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T   I   I +AK+ V EVI  AH   L+P PG TLR+ FE  V ++LN ARD 
Sbjct: 482 TIADKTTMTRITTTINEAKQKVQEVILDAHANRLQPEPGMTLREAFEANVAQLLNKARDD 541

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G  ++KSL + NN+K MV++GSKGS INISQ+ ACVGQQ VEGKRIPFGF  RTLPHF 
Sbjct: 542 VGKYSEKSLKDSNNVKQMVISGSKGSFINISQMSACVGQQMVEGKRIPFGFADRTLPHFT 601

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDD+ PES+GF+ENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 602 KDDFSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 661

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            VHYD TVRNS G ++Q  YGEDGL G  VE Q +D++  S + FE++Y+ D
Sbjct: 662 TVHYDGTVRNSTGTVLQFIYGEDGLDGTQVESQPLDSLPASEETFENRYKID 713



 Score =  144 bits (362), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 66/101 (65%), Positives = 78/101 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF  RTLPHF KDD+ PES+GF+ENSYL GLTP EFFFHAM
Sbjct: 572  SQMSACVGQQMVEGKRIPFGFADRTLPHFTKDDFSPESKGFIENSYLRGLTPQEFFFHAM 631

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N+
Sbjct: 632  AGREGLIDTAVKTAETGYIQRRLVKALEDITVHYDGTVRNS 672



 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 87/165 (52%), Gaps = 35/165 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E + VHYD TVRNS G ++Q  YGEDGL G  VE Q +D++  S + FE
Sbjct: 648 GYIQRRLVKALEDITVHYDGTVRNSTGTVLQFIYGEDGLDGTQVESQPLDSLPASEETFE 707

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
           ++Y+ D                  LM S  +I     E  D                 ++
Sbjct: 708 NRYKID------------------LMDSSKMIKPSLIEYGD-----------------DI 732

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
            G  ++ + L++E+E+L +DR  LRE+F +GE    LP NL  V+
Sbjct: 733 RGDAELQNMLDEEYEQLRKDRLFLREVFPTGEHKWPLPVNLRRVV 777



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 44/59 (74%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            + GE +L  +A ENATLLFQCL+RS L ++ V E +RL+ +AF W++G++E  FQ++ V
Sbjct: 813  IRGEGELVTEAQENATLLFQCLIRSRLASRRVIEEFRLNKDAFNWVIGKVEELFQRSVV 871



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 24/126 (19%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            ++N+   P QII+PQ+N+PVMGIVQDTL  VRKMT +D+F++         YD       
Sbjct: 314  LKNLAAVPLQIISPQSNKPVMGIVQDTLCGVRKMTLKDIFIE---------YD------- 357

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNT 1608
                 + +N+ Y + D++     P +L+    +   T K++    I E IN    ++  T
Sbjct: 358  -----QVMNICYWIKDWNGIVPQPTILK---PKPLWTGKQVLSMGIPEGINLIRFEEKTT 409

Query: 1609 PLSPTD 1614
             LSP D
Sbjct: 410  YLSPQD 415


>gi|397135918|gb|AFO11454.1| RNA polymerase I, partial [Citeromyces matritensis]
          Length = 860

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/412 (50%), Positives = 264/412 (64%), Gaps = 56/412 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+M++L ++P WDG +PQP ILKPKPLW+GKQ+FS+ IP  +++ R         D   
Sbjct: 355 DQVMSMLFWIPQWDGVIPQPAILKPKPLWSGKQLFSMAIPRGIHLLRL--------DGAT 406

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
           Y  +SP DT +++ +G ++ G++ KK++G++ G L+H    E G  +C   +GNIQ VVN
Sbjct: 407 Y--LSPNDTGMMIRNGEVMFGVVDKKTVGSAGGGLVHTVMREKGSAICSDLFGNIQKVVN 464

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 465 FWLL---------------------------------------HN-------GFSIGIGD 478

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T  EI   I +AKE+V E+I  A +  LE  PG TLR+T E++V+R LN ARD 
Sbjct: 479 TIADGSTMREITDTITRAKEEVQEIILDAQSNQLEAEPGMTLRETXESKVSRTLNQARDS 538

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ SL + NN+K MV +GSKGS INISQ+ ACVGQQ VEGKRIPFGF  R+LPHF 
Sbjct: 539 AGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRSLPHFT 598

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GFVENSYL GLTP EFFFHAM GREGL DTAVKTA TGYIQRRL+KA+E +
Sbjct: 599 KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLXDTAVKTASTGYIQRRLVKALEDI 658

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           MVHYD T RNS+G ++Q  YGEDGL G  VE Q +DT+  S   F  +Y+ D
Sbjct: 659 MVHYDGTTRNSLGDIVQFIYGEDGLDGTQVEKQPVDTIPGSDADFMKRYKVD 710



 Score =  140 bits (353), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 77/102 (75%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF  R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 569  SQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 628

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGL DTAVKTA T  +   L +   +  ++YD   +N++
Sbjct: 629  AGREGLXDTAVKTASTGYIQRRLVKALEDIMVHYDGTTRNSL 670



 Score =  101 bits (251), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 88/166 (53%), Gaps = 36/166 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G ++Q  YGEDGL G  VE Q +DT+  S   F 
Sbjct: 645 GYIQRRLVKALEDIMVHYDGTTRNSLGDIVQFIYGEDGLDGTQVEKQPVDTIPGSDADFM 704

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +Y+ D                  LM  G        E VD+ +              E+
Sbjct: 705 KRYKVD------------------LMTPG---GGXRHEAVDYGT--------------EI 729

Query: 712 MGSGDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVI 756
           +G  ++   L++E+++L EDR+ LR E+F +G+ N  LP NL  VI
Sbjct: 730 LGDVELQKYLDQEYDQLVEDRKFLRNEVFLNGDYNWPLPVNLRRVI 775



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)

Query: 1496 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPE 1551
            P QI++PQ+N+PVMGIVQDTL  VRKMT RD F+D     + +++ P   + VIP+
Sbjct: 319  PSQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIDYDQVMSMLFWIPQ-WDGVIPQ 373



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 35/48 (72%)

Query: 955  GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 1002
            GE +L ++A +NAT LFQCL+RS   T+ V E +RLS  AFEW++G I
Sbjct: 813  GESRLIEEAQQNATRLFQCLIRSRXATRRVLEEFRLSHAAFEWVLGTI 860



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 35 LGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
          LG +  F+RP+W+LVTV+PVPP  VRP++ M  + R+++ +
Sbjct: 33 LGFNEDFSRPEWLLVTVIPVPPPQVRPSIAMSETMRSEDDL 73


>gi|21280521|gb|AAM45153.1|AF395835_1 RNA polymerase II largest subunit [Cercomonas ATCC50319]
          Length = 1014

 Score =  409 bits (1050), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/420 (50%), Positives = 272/420 (64%), Gaps = 53/420 (12%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++  + NILM L  WDG +P PCILKP PLW+GKQ+FSLIIP  VNM R  + HPD E  
Sbjct: 472 DKAMVFNILMHLENWDGTVPIPCILKPVPLWSGKQIFSLIIP-RVNMERKANGHPDSE-- 528

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
             +  +S  DT+V +E G LLMG++ K+++G + GSL+H+ + E G E   +F    Q V
Sbjct: 529 --HTVMSVNDTRVRIEQGQLLMGVVDKQTVGNTPGSLIHVIWNECGFEATRQFLAECQKV 586

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN +L+   H                                            G S+GI
Sbjct: 587 VNYFLM---HY-------------------------------------------GFSVGI 600

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTIA P T  +I+  IK+AK++V+ +I+KA + +L+  PG+T  ++FENQVN +LN A 
Sbjct: 601 GDTIAPPSTLEKIESTIKQAKKEVLNLIKKAXSGNLDRQPGSTNLESFENQVNGVLNKAA 660

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           D  G S K  LT+ NN+ AMV AGSKG+ INI Q+IACVGQQNV GKRIPFGF  RTLPH
Sbjct: 661 DDAGKSVKAQLTKMNNINAMVSAGSKGNAINICQIIACVGQQNVSGKRIPFGFHGRTLPH 720

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F K D  PES+GFV NSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KAME
Sbjct: 721 FNKGDLSPESKGFVSNSYLQGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAME 780

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
            VM+ YD TVRNS+G +IQ  YGEDG+ G  +E Q++D++ + + +F   Y+ D S  RP
Sbjct: 781 DVMIKYDATVRNSLGDIIQFAYGEDGMDGVYIEKQKLDSLKMDNARFLKTYQLDVS--RP 838



 Score =  144 bits (364), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 78/112 (69%)

Query: 999  VGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 1058
             G   N     Q+IACVGQQNV GKRIPFGF  RTLPHF K D  PES+GFV NSYL GL
Sbjct: 683  AGSKGNAINICQIIACVGQQNVSGKRIPFGFHGRTLPHFNKGDLSPESKGFVSNSYLQGL 742

Query: 1059 TPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            TP EFFFHAMGGREGLIDTAVKTAET  +   L +   +  I YD   +N++
Sbjct: 743  TPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDVMIKYDATVRNSL 794



 Score = 94.4 bits (233), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 86/171 (50%), Gaps = 37/171 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KAME VM+ YD TVRNS+G +IQ  YGEDG+ G  +E Q++D++ + + +F 
Sbjct: 769 GYIQRRLVKAMEDVMIKYDATVRNSLGDIIQFAYGEDGMDGVYIEKQKLDSLKMDNARFL 828

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             Y+ D S   QL                                       + +V   L
Sbjct: 829 KTYQLDVSRPEQL------------------------------------DFMDAEVREHL 852

Query: 712 MGSGDVISELEKEWEKLCEDREALRE-IFSSGESNVVLPCNLMEVIFILQR 761
           + + +    LE E ++L +DR+ LR+ I  +GE  V LP NL  +I+  Q+
Sbjct: 853 LRTPEAHDALETELKQLRDDRQLLRDKIQPTGEDMVHLPVNLKRLIWNAQK 903



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 46/73 (63%), Gaps = 5/73 (6%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
            V G D LS QA  NAT LF+ ++RS L  K V ++YRL+ +AF WL+GEIE RF QA   
Sbjct: 934  VRGTDPLSLQAQTNATTLFKIMLRSVLSAKRVLKDYRLNRDAFSWLIGEIEARFNQAIVH 993

Query: 1010 --QVIACVGQQNV 1020
              +V+  +  Q +
Sbjct: 994  PGEVVGSIAAQAI 1006



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 30/41 (73%)

Query: 1492 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 1532
            I + PRQI++PQ N+PV+GIVQDTL    K T RD FLDK 
Sbjct: 434  IMLCPRQIVSPQANKPVIGIVQDTLLGCMKFTYRDNFLDKA 474


>gi|397135848|gb|AFO11419.1| RNA polymerase I, partial [Eremothecium cymbalariae]
          Length = 871

 Score =  409 bits (1050), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/415 (51%), Positives = 270/415 (65%), Gaps = 55/415 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q++N+L ++P WDG +P+P ILKPKPLW+GKQ+ S+ IP  +++ R       DE +  
Sbjct: 357 DQVLNMLYWIPDWDGVIPKPTILKPKPLWSGKQLLSMAIPNGIHLQRF------DEGT-- 408

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
             ++SP D  +++  G ++ G++ KK++G+SSG L+H+   E G +VC + +GNIQ VVN
Sbjct: 409 -TYLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQVCAKLFGNIQKVVN 467

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 468 YWLL---------------------------------------HN-------GFSIGIGD 481

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD +T  EI  AI  AK+ V EV ++A    L    G TLR++FE+ V R LN+ARDK
Sbjct: 482 TIADEKTMREITEAIALAKKRVQEVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDK 541

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ +L + NN+K MV AGSKGS INI+Q+ ACVGQQ+VEGKRI FGF  RTLPHF 
Sbjct: 542 AGRSAELNLRDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFS 601

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 602 KDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDI 661

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSN 487
           MVHYD T RNS+G +IQ  YGEDG+    +E Q IDT+  S   FE +YR D  N
Sbjct: 662 MVHYDGTTRNSLGNIIQFVYGEDGMDASHIEKQSIDTIPGSDLAFEKRYRIDLLN 716



 Score =  147 bits (372), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 80/102 (78%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            AQ+ ACVGQQ+VEGKRI FGF  RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 572  AQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 632  GGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 673



 Score =  100 bits (250), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 87/165 (52%), Gaps = 35/165 (21%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G +IQ  YGEDG+    +E Q IDT+  S   FE
Sbjct: 648 GYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFVYGEDGMDASHIEKQSIDTIPGSDLAFE 707

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YR               D+L    G       L+  +++  +              E+
Sbjct: 708 KRYRI--------------DLLNPEYG-------LDPSLLESAT--------------EI 732

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
           MG   + + L++E+++L +DR+ LR +F  GE N  LP N+  +I
Sbjct: 733 MGDLKLQNMLDEEYKQLVQDRQLLRSVFLDGEHNWPLPVNIRRII 777



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 24/119 (20%)

Query: 1496 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPEDQEF 1555
            P+QI++PQ+N+P MGIVQDTL  +RKMT RD F+                     E  + 
Sbjct: 321  PQQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFI---------------------ELDQV 359

Query: 1556 VNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPTD 1614
            +N+ Y +PD+D     P +L+    +   + K+L   AI   I+    D+  T LSP D
Sbjct: 360  LNMLYWIPDWDGVIPKPTILK---PKPLWSGKQLLSMAIPNGIHLQRFDEGTTYLSPKD 415



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%)

Query: 955  GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            G   + K+A ENA  LF  LVRS L T+ V   YRL+ + F+W++  IE +F ++ V
Sbjct: 815  GSSNILKEAQENAVTLFCSLVRSRLATRRVLTEYRLTKQTFQWVLNNIEAQFLRSIV 871


>gi|168920044|gb|AAV54050.2| RNA polymerase II largest subunit [Boletellus projectellus]
          Length = 997

 Score =  409 bits (1050), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/416 (50%), Positives = 268/416 (64%), Gaps = 55/416 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+ NIL+++P WDG +P P I+KPKPLWTGKQ+ S++IP  +N+ R     P+ + S P
Sbjct: 459 QQVQNILLWVPEWDGNVPTPAIIKPKPLWTGKQIISMVIPRGINIHRA----PEPKSSNP 514

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
                  D  ++V++G +L GI+ KK++G + G L+H+ F E G E     +  IQ VVN
Sbjct: 515 L-----FDDGMMVDNGEILFGIVDKKTVGATQGGLIHVVFREKGPEATRSVFTGIQMVVN 569

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WL                                        HN       G SIGIGD
Sbjct: 570 FWLF---------------------------------------HN-------GFSIGIGD 583

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIA P     I   IK  K+ V E+I+ A+N  L+P PG T+R++FE++V R LN ARD 
Sbjct: 584 TIAGPNVMEFITRRIKDKKQQVAEIIEDAYNDRLKPMPGMTIRESFESKVERELNRARDD 643

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
           +G  A+K+L E NN+K MV AGSKGS INISQ+  CVGQQ+VEG+RIPFGFR RTLPHF 
Sbjct: 644 SGQYAQKNLKEDNNVKQMVTAGSKGSYINISQMSVCVGQQSVEGRRIPFGFRHRTLPHFT 703

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDD+ PE+RGFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E V
Sbjct: 704 KDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDV 763

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 488
           MV YD TVRNS+G L+Q  YGEDG+ G  +E Q+IDT   S K+FE  YR D +++
Sbjct: 764 MVCYDGTVRNSLGDLVQFIYGEDGMDGAFIERQKIDTFGTSDKEFEHSYRVDVTDK 819



 Score =  143 bits (361), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+  CVGQQ+VEG+RIPFGFR RTLPHF KDD+ PE+RGFVENSYL GLTP EFFFHAM
Sbjct: 674  SQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAM 733

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  + YD   +N++
Sbjct: 734  AGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSL 775



 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 85/168 (50%), Gaps = 39/168 (23%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMV YD TVRNS+G L+Q  YGEDG+ G  +E Q+IDT   S K+FE
Sbjct: 750 GYIQRRLVKALEDVMVCYDGTVRNSLGDLVQFIYGEDGMDGAFIERQKIDTFGTSDKEFE 809

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             YR D +++      F   VL+  +G  D   EL+                        
Sbjct: 810 HSYRVDVTDKEGG---FLPGVLQ--VGIDDSSLELQ------------------------ 840

Query: 712 MGSGDVISELEKEWEKLCEDREALREIF---SSGESNVVLPCNLMEVI 756
                  ++L++E+ +L EDR  LR      + G +   LP NL  +I
Sbjct: 841 -------AKLDEEYARLVEDRRLLRRFIFPHADGLTPHYLPVNLQRII 881



 Score = 67.4 bits (163), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 43/60 (71%)

Query: 952  SVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            SV G+D LSK+   NA+L F+  VR+TL T+ V E Y L+ EAFEW++GEIE +F Q+ V
Sbjct: 916  SVCGDDPLSKEVQANASLTFRMHVRATLATRRVLELYHLNREAFEWVLGEIEAKFNQSLV 975



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 35/55 (63%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPD 1543
            +  I   PRQII+PQ N+PVMGIVQDTL  +RK T RD FLD       + + P+
Sbjct: 416  LSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWQQVQNILLWVPE 470


>gi|397135908|gb|AFO11449.1| RNA polymerase I, partial [Yamadazyma mexicana]
          Length = 863

 Score =  409 bits (1050), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/439 (48%), Positives = 269/439 (61%), Gaps = 63/439 (14%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MN+L ++P WDG +P P ++KPKPLWTGKQ+ S+ IP  +++ R  S          
Sbjct: 355 DQVMNMLYWIPTWDGVIPPPAVMKPKPLWTGKQLLSMAIPKGIHLQRLESN--------- 405

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
                P D  +++  G ++ G++ KK++G + G L+H    E G +VC + + NIQ VVN
Sbjct: 406 --LSCPNDNGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSNIQKVVN 463

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL  G SIGIGDTIAD  T   +   I++AK  V E+I  A    LEP PG       
Sbjct: 464 YWLLHNGFSIGIGDTIADSDTMKTVTTTIEEAKAKVQEIILNAQRNKLEPEPGM------ 517

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
                                                   TLR++FE+ V+R+LN ARD 
Sbjct: 518 ----------------------------------------TLRESFEHNVSRVLNQARDT 537

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ SL + NN+K MVV+GSKGS INISQ+ ACVGQQ VEGKRIPFGF  RTLPHF 
Sbjct: 538 AGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRTLPHFT 597

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 598 KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 657

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD------PS 486
           MVHYD T RNS+G +IQ  YGEDG+ G  VE Q +DT+  S   FE +Y+ D      P 
Sbjct: 658 MVHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSDAAFEKRYKIDLLNDDLPI 717

Query: 487 NERPTLRNVSSLRRVVNSK 505
                ++    L+RV++S+
Sbjct: 718 ESGKEIKGDVELQRVLDSE 736



 Score =  145 bits (367), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF  RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 568  SQMSACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 627

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 628  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 669



 Score = 97.8 bits (242), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 87/166 (52%), Gaps = 41/166 (24%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G +IQ  YGEDG+ G  VE Q +DT+  S   FE
Sbjct: 644 GYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSDAAFE 703

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +Y+ D         + N+D+  E   SG                            +E+
Sbjct: 704 KRYKID---------LLNDDLPIE---SG----------------------------KEI 723

Query: 712 MGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEVI 756
            G  ++   L+ E+E+L +DR  LR + F +G+S+  LP NL  +I
Sbjct: 724 KGDVELQRVLDSEFEQLKQDRHYLRTVCFPNGDSSWPLPVNLRRII 769



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 46/59 (77%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            + G  +L+K+A  NAT+LFQCL+RS L T+ V E ++L+  +FEW++GEIEN+FQ++ V
Sbjct: 805  IRGNSELAKEAQANATMLFQCLLRSRLATRRVIEEFKLNKVSFEWVMGEIENQFQKSTV 863



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 38/62 (61%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   P QI++PQ+N+PVMGIVQDTL  +RKMT RD F++       +Y+ P     +
Sbjct: 312  LSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDSFIEYDQVMNMLYWIPTWDGVI 371

Query: 1549 IP 1550
             P
Sbjct: 372  PP 373


>gi|397135904|gb|AFO11447.1| RNA polymerase I, partial [Meyerozyma guilliermondii]
          Length = 872

 Score =  408 bits (1049), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/412 (50%), Positives = 264/412 (64%), Gaps = 55/412 (13%)

Query: 73  EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
           +Q+MN+L ++P WDG +P P ++KPKPLWTGKQ+ S+ IP  +++ R           G 
Sbjct: 357 DQVMNMLYWIPDWDGVIPPPAVIKPKPLWTGKQLLSMAIPKGIHIQRL---------DGG 407

Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
              +SP DT +++  G ++ G++ KK++G +SG L+H    E G +VC + +  +Q VVN
Sbjct: 408 TSMLSPKDTGILIVDGEIMFGVVDKKTVGATSGGLIHTVMREKGPQVCAKLFSALQKVVN 467

Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
            WLL                                       HN       G SIGIGD
Sbjct: 468 YWLL---------------------------------------HN-------GFSIGIGD 481

Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
           TIAD  T   +   I++AK+ V E+I  A    LEP PG TLR++FE+ V+R+LN ARD 
Sbjct: 482 TIADSDTMKTVTTTIEEAKQKVQEIILDAQKNRLEPEPGMTLRESFEHNVSRVLNQARDT 541

Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
            G SA+ +L + NN+K MVV+GSKGS INISQ+ ACVGQQ VEGKRIPFGF  R+LPHF 
Sbjct: 542 AGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRSLPHFT 601

Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
           KDDY PES+GFVENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 602 KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 661

Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
           MVHYD T RNS+G +IQ  YGEDG+ G  VE Q +D +  + + FE +YR D
Sbjct: 662 MVHYDGTTRNSLGDIIQFVYGEDGVDGTQVESQSVDVIPGTDESFERRYRVD 713



 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ ACVGQQ VEGKRIPFGF  R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 572  SQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 632  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 673



 Score =  101 bits (252), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 106/223 (47%), Gaps = 50/223 (22%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E +MVHYD T RNS+G +IQ  YGEDG+ G  VE Q +D +  + + FE
Sbjct: 648 GYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGVDGTQVESQSVDVIPGTDESFE 707

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            +YR D  +  +  R         L+ SG                            +E+
Sbjct: 708 RRYRVDLLDPEKCIR-------DSLLESG----------------------------KEV 732

Query: 712 MGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEVIFILQRWKLWGN--- 767
            G  ++   L++E+E+LC DR  LRE+ F++G+    LP NL  +I   Q+    G    
Sbjct: 733 RGDVNLQRVLDEEYEQLCNDRRYLREVCFTNGDYTWPLPVNLRRIIQNAQQLFHGGRHKA 792

Query: 768 ---------ENLRFLCKIIFVLSVRKSVEKEM--NTVLQFYGL 799
                    E ++ LCK + VL     + KE   N  L F  L
Sbjct: 793 SDLRLEEIVEGVKELCKKLLVLRGDSPLVKESQENATLLFQCL 835



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 44/57 (77%)

Query: 955  GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            G+  L K++ ENATLLFQCLVRS L T+ V E +RL+  +FEW++GEIE +FQ++ V
Sbjct: 816  GDSPLVKESQENATLLFQCLVRSRLATRRVIEEFRLNRMSFEWVMGEIETQFQKSLV 872



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 24/126 (19%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  I   P QI++PQ+N+PVMGIVQDTL  VRKMT RD+F++         YD       
Sbjct: 314  LSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIE---------YD------- 357

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNT 1608
                 + +N+ Y +PD+D     P +++    +   T K+L   AI + I+    D   +
Sbjct: 358  -----QVMNMLYWIPDWDGVIPPPAVIK---PKPLWTGKQLLSMAIPKGIHIQRLDGGTS 409

Query: 1609 PLSPTD 1614
             LSP D
Sbjct: 410  MLSPKD 415


>gi|123979354|gb|ABM81502.1| RNA polymerase II largest subunit [Parmeliella sp. AFTOL 334]
          Length = 982

 Score =  408 bits (1049), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/414 (50%), Positives = 266/414 (64%), Gaps = 56/414 (13%)

Query: 71  NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
           ++EQ+MNIL+++P WDG +PQP ILKP+P WTGKQ+ SL+IP  +N+ R          +
Sbjct: 457 SKEQVMNILLWVPDWDGILPQPAILKPRPKWTGKQIISLVIPSGLNLNR----------A 506

Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
           G   +    D  ++V  G L+ G+L KKS+G +S  ++HI F E G E   +F+   QTV
Sbjct: 507 GGEGFSPVNDDGLLVSGGKLMYGLLNKKSVGATSSGIIHIIFNEKGPEAAMKFFNGAQTV 566

Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
           VN WLL                                       HN       G SIGI
Sbjct: 567 VNYWLL---------------------------------------HN-------GFSIGI 580

Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
           GDTI D  T  +I+ A+ K KEDV E+ + A   +LEP PG  +R+TFE++V++ LN AR
Sbjct: 581 GDTIPDRNTIQQIEDAVNKQKEDVAEITRSATENELEPLPGMNVRETFESKVSKALNKAR 640

Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
           D  G   +KSL + NN   M ++GSKGS INISQ+ A VGQQ+VEGKRIPFGF+ RTLPH
Sbjct: 641 DDAGTVTEKSLKDLNNATQMALSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH 700

Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
           F KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDTAV+TAETGYIQRRL+KA+E
Sbjct: 701 FTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVETAETGYIQRRLVKALE 760

Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
            VM  YD TVRNS+G ++Q  YGEDGL G  +E QR+D +  S ++F+ K+R D
Sbjct: 761 DVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIESQRVDIITCSDEQFKKKFRVD 814



 Score =  142 bits (358), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 79/102 (77%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ A VGQQ+VEGKRIPFGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM
Sbjct: 673  SQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 732

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
             GREGLIDTAV+TAET  +   L +   +    YD   +N++
Sbjct: 733  AGREGLIDTAVETAETGYIQRRLVKALEDVMAKYDGTVRNSL 774



 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 33/165 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VM  YD TVRNS+G ++Q  YGEDGL G  +E QR+D +  S ++F+
Sbjct: 749 GYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIESQRVDIITCSDEQFK 808

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
            K+R D  + RQ                    + +  E ++H              ++++
Sbjct: 809 KKFRVDLMDPRQE-------------------TTISPEFLEH--------------VQDM 835

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
            G  ++ + L++E+++L   RE LR         + LP N++ ++
Sbjct: 836 FGDSNLQAYLDEEYDQLKAAREFLRMNKQDDNDQLQLPINIIRIL 880



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 51/213 (23%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
            +  + + P  I++PQ N P+MGIVQDTL  + K+ +RDVFL K                 
Sbjct: 416  INQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSK----------------- 458

Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKIN------AGF 1602
                ++ +N+   +PD+D     P +L+    R + T K++    I   +N       GF
Sbjct: 459  ----EQVMNILLWVPDWDGILPQPAILK---PRPKWTGKQIISLVIPSGLNLNRAGGEGF 511

Query: 1603 GDDLNTPLSPTDKKLTMEAISEK-INAGFGDDLNCIFNDD---------NAEKLVLRIRI 1652
                +  L  +  KL    +++K + A     ++ IFN+          N  + V+   +
Sbjct: 512  SPVNDDGLLVSGGKLMYGLLNKKSVGATSSGIIHIIFNEKGPEAAMKFFNGAQTVVNYWL 571

Query: 1653 MNS-----------DDSKMQDEEDAVDKMEDDM 1674
            +++           D + +Q  EDAV+K ++D+
Sbjct: 572  LHNGFSIGIGDTIPDRNTIQQIEDAVNKQKEDV 604



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
            V G+D LSK+   NATLLF+  +RS L  K +     L+  AF+ ++GEIE+RF +A V
Sbjct: 916  VRGDDDLSKEGQHNATLLFKAQLRSRLAFKRLVVESSLNKLAFQHVLGEIESRFCRAAV 974


>gi|157841417|gb|ABV83167.1| RNA polymerase 2 [Cruznema tripartitum]
          Length = 335

 Score =  408 bits (1049), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/256 (75%), Positives = 223/256 (87%), Gaps = 1/256 (0%)

Query: 1091 LFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1150
            L +VTANTAIYYDPDP+NT I ED+E+V+++YEMPDFDP+R SPWLLR+ELDRKRMTDKK
Sbjct: 81   LRKVTANTAIYYDPDPKNTCIEEDEEWVSIFYEMPDFDPSRSSPWLLRLELDRKRMTDKK 140

Query: 1151 LTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFL 1210
            LTME I+++I+ GFGDDLN I+ DDNA+KLV R+RI   D  K  DEE  VDKMEDDMFL
Sbjct: 141  LTMEQIADRIHQGFGDDLNVIYTDDNADKLVFRLRITXQDGDKGGDEE-QVDKMEDDMFL 199

Query: 1211 RCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMK 1270
            RCIE+NMLSD+TLQGI +I KVYMH P TD KKR+IIT  G FKAI +W+LETDGT+L+K
Sbjct: 200  RCIESNMLSDLTLQGITSISKVYMHKPTTDDKKRVIITPEGGFKAIPEWILETDGTALLK 259

Query: 1271 VLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVM 1330
            VLSE+ VDPVRT SNDICEIF++LGIEAVRKS+E+EMN V+ F G YVNYRHLALLCDVM
Sbjct: 260  VLSEQHVDPVRTTSNDICEIFEILGIEAVRKSIEREMNNVISFDGSYVNYRHLALLCDVM 319

Query: 1331 TAKGHLMAITRHGINR 1346
            TAKGHLMAITRHGINR
Sbjct: 320  TAKGHLMAITRHGINR 335



 Score =  179 bits (453), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/152 (59%), Positives = 106/152 (69%), Gaps = 29/152 (19%)

Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
            L KVTANTAIYYDPDP+NT I ED+E+V+++YEMPDFDP+R SPWLLR+ELDRKRMTDKK
Sbjct: 81   LRKVTANTAIYYDPDPKNTCIEEDEEWVSIFYEMPDFDPSRSSPWLLRLELDRKRMTDKK 140

Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
            LTME I+++I+ GFG                            DDLN I+ DDNA+KLV 
Sbjct: 141  LTMEQIADRIHQGFG----------------------------DDLNVIYTDDNADKLVF 172

Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
            R+RI   D  K  DEE  VDKMEDDMFLRCIE
Sbjct: 173  RLRITXQDGDKGGDEE-QVDKMEDDMFLRCIE 203



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/60 (73%), Positives = 51/60 (85%), Gaps = 3/60 (5%)

Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
           +C+I  +L   +VRKS+E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 276 ICEIFEILGIEAVRKSIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 335



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/45 (84%), Positives = 41/45 (91%)

Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 560
           S+E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 291 SIEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 335


>gi|83320442|gb|ABC02848.1| RNA polymerase II largest subunit, partial [Zancudomyces culisetae]
          Length = 983

 Score =  408 bits (1049), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/425 (49%), Positives = 266/425 (62%), Gaps = 50/425 (11%)

Query: 72  QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
           Q+ +M++L+ +P WDG +P PCILKP+PLW+GKQ++SL+IP  +N       HPD E S 
Sbjct: 464 QDLVMDLLLKVPGWDGMIPPPCILKPQPLWSGKQLYSLLIPDGINCYTFLKEHPDLETS- 522

Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
              W SPGDT+VVVE+G LL GI+CK+++G   G L+H  F ELG E    F G  Q V+
Sbjct: 523 ---WSSPGDTRVVVENGVLLSGIVCKQTVGAVRGGLVHTIFNELGPEATKVFLGGTQRVI 579

Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
           N WL+                                              T G SIGIG
Sbjct: 580 NQWLV----------------------------------------------TNGFSIGIG 593

Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
           DTI D  T   +   I +A   V ++I+      ++  PG T ++TFEN +N  LN AR+
Sbjct: 594 DTITDASTMDSVSKIISEAHRIVDQIIKDCIEDKMKGLPGMTYKETFENNINFELNKARE 653

Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
             G S +  L + NN++ MVV+GSKGS IN+SQ+ A VGQQNVEGKRIPFGFR RTLPHF
Sbjct: 654 NAGKSVQAQLKDCNNVRKMVVSGSKGSYINVSQMTAAVGQQNVEGKRIPFGFRDRTLPHF 713

Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
            KDDY P SRGFVENSYL+GLTP EF+FHAMGGREGLIDTAVKTAETGYIQRRL+KA+E 
Sbjct: 714 TKDDYTPHSRGFVENSYLSGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRRLVKALED 773

Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPT 491
           VMVHYD TVRNS+G +I+  YG DG     +E+Q++ +V  S  +FE  Y+ D  +   +
Sbjct: 774 VMVHYDGTVRNSLGAIIEFAYGHDGADASLLENQKVASVRCSDARFEKMYKVDVMDPAKS 833

Query: 492 LRNVS 496
            R+ S
Sbjct: 834 FRSDS 838



 Score =  150 bits (379), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 81/102 (79%)

Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
            +Q+ A VGQQNVEGKRIPFGFR RTLPHF KDDY P SRGFVENSYL+GLTP EF+FHAM
Sbjct: 685  SQMTAAVGQQNVEGKRIPFGFRDRTLPHFTKDDYTPHSRGFVENSYLSGLTPQEFYFHAM 744

Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
            GGREGLIDTAVKTAET  +   L +   +  ++YD   +N++
Sbjct: 745  GGREGLIDTAVKTAETGYIQRRLVKALEDVMVHYDGTVRNSL 786



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 34/166 (20%)

Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
           GYIQRRL+KA+E VMVHYD TVRNS+G +I+  YG DG     +E+Q++ +V  S  +FE
Sbjct: 761 GYIQRRLVKALEDVMVHYDGTVRNSLGAIIEFAYGHDGADASLLENQKVASVRCSDARFE 820

Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
             Y+                         DV+   +    D   +  L+ I   D ++++
Sbjct: 821 KMYKV------------------------DVMDPAKSFRSDSLDFSILKTIEANDGVQQV 856

Query: 712 MGSGDVISELEKEWEKLCEDREALREIFS-SGESNVVLPCNLMEVI 756
                    L+ E++ L  DR+ ++   S +GE    LP NL  +I
Sbjct: 857 ---------LDAEYQTLLTDRKLMQTFISPNGEDTFPLPVNLARMI 893



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query: 953  VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQ 1007
            V G D LS +A  NA +L +  +RSTL +K V E + L S AF+W+VGEIE RF+
Sbjct: 929  VRGSDPLSIEAQNNAVMLLKIHLRSTLSSKRVIEEFHLDSNAFDWVVGEIETRFK 983



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 34/41 (82%)

Query: 35  LGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQM 75
           +GM+P++ARP+W++++V+PVPP+ VRP++ M  +  +++ +
Sbjct: 143 IGMNPEYARPEWLIISVMPVPPMCVRPSIQMDATRHSEDDL 183



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 31/43 (72%)

Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
            V  + + P+QI++PQ NRP+MGIVQDTL A+   TKRD  + +
Sbjct: 422  VRELCMVPKQIVSPQGNRPIMGIVQDTLCAMIMFTKRDNLMKQ 464


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.137    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,677,710,954
Number of Sequences: 23463169
Number of extensions: 1258171342
Number of successful extensions: 3053341
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 12055
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 2979857
Number of HSP's gapped (non-prelim): 65211
length of query: 1791
length of database: 8,064,228,071
effective HSP length: 157
effective length of query: 1634
effective length of database: 8,675,477,834
effective search space: 14175730780756
effective search space used: 14175730780756
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 85 (37.4 bits)