BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3015
(1791 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila
melanogaster GN=RpII215 PE=3 SV=4
Length = 1887
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/504 (73%), Positives = 401/504 (79%), Gaps = 24/504 (4%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWLVGEIE RFQQAQ
Sbjct: 1015 VTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQAN 1074
Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT-----PSEFFF 1065
VG + P HF + G + ++ PS F
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1134
Query: 1066 HAMGGREGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
L A + AE NVL L +VTANTAIYYDPDPQ TVI EDQEFVN
Sbjct: 1135 --------LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 1186
Query: 1120 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+K
Sbjct: 1187 VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1246
Query: 1180 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1239
LVLRIRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT
Sbjct: 1247 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1306
Query: 1240 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1299
DSKKRI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAV
Sbjct: 1307 DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1366
Query: 1300 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1359
RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1367 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1426
Query: 1360 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1417
TVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L M
Sbjct: 1427 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSM 1486
Query: 1418 MGGPAGMFFGSAATPSSIPGPPAW 1441
+GG A MF G +TPS P W
Sbjct: 1487 LGG-AAMFIGGGSTPSMTPPMTPW 1509
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/418 (78%), Positives = 353/418 (84%), Gaps = 46/418 (11%)
Query: 72 QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
+EQ+MN+LMFLP WD KMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 REQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDEG 608
Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
PY+WISPGDTKV+VEHG L+MGILCKKSLGTS+GSLLHICFLELGH++ GRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 668
Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
NNWLL EG HSIGIG
Sbjct: 669 NNWLLFEG----------------------------------------------HSIGIG 682
Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
DTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNRILNDARD
Sbjct: 683 DTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARD 742
Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
KTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFRKRTLPHF
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802
Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
IKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862
Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
VMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD SNER
Sbjct: 863 VMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNER 920
Score = 289 bits (740), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 146/190 (76%), Positives = 158/190 (83%), Gaps = 8/190 (4%)
Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
+C+I VL +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413
Query: 830 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1414 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1473
Query: 890 DGIEIP--LATGMMGGPAGMFFGSAATPSSMSPQMTPWAQ-STPAYNALMSPGAAMTPGG 946
GIEIP L M+GG A MF G +TP SM+P MTPWA +TP Y + +AMTPGG
Sbjct: 1474 FGIEIPNTLGNSMLGG-AAMFIGGGSTP-SMTPPMTPWANCNTPRYFSPPGHVSAMTPGG 1531
Query: 947 PGFSPSVAGE 956
P FSPS A +
Sbjct: 1532 PSFSPSAASD 1541
Score = 221 bits (562), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 109/152 (71%), Positives = 118/152 (77%), Gaps = 28/152 (18%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1217
Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
LTME I+EKIN GF G+DLNCIFNDDNA+KLVL
Sbjct: 1218 LTMEQIAEKINVGF----------------------------GEDLNCIFNDDNADKLVL 1249
Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
RIRIMN++++K QDE++AVDKMEDDMFLRCIE
Sbjct: 1250 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE 1281
Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/170 (50%), Positives = 111/170 (65%), Gaps = 35/170 (20%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFE 909
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
+++FD SNER ++++F +DV++E+ S + I ELE
Sbjct: 910 KRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELE------------------------ 945
Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
EW++L DR++LR+IF +GES VVLPCNL +I+ +Q+
Sbjct: 946 -----------AEWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQK 984
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/102 (76%), Positives = 87/102 (85%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774 SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
GGREGLIDTAVKTAET + L + + + YD +N+V
Sbjct: 834 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/77 (97%), Positives = 75/77 (97%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1369 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428
Query: 576 DVLMDAAAHAEADPMRG 592
DVLMDAAAHAE DPMRG
Sbjct: 1429 DVLMDAAAHAETDPMRG 1445
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 44/50 (88%)
Query: 30 EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
EE ILGMDPK+ARPDWM+VTVLPVPPL+VRPAVVM G+A+NQ+ + + L
Sbjct: 223 EECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 272
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 507 VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus GN=Polr2a
PE=1 SV=3
Length = 1970
Score = 628 bits (1619), Expect = e-178, Method: Compositional matrix adjust.
Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
V G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082
Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
+++ + Q+ V K + G + L I P+
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135
Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
TPS F L+ + + AE ++ L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179
Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
+PQ+TV+ EDQE+VNVYYEMPDFD RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239
Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299
Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359
Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
NDI EIF VLGIEAVRK++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419
Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479
Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
CK G+EIP +G GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509
Score = 611 bits (1576), Expect = e-173, Method: Compositional matrix adjust.
Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)
Query: 74 QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
++MN+LMFL WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618
Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
+ ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++ FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678
Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
WLL+EG H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692
Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
IAD +TY +IQ IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752
Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812
Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872
Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+ S+K FE K+RFD +NER R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932
Query: 494 NV 495
+
Sbjct: 933 TL 934
Score = 251 bits (640), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 148/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)
Query: 664 LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
L IFN+D VLR +M S + + E+E+VD R ++L ++ G
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300
Query: 718 ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
I ++ K + L + D + I GE +L + + ++ +L + +
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360
Query: 769 NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
++ + ++ + +VRK++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420
Query: 829 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480
Query: 889 KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
K G+EIP +G GP GMFFGSA +P +SP MTPW Q +TPAY A S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540
Query: 944 PGGPGFSPSVAGE 956
PG GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553
Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225
Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
LTME I+EKINAGFG DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257
Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 88/111 (79%)
Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
G ++ +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773 GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832
Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
P+EFFFHAMGGREGLIDTAVKTAET + L + + + YD +N++
Sbjct: 833 PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+ S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
K+RFD +NER LRR ED++++++ + + +ELE
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953
Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
+E+E++ EDRE LR IF +G+S VVLPCNL+ +I+ Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 68/77 (88%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436
Query: 576 DVLMDAAAHAEADPMRG 592
DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 44/50 (88%)
Query: 30 EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
EE +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515 IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens GN=POLR2A
PE=1 SV=2
Length = 1970
Score = 628 bits (1619), Expect = e-178, Method: Compositional matrix adjust.
Identities = 318/510 (62%), Positives = 381/510 (74%), Gaps = 53/510 (10%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
V G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAH 1082
Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 1050
+++ + Q+ V K + G + L I P+
Sbjct: 1083 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR--LKELINISKKPK----- 1135
Query: 1051 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLV------FLFQVTANTAIYYDP 1104
TPS F L+ + + AE ++ L +VTANTAIYYDP
Sbjct: 1136 --------TPSLTVF--------LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179
Query: 1105 DPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
+PQ+TV+ EDQE+VNVYYEMPDFD RISPWLLR+ELDRK MTD+KLTME I+EKINAGF
Sbjct: 1180 NPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGF 1239
Query: 1165 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
GDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQ 1299
Query: 1225 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1284
GIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT S
Sbjct: 1300 GIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTS 1359
Query: 1285 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1344
NDI EIF VLGIEAVRK++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+
Sbjct: 1360 NDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV 1419
Query: 1345 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEK
Sbjct: 1420 NRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEK 1479
Query: 1405 CKDGIEIPLATGMMG--GPAGMFFGSAATP 1432
CK G+EIP +G GP GMFFGSA +P
Sbjct: 1480 CKYGMEIPTNIPGLGAAGPTGMFFGSAPSP 1509
Score = 611 bits (1576), Expect = e-173, Method: Compositional matrix adjust.
Identities = 294/422 (69%), Positives = 338/422 (80%), Gaps = 46/422 (10%)
Query: 74 QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
++MN+LMFL WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618
Query: 134 QWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNN 193
+ ISPGDTKVVVE+G L+MGILCKKSLGTS+GSL+HI +LE+GH++ FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678
Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
WLL+EG H+IGIGD+
Sbjct: 679 WLLIEG----------------------------------------------HTIGIGDS 692
Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
IAD +TY +IQ IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFENQVNRILNDARDKT
Sbjct: 693 IADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKT 752
Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
G SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK
Sbjct: 753 GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK 812
Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
DDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVM
Sbjct: 813 DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVM 872
Query: 434 VHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
V YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+ S+K FE K+RFD +NER R
Sbjct: 873 VKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRR 932
Query: 494 NV 495
+
Sbjct: 933 TL 934
Score = 251 bits (640), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 148/313 (47%), Positives = 198/313 (63%), Gaps = 22/313 (7%)
Query: 664 LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
L IFN+D VLR +M S + + E+E+VD R ++L ++ G
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300
Query: 718 ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
I ++ K + L + D + I GE +L + + ++ +L + +
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360
Query: 769 NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
++ + ++ + +VRK++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420
Query: 829 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480
Query: 889 KDGIEIPLATGMMG--GPAGMFFGSAATP-SSMSPQMTPWAQ-STPAYNALM-SPGAAMT 943
K G+EIP +G GP GMFFGSA +P +SP MTPW Q +TPAY A S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540
Query: 944 PGGPGFSPSVAGE 956
PG GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553
Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/152 (68%), Positives = 117/152 (76%), Gaps = 28/152 (18%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225
Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
LTME I+EKINAGFG DDLNCIFNDDNAEKLVL
Sbjct: 1226 LTMEQIAEKINAGFG----------------------------DDLNCIFNDDNAEKLVL 1257
Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
RIRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE
Sbjct: 1258 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE 1289
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 88/111 (79%)
Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
G ++ +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLT
Sbjct: 773 GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT 832
Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
P+EFFFHAMGGREGLIDTAVKTAET + L + + + YD +N++
Sbjct: 833 PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 883
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 35/170 (20%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+ S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
K+RFD +NER LRR ED++++++ + + +ELE
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELE------------------------ 953
Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
+E+E++ EDRE LR IF +G+S VVLPCNL+ +I+ Q+
Sbjct: 954 -----------REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 68/77 (88%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436
Query: 576 DVLMDAAAHAEADPMRG 592
DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 44/50 (88%)
Query: 30 EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
EE +LGM+P++ARP+WM+VTVLPVPPLSVRPAVVM GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515 IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
briggsae GN=rpb-1 PE=3 SV=2
Length = 1853
Score = 589 bits (1519), Expect = e-167, Method: Compositional matrix adjust.
Identities = 284/422 (67%), Positives = 331/422 (78%), Gaps = 46/422 (10%)
Query: 75 MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
MM++LM+LP WDGK+PQP ILKPKPLWTGKQVFSLIIPGNVN+ RTHSTHPD EDSGPY+
Sbjct: 554 MMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYK 613
Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
WISPGDTKV++EHG LL GI+C K++G S+G+LLH+ LELGHE+ FY +IQTV+N W
Sbjct: 614 WISPGDTKVLIEHGELLSGIVCSKTVGKSAGNLLHVVALELGHEIAANFYSHIQTVINAW 673
Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
LL EG H+IGIGDTI
Sbjct: 674 LLREG----------------------------------------------HTIGIGDTI 687
Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
AD TYL+IQ I+KAK+DV++VI+KAHN DLEPTPGNTLRQTFEN+VN+ILNDARD+TG
Sbjct: 688 ADQSTYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTG 747
Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
SA+KSL+E+NN K+MVV+GSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHFIKD
Sbjct: 748 SSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKD 807
Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
DYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV
Sbjct: 808 DYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 867
Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLRN 494
+YD TVRNS+ Q++QLRYGEDGL G VE+Q + T+ ++ FE +R D ++ + +N
Sbjct: 868 NYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKN 927
Query: 495 VS 496
S
Sbjct: 928 YS 929
Score = 565 bits (1455), Expect = e-159, Method: Compositional matrix adjust.
Identities = 294/499 (58%), Positives = 354/499 (70%), Gaps = 16/499 (3%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
V+G D++SKQA NATLL L+RSTLCTK + + +L++EAF+WL+GEIE RFQQA Q
Sbjct: 1017 VSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQ 1076
Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL-----TPSEFFF 1065
VG + P H+ + G + + TPS F
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVF 1136
Query: 1066 ---HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
A E D K T L +VT NTAIYYDPDP+NTVI ED+E+V+++Y
Sbjct: 1137 LTGAAAKDPEKAKDVLCKLEHTT-----LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFY 1191
Query: 1123 EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1182
EMPD D TR SPWLLRIELDRKRM DKKLTME I+++I+ GFG D++ I+ DDNAEKLV
Sbjct: 1192 EMPDHDLTRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGQDVHTIYTDDNAEKLVF 1251
Query: 1183 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1242
R+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD K
Sbjct: 1252 RLRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDK 1310
Query: 1243 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1302
KRIIIT G FKA+ADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRKS
Sbjct: 1311 KRIIITPEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKS 1370
Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1362
+EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD
Sbjct: 1371 IEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVD 1430
Query: 1363 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPA 1422
+LM+A+ HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK G+EIP M G
Sbjct: 1431 ILMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKHGMEIPQNVVMGAGIY 1490
Query: 1423 GMFFGSAATPSSIPGPPAW 1441
G F + + P W
Sbjct: 1491 GGGFAGSPSREFSPAHSPW 1509
Score = 228 bits (581), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 116/189 (61%), Positives = 139/189 (73%), Gaps = 16/189 (8%)
Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
+C+I VL +VRKS+EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1355 ICEIFEVLGIEAVRKSIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 1414
Query: 830 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
Q+ GALMRCSFEETVD+LM+A+ HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK
Sbjct: 1415 QEVGALMRCSFEETVDILMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCK 1474
Query: 890 DGIEIP----LATGMMGGPAGMFFGSAATPS-SMSPQMTPWAQS-TPAYNALMSPGAAMT 943
G+EIP + G+ GG G A +PS SP +PW TP Y+ SP M+
Sbjct: 1475 HGMEIPQNVVMGAGIYGG------GFAGSPSREFSPAHSPWNSGVTPNYSGPWSPTGGMS 1528
Query: 944 PGGPGFSPS 952
P GFSP+
Sbjct: 1529 PSA-GFSPA 1536
Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 104/152 (68%), Gaps = 29/152 (19%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D TR SPWLLRIELDRKRM DKK
Sbjct: 1160 LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLTRTSPWLLRIELDRKRMVDKK 1219
Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
LTME I+++I+ GFG D++T I+ DDNAEKLV
Sbjct: 1220 LTMEMIADRIHGGFGQDVHT----------------------------IYTDDNAEKLVF 1251
Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
R+RI +D + +E+ VDKMEDD+FLRCIE
Sbjct: 1252 RLRIA-GEDKGAEGQEEQVDKMEDDVFLRCIE 1282
Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 89/111 (80%)
Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
G ++ +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLT
Sbjct: 767 GSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLT 826
Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
PSEFFFHAMGGREGLIDTAVKTAET + L + + + YD +N++
Sbjct: 827 PSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSL 877
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 61/77 (79%), Positives = 70/77 (90%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
S+EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETV
Sbjct: 1370 SIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETV 1429
Query: 576 DVLMDAAAHAEADPMRG 592
D+LM+A+ HAE DP++G
Sbjct: 1430 DILMEASVHAEVDPVKG 1446
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 100/170 (58%), Gaps = 35/170 (20%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G VE+Q + T+ ++ FE
Sbjct: 852 GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 911
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
+R D ++ + LR+ ++EDV+RE+ + D IS +E
Sbjct: 912 RDFRMDLTDNKFLRKNYSEDVVREIQEAQDGISLVE------------------------ 947
Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
EW +L EDR LR+IF G++ +VLPCNL +I+ Q+
Sbjct: 948 -----------SEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQK 986
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 43/50 (86%)
Query: 30 EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
E+ +++GMDP+FARP+WM+ TVLPVPPL+VRPAVV GSA+NQ+ + + L
Sbjct: 225 EDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKL 274
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 36/42 (85%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 1530
+E I + PRQ+ITPQ N+PVMGIVQDTL AVR MTKRD+F+D
Sbjct: 509 IEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDIFID 550
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
elegans GN=ama-1 PE=1 SV=3
Length = 1856
Score = 587 bits (1514), Expect = e-166, Method: Compositional matrix adjust.
Identities = 282/422 (66%), Positives = 331/422 (78%), Gaps = 46/422 (10%)
Query: 75 MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
MM++LM+LP WDGK+PQP ILKPKPLWTGKQVFSLIIPGNVN+ RTHSTHPD EDSGPY+
Sbjct: 554 MMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYK 613
Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
WISPGDTKV++EHG LL GI+C K++G S+G+LLH+ LELG+E+ FY +IQTV+N W
Sbjct: 614 WISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAW 673
Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
L+ EG H+IGIGDTI
Sbjct: 674 LIREG----------------------------------------------HTIGIGDTI 687
Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
AD TYL+IQ I+KAK+DV++VI+KAHN DLEPTPGNTLRQTFEN+VN+ILNDARD+TG
Sbjct: 688 ADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTG 747
Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
SA+KSL+E+NN K+MVV+GSKGS INISQVIACVGQQNVEGKRIPFGFR RTLPHFIKD
Sbjct: 748 SSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKD 807
Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
DYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV
Sbjct: 808 DYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 867
Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLRN 494
+YD TVRNS+ Q++QLRYGEDGL G VE+Q + T+ ++ FE +R D ++ + +N
Sbjct: 868 NYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKN 927
Query: 495 VS 496
S
Sbjct: 928 YS 929
Score = 570 bits (1469), Expect = e-161, Method: Compositional matrix adjust.
Identities = 297/499 (59%), Positives = 357/499 (71%), Gaps = 17/499 (3%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
V+G D++SKQA NATLL L+RSTLCTK + +L+SEAF+WL+GEIE+RFQQA Q
Sbjct: 1017 VSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQ 1076
Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF-----VENSYLAGLTPSEFFF 1065
VG + P H+ + G + N TPS F
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVF 1136
Query: 1066 ---HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
A E D K T L +VT NTAIYYDPDP+NTVI ED+E+V+++Y
Sbjct: 1137 LTGAAAKDPEKAKDVLCKLEHTT-----LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFY 1191
Query: 1123 EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1182
EMPD D +R SPWLLRIELDRKRM DKKLTME I+++I+ GFG+D++ I+ DDNAEKLV
Sbjct: 1192 EMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVF 1251
Query: 1183 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1242
R+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD K
Sbjct: 1252 RLRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDK 1309
Query: 1243 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1302
KRIIIT G FK++ADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK+
Sbjct: 1310 KRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKA 1369
Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1362
+E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD
Sbjct: 1370 IEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVD 1429
Query: 1363 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPA 1422
+LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK G+EIP M GG
Sbjct: 1430 ILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFY 1489
Query: 1423 GMFFGSAATPSSIPGPPAW 1441
G F GS + P W
Sbjct: 1490 GSFAGSPSNREFSPAHSPW 1508
Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/186 (62%), Positives = 138/186 (74%), Gaps = 8/186 (4%)
Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
+C+I VL +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413
Query: 830 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
Q+ GALMRCSFEETVD+LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK
Sbjct: 1414 QEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCK 1473
Query: 890 DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS-TPAY-NALMSP-GAAMTPGG 946
G+EIP M GG G F GS + SP +PW TP Y A SP M+PG
Sbjct: 1474 YGMEIPQNVVMGGGFYGSFAGSPSN-REFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA 1532
Query: 947 PGFSPS 952
GFSP+
Sbjct: 1533 -GFSPA 1537
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 105/152 (69%), Gaps = 30/152 (19%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKK
Sbjct: 1160 LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKK 1219
Query: 1589 LTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVL 1648
LTME I+++I+ GFG+D++T I+ DDNAEKLV
Sbjct: 1220 LTMEMIADRIHGGFGNDVHT----------------------------IYTDDNAEKLVF 1251
Query: 1649 RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
R+RI D + Q+E+ VDKMEDD+FLRCIE
Sbjct: 1252 RLRIAGEDKGEAQEEQ--VDKMEDDVFLRCIE 1281
Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 89/111 (80%)
Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
G ++ +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLT
Sbjct: 767 GSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLT 826
Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
PSEFFFHAMGGREGLIDTAVKTAET + L + + + YD +N++
Sbjct: 827 PSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSL 877
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/77 (77%), Positives = 70/77 (90%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETV
Sbjct: 1369 AIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETV 1428
Query: 576 DVLMDAAAHAEADPMRG 592
D+LM+AA HAE DP++G
Sbjct: 1429 DILMEAAVHAEEDPVKG 1445
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 100/170 (58%), Gaps = 35/170 (20%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G VE+Q + T+ ++ FE
Sbjct: 852 GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 911
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
+R D ++ + LR+ ++EDV+RE+ S D IS +E
Sbjct: 912 RDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVE------------------------ 947
Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
EW +L EDR LR+IF G++ +VLPCNL +I+ Q+
Sbjct: 948 -----------SEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQK 986
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 43/50 (86%)
Query: 30 EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
E+ +++GMDP+FARP+WM+ TVLPVPPL+VRPAVV GSA+NQ+ + + L
Sbjct: 225 EDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKL 274
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 36/42 (85%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 1530
+E I + PRQ+ITPQ N+PVMGIVQDTL AVR MTKRDVF+D
Sbjct: 509 IEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550
>sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium
discoideum GN=polr2a PE=2 SV=2
Length = 1727
Score = 446 bits (1148), Expect = e-124, Method: Compositional matrix adjust.
Identities = 231/411 (56%), Positives = 278/411 (67%), Gaps = 51/411 (12%)
Query: 72 QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
++ +MNILM+LP WDGK+P P ILKPK LWTGKQ+FSLIIP ++N+ R STH D E +
Sbjct: 548 KDLVMNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLIIP-DINLIRFTSTHNDKEPNE 606
Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
S GDT+V++E G LL GILCK+SLG ++GS++H+ E GH+ C F QTVV
Sbjct: 607 ----CSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVV 662
Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
N+WL+ G ++GIGDTIAD T ++ + I AK V E+I KA N E PG S
Sbjct: 663 NHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNKQFECQPGKS---- 718
Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
VIE TFE +VN++LN ARD
Sbjct: 719 ----------------------VIE--------------------TFEQKVNQVLNKARD 736
Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
G SA+ SL+E NNLKAMV AGSKGS INISQ++ACVGQQNVEGKRIPFGF+ RTLPHF
Sbjct: 737 TAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQMMACVGQQNVEGKRIPFGFQSRTLPHF 796
Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME
Sbjct: 797 TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 856
Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYR 482
V + YD TVRNS+G +IQ YGEDG+ G VE+Q ID++ + + E YR
Sbjct: 857 VSIKYDATVRNSLGDVIQFAYGEDGIDGCFVENQSIDSLRKDNTELERMYR 907
Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust.
Identities = 233/496 (46%), Positives = 312/496 (62%), Gaps = 37/496 (7%)
Query: 966 NATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA-----QVIACVGQQNV 1020
NAT+LF LVRST +K V +RL+ +AF W+ GEIE++F QA +++ + Q++
Sbjct: 1032 NATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIESKFLQALAHPGEMVGALAAQSI 1091
Query: 1021 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL-----TPS-EFFFHAMGGREGL 1074
G+ P H+ + G + + TPS + R+
Sbjct: 1092 -GE--PATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQVKTPSLTIYLKPHMARD-- 1146
Query: 1075 IDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRI 1132
+D A K ++ L VT+ T IYYDPDPQNT+I ED EFVN Y+E+PD D +
Sbjct: 1147 MDRA-KIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAEFVNSYFELPDEEIDVHSM 1205
Query: 1133 SPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDS 1192
SPWLLRIELDR +TDKKLTM I++ + FG LNCIF+DDNAEKL+LRIR++ S ++
Sbjct: 1206 SPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSDDNAEKLILRIRMVESQET 1265
Query: 1193 KMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGE 1252
K D +D DD FLR IE+NMLS+M L+GI+ I KV+M +TD K + TE+G
Sbjct: 1266 KGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFM---RTDDKIPKV-TENGG 1315
Query: 1253 FKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQ 1312
F +W+L+TDG SL++V+S DVD RT SNDI EI QVLGIEAVR ++ KE+ V+
Sbjct: 1316 FGVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNALLKELRAVIS 1375
Query: 1313 FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE 1372
F G YVNYRHLA+L DVMT +GHLMAITRHGINR +TG LMRCSFEETV++LMDAA +E
Sbjct: 1376 FDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEILMDAAMFSE 1435
Query: 1373 ADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGMFF---GSA 1429
D ++GV+ENII+GQLP +GTG F++ L+ + K+ I L P+ + + +
Sbjct: 1436 TDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPE-----PSNVSYPDTPGS 1490
Query: 1430 ATPSSIPGPPAWYPIH 1445
TPS G + P H
Sbjct: 1491 QTPSYSYGDGSTTPFH 1506
Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 119/183 (65%), Gaps = 9/183 (4%)
Query: 773 LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
+ +++ + +VR ++ KE+ V+ F G YVNYRHLA+L DVMT +GHLMAITRHGINR +T
Sbjct: 1353 IIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVET 1412
Query: 833 GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
G LMRCSFEETV++LMDAA +E D ++GV+ENII+GQLP +GTG F++ L+ + K+
Sbjct: 1413 GPLMRCSFEETVEILMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAH 1472
Query: 893 EIPLATGMMGGPAGMFFGSAATPSSMSPQMTPW-AQSTPAYNALMSPGAAMTPGGPG-FS 950
I L P+ + + TP S +P + +TP +N +P + G FS
Sbjct: 1473 SIALPE-----PSNVSYPD--TPGSQTPSYSYGDGSTTPFHNPYDAPLSPFNETFRGDFS 1525
Query: 951 PSV 953
PS
Sbjct: 1526 PSA 1528
Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 72/102 (70%), Positives = 84/102 (82%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q++ACVGQQNVEGKRIPFGF+ RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 768 SQMMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 827
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
GGREGLIDTAVKT+ET + L + + +I YD +N++
Sbjct: 828 GGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSL 869
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 92/154 (59%), Gaps = 36/154 (23%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTD 1586
L VT+ T IYYDPDPQNT+I ED EFVN Y+E+PD D +SPWLLRIELDR +TD
Sbjct: 1162 LANVTSATEIYYDPDPQNTIISEDAEFVNSYFELPDEEIDVHSMSPWLLRIELDRGMVTD 1221
Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
KKLTM I++ + FG LS LNCIF+DDNAEKL
Sbjct: 1222 KKLTMADITQCVVRDFG------LS----------------------LNCIFSDDNAEKL 1253
Query: 1647 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
+LRIR++ S ++K D +D DD FLR IE
Sbjct: 1254 ILRIRMVESQETKGTDNDD------DDQFLRRIE 1281
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 62/77 (80%)
Query: 519 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
KE+ V+ F G YVNYRHLA+L DVMT +GHLMAITRHGINR +TG LMRCSFEETV++L
Sbjct: 1368 KELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEIL 1427
Query: 579 MDAAAHAEADPMRGYIQ 595
MDAA +E D ++G +
Sbjct: 1428 MDAAMFSETDDVKGVTE 1444
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 99/198 (50%), Gaps = 36/198 (18%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRL+KAME V + YD TVRNS+G +IQ YGEDG+ G VE+Q ID++
Sbjct: 844 GYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFVENQSIDSLR------- 896
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
+ +L R++ V + G G ++ +++H + N+ + R+
Sbjct: 897 -------KDNTELERMYRHQVDKPDYGDG----WMDPLVIEH--------VRNDSLTRDT 937
Query: 712 MGSGDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVIFILQRWKLWGNENL 770
LEKE+E++ DR LR EI SGE+N LP NL +I Q+ +
Sbjct: 938 ---------LEKEFERIKSDRSLLRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRV 988
Query: 771 RFLCKIIFVLSVRKSVEK 788
L + VL + K V +
Sbjct: 989 SDLNPAVVVLEIEKLVAR 1006
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1492 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
I + PRQI++PQ+NRPVMGIVQDTL R TKRD F++K
Sbjct: 509 IMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEK 548
>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana
GN=RPB205 PE=1 SV=3
Length = 1839
Score = 444 bits (1141), Expect = e-123, Method: Compositional matrix adjust.
Identities = 231/445 (51%), Positives = 288/445 (64%), Gaps = 61/445 (13%)
Query: 72 QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
++ MN LM+ +DGK+P P ILKP+PLWTGKQVF+LIIP +N+ R + H D E
Sbjct: 557 KDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAWHADTETG- 615
Query: 132 PYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVV 191
+I+PGDT+V +E G LL G LCKK+LGTS+GSL+H+ + E+G + +F G+ Q +V
Sbjct: 616 ---FITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLV 672
Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG 251
N WLL G + IGIG
Sbjct: 673 NYWLLQNGFT----------------------------------------------IGIG 686
Query: 252 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARD 311
DTIAD T +I I AK V ++I++ +L+P PG T+R TFEN+VN++LN ARD
Sbjct: 687 DTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFENRVNQVLNKARD 746
Query: 312 KTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 371
G SA+KSL E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF RTLPHF
Sbjct: 747 DAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHF 806
Query: 372 IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 431
KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME
Sbjct: 807 TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 866
Query: 432 VMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFED--KYRFDPSNER 489
+MV YD TVRNS+G +IQ YGEDG+ +E Q++D++ + +F+ KY D N
Sbjct: 867 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDENWN 926
Query: 490 PT---------LRNVSSLRRVVNSK 505
PT L+ + LR V +++
Sbjct: 927 PTYLSDEHLEDLKGIRELRDVFDAE 951
Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust.
Identities = 248/514 (48%), Positives = 320/514 (62%), Gaps = 59/514 (11%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--- 1009
V G+D LS +A +NATL F L+RSTL +K V E Y+LS EAFEW++GEIE+RF Q+
Sbjct: 1020 VPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVA 1079
Query: 1010 --QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGF 1049
++I CV Q+ V K + G R R + + K P
Sbjct: 1080 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP----- 1134
Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
S LTP A +EG KT + L VT T ++YDPDP +T
Sbjct: 1135 ---SLSVYLTP-----EASKSKEG-----AKTVQCALEYTTLRSVTQATEVWYDPDPMST 1181
Query: 1110 VIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
+I ED EFV YYEMPD D P +ISPWLLRIEL+R+ M DKKL+M I+EKIN F DD
Sbjct: 1182 IIEEDFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDD 1241
Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQG 1225
L CIFNDDNA+KL+LRIRIMN + K +QDE EDD+FL+ IE+NML++M L+G
Sbjct: 1242 LTCIFNDDNAQKLILRIRIMNDEGPKGELQDE-----SAEDDVFLKKIESNMLTEMALRG 1296
Query: 1226 IEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSN 1285
I I KV++ ++ E G FK +W+L+T+G +L+ V+ DVDP RT SN
Sbjct: 1297 IPDINKVFIK-----QVRKSRFDEEGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSN 1351
Query: 1286 DICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1345
+ EI +VLGIEAVR+++ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGIN
Sbjct: 1352 HLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1411
Query: 1346 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 1405
R DTG LMRCSFEETVD+L+DAAA+AE D +RGV+ENI++GQL +GTG +L L+ E
Sbjct: 1412 RNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEML 1471
Query: 1406 KDGIEIPLATGMMGGPAGMFFGSAATPSSIPGPP 1439
K+ IE+ L + M G+ FG S + G P
Sbjct: 1472 KNAIELQLPSYM----DGLEFGMTPARSPVSGTP 1501
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/187 (51%), Positives = 125/187 (66%), Gaps = 10/187 (5%)
Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
L +II VL +VR+++ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR
Sbjct: 1353 LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1412
Query: 830 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
DTG LMRCSFEETVD+L+DAAA+AE D +RGV+ENI++GQL +GTG +L L+ E K
Sbjct: 1413 NDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLK 1472
Query: 890 DGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTP-GGPG 948
+ IE+ L + M G GM TP+ TP+ + + N L+SP ++P
Sbjct: 1473 NAIELQLPSYMDGLEFGM------TPARSPVSGTPYHEGMMSPNYLLSPNMRLSPMSDAQ 1526
Query: 949 FSPSVAG 955
FSP V G
Sbjct: 1527 FSPYVGG 1533
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/102 (69%), Positives = 81/102 (79%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+ ACVGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 778 SQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 837
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
GGREGLIDTAVKT+ET + L + + + YD +N++
Sbjct: 838 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 879
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 93/156 (59%), Gaps = 37/156 (23%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTD 1586
L VT T ++YDPDP +T+I ED EFV YYEMPD D P +ISPWLLRIEL+R+ M D
Sbjct: 1163 LRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVD 1222
Query: 1587 KKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
KKL+ M I+EKIN F DDL CIFNDDNA+KL
Sbjct: 1223 KKLS----------------------------MADIAEKINLEFDDDLTCIFNDDNAQKL 1254
Query: 1647 VLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIE 1680
+LRIRIMN + K +QDE EDD+FL+ IE
Sbjct: 1255 ILRIRIMNDEGPKGELQDE-----SAEDDVFLKKIE 1285
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 67/86 (77%)
Query: 520 EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 579
E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETVD+L+
Sbjct: 1372 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILL 1431
Query: 580 DAAAHAEADPMRGYIQRRLIKAMESV 605
DAAA+AE D +RG + ++ + +
Sbjct: 1432 DAAAYAETDCLRGVTENIMLGQLAPI 1457
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 36/171 (21%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRL+KAME +MV YD TVRNS+G +IQ YGEDG+ +E Q++D++ + +F+
Sbjct: 854 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFD 913
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
++++ +E +++ L +L G ++LR +F
Sbjct: 914 RTFKYEIDDENWNPTYLSDEHLEDLKG-----------------IRELRDVF-------- 948
Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVIFILQR 761
+ E+ KL DR L EI ++G+S LP N+ I+ Q+
Sbjct: 949 ----------DAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQK 989
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-VTANTAIYYD 1541
V + + P+ I++PQ NRPVMGIVQDTL RK+TKRD F++K V NT ++++
Sbjct: 515 VLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWE 568
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 38/49 (77%)
Query: 34 ILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFL 82
+LG +PKFARPDWM++ VLP+PP VRP+V+M ++R+++ + + L +
Sbjct: 232 LLGFNPKFARPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMI 280
>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb1 PE=1 SV=1
Length = 1752
Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/415 (53%), Positives = 271/415 (65%), Gaps = 55/415 (13%)
Query: 75 MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
+MNI++++P WDG +P P ILKPK LWTGKQ+ SLIIP +N+ R DD+ S
Sbjct: 552 VMNIMLWVPDWDGILPPPVILKPKVLWTGKQILSLIIPKGINLIRD-----DDKQS---- 602
Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
+P D+ +++E+G ++ G++ KK++G S G L+H + E G E+C F+ IQ VVN W
Sbjct: 603 LSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNYW 662
Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
LL HN G SIGIGDTI
Sbjct: 663 LL---------------------------------------HN-------GFSIGIGDTI 676
Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
AD T E+ +K+A+ V E IQ A + L+P PG TLR++FE +V+RILN ARD G
Sbjct: 677 ADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAKVSRILNQARDNAG 736
Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
SA+ SL + NN+K MV AGSKGS INISQ+ ACVGQQ VEGKRIPFGF+ RTLPHF KD
Sbjct: 737 RSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPHFPKD 796
Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
D PESRGF+ENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KAME VMV
Sbjct: 797 DDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMV 856
Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNER 489
YD TVRN++G +IQ YGEDGL VE+Q D++ LS K+FE KYR D +R
Sbjct: 857 RYDGTVRNAMGDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFEKKYRIDLMEDR 911
Score = 362 bits (930), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 217/494 (43%), Positives = 300/494 (60%), Gaps = 29/494 (5%)
Query: 955 GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVIAC 1014
G D++++ NATLLFQ L+RS K V YRL+ AFEW++GE+E RFQQA V
Sbjct: 1005 GSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPG 1064
Query: 1015 VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF---------VENSYLAGLTPSEFFF 1065
+ + I + TL F G S+ + N TPS
Sbjct: 1065 EMVGTLAAQSIGEPATQMTLNTF--HYAGVSSKNVTLGVPRLKEILNVAKNIKTPS-LTI 1121
Query: 1066 HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMP 1125
+ M +D A K +T L VT+ T I+YDPDPQ+TVI ED++FV ++ +P
Sbjct: 1122 YLMPWIAANMDLA-KNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIP 1180
Query: 1126 DFDPT----RISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLV 1181
D + + SPWLLR+ELDR +M DKKL+M ++ KI F DL I+++DNA+KL+
Sbjct: 1181 DEEVEENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKIAESFERDLFTIWSEDNADKLI 1240
Query: 1182 LRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1241
+R RI+ DD K +D+++ + E+D+FL+ IE +ML ++L+G+ I +VYM
Sbjct: 1241 IRCRIIRDDDRKAEDDDNMI---EEDVFLKTIEGHMLESISLRGVPNITRVYMM-----E 1292
Query: 1242 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1301
K + E G F+ +W+LETDG +L + ++ VD RT+SN EI Q+LGIEA R
Sbjct: 1293 HKIVRQIEDGTFERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRS 1352
Query: 1302 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1361
++ KE+ V++F G YVNYRHLALLCDVMT++GHLMAITRHGINR +TGALMRCSFEETV
Sbjct: 1353 ALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETV 1412
Query: 1362 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD---GIEIPLATGMM 1418
++LMDAAA E D +G+SENI++GQL MGTG FD+ LD + + G +P G
Sbjct: 1413 EILMDAAASGEKDDCKGISENIMLGQLAPMGTGAFDIYLDQDMLMNYSLGTAVPTLAGSG 1472
Query: 1419 GGPAGMFFGSAATP 1432
G + + G A TP
Sbjct: 1473 MGTSQLPEG-AGTP 1485
Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 117/186 (62%), Gaps = 18/186 (9%)
Query: 773 LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
+ +I+ + + R ++ KE+ V++F G YVNYRHLALLCDVMT++GHLMAITRHGINR +T
Sbjct: 1341 ILQILGIEATRSALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAET 1400
Query: 833 GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD-- 890
GALMRCSFEETV++LMDAAA E D +G+SENI++GQL MGTG FD+ LD + +
Sbjct: 1401 GALMRCSFEETVEILMDAAASGEKDDCKGISENIMLGQLAPMGTGAFDIYLDQDMLMNYS 1460
Query: 891 -GIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGF 949
G +P G G + + G A TP SP ++ G +P F
Sbjct: 1461 LGTAVPTLAGSGMGTSQLPEG-AGTPYERSP--------------MVDSGFVGSPDAAAF 1505
Query: 950 SPSVAG 955
SP V G
Sbjct: 1506 SPLVQG 1511
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/102 (65%), Positives = 77/102 (75%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+ ACVGQQ VEGKRIPFGF+ RTLPHF KDD PESRGF+ENSYL GLTP EFFFHAM
Sbjct: 765 SQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAM 824
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
GREGLIDTAVKTAET + L + + + YD +N +
Sbjct: 825 AGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAM 866
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/78 (70%), Positives = 67/78 (85%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
+++ KE+ V++F G YVNYRHLALLCDVMT++GHLMAITRHGINR +TGALMRCSFEET
Sbjct: 1352 SALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEET 1411
Query: 575 VDVLMDAAAHAEADPMRG 592
V++LMDAAA E D +G
Sbjct: 1412 VEILMDAAASGEKDDCKG 1429
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 35/156 (22%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPT----RISPWLLRIELDRKRM 1584
L VT+ T I+YDPDPQ+TVI ED++FV ++ +PD + + SPWLLR+ELDR +M
Sbjct: 1146 LSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEVEENLYKQSPWLLRLELDRAKM 1205
Query: 1585 TDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAE 1644
DKKL+M ++ KI F DL T I+++DNA+
Sbjct: 1206 LDKKLSMSDVAGKIAESFERDLFT----------------------------IWSEDNAD 1237
Query: 1645 KLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE 1680
KL++R RI+ DD K +D+++ + E+D+FL+ IE
Sbjct: 1238 KLIIRCRIIRDDDRKAEDDDNMI---EEDVFLKTIE 1270
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 87/166 (52%), Gaps = 40/166 (24%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRL+KAME VMV YD TVRN++G +IQ YGEDGL VE+Q D++ LS K+FE
Sbjct: 841 GYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFE 900
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
KYR D +R L ++ E+ I N+ +++L
Sbjct: 901 KKYRIDLMEDRSL-SLYMEN-----------------------------SIENDSSVQDL 930
Query: 712 MGSGDVISELEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVI 756
L++E+ +L DRE L + IF G++ LP N+ +I
Sbjct: 931 ---------LDEEYTQLVADRELLCKFIFPKGDARWPLPVNVQRII 967
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 24/132 (18%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
++ I + P+QI++PQ+N+PVMGIVQDTL VRK + RD FL + N V
Sbjct: 507 IQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTR--------------NAV 552
Query: 1549 IPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNT 1608
+ N+ +PD+D P +L+ ++ T K++ I + IN DD +
Sbjct: 553 M-------NIMLWVPDWDGILPPPVILKPKV---LWTGKQILSLIIPKGINLIRDDDKQS 602
Query: 1609 PLSPTDKKLTME 1620
+PTD + +E
Sbjct: 603 LSNPTDSGMLIE 614
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 37/45 (82%)
Query: 35 LGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
LG++ ++ARPDWM++TVLPVPP SVRP++ + G++R ++ + + L
Sbjct: 228 LGLNEQYARPDWMIITVLPVPPPSVRPSISVDGTSRGEDDLTHKL 272
>sp|Q75A34|RPB1_ASHGO DNA-directed RNA polymerase II subunit RPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB1 PE=3 SV=2
Length = 1745
Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust.
Identities = 213/412 (51%), Positives = 268/412 (65%), Gaps = 55/412 (13%)
Query: 73 EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
+Q++N+L ++P WDG +P P ILKPKPLW+GKQ+ S+ IP +++ R DE +
Sbjct: 544 DQVLNMLYWIPDWDGVIPTPTILKPKPLWSGKQLLSMAIPSGIHLQRF------DEGT-- 595
Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
++SP D +++ G ++ G++ KK++G+SSG L+H+ E G EVC + +GNIQ VVN
Sbjct: 596 -TYLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPEVCAKLFGNIQKVVN 654
Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
WLL HN G SIGIGD
Sbjct: 655 YWLL---------------------------------------HN-------GFSIGIGD 668
Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
TIAD +T EI AI AK+ V EV ++A L G TLR++FE+ V R LN+ARDK
Sbjct: 669 TIADEKTMREITDAIALAKKKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDK 728
Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
G SA+ +L + NN+K MV AGSKGS INI+Q+ ACVGQQ+VEGKRI FGF RTLPHF
Sbjct: 729 AGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFS 788
Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 789 KDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDI 848
Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
MVHYD T RNS+G +IQ YGEDG+ +E Q IDT+ S FE +YR D
Sbjct: 849 MVHYDGTTRNSLGNIIQFVYGEDGMDAAHIEKQSIDTIPGSDLAFEKRYRID 900
Score = 330 bits (845), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 190/476 (39%), Positives = 279/476 (58%), Gaps = 55/476 (11%)
Query: 955 GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA----- 1009
G+ Q+ ++A ENA LF CL+RS L T+ V YRL+ + FEW++ IE +F ++
Sbjct: 1002 GKSQILQEAQENAITLFCCLLRSRLATRRVITEYRLTKQTFEWVLNNIEAQFLRSIVHPG 1061
Query: 1010 QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGFVE 1051
+++ + Q+ V K++ G R + + + K+ P ++E
Sbjct: 1062 EMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLE 1121
Query: 1052 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVI 1111
SY ++ R + T +K+ VT + IYYDPDP +TVI
Sbjct: 1122 ESYATDQEKAKLI------RSAIEHTTLKS------------VTVASEIYYDPDPSSTVI 1163
Query: 1112 PEDQEFVNVYYEMPDFDP----TRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
ED+E + +++ + D + SPWLLR+ELDR MTDK LTM + EKI F +D
Sbjct: 1164 EEDEEIIQLHFSLMDEETEASLKHQSPWLLRLELDRVAMTDKDLTMGQVGEKIKETFKND 1223
Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIE 1227
L I+++DNAEKL++R R++ D K D E + E+D L+ IE ML +TL+G++
Sbjct: 1224 LFVIWSEDNAEKLIIRCRVVR--DPKTLDAEA---EAEEDHMLKKIENTMLESITLRGVQ 1278
Query: 1228 AIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDI 1287
I +V M R + +E+GE+ I +W+LETDG +L +V+S VDP R ++N
Sbjct: 1279 DITRVVMM-----KYDRKVPSETGEYHKIPEWVLETDGVNLSEVMSVPGVDPTRIYTNSF 1333
Query: 1288 CEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 1347
+I VLGIEA R ++ KE+ V+ G YVNYRH+ALL DVMT++G LM++TRHG NR
Sbjct: 1334 IDIMNVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRA 1393
Query: 1348 DTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1403
DTGALMRCSFEETV++L +A A AE D GVSEN+I+GQ+ +GTG FD+++D E
Sbjct: 1394 DTGALMRCSFEETVEILFEAGAAAELDDCSGVSENVILGQMAPIGTGSFDVMIDDE 1449
Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/102 (67%), Positives = 80/102 (78%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
AQ+ ACVGQQ+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 759 AQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAM 818
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
GGREGLIDTAVKTAET + L + + ++YD +N++
Sbjct: 819 GGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 860
Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%)
Query: 773 LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
+ ++ + + R ++ KE+ V+ G YVNYRH+ALL DVMT++G LM++TRHG NR DT
Sbjct: 1336 IMNVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADT 1395
Query: 833 GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 886
GALMRCSFEETV++L +A A AE D GVSEN+I+GQ+ +GTG FD+++D E
Sbjct: 1396 GALMRCSFEETVEILFEAGAAAELDDCSGVSENVILGQMAPIGTGSFDVMIDDE 1449
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%)
Query: 519 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
KE+ V+ G YVNYRH+ALL DVMT++G LM++TRHG NR DTGALMRCSFEETV++L
Sbjct: 1351 KEVYNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEIL 1410
Query: 579 MDAAAHAEADPMRGYIQRRLIKAMESV 605
+A A AE D G + ++ M +
Sbjct: 1411 FEAGAAAELDDCSGVSENVILGQMAPI 1437
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 85/165 (51%), Gaps = 35/165 (21%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRL+KA+E +MVHYD T RNS+G +IQ YGEDG+ +E Q IDT+ S FE
Sbjct: 835 GYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFVYGEDGMDAAHIEKQSIDTIPGSDLAFE 894
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
+YR D N N + L+ SG E+
Sbjct: 895 KRYRIDLLNP-------NYALDPNLLESG----------------------------TEI 919
Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
+G + + L++E+++L +DR LR+IF GE N LP N+ +I
Sbjct: 920 VGDLKLQNLLDEEYKQLVQDRHFLRKIFMDGEHNWPLPVNIRRII 964
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 81/158 (51%), Gaps = 37/158 (23%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDP----TRISPWLLRIELDRKRM 1584
L VT + IYYDPDP +TVI ED+E + +++ + D + SPWLLR+ELDR M
Sbjct: 1143 LKSVTVASEIYYDPDPSSTVIEEDEEIIQLHFSLMDEETEASLKHQSPWLLRLELDRVAM 1202
Query: 1585 TDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAE 1644
TDK LTM + E KI F +DL I+++DNAE
Sbjct: 1203 TDKDLTMGQVGE----------------------------KIKETFKNDLFVIWSEDNAE 1234
Query: 1645 KLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEET 1682
KL++R R++ D K D E + E+D L+ IE T
Sbjct: 1235 KLIIRCRVVR--DPKTLDAE---AEAEEDHMLKKIENT 1267
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 24/122 (19%)
Query: 1496 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPEDQEF 1555
P QI++PQ+N+P MGIVQDTL +RKMT RD F+ E +
Sbjct: 508 PLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFI---------------------ELDQV 546
Query: 1556 VNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPTDK 1615
+N+ Y +PD+D +P +L+ + + K+L AI I+ D+ T LSP D
Sbjct: 547 LNMLYWIPDWDGVIPTPTILK---PKPLWSGKQLLSMAIPSGIHLQRFDEGTTYLSPKDN 603
Query: 1616 KL 1617
+
Sbjct: 604 GM 605
>sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO21 PE=1
SV=2
Length = 1733
Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/420 (49%), Positives = 269/420 (64%), Gaps = 55/420 (13%)
Query: 73 EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
+Q++N+L ++P WDG +P P I+KPKPLW+GKQ+ S+ IP +++ R DE +
Sbjct: 544 DQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRF------DEGT-- 595
Query: 133 YQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVN 192
+SP D +++ G ++ G++ KK++G+S+G L+H+ E G +VC + +GNIQ VVN
Sbjct: 596 -TLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVN 654
Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
WLL HN G S GIGD
Sbjct: 655 FWLL---------------------------------------HN-------GFSTGIGD 668
Query: 253 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDK 312
TIAD T EI I +AK+ V++V ++A L G TLR++FE+ V R LN+ARDK
Sbjct: 669 TIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDK 728
Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
G A+ +L + NN+K MV+AGSKGS INI+Q+ ACVGQQ+VEGKRI FGF RTLPHF
Sbjct: 729 AGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFS 788
Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E +
Sbjct: 789 KDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDI 848
Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTL 492
MVHYD T RNS+G +IQ YGEDG+ +E Q +DT+ S FE +YR D N TL
Sbjct: 849 MVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTL 908
Score = 316 bits (809), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 180/478 (37%), Positives = 279/478 (58%), Gaps = 60/478 (12%)
Query: 955 GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA----- 1009
G++++ + A +A LF CL+RS L T+ V + YRL+ +AF+W++ IE +F ++
Sbjct: 1002 GKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPG 1061
Query: 1010 QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGFVE 1051
+++ + Q+ V K++ G R + + + K+ P ++E
Sbjct: 1062 EMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLE 1121
Query: 1052 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVI 1111
+ A ++ R + T +K+ VT + IYYDPDP++TVI
Sbjct: 1122 PGHAADQEQAKLI------RSAIEHTTLKS------------VTIASEIYYDPDPRSTVI 1163
Query: 1112 PEDQEFVNVYYEMPD------FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFG 1165
PED+E + +++ + D FD + SPWLLR+ELDR M DK LTM + E+I F
Sbjct: 1164 PEDEEIIQLHFSLLDEEAEQSFD--QQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFK 1221
Query: 1166 DDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQG 1225
+DL I+++DN EKL++R R++ DA + E+D L+ IE ML ++TL+G
Sbjct: 1222 NDLFVIWSEDNDEKLIIRCRVVRPKSL------DAETEAEEDHMLKKIENTMLENITLRG 1275
Query: 1226 IEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSN 1285
+E I +V M R + + +GE+ +W+LETDG +L +V++ +DP R ++N
Sbjct: 1276 VENIERVVMM-----KYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTN 1330
Query: 1286 DICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1345
+I +VLGIEA R ++ KE+ V+ G YVNYRH+ALL DVMT +G L ++TRHG N
Sbjct: 1331 SFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFN 1390
Query: 1346 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1403
R +TGALMRCSFEETV++L +A A AE D RGVSEN+I+GQ+ +GTG FD+++D E
Sbjct: 1391 RSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEE 1448
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/102 (67%), Positives = 80/102 (78%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
AQ+ ACVGQQ+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 759 AQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAM 818
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
GGREGLIDTAVKTAET + L + + ++YD +N++
Sbjct: 819 GGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSL 860
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 98/138 (71%), Gaps = 3/138 (2%)
Query: 751 NLMEVIFI--LQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLAL 808
NL EV+ + + +++ N + + +++ + + R ++ KE+ V+ G YVNYRH+AL
Sbjct: 1312 NLSEVMTVPGIDPTRIYTNSFIDIM-EVLGIEAGRAALYKEVYNVIASDGSYVNYRHMAL 1370
Query: 809 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 868
L DVMT +G L ++TRHG NR +TGALMRCSFEETV++L +A A AE D RGVSEN+I+
Sbjct: 1371 LVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVIL 1430
Query: 869 GQLPRMGTGCFDLLLDAE 886
GQ+ +GTG FD+++D E
Sbjct: 1431 GQMAPIGTGAFDVMIDEE 1448
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 88/165 (53%), Gaps = 35/165 (21%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRL+KA+E +MVHYD T RNS+G +IQ YGEDG+ +E Q +DT+ S FE
Sbjct: 835 GYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFE 894
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
+YR D + N D L+ +++ S E+
Sbjct: 895 KRYRVD---------LLNTD------------HTLDPSLLESGS--------------EI 919
Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
+G + L++E+++L +DR+ LRE+F GE+N LP N+ +I
Sbjct: 920 LGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRII 964
Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 74/119 (62%), Gaps = 8/119 (6%)
Query: 519 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
KE+ V+ G YVNYRH+ALL DVMT +G L ++TRHG NR +TGALMRCSFEETV++L
Sbjct: 1350 KEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEIL 1409
Query: 579 MDAAAHAEADPMRGYIQRRLIKAME-------SVMVHYDCTVRNSVGQLI-QLRYGEDG 629
+A A AE D RG + ++ M VM+ + V+ Q I ++ G+DG
Sbjct: 1410 FEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDG 1468
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 90/169 (53%), Gaps = 43/169 (25%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD------FDPTRISPWLLRIELDRK 1582
L VT + IYYDPDP++TVIPED+E + +++ + D FD + SPWLLR+ELDR
Sbjct: 1143 LKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFD--QQSPWLLRLELDRA 1200
Query: 1583 RMTDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDN 1642
M DK LTM + E+I F +DL I+++DN
Sbjct: 1201 AMNDKDLTMGQV----------------------------GERIKQTFKNDLFVIWSEDN 1232
Query: 1643 AEKLVLRIRIM--NSDDSKMQDEED-AVDKMEDDMF----LRCIEETDR 1684
EKL++R R++ S D++ + EED + K+E+ M LR +E +R
Sbjct: 1233 DEKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTMLENITLRGVENIER 1281
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 24/122 (19%)
Query: 1496 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPEDQEF 1555
P QI++PQ+N+P MGIVQDTL +RK+T RD F+ E +
Sbjct: 508 PLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFI---------------------ELDQV 546
Query: 1556 VNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPTDK 1615
+N+ Y +PD+D +P +++ + + K++ AI I+ D+ T LSP D
Sbjct: 547 LNMLYWVPDWDGVIPTPAIIK---PKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDN 603
Query: 1616 KL 1617
+
Sbjct: 604 GM 605
>sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1 (Fragments) OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB1 PE=3 SV=2
Length = 1579
Score = 363 bits (931), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 205/474 (43%), Positives = 296/474 (62%), Gaps = 55/474 (11%)
Query: 955 GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA----- 1009
G+ L K++ ENATLLFQCLVRS L T+ V E +RL+ +FEW +GEIE +FQ++
Sbjct: 835 GDSPLVKESQENATLLFQCLVRSRLATRRVIEEFRLNRMSFEWAMGEIETQFQKSLVHPG 894
Query: 1010 QVIACVGQQN-----------------VEGKRIPFGF-RKRTLPHFIKDDYGPESRGFVE 1051
+++ + Q+ V K + G R + + + K+ P ++E
Sbjct: 895 EMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLE 954
Query: 1052 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVI 1111
A + ++ ++ +A++ NV TA+T I+YDPDP++TV+
Sbjct: 955 KDIAADIEKAK-----------VVQSAIEHTTLKNV-------TASTEIFYDPDPRSTVL 996
Query: 1112 PEDQEFVNVYYEMPDFDPT----RISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD 1167
ED + V Y+ +PD + SPWLLR+ELDR +M DK+LTM ++EKI+ FG+D
Sbjct: 997 EEDYDTVEAYFAIPDEKVEESIEKQSPWLLRLELDRAKMLDKQLTMAQVAEKISQNFGED 1056
Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIE 1227
L I++DD A+KL++R R++ D K DE+ VD E+D L+ IEA+ML ++L+GI+
Sbjct: 1057 LFVIWSDDTADKLIIRCRVVR--DPKSLDED--VDA-EEDQILKRIEAHMLESISLRGIQ 1111
Query: 1228 AIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDI 1287
I +V+M K + E+GEFK +W+LETDG +L V++ VD RT+SN+
Sbjct: 1112 GITRVFMM-----QHKLSLPDETGEFKQGQEWVLETDGVNLADVMAVPGVDAKRTYSNNF 1166
Query: 1288 CEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 1347
EI VLGIEA R ++ KE+ V+ F G YVNYRH+ALL DVMTA+GHLMAITRHGINR
Sbjct: 1167 IEILSVLGIEATRSALFKEILNVIAFDGSYVNYRHMALLVDVMTARGHLMAITRHGINRA 1226
Query: 1348 DTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1401
DTGALMRCSFEETV++L++A A AE D G+SEN+++GQL +GTG FD+++D
Sbjct: 1227 DTGALMRCSFEETVEILLEAGAAAELDDCHGISENVVLGQLAPLGTGAFDVMVD 1280
Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 125/194 (64%), Positives = 145/194 (74%), Gaps = 2/194 (1%)
Query: 293 TLRQTF--ENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 350
TLR F +QV +L D G +L + NN+K MVV+GSKGS INISQ+ ACVG
Sbjct: 539 TLRDIFIEYDQVMNMLYWIPDWDGVIPPMNLKDLNNVKQMVVSGSKGSFINISQMSACVG 598
Query: 351 QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID 410
QQ VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM GREGLID
Sbjct: 599 QQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLID 658
Query: 411 TAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTV 470
TAVKTAETGYIQRRL+KA+E +MVHYD T RNS+G +IQ YGEDG+ G VE Q +D +
Sbjct: 659 TAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGVDGTQVESQSVDVI 718
Query: 471 ALSHKKFEDKYRFD 484
+ + FE +YR D
Sbjct: 719 PGTDESFERRYRVD 732
Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 67/118 (56%), Positives = 91/118 (77%)
Query: 767 NENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHG 826
+ N + ++ + + R ++ KE+ V+ F G YVNYRH+ALL DVMTA+GHLMAITRHG
Sbjct: 1163 SNNFIEILSVLGIEATRSALFKEILNVIAFDGSYVNYRHMALLVDVMTARGHLMAITRHG 1222
Query: 827 INRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
INR DTGALMRCSFEETV++L++A A AE D G+SEN+++GQL +GTG FD+++D
Sbjct: 1223 INRADTGALMRCSFEETVEILLEAGAAAELDDCHGISENVVLGQLAPLGTGAFDVMVD 1280
Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/102 (65%), Positives = 79/102 (77%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+ ACVGQQ VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 591 SQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 650
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
GREGLIDTAVKTAET + L + + ++YD +N++
Sbjct: 651 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 692
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 61/74 (82%)
Query: 519 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
KE+ V+ F G YVNYRH+ALL DVMTA+GHLMAITRHGINR DTGALMRCSFEETV++L
Sbjct: 1184 KEILNVIAFDGSYVNYRHMALLVDVMTARGHLMAITRHGINRADTGALMRCSFEETVEIL 1243
Query: 579 MDAAAHAEADPMRG 592
++A A AE D G
Sbjct: 1244 LEAGAAAELDDCHG 1257
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 106/223 (47%), Gaps = 50/223 (22%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRL+KA+E +MVHYD T RNS+G +IQ YGEDG+ G VE Q +D + + + FE
Sbjct: 667 GYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGVDGTQVESQSVDVIPGTDESFE 726
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
+YR D + + R L+ SG +E+
Sbjct: 727 RRYRVDLLDPEKCIR-------DSLLESG----------------------------KEV 751
Query: 712 MGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEVIFILQRWKLWGN--- 767
G ++ L++E+E+LC DR LRE+ F++G+ LP NL +I Q+ G
Sbjct: 752 RGDVNLQRVLDEEYEQLCNDRRYLREVCFTNGDYTWPLPVNLRRIIQNAQQLFHGGRHKA 811
Query: 768 ---------ENLRFLCKIIFVLSVRKSVEKEM--NTVLQFYGL 799
E ++ LCK + VL + KE N L F L
Sbjct: 812 SDLRLEEIVEGVKELCKKLLVLRGDSPLVKESQENATLLFQCL 854
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 84/153 (54%), Gaps = 36/153 (23%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPT----RISPWLLRIELDRKRM 1584
L VTA+T I+YDPDP++TV+ ED + V Y+ +PD + SPWLLR+ELDR +M
Sbjct: 976 LKNVTASTEIFYDPDPRSTVLEEDYDTVEAYFAIPDEKVEESIEKQSPWLLRLELDRAKM 1035
Query: 1585 TDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAE 1644
DK+LTM ++EKI+ FG+DL I++DD A+
Sbjct: 1036 LDKQLTMAQVAEKISQNFGEDLFV----------------------------IWSDDTAD 1067
Query: 1645 KLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1677
KL++R R++ D K DE+ VD ED + R
Sbjct: 1068 KLIIRCRVVR--DPKSLDED--VDAEEDQILKR 1096
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD+F++ +Y+ PD +
Sbjct: 505 LSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIEYDQVMNMLYWIPDWDGVI 564
Query: 1549 IPEDQEFVNVYYEM 1562
P + + +N +M
Sbjct: 565 PPMNLKDLNNVKQM 578
>sp|Q8SSC4|RPB1_ENCCU DNA-directed RNA polymerase II subunit RPB1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB1 PE=3 SV=1
Length = 1599
Score = 350 bits (898), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 186/396 (46%), Positives = 249/396 (62%), Gaps = 57/396 (14%)
Query: 89 MPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHG 148
+ +P I KP LWTGKQV S ++P N+N S H DD+ + GDT+V+++ G
Sbjct: 551 LRKPAIAKPMRLWTGKQVLSFVLP-NLNYIGLSSEHDDDDKE------NIGDTRVIIQDG 603
Query: 149 SLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTI 208
+ G++ KK+ G + G L+HI F + G + +F+ +Q ++N ++ GI
Sbjct: 604 YIHSGVIDKKAAGATQGGLVHIIFNDFGPKRAAQFFDGVQRMINAFM------TGI---- 653
Query: 209 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIK 268
T+ S+GIGDTIADP+T ++ AI+
Sbjct: 654 ---HTF--------------------------------SMGIGDTIADPKTVKVVESAIR 678
Query: 269 KAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLK 328
KAKE+V +I+ A LE PG T++++FE+ +N +LN ARD +G SA++SL+E NN+K
Sbjct: 679 KAKEEVSALIENARQNRLERLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSENNNMK 738
Query: 329 AMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY 388
MV+AGSKGS INISQV ACVGQQNVEGKRIPFGF RTLPHF+KDDY +SRGFVENSY
Sbjct: 739 TMVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGKSRGFVENSY 798
Query: 389 LAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLI 448
L GL P EFFFHAMGGREGLIDTA+KTAETGYIQRRL+KA+E +V D +VR+ G +
Sbjct: 799 LTGLDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLVY 858
Query: 449 QLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
Q++YGEDG +E Q++D K F +Y D
Sbjct: 859 QIKYGEDGFDATFLESQKVDV-----KNFTKRYYID 889
Score = 224 bits (572), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 151/488 (30%), Positives = 244/488 (50%), Gaps = 40/488 (8%)
Query: 970 LFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV-----IACVGQQNVEGKR 1024
+ L+R+ L K V +RL++EAF W+V I+ + +A++ + + Q+V
Sbjct: 1002 ILNVLIRTNLSVKRVLLEHRLNTEAFNWVVEVIDAKILKAKITPNEMVGTLAAQSVGEPA 1061
Query: 1025 IPFGFRKRTLPHFIKD-DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAE 1083
L G + N TPS + + G A KT +
Sbjct: 1062 TQMTLNTFHLAGVASTVTMGVPRLKEIFNVTKNLKTPSMKIY--LDREHGKSIEAAKTIQ 1119
Query: 1084 TVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIEL 1141
+ + + + IYYDP+ T I +D++FV Y+E PD D + +SP+L+R+ +
Sbjct: 1120 NEIECLTVKDLCLFSEIYYDPEITGTEISDDKDFVEAYFEFPDEDVDFSCLSPFLMRLVV 1179
Query: 1142 DRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAV 1201
DR ++ + + +E ++ I G + I +D+NA +V+R+R S+D + A+
Sbjct: 1180 DRAKLVGRGINLEYVAMFIRKELGGGAHVICSDENAVNMVVRVRTTKSEDESLNFYTTAL 1239
Query: 1202 DKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLL 1261
N L + L G + + KVY+ ++ K R +W L
Sbjct: 1240 --------------NSLLRLQLGGYKNVKKVYI----SEDKDR------------KEWYL 1269
Query: 1262 ETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYR 1321
+TDG L ++L V+ T SND+ EI + LGIEA R+S+ +E+ V+ G YVNYR
Sbjct: 1270 QTDGICLSQILGNPAVNSRLTISNDLVEIAETLGIEAARESILRELTIVIDGNGSYVNYR 1329
Query: 1322 HLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSE 1381
H++LL DVMT +G+L ITRHG+N+ GAL R SFEETV++L+DAA +E + RG++E
Sbjct: 1330 HMSLLADVMTMRGYLCGITRHGVNKVGAGALKRSSFEETVEILLDAALVSEKNICRGITE 1389
Query: 1382 NIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGMFFGSAATPSSIPGPPAW 1441
NI+MGQL MGTG +++LD +K I + PA + ++ S W
Sbjct: 1390 NIMMGQLAPMGTGNIEIMLDMKKLDKAIPLSNPVFKPNEPATPVISTPSSDSFSISSGNW 1449
Query: 1442 YPIHIAIS 1449
P H+ ++
Sbjct: 1450 SPTHLEMA 1457
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/110 (63%), Positives = 80/110 (72%), Gaps = 3/110 (2%)
Query: 975 VRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTL 1034
V T + ++EN + + L G + +QV ACVGQQNVEGKRIPFGF RTL
Sbjct: 722 VSGTSAQRSLSENNNMKTMV---LAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTL 778
Query: 1035 PHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 1084
PHF+KDDY +SRGFVENSYL GL P EFFFHAMGGREGLIDTA+KTAET
Sbjct: 779 PHFVKDDYTGKSRGFVENSYLTGLDPEEFFFHAMGGREGLIDTAIKTAET 828
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 88/125 (70%), Gaps = 2/125 (1%)
Query: 773 LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
+ + + + + R+S+ +E+ V+ G YVNYRH++LL DVMT +G+L ITRHG+N+
Sbjct: 1298 IAETLGIEAARESILRELTIVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKVGA 1357
Query: 833 GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
GAL R SFEETV++L+DAA +E + RG++ENI+MGQL MGTG +++LD +K
Sbjct: 1358 GALKRSSFEETVEILLDAALVSEKNICRGITENIMMGQLAPMGTGNIEIMLDMKKLDKA- 1416
Query: 893 EIPLA 897
IPL+
Sbjct: 1417 -IPLS 1420
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 56/77 (72%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
S+ +E+ V+ G YVNYRH++LL DVMT +G+L ITRHG+N+ GAL R SFEETV
Sbjct: 1310 SILRELTIVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKVGAGALKRSSFEETV 1369
Query: 576 DVLMDAAAHAEADPMRG 592
++L+DAA +E + RG
Sbjct: 1370 EILLDAALVSEKNICRG 1386
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 27/172 (15%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRL+KA+E +V D +VR+ G + Q++YGEDG +E Q++D K F
Sbjct: 829 GYIQRRLVKALEDAIVRQDESVRSGNGLVYQIKYGEDGFDATFLESQKVDV-----KNFT 883
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMG--SGDVISELEKEMVDHFSWKQLRRIFNEDVLR 709
+Y D +L I + V E+ G S DV +L+K + + W + IF
Sbjct: 884 KRYYIDMFGTEEL-EIKHGQVSEEVYGMLSSDV--DLQKLLDQEYEW-LVGEIFEGP--- 936
Query: 710 ELMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQR 761
++ G+V ++E++++ +R+I+ +S V+ PCN ++ +R
Sbjct: 937 PILSVGEV--DIERDYK--------VRDIY---QSAVMSPCNFTRILATAKR 975
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 41/185 (22%)
Query: 1536 TAIYYDPDPQNTVIPEDQEFVNVYYEMP--DFDPTRISPWLLRIELDRKRMTDKKLTMEA 1593
+ IYYDP+ T I +D++FV Y+E P D D + +SP+L+R+ +DR ++ + + +E
Sbjct: 1134 SEIYYDPEITGTEISDDKDFVEAYFEFPDEDVDFSCLSPFLMRLVVDRAKLVGRGINLEY 1193
Query: 1594 ISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1653
+ A F I G + I +D+NA +V+R+R
Sbjct: 1194 V-----AMF-----------------------IRKELGGGAHVICSDENAVNMVVRVRTT 1225
Query: 1654 NSDDSKMQDEEDAVDKMEDDMFLRCIEETDRSFVKVDFVEPKDLVEWKTLLKQMHSD-FC 1712
S+D + A++ + LR ++ KV E KD EW + +D C
Sbjct: 1226 KSEDESLNFYTTALNSL-----LRLQLGGYKNVKKVYISEDKDRKEW-----YLQTDGIC 1275
Query: 1713 LAQII 1717
L+QI+
Sbjct: 1276 LSQIL 1280
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 39/50 (78%)
Query: 30 EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNIL 79
E+S+ +G D K++RP+WM++TVL VPP +VRP++VM GS R ++ + + L
Sbjct: 188 EDSVYMGFDLKYSRPEWMILTVLLVPPPAVRPSIVMEGSLRGEDDLTHKL 237
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIY 1539
+E + + RQII+PQ+N+PVMGIVQDTLT +R T RD FL++ + +Y
Sbjct: 470 LEELALVSRQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMSLLY 520
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium falciparum
(isolate CDC / Honduras) GN=RPII PE=3 SV=1
Length = 2452
Score = 307 bits (787), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 173/370 (46%), Positives = 233/370 (62%), Gaps = 50/370 (13%)
Query: 115 VNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLE 174
+N+ R ST D++ PY I+ G KV++++ LL GI+CK+++G+SSGSL+H+ + E
Sbjct: 741 INLMRDSSTSSKDDN--PYCSINDG--KVIIKNNELLSGIICKRTVGSSSGSLIHVLWHE 796
Query: 175 LGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQK 234
+G + +D + +QK
Sbjct: 797 MGPD---------------------------------------------KTKDFLSALQK 811
Query: 235 AHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTL 294
N LE G ++ D IA + +++ + K+K +V ++++KA +LE PG +L
Sbjct: 812 VTNNWLEYV-GFTVSCSDIIASNKVLGKVREILDKSKSEVSKLVEKAQKGELECQPGKSL 870
Query: 295 RQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 354
++FE +VN LN AR+ G A +SL E NN+ +MV +GSKGS INISQ+I+CVGQQNV
Sbjct: 871 YESFETRVNNELNCAREMAGKVASESLDERNNIFSMVASGSKGSIINISQIISCVGQQNV 930
Query: 355 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 414
EGKRIPFGF R+LPHFIK DYGPESRGFV NSYL+GLTP E FFHAMGGREG+IDTA K
Sbjct: 931 EGKRIPFGFNHRSLPHFIKFDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDTACK 990
Query: 415 TAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSH 474
T+ETGYIQRRLIKAME VMV YD TVRNS G +IQ YGEDG+ GE +E Q ID + L +
Sbjct: 991 TSETGYIQRRLIKAMEDVMVQYDRTVRNSYGDIIQFLYGEDGMAGEYIEDQIIDLMKLDN 1050
Query: 475 KKFEDKYRFD 484
K+ Y+++
Sbjct: 1051 KEINKLYKYN 1060
Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/203 (50%), Positives = 147/203 (72%), Gaps = 4/203 (1%)
Query: 1206 DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1265
+D FL+ + LS + L+GIE I KVYM + K +++G+F + W+L+TDG
Sbjct: 1865 EDTFLKKLMEQCLSTLKLRGIENITKVYMR----EESKITYDSDNGKFVRSSHWVLDTDG 1920
Query: 1266 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1325
+L + VD +T SNDI EIF+VLGIEAVR+++ KE+ TV+ F YVNYRHL++
Sbjct: 1921 CNLENIFCAPQVDFKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSI 1980
Query: 1326 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1385
LCDVMT KG+LM+ITRHGINR D G L++CSFEETV++L++AAA A+ D +RG++ENI++
Sbjct: 1981 LCDVMTQKGYLMSITRHGINRVDKGPLIKCSFEETVEILLEAAAFAQVDNLRGITENIML 2040
Query: 1386 GQLPRMGTGCFDLLLDAEKCKDG 1408
GQL ++GTG FD+++D +K D
Sbjct: 2041 GQLCKIGTGSFDIIIDNQKLNDA 2063
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 123/190 (64%), Gaps = 7/190 (3%)
Query: 750 CNLMEVIFILQ-RWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLAL 808
CNL + Q +K + ++ + +++ + +VR+++ KE+ TV+ F YVNYRHL++
Sbjct: 1921 CNLENIFCAPQVDFKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSI 1980
Query: 809 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 868
LCDVMT KG+LM+ITRHGINR D G L++CSFEETV++L++AAA A+ D +RG++ENI++
Sbjct: 1981 LCDVMTQKGYLMSITRHGINRVDKGPLIKCSFEETVEILLEAAAFAQVDNLRGITENIML 2040
Query: 869 GQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQS 928
GQL ++GTG FD+++D +K D + L T AG TP S+ QS
Sbjct: 2041 GQLCKIGTGSFDIIIDNQKLNDANQ-NLETIQDLTSAGF-----TTPDSLHVITPDGLQS 2094
Query: 929 TPAYNALMSP 938
A N + SP
Sbjct: 2095 PVAINTINSP 2104
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/96 (66%), Positives = 74/96 (77%)
Query: 1014 CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREG 1073
CVGQQNVEGKRIPFGF R+LPHFIK DYGPESRGFV NSYL+GLTP E FFHAMGGREG
Sbjct: 924 CVGQQNVEGKRIPFGFNHRSLPHFIKFDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREG 983
Query: 1074 LIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
+IDTA KT+ET + L + + + YD +N+
Sbjct: 984 IIDTACKTSETGYIQRRLIKAMEDVMVQYDRTVRNS 1019
Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 62/74 (83%)
Query: 519 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
KE+ TV+ F YVNYRHL++LCDVMT KG+LM+ITRHGINR D G L++CSFEETV++L
Sbjct: 1960 KELRTVISFDSSYVNYRHLSILCDVMTQKGYLMSITRHGINRVDKGPLIKCSFEETVEIL 2019
Query: 579 MDAAAHAEADPMRG 592
++AAA A+ D +RG
Sbjct: 2020 LEAAAFAQVDNLRG 2033
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 122/247 (49%), Gaps = 18/247 (7%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
+ D LS +A NAT+L + +R+ L +KL+ + +++S + +WL+ EIE F ++
Sbjct: 1341 INSNDTLSVEAQNNATILLKAHLRTYLNSKLLTQTHKVSVKGLDWLLQEIEKIFYKSLCH 1400
Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL-----TPSEFFF 1065
CVG + P HF + G L + TPS +
Sbjct: 1401 PGECVGALAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINIVKNVKTPSTTIY 1460
Query: 1066 ---HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
++ D K T L Q+T++ I YDP+ T++ ED+ +VN +Y
Sbjct: 1461 LDDMVSNDQQKAKDILTKLEYTT-----LKQLTSHAQIIYDPNTTTTILEEDKSWVNEFY 1515
Query: 1123 EMPDFDPTRIS--PWLLRIELDRKRMTDKKLTMEAISEKINAGF-GDDLNCIFNDDNAEK 1179
E PD D T+ S W+LRI+L + +KKLTM+ I I + F D+L+ I+ DDN+E
Sbjct: 1516 EFPDEDDTQYSLGEWVLRIQLTNIHVNEKKLTMKEIVYIIYSVFSSDELDIIYTDDNSED 1575
Query: 1180 LVLRIRI 1186
LVLRIR+
Sbjct: 1576 LVLRIRV 1582
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 48/66 (72%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRLIKAME VMV YD TVRNS G +IQ YGEDG+ GE +E Q ID + L +K+
Sbjct: 995 GYIQRRLIKAMEDVMVQYDRTVRNSYGDIIQFLYGEDGMAGEYIEDQIIDLMKLDNKEIN 1054
Query: 652 DKYRFD 657
Y+++
Sbjct: 1055 KLYKYN 1060
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 34/143 (23%)
Query: 1512 VQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRIS 1571
+D LT + T L ++T++ I YDP+ T++ ED+ +VN +YE PD D T+ S
Sbjct: 1472 AKDILTKLEYTT-----LKQLTSHAQIIYDPNTTTTILEEDKSWVNEFYEFPDEDDTQYS 1526
Query: 1572 --PWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAG 1629
W+LRI+L + +KKLTM+ I I + F
Sbjct: 1527 LGEWVLRIQLTNIHVNEKKLTMKEIVYIIYSVFS-------------------------- 1560
Query: 1630 FGDDLNCIFNDDNAEKLVLRIRI 1652
D+L+ I+ DDN+E LVLRIR+
Sbjct: 1561 -SDELDIIYTDDNSEDLVLRIRV 1582
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 35/43 (81%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
++++ + RQI++PQ N+PVMGIVQD+L A+RK T+RD FL K
Sbjct: 534 IKHLMIVQRQIVSPQGNKPVMGIVQDSLLAIRKFTRRDNFLTK 576
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 34/40 (85%)
Query: 72 QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLII 111
+E++M++L+++P W+ +P P I+KP+ LWTGKQ+FS+++
Sbjct: 576 KEEVMSLLIWIPYWNHVIPTPAIIKPRALWTGKQIFSMLL 615
>sp|P17545|RPB1B_TRYBB DNA-directed RNA polymerase II subunit RPB1-B OS=Trypanosoma brucei
brucei GN=TRP5.9 PE=1 SV=1
Length = 1766
Score = 297 bits (760), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 165/411 (40%), Positives = 227/411 (55%), Gaps = 59/411 (14%)
Query: 75 MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
+ ++ ++L +W ++P P ILKP+PLWTGKQVFSLI+P VN H P D P+
Sbjct: 552 VQSVALWLDLW--QLPIPAILKPRPLWTGKQVFSLILP-EVN----HPATPQDRPPFPHN 604
Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
D+ V++ G LL G + K +G + GSL+H+ F E G + RF +Q V +
Sbjct: 605 -----DSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFF 659
Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
LL G S+G+ DT+
Sbjct: 660 LL----------------------------------------------NFGFSVGVQDTV 673
Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
AD T ++ + K + +V ++ A+N L G TL Q+FE VN LN R++
Sbjct: 674 ADSDTLRQMNDVLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAA 733
Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
A ++ N+ K M+ AGSKG+++NI Q+ VGQQNV G RIPFGFR+RTLPHF+ D
Sbjct: 734 KKALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLD 793
Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
DYG SRG Y+ GL P EFFFH M GREGLIDTAVKT++TGY+QR+LIKA+E V
Sbjct: 794 DYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHA 853
Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVAL-SHKKFEDKYRFD 484
YD TVRN+ +LIQ YGEDGL G +E ++ + K+ ED Y+++
Sbjct: 854 AYDGTVRNANDELIQFMYGEDGLDGARIEGGQLFPLPFRDDKEMEDTYKYE 904
Score = 198 bits (504), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 160/571 (28%), Positives = 269/571 (47%), Gaps = 90/571 (15%)
Query: 882 LLDAEKCKDGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAA 941
L D +K K + +P+ G + A G + S++SP +T LM +
Sbjct: 958 LEDRDKLK--LNLPVNPGRLIQNARSTMGKRSQVSNLSP-ITIIDHVRKLQEDLMKLFPS 1014
Query: 942 MTPGGPGFSPSVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 1001
GG G+ + LS++ E+A LF +R L +K V + Y+L+ AFE+L+ E
Sbjct: 1015 YHRGGDGYI-----RNTLSRERIESALTLFNVHLRQLLASKRVLKEYKLNDRAFEYLLKE 1069
Query: 1002 IENRFQQA-----QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIK 1039
I ++ Q+ + I + Q+ + K + G +P +
Sbjct: 1070 IRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLG-----VPRLL- 1123
Query: 1040 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVF--LFQVTAN 1097
E N A +T S F + D + +++ + L +T
Sbjct: 1124 -----ELLNVSRNQKHASMTVSLFPPY---------DEKRNAQKAQHLIEYCTLESITRR 1169
Query: 1098 TAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRI--------SPWLLRIELDRKRMTDK 1149
YDPDP++TV+ D++ + + + + D + SPW++R+ELD +TDK
Sbjct: 1170 IQFIYDPDPRHTVVEADRDILELEWNVMDESDAELRIQEVVAGSPWVVRLELDVDMVTDK 1229
Query: 1150 KLTMEAISEKINAGFGDDLNCIFND---DNAEKLVLRIRIMNSDDSKMQDEEDAVDKMED 1206
L M+ + + I D + I +N + +R+R S+ + D++ K++
Sbjct: 1230 ALDMKDVKQAI---LRVDESYIIETGMANNVRQRTIRMR------SRYNEGADSIPKLK- 1279
Query: 1207 DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGT 1266
R I A +L+ + L+GI + + + D+ + + +G+ W ++TDGT
Sbjct: 1280 ----REIPA-LLARVHLRGIPGVRRALL----KDTTEFTVDQATGKMSGNKIWAIDTDGT 1330
Query: 1267 SLMKVL-------SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVN 1319
+L + + ++ V+T SN + E+ +LGIEA R + E+ YGL +N
Sbjct: 1331 ALRRAFIGVVGEDGKNIINAVKTSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNIN 1390
Query: 1320 YRHLALLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDAAAHAEADPMRG 1378
YRH +L D + G+LMA++R GINR DT G LMRCSFEETV VLM AA+ E DP+RG
Sbjct: 1391 YRHYTILVDTICQHGYLMAVSRSGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRG 1450
Query: 1379 VSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 1409
VS N+++G R+GTG FDL+L+ + +
Sbjct: 1451 VSANLVLGNQARVGTGLFDLVLNMAALQQAV 1481
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Query: 773 LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
+C ++ + + R + E+ YGL +NYRH +L D + G+LMA++R GINR DT
Sbjct: 1361 VCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYLMAVSRSGINRSDT 1420
Query: 833 -GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDG 891
G LMRCSFEETV VLM AA+ E DP+RGVS N+++G R+GTG FDL+L+ +
Sbjct: 1421 SGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGTGLFDLVLNMAALQQA 1480
Query: 892 I 892
+
Sbjct: 1481 V 1481
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 72/123 (58%), Gaps = 4/123 (3%)
Query: 1010 QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 1069
Q+ VGQQNV G RIPFGFR+RTLPHF+ DDYG SRG Y+ GL P EFFFH M
Sbjct: 763 QIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMA 822
Query: 1070 GREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDP 1129
GREGLIDTAVKT++T + L + + YD TV + E + Y D
Sbjct: 823 GREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYD----GTVRNANDELIQFMYGEDGLDG 878
Query: 1130 TRI 1132
RI
Sbjct: 879 ARI 881
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 64/103 (62%), Gaps = 5/103 (4%)
Query: 495 VSSLRRVVNSKPLLIGCWKLTSVEKEMNTVLQ----FYGLYVNYRHLALLCDVMTAKGHL 550
+++++ N P + + + +M T L+ YGL +NYRH +L D + G+L
Sbjct: 1348 INAVKTSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYL 1407
Query: 551 MAITRHGINRQDT-GALMRCSFEETVDVLMDAAAHAEADPMRG 592
MA++R GINR DT G LMRCSFEETV VLM AA+ E DP+RG
Sbjct: 1408 MAVSRSGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRG 1450
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 31/149 (20%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVAL-SHKKF 650
GY+QR+LIKA+E V YD TVRN+ +LIQ YGEDGL G +E ++ + K+
Sbjct: 838 GYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLDGARIEGGQLFPLPFRDDKEM 897
Query: 651 EDKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRE 710
ED Y++ E ++ FS K + V +
Sbjct: 898 EDTYKY------------------------------EYDVDGTFSGKVGGNYMDPHVRKM 927
Query: 711 LMGSGDVISELEKEWEKLCEDREALREIF 739
L + +L++E+E+L DRE R++
Sbjct: 928 LRADPQNVRKLQEEYEQLTADREWSRKML 956
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRI--------SPWLLRIELD 1580
L+ +T YDPDP++TV+ D++ + + + + D + SPW++R+ELD
Sbjct: 1163 LESITRRIQFIYDPDPRHTVVEADRDILELEWNVMDESDAELRIQEVVAGSPWVVRLELD 1222
Query: 1581 RKRMTDKKLTMEAISEKI 1598
+TDK L M+ + + I
Sbjct: 1223 VDMVTDKALDMKDVKQAI 1240
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 1482 LLTLTLMVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
LLT ++E + V P+ ++P + P MGIVQD+L ++T +D FLDK
Sbjct: 501 LLTKAELIEMMMV-PKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDK 549
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 30 EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQE---QMMNIL 79
+++ ++G DP+ P +++TVLPVPP VRPA+ G + E Q+M+I+
Sbjct: 227 DDARLMGFDPQRCHPRDLVLTVLPVPPPQVRPAISFGGLRSDDELTHQIMSIV 279
>sp|P17546|RPB1A_TRYBB DNA-directed RNA polymerase II subunit RPB1-A OS=Trypanosoma brucei
brucei GN=TRP4.8 PE=1 SV=1
Length = 1766
Score = 297 bits (760), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 165/411 (40%), Positives = 227/411 (55%), Gaps = 59/411 (14%)
Query: 75 MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
+ ++ ++L +W ++P P ILKP+PLWTGKQVFSLI+P VN H P D P+
Sbjct: 552 VQSVALWLDLW--QLPIPAILKPRPLWTGKQVFSLILP-EVN----HPATPQDRPPFPHN 604
Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
D+ V++ G LL G + K +G + GSL+H+ F E G + RF +Q V +
Sbjct: 605 -----DSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFF 659
Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTI 254
LL G S+G+ DT+
Sbjct: 660 LL----------------------------------------------NFGFSVGVQDTV 673
Query: 255 ADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTG 314
AD T ++ + K + +V ++ A+N L G TL Q+FE VN LN R++
Sbjct: 674 ADSDTLRQMNDVLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAA 733
Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
A ++ N+ K M+ AGSKG+++NI Q+ VGQQNV G RIPFGFR+RTLPHF+ D
Sbjct: 734 KKALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLD 793
Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
DYG SRG Y+ GL P EFFFH M GREGLIDTAVKT++TGY+QR+LIKA+E V
Sbjct: 794 DYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHA 853
Query: 435 HYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVAL-SHKKFEDKYRFD 484
YD TVRN+ +LIQ YGEDGL G +E ++ + K+ ED Y+++
Sbjct: 854 AYDGTVRNANDELIQFMYGEDGLDGARIEGGQLFPLPFRDDKEMEDTYKYE 904
Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 160/569 (28%), Positives = 267/569 (46%), Gaps = 86/569 (15%)
Query: 882 LLDAEKCKDGIEIPLATGMMGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAA 941
L D +K K + +P+ G + A G + S++SP +T LM +
Sbjct: 958 LEDRDKLK--LNLPVNPGRLIQNARSTMGKRSQVSNLSP-ITIIDHVRKLQEDLMKLFPS 1014
Query: 942 MTPGGPGFSPSVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 1001
GG G+ + LS++ E+A LF +R L +K V + Y+L+ AFE+L+ E
Sbjct: 1015 YHRGGDGYI-----RNTLSRERIESALTLFNVHLRQLLASKRVLKEYKLNDRAFEYLLKE 1069
Query: 1002 IENRFQQA-----QVIACVGQQN-----------------VEGKRIPFGFRKRTLPHFIK 1039
I ++ Q+ + I + Q+ + K + G +P +
Sbjct: 1070 IRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLG-----VPRLL- 1123
Query: 1040 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTA 1099
E N A +T S F + + A+ + L +T
Sbjct: 1124 -----ELLNVSRNQKHASMTVSLFPPYDE-------KRNAQKAQHLIEYCTLESITRRIQ 1171
Query: 1100 IYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRI--------SPWLLRIELDRKRMTDKKL 1151
YDPDP++TV+ D++ + + + + D + SPW++R+ELD +TDK L
Sbjct: 1172 FIYDPDPRHTVVEADRDILELEWNVMDESDAELRIQEVVAGSPWVVRLELDVDMVTDKAL 1231
Query: 1152 TMEAISEKINAGFGDDLNCIFND---DNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDM 1208
M+ + + I D + I +N + +R+R S+ + D++ K++
Sbjct: 1232 DMKDVKQAI---LRVDESYIIETGMANNVRQRTIRMR------SRYNEGADSIPKLK--- 1279
Query: 1209 FLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSL 1268
R I A +L+ + L+GI + + + D+ + + +G+ W ++TDGT+L
Sbjct: 1280 --REIPA-LLARVHLRGIPGVRRALL----KDTTEFTVDQATGKMSGNKIWAIDTDGTAL 1332
Query: 1269 MKVL-------SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYR 1321
+ + ++ V+T SN + E+ +LGIEA R + E+ YGL +NYR
Sbjct: 1333 RRAFIGVVGEDGKNIINAVKTSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYR 1392
Query: 1322 HLALLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDAAAHAEADPMRGVS 1380
H +L D + G+LMA++R GINR DT G LMRCSFEETV VLM AA+ E DP+RGVS
Sbjct: 1393 HYTILVDTICQHGYLMAVSRSGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVS 1452
Query: 1381 ENIIMGQLPRMGTGCFDLLLDAEKCKDGI 1409
N+++G R+GTG FDL+L+ + +
Sbjct: 1453 ANLVLGNQARVGTGLFDLVLNMAALQQAV 1481
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Query: 773 LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
+C ++ + + R + E+ YGL +NYRH +L D + G+LMA++R GINR DT
Sbjct: 1361 VCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYLMAVSRSGINRSDT 1420
Query: 833 -GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDG 891
G LMRCSFEETV VLM AA+ E DP+RGVS N+++G R+GTG FDL+L+ +
Sbjct: 1421 SGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGTGLFDLVLNMAALQQA 1480
Query: 892 I 892
+
Sbjct: 1481 V 1481
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 72/123 (58%), Gaps = 4/123 (3%)
Query: 1010 QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 1069
Q+ VGQQNV G RIPFGFR+RTLPHF+ DDYG SRG Y+ GL P EFFFH M
Sbjct: 763 QIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMA 822
Query: 1070 GREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDP 1129
GREGLIDTAVKT++T + L + + YD TV + E + Y D
Sbjct: 823 GREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYD----GTVRNANDELIQFMYGEDGLDG 878
Query: 1130 TRI 1132
RI
Sbjct: 879 ARI 881
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 64/103 (62%), Gaps = 5/103 (4%)
Query: 495 VSSLRRVVNSKPLLIGCWKLTSVEKEMNTVLQ----FYGLYVNYRHLALLCDVMTAKGHL 550
+++++ N P + + + +M T L+ YGL +NYRH +L D + G+L
Sbjct: 1348 INAVKTSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYL 1407
Query: 551 MAITRHGINRQDT-GALMRCSFEETVDVLMDAAAHAEADPMRG 592
MA++R GINR DT G LMRCSFEETV VLM AA+ E DP+RG
Sbjct: 1408 MAVSRSGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRG 1450
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 31/149 (20%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVAL-SHKKF 650
GY+QR+LIKA+E V YD TVRN+ +LIQ YGEDGL G +E ++ + K+
Sbjct: 838 GYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLDGARIEGGQLFPLPFRDDKEM 897
Query: 651 EDKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRE 710
ED Y++ E ++ FS K + V +
Sbjct: 898 EDTYKY------------------------------EYDVDGTFSGKVGGNYMDPHVRKM 927
Query: 711 LMGSGDVISELEKEWEKLCEDREALREIF 739
L + +L++E+E+L DRE R++
Sbjct: 928 LRADPQNVRKLQEEYEQLTADREWSRKML 956
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRI--------SPWLLRIELD 1580
L+ +T YDPDP++TV+ D++ + + + + D + SPW++R+ELD
Sbjct: 1163 LESITRRIQFIYDPDPRHTVVEADRDILELEWNVMDESDAELRIQEVVAGSPWVVRLELD 1222
Query: 1581 RKRMTDKKLTMEAISEKI 1598
+TDK L M+ + + I
Sbjct: 1223 VDMVTDKALDMKDVKQAI 1240
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 1482 LLTLTLMVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
LLT ++E + V P+ ++P + P MGIVQD+L ++T +D FLDK
Sbjct: 501 LLTKAELIEMMMV-PKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDK 549
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 30 EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQE---QMMNIL 79
+++ ++G DP+ P +++TVLPVPP VRPA+ G + E Q+M+I+
Sbjct: 227 DDARLMGFDPQRCHPRDLVLTVLPVPPPQVRPAISFGGLRSDDELTHQIMSIV 279
>sp|Q86AQ5|RPC1_DICDI DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium
discoideum GN=polr3a PE=3 SV=1
Length = 1450
Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/373 (37%), Positives = 194/373 (52%), Gaps = 53/373 (14%)
Query: 89 MPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ---WISPGDTKVVV 145
+P P ILKP LWTGKQ+F +++ +V ++H + S Y ++ P D V
Sbjct: 572 LPPPAILKPVELWTGKQIFEVLLRPSV---KSHVLCNFETRSRTYSKNLYMCPKDGYVYF 628
Query: 146 EHGSLLMGILCKKSLGT-SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
+ L+ G + K +G + SL HI + + + + +L +G SIGI
Sbjct: 629 RNSELMCGSIDKSIIGGGNKNSLFHILMRDFSPTIAANCMTRLAKLCARFLGDQGFSIGI 688
Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
D P L+ + K ++IE K + L+ S
Sbjct: 689 PDI--KPAEDLD------RKKREIIETAYKKCAVFLKDYESGS----------------- 723
Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
L+ + G ++ QTFE ++N+ L+ RD G L Y
Sbjct: 724 ---------------------LQLSSGCSMEQTFEAKMNQTLSQIRDDCGKLCVNDLPNY 762
Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
N+ M + GSKGSNINI+Q+I CVGQQ V G RIP GF RT PHF P+S+GFV
Sbjct: 763 NSPLIMGLCGSKGSNINIAQMICCVGQQIVNGTRIPNGFTNRTTPHFKHFAKNPKSKGFV 822
Query: 385 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSV 444
NS+ G+ P+EFFFH MGGREGL+DTAVKTAETGY+QRRL+KA+E + HYD TVR+S+
Sbjct: 823 SNSFYTGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDYTVRDSI 882
Query: 445 GQLIQLRYGEDGL 457
G ++Q YG+DGL
Sbjct: 883 GGIVQFIYGDDGL 895
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 86/157 (54%), Gaps = 9/157 (5%)
Query: 954 AGEDQLSKQANENATLLFQCLVRSTL------CTKLVAENY-RLSSEAFEWLVGEIENRF 1006
+G QLS + T F+ + TL C KL + +S L G +
Sbjct: 721 SGSLQLSSGCSMEQT--FEAKMNQTLSQIRDDCGKLCVNDLPNYNSPLIMGLCGSKGSNI 778
Query: 1007 QQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFH 1066
AQ+I CVGQQ V G RIP GF RT PHF P+S+GFV NS+ G+ P+EFFFH
Sbjct: 779 NIAQMICCVGQQIVNGTRIPNGFTNRTTPHFKHFAKNPKSKGFVSNSFYTGMIPTEFFFH 838
Query: 1067 AMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
MGGREGL+DTAVKTAET + L + + + +YD
Sbjct: 839 TMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYD 875
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Query: 1244 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1303
R++I++ E + L+E G L V++ + T SN I E LGIE R ++
Sbjct: 1280 RVVISKVDEKQERYQLLVE--GYDLRAVMATPGIKGTHTTSNHIMECENTLGIETARNTI 1337
Query: 1304 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1363
E++ ++ +G+ ++ RH+ LL D+M+ KG ++ ITR GI + LM SFE+T D
Sbjct: 1338 MSEIDMIMTSHGMSIDIRHVMLLADLMSFKGEILGITRFGIAKMKESVLMLASFEKTTDH 1397
Query: 1364 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
L DAA H D + GVSE IIMG + +GTG F LL + K
Sbjct: 1398 LFDAAVHHRQDDIVGVSECIIMGVVIPLGTGLFKLLRKSNK 1438
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 66/107 (61%)
Query: 781 SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 840
+ R ++ E++ ++ +G+ ++ RH+ LL D+M+ KG ++ ITR GI + LM SF
Sbjct: 1332 TARNTIMSEIDMIMTSHGMSIDIRHVMLLADLMSFKGEILGITRFGIAKMKESVLMLASF 1391
Query: 841 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 887
E+T D L DAA H D + GVSE IIMG + +GTG F LL + K
Sbjct: 1392 EKTTDHLFDAAVHHRQDDIVGVSECIIMGVVIPLGTGLFKLLRKSNK 1438
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++ E++ ++ +G+ ++ RH+ LL D+M+ KG ++ ITR GI + LM SFE+T
Sbjct: 1336 TIMSEIDMIMTSHGMSIDIRHVMLLADLMSFKGEILGITRFGIAKMKESVLMLASFEKTT 1395
Query: 576 DVLMDAAAHAEADPMRG 592
D L DAA H D + G
Sbjct: 1396 DHLFDAAVHHRQDDIVG 1412
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QRRL+KA+E + HYD TVR+S+G ++Q YG+DGL
Sbjct: 857 GYMQRRLMKALEDLSTHYDYTVRDSIGGIVQFIYGDDGL 895
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 29 YEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQE 73
Y++ I+ MDP RP+ +++T + VPP+S+RP+V M G + E
Sbjct: 226 YQDIEIMNMDPVIGRPERLILTYMLVPPVSIRPSVPMDGGSGTNE 270
>sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens
GN=POLR3A PE=1 SV=2
Length = 1390
Score = 227 bits (578), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 141/378 (37%), Positives = 202/378 (53%), Gaps = 48/378 (12%)
Query: 88 KMPQPCILKPKPLWTGKQVFSLII-PGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVE 146
++P P ILKP LWTGKQ+FS+I+ P + N R + + G + + D+ V ++
Sbjct: 582 RLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQ 641
Query: 147 HGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGD 206
+ L+ G + K +LG+ S + + FY ++ +W E
Sbjct: 642 NSELMSGSMDKGTLGSGSKNNI--------------FY----ILLRDWGQNEA------- 676
Query: 207 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMA 266
AD + L + + G SIGIGD + Q L+ +
Sbjct: 677 --ADAMSRLARLAPVYLSNR------------------GFSIGIGD-VTPGQGLLKAKYE 715
Query: 267 IKKAK-EDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 325
+ A + E I+ + L+ PG T +T E + + L+ RD G + + L + N
Sbjct: 716 LLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSN 775
Query: 326 NLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 385
+ M + GSKGS INISQ+IACVGQQ + G R+P GF R+LPHF K P ++GFV
Sbjct: 776 SPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVA 835
Query: 386 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVG 445
NS+ +GLTP+EFFFH M GREGL+DTAVKTAETGY+QRRL+K++E + YD TVR+S G
Sbjct: 836 NSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTG 895
Query: 446 QLIQLRYGEDGLCGEAVE 463
+IQ YG DGL A+E
Sbjct: 896 DIIQFIYGGDGLDPAAME 913
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 60/76 (78%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+IACVGQQ + G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M
Sbjct: 793 SQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTM 852
Query: 1069 GGREGLIDTAVKTAET 1084
GREGL+DTAVKTAET
Sbjct: 853 AGREGLVDTAVKTAET 868
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1218 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1277
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1278 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1337
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1338 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1397
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1398 LLLDAEK 1404
LL A++
Sbjct: 1362 LLHKADR 1368
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 67/113 (59%)
Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
K + + + R ++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ +
Sbjct: 1256 KTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESV 1315
Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 887
LM SFE+T D L DAA + D + GVSE IIMG +GTG F LL A++
Sbjct: 1316 LMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADR 1368
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
T++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ + LM SFE+T
Sbjct: 1265 TTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKT 1324
Query: 575 VDVLMDAAAHAEADPMRG 592
D L DAA + D + G
Sbjct: 1325 ADHLFDAAYFGQKDSVCG 1342
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE 636
GY+QRRL+K++E + YD TVR+S G +IQ YG DGL A+E
Sbjct: 869 GYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 28 PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVV 64
P E+ +L M+P+ +P +++T L VPPL +RP+VV
Sbjct: 231 PAEDVPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVV 267
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 1495 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTA 1534
T ++TP+N P++ +QD LT +T +D F D+ A
Sbjct: 525 TKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKA 564
>sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/378 (37%), Positives = 202/378 (53%), Gaps = 48/378 (12%)
Query: 88 KMPQPCILKPKPLWTGKQVFSLII-PGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVE 146
++P P ILKP LWTGKQ+FS+I+ P + N R + + G + + D+ V ++
Sbjct: 582 RLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGRGEDLCVNDSYVTIQ 641
Query: 147 HGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGD 206
+ L+ G + K +LG+ S + + FY ++ +W E
Sbjct: 642 NSELMSGSMDKGTLGSGSKNNI--------------FY----ILLRDWGQNEA------- 676
Query: 207 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMA 266
AD + L + + G SIGIGD + Q L+ +
Sbjct: 677 --ADAMSRLARLAPVYLSNR------------------GFSIGIGD-VTPGQGLLKAKYE 715
Query: 267 IKKAK-EDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 325
+ A + E I+ + L+ PG T +T E + + L+ RD G + + L + N
Sbjct: 716 LLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSN 775
Query: 326 NLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 385
+ M + GSKGS INISQ+IACVGQQ + G R+P GF R+LPHF K P ++GFV
Sbjct: 776 SPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVA 835
Query: 386 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVG 445
NS+ +GLTP+EFFFH M GREGL+DTAVKTAETGY+QRRL+K++E + YD TVR+S G
Sbjct: 836 NSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTG 895
Query: 446 QLIQLRYGEDGLCGEAVE 463
+IQ YG DGL A+E
Sbjct: 896 DIIQFIYGGDGLDPAAME 913
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 60/76 (78%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+IACVGQQ + G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M
Sbjct: 793 SQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTM 852
Query: 1069 GGREGLIDTAVKTAET 1084
GREGL+DTAVKTAET
Sbjct: 853 AGREGLVDTAVKTAET 868
Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 14/187 (7%)
Query: 1218 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1277
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1278 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1337
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1338 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1397
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1398 LLLDAEK 1404
LL A +
Sbjct: 1362 LLHKANR 1368
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 66/113 (58%)
Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
K + + + R ++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ +
Sbjct: 1256 KTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESV 1315
Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 887
LM SFE+T D L DAA + D + GVSE IIMG +GTG F LL A +
Sbjct: 1316 LMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANR 1368
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
T++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ + LM SFE+T
Sbjct: 1265 TTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKT 1324
Query: 575 VDVLMDAAAHAEADPMRG 592
D L DAA + D + G
Sbjct: 1325 ADHLFDAAYFGQKDSVCG 1342
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE 636
GY+QRRL+K++E + YD TVR+S G +IQ YG DGL A+E
Sbjct: 869 GYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 28 PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVV 64
P E+ +L M+P+ +P +++T L VPPL +RP+VV
Sbjct: 231 PAEDIPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVV 267
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 1495 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTA 1534
T ++TP+N P++ +QD LT +T +D F D+ A
Sbjct: 525 TKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKA 564
>sp|P11512|RPOA1_SULAC DNA-directed RNA polymerase subunit A' OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoA1 PE=3 SV=2
Length = 880
Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/375 (36%), Positives = 201/375 (53%), Gaps = 55/375 (14%)
Query: 87 GKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQW---ISPGDTKV 143
G++ +P IL PKP +TGKQV SL +P + N H P + GP I P D+ +
Sbjct: 532 GELGEPAILAPKPYYTGKQVISLFLPKDFNF---HG--PANISKGPRACKDEICPHDSFI 586
Query: 144 VVEHGSLLMGILCKKSLGTSSG-SLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSI 202
V+++G LL G+ KK++G S+LH E G E N+ + +L + G ++
Sbjct: 587 VIKNGLLLEGVFDKKAIGNQQPESMLHWSIREYGTEYGKWLMDNVFKMFIRFLEMRGFTM 646
Query: 203 GIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLE 262
+ D I + +A N E
Sbjct: 647 TLED----------------------ITIPDEAQN------------------------E 660
Query: 263 IQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLT 322
I IK+ V E I+K + LEP PG T+ ++ E+ + L+ R G A K L
Sbjct: 661 ITTKIKEGYSQVDEYIRKFNEGQLEPIPGRTIEESLESYILDTLDKLRKVAGEIATKYLD 720
Query: 323 EYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRG 382
+NN+ M + G++GS +NI+Q+ A +GQQ+V G+RI G+R+RTL F D PE+RG
Sbjct: 721 PFNNVYIMAITGARGSELNITQMTALLGQQSVRGERIRRGYRERTLSLFKYGDIAPEARG 780
Query: 383 FVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRN 442
FV+NS++ GL+P E FFHA GGREGL+DTAVKT+++GY+QRRLI A+ + + YD TVR+
Sbjct: 781 FVKNSFMRGLSPYEMFFHAAGGREGLVDTAVKTSQSGYMQRRLINALSDLRIEYDGTVRS 840
Query: 443 SVGQLIQLRYGEDGL 457
G ++Q+ YG+D +
Sbjct: 841 LYGDIVQVVYGDDAV 855
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 66/95 (69%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
Q+ A +GQQ+V G+RI G+R+RTL F D PE+RGFV+NS++ GL+P E FFHA
Sbjct: 741 TQMTALLGQQSVRGERIRRGYRERTLSLFKYGDIAPEARGFVKNSFMRGLSPYEMFFHAA 800
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
GGREGL+DTAVKT+++ + L ++ I YD
Sbjct: 801 GGREGLVDTAVKTSQSGYMQRRLINALSDLRIEYD 835
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 36/47 (76%)
Query: 34 ILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILM 80
+LG DPK +RP+WM++TVLPVPP+++RP++ + R ++ + + L+
Sbjct: 194 LLGYDPKSSRPEWMILTVLPVPPITIRPSITIESGIRAEDDLTHKLV 240
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QRRLI A+ + + YD TVR+ G ++Q+ YG+D +
Sbjct: 817 GYMQRRLINALSDLRIEYDGTVRSLYGDIVQVVYGDDAV 855
>sp|P08968|RPC1_TRYBB DNA-directed RNA polymerase III subunit RPC1 OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 1530
Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 142/388 (36%), Positives = 200/388 (51%), Gaps = 69/388 (17%)
Query: 83 PIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTK 142
P+ ++P P ILKP LWTGKQ+F LI+ + + S P ++ +
Sbjct: 578 PVTQFRLPIPAILKPVELWTGKQLFELIVRPSPEVDVLLSFE------APTKFYTRKGKH 631
Query: 143 VVVEHG-------SLLMGILCKKSLGTSSGSLLHICFLELGHEVCG-----RFYGNIQTV 190
E G + G L KK LG + L F L H + G R I
Sbjct: 632 DCAEEGYVAFLDSCFISGRLDKKLLGGGAKDGL---FARL-HTIAGGGYTARVMSRIAQF 687
Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
+ +L G S+G+GD P+ + + ++ E +I+ A + P PG
Sbjct: 688 TSRYLTNYGFSLGLGDVAPTPELNKQKAAVLARSVEVCDGLIKSAKTGRMIPLPGL---- 743
Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
T++Q+ E ++N L+ R
Sbjct: 744 ------------------------------------------TVKQSLEARLNTELSKVR 761
Query: 311 DKTGGSAKKSLTEYNNLK-AMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLP 369
D+ G +A ++L+ +NN MV +GSKGS +NI+Q++ACVGQQ V GKRI F+ R+LP
Sbjct: 762 DECGTAAVQTLSIHNNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGKRILDAFQDRSLP 821
Query: 370 HFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 429
HF + + P +RGFV NS+ +GL+P+EFFFH M GREGL+DTAVKTAETGYI RRL+KAM
Sbjct: 822 HFHRFEEAPAARGFVANSFYSGLSPTEFFFHTMAGREGLVDTAVKTAETGYIYRRLMKAM 881
Query: 430 ESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
E++ V YD TVRN+ G +IQLR+GEDGL
Sbjct: 882 ENLSVRYDGTVRNTKGDVIQLRFGEDGL 909
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 72/101 (71%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
AQ++ACVGQQ V GKRI F+ R+LPHF + + P +RGFV NS+ +GL+P+EFFFH M
Sbjct: 795 AQMMACVGQQTVSGKRILDAFQDRSLPHFHRFEEAPAARGFVANSFYSGLSPTEFFFHTM 854
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
GREGL+DTAVKTAET + L + N ++ YD +NT
Sbjct: 855 AGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYDGTVRNT 895
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 83/145 (57%)
Query: 1263 TDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRH 1322
+G L V++ VD R N + + +VLGIEA R+ + E+ +L+ Y L ++ RH
Sbjct: 1348 AEGAELRAVMNLWGVDSTRVVCNHVAVVERVLGIEAARRVIVDEIQNILKAYSLSIDVRH 1407
Query: 1323 LALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSEN 1382
+ LL D+MT +G ++ ITR+GI + + L SFE T D L +AAA D VS++
Sbjct: 1408 VYLLADLMTQRGVVLGITRYGIQKMNFNVLTMASFERTTDHLYNAAATQRVDRDLSVSDS 1467
Query: 1383 IIMGQLPRMGTGCFDLLLDAEKCKD 1407
II+G+ +GT FDLLLD D
Sbjct: 1468 IIVGKPVPLGTTSFDLLLDGSISND 1492
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 77/134 (57%), Gaps = 7/134 (5%)
Query: 764 LWGNENLRFLC-------KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 816
LWG ++ R +C +++ + + R+ + E+ +L+ Y L ++ RH+ LL D+MT +
Sbjct: 1359 LWGVDSTRVVCNHVAVVERVLGIEAARRVIVDEIQNILKAYSLSIDVRHVYLLADLMTQR 1418
Query: 817 GHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGT 876
G ++ ITR+GI + + L SFE T D L +AAA D VS++II+G+ +GT
Sbjct: 1419 GVVLGITRYGIQKMNFNVLTMASFERTTDHLYNAAATQRVDRDLSVSDSIIVGKPVPLGT 1478
Query: 877 GCFDLLLDAEKCKD 890
FDLLLD D
Sbjct: 1479 TSFDLLLDGSISND 1492
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 33/39 (84%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GYI RRL+KAME++ V YD TVRN+ G +IQLR+GEDGL
Sbjct: 871 GYIYRRLMKAMENLSVRYDGTVRNTKGDVIQLRFGEDGL 909
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 520 EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 579
E+ +L+ Y L ++ RH+ LL D+MT +G ++ ITR+GI + + L SFE T D L
Sbjct: 1391 EIQNILKAYSLSIDVRHVYLLADLMTQRGVVLGITRYGIQKMNFNVLTMASFERTTDHLY 1450
Query: 580 DAAAHAEAD 588
+AAA D
Sbjct: 1451 NAAATQRVD 1459
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 1495 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
T R II+ +N P++ QD L A +T RDVF D+
Sbjct: 529 TARNIISAKNGEPIIACTQDFLAAAYLVTSRDVFFDR 565
>sp|Q5ZL98|RPC1_CHICK DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 142/378 (37%), Positives = 202/378 (53%), Gaps = 48/378 (12%)
Query: 88 KMPQPCILKPKPLWTGKQVFSLII-PGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVE 146
++P P ILKP LWTGKQVFS I+ P + + + + G + + D+ V ++
Sbjct: 582 RLPPPAILKPVTLWTGKQVFSSILKPSDDCPVKANLRTKGKQYCGKGEDLCYNDSYVTIQ 641
Query: 147 HGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGD 206
+ L+ G + K +LG SGS +I ++ L R +G ++
Sbjct: 642 NSELMSGSMDKGTLG--SGSKNNIFYILL------RDWGQVEA----------------- 676
Query: 207 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMA 266
AD + L + + G SIGIGD + Q L+ +
Sbjct: 677 --ADAMSRLARLAPVYLSNR------------------GFSIGIGD-VTPGQGLLKAKYE 715
Query: 267 IKKAK-EDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYN 325
+ A + E I+ + L+ PG T +T E + + L+ RD G + + L + N
Sbjct: 716 LLHAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSN 775
Query: 326 NLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 385
+ M + GSKGS INISQ+IACVGQQ + G R+P GF R+LPHF K P ++GFV
Sbjct: 776 SPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVA 835
Query: 386 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVG 445
NS+ +GLTP+EFFFH M GREGL+DTAVKTAETGY+QRRL+K++E + YD TVR+S G
Sbjct: 836 NSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTG 895
Query: 446 QLIQLRYGEDGLCGEAVE 463
+IQ YG DGL A+E
Sbjct: 896 DIIQFIYGGDGLDPAAME 913
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 60/76 (78%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+IACVGQQ + G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M
Sbjct: 793 SQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTM 852
Query: 1069 GGREGLIDTAVKTAET 1084
GREGL+DTAVKTAET
Sbjct: 853 AGREGLVDTAVKTAET 868
Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1218 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1277
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1278 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1337
+T SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1338 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1397
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1398 LLLDAEK 1404
LL A+K
Sbjct: 1362 LLHKADK 1368
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 67/113 (59%)
Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
K + + + R ++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ +
Sbjct: 1256 KTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESV 1315
Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 887
LM SFE+T D L DAA + D + GVSE IIMG +GTG F LL A+K
Sbjct: 1316 LMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADK 1368
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
T++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ + LM SFE+T
Sbjct: 1265 TTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKT 1324
Query: 575 VDVLMDAAAHAEADPMRG 592
D L DAA + D + G
Sbjct: 1325 ADHLFDAAYFGQKDSVCG 1342
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE 636
GY+QRRL+K++E + YD TVR+S G +IQ YG DGL A+E
Sbjct: 869 GYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 28 PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVV 64
P E+ +L M+P+ +P +++T L VPPL +RP+VV
Sbjct: 231 PAEDIPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVV 267
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 1495 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTA 1534
T ++TP+N P++ +QD LT +T +D F D+ A
Sbjct: 525 TKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKA 564
>sp|Q6BI69|RPC1_DEBHA DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=RPC1 PE=3 SV=2
Length = 1457
Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/376 (35%), Positives = 192/376 (51%), Gaps = 54/376 (14%)
Query: 89 MPQPCILKPKPLWTGKQVFSLIIPGN------VNMTRTHSTHPDDEDSGPYQWISPGDTK 142
+P P I KP LWTGKQVFSL+I N +N+ + T+ P + +SP D
Sbjct: 589 IPPPAIFKPVMLWTGKQVFSLLIKPNKKSNVVINLDAKNKTYTPPAKGFPNE-MSPNDGF 647
Query: 143 VVVEHGSLLMGILCKKSLGTSSG-SLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHS 201
V++ +L G++ K +LG S+ + + G + + + +L G S
Sbjct: 648 VIIRGSQILSGVMDKSTLGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARYLGNRGFS 707
Query: 202 IGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYL 261
IGI D I +K+ KE ++E Q YL
Sbjct: 708 IGINDVIPGSD--------LKQKKELMVE---------------------------QAYL 732
Query: 262 EIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSL 321
+ E+I + +LE PG QT E ++ +L+ R++ G L
Sbjct: 733 KCD-----------ELIDLYNRGNLETQPGCNEEQTLEAKIGGLLSKVREEVGEICINEL 781
Query: 322 TEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESR 381
N M GSKGS +N+SQ++A VGQQ + G R+P GF+ R+LPHF K+ P+S+
Sbjct: 782 DSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKNSKTPQSK 841
Query: 382 GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVR 441
GFV NS+ +GLTP EF FH++ GREGL+DTAVKTAETGY+ RRL+K+++ + YD TVR
Sbjct: 842 GFVRNSFFSGLTPPEFLFHSISGREGLVDTAVKTAETGYMSRRLMKSLDDLSAQYDHTVR 901
Query: 442 NSVGQLIQLRYGEDGL 457
NS ++Q YG DGL
Sbjct: 902 NSSNGIVQFTYGGDGL 917
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 92/151 (60%)
Query: 1261 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1320
L +G L +V+S V +T +N I E+FQVLGIEA R S+ E++ + +G+ V+
Sbjct: 1292 LLVEGYGLKEVMSTDGVVGTKTSTNHILEVFQVLGIEAARASIIGEIDYTMSKHGMSVDP 1351
Query: 1321 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1380
RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DA+ + + D + GVS
Sbjct: 1352 RHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMKNDKIEGVS 1411
Query: 1381 ENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI 1411
E II+GQ +GTG F L+ + K +E+
Sbjct: 1412 ECIILGQTMNIGTGAFKLVNSFDVDKKALEM 1442
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 71/101 (70%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q++A VGQQ + G R+P GF+ R+LPHF K+ P+S+GFV NS+ +GLTP EF FH++
Sbjct: 803 SQMVAVVGQQIISGNRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLTPPEFLFHSI 862
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNT 1109
GREGL+DTAVKTAET + L + + + YD +N+
Sbjct: 863 SGREGLVDTAVKTAETGYMSRRLMKSLDDLSAQYDHTVRNS 903
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 73/120 (60%)
Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
+++ + + R S+ E++ + +G+ V+ RH+ LL DVMT KG ++ ITR G+++
Sbjct: 1323 QVLGIEAARASIIGEIDYTMSKHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSV 1382
Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI 894
L SFE+T D L DA+ + + D + GVSE II+GQ +GTG F L+ + K +E+
Sbjct: 1383 LQLASFEKTTDHLFDASFYMKNDKIEGVSECIILGQTMNIGTGAFKLVNSFDVDKKALEM 1442
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
S+ E++ + +G+ V+ RH+ LL DVMT KG ++ ITR G+++ L SFE+T
Sbjct: 1332 ASIIGEIDYTMSKHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKT 1391
Query: 575 VDVLMDAAAHAEADPMRG 592
D L DA+ + + D + G
Sbjct: 1392 TDHLFDASFYMKNDKIEG 1409
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+ RRL+K+++ + YD TVRNS ++Q YG DGL
Sbjct: 879 GYMSRRLMKSLDDLSAQYDHTVRNSSNGIVQFTYGGDGL 917
>sp|Q58445|RPOA1_METJA DNA-directed RNA polymerase subunit A' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoA1 PE=3 SV=2
Length = 1341
Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 204/383 (53%), Gaps = 55/383 (14%)
Query: 99 PLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKK 158
PL++GK++FS +P +N+ R + D + D VV++ G L+ G++ K
Sbjct: 1005 PLYSGKKIFSKALPKGLNL-RYKAKICRKCDVCKKEECEY-DAYVVIKDGELIKGVIDKN 1062
Query: 159 SLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQ 218
G +G +LH E G E +F D T + I+
Sbjct: 1063 GYGAEAGLILHTIVKEFGPEAGRKF-------------------------LDSATKMAIR 1097
Query: 219 MAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVI 278
+ + G + GI D + EI+ + +A+E V E+I
Sbjct: 1098 AVMLR---------------------GFTTGIDDEDLPEEALKEIEKVLDEAEEKVKEII 1136
Query: 279 QKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGS 338
+K +LE PG L ++ E ++ +L +ARDK G A++ L N+ M V G++G+
Sbjct: 1137 EKYERGELELLPGLNLEESREAYISNVLREARDKAGAIAERYLGLDNHAVIMAVTGARGN 1196
Query: 339 NINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 398
+N++Q+ AC+GQQ+V GKRI G+R R LPHF K D G S GFV +SY GL+P+EFF
Sbjct: 1197 ILNLTQMAACLGQQSVRGKRIFRGYRGRVLPHFEKGDLGARSHGFVRSSYKKGLSPTEFF 1256
Query: 399 FHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL- 457
FHAMGGREGL+D AV+TA++GY+QRRLI A++ + +D TVR+S G +IQ +YGEDG+
Sbjct: 1257 FHAMGGREGLVDQAVRTAQSGYMQRRLINALQDLKTEFDGTVRDSRGIMIQFKYGEDGID 1316
Query: 458 -----CGEAVEHQR-IDTVALSH 474
G+AV R ID V + +
Sbjct: 1317 PMLADRGKAVNIDRIIDKVKMKY 1339
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 62/87 (71%)
Query: 998 LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
+ G N Q+ AC+GQQ+V GKRI G+R R LPHF K D G S GFV +SY G
Sbjct: 1190 VTGARGNILNLTQMAACLGQQSVRGKRIFRGYRGRVLPHFEKGDLGARSHGFVRSSYKKG 1249
Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAET 1084
L+P+EFFFHAMGGREGL+D AV+TA++
Sbjct: 1250 LSPTEFFFHAMGGREGLVDQAVRTAQS 1276
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 42/53 (79%)
Query: 28 PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILM 80
P E+ I+LG++P+ ARP+WM++TVLPVPP++VRP++ + R+++ + + L+
Sbjct: 191 PDEDCILLGLNPEVARPEWMVLTVLPVPPVTVRPSITLETGERSEDDLTHKLV 243
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 7/63 (11%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL------CGEAVEHQR-IDTVA 644
GY+QRRLI A++ + +D TVR+S G +IQ +YGEDG+ G+AV R ID V
Sbjct: 1277 GYMQRRLINALQDLKTEFDGTVRDSRGIMIQFKYGEDGIDPMLADRGKAVNIDRIIDKVK 1336
Query: 645 LSH 647
+ +
Sbjct: 1337 MKY 1339
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III subunit RPC1 OS=Plasmodium falciparum
PE=3 SV=1
Length = 2339
Score = 221 bits (563), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 140/374 (37%), Positives = 198/374 (52%), Gaps = 50/374 (13%)
Query: 88 KMPQPCILKPKPLWTGKQVFSLII-PGNVNMTRTHSTHPDDEDS---GPYQWISPGDTKV 143
++P P ILKPK LWTGKQ+ S++I P T + + E S G + + D+ V
Sbjct: 691 ELPIPAILKPKELWTGKQLISVLIKPNKKENTIINFEIQEREYSNKFGDLKHLCLNDSYV 750
Query: 144 VVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIG 203
L+ G L KK LG+S L + + + + + + + +G +IG
Sbjct: 751 CFYKSELICGSLGKKVLGSSKYGLFYYLIHHNSSHIALKIMNRLSKLTSRYFSNKGMTIG 810
Query: 204 IGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEI 263
I D + QT E K K+ +++ +K +N + Y E
Sbjct: 811 IDD-VRPSQTLTE------KKKDLLLKGYEKVNN------------------EIILYNEK 845
Query: 264 QMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTE 323
+M I+ PG TL +T E +V IL+D R+ G + + L
Sbjct: 846 KMQIQ---------------------PGCTLEETLEIKVKSILDDLRNDAGKTCNQYLHY 884
Query: 324 YNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF 383
N M +G+KG+ INI+Q+IACVGQQNV G+RI GF RTLPHF ESRGF
Sbjct: 885 LNKPLIMFNSGAKGALINIAQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDSESRGF 944
Query: 384 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNS 443
V+NS+ GL+P+EFFFH M GREGL+DTAVKTAETGY+QRRL+KA+E + +HYD +VR+
Sbjct: 945 VQNSFYTGLSPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVRSC 1004
Query: 444 VGQLIQLRYGEDGL 457
Q++Q YG+D L
Sbjct: 1005 DKQIVQFIYGDDAL 1018
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 80/124 (64%), Gaps = 4/124 (3%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
AQ+IACVGQQNV G+RI GF RTLPHF ESRGFV+NS+ GL+P+EFFFH M
Sbjct: 904 AQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEFFFHTM 963
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
GREGL+DTAVKTAET + L + + +I+YD +V D++ V Y +
Sbjct: 964 SGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDY----SVRSCDKQIVQFIYGDDALN 1019
Query: 1129 PTRI 1132
P+ I
Sbjct: 1020 PSYI 1023
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 77/138 (55%)
Query: 1264 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1323
+G SL VL VD SN + +FQVLGIEA R ++ E+ ++ Y + ++ RH+
Sbjct: 2178 EGNSLNYVLGLEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSIDIDIRHI 2237
Query: 1324 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1383
LL D+M G ++ I R GI + LM SFEET + L ++ D + +SE+I
Sbjct: 2238 MLLADIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDEINNISESI 2297
Query: 1384 IMGQLPRMGTGCFDLLLD 1401
I+G+ +GTG F LL D
Sbjct: 2298 IVGKNIPIGTGAFQLLYD 2315
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 62/110 (56%)
Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
+++ + + R ++ E+ ++ Y + ++ RH+ LL D+M G ++ I R GI +
Sbjct: 2206 QVLGIEAARITIINEIKKCVEAYSIDIDIRHIMLLADIMAFTGDILGINRFGIQKARQST 2265
Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
LM SFEET + L ++ D + +SE+II+G+ +GTG F LL D
Sbjct: 2266 LMLASFEETNEHLFVSSFFKNVDEINNISESIIVGKNIPIGTGAFQLLYD 2315
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QRRL+KA+E + +HYD +VR+ Q++Q YG+D L
Sbjct: 980 GYMQRRLMKALEDLSIHYDYSVRSCDKQIVQFIYGDDAL 1018
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 520 EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 579
E+ ++ Y + ++ RH+ LL D+M G ++ I R GI + LM SFEET + L
Sbjct: 2220 EIKKCVEAYSIDIDIRHIMLLADIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLF 2279
Query: 580 DAAAHAEADPMRG 592
++ D +
Sbjct: 2280 VSSFFKNVDEINN 2292
>sp|Q980R2|RPOA1_SULSO DNA-directed RNA polymerase subunit A' OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoA1
PE=1 SV=1
Length = 880
Score = 218 bits (554), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 135/387 (34%), Positives = 200/387 (51%), Gaps = 61/387 (15%)
Query: 91 QPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWIS---PGDTKVVVEH 147
+P IL P+ +TGKQV S +P + N + SGP + P D+ VV+++
Sbjct: 536 EPAILAPREYYTGKQVISAFLPKDFNFHGQANV-----SSGPRLCKNEDCPHDSYVVIKN 590
Query: 148 GSLLMGILCKKSLGTSSG-SLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGD 206
G LL G+ KK++G S+LH E E N+ V ++ L+G ++ + D
Sbjct: 591 GILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRLED 650
Query: 207 TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMA 266
+ +GD + EI
Sbjct: 651 -----------------------------------------VSLGDDVKK-----EIYNE 664
Query: 267 IKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNN 326
I +AK +V +IQK N +LEP PG TL ++ EN + L+ R G A K L +N
Sbjct: 665 IDRAKVEVDNLIQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTAGDIASKYLDPFNF 724
Query: 327 LKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVEN 386
M G++GS +NI+Q+ A +GQQ+V G+RI G+ RTLPHF D PE+RGF+ +
Sbjct: 725 AYVMARTGARGSVLNITQMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYS 784
Query: 387 SYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQ 446
S+ GL P+E FFHA GGREGL+DTAV+T+++GY+QRRLI A+ + YD TVR+ G+
Sbjct: 785 SFRTGLKPTELFFHAAGGREGLVDTAVRTSQSGYMQRRLINALSDLRAEYDGTVRSLYGE 844
Query: 447 LIQLRYGEDGLC------GEAVEHQRI 467
++Q+ YG+DG+ G+ V+ RI
Sbjct: 845 VVQVAYGDDGVFPMYSAHGKTVDVNRI 871
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 63/94 (67%)
Query: 1010 QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 1069
Q+ A +GQQ+V G+RI G+ RTLPHF D PE+RGF+ +S+ GL P+E FFHA G
Sbjct: 742 QMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAG 801
Query: 1070 GREGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
GREGL+DTAV+T+++ + L ++ YD
Sbjct: 802 GREGLVDTAVRTSQSGYMQRRLINALSDLRAEYD 835
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 36/47 (76%)
Query: 34 ILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILM 80
ILG DP +RP+WM++TVLPVPP+++RP++++ R ++ + + L+
Sbjct: 194 ILGYDPTTSRPEWMILTVLPVPPITIRPSIMIESGIRAEDDLTHKLV 240
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 6/55 (10%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLC------GEAVEHQRI 640
GY+QRRLI A+ + YD TVR+ G+++Q+ YG+DG+ G+ V+ RI
Sbjct: 817 GYMQRRLINALSDLRAEYDGTVRSLYGEVVQVAYGDDGVFPMYSAHGKTVDVNRI 871
>sp|P31813|RPOA1_THECE DNA-directed RNA polymerase subunit A' OS=Thermococcus celer
GN=rpoA1 PE=3 SV=1
Length = 905
Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 137/410 (33%), Positives = 207/410 (50%), Gaps = 69/410 (16%)
Query: 67 GSARNQEQMMNILMFLPIWDGKMPQP-CILKPKPLWTGKQVFSLIIPGNVNM-------- 117
G+ + ++ +LMF + ++P+P + LW+GK +FSL++P ++ +
Sbjct: 518 GAYFERTEVEQMLMFAGVDVDRLPEPDKVENGVELWSGKTIFSLLLPKDLTIWYRNKLCD 577
Query: 118 --TRTHSTH--------PDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSL 167
R + PD+E+ + D + +G LL G + K + G G L
Sbjct: 578 EPGRCEALEKLIEEKLIPDEEEVRALAY----DGFTYILNGKLLSGAIDKTAYGREDGKL 633
Query: 168 LHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKED 227
L I E G E +F D T L I + K
Sbjct: 634 LDIIVREYGVERARQFL-------------------------DQVTKLAIWVITHK---- 664
Query: 228 VIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLE 287
G + I D + I+ I++A+E V +I+ N +LE
Sbjct: 665 -----------------GFTTAIDDEDLPTEALDRIREIIREAEERVNRLIEAYRNGELE 707
Query: 288 PTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIA 347
P PG TL +T E+++ L +ARD G A++ L N+ M G++G +NI+Q+ A
Sbjct: 708 PIPGKTLEETLESKIMAALAEARDNAGKVAERYLGMSNHAVIMAKTGARGKILNITQMAA 767
Query: 348 CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREG 407
+GQQ++ GKR+ G+R+R L HF D G +RGFV NSY +GLTP E+FFHAMGGREG
Sbjct: 768 MLGQQSIRGKRLYRGYRERVLTHFKPGDLGARARGFVINSYKSGLTPQEYFFHAMGGREG 827
Query: 408 LIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
L+DTAV+TA++GY+QRRLI A++ + V YD TVR+ G ++Q RYGEDG+
Sbjct: 828 LVDTAVRTAQSGYMQRRLINALQDLKVEYDGTVRDPTGIIVQFRYGEDGI 877
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 69/105 (65%), Gaps = 3/105 (2%)
Query: 1010 QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 1069
Q+ A +GQQ++ GKR+ G+R+R L HF D G +RGFV NSY +GLTP E+FFHAMG
Sbjct: 764 QMAAMLGQQSIRGKRLYRGYRERVLTHFKPGDLGARARGFVINSYKSGLTPQEYFFHAMG 823
Query: 1070 GREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDP---DPQNTVI 1111
GREGL+DTAV+TA++ + L + + YD DP ++
Sbjct: 824 GREGLVDTAVRTAQSGYMQRRLINALQDLKVEYDGTVRDPTGIIV 868
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QRRLI A++ + V YD TVR+ G ++Q RYGEDG+
Sbjct: 839 GYMQRRLINALQDLKVEYDGTVRDPTGIIVQFRYGEDGI 877
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 36/47 (76%)
Query: 34 ILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILM 80
++G+D + ARP+WM++TVLPVPP+++RP++ + R ++ + + L+
Sbjct: 200 LIGLDAEKARPEWMVLTVLPVPPVTMRPSITLESGIRAEDDLTHKLV 246
>sp|P04051|RPC1_YEAST DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1
SV=1
Length = 1460
Score = 215 bits (547), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 138/389 (35%), Positives = 193/389 (49%), Gaps = 79/389 (20%)
Query: 89 MPQPCILKPKPLWTGKQVFSLIIPGNVNM-------TRTHSTHPDDEDSGPYQWISPGDT 141
+P P I+KP LWTGKQVFSL+I N N + P S P + +S D
Sbjct: 592 IPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPNE-MSQNDG 650
Query: 142 KVVVEHGSLLMGILCKKSLGTSSG-SLLHICFLELGHE-----------VCGRFYGNIQT 189
V++ +L G++ K LG S+ + + G + +C RF GN
Sbjct: 651 FVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGN--- 707
Query: 190 VVNNWLLLEGHSIGIGD-TIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSI 248
G SIGI D T AD +K+ KE+++E+ H D
Sbjct: 708 --------RGFSIGINDVTPADD---------LKQKKEELVEIAY--HKCD--------- 739
Query: 249 GIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILND 308
E+I + +LE PG QT E ++ +L+
Sbjct: 740 ---------------------------ELITLFNKGELETQPGCNEEQTLEAKIGGLLSK 772
Query: 309 ARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTL 368
R++ G L +N M GSKGS +N+SQ++A VGQQ + G R+P GF+ R+L
Sbjct: 773 VREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSL 832
Query: 369 PHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKA 428
PHF K+ P+S+GFV NS+ +GL+P EF FHA+ GREGL+DTAVKTAETGY+ RRL+K+
Sbjct: 833 PHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKS 892
Query: 429 MESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
+E + YD TVR S ++Q YG DGL
Sbjct: 893 LEDLSCQYDNTVRTSANGIVQFTYGGDGL 921
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 112/201 (55%), Gaps = 18/201 (8%)
Query: 1200 AVDKMEDDMFLRCIE-ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1258
A + E+D+F R + L D+ ++G+ I + +++ + D K+ +++
Sbjct: 1248 AKEPSENDVFYRMQQLRRALPDVVVKGLPDISRAVINI-RDDGKRELLV----------- 1295
Query: 1259 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1318
+G L V+ V RT +N + E+F VLGIEA R S+ +E+N + +G+ V
Sbjct: 1296 -----EGYGLRDVMCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSV 1350
Query: 1319 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1378
+ RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DAA + + D + G
Sbjct: 1351 DPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEG 1410
Query: 1379 VSENIIMGQLPRMGTGCFDLL 1399
VSE II+GQ +GTG F ++
Sbjct: 1411 VSECIILGQTMSIGTGSFKVV 1431
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 94/184 (51%), Gaps = 13/184 (7%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q++A VGQQ + G R+P GF+ R+LPHF K+ P+S+GFV NS+ +GL+P EF FHA+
Sbjct: 807 SQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAI 866
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
GREGL+DTAVKTAET + L + + + YD NTV V Y D
Sbjct: 867 SGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYD----NTVRTSANGIVQFTYGGDGLD 922
Query: 1129 PTRISPWLLRIELDRK---------RMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
P + + +R DK L AI E N G + DN+
Sbjct: 923 PLEMEGNAQPVNFNRSWDHAYNITFNNQDKGLLPYAIMETANEILGPLEERLVRYDNSGC 982
Query: 1180 LVLR 1183
LV R
Sbjct: 983 LVKR 986
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 68/107 (63%)
Query: 776 IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
++ + + R S+ +E+N + +G+ V+ RH+ LL DVMT KG ++ ITR G+++ L
Sbjct: 1325 VLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVL 1384
Query: 836 MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 882
SFE+T D L DAA + + D + GVSE II+GQ +GTG F ++
Sbjct: 1385 QLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKVV 1431
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
S+ +E+N + +G+ V+ RH+ LL DVMT KG ++ ITR G+++ L SFE+T
Sbjct: 1334 SIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTT 1393
Query: 576 DVLMDAAAHAEADPMRG 592
D L DAA + + D + G
Sbjct: 1394 DHLFDAAFYMKKDAVEG 1410
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+ RRL+K++E + YD TVR S ++Q YG DGL
Sbjct: 883 GYMSRRLMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGL 921
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 34 ILGMDPKF--ARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFLPIWDGKM 89
+LG+D RP+ + LP PP+ +RP+V+M S + E + + + +W +
Sbjct: 241 LLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSL 298
>sp|P0CX02|RPOA1_HALSA DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoA1 PE=3
SV=1
Length = 971
Score = 214 bits (545), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 128/356 (35%), Positives = 182/356 (51%), Gaps = 62/356 (17%)
Query: 101 WTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSL 160
WTG Q+FS ++P ++++ T +T GDT VV+E G LL G + +
Sbjct: 618 WTGHQIFSELLPDDLSLEFTGTT---------------GDT-VVIEDGQLLEGTIADDEV 661
Query: 161 GTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMA 220
G E G E+ DTI ++
Sbjct: 662 G------------EYGSEIV-------------------------DTITKVHGNTRARIF 684
Query: 221 IKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQK 280
I + + I G SIGI D + I AI+ A + V E+I+
Sbjct: 685 INEVASLAMRSIMHF---------GFSIGIDDETVSTEARERIDEAIQSAYDRVQELIET 735
Query: 281 AHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNI 340
N DLE PG T+ +T E ++ + L ARD G A+++ E N M +G++GS +
Sbjct: 736 YENGDLESLPGRTVDETLEMKIMQTLGKARDSAGDVAEENFDEDNPAVVMANSGARGSML 795
Query: 341 NISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFH 400
N++Q+ CVGQQ V G+RI G+ RTL HF +D E+ GFVENSY +GLTP EFFFH
Sbjct: 796 NLTQMAGCVGQQAVRGERINRGYEDRTLSHFAPNDLSSEAHGFVENSYTSGLTPKEFFFH 855
Query: 401 AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDG 456
AMGGREGL+DTAV+T+++GY+QRRLI A+ + YD TVR++ ++Q +GEDG
Sbjct: 856 AMGGREGLVDTAVRTSKSGYLQRRLINALSELETQYDGTVRDTSDTIVQFEFGEDG 911
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 85/155 (54%), Gaps = 5/155 (3%)
Query: 1010 QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 1069
Q+ CVGQQ V G+RI G+ RTL HF +D E+ GFVENSY +GLTP EFFFHAMG
Sbjct: 799 QMAGCVGQQAVRGERINRGYEDRTLSHFAPNDLSSEAHGFVENSYTSGLTPKEFFFHAMG 858
Query: 1070 GREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDP 1129
GREGL+DTAV+T+++ + L + YD TV V + P
Sbjct: 859 GREGLVDTAVRTSKSGYLQRRLINALSELETQYD----GTVRDTSDTIVQFEFGEDGTSP 914
Query: 1130 TRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
++S +++D + + D+ L E S+ A F
Sbjct: 915 VQVSSN-EEVDIDVEHVADRILNSEFDSDTQKAEF 948
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 12 NHVSNTSVYAWYVVPYPYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARN 71
N + + + W+ P E+ LG++ +RP+WM++TVLPVPP++ RP++ + R+
Sbjct: 245 NKLMPSDIRDWFE-DIPGEDLEALGVNSDRSRPEWMILTVLPVPPVTARPSITLDNGQRS 303
Query: 72 QEQMMNILM 80
++ + + L+
Sbjct: 304 EDDLTHKLV 312
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDG 629
GY+QRRLI A+ + YD TVR++ ++Q +GEDG
Sbjct: 874 GYLQRRLINALSELETQYDGTVRDTSDTIVQFEFGEDG 911
>sp|B0R8D4|RPOA1_HALS3 DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoA1 PE=1 SV=1
Length = 971
Score = 214 bits (545), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 128/356 (35%), Positives = 182/356 (51%), Gaps = 62/356 (17%)
Query: 101 WTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSL 160
WTG Q+FS ++P ++++ T +T GDT VV+E G LL G + +
Sbjct: 618 WTGHQIFSELLPDDLSLEFTGTT---------------GDT-VVIEDGQLLEGTIADDEV 661
Query: 161 GTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMA 220
G E G E+ DTI ++
Sbjct: 662 G------------EYGSEIV-------------------------DTITKVHGNTRARIF 684
Query: 221 IKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQK 280
I + + I G SIGI D + I AI+ A + V E+I+
Sbjct: 685 INEVASLAMRSIMHF---------GFSIGIDDETVSTEARERIDEAIQSAYDRVQELIET 735
Query: 281 AHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNI 340
N DLE PG T+ +T E ++ + L ARD G A+++ E N M +G++GS +
Sbjct: 736 YENGDLESLPGRTVDETLEMKIMQTLGKARDSAGDVAEENFDEDNPAVVMANSGARGSML 795
Query: 341 NISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFH 400
N++Q+ CVGQQ V G+RI G+ RTL HF +D E+ GFVENSY +GLTP EFFFH
Sbjct: 796 NLTQMAGCVGQQAVRGERINRGYEDRTLSHFAPNDLSSEAHGFVENSYTSGLTPKEFFFH 855
Query: 401 AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDG 456
AMGGREGL+DTAV+T+++GY+QRRLI A+ + YD TVR++ ++Q +GEDG
Sbjct: 856 AMGGREGLVDTAVRTSKSGYLQRRLINALSELETQYDGTVRDTSDTIVQFEFGEDG 911
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 85/155 (54%), Gaps = 5/155 (3%)
Query: 1010 QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 1069
Q+ CVGQQ V G+RI G+ RTL HF +D E+ GFVENSY +GLTP EFFFHAMG
Sbjct: 799 QMAGCVGQQAVRGERINRGYEDRTLSHFAPNDLSSEAHGFVENSYTSGLTPKEFFFHAMG 858
Query: 1070 GREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDP 1129
GREGL+DTAV+T+++ + L + YD TV V + P
Sbjct: 859 GREGLVDTAVRTSKSGYLQRRLINALSELETQYD----GTVRDTSDTIVQFEFGEDGTSP 914
Query: 1130 TRISPWLLRIELDRKRMTDKKLTMEAISEKINAGF 1164
++S +++D + + D+ L E S+ A F
Sbjct: 915 VQVSSN-EEVDIDVEHVADRILNSEFDSDTQKAEF 948
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 12 NHVSNTSVYAWYVVPYPYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARN 71
N + + + W+ P E+ LG++ +RP+WM++TVLPVPP++ RP++ + R+
Sbjct: 245 NKLMPSDIRDWFE-DIPGEDLEALGVNSDRSRPEWMILTVLPVPPVTARPSITLDNGQRS 303
Query: 72 QEQMMNILM 80
++ + + L+
Sbjct: 304 EDDLTHKLV 312
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDG 629
GY+QRRLI A+ + YD TVR++ ++Q +GEDG
Sbjct: 874 GYLQRRLINALSELETQYDGTVRDTSDTIVQFEFGEDG 911
>sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc1 PE=2 SV=1
Length = 1405
Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 140/417 (33%), Positives = 208/417 (49%), Gaps = 86/417 (20%)
Query: 89 MPQPCILKPKPLWTGKQVFSLIIPGN------VNMTRTHSTHPDDEDSGPYQWISPGDTK 142
+P P I+KP+ LWTGKQVF++++ N VN+ + + P + P D
Sbjct: 574 LPPPAIIKPRCLWTGKQVFTVLMKPNRFSKVLVNLDAKTRSFSRIKSKTPE--MCPKDGY 631
Query: 143 VVVEHGSLLMGILCKKSLGTSSG-SLLHICFLELG-----------HEVCGRFYGNIQTV 190
+++ + ++ G++ K +G SL ++ + G ++C RF GN
Sbjct: 632 LMIRNSEIIAGVVDKSVVGDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGN---- 687
Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
G SIGI EDV PG S+
Sbjct: 688 -------RGFSIGI---------------------EDV--------------QPGKSLS- 704
Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
+ ++ + KA + I + LE PG T E +++ L+ R
Sbjct: 705 ----------SQKEILVNKAYATSDDFIMQYAKGILECQPGMDQEATLEAKISSTLSKVR 754
Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
D G L N+ M GSKGS IN+SQ++ACVGQQ + GKR+P GF+ R+LPH
Sbjct: 755 DDVGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPH 814
Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
F K+ P ++GFV NS+ +GLTP+EF FHA+ GREGL+DTAVKTAETGY+ RRL+K++E
Sbjct: 815 FHKNSKHPLAKGFVSNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLE 874
Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGL-------CGEAVEHQR--IDTVALSHKKFE 478
+ YD TVR+S ++Q YG+DGL G+AVE +R I +V L++ + +
Sbjct: 875 DLSSAYDGTVRSSNSDVVQFVYGDDGLDPTYMEGDGQAVEFKRTWIHSVNLNYDRHD 931
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 117/234 (50%), Gaps = 30/234 (12%)
Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
G ++ +Q++ACVGQQ + GKR+P GF+ R+LPHF K+ P ++GFV NS+ +GLT
Sbjct: 778 GSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHFHKNSKHPLAKGFVSNSFYSGLT 837
Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
P+EF FHA+ GREGL+DTAVKTAET + L + + + YD TV + + V
Sbjct: 838 PTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSAYD----GTVRSSNSDVVQ 893
Query: 1120 VYYEMPDFDPTRIS----------PWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD-- 1167
Y DPT + W+ + L+ R L E I + +N D
Sbjct: 894 FVYGDDGLDPTYMEGDGQAVEFKRTWIHSVNLNYDRHDSAMLPYEII-DYVNRALDDPKF 952
Query: 1168 -LNC---------IFNDDNAEKLVLRIRIMNSDDSKMQDEEDA--VDKMEDDMF 1209
NC F +N K + +R D + M +E D +D ME D F
Sbjct: 953 LTNCNRDFIETIRTFVIENIAKYLASVR-ERRDLAPMLEEPDMDDLDDMEGDEF 1005
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 98/183 (53%), Gaps = 18/183 (9%)
Query: 1217 MLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERD 1276
+L D+ + GI I + +I ESG+ + L +GT L V++
Sbjct: 1213 VLPDVVVAGIPTINR------------SVINQESGKIE------LFMEGTGLQAVMNTEG 1254
Query: 1277 VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 1336
+ +T +N + E+ VLGIEA R S+ E+ + +GL V+ RH+ LL DVMT KG +
Sbjct: 1255 IVGTKTSTNHVMEMKDVLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEV 1314
Query: 1337 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1396
+ ITR G+ + L SFE+T D L +AAA D + G+SE I++G+L +GT F
Sbjct: 1315 LGITRFGVAKMKDSVLALASFEKTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVF 1374
Query: 1397 DLL 1399
L+
Sbjct: 1375 QLI 1377
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%)
Query: 776 IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
++ + + R S+ E+ + +GL V+ RH+ LL DVMT KG ++ ITR G+ + L
Sbjct: 1271 VLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGITRFGVAKMKDSVL 1330
Query: 836 MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 882
SFE+T D L +AAA D + G+SE I++G+L +GT F L+
Sbjct: 1331 ALASFEKTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVFQLI 1377
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
S+ E+ + +GL V+ RH+ LL DVMT KG ++ ITR G+ + L SFE+T
Sbjct: 1280 SIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGITRFGVAKMKDSVLALASFEKTT 1339
Query: 576 DVLMDAAAHAEADPMRG 592
D L +AAA D + G
Sbjct: 1340 DHLFNAAARFAKDSIEG 1356
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 9/69 (13%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL-------CGEAVEHQR--IDT 642
GY+ RRL+K++E + YD TVR+S ++Q YG+DGL G+AVE +R I +
Sbjct: 863 GYMSRRLMKSLEDLSSAYDGTVRSSNSDVVQFVYGDDGLDPTYMEGDGQAVEFKRTWIHS 922
Query: 643 VALSHKKFE 651
V L++ + +
Sbjct: 923 VNLNYDRHD 931
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 34 ILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILMFLPIWDGKMPQPC 93
+LGMDP+ RP+ +L +P PP+ +RP+V G+ + + I IW + +
Sbjct: 233 LLGMDPEHGRPENLLWRYVPAPPVCIRPSVAQEGATTEDDLTVKITEI--IWTSSLIRAA 290
Query: 94 ILKPKPL 100
+ K P+
Sbjct: 291 LSKGTPI 297
>sp|O27125|RPOA1_METTH DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoA1 PE=3 SV=1
Length = 870
Score = 209 bits (531), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 118/358 (32%), Positives = 193/358 (53%), Gaps = 49/358 (13%)
Query: 101 WTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSL 160
WTGK++FS+++P ++NM + + + D VV+E+G L+ G++ +K+
Sbjct: 535 WTGKEIFSMVLPDDLNMV--YRAEVCRKCEECLEMECENDAYVVIENGQLISGVIDEKAY 592
Query: 161 GTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMA 220
G +G +L E G + F + + ++ G + D
Sbjct: 593 GAFAGKILDHIVKEYGTDAAREFLDSATKLAIAGIMHAGFTTSTNDE------------- 639
Query: 221 IKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQK 280
E+ ++A I+ ++ A+ V ++I+
Sbjct: 640 ---------EIPEEARE------------------------RIEAHLRNAEARVDQLIEA 666
Query: 281 AHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSL-TEYNNLKAMVVAGSKGSN 339
N +LEP PG +L +T E ++ ++L +ARDK+G A+ + N+ M + G++GS
Sbjct: 667 YENGELEPLPGRSLEETLEMKIMQVLGEARDKSGEIAESYFDMDENHAVIMALTGARGSM 726
Query: 340 INISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFF 399
+N++Q+ ACVGQQ+V G RI G+ RTLPHF K + G +SRGFV +SY GL P EFFF
Sbjct: 727 LNLTQITACVGQQSVRGGRISRGYDNRTLPHFKKGELGAKSRGFVHSSYKEGLDPIEFFF 786
Query: 400 HAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
HAMGGREGL+DTA++TA++GY+QRRL+ A++ + V + V ++ G +IQ R+GEDG+
Sbjct: 787 HAMGGREGLVDTAIRTAQSGYMQRRLVNALQDLTVDENGRVVDNRGVIIQNRFGEDGV 844
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 62/87 (71%)
Query: 998 LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
L G + Q+ ACVGQQ+V G RI G+ RTLPHF K + G +SRGFV +SY G
Sbjct: 719 LTGARGSMLNLTQITACVGQQSVRGGRISRGYDNRTLPHFKKGELGAKSRGFVHSSYKEG 778
Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAET 1084
L P EFFFHAMGGREGL+DTA++TA++
Sbjct: 779 LDPIEFFFHAMGGREGLVDTAIRTAQS 805
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 42/51 (82%)
Query: 30 EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILM 80
++++ILG++P+ ARP+WM++TVLPVPP++VRP++ + R+++ + + L+
Sbjct: 186 DDALILGVNPEVARPEWMVLTVLPVPPVTVRPSITLETGERSEDDLTHKLV 236
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QRRL+ A++ + V + V ++ G +IQ R+GEDG+
Sbjct: 806 GYMQRRLVNALQDLTVDENGRVVDNRGVIIQNRFGEDGV 844
>sp|P41556|RPOA1_METVS DNA-directed RNA polymerase subunit A' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoA1 PE=3 SV=1
Length = 889
Score = 198 bits (503), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 118/356 (33%), Positives = 182/356 (51%), Gaps = 50/356 (14%)
Query: 101 WTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSL 160
++GK +FS +P +N+ + D V++ +G L+ G++ K
Sbjct: 555 YSGKSLFSKTLPKGLNLQYKAKVCKKCVQCKREEC--ENDAFVIIRNGRLVQGVIDKNGF 612
Query: 161 GTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMA 220
G +G +L+ + G E F + + ++L G + GI D
Sbjct: 613 GAETGVVLNTIVKDFGSEDARTFLDSATKMSVKSMMLRGFTTGIDD-------------- 658
Query: 221 IKKAKEDV-IEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQ 279
ED+ E IQ EIQ + KA+ DV E+++
Sbjct: 659 -----EDIPSEAIQ----------------------------EIQDLLDKAESDVQEIVE 685
Query: 280 KAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSN 339
+ L+P PG + ++ E + +IL ARD TG A+K L++ N+ M G++GS
Sbjct: 686 RYEGGTLDPLPGRGIEESREAYIMQILGKARDDTGKVAEKYLSKENHAALMARTGARGSL 745
Query: 340 INISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFF 399
+NI+ + A VGQQ+V G R+ G+R RTLPHF + +S GFV + Y GL P+E+FF
Sbjct: 746 LNITMMAASVGQQSVRGGRVFRGYRGRTLPHFGEGSLDAKSHGFVRSCYKKGLAPTEYFF 805
Query: 400 HAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGED 455
HAMGGREGL+D AV+TA++GY+QRRL+ A++ + YD TVR+S G ++Q YGED
Sbjct: 806 HAMGGREGLVDQAVRTAQSGYMQRRLVNALQDIKAEYDGTVRDSRGIIVQFNYGED 861
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 75/137 (54%), Gaps = 4/137 (2%)
Query: 970 LFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENR---FQQAQVIACVGQQNVEGKRIP 1026
+ Q L ++ T VAE Y LS E L+ R + A VGQQ+V G R+
Sbjct: 708 IMQILGKARDDTGKVAEKY-LSKENHAALMARTGARGSLLNITMMAASVGQQSVRGGRVF 766
Query: 1027 FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVN 1086
G+R RTLPHF + +S GFV + Y GL P+E+FFHAMGGREGL+D AV+TA++
Sbjct: 767 RGYRGRTLPHFGEGSLDAKSHGFVRSCYKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGY 826
Query: 1087 VLVFLFQVTANTAIYYD 1103
+ L + YD
Sbjct: 827 MQRRLVNALQDIKAEYD 843
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 40/53 (75%)
Query: 28 PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILM 80
P E+ +LG++ + ARP++M++TVLPVPP++VRP++ + R+++ + + L+
Sbjct: 191 PNEDCKLLGINSRVARPEYMVLTVLPVPPVTVRPSITLESGERSEDDLTHKLV 243
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGED 628
GY+QRRL+ A++ + YD TVR+S G ++Q YGED
Sbjct: 825 GYMQRRLVNALQDIKAEYDGTVRDSRGIIVQFNYGED 861
>sp|P15349|RPOA1_HALMO DNA-directed RNA polymerase subunit A' (Fragment) OS=Halococcus
morrhuae GN=rpoA1 PE=3 SV=1
Length = 349
Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/211 (45%), Positives = 133/211 (63%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNR 304
G SIGI D +I ++ A E V E+I N DLE PG T+ +T E ++ +
Sbjct: 66 GFSIGIDDESISDAAEAQIDESMDNAYERVQELIDTYENDDLESLPGRTVDETLEMKIMQ 125
Query: 305 ILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
L ARD G A + + N M +G++GS +N++Q+ ACVGQQ V G+RI G+
Sbjct: 126 TLGKARDSAGDIADEHFDDDNPAVIMAESGARGSMLNLTQMAACVGQQAVRGERINRGYE 185
Query: 365 KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 424
RTL HF D E+ GFVE+SY +GLTP EFFFHAMGGREGL+DTAV+T+++GY+QRR
Sbjct: 186 GRTLSHFKPGDLSAEAHGFVEDSYRSGLTPREFFFHAMGGREGLVDTAVRTSKSGYLQRR 245
Query: 425 LIKAMESVMVHYDCTVRNSVGQLIQLRYGED 455
LI A+ + YD TVR++ ++Q +GED
Sbjct: 246 LINALSELETQYDGTVRDTSDNIVQFEFGED 276
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 80/145 (55%), Gaps = 5/145 (3%)
Query: 1010 QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 1069
Q+ ACVGQQ V G+RI G+ RTL HF D E+ GFVE+SY +GLTP EFFFHAMG
Sbjct: 165 QMAACVGQQAVRGERINRGYEGRTLSHFKPGDLSAEAHGFVEDSYRSGLTPREFFFHAMG 224
Query: 1070 GREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDP 1129
GREGL+DTAV+T+++ + L + YD TV V + + P
Sbjct: 225 GREGLVDTAVRTSKSGYLQRRLINALSELETQYD----GTVRDTSDNIVQFEFGEDNTSP 280
Query: 1130 TRISPWLLRIELDRKRMTDKKLTME 1154
++S E+D + D+ L E
Sbjct: 281 VKVSSSDDN-EIDVDEIADRVLAAE 304
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGED 628
GY+QRRLI A+ + YD TVR++ ++Q +GED
Sbjct: 240 GYLQRRLINALSELETQYDGTVRDTSDNIVQFEFGED 276
>sp|P25202|RPC1_GIAIN DNA-directed RNA polymerase III subunit RPC1 OS=Giardia intestinalis
GN=RPOA3 PE=3 SV=1
Length = 1741
Score = 194 bits (492), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 182/375 (48%), Gaps = 55/375 (14%)
Query: 89 MPQPCILKPKPLWTGKQVFSLIIPGN------VNMTRTHSTHPDDEDSGPYQWISPGDTK 142
+ QPCI+ P+ L++GKQV S+++ GN +N+ T+ D D + +S D
Sbjct: 837 LSQPCIVYPRQLYSGKQVLSVLMKGNDFDSVNINLEHGDKTYKKDSDR---RALSVNDDY 893
Query: 143 VVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSI 202
+++++ L+G L K L +S + + G R V +L+
Sbjct: 894 IIIQNSEHLVGRLTKTFLASSKNCIFYFLVQNYGPVSAARIMLRFAKVAARFLM------ 947
Query: 203 GIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLE 262
G +IGI D + + +
Sbjct: 948 ----------------------------------------NYGFTIGIDDVMPSQRVLGK 967
Query: 263 IQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLT 322
++ +++ E E I+ + LE PG+T+++T E +N+IL++ R+ A K L
Sbjct: 968 KEVIVQEGYEKAQEKIRDYESGKLEAIPGSTVQETLEATLNQILSNVRESCAQIALKELH 1027
Query: 323 EYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRG 382
N M + GSKGS INI+Q+I +GQQ+ G R P F R+ P+F P ++G
Sbjct: 1028 FTNKPLIMSLCGSKGSPINIAQMIIILGQQSFGGSRAPDDFYTRSTPYFYHYSKEPNAKG 1087
Query: 383 FVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRN 442
F+ NS+ GL P EF HA GR+G+ID+A KTA+TGY+QRRL+K +E + V YD TVRN
Sbjct: 1088 FILNSFYTGLLPFEFLAHARAGRDGVIDSACKTADTGYLQRRLVKCLEDLSVSYDFTVRN 1147
Query: 443 SVGQLIQLRYGEDGL 457
S ++Q R+G DG
Sbjct: 1148 SKKSVVQFRFGHDGF 1162
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 1244 RIIITESGEF-------KAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGI 1296
R +I E EF + + L +G L +L+ +D RT SN+I E+ LGI
Sbjct: 1491 RAVINEYKEFCQGATSSAPLTKYNLLVEGIGLQNILNVSGIDFTRTLSNNIVEVANTLGI 1550
Query: 1297 EAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT-GALMRC 1355
EA ++ E+ + +G+ V+ RH+ LL D+M +G ++ TR G+ + +M
Sbjct: 1551 EAAVATISNEIKACMDSHGMAVDMRHIRLLADIMCFRGRVLGFTRFGLTKMKADSVIMLA 1610
Query: 1356 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1399
SFE+T + L +AA + D GV+E+II+G+ MGTG F LL
Sbjct: 1611 SFEKTGEHLFNAALGNKVDEANGVTESIILGKPMSMGTGSFSLL 1654
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
AQ+I +GQQ+ G R P F R+ P+F P ++GF+ NS+ GL P EF HA
Sbjct: 1048 AQMIIILGQQSFGGSRAPDDFYTRSTPYFYHYSKEPNAKGFILNSFYTGLLPFEFLAHAR 1107
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
GR+G+ID+A KTA+T + L + + ++ YD +N+ + V + FD
Sbjct: 1108 AGRDGVIDSACKTADTGYLQRRLVKCLEDLSVSYDFTVRNS----KKSVVQFRFGHDGFD 1163
Query: 1129 PTRI 1132
P ++
Sbjct: 1164 PIKL 1167
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 785 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA-LMRCSFEET 843
++ E+ + +G+ V+ RH+ LL D+M +G ++ TR G+ + + +M SFE+T
Sbjct: 1556 TISNEIKACMDSHGMAVDMRHIRLLADIMCFRGRVLGFTRFGLTKMKADSVIMLASFEKT 1615
Query: 844 VDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 882
+ L +AA + D GV+E+II+G+ MGTG F LL
Sbjct: 1616 GEHLFNAALGNKVDEANGVTESIILGKPMSMGTGSFSLL 1654
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QRRL+K +E + V YD TVRNS ++Q R+G DG
Sbjct: 1124 GYLQRRLVKCLEDLSVSYDFTVRNSKKSVVQFRFGHDGF 1162
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 514 LTSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFE 572
+ ++ E+ + +G+ V+ RH+ LL D+M +G ++ TR G+ + +M SFE
Sbjct: 1554 VATISNEIKACMDSHGMAVDMRHIRLLADIMCFRGRVLGFTRFGLTKMKADSVIMLASFE 1613
Query: 573 ETVDVLMDAAAHAEADPMRGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCG 632
+T + L +AA + D G ES+++ ++ L+Q Y ++ G
Sbjct: 1614 KTGEHLFNAALGNKVDEANG--------VTESIILGKPMSMGTGSFSLLQAPYFDEK-TG 1664
Query: 633 EAVEHQ 638
+ +E+Q
Sbjct: 1665 KTIEYQ 1670
>sp|O54889|RPA1_RAT DNA-directed RNA polymerase I subunit RPA1 OS=Rattus norvegicus
GN=Polr1a PE=1 SV=1
Length = 1716
Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/384 (31%), Positives = 188/384 (48%), Gaps = 42/384 (10%)
Query: 88 KMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWI----------- 136
K+ P ILKP PLWTGKQV S ++ + T G W+
Sbjct: 676 KLFPPAILKPFPLWTGKQVVSTLLINIIPEDYTPLNLTGKAKIGSKAWVKEKPRPVPDFD 735
Query: 137 --SPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
S +++V++ G LL G+L K G+S+ L+H C+ G E GR + + +
Sbjct: 736 PDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAY 795
Query: 195 L-LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
L L G ++G+ D + P + Q I+++ + ++ A N+
Sbjct: 796 LQLYRGFTLGVEDILVKPNADVMRQRIIEESTQCGPRAVRAALNL--------------- 840
Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
+ + EIQ K ++ + Q+ NM + F+ +VN N+
Sbjct: 841 -PEAASCDEIQ---GKWQDAIWRKDQRDFNM---------IDMKFKEEVNHYSNEINKAC 887
Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
NNL+ MV +G+KGS +N Q+ +GQ +EG+R P ++LP F
Sbjct: 888 MPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEP 947
Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
++ P + GFV +L G+ P EFFFH M GREGL+DTAVKT+ +GY+QR +IK +E ++
Sbjct: 948 YEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLV 1007
Query: 434 VHYDCTVRNSVGQLIQLRYGEDGL 457
+ YD TVR+S G ++Q YGEDGL
Sbjct: 1008 IQYDLTVRDSDGSVVQFLYGEDGL 1031
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 2/156 (1%)
Query: 1244 RIIITESGEFKAIADWLLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKS 1302
R ++ E+ K +++L T+G +L ++ +V D R +SNDI + GIEA +
Sbjct: 1557 RCLLNETINSKNEKEFVLNTEGINLPELFKYSEVLDLRRLYSNDIHAVANTYGIEAALRV 1616
Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1362
+EKE+ V YG+ V+ RHL+L+ D M +G + R GI + + L + +FE +
Sbjct: 1617 IEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-QSSSSPLQQMTFETSFQ 1675
Query: 1363 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1398
L A D ++ S +++G++ + GTG F+L
Sbjct: 1676 FLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFEL 1711
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 54/94 (57%)
Query: 1010 QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 1069
Q+ +GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M
Sbjct: 918 QISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMA 977
Query: 1070 GREGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
GREGL+DTAVKT+ + + + + I YD
Sbjct: 978 GREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYD 1011
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 784 KSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 843
+ +EKE+ V YG+ V+ RHL+L+ D M +G + R GI + + L + +FE +
Sbjct: 1615 RVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-QSSSSPLQQMTFETS 1673
Query: 844 VDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 881
L A D ++ S +++G++ + GTG F+L
Sbjct: 1674 FQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFEL 1711
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR +IK +E +++ YD TVR+S G ++Q YGEDGL
Sbjct: 993 GYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGL 1031
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 514 LTSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 573
L +EKE+ V YG+ V+ RHL+L+ D M +G + R GI + + L + +FE
Sbjct: 1614 LRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-QSSSSPLQQMTFET 1672
Query: 574 TVDVLMDAAAHAEADPMR 591
+ L A D ++
Sbjct: 1673 SFQFLKQATMMGSHDELK 1690
>sp|Q03585|RPOA1_THEAC DNA-directed RNA polymerase subunit A' OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoA1 PE=3 SV=1
Length = 885
Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 121/425 (28%), Positives = 212/425 (49%), Gaps = 60/425 (14%)
Query: 63 VVMHGSAR-NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTH 121
++ H + R E+M++I+ +L +P+ I + + G+ +FS I+P +N+
Sbjct: 516 LLTHNNPRYTHEEMVHIMAYL--EPDLLPEARIENGEKYYYGRDIFSTILPKGLNVRFRS 573
Query: 122 STHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCG 181
+ ++ P DT V + G ++ G + + ++ SG+++ F + G +
Sbjct: 574 KLCSGSSERCEFED-DPSDTYVEIVDGKMIHGTIDEAAVSPFSGAIIDKIFRKFGSQEAA 632
Query: 182 RFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLE 241
RF + + ++ TY
Sbjct: 633 RFIDRMTRLAVGFI-----------------TYR-------------------------- 649
Query: 242 PTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQ 301
G S GI D I+ + +A++ + ++I+ +L+P PG ++ T E +
Sbjct: 650 ---GFSTGISDYDIPESAVARIEELVAQAEDRINKLIETFRRGELQPAPGRSVEDTLEME 706
Query: 302 VNRILNDARDKTGGSAKKSLTEYNNLKA----MVVAGSKGSNINISQVIACVGQQNVEGK 357
+ RD++G K + Y LK M +G++ + +NIS+V VGQQ+V G
Sbjct: 707 ILSEAGVVRDESG----KIASSYLGLKVPSVIMARSGARATMLNISEVAGIVGQQSVRGG 762
Query: 358 RIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAE 417
R+ G+ RTLPHF + D G ++RGFV +SY+ GL+P+E+FFH++GGREGL+DTAV+T+
Sbjct: 763 RLNRGYYNRTLPHFKRGDIGADARGFVRSSYMTGLSPTEYFFHSIGGREGLVDTAVRTSR 822
Query: 418 TGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKF 477
+GY+QRRLI A E + V V+++VG LIQ+RYGEDG+ + R V +++ F
Sbjct: 823 SGYMQRRLINAFEDLKVDDSREVKDTVGSLIQIRYGEDGI--DPTRSARGKAVDMNYILF 880
Query: 478 EDKYR 482
+++ R
Sbjct: 881 DEERR 885
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 76/123 (61%), Gaps = 4/123 (3%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
++V VGQQ+V G R+ G+ RTLPHF + D G ++RGFV +SY+ GL+P+E+FFH++
Sbjct: 748 SEVAGIVGQQSVRGGRLNRGYYNRTLPHFKRGDIGADARGFVRSSYMTGLSPTEYFFHSI 807
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
GGREGL+DTAV+T+ + + L + + + ++TV + + Y D
Sbjct: 808 GGREGLVDTAVRTSRSGYMQRRLINAFEDLKVDDSREVKDTV----GSLIQIRYGEDGID 863
Query: 1129 PTR 1131
PTR
Sbjct: 864 PTR 866
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 39/53 (73%)
Query: 28 PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILM 80
P ++ I G +PK ARP+WM++TVLPVPP++VRP++ + R+++ + + L+
Sbjct: 190 PDDDLIFFGFNPKTARPEWMVLTVLPVPPINVRPSITLETGERSEDDLTHKLV 242
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GY+QRRLI A E + V V+++VG LIQ+RYGEDG+ + R V +++ F+
Sbjct: 824 GYMQRRLINAFEDLKVDDSREVKDTVGSLIQIRYGEDGI--DPTRSARGKAVDMNYILFD 881
Query: 652 DKYR 655
++ R
Sbjct: 882 EERR 885
>sp|Q86H36|RPA1_DICDI DNA-directed RNA polymerase I subunit rpa1 OS=Dictyostelium
discoideum GN=polr1a PE=3 SV=1
Length = 1615
Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 129/425 (30%), Positives = 204/425 (48%), Gaps = 38/425 (8%)
Query: 90 PQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPG-----DTKVV 144
P PCILKP PLW+GKQ+ S + + + R W + G D+ V+
Sbjct: 678 PPPCILKPVPLWSGKQLISAAL-NQLTIGRAPLNLEAPSKIPTKMWGTKGLEITRDSHVI 736
Query: 145 VEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
+ ++ GIL K G SS L+H C+ +V G + + N+L G + G+
Sbjct: 737 IRQNEMVAGILDKGHFGASSYGLVHTCYELYDPDVAGSLLTLLGRMFTNYLQSRGFTCGV 796
Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQ 264
D + K ++ +E ++KA+ G+++ AD Y E
Sbjct: 797 DDLLMK-----------NKEEKFRVETLKKANE------EGYTVAA--KFADLSKYDE-- 835
Query: 265 MAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY 324
+KA++ + +Q + L + +N+ + D ++
Sbjct: 836 ---QKARDFFSKALQSEREVA-------RLDGLLKKGLNQYTSKVIDTLIPGGQQKPFPK 885
Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
NN M V+G+KGS +N SQV +GQQ +EGKR+P +TLP F D + GFV
Sbjct: 886 NNFSLMTVSGAKGSVVNFSQVSCLLGQQELEGKRVPRMVSGKTLPSFQAYDASARAGGFV 945
Query: 385 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSV 444
+ +L G+ P ++FFH M GREGLIDTAVKT+ +GY+QR LIK +E + V YD TVR S
Sbjct: 946 MDRFLTGVRPQDYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVQYDNTVRESD 1005
Query: 445 GQLIQLRYGEDGL-CGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLRNVSSLRRVVN 503
G +IQ YGED L G+ + +A +++ F+ ++ + E+ + V R +
Sbjct: 1006 GSVIQFNYGEDSLEIGKTPYLTKFPIIAENYELFKSQFPMEQLIEQLKNQEVVEYNRSIK 1065
Query: 504 SKPLL 508
++P L
Sbjct: 1066 TQPEL 1070
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 81/144 (56%), Gaps = 6/144 (4%)
Query: 1259 WLLETDGTSLMKVLSERD---VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYG 1315
+ ++++G +L ++ RD +D + ++NDI I Q G+EA R++V E++ V YG
Sbjct: 1471 YSIQSEGVNLSEIFELRDKLKIDEI--YTNDIYAILQKYGVEACRQAVTSEISNVFAAYG 1528
Query: 1316 LYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADP 1375
+ V+ RHL LL D MT +G A+ R GI +T + SFE T L A+ + D
Sbjct: 1529 ISVDKRHLILLGDYMTFEGGYRALNRIGI-ENNTSPFQKMSFETTFSFLSKASLMGDYDT 1587
Query: 1376 MRGVSENIIMGQLPRMGTGCFDLL 1399
+ S I++GQ+ + GTG F ++
Sbjct: 1588 VTSPSSRIVLGQIVKNGTGSFTIV 1611
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 7/154 (4%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+QV +GQQ +EGKR+P +TLP F D + GFV + +L G+ P ++FFH M
Sbjct: 904 SQVSCLLGQQELEGKRVPRMVSGKTLPSFQAYDASARAGGFVMDRFLTGVRPQDYFFHCM 963
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
GREGLIDTAVKT+ + + L + ++ YD NTV D + Y +
Sbjct: 964 AGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVQYD----NTVRESDGSVIQFNYGEDSLE 1019
Query: 1129 PTRISPWLLRIEL--DRKRMTDKKLTMEAISEKI 1160
+ +P+L + + + + + ME + E++
Sbjct: 1020 IGK-TPYLTKFPIIAENYELFKSQFPMEQLIEQL 1052
Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 779 VLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 838
V + R++V E++ V YG+ V+ RHL LL D MT +G A+ R GI +T +
Sbjct: 1509 VEACRQAVTSEISNVFAAYGISVDKRHLILLGDYMTFEGGYRALNRIGI-ENNTSPFQKM 1567
Query: 839 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 882
SFE T L A+ + D + S I++GQ+ + GTG F ++
Sbjct: 1568 SFETTFSFLSKASLMGDYDTVTSPSSRIVLGQIVKNGTGSFTIV 1611
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL-CGEAVEHQRIDTVALSHKKF 650
GY+QR LIK +E + V YD TVR S G +IQ YGED L G+ + +A +++ F
Sbjct: 980 GYLQRCLIKHLEGLSVQYDNTVRESDGSVIQFNYGEDSLEIGKTPYLTKFPIIAENYELF 1039
Query: 651 EDKYRFDPSNERQLRRIFNEDVL 673
+ ++ E+ + ++ N++V+
Sbjct: 1040 KSQFPM----EQLIEQLKNQEVV 1058
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
+V E++ V YG+ V+ RHL LL D MT +G A+ R GI +T + SFE T
Sbjct: 1515 AVTSEISNVFAAYGISVDKRHLILLGDYMTFEGGYRALNRIGI-ENNTSPFQKMSFETTF 1573
Query: 576 DVLMDAAAHAEAD 588
L A+ + D
Sbjct: 1574 SFLSKASLMGDYD 1586
>sp|O35134|RPA1_MOUSE DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus GN=Polr1a
PE=1 SV=2
Length = 1717
Score = 187 bits (475), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 123/384 (32%), Positives = 193/384 (50%), Gaps = 42/384 (10%)
Query: 88 KMPQPCILKPKPLWTGKQVFSL----IIPGN---VNMT---RTHSTHPDDEDSGPYQWIS 137
K+ P ILKP PLWTGKQV S IIP + +N++ + S E P
Sbjct: 676 KLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLNLSGKAKIGSKAWVKEKPRPIPDFD 735
Query: 138 PG---DTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
P +++V++ G LL G+L K G+S+ L+H C+ G E GR + + +
Sbjct: 736 PDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAY 795
Query: 195 L-LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
L L G ++G+ D + P + Q I+++ + + ++ A ++
Sbjct: 796 LQLYRGFTLGVEDILVKPNADVVRQRIIEESTQCGPQAVKAALSL--------------- 840
Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
P+T A D I+ + ++ + N + F+ +VN N+
Sbjct: 841 ---PET----------ASCDEIQGKWQDAHLSKDQRDFNMIDMKFKEEVNHYSNEINKAC 887
Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
NNL+ MV +G+KGS +N Q+ +GQ +EG+R P ++LP F
Sbjct: 888 MPLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEP 947
Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
++ P + GFV +L G+ P EFFFH M GREGL+DTAVKT+ +GY+QR +IK +E ++
Sbjct: 948 YEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLV 1007
Query: 434 VHYDCTVRNSVGQLIQLRYGEDGL 457
+ YD TVR+S G ++Q YGEDGL
Sbjct: 1008 IQYDLTVRDSDGSVVQFLYGEDGL 1031
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 83/156 (53%), Gaps = 2/156 (1%)
Query: 1244 RIIITESGEFKAIADWLLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKS 1302
R ++ E+ K + +L T+G +L ++ ++ D R +SNDI + GIEA +
Sbjct: 1558 RCLLNETTNSKNEKELVLNTEGINLPELFKYSEILDLRRLYSNDIHAMANTYGIEAALRV 1617
Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1362
+EKE+ V YG+ V+ RHL+L+ D M +G + R GI + + L + +FE +
Sbjct: 1618 IEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-QSSSSPLQQMTFETSFQ 1676
Query: 1363 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1398
L A D ++ S +++G++ + GTG F+L
Sbjct: 1677 FLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFEL 1712
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 54/94 (57%)
Query: 1010 QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 1069
Q+ +GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M
Sbjct: 918 QISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMA 977
Query: 1070 GREGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
GREGL+DTAVKT+ + + + + I YD
Sbjct: 978 GREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYD 1011
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
Query: 758 ILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 817
IL +L+ N ++ + + + + +EKE+ V YG+ V+ RHL+L+ D M +G
Sbjct: 1591 ILDLRRLYSN-DIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1649
Query: 818 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 877
+ R GI + + L + +FE + L A D ++ S +++G++ + GTG
Sbjct: 1650 VYKPLNRFGI-QSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTG 1708
Query: 878 CFDL 881
F+L
Sbjct: 1709 LFEL 1712
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR +IK +E +++ YD TVR+S G ++Q YGEDGL
Sbjct: 993 GYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGL 1031
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 514 LTSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 573
L +EKE+ V YG+ V+ RHL+L+ D M +G + R GI + + L + +FE
Sbjct: 1615 LRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-QSSSSPLQQMTFET 1673
Query: 574 TVDVLMDAAAHAEADPMR 591
+ L A D ++
Sbjct: 1674 SFQFLKQATMMGSHDELK 1691
>sp|O95602|RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens GN=POLR1A
PE=1 SV=2
Length = 1720
Score = 187 bits (475), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 193/385 (50%), Gaps = 44/385 (11%)
Query: 88 KMPQPCILKPKPLWTGKQVFSL----IIP---------GNVNMTRTHSTHPDDEDSGPYQ 134
K+ P ILKP PLWTGKQV S IIP G +T +
Sbjct: 669 KLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAWVKETPRSVPGFN 728
Query: 135 WISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNW 194
S +++V++ G LL G+L K G+S+ L+H C+ G E G+ + + +
Sbjct: 729 PDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAY 788
Query: 195 L-LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
L L G ++G+ D + P+ ++ Q I+++ + ++ A N+
Sbjct: 789 LQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNL--------------- 833
Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNM-DLEPTPGNTLRQTFENQVNRILNDARDK 312
+ +Y E++ K ++ + Q+ NM DL+ F+ +VN N+
Sbjct: 834 -PEAASYDEVR---GKWQDAHLGKDQRDFNMIDLK----------FKEEVNHYSNEINKA 879
Query: 313 TGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 372
N+L+ MV +G+KGS +N Q+ +GQ +EG+R P ++LP F
Sbjct: 880 CMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFE 939
Query: 373 KDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 432
++ P + GFV +L G+ P EFFFH M GREGL+DTAVKT+ +GY+QR +IK +E +
Sbjct: 940 PYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGL 999
Query: 433 MVHYDCTVRNSVGQLIQLRYGEDGL 457
+V YD TVR+S G ++Q YGEDGL
Sbjct: 1000 VVQYDLTVRDSDGSVVQFLYGEDGL 1024
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 2/156 (1%)
Query: 1244 RIIITESGEFKAIADWLLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKS 1302
R ++ E+ K + +L T+G +L ++ +V D R +SNDI I GIEA +
Sbjct: 1561 RCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRV 1620
Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1362
+EKE+ V YG+ V+ RHL+L+ D M +G + R GI R ++ L + +FE +
Sbjct: 1621 IEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQ 1679
Query: 1363 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1398
L A D +R S +++G++ R GTG F+L
Sbjct: 1680 FLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFEL 1715
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%)
Query: 1010 QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 1069
Q+ +GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M
Sbjct: 911 QISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMA 970
Query: 1070 GREGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
GREGL+DTAVKT+ + + + + + YD
Sbjct: 971 GREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 758 ILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 817
+L +L+ N ++ + + + + +EKE+ V YG+ V+ RHL+L+ D M +G
Sbjct: 1594 VLDLRRLYSN-DIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1652
Query: 818 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 877
+ R GI R ++ L + +FE + L A D +R S +++G++ R GTG
Sbjct: 1653 VYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTG 1711
Query: 878 CFDL 881
F+L
Sbjct: 1712 LFEL 1715
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL
Sbjct: 986 GYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 1024
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 514 LTSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 573
L +EKE+ V YG+ V+ RHL+L+ D M +G + R GI R ++ L + +FE
Sbjct: 1618 LRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFET 1676
Query: 574 TVDVLMDAAAHAEADPMR 591
+ L A D +R
Sbjct: 1677 SFQFLKQATMLGSHDELR 1694
>sp|P09846|RPOA1_METTW DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoA1 PE=3 SV=2
Length = 865
Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 192/373 (51%), Gaps = 55/373 (14%)
Query: 86 DGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVV 145
+G+ P P + WT K++FS+++P ++NM ++ W D VV+
Sbjct: 521 EGRAPPPD--REGREWTVKEIFSMVLPDDLNMVYLAEICRKCDECLEMDW--ENDAYVVI 576
Query: 146 EHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIG 205
E+G L+ G++ +K+ G +G +L E G + F + + ++ G +
Sbjct: 577 ENGQLITGVIDEKAYGAFAGKILDQIVKEYGSDAAKEFLDSATKLAIAGIMHAGFTTSTN 636
Query: 206 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQM 265
D + ++AKE I+
Sbjct: 637 D-----------EEIPEEAKE-----------------------------------RIEA 650
Query: 266 AIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSL-TEY 324
++ A+ V ++I+ N +LEP PG +L +T E ++ ++L +A+DK+G A+ +
Sbjct: 651 HLRNAEARVDQLIEAYENGELEPLPGRSLEETLEMKIMQVLGEAKDKSGEIAESYFDMDE 710
Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
N+ M + G++G+ +N++Q+ ACVGQQ+V G RI G+ RTLPHF K + G +SRGFV
Sbjct: 711 NHAVIMALTGARGAMLNLTQITACVGQQSVHGGRITRGYDNRTLPHFKKGELGAKSRGFV 770
Query: 385 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSV 444
+SY EF MGGREGL+DTA++TA++GY+QRRL+ A++ + V + V ++
Sbjct: 771 HSSYKEDSILLEF----MGGREGLVDTAIRTAQSGYMQRRLVNALQDLTVDENGRVVDNR 826
Query: 445 GQLIQLRYGEDGL 457
G +IQ R+GEDG+
Sbjct: 827 GVIIQTRFGEDGV 839
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 1010 QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 1069
Q+ ACVGQQ+V G RI G+ RTLPHF K + G +SRGFV +SY EF MG
Sbjct: 730 QITACVGQQSVHGGRITRGYDNRTLPHFKKGELGAKSRGFVHSSYKEDSILLEF----MG 785
Query: 1070 GREGLIDTAVKTAET 1084
GREGL+DTA++TA++
Sbjct: 786 GREGLVDTAIRTAQS 800
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 41/50 (82%)
Query: 31 ESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILM 80
+S++LG++P+ ARP+WM++TVLPVPP++VRP++ + R+++ + + L+
Sbjct: 187 DSLLLGVNPEVARPEWMVLTVLPVPPVTVRPSITLETGERSEDDLTHKLV 236
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QRRL+ A++ + V + V ++ G +IQ R+GEDG+
Sbjct: 801 GYMQRRLVNALQDLTVDENGRVVDNRGVIIQTRFGEDGV 839
>sp|P91875|RPA1_DROME DNA-directed RNA polymerase I subunit RPA1 OS=Drosophila melanogaster
GN=RpI1 PE=1 SV=2
Length = 1642
Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 118/400 (29%), Positives = 196/400 (49%), Gaps = 69/400 (17%)
Query: 86 DGKMPQPCILKPKPLWTGKQV--------------------FSLIIPGNVNMTRTH---- 121
D K+ P ILKP LW+GKQ+ F+ I N N++R
Sbjct: 644 DIKLLPPTILKPAVLWSGKQILSTIIINIIPEGYERINLDSFAKIAGKNWNVSRPRPPIC 703
Query: 122 STHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCG 181
T+P+ D +++V + +G LL+G+L K+ G ++ L+H + G +V
Sbjct: 704 GTNPEGNDLS--------ESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDVST 755
Query: 182 RFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLE 241
V +L LEG ++G+ D + + + I++ + + A ++LE
Sbjct: 756 LLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAA--LELE 813
Query: 242 PTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQ 301
P H ++++E ++ A+ D + R + +
Sbjct: 814 DEPPH-------------------------DELVEKMEAAYVKD------SKFRVLLDRK 842
Query: 302 VNRILNDARDKTGGSA--KKSLTEY--NNLKAMVVAGSKGSNINISQVIACVGQQNVEGK 357
+L+ + + + +T++ NNL+ MV++G+KGS +N Q+ +GQ +EGK
Sbjct: 843 YKSLLDGYTNDINSTCLPRGLITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGK 902
Query: 358 RIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAE 417
R P ++LP F + P+S GF++ ++ G+ P +FFFH M GREGLIDTAVKT+
Sbjct: 903 RPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSR 962
Query: 418 TGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
+GY+QR LIK +E + VHYD TVR+S ++Q YGEDGL
Sbjct: 963 SGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGL 1002
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 95/181 (52%), Gaps = 8/181 (4%)
Query: 1220 DMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV-D 1278
D+T E GK +H Q KR II + + D LL+TDG ++ ++ + D
Sbjct: 1465 DLTSIIRELAGKSVVH--QVQHIKRAIIYKGND----DDQLLKTDGINIGEMFQHNKILD 1518
Query: 1279 PVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMA 1338
R +SNDI I + GIEA + + KE++ V + YG+ V+ RHL+L+ D MT G
Sbjct: 1519 LNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQP 1578
Query: 1339 ITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1398
++R G+ + L + SFE ++ L AA AD + S +++G R GTG F+L
Sbjct: 1579 LSRKGME-HSSSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFEL 1637
Query: 1399 L 1399
L
Sbjct: 1638 L 1638
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 75/142 (52%), Gaps = 9/142 (6%)
Query: 973 CLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKR 1032
CL R L TK + N +L L G + Q+ +GQ +EGKR P +
Sbjct: 858 CLPRG-LITKFPSNNLQLMV-----LSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGK 911
Query: 1033 TLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLF 1092
+LP F + P+S GF++ ++ G+ P +FFFH M GREGLIDTAVKT+ + + L
Sbjct: 912 SLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLI 971
Query: 1093 QVTANTAIYYD---PDPQNTVI 1111
+ +++YD D N+V+
Sbjct: 972 KHLEGLSVHYDLTVRDSDNSVV 993
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
Query: 758 ILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 817
IL +L+ N+ + + + + + + + KE++ V + YG+ V+ RHL+L+ D MT G
Sbjct: 1516 ILDLNRLYSND-IHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDG 1574
Query: 818 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 877
++R G+ + L + SFE ++ L AA AD + S +++G R GTG
Sbjct: 1575 TFQPLSRKGME-HSSSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTG 1633
Query: 878 CFDLL 882
F+LL
Sbjct: 1634 AFELL 1638
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 29/39 (74%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR LIK +E + VHYD TVR+S ++Q YGEDGL
Sbjct: 964 GYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGL 1002
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 517 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 576
+ KE++ V + YG+ V+ RHL+L+ D MT G ++R G+ + L + SFE ++
Sbjct: 1543 IVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKGME-HSSSPLQQMSFESSLQ 1601
Query: 577 VLMDAAAHAEADPMRGYIQRRLI 599
L AA AD + R ++
Sbjct: 1602 FLKSAAGFGRADELSSPSSRLMV 1624
>sp|P15398|RPA1_SCHPO DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpa1 PE=1 SV=2
Length = 1689
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/394 (28%), Positives = 194/394 (49%), Gaps = 34/394 (8%)
Query: 92 PCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPG--DTKVVVEHGS 149
P I +P WTGKQ+ S ++ N+ + + + P ++ SP + V+ + G
Sbjct: 732 PAIQRPGIYWTGKQIISSVLL-NLKPSDRPGLNLKSKAKVPGKYWSPDSEEGSVLFDDGE 790
Query: 150 LLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIA 209
LL GIL K S G S+ L+H G ++ GR + + + + G + + D
Sbjct: 791 LLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLSRLFTAYAQMRGFTCRMDDLRL 850
Query: 210 DPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKK 269
D Q ++++ + LE + +G + P L +
Sbjct: 851 DEQ-----------GDNWRRQLLENGKSFGLEAASEY---VGLSTDSPIALLNANL---- 892
Query: 270 AKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKA 329
E+V +K +D + ++N + + +K + YN+++
Sbjct: 893 --EEVYRDDEKLQGLD----------AAMKGKMNGLTSSIINKCIPDGLLTKFPYNHMQT 940
Query: 330 MVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL 389
M V+G+KGSN+N+SQ+ +GQQ +EG+R+P ++LP F+ + +S GF+ + +L
Sbjct: 941 MTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFL 1000
Query: 390 AGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQ 449
G+ P E++FH M GREGLIDTAVKT+ +GY+QR L+K +E + V YD TVR+S G ++Q
Sbjct: 1001 TGIAPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQ 1060
Query: 450 LRYGEDGLCGEAVEH-QRIDTVALSHKKFEDKYR 482
YGED L +H + + A ++K KY+
Sbjct: 1061 FHYGEDSLDVTKQKHLTQFEFSAKNYKSLIQKYK 1094
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 1246 IITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEK 1305
+ITE KAI ++ E +S D+ ++NDI I ++ G+EA R ++
Sbjct: 1542 VITEGVNLKAIWEFYNE---------ISMNDI-----YTNDIAAILRIYGVEAARNAIVH 1587
Query: 1306 EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 1365
E+++V YG+ V+ RHL+L+ D MT +G A R GI +T + SFE T L
Sbjct: 1588 EVSSVFGVYGIAVDPRHLSLIADYMTFEGGYKAFNRMGI-EYNTSPFAKMSFETTCHFLT 1646
Query: 1366 DAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1399
+AA + D + S +++G++ GTG FD+
Sbjct: 1647 EAALRGDVDDLSNPSSRLVVGRVGNFGTGSFDIF 1680
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+ +GQQ +EG+R+P ++LP F+ + +S GF+ + +L G+ P E++FH M
Sbjct: 954 SQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIAPQEYYFHCM 1013
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
GREGLIDTAVKT+ + + L + + YD +TV D V +Y D
Sbjct: 1014 AGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYD----HTVRDSDGSIVQFHYGEDSLD 1069
Query: 1129 PTR 1131
T+
Sbjct: 1070 VTK 1072
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 773 LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
+ +I V + R ++ E+++V YG+ V+ RHL+L+ D MT +G A R GI +T
Sbjct: 1572 ILRIYGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFEGGYKAFNRMGI-EYNT 1630
Query: 833 GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 882
+ SFE T L +AA + D + S +++G++ GTG FD+
Sbjct: 1631 SPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGSFDIF 1680
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEH-QRIDTVALSHKKF 650
GY+QR L+K +E + V YD TVR+S G ++Q YGED L +H + + A ++K
Sbjct: 1030 GYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQFHYGEDSLDVTKQKHLTQFEFSAKNYKSL 1089
Query: 651 EDKYR 655
KY+
Sbjct: 1090 IQKYK 1094
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
++ E+++V YG+ V+ RHL+L+ D MT +G A R GI +T + SFE T
Sbjct: 1583 NAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFEGGYKAFNRMGI-EYNTSPFAKMSFETT 1641
Query: 575 VDVLMDAAAHAEADPMRGYIQRRLI 599
L +AA + D + R ++
Sbjct: 1642 CHFLTEAALRGDVDDLSNPSSRLVV 1666
>sp|P10964|RPA1_YEAST DNA-directed RNA polymerase I subunit RPA190 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA190 PE=1
SV=2
Length = 1664
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 180/374 (48%), Gaps = 43/374 (11%)
Query: 92 PCILKPKPLWTGKQVFSLII--------PGNVNMTRTHSTHPDDEDSGPYQWISPGDTKV 143
P I KP PLWTGKQ+ + ++ PG +N+ + + Y + +V
Sbjct: 717 PTIFKPYPLWTGKQIITTVLLNVTPPDMPG-INLISKNKIKNE------YWGKGSLENEV 769
Query: 144 VVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIG 203
+ + G+LL GIL K G S ++H G EV + + + N++ + G
Sbjct: 770 LFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSVLGRLFTNYITATAFTCG 829
Query: 204 IGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEI 263
+ D L + K + D+++ S+ G A T L+
Sbjct: 830 MDD--------LRLTAEGNKWRTDILKT---------------SVDTGREAAAEVTNLD- 865
Query: 264 QMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTE 323
K D E++++ + + L ++VN I + K
Sbjct: 866 ----KDTPADDPELLKRLQEILRDNNKSGILDAVTSSKVNAITSQVVSKCVPDGTMKKFP 921
Query: 324 YNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF 383
N+++AM ++G+KGSN+N+SQ++ +GQQ +EG+R+P +TLP F + + G+
Sbjct: 922 CNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGY 981
Query: 384 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNS 443
V+ + +G+ P E++FH M GREGLIDTAVKT+ +GY+QR L K +E V V YD ++R++
Sbjct: 982 VKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDA 1041
Query: 444 VGQLIQLRYGEDGL 457
G L+Q YG D +
Sbjct: 1042 DGTLVQFMYGGDAI 1055
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 19/165 (11%)
Query: 1237 PQTDSKKRIIITESGEFKAIADW--LLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVL 1294
P+ ++ KR+++TE F+A+ D ++ DG + SND+ + +
Sbjct: 1510 PEPENGKRVLVTEGVNFQAMWDQEAFIDVDGIT----------------SNDVAAVLKTY 1553
Query: 1295 GIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1354
G+EA R ++ E+N V Y + V++RHL L+ D+MT +G +A R G+ T + M+
Sbjct: 1554 GVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQGM-ETSTSSFMK 1612
Query: 1355 CSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1399
S+E T L A E + + S I++G+L +GTG FD+L
Sbjct: 1613 MSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNVGTGSFDVL 1657
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q++ +GQQ +EG+R+P +TLP F + + G+V+ + +G+ P E++FH M
Sbjct: 941 SQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKPQEYYFHCM 1000
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
GREGLIDTAVKT+ + + L + + YD N++ D V Y D
Sbjct: 1001 AGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYD----NSIRDADGTLVQFMYGGDAID 1056
Query: 1129 PTRIS 1133
T+ S
Sbjct: 1057 ITKES 1061
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 773 LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
+ K V + R ++ E+N V Y + V++RHL L+ D+MT +G +A R G+ T
Sbjct: 1549 VLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQGM-ETST 1607
Query: 833 GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 882
+ M+ S+E T L A E + + S I++G+L +GTG FD+L
Sbjct: 1608 SSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNVGTGSFDVL 1657
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++ E+N V Y + V++RHL L+ D+MT +G +A R G+ T + M+ S+E T
Sbjct: 1561 TIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQGM-ETSTSSFMKMSYETTC 1619
Query: 576 DVLMDAAAHAEADPMRGYIQRRLIKAMESV 605
L A E + + R ++ + +V
Sbjct: 1620 QFLTKAVLDNEREQLDSPSARIVVGKLNNV 1649
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR L K +E V V YD ++R++ G L+Q YG D +
Sbjct: 1017 GYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMYGGDAI 1055
>sp|Q7T6X5|RPO1_MIMIV DNA-directed RNA polymerase subunit 1 OS=Acanthamoeba polyphaga
mimivirus GN=RPO1 PE=1 SV=2
Length = 1495
Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 141/256 (55%), Gaps = 5/256 (1%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNR 304
G+++ I DT+ + I I+ +++ + I + N P + FE ++
Sbjct: 663 GYTVSIKDTVIGEKVNQYIYDLIETKRKETLAFITEYDN-----DPYVMTKDAFEIKLQE 717
Query: 305 ILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
L +D+ + ++ + + + + +GS G +N Q+ C+GQ VEGKRI F
Sbjct: 718 NLKSVQDEIKNTVMRNFDKNSGIFIAISSGSSGEPMNAGQIAGCIGQVIVEGKRIQIRFN 777
Query: 365 KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 424
RTLP F K D SRGF NS++ GL P EFFF M GREG+I+TA+KTA+TGYIQR+
Sbjct: 778 GRTLPMFPKFDDSAFSRGFCRNSFIEGLGPFEFFFQVMAGREGIINTAIKTADTGYIQRK 837
Query: 425 LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
L+K +E + YD TVRN+ G+LI YG++G+ E Q+ID ++ + K + Y +
Sbjct: 838 LVKMLEDIKQEYDGTVRNANGKLISCVYGDNGINTENQVDQKIDLISANDNKVRNDYVYT 897
Query: 485 PSNERPTLRNVSSLRR 500
+ ++N + +R
Sbjct: 898 EDEIKYLIKNHKTDKR 913
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 143/281 (50%), Gaps = 9/281 (3%)
Query: 1134 PWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIR----IMNS 1189
PW+LRI L +++M ++ + M I +G + K++ +I + N
Sbjct: 1190 PWVLRIMLSKEKMIERNINMLEIKTSFCRNWGTRNEDKTSKKEFNKVIDKITQCAIVTNY 1249
Query: 1190 DDSKMQDEEDAVDKMEDDM-FLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1248
D+S++ D ++ L + +++ ++GI I + + ++ +
Sbjct: 1250 DNSQVPIVHVRFDANNYNLNTLIQFQEMVINTYKIKGISNITESNNIIEES----YVDFD 1305
Query: 1249 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1308
+ G +++ +G +L ++ +D +RT NDI I+++ G+EA R + KE
Sbjct: 1306 DEGNVVKKKQYVIIAEGINLSEMSQINGIDLLRTKCNDIVTIYEMYGVEAARTAFIKEFT 1365
Query: 1309 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAA 1368
++ G + NY+H+ +L D +T G L+ + RHG N+ DT R SFE+TV+ L+ AA
Sbjct: 1366 AAIESSGGFSNYQHIEILADAITHMGGLIPVNRHGANKLDTDPFSRASFEKTVEQLLAAA 1425
Query: 1369 AHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 1409
E+D MR VS I++G L GTGCFDLLLD +K + +
Sbjct: 1426 VFGESDHMRSVSARIMVGALINGGTGCFDLLLDHKKIQQSL 1466
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 69/114 (60%)
Query: 779 VLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 838
V + R + KE ++ G + NY+H+ +L D +T G L+ + RHG N+ DT R
Sbjct: 1353 VEAARTAFIKEFTAAIESSGGFSNYQHIEILADAITHMGGLIPVNRHGANKLDTDPFSRA 1412
Query: 839 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 892
SFE+TV+ L+ AA E+D MR VS I++G L GTGCFDLLLD +K + +
Sbjct: 1413 SFEKTVEQLLAAAVFGESDHMRSVSARIMVGALINGGTGCFDLLLDHKKIQQSL 1466
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 60/100 (60%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
Q+ C+GQ VEGKRI F RTLP F K D SRGF NS++ GL P EFFF M
Sbjct: 756 GQIAGCIGQVIVEGKRIQIRFNGRTLPMFPKFDDSAFSRGFCRNSFIEGLGPFEFFFQVM 815
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQN 1108
GREG+I+TA+KTA+T + L ++ + YD +N
Sbjct: 816 AGREGIINTAIKTADTGYIQRKLVKMLEDIKQEYDGTVRN 855
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
T+ KE ++ G + NY+H+ +L D +T G L+ + RHG N+ DT R SFE+T
Sbjct: 1358 TAFIKEFTAAIESSGGFSNYQHIEILADAITHMGGLIPVNRHGANKLDTDPFSRASFEKT 1417
Query: 575 VDVLMDAAAHAEADPMRGYIQRRLIKAM 602
V+ L+ AA E+D MR R ++ A+
Sbjct: 1418 VEQLLAAAVFGESDHMRSVSARIMVGAL 1445
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 10/107 (9%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKF- 650
GYIQR+L+K +E + YD TVRN+ G+LI YG++G+ E Q+ID ++ + K
Sbjct: 832 GYIQRKLVKMLEDIKQEYDGTVRNANGKLISCVYGDNGINTENQVDQKIDLISANDNKVR 891
Query: 651 ------EDKYRFDPSNERQLRRI---FNEDVLRELMGSGDVISELEK 688
ED+ ++ N + +R N + R+L+ D + +++
Sbjct: 892 NDYVYTEDEIKYLIKNHKTDKRYTTDLNNSLYRKLISMRDQLRRIQR 938
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 30 EESIILGMDPKFARPDWMLVTVLPVPPLSVRPAV 63
E+ II+G DP +RP+ M++ PVPP+ VRP++
Sbjct: 221 EDCIIMGFDPAKSRPEDMIILNFPVPPVQVRPSI 254
>sp|P42486|RPB1_ASFB7 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (strain Badajoz 1971 Vero-adapted)
GN=Ba71V-99 PE=3 SV=1
Length = 1450
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 114/400 (28%), Positives = 182/400 (45%), Gaps = 60/400 (15%)
Query: 92 PCI--LKPKPLWTGKQVFSLIIPGN-VNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHG 148
PC P L GK V S+++ +N R + + E PY + D + +G
Sbjct: 539 PCFANYSPTDLLDGKSVVSMLLKQTPINYQRAPTWY--SEVYAPYMHYNKQDISTQIRNG 596
Query: 149 SLLMGILCKKSLGT-SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDT 207
L+ G+L KK++G SSG + H+ R YG
Sbjct: 597 ELIEGVLDKKAVGAGSSGGIYHLI---------SRRYG---------------------- 625
Query: 208 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAI 267
PQ L++ A ++ + + G ++ D + P+ + E+Q I
Sbjct: 626 ---PQQALKMIFATQQLALNYVR------------NAGFTVSTADMLLTPEAHQEVQEII 670
Query: 268 KKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFEN-QVNRILNDARDKTGGSAKKSLT-EYN 325
K + E+ + + D+ P G T +E Q+N + D+ S+ E N
Sbjct: 671 NKLLLESEEINNRLLHGDIMPPIGLTTHDFYEKLQLNAL--KFPDRILKPIMNSINPETN 728
Query: 326 NLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP--FGFRKRTLPHFIKDDYGPESRGF 383
L MV G+KGSN N+ ++A +GQ + +RI F F RTL ++ + ++ GF
Sbjct: 729 GLFQMVATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSF-GRTLVYYPRFALEAQAYGF 787
Query: 384 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNS 443
+ NSY+AGLT EF F M GR LI+ A+ T+ TGY R+ I ++S +V Y V
Sbjct: 788 ICNSYIAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFGLQSCIVDYYRRVSID 847
Query: 444 VGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRF 483
+L+Q YGEDGL +E R +T+ LS ++ EDK+++
Sbjct: 848 T-RLVQQLYGEDGLDARQLETVRFETIMLSDQELEDKFKY 886
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 145/281 (51%), Gaps = 24/281 (8%)
Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD--LNCIFNDDNAEKLVLRIRI 1186
P I+ W +R+EL++ M K +++E+I + A + ++ + N + +++RI +
Sbjct: 1168 PEDIANWCIRLELNKTTMILKSISLESIINSLRAKHPNTYIMHSVENTASGIPIIIRIYL 1227
Query: 1187 M-----NSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1241
S +++M +E + D + I + GI+ V + + D+
Sbjct: 1228 RESAFRRSTNTRMATDEKIAVNVVDKLLNSTIRG-------IPGIKNANVVKLMRHRVDA 1280
Query: 1242 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1301
+ +++ ++ + ++T+GT++ + + ++DP S+ I + ++ GIEA R+
Sbjct: 1281 QGKLVRLDN-------IYAIKTNGTNIFGAMLDDNIDPYTIVSSSIGDTMELYGIEAARQ 1333
Query: 1302 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN-RQDTGALMRCSFEET 1360
+ E+ TV+ G N+RHL + D+MT G + ++ + G+N R+ + L+R +
Sbjct: 1334 KIISEIRTVMGDKG--PNHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMALSSP 1391
Query: 1361 VDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1401
V VL DAA + +P+ G++ +MG +PR+GT D+++D
Sbjct: 1392 VQVLTDAAVDSAVNPIYGIAAPTLMGSVPRIGTMYSDIIMD 1432
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Query: 781 SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN-RQDTGALMRCS 839
+ R+ + E+ TV+ G N+RHL + D+MT G + ++ + G+N R+ + L+R +
Sbjct: 1330 AARQKIISEIRTVMGDKG--PNHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMA 1387
Query: 840 FEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
V VL DAA + +P+ G++ +MG +PR+GT D+++D
Sbjct: 1388 LSSPVQVLTDAAVDSAVNPIYGIAAPTLMGSVPRIGTMYSDIIMD 1432
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 1010 QVIACVGQQNVEGKRIP--FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
++A +GQ + +RI F F RTL ++ + ++ GF+ NSY+AGLT EF F
Sbjct: 747 HIMAGIGQIEINTQRIQPQFSF-GRTLVYYPRFALEAQAYGFICNSYIAGLTSPEFIFGE 805
Query: 1068 MGGREGLIDTAVKTAET 1084
M GR LI+ A+ T+ T
Sbjct: 806 MNGRFDLINKALSTSST 822
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 533 NYRHLALLCDVMTAKGHLMAITRHGIN-RQDTGALMRCSFEETVDVLMDAAAHAEADPMR 591
N+RHL + D+MT G + ++ + G+N R+ + L+R + V VL DAA + +P+
Sbjct: 1349 NHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMALSSPVQVLTDAAVDSAVNPIY 1408
Query: 592 GYIQRRLIKAMESVMVHY 609
G L+ ++ + Y
Sbjct: 1409 GIAAPTLMGSVPRIGTMY 1426
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GY R+ I ++S +V Y V +L+Q YGEDGL +E R +T+ LS ++ E
Sbjct: 823 GYANRKAIFGLQSCIVDYYRRVSIDT-RLVQQLYGEDGLDARQLETVRFETIMLSDQELE 881
Query: 652 DKYRF 656
DK+++
Sbjct: 882 DKFKY 886
>sp|Q8PUR2|RPOA2_METMA DNA-directed RNA polymerase subunit A'' OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=rpoA2 PE=3 SV=1
Length = 408
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 20/198 (10%)
Query: 1215 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1274
A + ++TL+GIE I KR+++ + GE ++ L T+G++L +VL
Sbjct: 217 AKSIHNVTLKGIEGI-------------KRVVVRKEGE-----EYTLYTEGSALREVLQF 258
Query: 1275 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1334
VD RT +N+I EI++VLGIEA R ++ KE L+ GL V+ RH+ L+ D+MT+ G
Sbjct: 259 EGVDRTRTSTNNINEIYEVLGIEAARNAIIKEATDTLREQGLTVDIRHIMLVADLMTSDG 318
Query: 1335 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1394
+ I RHGI+ + R +FE TV+ L+DA D ++GV+ENII+GQ RMGTG
Sbjct: 319 EVKQIGRHGISGEKASVFARAAFEVTVNHLLDAGMRGYVDQLQGVTENIIVGQPIRMGTG 378
Query: 1395 CFDLLLDAEKCKDGIEIP 1412
D+ L + K + +E+P
Sbjct: 379 --DVHLISRKAEKVVEVP 394
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 20/199 (10%)
Query: 698 QLRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREIFS-SGESNVVLPCNLMEVI 756
QL + + L+ + G V+ E E L + ALRE+ G
Sbjct: 215 QLAKSIHNVTLKGIEGIKRVVVRKEGEEYTLYTEGSALREVLQFEG-------------- 260
Query: 757 FILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 816
+ R + N N+ + +++ + + R ++ KE L+ GL V+ RH+ L+ D+MT+
Sbjct: 261 --VDRTRTSTN-NINEIYEVLGIEAARNAIIKEATDTLREQGLTVDIRHIMLVADLMTSD 317
Query: 817 GHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGT 876
G + I RHGI+ + R +FE TV+ L+DA D ++GV+ENII+GQ RMGT
Sbjct: 318 GEVKQIGRHGISGEKASVFARAAFEVTVNHLLDAGMRGYVDQLQGVTENIIVGQPIRMGT 377
Query: 877 GCFDLLLDAEKCKDGIEIP 895
G D+ L + K + +E+P
Sbjct: 378 G--DVHLISRKAEKVVEVP 394
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 519 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
KE L+ GL V+ RH+ L+ D+MT+ G + I RHGI+ + R +FE TV+ L
Sbjct: 289 KEATDTLREQGLTVDIRHIMLVADLMTSDGEVKQIGRHGISGEKASVFARAAFEVTVNHL 348
Query: 579 MDAAAHAEADPMRGYIQR 596
+DA MRGY+ +
Sbjct: 349 LDAG-------MRGYVDQ 359
>sp|P0C987|RPB1_ASFP4 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Tick/South Africa/Pretoriuskop
Pr4/1996) GN=Pret-111 PE=3 SV=1
Length = 1450
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 168/691 (24%), Positives = 295/691 (42%), Gaps = 116/691 (16%)
Query: 92 PCI--LKPKPLWTGKQVFSLIIPGN-VNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHG 148
PC P L GK V S+++ +N R + + E PY + D + +G
Sbjct: 539 PCFANYSPTDLLDGKSVVSMLLRQTPINYQRAPTWY--SEVYAPYMHYNKQDISTQIRNG 596
Query: 149 SLLMGILCKKSLGT-SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDT 207
L+ G+L KK++G SSG + H+ R YG
Sbjct: 597 ELIEGVLDKKAVGAGSSGGIYHLI---------SRRYG---------------------- 625
Query: 208 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAI 267
PQ L++ A ++ + + G ++ D + P+ + E+Q I
Sbjct: 626 ---PQQALKMIFATQQLALNYVR------------NAGFTVSTADMLLTPEAHQEVQEII 670
Query: 268 KKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFEN-QVNRILNDARDKTGGSAKKSLT-EYN 325
+ + E+ + + D+ P G T +E Q+N + D+ S+ E N
Sbjct: 671 NELLLESEEINNRLLHGDIMPPIGLTTHDFYEKLQLNAL--KFPDRILKPIMNSINPETN 728
Query: 326 NLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP--FGFRKRTLPHFIKDDYGPESRGF 383
L MV G+KGSN N+ ++A +GQ + +RI F F RTL ++ + ++ GF
Sbjct: 729 GLFQMVATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSF-GRTLVYYPRFALEAQAYGF 787
Query: 384 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNS 443
+ NSY+AGLT EF F M GR LI+ A+ T+ TGY R+ I ++S +V Y V
Sbjct: 788 ICNSYIAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFGLQSCIVDYYRRVSID 847
Query: 444 VGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLRNVSSLRRVVN 503
+L+Q YGEDGL +E R +T+ LS ++ EDK+++ + P
Sbjct: 848 T-RLVQQLYGEDGLDARQLETVRFETIMLSDQELEDKFKYT-GIQSPLFEE--------- 896
Query: 504 SKPLLIGCWKLTSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 563
+ + ++K+ + Q + N+ LL DV ++ +I ++ + T
Sbjct: 897 ---------EFSRLKKDRDKYRQIFLNIENFNFSQLLTDVRQVPVNVASIVKNILLSSAT 947
Query: 564 GAL------------MRCSFEETVD-VLMDAAAHAEADPMRGYIQR-----RLIKAMESV 605
G L M +F + + V ++ P+ Y++R R++ +E
Sbjct: 948 GVLPFDEKTILQKYTMVKTFCKNLPYVFINNIQERLQTPIPVYLKRAASLMRMLIRIELA 1007
Query: 606 MV---HYDCTVRNSVGQLIQLRYGEDGL-CGEAVEHQRIDTVALSHKKFEDKYRFDPSNE 661
V + C +++ LI+L+Y + + GEAV A S + +Y D S+
Sbjct: 1008 TVKTLNITCEQMSAILDLIRLQYTQSLINYGEAVG----ILAAQSVSEPLTQYMLD-SHH 1062
Query: 662 RQLRRIFNEDVL---RELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVI 718
R + N+ + +E+ + V +E EM+ ++ N+ +E+ S ++I
Sbjct: 1063 RSVAGGTNKSGIVRPQEIFSAKPVEAEQSSEMLLRLKNPEVET--NKTYAQEIANSIELI 1120
Query: 719 SELEKEWEKLCEDREALREIFSSGESNVVLP 749
+ +E+L L E +SS + NV+ P
Sbjct: 1121 T-----FERLILQWHLLYETYSSTKKNVMYP 1146
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 145/281 (51%), Gaps = 24/281 (8%)
Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD--LNCIFNDDNAEKLVLRIRI 1186
P I+ W +R+EL++ M K +++E+I + A + ++ + N + +++RI +
Sbjct: 1168 PEDIANWCIRLELNKTTMILKSISLESIINSLRAKHPNTYIMHSVENTASGIPIIIRIYL 1227
Query: 1187 M-----NSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1241
S +++M +E + D + I + GI+ V + + D+
Sbjct: 1228 RESAFRRSTNTRMATDEKIAVNVVDKLLNSTIRG-------IPGIKNANVVKLMRHRVDA 1280
Query: 1242 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1301
+ +++ ++ + ++T+GT++ + + ++DP S+ I + ++ GIEA R+
Sbjct: 1281 QGKLVRLDN-------IYAIKTNGTNIFGAMLDDNIDPYTIVSSSIGDTMELYGIEAARQ 1333
Query: 1302 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN-RQDTGALMRCSFEET 1360
+ E+ TV+ G N+RHL + D+MT G + ++ + G+N R+ + L+R +
Sbjct: 1334 KIISEIRTVMGDKG--PNHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMALSSP 1391
Query: 1361 VDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1401
V VL DAA + +P+ G++ +MG +PR+GT D+++D
Sbjct: 1392 VQVLTDAAVDSAVNPIYGIAAPTLMGSVPRIGTMYSDIIMD 1432
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Query: 781 SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN-RQDTGALMRCS 839
+ R+ + E+ TV+ G N+RHL + D+MT G + ++ + G+N R+ + L+R +
Sbjct: 1330 AARQKIISEIRTVMGDKG--PNHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMA 1387
Query: 840 FEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
V VL DAA + +P+ G++ +MG +PR+GT D+++D
Sbjct: 1388 LSSPVQVLTDAAVDSAVNPIYGIAAPTLMGSVPRIGTMYSDIIMD 1432
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 1010 QVIACVGQQNVEGKRIP--FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
++A +GQ + +RI F F RTL ++ + ++ GF+ NSY+AGLT EF F
Sbjct: 747 HIMAGIGQIEINTQRIQPQFSF-GRTLVYYPRFALEAQAYGFICNSYIAGLTSPEFIFGE 805
Query: 1068 MGGREGLIDTAVKTAET 1084
M GR LI+ A+ T+ T
Sbjct: 806 MNGRFDLINKALSTSST 822
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 533 NYRHLALLCDVMTAKGHLMAITRHGIN-RQDTGALMRCSFEETVDVLMDAAAHAEADPMR 591
N+RHL + D+MT G + ++ + G+N R+ + L+R + V VL DAA + +P+
Sbjct: 1349 NHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMALSSPVQVLTDAAVDSAVNPIY 1408
Query: 592 GYIQRRLIKAMESVMVHY 609
G L+ ++ + Y
Sbjct: 1409 GIAAPTLMGSVPRIGTMY 1426
>sp|Q65215|RPB1_ASFM2 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=Mal-107 PE=3 SV=2
Length = 1450
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 113/400 (28%), Positives = 182/400 (45%), Gaps = 60/400 (15%)
Query: 92 PCI--LKPKPLWTGKQVFSLIIPGN-VNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHG 148
PC P L GK V S+++ +N R + + E PY + D + +G
Sbjct: 539 PCFANYSPTDLLDGKSVVSMLLKQTPINYQRAPTWY--SEVYAPYMHYNKQDISTQIRNG 596
Query: 149 SLLMGILCKKSLGT-SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDT 207
L+ G+L KK++G SSG + H+ R YG
Sbjct: 597 ELIEGVLDKKAVGAGSSGGIYHLI---------SRRYG---------------------- 625
Query: 208 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAI 267
PQ L++ A ++ + + G ++ D + P+ + E+Q I
Sbjct: 626 ---PQQALKMIFATQQLALNYVR------------NAGFTVSTADMLLTPEAHQEVQEII 670
Query: 268 KKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFEN-QVNRILNDARDKTGGSAKKSLT-EYN 325
+ + E+ + + D+ P G T +E Q+N + D+ S+ E N
Sbjct: 671 NELLLESEEINNRLLHGDIMPPIGLTTHDFYEKLQLNAL--KFPDRILKPIMNSINPETN 728
Query: 326 NLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP--FGFRKRTLPHFIKDDYGPESRGF 383
L MV G+KGSN N+ ++A +GQ + +RI F F RTL ++ + ++ GF
Sbjct: 729 GLFQMVATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSF-GRTLVYYPRFALEAQAYGF 787
Query: 384 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNS 443
+ NSY+AGLT EF F M GR LI+ A+ T+ TGY R+ I ++S +V Y V
Sbjct: 788 ICNSYIAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFGLQSCIVDYYRRVSID 847
Query: 444 VGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRF 483
+L+Q YGEDGL +E R +T+ LS ++ EDK+++
Sbjct: 848 T-RLVQQLYGEDGLDARQLETVRFETIMLSDQELEDKFKY 886
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 144/281 (51%), Gaps = 24/281 (8%)
Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD--LNCIFNDDNAEKLVLRIRI 1186
P I+ W +R+EL++ M K +++E+I + A + ++ + N + +++RI +
Sbjct: 1168 PEDIANWCIRLELNKTTMILKSISLESIINSLRAKHPNSYIMHSVENTASGIPIIIRIYL 1227
Query: 1187 M-----NSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1241
S +++M +E M D + I + GI+ V + + D+
Sbjct: 1228 RESAFRRSTNTRMATDEKIAVNMVDKLLNSTIRG-------IPGIKNANVVKLMRHRVDA 1280
Query: 1242 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1301
+ ++ ++ + ++T+GT++ + + ++DP S+ I + ++ GIEA R+
Sbjct: 1281 QGKLARLDN-------IYAIKTNGTNIFGAMLDDNIDPYTIVSSSIGDTMELYGIEAARQ 1333
Query: 1302 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN-RQDTGALMRCSFEET 1360
+ E+ TV+ G N+RHL + D+MT G + ++ + G+N R+ + L+R +
Sbjct: 1334 KIISEIRTVMGDKG--PNHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMALSSP 1391
Query: 1361 VDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1401
V VL DAA + +P+ G++ +MG +PR+GT D+++D
Sbjct: 1392 VQVLTDAAVDSAVNPIYGIAAPTLMGSVPRIGTMYSDIIMD 1432
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Query: 781 SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN-RQDTGALMRCS 839
+ R+ + E+ TV+ G N+RHL + D+MT G + ++ + G+N R+ + L+R +
Sbjct: 1330 AARQKIISEIRTVMGDKG--PNHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMA 1387
Query: 840 FEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
V VL DAA + +P+ G++ +MG +PR+GT D+++D
Sbjct: 1388 LSSPVQVLTDAAVDSAVNPIYGIAAPTLMGSVPRIGTMYSDIIMD 1432
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 1010 QVIACVGQQNVEGKRIP--FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
++A +GQ + +RI F F RTL ++ + ++ GF+ NSY+AGLT EF F
Sbjct: 747 HIMAGIGQIEINTQRIQPQFSF-GRTLVYYPRFALEAQAYGFICNSYIAGLTSPEFIFGE 805
Query: 1068 MGGREGLIDTAVKTAET 1084
M GR LI+ A+ T+ T
Sbjct: 806 MNGRFDLINKALSTSST 822
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 533 NYRHLALLCDVMTAKGHLMAITRHGIN-RQDTGALMRCSFEETVDVLMDAAAHAEADPMR 591
N+RHL + D+MT G + ++ + G+N R+ + L+R + V VL DAA + +P+
Sbjct: 1349 NHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMALSSPVQVLTDAAVDSAVNPIY 1408
Query: 592 GYIQRRLIKAMESVMVHY 609
G L+ ++ + Y
Sbjct: 1409 GIAAPTLMGSVPRIGTMY 1426
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GY R+ I ++S +V Y V +L+Q YGEDGL +E R +T+ LS ++ E
Sbjct: 823 GYANRKAIFGLQSCIVDYYRRVSIDT-RLVQQLYGEDGLDARQLETVRFETIMLSDQELE 881
Query: 652 DKYRF 656
DK+++
Sbjct: 882 DKFKY 886
>sp|P0C988|RPB1_ASFWA Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Warthog/Namibia/Wart80/1980)
GN=War-109 PE=3 SV=1
Length = 1450
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/400 (28%), Positives = 182/400 (45%), Gaps = 60/400 (15%)
Query: 92 PCI--LKPKPLWTGKQVFSLIIPGN-VNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHG 148
PC P L GK V S+++ +N R + + E PY + D + +G
Sbjct: 539 PCFANYSPTDLLDGKSVVSMLLRQTPINYQRAPTWY--SEVYAPYMHYNKQDISTQIRNG 596
Query: 149 SLLMGILCKKSLGT-SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDT 207
L+ G+L KK++G SSG + H+ R YG
Sbjct: 597 ELIEGVLDKKAVGAGSSGGIYHLI---------SRRYG---------------------- 625
Query: 208 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAI 267
PQ L++ A ++ + + G ++ D + P+ + E+Q I
Sbjct: 626 ---PQQALKMIFATQQLALNYVR------------NAGFTVSTADMLLTPEAHQEVQEII 670
Query: 268 KKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFEN-QVNRILNDARDKTGGSAKKSLT-EYN 325
+ + E+ + + D+ P G T +E Q+N + D+ S+ E N
Sbjct: 671 NELLLESEEINNRLLHGDIMPPIGLTTHDFYEKLQLNAL--KFPDRILKPIMNSINPETN 728
Query: 326 NLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP--FGFRKRTLPHFIKDDYGPESRGF 383
L MV G+KGSN N+ ++A +GQ + +RI F F RTL ++ + ++ GF
Sbjct: 729 GLFQMVATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSF-GRTLVYYPRFALEAQAYGF 787
Query: 384 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNS 443
+ NSY+AGLT EF F M GR LI+ A+ T+ TGY R+ I ++S +V Y V
Sbjct: 788 ICNSYIAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFGLQSCIVDYYRRVSID 847
Query: 444 VGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRF 483
+L+Q YGEDGL +E R +T+ LS ++ EDK+++
Sbjct: 848 T-RLVQQLYGEDGLDARQLETVRFETIMLSDQELEDKFKY 886
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 145/281 (51%), Gaps = 24/281 (8%)
Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD--LNCIFNDDNAEKLVLRIRI 1186
P I+ W +R+EL++ M K +++E+I + A + ++ + N + +++RI +
Sbjct: 1168 PEDIANWCIRLELNKTTMILKSISLESIINSLRAKHPNTYIMHSVENTASGIPIIIRIYL 1227
Query: 1187 M-----NSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1241
S +++M +E + D + I + GI+ V + + D+
Sbjct: 1228 RESAFRRSTNTRMATDEKIAVNVVDKLLNSTIRG-------IPGIKNANVVKLMRHRVDA 1280
Query: 1242 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1301
+ +++ ++ + ++T+GT++ + + ++DP S+ I + ++ GIEA R+
Sbjct: 1281 QGKLVRLDN-------IYAIKTNGTNIFGAMLDDNIDPYTIVSSSIGDTMELYGIEAARQ 1333
Query: 1302 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN-RQDTGALMRCSFEET 1360
+ E+ TV+ G N+RHL + D+MT G + ++ + G+N R+ + L+R +
Sbjct: 1334 KIISEIRTVMGDKG--PNHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMALSSP 1391
Query: 1361 VDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1401
V VL DAA + +P+ G++ +MG +PR+GT D+++D
Sbjct: 1392 VQVLTDAAVDSAVNPIYGIAAPTLMGSVPRIGTMYSDIIMD 1432
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Query: 781 SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN-RQDTGALMRCS 839
+ R+ + E+ TV+ G N+RHL + D+MT G + ++ + G+N R+ + L+R +
Sbjct: 1330 AARQKIISEIRTVMGDKG--PNHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMA 1387
Query: 840 FEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
V VL DAA + +P+ G++ +MG +PR+GT D+++D
Sbjct: 1388 LSSPVQVLTDAAVDSAVNPIYGIAAPTLMGSVPRIGTMYSDIIMD 1432
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 1010 QVIACVGQQNVEGKRIP--FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
++A +GQ + +RI F F RTL ++ + ++ GF+ NSY+AGLT EF F
Sbjct: 747 HIMAGIGQIEINTQRIQPQFSF-GRTLVYYPRFALEAQAYGFICNSYIAGLTSPEFIFGE 805
Query: 1068 MGGREGLIDTAVKTAET 1084
M GR LI+ A+ T+ T
Sbjct: 806 MNGRFDLINKALSTSST 822
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 533 NYRHLALLCDVMTAKGHLMAITRHGIN-RQDTGALMRCSFEETVDVLMDAAAHAEADPMR 591
N+RHL + D+MT G + ++ + G+N R+ + L+R + V VL DAA + +P+
Sbjct: 1349 NHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMALSSPVQVLTDAAVDSAVNPIY 1408
Query: 592 GYIQRRLIKAMESVMVHY 609
G L+ ++ + Y
Sbjct: 1409 GIAAPTLMGSVPRIGTMY 1426
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GY R+ I ++S +V Y V +L+Q YGEDGL +E R +T+ LS ++ E
Sbjct: 823 GYANRKAIFGLQSCIVDYYRRVSIDT-RLVQQLYGEDGLDARQLETVRFETIMLSDQELE 881
Query: 652 DKYRF 656
DK+++
Sbjct: 882 DKFKY 886
>sp|P0C989|RPB1_ASFK5 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Pig/Kenya/KEN-50/1950)
GN=Ken-111 PE=3 SV=1
Length = 1450
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/400 (28%), Positives = 182/400 (45%), Gaps = 60/400 (15%)
Query: 92 PCI--LKPKPLWTGKQVFSLIIPGN-VNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHG 148
PC P L GK V S+++ +N R + + E PY + D + +G
Sbjct: 539 PCFANYSPTDLLDGKLVVSMLLKQTPINYQRAPTWY--SEVYAPYMHYNKQDISTQIRNG 596
Query: 149 SLLMGILCKKSLGT-SSGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDT 207
L+ G+L KK++G SSG + H+ R YG
Sbjct: 597 ELIEGVLDKKAVGAGSSGGIYHLI---------SRRYG---------------------- 625
Query: 208 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAI 267
PQ L++ A ++ + + G ++ D + P+ + E+Q I
Sbjct: 626 ---PQQALKMIFATQQLALNYVR------------NAGFTVSTADMLLTPEAHQEVQEII 670
Query: 268 KKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFEN-QVNRILNDARDKTGGSAKKSLT-EYN 325
+ + E+ + + D+ P G T +E Q+N + D+ S+ E N
Sbjct: 671 NELLLESEEINNRLLHGDIMPPIGLTTHDFYEKLQLNAL--KFPDRILKPIMNSINPETN 728
Query: 326 NLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP--FGFRKRTLPHFIKDDYGPESRGF 383
L MV G+KGSN N+ ++A +GQ + +RI F F RTL ++ + ++ GF
Sbjct: 729 GLFQMVATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSF-GRTLVYYPRFALEAQAYGF 787
Query: 384 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNS 443
+ NSY+AGLT EF F M GR LI+ A+ T+ TGY R+ I ++S +V Y V
Sbjct: 788 ICNSYIAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFGLQSCIVDYYRRVSID 847
Query: 444 VGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRF 483
+L+Q YGEDGL +E R +T+ LS ++ EDK+++
Sbjct: 848 T-RLVQQLYGEDGLDARQLETVRFETIMLSDQELEDKFKY 886
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 145/281 (51%), Gaps = 24/281 (8%)
Query: 1129 PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDD--LNCIFNDDNAEKLVLRIRI 1186
P I+ W +R+EL++ M K +++E+I + A + ++ + N + +++RI +
Sbjct: 1168 PEDIANWCIRLELNKTTMILKSISLESIVNSLRAKHPNTYIMHSVENTASGIPIIIRIYL 1227
Query: 1187 M-----NSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1241
S +++M +E + D + I + GI+ V + + D+
Sbjct: 1228 RESAFRRSTNTRMATDEKIAVNLVDKLLNSTIRG-------IPGIKNANVVKLMRHRVDA 1280
Query: 1242 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1301
+ +++ ++ + ++T+GT++ + + ++DP S+ I + ++ GIEA R+
Sbjct: 1281 QGKLVRLDN-------IYAIKTNGTNIFGAMLDDNIDPYTIVSSSIGDTMELYGIEAARQ 1333
Query: 1302 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN-RQDTGALMRCSFEET 1360
+ E+ TV+ G N+RHL + D+MT G + ++ + G+N R+ + L+R +
Sbjct: 1334 KIISEIRTVMGDKG--PNHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMALSSP 1391
Query: 1361 VDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1401
V VL DAA + +P+ G++ +MG +PR+GT D+++D
Sbjct: 1392 VQVLTDAAIDSAVNPIYGIAAPTLMGSVPRIGTMYSDIIMD 1432
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Query: 781 SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN-RQDTGALMRCS 839
+ R+ + E+ TV+ G N+RHL + D+MT G + ++ + G+N R+ + L+R +
Sbjct: 1330 AARQKIISEIRTVMGDKG--PNHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMA 1387
Query: 840 FEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
V VL DAA + +P+ G++ +MG +PR+GT D+++D
Sbjct: 1388 LSSPVQVLTDAAIDSAVNPIYGIAAPTLMGSVPRIGTMYSDIIMD 1432
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 1010 QVIACVGQQNVEGKRIP--FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
++A +GQ + +RI F F RTL ++ + ++ GF+ NSY+AGLT EF F
Sbjct: 747 HIMAGIGQIEINTQRIQPQFSF-GRTLVYYPRFALEAQAYGFICNSYIAGLTSPEFIFGE 805
Query: 1068 MGGREGLIDTAVKTAET 1084
M GR LI+ A+ T+ T
Sbjct: 806 MNGRFDLINKALSTSST 822
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 533 NYRHLALLCDVMTAKGHLMAITRHGIN-RQDTGALMRCSFEETVDVLMDAAAHAEADPMR 591
N+RHL + D+MT G + ++ + G+N R+ + L+R + V VL DAA + +P+
Sbjct: 1349 NHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMALSSPVQVLTDAAIDSAVNPIY 1408
Query: 592 GYIQRRLIKAMESVMVHY 609
G L+ ++ + Y
Sbjct: 1409 GIAAPTLMGSVPRIGTMY 1426
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GY R+ I ++S +V Y V +L+Q YGEDGL +E R +T+ LS ++ E
Sbjct: 823 GYANRKAIFGLQSCIVDYYRRVSIDT-RLVQQLYGEDGLDARQLETVRFETIMLSDQELE 881
Query: 652 DKYRF 656
DK+++
Sbjct: 882 DKFKY 886
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 683,414,792
Number of Sequences: 539616
Number of extensions: 30363207
Number of successful extensions: 79799
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 72821
Number of HSP's gapped (non-prelim): 6694
length of query: 1791
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1659
effective length of database: 120,340,147
effective search space: 199644303873
effective search space used: 199644303873
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)