Your job contains 1 sequence.
>psy3015
MTTQLTPKITANHVSNTSVYAWYVVPYPYEESIILGMDPKFARPDWMLVTVLPVPPLSVR
PAVVMHGSARNQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRT
HSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVC
GRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL
EPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFEN
QVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP
FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGY
IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDK
YRFDPSNERPTLRNVSSLRRVVNSKPLLIGCWKLTSVEKEMNTVLQFYGLYVNYRHLALL
CDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGYIQRRLIK
AMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSN
ERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISE
LEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQRWKLWGNENLRFLCKIIFVL
SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF
EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM
MGGPAGMFFGSAATPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPSVAGEDQLS
KQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVIACVGQQNV
EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK
TAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIE
LDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDA
VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWL
LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY
RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS
ENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGMFFGSAATPSSIPGPPA
WYPIHIAISLLSRFTTVICIYTLKTFLEMKDFKKPPQKGFGLLTLTLMVENIHVTPRQII
TPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPEDQEFVNVYY
EMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTME
AISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIE
ETDRSFVKVDFVEPKDLVEWKTLLKQMHSDFCLAQIIKCIPTLSRHLGSDCSSNEKVRYG
KLHIPEIFFRTLIIVILLRLFLHFPLKLYGFGDIFDTRSQNGVHSRKNINS
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3015
(1791 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0003277 - symbol:RpII215 "RNA polymerase II 215kD ... 1755 0. 4
UNIPROTKB|J9NW09 - symbol:POLR2A "DNA-directed RNA polyme... 1382 4.4e-293 5
ZFIN|ZDB-GENE-041008-78 - symbol:polr2a "polymerase (RNA)... 1522 2.4e-292 4
UNIPROTKB|P24928 - symbol:POLR2A "DNA-directed RNA polyme... 1382 6.6e-291 5
MGI|MGI:98086 - symbol:Polr2a "polymerase (RNA) II (DNA d... 1382 6.6e-291 5
UNIPROTKB|F1PGS0 - symbol:POLR2A "DNA-directed RNA polyme... 1382 8.0e-291 5
RGD|1587326 - symbol:Polr2a "polymerase (RNA) II (DNA dir... 1382 8.5e-291 5
UNIPROTKB|G3MZY8 - symbol:POLR2A "DNA-directed RNA polyme... 1306 2.5e-281 5
WB|WBGene00000123 - symbol:ama-1 species:6239 "Caenorhabd... 1404 1.7e-270 4
UNIPROTKB|P16356 - symbol:ama-1 "DNA-directed RNA polymer... 1404 1.7e-270 4
DICTYBASE|DDB_G0279193 - symbol:rpb1 "RNA polymerase II c... 1002 2.6e-182 4
POMBASE|SPBC28F2.12 - symbol:rpb1 "RNA polymerase II larg... 944 1.9e-173 4
CGD|CAL0000919 - symbol:RPO21 species:5476 "Candida albic... 814 9.2e-171 5
UNIPROTKB|Q5ACI7 - symbol:RPO21 "DNA-directed RNA polymer... 814 9.2e-171 5
SGD|S000002299 - symbol:RPO21 "RNA polymerase II largest ... 783 4.7e-151 5
ASPGD|ASPL0000054301 - symbol:AN0809 species:162425 "Emer... 757 7.3e-148 5
UNIPROTKB|G4MT89 - symbol:MGG_04652 "DNA-directed RNA pol... 759 1.3e-142 5
UNIPROTKB|I3LJR4 - symbol:POLR2A "DNA-directed RNA polyme... 1046 4.5e-127 3
WB|WBGene00004411 - symbol:rpc-1 species:6239 "Caenorhabd... 530 2.2e-69 2
FB|FBgn0030687 - symbol:CG17209 species:7227 "Drosophila ... 513 1.0e-68 2
UNIPROTKB|F1NIK7 - symbol:POLR3A "DNA-directed RNA polyme... 510 1.7e-66 2
UNIPROTKB|Q5ZL98 - symbol:POLR3A "DNA-directed RNA polyme... 510 1.7e-66 2
UNIPROTKB|O14802 - symbol:POLR3A "DNA-directed RNA polyme... 509 3.6e-66 2
UNIPROTKB|E2QXD8 - symbol:POLR3A "DNA-directed RNA polyme... 509 4.4e-66 2
UNIPROTKB|J9P629 - symbol:POLR3A "DNA-directed RNA polyme... 509 4.5e-66 2
UNIPROTKB|A4IF62 - symbol:POLR3A "DNA-directed RNA polyme... 509 7.4e-66 2
DICTYBASE|DDB_G0277199 - symbol:rpc1 "RNA polymerase III,... 511 2.5e-65 3
UNIPROTKB|F1S2E6 - symbol:POLR3A "DNA-directed RNA polyme... 508 2.5e-65 2
ZFIN|ZDB-GENE-050208-103 - symbol:polr3a "polymerase (RNA... 504 4.1e-65 2
GENEDB_PFALCIPARUM|PF13_0150 - symbol:PF13_0150 "DNA-dire... 483 7.2e-65 3
UNIPROTKB|Q8IE49 - symbol:PF13_0150 "DNA-directed RNA pol... 483 7.2e-65 3
CGD|CAL0002215 - symbol:orf19.3103 species:5476 "Candida ... 478 7.3e-63 2
SGD|S000005642 - symbol:RPO31 "RNA polymerase III largest... 472 9.9e-63 2
POMBASE|SPBC651.08c - symbol:rpc1 "DNA-directed RNA polym... 475 5.7e-61 3
ASPGD|ASPL0000047704 - symbol:AN10316 species:162425 "Eme... 485 7.7e-61 3
UNIPROTKB|E9PTB6 - symbol:Polr3a "DNA-directed RNA polyme... 509 1.2e-60 2
UNIPROTKB|F1SVC3 - symbol:POLR1A "DNA-directed RNA polyme... 411 2.4e-56 3
UNIPROTKB|E1BIX2 - symbol:POLR1A "DNA-directed RNA polyme... 428 3.4e-56 4
UNIPROTKB|J9P5G4 - symbol:POLR1A "DNA-directed RNA polyme... 412 3.8e-56 3
UNIPROTKB|E2R0G4 - symbol:POLR1A "DNA-directed RNA polyme... 412 4.0e-56 3
RGD|620824 - symbol:Polr1a "polymerase (RNA) I polypeptid... 427 7.1e-56 4
UNIPROTKB|G3V7B7 - symbol:Polr1a "DNA-directed RNA polyme... 427 7.1e-56 4
MGI|MGI:1096397 - symbol:Polr1a "polymerase (RNA) I polyp... 425 1.2e-55 4
WB|WBGene00012999 - symbol:rpoa-1 species:6239 "Caenorhab... 361 6.4e-54 5
DICTYBASE|DDB_G0275759 - symbol:rpa1 "RNA polymerase I, l... 372 2.5e-53 3
FB|FBgn0019938 - symbol:RpI1 "RNA polymerase I subunit" s... 401 3.8e-50 3
POMBASE|SPBC4C3.05c - symbol:nuc1 "DNA-directed RNA polym... 383 1.0e-49 3
CGD|CAL0001661 - symbol:RPA190 species:5476 "Candida albi... 352 1.0e-48 4
UNIPROTKB|B9ZVN9 - symbol:POLR1A "DNA-directed RNA polyme... 417 1.3e-48 3
UNIPROTKB|O95602 - symbol:POLR1A "DNA-directed RNA polyme... 417 1.5e-48 3
TAIR|locus:2076661 - symbol:NRPA1 "nuclear RNA polymerase... 379 2.3e-48 3
ZFIN|ZDB-GENE-030131-5286 - symbol:polr1a "polymerase (RN... 360 9.4e-48 3
SGD|S000005868 - symbol:RPA190 "RNA polymerase I largest ... 344 2.0e-47 4
UNIPROTKB|F1NJE0 - symbol:POLR1A "DNA-directed RNA polyme... 365 3.2e-44 3
UNIPROTKB|G4NBX7 - symbol:MGG_01158 "DNA-directed RNA pol... 327 1.9e-42 3
UNIPROTKB|H9L2Z3 - symbol:H9L2Z3 "DNA-directed RNA polyme... 369 3.7e-38 3
UNIPROTKB|H9L2Z0 - symbol:H9L2Z0 "DNA-directed RNA polyme... 369 3.7e-38 2
UNIPROTKB|H9L2Z1 - symbol:H9L2Z1 "DNA-directed RNA polyme... 373 6.0e-38 2
UNIPROTKB|H9L2Z2 - symbol:H9L2Z2 "DNA-directed RNA polyme... 373 2.6e-36 3
UNIPROTKB|I3LQ53 - symbol:I3LQ53 "Uncharacterized protein... 356 3.1e-29 1
UNIPROTKB|E1C4T2 - symbol:POLR1A "Uncharacterized protein... 203 7.7e-25 2
RGD|1305574 - symbol:Polr3a "polymerase (RNA) III (DNA di... 264 4.2e-19 1
TAIR|locus:2015163 - symbol:NRPD1A "nuclear RNA polymeras... 156 1.7e-16 3
UNIPROTKB|Q6NX41 - symbol:POLR2A "DNA-directed RNA polyme... 170 2.0e-13 2
TIGR_CMR|NSE_0677 - symbol:NSE_0677 "DNA-directed RNA pol... 114 3.0e-13 5
UNIPROTKB|F1LQN7 - symbol:Polr1a "DNA-directed RNA polyme... 214 4.8e-13 1
UNIPROTKB|P37871 - symbol:rpoC "DNA-directed RNA polymera... 129 3.7e-10 5
TIGR_CMR|ECH_0951 - symbol:ECH_0951 "DNA-directed RNA pol... 130 1.1e-09 3
UNIPROTKB|P0A674 - symbol:rpoC "DNA-directed RNA polymera... 138 1.3e-09 3
TIGR_CMR|CHY_2317 - symbol:CHY_2317 "DNA-directed RNA pol... 126 3.5e-09 6
TIGR_CMR|CJE_0529 - symbol:CJE_0529 "DNA-directed RNA pol... 111 7.9e-09 3
TIGR_CMR|BA_0103 - symbol:BA_0103 "DNA-directed RNA polym... 129 2.4e-08 4
UNIPROTKB|P0A8T7 - symbol:rpoC "RNA polymerase, beta' sub... 110 3.0e-08 5
TIGR_CMR|SO_0225 - symbol:SO_0225 "DNA-directed RNA polym... 118 3.0e-08 3
TIGR_CMR|DET_0604 - symbol:DET_0604 "DNA-directed RNA pol... 119 3.6e-08 3
UNIPROTKB|Q9KV29 - symbol:rpoC "DNA-directed RNA polymera... 117 7.5e-08 3
TIGR_CMR|VC_0329 - symbol:VC_0329 "DNA-directed RNA polym... 117 7.5e-08 3
TIGR_CMR|CPS_4768 - symbol:CPS_4768 "DNA-directed RNA pol... 122 2.4e-07 5
TIGR_CMR|CBU_0232 - symbol:CBU_0232 "DNA-directed RNA pol... 121 3.1e-07 4
TIGR_CMR|SPO_3507 - symbol:SPO_3507 "DNA-directed RNA pol... 117 4.0e-07 5
TIGR_CMR|APH_1023 - symbol:APH_1023 "DNA-directed RNA pol... 118 3.8e-06 3
UNIPROTKB|P0C507 - symbol:rpoC2 "DNA-directed RNA polymer... 118 5.9e-06 3
UNIPROTKB|P0C508 - symbol:rpoC2 "DNA-directed RNA polymer... 118 5.9e-06 3
UNIPROTKB|P0C509 - symbol:rpoC2 "DNA-directed RNA polymer... 118 5.9e-06 3
UNIPROTKB|Q6ENI2 - symbol:rpoC2 "DNA-directed RNA polymer... 118 5.9e-06 3
UNIPROTKB|P11414 - symbol:POLR2A "DNA-directed RNA polyme... 125 0.00058 1
>FB|FBgn0003277 [details] [associations]
symbol:RpII215 "RNA polymerase II 215kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS;NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0005700
"polytene chromosome" evidence=IDA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
PROSITE:PS00115 SMART:SM00663 GO:GO:0007095 GO:GO:0046872
GO:GO:0003677 EMBL:AE014298 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0005703 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 GeneTree:ENSGT00700000104490 OMA:KVLPWST KO:K03006
EMBL:M27431 EMBL:M14203 EMBL:M11798 EMBL:M19537 PIR:S04457
RefSeq:NP_511124.1 UniGene:Dm.2925 ProteinModelPortal:P04052
SMR:P04052 DIP:DIP-22282N IntAct:P04052 MINT:MINT-970158
STRING:P04052 PaxDb:P04052 EnsemblMetazoa:FBtr0073542 GeneID:32100
KEGG:dme:Dmel_CG1554 CTD:32100 FlyBase:FBgn0003277
InParanoid:P04052 OrthoDB:EOG4QRFJV PhylomeDB:P04052
GenomeRNAi:32100 NextBio:776837 Bgee:P04052 GermOnline:CG1554
Uniprot:P04052
Length = 1887
Score = 1755 (622.8 bits), Expect = 0., Sum P(4) = 0.
Identities = 360/498 (72%), Positives = 389/498 (78%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
V G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWLVGEIE RFQQAQ
Sbjct: 1015 VTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQAN 1074
Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 1070
VG + P HF + G + ++ A
Sbjct: 1075 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP---KAPSL 1131
Query: 1071 REGLIDTAVKTAETV-NVL-----VFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEM 1124
L A + AE NVL L +VTANTAIYYDPDPQ TVI EDQEFVNVYYEM
Sbjct: 1132 TVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEM 1191
Query: 1125 PDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRI 1184
PDFDPTRISPWLLRIELDRKRMTDKKLTME I+EKIN GFG+DLNCIFNDDNA+KLVLRI
Sbjct: 1192 PDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRI 1251
Query: 1185 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1244
RIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR
Sbjct: 1252 RIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1311
Query: 1245 IIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVE 1304
I+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSVE
Sbjct: 1312 IVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVE 1371
Query: 1305 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 1364
KEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL
Sbjct: 1372 KEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 1431
Query: 1365 MDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATXXXXXXXXX 1424
MDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP
Sbjct: 1432 MDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGGAA 1491
Query: 1425 XXXXX-XTPSSIPGPPAW 1441
TPS P W
Sbjct: 1492 MFIGGGSTPSMTPPMTPW 1509
Score = 1141 (406.7 bits), Expect = 0., Sum P(4) = 0.
Identities = 221/245 (90%), Positives = 233/245 (95%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNR 304
GHSIGIGDTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPGNTLRQTFEN+VNR
Sbjct: 676 GHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNR 735
Query: 305 ILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
ILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNINISQVIACVGQQNVEGKRIP+GFR
Sbjct: 736 ILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFR 795
Query: 365 KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 424
KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRR
Sbjct: 796 KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRR 855
Query: 425 LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
LIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE +++FD
Sbjct: 856 LIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFD 915
Query: 485 PSNER 489
SNER
Sbjct: 916 WSNER 920
Score = 771 (276.5 bits), Expect = 5.3e-305, Sum P(4) = 5.3e-305
Identities = 136/177 (76%), Positives = 153/177 (86%)
Query: 72 QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
+EQ+MN+LMFLP WD KMPQPCILKP+PLWTGKQ+FSLIIPGNVNM RTHSTHPD+ED G
Sbjct: 549 REQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDEG 608
Query: 132 PYQWISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVV 191
PY+WISPGDTKV+VEHG L+MGI HICFLELGH++ GRFYGNIQTV+
Sbjct: 609 PYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 668
Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSI 248
NNWLL EGHSIGIGDTIADPQTY EIQ AIKKAK+DVI VIQKAHNM+LEPTPG+++
Sbjct: 669 NNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPGNTL 725
Score = 678 (243.7 bits), Expect = 9.7e-200, Sum P(4) = 9.7e-200
Identities = 138/190 (72%), Positives = 148/190 (77%)
Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
+C+I VL +VRKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413
Query: 830 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
QDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+
Sbjct: 1414 QDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCR 1473
Query: 890 DGIEIPLATXXXXXXXXXXXXXXXTPSSMSPQMTPWAQ-STPAYNALMSPG--AAMTPGG 946
GIEIP + SM+P MTPWA +TP Y PG +AMTPGG
Sbjct: 1474 FGIEIPNTLGNSMLGGAAMFIGGGSTPSMTPPMTPWANCNTPRY--FSPPGHVSAMTPGG 1531
Query: 947 PGFSPSVAGE 956
P FSPS A +
Sbjct: 1532 PSFSPSAASD 1541
Score = 406 (148.0 bits), Expect = 3.3e-149, Sum P(4) = 3.3e-149
Identities = 78/102 (76%), Positives = 87/102 (85%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+QVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAM
Sbjct: 774 SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
GGREGLIDTAVKTAET + L + + + YD +N+V
Sbjct: 834 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875
Score = 392 (143.0 bits), Expect = 1.2e-157, Sum P(4) = 1.2e-157
Identities = 75/77 (97%), Positives = 75/77 (97%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1369 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428
Query: 576 DVLMDAAAHAEADPMRG 592
DVLMDAAAHAE DPMRG
Sbjct: 1429 DVLMDAAAHAETDPMRG 1445
Score = 384 (140.2 bits), Expect = 8.6e-169, Sum P(4) = 8.6e-169
Identities = 94/175 (53%), Positives = 108/175 (61%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
L KVTANTAIYYDPDPQ TVI EDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK
Sbjct: 1158 LRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1217
Query: 1589 LTMEAISEKINAGFGDDLNTPLSP--TDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
LTME I+EKIN GFG+DLN + DK + I F D+ + D + +
Sbjct: 1218 LTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAV--DKMEDDM 1275
Query: 1647 VLRIRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEETDRSFVKVDFVEPKDLVEW 1700
LR N D +Q E A+ K+ M L + R V + E K + EW
Sbjct: 1276 FLRCIEANMLSDMTLQGIE-AIGKVY--MHLPQTDSKKR-IVITETGEFKAIGEW 1326
Score = 354 (129.7 bits), Expect = 5.3e-305, Sum P(4) = 5.3e-305
Identities = 72/125 (57%), Positives = 94/125 (75%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRLIKAMESVMV+YD TVRNSVGQLIQLRYGEDGLCGE VE Q + TV LS+K FE
Sbjct: 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFE 909
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
+++FD SNER ++++F +DV++E+ S + I ELE E W +L + + D LR++
Sbjct: 910 KRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELEAE------WDRL--VSDRDSLRQI 961
Query: 712 MGSGD 716
+G+
Sbjct: 962 FPNGE 966
Score = 196 (74.1 bits), Expect = 3.8e-50, Sum P(3) = 3.8e-50
Identities = 38/54 (70%), Positives = 44/54 (81%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDP 1542
VENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ + + + P
Sbjct: 507 VENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLP 560
Score = 185 (70.2 bits), Expect = 0., Sum P(4) = 0.
Identities = 32/71 (45%), Positives = 51/71 (71%)
Query: 694 FSWKQ---LRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPC 750
F W ++++F +DV++E+ S + I ELE EW++L DR++LR+IF +GES VVLPC
Sbjct: 914 FDWSNERLMKKVFTDDVIKEMTDSSEAIQELEAEWDRLVSDRDSLRQIFPNGESKVVLPC 973
Query: 751 NLMEVIFILQR 761
NL +I+ +Q+
Sbjct: 974 NLQRMIWNVQK 984
Score = 103 (41.3 bits), Expect = 0., Sum P(4) = 0.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 22 WYVVPY-PYEESIILGMDPKFARPDWMXXXXXXXXXXXXXXXXXMHGSARNQEQMMNIL 79
W ++ + EE ILGMDPK+ARPDWM M G+A+NQ+ + + L
Sbjct: 214 WEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 272
Score = 71 (30.1 bits), Expect = 1.2e-157, Sum P(4) = 1.2e-157
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGA----AMTPGG--PGFSPS 952
+PSS P M+P+ ++P+ + SP + A +PGG P +SPS
Sbjct: 1557 SPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSPS 1601
Score = 60 (26.2 bits), Expect = 1.7e-156, Sum P(4) = 1.7e-156
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 919 SPQMTPWAQSTPAYNALMSPGAAM-TPGGPGFSPS 952
SP ++ +P+Y+ SPG+ TPG P +SP+
Sbjct: 1755 SPTSPTYSPPSPSYDG--SPGSPQYTPGSPQYSPA 1787
Score = 53 (23.7 bits), Expect = 9.5e-156, Sum P(4) = 9.5e-156
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 916 SSMSPQMTPWAQSTPAYNALMSPGAAM--TPGGPGFSPS 952
S SP TP A++ + + SP A +P P +SPS
Sbjct: 1840 SPTSPTYTPTARNYSPTSPMYSPTAPSHYSPTSPAYSPS 1878
Score = 51 (23.0 bits), Expect = 1.5e-155, Sum P(4) = 1.5e-155
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 916 SSMSPQMTPWAQ--STPAY----NALMSPGAAMTPGGPGFSPS 952
S SP +P Q S+P++ + + SPG A +P +SP+
Sbjct: 1639 SPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPN 1681
Score = 50 (22.7 bits), Expect = 2.0e-155, Sum P(4) = 2.0e-155
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 914 TPS--SMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSP 951
TPS SP + Q +PA A G +P P +SP
Sbjct: 1724 TPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSP 1763
Score = 49 (22.3 bits), Expect = 2.5e-155, Sum P(4) = 2.5e-155
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 919 SPQMTPWA-QSTPAYNALMSPGAAM-TPGGPGFSPS 952
SPQ TP + Q +PA + SP + + +P P SPS
Sbjct: 1774 SPQYTPGSPQYSPA-SPKYSPTSPLYSPSSPQHSPS 1808
Score = 49 (22.3 bits), Expect = 2.5e-155, Sum P(4) = 2.5e-155
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 917 SMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
S SP ++ S+P+Y+ SP +P P +SP+
Sbjct: 1684 SYSPTSPSYSPSSPSYSPT-SP--CYSPTSPSYSPT 1716
Score = 48 (22.0 bits), Expect = 3.2e-155, Sum P(4) = 3.2e-155
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 916 SSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPSVAG 955
S+M+P ++ S + + MSP + +P PG SPS G
Sbjct: 1525 SAMTPGGPSFSPSAASDASGMSP--SWSPAHPGSSPSSPG 1562
Score = 46 (21.3 bits), Expect = 5.2e-155, Sum P(4) = 5.2e-155
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 916 SSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
S+ SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1676 SNYSPNSPSYSPTSPSYSP-SSP--SYSPTSPCYSPT 1709
Score = 46 (21.3 bits), Expect = 5.2e-155, Sum P(4) = 5.2e-155
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSP 951
T S SP ++ ++P Y+ SP + +P P ++P
Sbjct: 1688 TSPSYSPSSPSYSPTSPCYSPT-SP--SYSPTSPNYTP 1722
Score = 46 (21.3 bits), Expect = 5.2e-155, Sum P(4) = 5.2e-155
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 914 TPSS--MSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
+PSS SP ++ ++P+Y+ SP TP P +SP+
Sbjct: 1693 SPSSPSYSPTSPCYSPTSPSYSPT-SPN--YTPVTPSYSPT 1730
Score = 41 (19.5 bits), Expect = 1.7e-154, Sum P(4) = 1.7e-154
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 916 SSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
S SPQ +P Q +P + + +P +SPS
Sbjct: 1799 SPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPS 1835
Score = 40 (19.1 bits), Expect = 2.2e-154, Sum P(4) = 2.2e-154
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP + TP+Y SP + P +SP+
Sbjct: 1709 TSPSYSPTSPNYTPVTPSY----SPTSPNYSASPQYSPA 1743
Score = 40 (19.1 bits), Expect = 2.2e-154, Sum P(4) = 2.2e-154
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 914 TPS--SMSPQMTPWAQS-TPAYNALMSPGAAMTPGGPGFSP 951
TP S SP A +P+++ PG++ + GP SP
Sbjct: 1528 TPGGPSFSPSAASDASGMSPSWSPA-HPGSSPSSPGPSMSP 1567
Score = 39 (18.8 bits), Expect = 2.8e-154, Sum P(4) = 2.8e-154
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 916 SSMSPQMTP----WAQSTPAYNALMSPGAAMTPGGPGFS 950
S SP TP ++ ++P Y+A SP +P P +S
Sbjct: 1714 SPTSPNYTPVTPSYSPTSPNYSA--SP--QYSPASPAYS 1748
Score = 38 (18.4 bits), Expect = 3.6e-154, Sum P(4) = 3.6e-154
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 916 SSMSPQMTPWA-QSTPAYNALMSPGAAMTPGGPGFSPSVA 954
S SP +P + Q +P+ N G+ + P +SP+++
Sbjct: 1792 SPTSPLYSPSSPQHSPS-NQYSPTGSTYSATSPRYSPNMS 1830
>UNIPROTKB|J9NW09 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 EMBL:AAEX03003616 EMBL:AAEX03003617
Ensembl:ENSCAFT00000050029 Uniprot:J9NW09
Length = 1789
Score = 1382 (491.5 bits), Expect = 4.4e-293, Sum P(5) = 4.4e-293
Identities = 263/354 (74%), Positives = 301/354 (85%)
Query: 1091 LFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1150
L +VTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225
Query: 1151 LTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFL 1210
LTME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FL
Sbjct: 1226 LTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFL 1285
Query: 1211 RCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMK 1270
RCIE+NML+DMTLQGIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+
Sbjct: 1286 RCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMR 1345
Query: 1271 VLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVM 1330
VLSE+DVDPVRT SNDI EIF VLGIEAVRK++E+E+ V+ F G YVNYRHLALLCD M
Sbjct: 1346 VLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTM 1405
Query: 1331 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 1390
T +GHLMAITRHG+NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL
Sbjct: 1406 TCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAP 1465
Query: 1391 MGTGCFDLLLDAEKCKDGIEIPLATXXXXXXXXXXXXXXXTPSSIPG-PPAWYP 1443
GTGCFDLLLDAEKCK G+EIP PS + G PA P
Sbjct: 1466 AGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTP 1519
Score = 1045 (372.9 bits), Expect = 4.4e-293, Sum P(5) = 4.4e-293
Identities = 214/315 (67%), Positives = 250/315 (79%)
Query: 185 GNIQTVVNNWLLLEG----HSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 240
G+ + VV N L+ G S+G +YLE+ + + I+ + +N L
Sbjct: 624 GDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTV--INNWLL 681
Query: 241 EPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFEN 300
GH+IGIGD+IAD +TY +IQ IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFEN
Sbjct: 682 --IEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFEN 739
Query: 301 QVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP 360
QVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIP
Sbjct: 740 QVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799
Query: 361 FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGY 420
FGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGY
Sbjct: 800 FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859
Query: 421 IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDK 480
IQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+ S+K FE K
Sbjct: 860 IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKK 919
Query: 481 YRFDPSNERPTLRNV 495
+RFD +NER R +
Sbjct: 920 FRFDYTNERALRRTL 934
Score = 660 (237.4 bits), Expect = 4.1e-268, Sum P(5) = 4.1e-268
Identities = 118/175 (67%), Positives = 144/175 (82%)
Query: 74 QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
++MN+LMFL WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618
Query: 134 QWISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNN 193
+ ISPGDTKVVVE+G L+MGI HI +LE+GH+V FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINN 678
Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSI 248
WLL+EGH+IGIGD+IAD +TY +IQ IKKAK+DVIEVI+KAHN +LEPTPG+++
Sbjct: 679 WLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTL 733
Score = 585 (211.0 bits), Expect = 2.4e-163, Sum P(3) = 2.4e-163
Identities = 140/313 (44%), Positives = 187/313 (59%)
Query: 664 LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
L IFN+D VLR +M S + + E+E+VD R ++L ++ G
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300
Query: 718 ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
I ++ K + L + D + I GE +L + + ++ +L + +
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360
Query: 769 NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
++ + ++ + +VRK++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420
Query: 829 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480
Query: 889 KDGIEIPLATXXXXXXXXXXXXXXXTPSSM---SPQMTPWAQ-STPAYNALM-SPGAAMT 943
K G+EIP PS M SP MTPW Q +TPAY A S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540
Query: 944 PGGPGFSPSVAGE 956
PG GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553
Score = 390 (142.3 bits), Expect = 7.8e-132, Sum P(4) = 7.8e-132
Identities = 94/198 (47%), Positives = 122/198 (61%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAM
Sbjct: 782 SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM 841
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV-------IPEDQ---EFV 1118
GGREGLIDTAVKTAET + L + + + YD +N++ ED E V
Sbjct: 842 GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV 901
Query: 1119 NVYYEMPDFDPT-RISPWLLRIELDRKRMTDKKLTMEAISEKI-NAGFGDDLNCIFNDDN 1176
+ + P+ + R + +R + L + + + + NA ++L F
Sbjct: 902 E-FQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR 960
Query: 1177 AEKLVLRIRIMNSDDSKM 1194
++ VLR+ I + DSK+
Sbjct: 961 EDREVLRV-IFPTGDSKV 977
Score = 356 (130.4 bits), Expect = 1.2e-167, Sum P(5) = 1.2e-167
Identities = 66/79 (83%), Positives = 73/79 (92%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225
Query: 1589 LTMEAISEKINAGFGDDLN 1607
LTME I+EKINAGFGDDLN
Sbjct: 1226 LTMEQIAEKINAGFGDDLN 1244
Score = 317 (116.6 bits), Expect = 4.0e-136, Sum P(4) = 4.0e-136
Identities = 57/77 (74%), Positives = 68/77 (88%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436
Query: 576 DVLMDAAAHAEADPMRG 592
DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453
Score = 315 (115.9 bits), Expect = 4.1e-268, Sum P(5) = 4.1e-268
Identities = 64/125 (51%), Positives = 92/125 (73%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+ S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
K+RFD +NER LRR ED++++++ + + +ELE+E ++++R + +VLR +
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELERE------FERMRE--DREVLRVI 969
Query: 712 MGSGD 716
+GD
Sbjct: 970 FPTGD 974
Score = 313 (115.2 bits), Expect = 4.0e-163, Sum P(5) = 4.0e-163
Identities = 58/68 (85%), Positives = 66/68 (97%)
Query: 1613 TDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMED 1672
TD+KLTME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+D
Sbjct: 1222 TDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDD 1281
Query: 1673 DMFLRCIE 1680
D+FLRCIE
Sbjct: 1282 DVFLRCIE 1289
Score = 190 (71.9 bits), Expect = 4.4e-293, Sum P(5) = 4.4e-293
Identities = 36/57 (63%), Positives = 47/57 (82%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA 1009
V G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQA 1079
Score = 167 (63.8 bits), Expect = 4.4e-293, Sum P(5) = 4.4e-293
Identities = 31/75 (41%), Positives = 54/75 (72%)
Query: 687 EKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREIFSSGESNV 746
+K D+ + + LRR ED++++++ + + +ELE+E+E++ EDRE LR IF +G+S V
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRVIFPTGDSKV 977
Query: 747 VLPCNLMEVIFILQR 761
VLPCNL+ +I+ Q+
Sbjct: 978 VLPCNLLRMIWNAQK 992
Score = 166 (63.5 bits), Expect = 1.7e-43, Sum P(3) = 1.7e-43
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515 IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557
Score = 97 (39.2 bits), Expect = 4.4e-293, Sum P(5) = 4.4e-293
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 30 EESIILGMDPKFARPDWMXXXXXXXXXXXXXXXXXMHGSARNQEQMMNIL 79
EE +LGM+P++ARP+WM M GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280
Score = 54 (24.1 bits), Expect = 4.0e-136, Sum P(4) = 4.0e-136
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
+P +PQ ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1604 SPGGYTPQSPSYSPTSPSYSPT-SP--SYSPTSPNYSPT 1639
Score = 50 (22.7 bits), Expect = 1.1e-135, Sum P(4) = 1.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1709 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1744
Score = 50 (22.7 bits), Expect = 1.1e-135, Sum P(4) = 1.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1702 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1737
Score = 50 (22.7 bits), Expect = 1.1e-135, Sum P(4) = 1.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1695 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1730
Score = 50 (22.7 bits), Expect = 1.1e-135, Sum P(4) = 1.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1688 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1723
Score = 50 (22.7 bits), Expect = 1.1e-135, Sum P(4) = 1.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1681 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1716
Score = 50 (22.7 bits), Expect = 1.1e-135, Sum P(4) = 1.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1674 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1709
Score = 50 (22.7 bits), Expect = 1.1e-135, Sum P(4) = 1.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1667 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1702
Score = 50 (22.7 bits), Expect = 1.1e-135, Sum P(4) = 1.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1660 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1695
Score = 50 (22.7 bits), Expect = 1.1e-135, Sum P(4) = 1.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1653 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1688
Score = 50 (22.7 bits), Expect = 1.1e-135, Sum P(4) = 1.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1646 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1681
Score = 50 (22.7 bits), Expect = 1.1e-135, Sum P(4) = 1.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1639 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1674
Score = 49 (22.3 bits), Expect = 1.3e-135, Sum P(4) = 1.3e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1625 TSPSYSPTSPNYSPTSPSYSPT-SP--SYSPTSPSYSPT 1660
Score = 48 (22.0 bits), Expect = 1.7e-135, Sum P(4) = 1.7e-135
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALM---SPGAA-MTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP TP P +SP+
Sbjct: 1723 TSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPT 1765
Score = 47 (21.6 bits), Expect = 2.2e-135, Sum P(4) = 2.2e-135
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1632 TSPNYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1667
Score = 47 (21.6 bits), Expect = 2.2e-135, Sum P(4) = 2.2e-135
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P Y+ SP + +P P +SP+
Sbjct: 1618 TSPSYSPTSPSYSPTSPNYSPT-SP--SYSPTSPSYSPT 1653
Score = 44 (20.5 bits), Expect = 4.5e-135, Sum P(4) = 4.5e-135
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 923 TPWAQSTPAYNA--LMSPGAAMTPGGPGFSPS 952
TP + +P ++ + SPG AM+P SP+
Sbjct: 1568 TPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPA 1599
Score = 44 (20.5 bits), Expect = 4.5e-135, Sum P(4) = 4.5e-135
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 914 TPSS--MSPQMTPWAQS-TPAYNALMSPGAAMTPGGPGFSP 951
TP + SP A +P Y+ SP TPG PG SP
Sbjct: 1540 TPGAAGFSPSAASDASGFSPGYSPAWSP----TPGSPG-SP 1575
Score = 44 (20.5 bits), Expect = 4.5e-135, Sum P(4) = 4.5e-135
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
TP+S P +P ++P+Y+ SP TP P +SP+
Sbjct: 1756 TPTS--PSYSP---TSPSYSPT-SPN--YTPMSPNYSPT 1786
Score = 43 (20.2 bits), Expect = 3.3e-152, Sum P(5) = 3.3e-152
Identities = 24/94 (25%), Positives = 38/94 (40%)
Query: 1160 INAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDS-KMQDEEDAVDKMEDDMFLRCIEANML 1218
IN DL+ I + ++L ++ I+N DD Q +E+A + M
Sbjct: 996 INPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMA 1055
Query: 1219 SDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGE 1252
+ L G EA + L + +SK I GE
Sbjct: 1056 EEFRLSG-EAFDWL---LGEIESKFNQAIAHPGE 1085
Score = 40 (19.1 bits), Expect = 6.6e-119, Sum P(4) = 6.6e-119
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 1626 INAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDS-KMQDEEDA 1666
IN DL+ I + ++L ++ I+N DD Q +E+A
Sbjct: 996 INPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENA 1037
Score = 37 (18.1 bits), Expect = 9.2e-287, Sum P(5) = 9.2e-287
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 174 ELGHEVCGRFYGNIQ 188
E GH CGR+ I+
Sbjct: 178 EKGHGGCGRYQPRIR 192
Score = 37 (18.1 bits), Expect = 4.4e-30, Sum P(3) = 4.4e-30
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 1469 MKDFKKPPQKGFGLLTLTLMVENIHVTPRQIITPQNN 1505
+K K+ + G + LM + + + R +ITP N
Sbjct: 336 LKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPN 372
>ZFIN|ZDB-GENE-041008-78 [details] [associations]
symbol:polr2a "polymerase (RNA) II (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 ZFIN:ZDB-GENE-041008-78 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0005665 GeneTree:ENSGT00700000104490 EMBL:AL929346
IPI:IPI00608319 Ensembl:ENSDART00000077495 Bgee:F1Q9K4
Uniprot:F1Q9K4
Length = 1965
Score = 1522 (540.8 bits), Expect = 2.4e-292, Sum P(4) = 2.4e-292
Identities = 315/504 (62%), Positives = 373/504 (74%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
V G+DQLS+QA ENATLLF +RSTLC+K + E +RLS+EAF+WL+GEIE +F Q+ I
Sbjct: 1020 VNGDDQLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQS--I 1077
Query: 1013 ACVGQQ--NVEGKRIPFGFRKRTLP--HFIKDDYGPESRGFVENSYLAGL-----TPSEF 1063
A G+ + + + + TL H+ + G L + TPS
Sbjct: 1078 AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLT 1137
Query: 1064 FF---HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNV 1120
F A E D + T L +VTANTAIYYDP+PQNTV+ EDQE+VNV
Sbjct: 1138 VFLLGQAARDAERAKDILCRLEHTT-----LRKVTANTAIYYDPNPQNTVVTEDQEWVNV 1192
Query: 1121 YYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1180
YYEMPDFD TRISPWLLRIELDRK MTD+KLTME I+EKINAGFGDDLNCIFNDDNAEKL
Sbjct: 1193 YYEMPDFDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1252
Query: 1181 VLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD 1240
VLRIRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD
Sbjct: 1253 VLRIRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTD 1312
Query: 1241 SKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVR 1300
+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVR
Sbjct: 1313 NKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVR 1372
Query: 1301 KSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1360
K++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHGINRQDTG LM+CSFEET
Sbjct: 1373 KALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEET 1432
Query: 1361 VDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATXXXXX 1420
VDVLM+A++H E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP
Sbjct: 1433 VDVLMEASSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISV 1492
Query: 1421 XXXXXXXXXXTPSSIPG-PPAWYP 1443
PS + G PA P
Sbjct: 1493 AGPTGMFFGSAPSPMSGMSPAMTP 1516
Score = 1061 (378.5 bits), Expect = 2.4e-292, Sum P(4) = 2.4e-292
Identities = 224/340 (65%), Positives = 260/340 (76%)
Query: 185 GNIQTVVNNWLLLEG----HSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 240
G+ + +V N L+ G S+G +YLE+ I + I+ + +N L
Sbjct: 621 GDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTV--VNNWLL 678
Query: 241 EPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFEN 300
GHSIGIGD+IAD TY +IQ IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFEN
Sbjct: 679 --IEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFEN 736
Query: 301 QVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP 360
QVNRILNDARDKTG SA+KSL+EYNN K+MVVAGSKGS INISQVIA VGQQNVEGKRIP
Sbjct: 737 QVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIP 796
Query: 361 FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGY 420
FGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGY
Sbjct: 797 FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 856
Query: 421 IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDK 480
IQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GEAVE Q + T+ SHK FE K
Sbjct: 857 IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNMATLKPSHKAFEKK 916
Query: 481 YRFDPSNERPTLRNVSSLRRVVNSKPLLIGCWKLTSVEKE 520
++FD +NER R + VV K ++ +S+E+E
Sbjct: 917 FKFDYANERALRRTLQE--DVV--KDVMTNAHVQSSLERE 952
Score = 654 (235.3 bits), Expect = 1.2e-265, Sum P(4) = 1.2e-265
Identities = 117/175 (66%), Positives = 143/175 (81%)
Query: 74 QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
++MN+LMFL WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N RTHSTHPD+EDSGPY
Sbjct: 556 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINAIRTHSTHPDEEDSGPY 615
Query: 134 QWISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNN 193
+ ISPGDTKV+VE+G L+MGI HI +LE+GH++ FY NIQTVVNN
Sbjct: 616 KNISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNN 675
Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSI 248
WLL+EGHSIGIGD+IAD TY +IQ IKKAK+DVIEVI+KAHN +LEPTPG+++
Sbjct: 676 WLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTL 730
Score = 572 (206.4 bits), Expect = 1.1e-164, Sum P(3) = 1.1e-164
Identities = 137/313 (43%), Positives = 186/313 (59%)
Query: 664 LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
L IFN+D VLR +M S + + ++E+VD R ++L ++ G
Sbjct: 1240 LNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1297
Query: 718 ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
I ++ K + L + D + I GE +L + + ++ +L + +
Sbjct: 1298 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1357
Query: 769 NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
++ + ++ + +VRK++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHGIN
Sbjct: 1358 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGIN 1417
Query: 829 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
RQDTG LM+CSFEETVDVLM+A++H E+DPM+GVSENI++GQL GTGCFDLLLDAEKC
Sbjct: 1418 RQDTGPLMKCSFEETVDVLMEASSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1477
Query: 889 KDGIEIPLATXXXXXXXXXXXXXXXTPS---SMSPQMTPW-AQSTPAYNALM-SPGAAMT 943
K G+EIP PS MSP MTPW +TPAY A S G+ MT
Sbjct: 1478 KYGMEIPTNIPGISVAGPTGMFFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMT 1537
Query: 944 PGGPGFSPSVAGE 956
PG GFSPS A +
Sbjct: 1538 PGAAGFSPSAASD 1550
Score = 390 (142.3 bits), Expect = 9.1e-133, Sum P(5) = 9.1e-133
Identities = 76/113 (67%), Positives = 89/113 (78%)
Query: 998 LVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 1057
+ G ++ +QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAG
Sbjct: 768 VAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAG 827
Query: 1058 LTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
LTP+EFFFHAMGGREGLIDTAVKTAET + L + + + YD +N++
Sbjct: 828 LTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI 880
Score = 367 (134.2 bits), Expect = 3.0e-156, Sum P(5) = 3.0e-156
Identities = 69/79 (87%), Positives = 74/79 (93%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
L KVTANTAIYYDP+PQNTV+ EDQE+VNVYYEMPDFD TRISPWLLRIELDRK MTD+K
Sbjct: 1163 LRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDFDVTRISPWLLRIELDRKHMTDRK 1222
Query: 1589 LTMEAISEKINAGFGDDLN 1607
LTME I+EKINAGFGDDLN
Sbjct: 1223 LTMEQIAEKINAGFGDDLN 1241
Score = 324 (119.1 bits), Expect = 1.2e-265, Sum P(4) = 1.2e-265
Identities = 67/125 (53%), Positives = 91/125 (72%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GEAVE Q + T+ SHK FE
Sbjct: 855 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNMATLKPSHKAFE 914
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
K++FD +NER LRR EDV++++M + V S LE+E ++++R + ++LR +
Sbjct: 915 KKFKFDYANERALRRTLQEDVVKDVMTNAHVQSSLERE------FEKMRE--DREILRAI 966
Query: 712 MGSGD 716
+GD
Sbjct: 967 FPTGD 971
Score = 312 (114.9 bits), Expect = 8.3e-141, Sum P(4) = 8.3e-141
Identities = 56/77 (72%), Positives = 68/77 (88%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHGINRQDTG LM+CSFEETV
Sbjct: 1374 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETV 1433
Query: 576 DVLMDAAAHAEADPMRG 592
DVLM+A++H E+DPM+G
Sbjct: 1434 DVLMEASSHGESDPMKG 1450
Score = 305 (112.4 bits), Expect = 9.6e-150, Sum P(5) = 9.6e-150
Identities = 56/68 (82%), Positives = 65/68 (95%)
Query: 1613 TDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMED 1672
TD+KLTME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++K Q++E+ VDKM+D
Sbjct: 1219 TDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDD 1278
Query: 1673 DMFLRCIE 1680
D+FLRCIE
Sbjct: 1279 DVFLRCIE 1286
Score = 170 (64.9 bits), Expect = 2.4e-292, Sum P(4) = 2.4e-292
Identities = 35/75 (46%), Positives = 52/75 (69%)
Query: 687 EKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREIFSSGESNV 746
+K D+ + + LRR EDV++++M + V S LE+E+EK+ EDRE LR IF +G+S V
Sbjct: 915 KKFKFDYANERALRRTLQEDVVKDVMTNAHVQSSLEREFEKMREDREILRAIFPTGDSKV 974
Query: 747 VLPCNLMEVIFILQR 761
VLPCNL +I+ Q+
Sbjct: 975 VLPCNLARMIWNAQK 989
Score = 166 (63.5 bits), Expect = 7.3e-46, Sum P(3) = 7.3e-46
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 512 IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 554
Score = 110 (43.8 bits), Expect = 2.4e-292, Sum P(4) = 2.4e-292
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 30 EESIILGMDPKFARPDWMXXXXXXXXXXXXXXXXXMHGSARNQEQMMNIL 79
EE IILGMDPK+ARP+WM M GSARNQ+ + + L
Sbjct: 228 EEDIILGMDPKYARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKL 277
Score = 79 (32.9 bits), Expect = 8.3e-141, Sum P(4) = 8.3e-141
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
+P ++SP +P ++PAY SPG TP PG+SP+
Sbjct: 1581 SPGALSPNYSP---TSPAYEP-RSPGGGYTPQSPGYSPT 1615
Score = 64 (27.6 bits), Expect = 3.1e-139, Sum P(4) = 3.1e-139
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P Y+ G+ +P PG+SP+
Sbjct: 1909 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1947
Score = 59 (25.8 bits), Expect = 1.1e-138, Sum P(4) = 1.1e-138
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ S+P Y SP TP P +SPS
Sbjct: 1790 TSPSYSPTSPSYSPSSPRYTP-QSP--TYTPSSPSYSPS 1825
Score = 54 (24.1 bits), Expect = 3.5e-138, Sum P(4) = 3.5e-138
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 914 TPSS--MSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
TP S +P ++ S+P+Y+ SP TP P +SPS
Sbjct: 1809 TPQSPTYTPSSPSYSPSSPSYSPT-SP--KYTPTSPSYSPS 1846
Score = 53 (23.7 bits), Expect = 4.5e-138, Sum P(4) = 4.5e-138
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP TP P +SP+
Sbjct: 1755 TSPSYSPTSPSYSPTSPSYSPT-SPN--YTPTSPNYSPT 1790
Score = 53 (23.7 bits), Expect = 4.5e-138, Sum P(4) = 4.5e-138
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP TP P +SP+
Sbjct: 1727 TSPSYSPTSPSYSPTSPSYSPT-SPN--YTPTSPSYSPT 1762
Score = 50 (22.7 bits), Expect = 9.3e-138, Sum P(4) = 9.3e-138
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1713 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1748
Score = 50 (22.7 bits), Expect = 9.3e-138, Sum P(4) = 9.3e-138
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1706 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1741
Score = 50 (22.7 bits), Expect = 9.3e-138, Sum P(4) = 9.3e-138
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1699 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1734
Score = 50 (22.7 bits), Expect = 9.3e-138, Sum P(4) = 9.3e-138
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1692 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1727
Score = 50 (22.7 bits), Expect = 9.3e-138, Sum P(4) = 9.3e-138
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1685 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1720
Score = 50 (22.7 bits), Expect = 9.3e-138, Sum P(4) = 9.3e-138
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1678 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1713
Score = 50 (22.7 bits), Expect = 9.3e-138, Sum P(4) = 9.3e-138
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1671 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1706
Score = 50 (22.7 bits), Expect = 9.3e-138, Sum P(4) = 9.3e-138
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1664 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1699
Score = 50 (22.7 bits), Expect = 9.3e-138, Sum P(4) = 9.3e-138
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1657 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1692
Score = 50 (22.7 bits), Expect = 9.3e-138, Sum P(4) = 9.3e-138
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1650 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1685
Score = 50 (22.7 bits), Expect = 9.3e-138, Sum P(4) = 9.3e-138
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1643 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1678
Score = 50 (22.7 bits), Expect = 9.3e-138, Sum P(4) = 9.3e-138
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1636 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1671
Score = 49 (22.3 bits), Expect = 1.2e-137, Sum P(4) = 1.2e-137
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1622 TSPSYSPTSPNYSPTSPSYSPT-SP--SYSPTSPSYSPT 1657
Score = 48 (22.0 bits), Expect = 1.5e-137, Sum P(4) = 1.5e-137
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP + ++P+Y+ SP + +P P +SP+
Sbjct: 1741 TSPSYSPTSPNYTPTSPSYSPT-SP--SYSPTSPSYSPT 1776
Score = 47 (21.6 bits), Expect = 1.9e-137, Sum P(4) = 1.9e-137
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1629 TSPNYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1664
Score = 47 (21.6 bits), Expect = 1.9e-137, Sum P(4) = 1.9e-137
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P Y+ SP + +P P +SP+
Sbjct: 1615 TSPSYSPTSPSYSPTSPNYSPT-SP--SYSPTSPSYSPT 1650
Score = 46 (21.3 bits), Expect = 2.4e-137, Sum P(4) = 2.4e-137
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 919 SPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
+PQ ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1606 TPQSPGYSPTSPSYSPT-SP--SYSPTSPNYSPT 1636
Score = 46 (21.3 bits), Expect = 2.4e-137, Sum P(4) = 2.4e-137
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P Y SP + +P P +SP+
Sbjct: 1734 TSPSYSPTSPSYSPTSPNYTPT-SP--SYSPTSPSYSPT 1769
Score = 46 (21.3 bits), Expect = 2.4e-137, Sum P(4) = 2.4e-137
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 914 TPSS--MSPQMTPWAQS-TPAYNALMSPGAAMTPGGPGFSPSVA 954
TP + SP A +P Y+ SP TPG PG SP A
Sbjct: 1537 TPGAAGFSPSAASDASGFSPGYSPAWSP----TPGSPG-SPGPA 1575
Score = 45 (20.9 bits), Expect = 3.1e-137, Sum P(4) = 3.1e-137
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P Y SP +P P +SP+
Sbjct: 1762 TSPSYSPTSPSYSPTSPNYTPT-SPN--YSPTSPSYSPT 1797
Score = 44 (20.5 bits), Expect = 3.0e-156, Sum P(5) = 3.0e-156
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 1159 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDS-KMQDEEDA 1200
+IN DLN D ++L ++ I+N DD Q +E+A
Sbjct: 992 RINPRAPTDLNPARVVDGVKELSKKLVIVNGDDQLSRQAQENA 1034
Score = 44 (20.5 bits), Expect = 3.2e-122, Sum P(4) = 3.2e-122
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 1625 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDS-KMQDEEDA 1666
+IN DLN D ++L ++ I+N DD Q +E+A
Sbjct: 992 RINPRAPTDLNPARVVDGVKELSKKLVIVNGDDQLSRQAQENA 1034
Score = 39 (18.8 bits), Expect = 1.3e-136, Sum P(4) = 1.3e-136
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 916 SSMSPQMTPWAQSTPAYNALMSPGAAM----TPGG--PGFSPS 952
S SP +P TP SPG A +PG P +SP+
Sbjct: 1552 SGFSPGYSPAWSPTPGSPG--SPGPASPYIPSPGALSPNYSPT 1592
Score = 38 (18.4 bits), Expect = 6.7e-37, Sum P(4) = 6.7e-37
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 1173 NDDNAEK-LVLRIRIMNSDDSKMQDEEDAVDKME 1205
N+D+ EK ++L ++ ++ DEED + M+
Sbjct: 203 NEDSQEKKILLSPERVHEIFKRIADEEDIILGMD 236
Score = 37 (18.1 bits), Expect = 1.2e-284, Sum P(4) = 1.2e-284
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 174 ELGHEVCGRFYGNIQ 188
E GH CGR+ I+
Sbjct: 175 EKGHGGCGRYQPRIR 189
Score = 37 (18.1 bits), Expect = 1.9e-32, Sum P(3) = 1.9e-32
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 1469 MKDFKKPPQKGFGLLTLTLMVENIHVTPRQIITPQNN 1505
+K K+ + G + LM + + + R +ITP N
Sbjct: 333 LKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPN 369
>UNIPROTKB|P24928 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003677 "DNA binding" evidence=NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0006366
"transcription from RNA polymerase II promoter"
evidence=IDA;NAS;TAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] [GO:0004672 "protein kinase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0031625 "ubiquitin protein ligase binding" evidence=IPI]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 Reactome:REACT_116125
EMBL:CH471108 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006367 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 EMBL:AC113189 GO:GO:0003899 PDB:2GHQ PDB:2GHT
PDBsum:2GHQ PDBsum:2GHT eggNOG:COG0086 GO:GO:0003968 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X63564 EMBL:X74874
EMBL:X74873 EMBL:X74872 EMBL:X74871 EMBL:X74870 EMBL:BC137231
IPI:IPI00031627 PIR:I38186 PIR:S21054 RefSeq:NP_000928.1
UniGene:Hs.270017 PDB:2LTO PDBsum:2LTO ProteinModelPortal:P24928
SMR:P24928 DIP:DIP-29011N IntAct:P24928 MINT:MINT-156582
STRING:P24928 PhosphoSite:P24928 DMDM:281185484 PaxDb:P24928
PRIDE:P24928 Ensembl:ENST00000322644 GeneID:5430 KEGG:hsa:5430
UCSC:uc002ghf.4 CTD:5430 GeneCards:GC17P007387 H-InvDB:HIX0173727
HGNC:HGNC:9187 HPA:CAB012226 HPA:CAB016388 HPA:CAB022311
HPA:HPA021563 MIM:180660 neXtProt:NX_P24928 PharmGKB:PA33507
HOVERGEN:HBG004339 InParanoid:P24928 OrthoDB:EOG4JWVCM
BindingDB:P24928 ChEMBL:CHEMBL1641353 ChiTaRS:POLR2A
EvolutionaryTrace:P24928 GenomeRNAi:5430 NextBio:21009
ArrayExpress:P24928 Bgee:P24928 CleanEx:HS_POLR2A
Genevestigator:P24928 GermOnline:ENSG00000181222 Uniprot:P24928
Length = 1970
Score = 1382 (491.5 bits), Expect = 6.6e-291, Sum P(5) = 6.6e-291
Identities = 263/354 (74%), Positives = 301/354 (85%)
Query: 1091 LFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1150
L +VTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225
Query: 1151 LTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFL 1210
LTME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FL
Sbjct: 1226 LTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFL 1285
Query: 1211 RCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMK 1270
RCIE+NML+DMTLQGIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+
Sbjct: 1286 RCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMR 1345
Query: 1271 VLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVM 1330
VLSE+DVDPVRT SNDI EIF VLGIEAVRK++E+E+ V+ F G YVNYRHLALLCD M
Sbjct: 1346 VLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTM 1405
Query: 1331 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 1390
T +GHLMAITRHG+NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL
Sbjct: 1406 TCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAP 1465
Query: 1391 MGTGCFDLLLDAEKCKDGIEIPLATXXXXXXXXXXXXXXXTPSSIPG-PPAWYP 1443
GTGCFDLLLDAEKCK G+EIP PS + G PA P
Sbjct: 1466 AGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTP 1519
Score = 1046 (373.3 bits), Expect = 6.6e-291, Sum P(5) = 6.6e-291
Identities = 215/315 (68%), Positives = 250/315 (79%)
Query: 185 GNIQTVVNNWLLLEG----HSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 240
G+ + VV N L+ G S+G +YLE+ I + I+ + +N L
Sbjct: 624 GDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTV--INNWLL 681
Query: 241 EPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFEN 300
GH+IGIGD+IAD +TY +IQ IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFEN
Sbjct: 682 --IEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFEN 739
Query: 301 QVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP 360
QVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIP
Sbjct: 740 QVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799
Query: 361 FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGY 420
FGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGY
Sbjct: 800 FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859
Query: 421 IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDK 480
IQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+ S+K FE K
Sbjct: 860 IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKK 919
Query: 481 YRFDPSNERPTLRNV 495
+RFD +NER R +
Sbjct: 920 FRFDYTNERALRRTL 934
Score = 659 (237.0 bits), Expect = 1.0e-265, Sum P(5) = 1.0e-265
Identities = 117/175 (66%), Positives = 144/175 (82%)
Query: 74 QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
++MN+LMFL WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618
Query: 134 QWISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNN 193
+ ISPGDTKVVVE+G L+MGI HI +LE+GH++ FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678
Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSI 248
WLL+EGH+IGIGD+IAD +TY +IQ IKKAK+DVIEVI+KAHN +LEPTPG+++
Sbjct: 679 WLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTL 733
Score = 585 (211.0 bits), Expect = 6.1e-163, Sum P(3) = 6.1e-163
Identities = 140/313 (44%), Positives = 187/313 (59%)
Query: 664 LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
L IFN+D VLR +M S + + E+E+VD R ++L ++ G
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300
Query: 718 ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
I ++ K + L + D + I GE +L + + ++ +L + +
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360
Query: 769 NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
++ + ++ + +VRK++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420
Query: 829 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480
Query: 889 KDGIEIPLATXXXXXXXXXXXXXXXTPSSM---SPQMTPWAQ-STPAYNALM-SPGAAMT 943
K G+EIP PS M SP MTPW Q +TPAY A S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540
Query: 944 PGGPGFSPSVAGE 956
PG GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553
Score = 390 (142.3 bits), Expect = 2.1e-131, Sum P(4) = 2.1e-131
Identities = 94/198 (47%), Positives = 122/198 (61%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAM
Sbjct: 782 SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM 841
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV-------IPEDQ---EFV 1118
GGREGLIDTAVKTAET + L + + + YD +N++ ED E V
Sbjct: 842 GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV 901
Query: 1119 NVYYEMPDFDPT-RISPWLLRIELDRKRMTDKKLTMEAISEKI-NAGFGDDLNCIFNDDN 1176
+ + P+ + R + +R + L + + + + NA ++L F
Sbjct: 902 E-FQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR 960
Query: 1177 AEKLVLRIRIMNSDDSKM 1194
++ VLR+ I + DSK+
Sbjct: 961 EDREVLRV-IFPTGDSKV 977
Score = 356 (130.4 bits), Expect = 6.8e-167, Sum P(5) = 6.8e-167
Identities = 66/79 (83%), Positives = 73/79 (92%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225
Query: 1589 LTMEAISEKINAGFGDDLN 1607
LTME I+EKINAGFGDDLN
Sbjct: 1226 LTMEQIAEKINAGFGDDLN 1244
Score = 317 (116.6 bits), Expect = 1.3e-136, Sum P(4) = 1.3e-136
Identities = 57/77 (74%), Positives = 68/77 (88%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436
Query: 576 DVLMDAAAHAEADPMRG 592
DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453
Score = 315 (115.9 bits), Expect = 1.0e-265, Sum P(5) = 1.0e-265
Identities = 64/125 (51%), Positives = 92/125 (73%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+ S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
K+RFD +NER LRR ED++++++ + + +ELE+E ++++R + +VLR +
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELERE------FERMRE--DREVLRVI 969
Query: 712 MGSGD 716
+GD
Sbjct: 970 FPTGD 974
Score = 313 (115.2 bits), Expect = 2.2e-162, Sum P(5) = 2.2e-162
Identities = 58/68 (85%), Positives = 66/68 (97%)
Query: 1613 TDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMED 1672
TD+KLTME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+D
Sbjct: 1222 TDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDD 1281
Query: 1673 DMFLRCIE 1680
D+FLRCIE
Sbjct: 1282 DVFLRCIE 1289
Score = 190 (71.9 bits), Expect = 6.6e-291, Sum P(5) = 6.6e-291
Identities = 36/57 (63%), Positives = 47/57 (82%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA 1009
V G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQA 1079
Score = 167 (63.8 bits), Expect = 6.6e-291, Sum P(5) = 6.6e-291
Identities = 31/75 (41%), Positives = 54/75 (72%)
Query: 687 EKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREIFSSGESNV 746
+K D+ + + LRR ED++++++ + + +ELE+E+E++ EDRE LR IF +G+S V
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRVIFPTGDSKV 977
Query: 747 VLPCNLMEVIFILQR 761
VLPCNL+ +I+ Q+
Sbjct: 978 VLPCNLLRMIWNAQK 992
Score = 166 (63.5 bits), Expect = 2.5e-43, Sum P(3) = 2.5e-43
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515 IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557
Score = 97 (39.2 bits), Expect = 6.6e-291, Sum P(5) = 6.6e-291
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 30 EESIILGMDPKFARPDWMXXXXXXXXXXXXXXXXXMHGSARNQEQMMNIL 79
EE +LGM+P++ARP+WM M GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280
Score = 64 (27.6 bits), Expect = 1.3e-136, Sum P(4) = 1.3e-136
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P Y+ G+ +P PG+SP+
Sbjct: 1912 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1950
Score = 59 (25.8 bits), Expect = 4.4e-136, Sum P(4) = 4.4e-136
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ S+P Y SP TP P +SPS
Sbjct: 1793 TSPSYSPTSPSYSPSSPRYTP-QSP--TYTPSSPSYSPS 1828
Score = 55 (24.4 bits), Expect = 1.2e-135, Sum P(4) = 1.2e-135
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 914 TPSS--MSPQMTPWAQSTPAYNALM---SPGAAM-TPGGPGFSPS 952
+PSS +PQ + S+P+Y+ SP + TP P +SPS
Sbjct: 1805 SPSSPRYTPQSPTYTPSSPSYSPSSPSYSPASPKYTPTSPSYSPS 1849
Score = 54 (24.1 bits), Expect = 1.5e-135, Sum P(4) = 1.5e-135
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
+P +PQ ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1604 SPGGYTPQSPSYSPTSPSYSPT-SP--SYSPTSPNYSPT 1639
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P Y+ SP TP P +SP+
Sbjct: 1730 TSPSYSPTSPSYSPTSPNYSPT-SPN--YTPTSPSYSPT 1765
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1716 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPNYSPT 1751
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1709 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1744
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1702 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1737
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1695 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1730
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1688 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1723
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1681 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1716
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1674 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1709
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1667 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1702
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1660 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1695
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1653 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1688
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1646 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1681
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1639 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1674
Score = 49 (22.3 bits), Expect = 5.0e-135, Sum P(4) = 5.0e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1625 TSPSYSPTSPNYSPTSPSYSPT-SP--SYSPTSPSYSPT 1660
Score = 47 (21.6 bits), Expect = 8.0e-135, Sum P(4) = 8.0e-135
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1632 TSPNYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1667
Score = 47 (21.6 bits), Expect = 8.0e-135, Sum P(4) = 8.0e-135
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P Y+ SP + +P P +SP+
Sbjct: 1618 TSPSYSPTSPSYSPTSPNYSPT-SP--SYSPTSPSYSPT 1653
Score = 45 (20.9 bits), Expect = 1.3e-134, Sum P(4) = 1.3e-134
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP + ++P Y+ SP + +P P +SP+
Sbjct: 1765 TSPSYSPTSPNYTPTSPNYSPT-SP--SYSPTSPSYSPT 1800
Score = 45 (20.9 bits), Expect = 1.3e-134, Sum P(4) = 1.3e-134
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P Y SP +P P +SP+
Sbjct: 1758 TSPSYSPTSPSYSPTSPNYTPT-SPN--YSPTSPSYSPT 1793
Score = 44 (20.5 bits), Expect = 1.7e-134, Sum P(4) = 1.7e-134
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 923 TPWAQSTPAYNA--LMSPGAAMTPGGPGFSPS 952
TP + +P ++ + SPG AM+P SP+
Sbjct: 1568 TPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPA 1599
Score = 44 (20.5 bits), Expect = 1.7e-134, Sum P(4) = 1.7e-134
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 914 TPSS--MSPQMTPWAQS-TPAYNALMSPGAAMTPGGPGFSP 951
TP + SP A +P Y+ SP TPG PG SP
Sbjct: 1540 TPGAAGFSPSAASDASGFSPGYSPAWSP----TPGSPG-SP 1575
Score = 43 (20.2 bits), Expect = 1.8e-151, Sum P(5) = 1.8e-151
Identities = 24/94 (25%), Positives = 38/94 (40%)
Query: 1160 INAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDS-KMQDEEDAVDKMEDDMFLRCIEANML 1218
IN DL+ I + ++L ++ I+N DD Q +E+A + M
Sbjct: 996 INPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMA 1055
Query: 1219 SDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGE 1252
+ L G EA + L + +SK I GE
Sbjct: 1056 EEFRLSG-EAFDWL---LGEIESKFNQAIAHPGE 1085
Score = 40 (19.1 bits), Expect = 2.4e-118, Sum P(4) = 2.4e-118
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 1626 INAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDS-KMQDEEDA 1666
IN DL+ I + ++L ++ I+N DD Q +E+A
Sbjct: 996 INPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENA 1037
Score = 37 (18.1 bits), Expect = 1.4e-284, Sum P(5) = 1.4e-284
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 174 ELGHEVCGRFYGNIQ 188
E GH CGR+ I+
Sbjct: 178 EKGHGGCGRYQPRIR 192
Score = 37 (18.1 bits), Expect = 6.4e-30, Sum P(3) = 6.4e-30
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 1469 MKDFKKPPQKGFGLLTLTLMVENIHVTPRQIITPQNN 1505
+K K+ + G + LM + + + R +ITP N
Sbjct: 336 LKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPN 372
>MGI|MGI:98086 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide
A" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 MGI:MGI:98086
GO:GO:0046872 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
EMBL:AL603707 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 CTD:5430
HOVERGEN:HBG004339 OrthoDB:EOG4JWVCM ChiTaRS:POLR2A EMBL:M12130
EMBL:M14101 IPI:IPI00136207 PIR:A28490 RefSeq:NP_033115.1
UniGene:Mm.16533 DisProt:DP00181 ProteinModelPortal:P08775
SMR:P08775 DIP:DIP-46369N IntAct:P08775 STRING:P08775
PhosphoSite:P08775 PaxDb:P08775 PRIDE:P08775
Ensembl:ENSMUST00000058470 Ensembl:ENSMUST00000071213 GeneID:20020
KEGG:mmu:20020 UCSC:uc007jrj.1 InParanoid:Q5F298 NextBio:297535
Bgee:P08775 CleanEx:MM_POLR2A Genevestigator:P08775
GermOnline:ENSMUSG00000005198 Uniprot:P08775
Length = 1970
Score = 1382 (491.5 bits), Expect = 6.6e-291, Sum P(5) = 6.6e-291
Identities = 263/354 (74%), Positives = 301/354 (85%)
Query: 1091 LFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1150
L +VTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225
Query: 1151 LTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFL 1210
LTME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FL
Sbjct: 1226 LTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFL 1285
Query: 1211 RCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMK 1270
RCIE+NML+DMTLQGIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+
Sbjct: 1286 RCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMR 1345
Query: 1271 VLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVM 1330
VLSE+DVDPVRT SNDI EIF VLGIEAVRK++E+E+ V+ F G YVNYRHLALLCD M
Sbjct: 1346 VLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTM 1405
Query: 1331 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 1390
T +GHLMAITRHG+NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL
Sbjct: 1406 TCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAP 1465
Query: 1391 MGTGCFDLLLDAEKCKDGIEIPLATXXXXXXXXXXXXXXXTPSSIPG-PPAWYP 1443
GTGCFDLLLDAEKCK G+EIP PS + G PA P
Sbjct: 1466 AGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTP 1519
Score = 1046 (373.3 bits), Expect = 6.6e-291, Sum P(5) = 6.6e-291
Identities = 215/315 (68%), Positives = 250/315 (79%)
Query: 185 GNIQTVVNNWLLLEG----HSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 240
G+ + VV N L+ G S+G +YLE+ I + I+ + +N L
Sbjct: 624 GDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTV--INNWLL 681
Query: 241 EPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFEN 300
GH+IGIGD+IAD +TY +IQ IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFEN
Sbjct: 682 --IEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFEN 739
Query: 301 QVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP 360
QVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIP
Sbjct: 740 QVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799
Query: 361 FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGY 420
FGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGY
Sbjct: 800 FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859
Query: 421 IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDK 480
IQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+ S+K FE K
Sbjct: 860 IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKK 919
Query: 481 YRFDPSNERPTLRNV 495
+RFD +NER R +
Sbjct: 920 FRFDYTNERALRRTL 934
Score = 659 (237.0 bits), Expect = 1.0e-265, Sum P(5) = 1.0e-265
Identities = 117/175 (66%), Positives = 144/175 (82%)
Query: 74 QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
++MN+LMFL WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618
Query: 134 QWISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNN 193
+ ISPGDTKVVVE+G L+MGI HI +LE+GH++ FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678
Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSI 248
WLL+EGH+IGIGD+IAD +TY +IQ IKKAK+DVIEVI+KAHN +LEPTPG+++
Sbjct: 679 WLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTL 733
Score = 585 (211.0 bits), Expect = 6.1e-163, Sum P(3) = 6.1e-163
Identities = 140/313 (44%), Positives = 187/313 (59%)
Query: 664 LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
L IFN+D VLR +M S + + E+E+VD R ++L ++ G
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300
Query: 718 ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
I ++ K + L + D + I GE +L + + ++ +L + +
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360
Query: 769 NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
++ + ++ + +VRK++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420
Query: 829 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480
Query: 889 KDGIEIPLATXXXXXXXXXXXXXXXTPSSM---SPQMTPWAQ-STPAYNALM-SPGAAMT 943
K G+EIP PS M SP MTPW Q +TPAY A S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540
Query: 944 PGGPGFSPSVAGE 956
PG GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553
Score = 390 (142.3 bits), Expect = 2.1e-131, Sum P(4) = 2.1e-131
Identities = 94/198 (47%), Positives = 122/198 (61%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAM
Sbjct: 782 SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM 841
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV-------IPEDQ---EFV 1118
GGREGLIDTAVKTAET + L + + + YD +N++ ED E V
Sbjct: 842 GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV 901
Query: 1119 NVYYEMPDFDPT-RISPWLLRIELDRKRMTDKKLTMEAISEKI-NAGFGDDLNCIFNDDN 1176
+ + P+ + R + +R + L + + + + NA ++L F
Sbjct: 902 E-FQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR 960
Query: 1177 AEKLVLRIRIMNSDDSKM 1194
++ VLR+ I + DSK+
Sbjct: 961 EDREVLRV-IFPTGDSKV 977
Score = 356 (130.4 bits), Expect = 6.8e-167, Sum P(5) = 6.8e-167
Identities = 66/79 (83%), Positives = 73/79 (92%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225
Query: 1589 LTMEAISEKINAGFGDDLN 1607
LTME I+EKINAGFGDDLN
Sbjct: 1226 LTMEQIAEKINAGFGDDLN 1244
Score = 317 (116.6 bits), Expect = 1.3e-136, Sum P(4) = 1.3e-136
Identities = 57/77 (74%), Positives = 68/77 (88%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436
Query: 576 DVLMDAAAHAEADPMRG 592
DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453
Score = 315 (115.9 bits), Expect = 1.0e-265, Sum P(5) = 1.0e-265
Identities = 64/125 (51%), Positives = 92/125 (73%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+ S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
K+RFD +NER LRR ED++++++ + + +ELE+E ++++R + +VLR +
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELERE------FERMRE--DREVLRVI 969
Query: 712 MGSGD 716
+GD
Sbjct: 970 FPTGD 974
Score = 313 (115.2 bits), Expect = 2.2e-162, Sum P(5) = 2.2e-162
Identities = 58/68 (85%), Positives = 66/68 (97%)
Query: 1613 TDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMED 1672
TD+KLTME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+D
Sbjct: 1222 TDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDD 1281
Query: 1673 DMFLRCIE 1680
D+FLRCIE
Sbjct: 1282 DVFLRCIE 1289
Score = 190 (71.9 bits), Expect = 6.6e-291, Sum P(5) = 6.6e-291
Identities = 36/57 (63%), Positives = 47/57 (82%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA 1009
V G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQA 1079
Score = 167 (63.8 bits), Expect = 6.6e-291, Sum P(5) = 6.6e-291
Identities = 31/75 (41%), Positives = 54/75 (72%)
Query: 687 EKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREIFSSGESNV 746
+K D+ + + LRR ED++++++ + + +ELE+E+E++ EDRE LR IF +G+S V
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRVIFPTGDSKV 977
Query: 747 VLPCNLMEVIFILQR 761
VLPCNL+ +I+ Q+
Sbjct: 978 VLPCNLLRMIWNAQK 992
Score = 166 (63.5 bits), Expect = 2.5e-43, Sum P(3) = 2.5e-43
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515 IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557
Score = 97 (39.2 bits), Expect = 6.6e-291, Sum P(5) = 6.6e-291
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 30 EESIILGMDPKFARPDWMXXXXXXXXXXXXXXXXXMHGSARNQEQMMNIL 79
EE +LGM+P++ARP+WM M GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280
Score = 64 (27.6 bits), Expect = 1.3e-136, Sum P(4) = 1.3e-136
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P Y+ G+ +P PG+SP+
Sbjct: 1912 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1950
Score = 59 (25.8 bits), Expect = 4.4e-136, Sum P(4) = 4.4e-136
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ S+P Y SP TP P +SPS
Sbjct: 1793 TSPSYSPTSPSYSPSSPRYTP-QSP--TYTPSSPSYSPS 1828
Score = 54 (24.1 bits), Expect = 1.5e-135, Sum P(4) = 1.5e-135
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 914 TPSS--MSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
TP S +P ++ S+P+Y+ SP TP P +SPS
Sbjct: 1812 TPQSPTYTPSSPSYSPSSPSYSPT-SP--KYTPTSPSYSPS 1849
Score = 54 (24.1 bits), Expect = 1.5e-135, Sum P(4) = 1.5e-135
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
+P +PQ ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1604 SPGGYTPQSPSYSPTSPSYSPT-SP--SYSPTSPNYSPT 1639
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P Y+ SP TP P +SP+
Sbjct: 1730 TSPSYSPTSPSYSPTSPNYSPT-SPN--YTPTSPSYSPT 1765
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1716 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPNYSPT 1751
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1709 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1744
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1702 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1737
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1695 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1730
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1688 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1723
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1681 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1716
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1674 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1709
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1667 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1702
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1660 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1695
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1653 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1688
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1646 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1681
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1639 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1674
Score = 49 (22.3 bits), Expect = 5.0e-135, Sum P(4) = 5.0e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1625 TSPSYSPTSPNYSPTSPSYSPT-SP--SYSPTSPSYSPT 1660
Score = 47 (21.6 bits), Expect = 8.0e-135, Sum P(4) = 8.0e-135
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1632 TSPNYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1667
Score = 47 (21.6 bits), Expect = 8.0e-135, Sum P(4) = 8.0e-135
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P Y+ SP + +P P +SP+
Sbjct: 1618 TSPSYSPTSPSYSPTSPNYSPT-SP--SYSPTSPSYSPT 1653
Score = 45 (20.9 bits), Expect = 1.3e-134, Sum P(4) = 1.3e-134
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP + ++P Y+ SP + +P P +SP+
Sbjct: 1765 TSPSYSPTSPNYTPTSPNYSPT-SP--SYSPTSPSYSPT 1800
Score = 45 (20.9 bits), Expect = 1.3e-134, Sum P(4) = 1.3e-134
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P Y SP +P P +SP+
Sbjct: 1758 TSPSYSPTSPSYSPTSPNYTPT-SPN--YSPTSPSYSPT 1793
Score = 44 (20.5 bits), Expect = 1.7e-134, Sum P(4) = 1.7e-134
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 923 TPWAQSTPAYNA--LMSPGAAMTPGGPGFSPS 952
TP + +P ++ + SPG AM+P SP+
Sbjct: 1568 TPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPA 1599
Score = 44 (20.5 bits), Expect = 1.7e-134, Sum P(4) = 1.7e-134
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 914 TPSS--MSPQMTPWAQS-TPAYNALMSPGAAMTPGGPGFSP 951
TP + SP A +P Y+ SP TPG PG SP
Sbjct: 1540 TPGAAGFSPSAASDASGFSPGYSPAWSP----TPGSPG-SP 1575
Score = 43 (20.2 bits), Expect = 1.8e-151, Sum P(5) = 1.8e-151
Identities = 24/94 (25%), Positives = 38/94 (40%)
Query: 1160 INAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDS-KMQDEEDAVDKMEDDMFLRCIEANML 1218
IN DL+ I + ++L ++ I+N DD Q +E+A + M
Sbjct: 996 INPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMA 1055
Query: 1219 SDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGE 1252
+ L G EA + L + +SK I GE
Sbjct: 1056 EEFRLSG-EAFDWL---LGEIESKFNQAIAHPGE 1085
Score = 40 (19.1 bits), Expect = 2.4e-118, Sum P(4) = 2.4e-118
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 1626 INAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDS-KMQDEEDA 1666
IN DL+ I + ++L ++ I+N DD Q +E+A
Sbjct: 996 INPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENA 1037
Score = 37 (18.1 bits), Expect = 1.4e-284, Sum P(5) = 1.4e-284
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 174 ELGHEVCGRFYGNIQ 188
E GH CGR+ I+
Sbjct: 178 EKGHGGCGRYQPRIR 192
Score = 37 (18.1 bits), Expect = 6.4e-30, Sum P(3) = 6.4e-30
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 1469 MKDFKKPPQKGFGLLTLTLMVENIHVTPRQIITPQNN 1505
+K K+ + G + LM + + + R +ITP N
Sbjct: 336 LKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPN 372
>UNIPROTKB|F1PGS0 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:AAEX03003616
EMBL:AAEX03003617 Ensembl:ENSCAFT00000026237 Uniprot:F1PGS0
Length = 1969
Score = 1382 (491.5 bits), Expect = 8.0e-291, Sum P(5) = 8.0e-291
Identities = 263/354 (74%), Positives = 301/354 (85%)
Query: 1091 LFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1150
L +VTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225
Query: 1151 LTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFL 1210
LTME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FL
Sbjct: 1226 LTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFL 1285
Query: 1211 RCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMK 1270
RCIE+NML+DMTLQGIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+
Sbjct: 1286 RCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMR 1345
Query: 1271 VLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVM 1330
VLSE+DVDPVRT SNDI EIF VLGIEAVRK++E+E+ V+ F G YVNYRHLALLCD M
Sbjct: 1346 VLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTM 1405
Query: 1331 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 1390
T +GHLMAITRHG+NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL
Sbjct: 1406 TCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAP 1465
Query: 1391 MGTGCFDLLLDAEKCKDGIEIPLATXXXXXXXXXXXXXXXTPSSIPG-PPAWYP 1443
GTGCFDLLLDAEKCK G+EIP PS + G PA P
Sbjct: 1466 AGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTP 1519
Score = 1045 (372.9 bits), Expect = 8.0e-291, Sum P(5) = 8.0e-291
Identities = 214/315 (67%), Positives = 250/315 (79%)
Query: 185 GNIQTVVNNWLLLEG----HSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 240
G+ + VV N L+ G S+G +YLE+ + + I+ + +N L
Sbjct: 624 GDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTV--INNWLL 681
Query: 241 EPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFEN 300
GH+IGIGD+IAD +TY +IQ IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFEN
Sbjct: 682 --IEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFEN 739
Query: 301 QVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP 360
QVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIP
Sbjct: 740 QVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799
Query: 361 FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGY 420
FGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGY
Sbjct: 800 FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859
Query: 421 IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDK 480
IQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+ S+K FE K
Sbjct: 860 IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKK 919
Query: 481 YRFDPSNERPTLRNV 495
+RFD +NER R +
Sbjct: 920 FRFDYTNERALRRTL 934
Score = 660 (237.4 bits), Expect = 7.5e-266, Sum P(5) = 7.5e-266
Identities = 118/175 (67%), Positives = 144/175 (82%)
Query: 74 QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
++MN+LMFL WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618
Query: 134 QWISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNN 193
+ ISPGDTKVVVE+G L+MGI HI +LE+GH+V FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINN 678
Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSI 248
WLL+EGH+IGIGD+IAD +TY +IQ IKKAK+DVIEVI+KAHN +LEPTPG+++
Sbjct: 679 WLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTL 733
Score = 585 (211.0 bits), Expect = 7.9e-163, Sum P(3) = 7.9e-163
Identities = 140/313 (44%), Positives = 187/313 (59%)
Query: 664 LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
L IFN+D VLR +M S + + E+E+VD R ++L ++ G
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300
Query: 718 ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
I ++ K + L + D + I GE +L + + ++ +L + +
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360
Query: 769 NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
++ + ++ + +VRK++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420
Query: 829 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480
Query: 889 KDGIEIPLATXXXXXXXXXXXXXXXTPSSM---SPQMTPWAQ-STPAYNALM-SPGAAMT 943
K G+EIP PS M SP MTPW Q +TPAY A S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540
Query: 944 PGGPGFSPSVAGE 956
PG GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553
Score = 390 (142.3 bits), Expect = 1.6e-131, Sum P(4) = 1.6e-131
Identities = 94/198 (47%), Positives = 122/198 (61%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAM
Sbjct: 782 SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM 841
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV-------IPEDQ---EFV 1118
GGREGLIDTAVKTAET + L + + + YD +N++ ED E V
Sbjct: 842 GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV 901
Query: 1119 NVYYEMPDFDPT-RISPWLLRIELDRKRMTDKKLTMEAISEKI-NAGFGDDLNCIFNDDN 1176
+ + P+ + R + +R + L + + + + NA ++L F
Sbjct: 902 E-FQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR 960
Query: 1177 AEKLVLRIRIMNSDDSKM 1194
++ VLR+ I + DSK+
Sbjct: 961 EDREVLRV-IFPTGDSKV 977
Score = 356 (130.4 bits), Expect = 8.7e-167, Sum P(5) = 8.7e-167
Identities = 66/79 (83%), Positives = 73/79 (92%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225
Query: 1589 LTMEAISEKINAGFGDDLN 1607
LTME I+EKINAGFGDDLN
Sbjct: 1226 LTMEQIAEKINAGFGDDLN 1244
Score = 317 (116.6 bits), Expect = 1.7e-136, Sum P(4) = 1.7e-136
Identities = 57/77 (74%), Positives = 68/77 (88%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436
Query: 576 DVLMDAAAHAEADPMRG 592
DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453
Score = 315 (115.9 bits), Expect = 7.5e-266, Sum P(5) = 7.5e-266
Identities = 64/125 (51%), Positives = 92/125 (73%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+ S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
K+RFD +NER LRR ED++++++ + + +ELE+E ++++R + +VLR +
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELERE------FERMRE--DREVLRVI 969
Query: 712 MGSGD 716
+GD
Sbjct: 970 FPTGD 974
Score = 313 (115.2 bits), Expect = 2.8e-162, Sum P(5) = 2.8e-162
Identities = 58/68 (85%), Positives = 66/68 (97%)
Query: 1613 TDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMED 1672
TD+KLTME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+D
Sbjct: 1222 TDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDD 1281
Query: 1673 DMFLRCIE 1680
D+FLRCIE
Sbjct: 1282 DVFLRCIE 1289
Score = 190 (71.9 bits), Expect = 8.0e-291, Sum P(5) = 8.0e-291
Identities = 36/57 (63%), Positives = 47/57 (82%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA 1009
V G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQA 1079
Score = 167 (63.8 bits), Expect = 8.0e-291, Sum P(5) = 8.0e-291
Identities = 31/75 (41%), Positives = 54/75 (72%)
Query: 687 EKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREIFSSGESNV 746
+K D+ + + LRR ED++++++ + + +ELE+E+E++ EDRE LR IF +G+S V
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRVIFPTGDSKV 977
Query: 747 VLPCNLMEVIFILQR 761
VLPCNL+ +I+ Q+
Sbjct: 978 VLPCNLLRMIWNAQK 992
Score = 166 (63.5 bits), Expect = 2.5e-43, Sum P(3) = 2.5e-43
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515 IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557
Score = 97 (39.2 bits), Expect = 8.0e-291, Sum P(5) = 8.0e-291
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 30 EESIILGMDPKFARPDWMXXXXXXXXXXXXXXXXXMHGSARNQEQMMNIL 79
EE +LGM+P++ARP+WM M GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280
Score = 64 (27.6 bits), Expect = 1.7e-136, Sum P(4) = 1.7e-136
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P Y+ G+ +P PG+SP+
Sbjct: 1911 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1949
Score = 56 (24.8 bits), Expect = 1.2e-135, Sum P(4) = 1.2e-135
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 917 SMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
S SP ++ S+P Y SP TP P +SPS
Sbjct: 1795 SYSPTSPSYSPSSPRYTP-QSP--TYTPSSPSYSPS 1827
Score = 54 (24.1 bits), Expect = 1.9e-135, Sum P(4) = 1.9e-135
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 914 TPSS--MSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
TP S +P ++ S+P+Y+ SP TP P +SPS
Sbjct: 1811 TPQSPTYTPSSPSYSPSSPSYSPT-SP--KYTPTSPSYSPS 1848
Score = 54 (24.1 bits), Expect = 1.9e-135, Sum P(4) = 1.9e-135
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
+P +PQ ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1604 SPGGYTPQSPSYSPTSPSYSPT-SP--SYSPTSPNYSPT 1639
Score = 50 (22.7 bits), Expect = 5.0e-135, Sum P(4) = 5.0e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1709 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1744
Score = 50 (22.7 bits), Expect = 5.0e-135, Sum P(4) = 5.0e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1702 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1737
Score = 50 (22.7 bits), Expect = 5.0e-135, Sum P(4) = 5.0e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1695 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1730
Score = 50 (22.7 bits), Expect = 5.0e-135, Sum P(4) = 5.0e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1688 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1723
Score = 50 (22.7 bits), Expect = 5.0e-135, Sum P(4) = 5.0e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1681 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1716
Score = 50 (22.7 bits), Expect = 5.0e-135, Sum P(4) = 5.0e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1674 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1709
Score = 50 (22.7 bits), Expect = 5.0e-135, Sum P(4) = 5.0e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1667 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1702
Score = 50 (22.7 bits), Expect = 5.0e-135, Sum P(4) = 5.0e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1660 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1695
Score = 50 (22.7 bits), Expect = 5.0e-135, Sum P(4) = 5.0e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1653 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1688
Score = 50 (22.7 bits), Expect = 5.0e-135, Sum P(4) = 5.0e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1646 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1681
Score = 50 (22.7 bits), Expect = 5.0e-135, Sum P(4) = 5.0e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1639 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1674
Score = 49 (22.3 bits), Expect = 6.4e-135, Sum P(4) = 6.4e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1625 TSPSYSPTSPNYSPTSPSYSPT-SP--SYSPTSPSYSPT 1660
Score = 48 (22.0 bits), Expect = 8.2e-135, Sum P(4) = 8.2e-135
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 916 SSMSPQMTPWAQS-TPAY-NALMSPGAAMTPGGPGFSPS 952
S SP TP + + +P N +SP + +P P +SPS
Sbjct: 1770 SPTSPNYTPMSPNYSPTSPNLQLSP--SYSPTSPSYSPS 1806
Score = 48 (22.0 bits), Expect = 8.2e-135, Sum P(4) = 8.2e-135
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALM---SPGAA-MTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP TP P +SP+
Sbjct: 1723 TSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPT 1765
Score = 47 (21.6 bits), Expect = 1.0e-134, Sum P(4) = 1.0e-134
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1632 TSPNYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1667
Score = 47 (21.6 bits), Expect = 1.0e-134, Sum P(4) = 1.0e-134
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P Y+ SP + +P P +SP+
Sbjct: 1618 TSPSYSPTSPSYSPTSPNYSPT-SP--SYSPTSPSYSPT 1653
Score = 44 (20.5 bits), Expect = 2.1e-134, Sum P(4) = 2.1e-134
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 923 TPWAQSTPAYNA--LMSPGAAMTPGGPGFSPS 952
TP + +P ++ + SPG AM+P SP+
Sbjct: 1568 TPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPA 1599
Score = 44 (20.5 bits), Expect = 2.1e-134, Sum P(4) = 2.1e-134
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 914 TPSS--MSPQMTPWAQS-TPAYNALMSPGAAMTPGGPGFSP 951
TP + SP A +P Y+ SP TPG PG SP
Sbjct: 1540 TPGAAGFSPSAASDASGFSPGYSPAWSP----TPGSPG-SP 1575
Score = 44 (20.5 bits), Expect = 2.1e-134, Sum P(4) = 2.1e-134
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
TP+S P +P ++P+Y+ SP TP P +SP+
Sbjct: 1756 TPTS--PSYSP---TSPSYSPT-SPN--YTPMSPNYSPT 1786
Score = 43 (20.2 bits), Expect = 2.3e-151, Sum P(5) = 2.3e-151
Identities = 24/94 (25%), Positives = 38/94 (40%)
Query: 1160 INAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDS-KMQDEEDAVDKMEDDMFLRCIEANML 1218
IN DL+ I + ++L ++ I+N DD Q +E+A + M
Sbjct: 996 INPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMA 1055
Query: 1219 SDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGE 1252
+ L G EA + L + +SK I GE
Sbjct: 1056 EEFRLSG-EAFDWL---LGEIESKFNQAIAHPGE 1085
Score = 40 (19.1 bits), Expect = 3.1e-118, Sum P(4) = 3.1e-118
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 1626 INAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDS-KMQDEEDA 1666
IN DL+ I + ++L ++ I+N DD Q +E+A
Sbjct: 996 INPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENA 1037
Score = 37 (18.1 bits), Expect = 1.7e-284, Sum P(5) = 1.7e-284
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 174 ELGHEVCGRFYGNIQ 188
E GH CGR+ I+
Sbjct: 178 EKGHGGCGRYQPRIR 192
Score = 37 (18.1 bits), Expect = 6.4e-30, Sum P(3) = 6.4e-30
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 1469 MKDFKKPPQKGFGLLTLTLMVENIHVTPRQIITPQNN 1505
+K K+ + G + LM + + + R +ITP N
Sbjct: 336 LKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPN 372
>RGD|1587326 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 RGD:1587326 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 KO:K03006 CTD:5430 OrthoDB:EOG4JWVCM
IPI:IPI00952328 RefSeq:XP_001079162.1 RefSeq:XP_343923.3
UniGene:Rn.163136 Ensembl:ENSRNOT00000068013 GeneID:363633
KEGG:rno:363633 UCSC:RGD:1587326 NextBio:683839 ArrayExpress:D4A5A6
Uniprot:D4A5A6
Length = 1970
Score = 1382 (491.5 bits), Expect = 8.5e-291, Sum P(5) = 8.5e-291
Identities = 263/354 (74%), Positives = 301/354 (85%)
Query: 1091 LFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1150
L +VTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225
Query: 1151 LTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFL 1210
LTME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FL
Sbjct: 1226 LTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFL 1285
Query: 1211 RCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMK 1270
RCIE+NML+DMTLQGIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+
Sbjct: 1286 RCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMR 1345
Query: 1271 VLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVM 1330
VLSE+DVDPVRT SNDI EIF VLGIEAVRK++E+E+ V+ F G YVNYRHLALLCD M
Sbjct: 1346 VLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTM 1405
Query: 1331 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 1390
T +GHLMAITRHG+NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL
Sbjct: 1406 TCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAP 1465
Query: 1391 MGTGCFDLLLDAEKCKDGIEIPLATXXXXXXXXXXXXXXXTPSSIPG-PPAWYP 1443
GTGCFDLLLDAEKCK G+EIP PS + G PA P
Sbjct: 1466 AGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTP 1519
Score = 1045 (372.9 bits), Expect = 8.5e-291, Sum P(5) = 8.5e-291
Identities = 214/315 (67%), Positives = 250/315 (79%)
Query: 185 GNIQTVVNNWLLLEG----HSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 240
G+ + VV N L+ G S+G +YLE+ + + I+ + +N L
Sbjct: 624 GDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTV--INNWLL 681
Query: 241 EPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFEN 300
GH+IGIGD+IAD +TY +IQ IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFEN
Sbjct: 682 --IEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFEN 739
Query: 301 QVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP 360
QVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIP
Sbjct: 740 QVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799
Query: 361 FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGY 420
FGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGY
Sbjct: 800 FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859
Query: 421 IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDK 480
IQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+ S+K FE K
Sbjct: 860 IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKK 919
Query: 481 YRFDPSNERPTLRNV 495
+RFD +NER R +
Sbjct: 920 FRFDYTNERALRRTL 934
Score = 660 (237.4 bits), Expect = 7.9e-266, Sum P(5) = 7.9e-266
Identities = 118/175 (67%), Positives = 144/175 (82%)
Query: 74 QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
++MN+LMFL WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618
Query: 134 QWISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNN 193
+ ISPGDTKVVVE+G L+MGI HI +LE+GH+V FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINN 678
Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSI 248
WLL+EGH+IGIGD+IAD +TY +IQ IKKAK+DVIEVI+KAHN +LEPTPG+++
Sbjct: 679 WLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTL 733
Score = 585 (211.0 bits), Expect = 7.9e-163, Sum P(3) = 7.9e-163
Identities = 140/313 (44%), Positives = 187/313 (59%)
Query: 664 LRRIFNED-----VLR-ELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDV 717
L IFN+D VLR +M S + + E+E+VD R ++L ++ G
Sbjct: 1243 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQG-- 1300
Query: 718 ISELEKEWEKLCE-DREALREIFSSGESNV----VLPCNLMEVIFILQRWKL----WGNE 768
I ++ K + L + D + I GE +L + + ++ +L + +
Sbjct: 1301 IEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSN 1360
Query: 769 NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
++ + ++ + +VRK++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+N
Sbjct: 1361 DIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVN 1420
Query: 829 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 888
RQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKC
Sbjct: 1421 RQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKC 1480
Query: 889 KDGIEIPLATXXXXXXXXXXXXXXXTPSSM---SPQMTPWAQ-STPAYNALM-SPGAAMT 943
K G+EIP PS M SP MTPW Q +TPAY A S G+ MT
Sbjct: 1481 KYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT 1540
Query: 944 PGGPGFSPSVAGE 956
PG GFSPS A +
Sbjct: 1541 PGAAGFSPSAASD 1553
Score = 390 (142.3 bits), Expect = 1.6e-131, Sum P(4) = 1.6e-131
Identities = 94/198 (47%), Positives = 122/198 (61%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAM
Sbjct: 782 SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM 841
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV-------IPEDQ---EFV 1118
GGREGLIDTAVKTAET + L + + + YD +N++ ED E V
Sbjct: 842 GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV 901
Query: 1119 NVYYEMPDFDPT-RISPWLLRIELDRKRMTDKKLTMEAISEKI-NAGFGDDLNCIFNDDN 1176
+ + P+ + R + +R + L + + + + NA ++L F
Sbjct: 902 E-FQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR 960
Query: 1177 AEKLVLRIRIMNSDDSKM 1194
++ VLR+ I + DSK+
Sbjct: 961 EDREVLRV-IFPTGDSKV 977
Score = 356 (130.4 bits), Expect = 8.8e-167, Sum P(5) = 8.8e-167
Identities = 66/79 (83%), Positives = 73/79 (92%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225
Query: 1589 LTMEAISEKINAGFGDDLN 1607
LTME I+EKINAGFGDDLN
Sbjct: 1226 LTMEQIAEKINAGFGDDLN 1244
Score = 317 (116.6 bits), Expect = 1.7e-136, Sum P(4) = 1.7e-136
Identities = 57/77 (74%), Positives = 68/77 (88%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1377 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1436
Query: 576 DVLMDAAAHAEADPMRG 592
DVLM+AAAH E+DPM+G
Sbjct: 1437 DVLMEAAAHGESDPMKG 1453
Score = 315 (115.9 bits), Expect = 7.9e-266, Sum P(5) = 7.9e-266
Identities = 64/125 (51%), Positives = 92/125 (73%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+ S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
K+RFD +NER LRR ED++++++ + + +ELE+E ++++R + +VLR +
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELERE------FERMRE--DREVLRVI 969
Query: 712 MGSGD 716
+GD
Sbjct: 970 FPTGD 974
Score = 313 (115.2 bits), Expect = 2.9e-162, Sum P(5) = 2.9e-162
Identities = 58/68 (85%), Positives = 66/68 (97%)
Query: 1613 TDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMED 1672
TD+KLTME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+D
Sbjct: 1222 TDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDD 1281
Query: 1673 DMFLRCIE 1680
D+FLRCIE
Sbjct: 1282 DVFLRCIE 1289
Score = 190 (71.9 bits), Expect = 8.5e-291, Sum P(5) = 8.5e-291
Identities = 36/57 (63%), Positives = 47/57 (82%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA 1009
V G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQA 1079
Score = 167 (63.8 bits), Expect = 8.5e-291, Sum P(5) = 8.5e-291
Identities = 31/75 (41%), Positives = 54/75 (72%)
Query: 687 EKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREIFSSGESNV 746
+K D+ + + LRR ED++++++ + + +ELE+E+E++ EDRE LR IF +G+S V
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRVIFPTGDSKV 977
Query: 747 VLPCNLMEVIFILQR 761
VLPCNL+ +I+ Q+
Sbjct: 978 VLPCNLLRMIWNAQK 992
Score = 166 (63.5 bits), Expect = 2.5e-43, Sum P(3) = 2.5e-43
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515 IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557
Score = 97 (39.2 bits), Expect = 8.5e-291, Sum P(5) = 8.5e-291
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 30 EESIILGMDPKFARPDWMXXXXXXXXXXXXXXXXXMHGSARNQEQMMNIL 79
EE +LGM+P++ARP+WM M GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280
Score = 64 (27.6 bits), Expect = 1.7e-136, Sum P(4) = 1.7e-136
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P Y+ G+ +P PG+SP+
Sbjct: 1912 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1950
Score = 59 (25.8 bits), Expect = 5.7e-136, Sum P(4) = 5.7e-136
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ S+P Y SP TP P +SPS
Sbjct: 1793 TSPSYSPTSPSYSPSSPRYTP-QSP--TYTPSSPSYSPS 1828
Score = 54 (24.1 bits), Expect = 1.9e-135, Sum P(4) = 1.9e-135
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 914 TPSS--MSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
TP S +P ++ S+P+Y+ SP TP P +SPS
Sbjct: 1812 TPQSPTYTPSSPSYSPSSPSYSPT-SP--KYTPTSPSYSPS 1849
Score = 54 (24.1 bits), Expect = 1.9e-135, Sum P(4) = 1.9e-135
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
+P +PQ ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1604 SPGGYTPQSPSYSPTSPSYSPT-SP--SYSPTSPNYSPT 1639
Score = 50 (22.7 bits), Expect = 5.1e-135, Sum P(4) = 5.1e-135
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P Y+ SP TP P +SP+
Sbjct: 1730 TSPSYSPTSPSYSPTSPNYSPT-SPN--YTPTSPSYSPT 1765
Score = 50 (22.7 bits), Expect = 5.1e-135, Sum P(4) = 5.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1716 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPNYSPT 1751
Score = 50 (22.7 bits), Expect = 5.1e-135, Sum P(4) = 5.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1709 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1744
Score = 50 (22.7 bits), Expect = 5.1e-135, Sum P(4) = 5.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1702 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1737
Score = 50 (22.7 bits), Expect = 5.1e-135, Sum P(4) = 5.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1695 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1730
Score = 50 (22.7 bits), Expect = 5.1e-135, Sum P(4) = 5.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1688 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1723
Score = 50 (22.7 bits), Expect = 5.1e-135, Sum P(4) = 5.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1681 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1716
Score = 50 (22.7 bits), Expect = 5.1e-135, Sum P(4) = 5.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1674 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1709
Score = 50 (22.7 bits), Expect = 5.1e-135, Sum P(4) = 5.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1667 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1702
Score = 50 (22.7 bits), Expect = 5.1e-135, Sum P(4) = 5.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1660 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1695
Score = 50 (22.7 bits), Expect = 5.1e-135, Sum P(4) = 5.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1653 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1688
Score = 50 (22.7 bits), Expect = 5.1e-135, Sum P(4) = 5.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1646 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1681
Score = 50 (22.7 bits), Expect = 5.1e-135, Sum P(4) = 5.1e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1639 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1674
Score = 49 (22.3 bits), Expect = 6.4e-135, Sum P(4) = 6.4e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1625 TSPSYSPTSPNYSPTSPSYSPT-SP--SYSPTSPSYSPT 1660
Score = 47 (21.6 bits), Expect = 1.0e-134, Sum P(4) = 1.0e-134
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1632 TSPNYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1667
Score = 47 (21.6 bits), Expect = 1.0e-134, Sum P(4) = 1.0e-134
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P Y+ SP + +P P +SP+
Sbjct: 1618 TSPSYSPTSPSYSPTSPNYSPT-SP--SYSPTSPSYSPT 1653
Score = 45 (20.9 bits), Expect = 1.7e-134, Sum P(4) = 1.7e-134
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP + ++P Y+ SP + +P P +SP+
Sbjct: 1765 TSPSYSPTSPNYTPTSPNYSPT-SP--SYSPTSPSYSPT 1800
Score = 45 (20.9 bits), Expect = 1.7e-134, Sum P(4) = 1.7e-134
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P Y SP +P P +SP+
Sbjct: 1758 TSPSYSPTSPSYSPTSPNYTPT-SPN--YSPTSPSYSPT 1793
Score = 44 (20.5 bits), Expect = 2.2e-134, Sum P(4) = 2.2e-134
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 923 TPWAQSTPAYNA--LMSPGAAMTPGGPGFSPS 952
TP + +P ++ + SPG AM+P SP+
Sbjct: 1568 TPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPA 1599
Score = 44 (20.5 bits), Expect = 2.2e-134, Sum P(4) = 2.2e-134
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 914 TPSS--MSPQMTPWAQS-TPAYNALMSPGAAMTPGGPGFSP 951
TP + SP A +P Y+ SP TPG PG SP
Sbjct: 1540 TPGAAGFSPSAASDASGFSPGYSPAWSP----TPGSPG-SP 1575
Score = 43 (20.2 bits), Expect = 2.3e-151, Sum P(5) = 2.3e-151
Identities = 24/94 (25%), Positives = 38/94 (40%)
Query: 1160 INAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDS-KMQDEEDAVDKMEDDMFLRCIEANML 1218
IN DL+ I + ++L ++ I+N DD Q +E+A + M
Sbjct: 996 INPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMA 1055
Query: 1219 SDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGE 1252
+ L G EA + L + +SK I GE
Sbjct: 1056 EEFRLSG-EAFDWL---LGEIESKFNQAIAHPGE 1085
Score = 40 (19.1 bits), Expect = 3.2e-118, Sum P(4) = 3.2e-118
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 1626 INAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDS-KMQDEEDA 1666
IN DL+ I + ++L ++ I+N DD Q +E+A
Sbjct: 996 INPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENA 1037
Score = 37 (18.1 bits), Expect = 1.8e-284, Sum P(5) = 1.8e-284
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 174 ELGHEVCGRFYGNIQ 188
E GH CGR+ I+
Sbjct: 178 EKGHGGCGRYQPRIR 192
Score = 37 (18.1 bits), Expect = 6.4e-30, Sum P(3) = 6.4e-30
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 1469 MKDFKKPPQKGFGLLTLTLMVENIHVTPRQIITPQNN 1505
+K K+ + G + LM + + + R +ITP N
Sbjct: 336 LKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPN 372
>UNIPROTKB|G3MZY8 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:DAAA02048777
EMBL:DAAA02048778 EMBL:DAAA02048779 EMBL:DAAA02048780
EMBL:DAAA02048781 Ensembl:ENSBTAT00000064788 Uniprot:G3MZY8
Length = 1970
Score = 1306 (464.8 bits), Expect = 2.5e-281, Sum P(5) = 2.5e-281
Identities = 254/355 (71%), Positives = 291/355 (81%)
Query: 1091 LFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1150
L +VTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225
Query: 1151 LTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFL 1210
LTME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FL
Sbjct: 1226 LTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFL 1285
Query: 1211 RCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD-WLLETDGTSLM 1269
RCIE+NML+DMTLQGIE I KV HLPQTD+KK+I +T FK + LETDG SLM
Sbjct: 1286 RCIESNMLTDMTLQGIEQISKVTCHLPQTDNKKKITMTHDASFKKYFYLFQLETDGVSLM 1345
Query: 1270 KVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDV 1329
+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++E+E+ V+ F G YVNYRHLALLCD
Sbjct: 1346 RVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDT 1405
Query: 1330 MTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLP 1389
MT +GHLMAITRHG+NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL
Sbjct: 1406 MTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLA 1465
Query: 1390 RMGTGCFDLLLDAEKCKDGIEIPLATXXXXXXXXXXXXXXXTPSSIPG-PPAWYP 1443
GTGCFDLLLDAEKCK G+EIP PS + G PA P
Sbjct: 1466 PAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTP 1520
Score = 1046 (373.3 bits), Expect = 2.5e-281, Sum P(5) = 2.5e-281
Identities = 215/315 (68%), Positives = 250/315 (79%)
Query: 185 GNIQTVVNNWLLLEG----HSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 240
G+ + VV N L+ G S+G +YLE+ I + I+ + +N L
Sbjct: 624 GDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTV--INNWLL 681
Query: 241 EPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFEN 300
GH+IGIGD+IAD +TY +IQ IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFEN
Sbjct: 682 --IEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFEN 739
Query: 301 QVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP 360
QVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIP
Sbjct: 740 QVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799
Query: 361 FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGY 420
FGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGY
Sbjct: 800 FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859
Query: 421 IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDK 480
IQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+ S+K FE K
Sbjct: 860 IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKK 919
Query: 481 YRFDPSNERPTLRNV 495
+RFD +NER R +
Sbjct: 920 FRFDYTNERALRRTL 934
Score = 659 (237.0 bits), Expect = 3.8e-256, Sum P(5) = 3.8e-256
Identities = 117/175 (66%), Positives = 144/175 (82%)
Query: 74 QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
++MN+LMFL WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618
Query: 134 QWISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNN 193
+ ISPGDTKVVVE+G L+MGI HI +LE+GH++ FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678
Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSI 248
WLL+EGH+IGIGD+IAD +TY +IQ IKKAK+DVIEVI+KAHN +LEPTPG+++
Sbjct: 679 WLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTL 733
Score = 572 (206.4 bits), Expect = 3.0e-174, Sum P(4) = 3.0e-174
Identities = 114/186 (61%), Positives = 135/186 (72%)
Query: 776 IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
++ + +VRK++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG L
Sbjct: 1369 VLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPL 1428
Query: 836 MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
M+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP
Sbjct: 1429 MKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 1488
Query: 896 LATXXXXXXXXXXXXXXXTPSSM---SPQMTPWAQ-STPAYNALM-SPGAAMTPGGPGFS 950
PS M SP MTPW Q +TPAY A S G+ MTPG GFS
Sbjct: 1489 TNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFS 1548
Query: 951 PSVAGE 956
PS A +
Sbjct: 1549 PSAASD 1554
Score = 390 (142.3 bits), Expect = 2.1e-131, Sum P(4) = 2.1e-131
Identities = 94/198 (47%), Positives = 122/198 (61%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAM
Sbjct: 782 SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM 841
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV-------IPEDQ---EFV 1118
GGREGLIDTAVKTAET + L + + + YD +N++ ED E V
Sbjct: 842 GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV 901
Query: 1119 NVYYEMPDFDPT-RISPWLLRIELDRKRMTDKKLTMEAISEKI-NAGFGDDLNCIFNDDN 1176
+ + P+ + R + +R + L + + + + NA ++L F
Sbjct: 902 E-FQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR 960
Query: 1177 AEKLVLRIRIMNSDDSKM 1194
++ VLR+ I + DSK+
Sbjct: 961 EDREVLRV-IFPTGDSKV 977
Score = 356 (130.4 bits), Expect = 6.8e-167, Sum P(5) = 6.8e-167
Identities = 66/79 (83%), Positives = 73/79 (92%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
L KVTANTAIYYDP+PQ+TV+ EDQE+VNVYYEMPDFD RISPWLLR+ELDRK MTD+K
Sbjct: 1166 LRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRK 1225
Query: 1589 LTMEAISEKINAGFGDDLN 1607
LTME I+EKINAGFGDDLN
Sbjct: 1226 LTMEQIAEKINAGFGDDLN 1244
Score = 317 (116.6 bits), Expect = 1.3e-136, Sum P(4) = 1.3e-136
Identities = 57/77 (74%), Positives = 68/77 (88%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETV
Sbjct: 1378 ALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV 1437
Query: 576 DVLMDAAAHAEADPMRG 592
DVLM+AAAH E+DPM+G
Sbjct: 1438 DVLMEAAAHGESDPMKG 1454
Score = 315 (115.9 bits), Expect = 3.8e-256, Sum P(5) = 3.8e-256
Identities = 64/125 (51%), Positives = 92/125 (73%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+ S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
K+RFD +NER LRR ED++++++ + + +ELE+E ++++R + +VLR +
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELERE------FERMRE--DREVLRVI 969
Query: 712 MGSGD 716
+GD
Sbjct: 970 FPTGD 974
Score = 313 (115.2 bits), Expect = 2.2e-162, Sum P(5) = 2.2e-162
Identities = 58/68 (85%), Positives = 66/68 (97%)
Query: 1613 TDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMED 1672
TD+KLTME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+D
Sbjct: 1222 TDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDD 1281
Query: 1673 DMFLRCIE 1680
D+FLRCIE
Sbjct: 1282 DVFLRCIE 1289
Score = 190 (71.9 bits), Expect = 2.5e-281, Sum P(5) = 2.5e-281
Identities = 36/57 (63%), Positives = 47/57 (82%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA 1009
V G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GEIE++F QA
Sbjct: 1023 VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQA 1079
Score = 167 (63.8 bits), Expect = 2.5e-281, Sum P(5) = 2.5e-281
Identities = 31/75 (41%), Positives = 54/75 (72%)
Query: 687 EKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREIFSSGESNV 746
+K D+ + + LRR ED++++++ + + +ELE+E+E++ EDRE LR IF +G+S V
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRVIFPTGDSKV 977
Query: 747 VLPCNLMEVIFILQR 761
VLPCNL+ +I+ Q+
Sbjct: 978 VLPCNLLRMIWNAQK 992
Score = 166 (63.5 bits), Expect = 2.5e-43, Sum P(3) = 2.5e-43
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515 IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557
Score = 97 (39.2 bits), Expect = 2.5e-281, Sum P(5) = 2.5e-281
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 30 EESIILGMDPKFARPDWMXXXXXXXXXXXXXXXXXMHGSARNQEQMMNIL 79
EE +LGM+P++ARP+WM M GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280
Score = 64 (27.6 bits), Expect = 1.3e-136, Sum P(4) = 1.3e-136
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P Y+ G+ +P PG+SP+
Sbjct: 1912 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1950
Score = 59 (25.8 bits), Expect = 4.4e-136, Sum P(4) = 4.4e-136
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ S+P Y SP TP P +SPS
Sbjct: 1794 TSPSYSPTSPSYSPSSPRYTP-QSP--TYTPSSPSYSPS 1829
Score = 56 (24.8 bits), Expect = 9.1e-136, Sum P(4) = 9.1e-136
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 914 TPSS--MSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
TP S +P ++ S+P+Y+ SP TP P +SPS
Sbjct: 1813 TPQSPTYTPSSPSYSPSSPSYSPT-SP--KYTPASPSYSPS 1850
Score = 54 (24.1 bits), Expect = 1.5e-135, Sum P(4) = 1.5e-135
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 916 SSMSPQMTP----WAQSTPAYNALMSPGAAMTPGGPGFSPS 952
S SP TP ++ ++P+Y+ L SP + +P P +SPS
Sbjct: 1771 SPTSPNYTPTSPNYSPTSPSYS-LTSP--SYSPTSPSYSPS 1808
Score = 54 (24.1 bits), Expect = 1.5e-135, Sum P(4) = 1.5e-135
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
+P +PQ ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1605 SPGGYTPQSPSYSPTSPSYSPT-SP--SYSPTSPNYSPT 1640
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P Y+ SP TP P +SP+
Sbjct: 1731 TSPSYSPTSPSYSPTSPNYSPT-SPN--YTPTSPSYSPT 1766
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1717 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPNYSPT 1752
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1710 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1745
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1703 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1738
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1696 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1731
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1689 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1724
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1682 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1717
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1675 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1710
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1668 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1703
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1661 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1696
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1654 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1689
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1647 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1682
Score = 50 (22.7 bits), Expect = 3.9e-135, Sum P(4) = 3.9e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1640 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1675
Score = 49 (22.3 bits), Expect = 5.0e-135, Sum P(4) = 5.0e-135
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1626 TSPSYSPTSPNYSPTSPSYSPT-SP--SYSPTSPSYSPT 1661
Score = 47 (21.6 bits), Expect = 8.0e-135, Sum P(4) = 8.0e-135
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 916 SSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
S SP+ TP + S + +P +P P +SP+
Sbjct: 1834 SPTSPKYTPASPSYSPSSPEYTPSPKYSPTSPKYSPT 1870
Score = 47 (21.6 bits), Expect = 8.0e-135, Sum P(4) = 8.0e-135
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1633 TSPNYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1668
Score = 47 (21.6 bits), Expect = 8.0e-135, Sum P(4) = 8.0e-135
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P Y+ SP + +P P +SP+
Sbjct: 1619 TSPSYSPTSPSYSPTSPNYSPT-SP--SYSPTSPSYSPT 1654
Score = 44 (20.5 bits), Expect = 1.7e-134, Sum P(4) = 1.7e-134
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 923 TPWAQSTPAYNA--LMSPGAAMTPGGPGFSPS 952
TP + +P ++ + SPG AM+P SP+
Sbjct: 1569 TPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPA 1600
Score = 44 (20.5 bits), Expect = 1.7e-134, Sum P(4) = 1.7e-134
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 916 SSMSPQMTP---WAQSTPAYNALMSPGAAMTPGGPGFSPS 952
S SP+ TP ++ ++P Y+ SP +P P +SP+
Sbjct: 1848 SPSSPEYTPSPKYSPTSPKYSPT-SP--KYSPTSPTYSPT 1884
Score = 44 (20.5 bits), Expect = 1.7e-134, Sum P(4) = 1.7e-134
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 914 TPSS--MSPQMTPWAQS-TPAYNALMSPGAAMTPGGPGFSP 951
TP + SP A +P Y+ SP TPG PG SP
Sbjct: 1541 TPGAAGFSPSAASDASGFSPGYSPAWSP----TPGSPG-SP 1576
Score = 43 (20.2 bits), Expect = 1.8e-151, Sum P(5) = 1.8e-151
Identities = 24/94 (25%), Positives = 38/94 (40%)
Query: 1160 INAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDS-KMQDEEDAVDKMEDDMFLRCIEANML 1218
IN DL+ I + ++L ++ I+N DD Q +E+A + M
Sbjct: 996 INPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMA 1055
Query: 1219 SDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGE 1252
+ L G EA + L + +SK I GE
Sbjct: 1056 EEFRLSG-EAFDWL---LGEIESKFNQAIAHPGE 1085
Score = 40 (19.1 bits), Expect = 2.4e-118, Sum P(4) = 2.4e-118
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 1626 INAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDS-KMQDEEDA 1666
IN DL+ I + ++L ++ I+N DD Q +E+A
Sbjct: 996 INPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENA 1037
Score = 38 (18.4 bits), Expect = 2.2e-120, Sum P(5) = 2.2e-120
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 842 ETVDV-LMDAAAHAEADPMRGVSENII 867
ET V LM + + DP+R S +I+
Sbjct: 1338 ETDGVSLMRVLSEKDVDPVRTTSNDIV 1364
Score = 37 (18.1 bits), Expect = 5.3e-275, Sum P(5) = 5.3e-275
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 174 ELGHEVCGRFYGNIQ 188
E GH CGR+ I+
Sbjct: 178 EKGHGGCGRYQPRIR 192
Score = 37 (18.1 bits), Expect = 6.4e-30, Sum P(3) = 6.4e-30
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 1469 MKDFKKPPQKGFGLLTLTLMVENIHVTPRQIITPQNN 1505
+K K+ + G + LM + + + R +ITP N
Sbjct: 336 LKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPN 372
>WB|WBGene00000123 [details] [associations]
symbol:ama-1 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0010458 "exit from mitosis" evidence=IMP]
[GO:0008356 "asymmetric cell division" evidence=IMP] [GO:0032502
"developmental process" evidence=IMP] [GO:0006479 "protein
methylation" evidence=IMP] [GO:0007369 "gastrulation" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001055 "RNA polymerase II
activity" evidence=IMP] [GO:0042789 "mRNA transcription from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 GO:GO:0005634
GO:GO:0009792 GO:GO:0040010 GO:GO:0007052 GO:GO:0010458
GO:GO:0046872 GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006479 GO:GO:0008356 GO:GO:0007369
GO:GO:0042789 EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665
EMBL:M29235 PIR:A34092 PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356
STRING:P16356 PaxDb:P16356 EnsemblMetazoa:F36A4.7.1
EnsemblMetazoa:F36A4.7.2 GeneID:177190 KEGG:cel:CELE_F36A4.7
UCSC:F36A4.7 CTD:247749 WormBase:F36A4.7
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975 InParanoid:P16356
OMA:KVLPWST NextBio:895720 GO:GO:0001055 Uniprot:P16356
Length = 1856
Score = 1404 (499.3 bits), Expect = 1.7e-270, Sum P(4) = 1.7e-270
Identities = 290/471 (61%), Positives = 350/471 (74%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
V+G D++SKQA NATLL L+RSTLCTK + +L+SEAF+WL+GEIE+RFQQA Q
Sbjct: 1017 VSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQ 1076
Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFI----KD-DYG-PESRGFVENSYLAGLTPSEFF 1064
VG + P H+ K+ G P + + S TPS
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLK-TPSLTV 1135
Query: 1065 F---HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVY 1121
F A E D K T L +VT NTAIYYDPDP+NTVI ED+E+V+++
Sbjct: 1136 FLTGAAAKDPEKAKDVLCKLEHTT-----LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIF 1190
Query: 1122 YEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLV 1181
YEMPD D +R SPWLLRIELDRKRM DKKLTME I+++I+ GFG+D++ I+ DDNAEKLV
Sbjct: 1191 YEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLV 1250
Query: 1182 LRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1241
R+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD
Sbjct: 1251 FRLRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDD 1308
Query: 1242 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1301
KKRIIIT G FK++ADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK
Sbjct: 1309 KKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRK 1368
Query: 1302 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1361
++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETV
Sbjct: 1369 AIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETV 1428
Query: 1362 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 1412
D+LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK G+EIP
Sbjct: 1429 DILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIP 1479
Score = 1003 (358.1 bits), Expect = 1.7e-270, Sum P(4) = 1.7e-270
Identities = 195/263 (74%), Positives = 228/263 (86%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNR 304
GH+IGIGDTIAD TYL+IQ I+KAK+DV++VI+KAHN DLEPTPGNTLRQTFEN+VN+
Sbjct: 678 GHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQ 737
Query: 305 ILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
ILNDARD+TG SA+KSL+E+NN K+MVV+GSKGS INISQVIACVGQQNVEGKRIPFGFR
Sbjct: 738 ILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFR 797
Query: 365 KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 424
RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR
Sbjct: 798 HRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 857
Query: 425 LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
LIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G VE+Q + T+ ++ FE +R D
Sbjct: 858 LIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMD 917
Query: 485 PSNERPTLRNVSS--LRRVVNSK 505
++ + +N S +R + S+
Sbjct: 918 LTDNKFLRKNYSEDVVREIQESE 940
Score = 663 (238.4 bits), Expect = 1.5e-246, Sum P(4) = 1.5e-246
Identities = 117/174 (67%), Positives = 141/174 (81%)
Query: 75 MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
MM++LM+LP WDGK+PQP ILKPKPLWTGKQVFSLIIPGNVN+ RTHSTHPD EDSGPY+
Sbjct: 554 MMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYK 613
Query: 135 WISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNW 194
WISPGDTKV++EHG LL GI H+ LELG+E+ FY +IQTV+N W
Sbjct: 614 WISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAW 673
Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSI 248
L+ EGH+IGIGDTIAD TYL+IQ I+KAK+DV++VI+KAHN DLEPTPG+++
Sbjct: 674 LIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTL 727
Score = 533 (192.7 bits), Expect = 6.4e-164, Sum P(4) = 6.4e-164
Identities = 112/188 (59%), Positives = 134/188 (71%)
Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
+C+I VL +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413
Query: 830 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
Q+ GALMRCSFEETVD+LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK
Sbjct: 1414 QEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCK 1473
Query: 890 DGIEIPLATXXXXXXXXXXXXXXXTPSS--MSPQMTPWAQS-TPAY-NALMSPGAA-MTP 944
G+EIP +PS+ SP +PW TP Y A SP M+P
Sbjct: 1474 YGMEIP---QNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP 1530
Query: 945 GGPGFSPS 952
G GFSP+
Sbjct: 1531 GA-GFSPA 1537
Score = 401 (146.2 bits), Expect = 4.7e-128, Sum P(4) = 4.7e-128
Identities = 78/111 (70%), Positives = 89/111 (80%)
Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
G ++ +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLT
Sbjct: 767 GSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLT 826
Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
PSEFFFHAMGGREGLIDTAVKTAET + L + + + YD +N++
Sbjct: 827 PSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSL 877
Score = 331 (121.6 bits), Expect = 4.5e-132, Sum P(4) = 4.5e-132
Identities = 60/77 (77%), Positives = 70/77 (90%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETV
Sbjct: 1369 AIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETV 1428
Query: 576 DVLMDAAAHAEADPMRG 592
D+LM+AA HAE DP++G
Sbjct: 1429 DILMEAAVHAEEDPVKG 1445
Score = 316 (116.3 bits), Expect = 4.2e-141, Sum P(4) = 4.2e-141
Identities = 57/80 (71%), Positives = 71/80 (88%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKK
Sbjct: 1160 LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKK 1219
Query: 1589 LTMEAISEKINAGFGDDLNT 1608
LTME I+++I+ GFG+D++T
Sbjct: 1220 LTMEMIADRIHGGFGNDVHT 1239
Score = 274 (101.5 bits), Expect = 1.5e-246, Sum P(4) = 1.5e-246
Identities = 62/125 (49%), Positives = 85/125 (68%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G VE+Q + T+ ++ FE
Sbjct: 852 GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 911
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
+R D ++ + LR+ ++EDV+RE+ S D IS +E E W QL + +LR++
Sbjct: 912 RDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESE------WSQLEE--DRRLLRKI 963
Query: 712 MGSGD 716
GD
Sbjct: 964 FPRGD 968
Score = 215 (80.7 bits), Expect = 1.7e-130, Sum P(4) = 1.7e-130
Identities = 41/67 (61%), Positives = 54/67 (80%)
Query: 1614 DKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDD 1673
DKKLTME I+++I+ GFG+D++ I+ DDNAEKLV R+RI D + Q+E+ VDKMEDD
Sbjct: 1217 DKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQ--VDKMEDD 1274
Query: 1674 MFLRCIE 1680
+FLRCIE
Sbjct: 1275 VFLRCIE 1281
Score = 162 (62.1 bits), Expect = 9.4e-37, Sum P(4) = 9.4e-37
Identities = 31/42 (73%), Positives = 36/42 (85%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 1530
+E I + PRQ+ITPQ N+PVMGIVQDTL AVR MTKRDVF+D
Sbjct: 509 IEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550
Score = 161 (61.7 bits), Expect = 1.7e-270, Sum P(4) = 1.7e-270
Identities = 32/65 (49%), Positives = 46/65 (70%)
Query: 697 KQLRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
K LR+ ++EDV+RE+ S D IS +E EW +L EDR LR+IF G++ +VLPCNL +I
Sbjct: 922 KFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLI 981
Query: 757 FILQR 761
+ Q+
Sbjct: 982 WNAQK 986
Score = 88 (36.0 bits), Expect = 1.7e-270, Sum P(4) = 1.7e-270
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 30 EESIILGMDPKFARPDWMXXXXXXXXXXXXXXXXXMHGSARNQEQMMNIL 79
E+ +++GMDP+FARP+WM GSA+NQ+ + + L
Sbjct: 225 EDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKL 274
Score = 66 (28.3 bits), Expect = 4.8e-51, Sum P(3) = 4.8e-51
Identities = 47/228 (20%), Positives = 85/228 (37%)
Query: 72 QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
+E + P D K+ PC L+ + +W +++F + + VN++ H E S
Sbjct: 954 EEDRRLLRKIFPRGDAKIVLPCNLQ-RLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSK 1012
Query: 132 PYQWISPGD--TKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFL-ELGHEVCGRFYGNIQ 188
+S D +K + +LLM I ++C +L E G I+
Sbjct: 1013 KLIIVSGNDEISKQAQYNATLLMNILLRSTLCTK-----NMCTKSKLNSEAFDWLLGEIE 1067
Query: 189 TVVNNWLLLEGHSIGI--GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLE-PTPG 245
+ + G +G ++ +P T QM + + A N+ L P
Sbjct: 1068 SRFQQAIAQPGEMVGALAAQSLGEPAT----QMTLNTFHYAGVS----AKNVTLGVPRLK 1119
Query: 246 HSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNT 293
I + T+ P + + A K E +V+ K + L+ NT
Sbjct: 1120 EIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNT 1167
Score = 60 (26.2 bits), Expect = 4.5e-132, Sum P(4) = 4.5e-132
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 914 TPSSMSPQMT-P-WAQSTPAYNALMSPGAAMTPGGPGFSPS 952
+PSS MT P ++ ++P+Y+ SP A +P P +SP+
Sbjct: 1580 SPSSPQFSMTSPHYSPTSPSYSPT-SPAAGQSPVSPSYSPT 1619
Score = 55 (24.4 bits), Expect = 1.5e-131, Sum P(4) = 1.5e-131
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SPS
Sbjct: 1633 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPSSPSYSPS 1668
Score = 54 (24.1 bits), Expect = 1.9e-131, Sum P(4) = 1.9e-131
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 914 TPSSMSPQMTPWAQS-TPAYNALMSPGAAMTPGGPGFSPS 952
TPSS PQ +P + + TP+ + A +P P +SPS
Sbjct: 1797 TPSS--PQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPS 1834
Score = 53 (23.7 bits), Expect = 2.4e-131, Sum P(4) = 2.4e-131
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SPS
Sbjct: 1626 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPS 1661
Score = 51 (23.0 bits), Expect = 3.9e-131, Sum P(4) = 3.9e-131
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P+Y + G +P P +SPS
Sbjct: 1696 TSPTYSPTSPTYSPTSPSYES----GGGYSPSSPKYSPS 1730
Score = 50 (22.7 bits), Expect = 5.0e-131, Sum P(4) = 5.0e-131
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ S+P+Y+ SP +P P +SP+
Sbjct: 1654 TSPSYSPSSPSYSPSSPSYSP-SSP--RYSPTSPTYSPT 1689
Score = 50 (22.7 bits), Expect = 5.0e-131, Sum P(4) = 5.0e-131
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1619 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1654
Score = 48 (22.0 bits), Expect = 8.2e-131, Sum P(4) = 8.2e-131
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 919 SPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
SPQ +P ++P Y+ SP + TP P +SP+
Sbjct: 1779 SPQYSP---TSPTYSPT-SP--SYTPSSPQYSPT 1806
Score = 47 (21.6 bits), Expect = 1.0e-130, Sum P(4) = 1.0e-130
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 917 SMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1615 SYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1647
Score = 47 (21.6 bits), Expect = 1.0e-130, Sum P(4) = 1.0e-130
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 916 SSMSPQMTP----WAQSTPAYNALMSPGAAM---TPGGPGFSPS 952
S SPQ +P + S+P YN G + +P P +SP+
Sbjct: 1749 SPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPT 1792
Score = 46 (21.3 bits), Expect = 1.3e-130, Sum P(4) = 1.3e-130
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
+PS ++ ++P Y+ SP +P P +SPS
Sbjct: 1813 SPSEQPGTSAQYSPTSPTYSP-SSP--TYSPASPSYSPS 1848
Score = 43 (20.2 bits), Expect = 1.8e-25, Sum P(3) = 1.8e-25
Identities = 21/89 (23%), Positives = 38/89 (42%)
Query: 1445 HIAISLLSRFTTVICIYTLKTFLEMKDFKKPPQKGFGLLTLTLMVENIHVTPRQIITPQN 1504
H+A +L+ + T K +K K+ + G + LM + + + R +IT
Sbjct: 307 HVA-TLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADP 365
Query: 1505 NRPVMGIVQDTLTAVRKMTKRDVFLDKVT 1533
N P+ DT+ R + + F + VT
Sbjct: 366 NLPI-----DTVGVPRTIAQNLTFPEIVT 389
Score = 41 (19.5 bits), Expect = 2.1e-153, Sum P(3) = 2.1e-153
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 688 KEMVDHFSWKQLRRIFNEDVLRELMGSGD 716
+ + + ++ ++ FN D L+EL+ GD
Sbjct: 376 RTIAQNLTFPEIVTPFNVDKLQELVNRGD 404
Score = 40 (19.1 bits), Expect = 6.4e-173, Sum P(3) = 6.4e-173
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 295 RQTFENQVNRILNDARDKTGGSAKKSLTE-YNNLKAMVV 332
R + R+L + KTG ++KK LT Y+ KA V
Sbjct: 111 RLLIDKSAPRVLEILK-KTGTNSKKRLTMIYDLCKAKSV 148
Score = 40 (19.1 bits), Expect = 4.9e-169, Sum P(4) = 4.9e-169
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 668 FNEDVLRELMGSGD 681
FN D L+EL+ GD
Sbjct: 391 FNVDKLQELVNRGD 404
>UNIPROTKB|P16356 [details] [associations]
symbol:ama-1 "DNA-directed RNA polymerase II subunit RPB1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0007052 GO:GO:0010458 GO:GO:0046872
GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0006479 GO:GO:0008356 GO:GO:0007369 GO:GO:0042789
EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665 EMBL:M29235 PIR:A34092
PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356 STRING:P16356
PaxDb:P16356 EnsemblMetazoa:F36A4.7.1 EnsemblMetazoa:F36A4.7.2
GeneID:177190 KEGG:cel:CELE_F36A4.7 UCSC:F36A4.7 CTD:247749
WormBase:F36A4.7 GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975
InParanoid:P16356 OMA:KVLPWST NextBio:895720 GO:GO:0001055
Uniprot:P16356
Length = 1856
Score = 1404 (499.3 bits), Expect = 1.7e-270, Sum P(4) = 1.7e-270
Identities = 290/471 (61%), Positives = 350/471 (74%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA--Q 1010
V+G D++SKQA NATLL L+RSTLCTK + +L+SEAF+WL+GEIE+RFQQA Q
Sbjct: 1017 VSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQ 1076
Query: 1011 VIACVGQQNVEGKRIPFGFRKRTLPHFI----KD-DYG-PESRGFVENSYLAGLTPSEFF 1064
VG + P H+ K+ G P + + S TPS
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLK-TPSLTV 1135
Query: 1065 F---HAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVY 1121
F A E D K T L +VT NTAIYYDPDP+NTVI ED+E+V+++
Sbjct: 1136 FLTGAAAKDPEKAKDVLCKLEHTT-----LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIF 1190
Query: 1122 YEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLV 1181
YEMPD D +R SPWLLRIELDRKRM DKKLTME I+++I+ GFG+D++ I+ DDNAEKLV
Sbjct: 1191 YEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLV 1250
Query: 1182 LRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1241
R+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD
Sbjct: 1251 FRLRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDD 1308
Query: 1242 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1301
KKRIIIT G FK++ADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK
Sbjct: 1309 KKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRK 1368
Query: 1302 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1361
++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETV
Sbjct: 1369 AIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETV 1428
Query: 1362 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 1412
D+LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK G+EIP
Sbjct: 1429 DILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIP 1479
Score = 1003 (358.1 bits), Expect = 1.7e-270, Sum P(4) = 1.7e-270
Identities = 195/263 (74%), Positives = 228/263 (86%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNR 304
GH+IGIGDTIAD TYL+IQ I+KAK+DV++VI+KAHN DLEPTPGNTLRQTFEN+VN+
Sbjct: 678 GHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQ 737
Query: 305 ILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
ILNDARD+TG SA+KSL+E+NN K+MVV+GSKGS INISQVIACVGQQNVEGKRIPFGFR
Sbjct: 738 ILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFR 797
Query: 365 KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 424
RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR
Sbjct: 798 HRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 857
Query: 425 LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
LIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G VE+Q + T+ ++ FE +R D
Sbjct: 858 LIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMD 917
Query: 485 PSNERPTLRNVSS--LRRVVNSK 505
++ + +N S +R + S+
Sbjct: 918 LTDNKFLRKNYSEDVVREIQESE 940
Score = 663 (238.4 bits), Expect = 1.5e-246, Sum P(4) = 1.5e-246
Identities = 117/174 (67%), Positives = 141/174 (81%)
Query: 75 MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
MM++LM+LP WDGK+PQP ILKPKPLWTGKQVFSLIIPGNVN+ RTHSTHPD EDSGPY+
Sbjct: 554 MMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYK 613
Query: 135 WISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNW 194
WISPGDTKV++EHG LL GI H+ LELG+E+ FY +IQTV+N W
Sbjct: 614 WISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAW 673
Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSI 248
L+ EGH+IGIGDTIAD TYL+IQ I+KAK+DV++VI+KAHN DLEPTPG+++
Sbjct: 674 LIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTL 727
Score = 533 (192.7 bits), Expect = 6.4e-164, Sum P(4) = 6.4e-164
Identities = 112/188 (59%), Positives = 134/188 (71%)
Query: 773 LCKIIFVL---SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
+C+I VL +VRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 1354 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413
Query: 830 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
Q+ GALMRCSFEETVD+LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK
Sbjct: 1414 QEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCK 1473
Query: 890 DGIEIPLATXXXXXXXXXXXXXXXTPSS--MSPQMTPWAQS-TPAY-NALMSPGAA-MTP 944
G+EIP +PS+ SP +PW TP Y A SP M+P
Sbjct: 1474 YGMEIP---QNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP 1530
Query: 945 GGPGFSPS 952
G GFSP+
Sbjct: 1531 GA-GFSPA 1537
Score = 401 (146.2 bits), Expect = 4.7e-128, Sum P(4) = 4.7e-128
Identities = 78/111 (70%), Positives = 89/111 (80%)
Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
G ++ +QVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLT
Sbjct: 767 GSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLT 826
Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
PSEFFFHAMGGREGLIDTAVKTAET + L + + + YD +N++
Sbjct: 827 PSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSL 877
Score = 331 (121.6 bits), Expect = 4.5e-132, Sum P(4) = 4.5e-132
Identities = 60/77 (77%), Positives = 70/77 (90%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETV
Sbjct: 1369 AIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETV 1428
Query: 576 DVLMDAAAHAEADPMRG 592
D+LM+AA HAE DP++G
Sbjct: 1429 DILMEAAVHAEEDPVKG 1445
Score = 316 (116.3 bits), Expect = 4.2e-141, Sum P(4) = 4.2e-141
Identities = 57/80 (71%), Positives = 71/80 (88%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKK 1588
L KVT NTAIYYDPDP+NTVI ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKK
Sbjct: 1160 LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKK 1219
Query: 1589 LTMEAISEKINAGFGDDLNT 1608
LTME I+++I+ GFG+D++T
Sbjct: 1220 LTMEMIADRIHGGFGNDVHT 1239
Score = 274 (101.5 bits), Expect = 1.5e-246, Sum P(4) = 1.5e-246
Identities = 62/125 (49%), Positives = 85/125 (68%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G VE+Q + T+ ++ FE
Sbjct: 852 GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 911
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
+R D ++ + LR+ ++EDV+RE+ S D IS +E E W QL + +LR++
Sbjct: 912 RDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESE------WSQLEE--DRRLLRKI 963
Query: 712 MGSGD 716
GD
Sbjct: 964 FPRGD 968
Score = 215 (80.7 bits), Expect = 1.7e-130, Sum P(4) = 1.7e-130
Identities = 41/67 (61%), Positives = 54/67 (80%)
Query: 1614 DKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDD 1673
DKKLTME I+++I+ GFG+D++ I+ DDNAEKLV R+RI D + Q+E+ VDKMEDD
Sbjct: 1217 DKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQ--VDKMEDD 1274
Query: 1674 MFLRCIE 1680
+FLRCIE
Sbjct: 1275 VFLRCIE 1281
Score = 162 (62.1 bits), Expect = 9.4e-37, Sum P(4) = 9.4e-37
Identities = 31/42 (73%), Positives = 36/42 (85%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 1530
+E I + PRQ+ITPQ N+PVMGIVQDTL AVR MTKRDVF+D
Sbjct: 509 IEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550
Score = 161 (61.7 bits), Expect = 1.7e-270, Sum P(4) = 1.7e-270
Identities = 32/65 (49%), Positives = 46/65 (70%)
Query: 697 KQLRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
K LR+ ++EDV+RE+ S D IS +E EW +L EDR LR+IF G++ +VLPCNL +I
Sbjct: 922 KFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLI 981
Query: 757 FILQR 761
+ Q+
Sbjct: 982 WNAQK 986
Score = 88 (36.0 bits), Expect = 1.7e-270, Sum P(4) = 1.7e-270
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 30 EESIILGMDPKFARPDWMXXXXXXXXXXXXXXXXXMHGSARNQEQMMNIL 79
E+ +++GMDP+FARP+WM GSA+NQ+ + + L
Sbjct: 225 EDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKL 274
Score = 66 (28.3 bits), Expect = 4.8e-51, Sum P(3) = 4.8e-51
Identities = 47/228 (20%), Positives = 85/228 (37%)
Query: 72 QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
+E + P D K+ PC L+ + +W +++F + + VN++ H E S
Sbjct: 954 EEDRRLLRKIFPRGDAKIVLPCNLQ-RLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSK 1012
Query: 132 PYQWISPGD--TKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFL-ELGHEVCGRFYGNIQ 188
+S D +K + +LLM I ++C +L E G I+
Sbjct: 1013 KLIIVSGNDEISKQAQYNATLLMNILLRSTLCTK-----NMCTKSKLNSEAFDWLLGEIE 1067
Query: 189 TVVNNWLLLEGHSIGI--GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLE-PTPG 245
+ + G +G ++ +P T QM + + A N+ L P
Sbjct: 1068 SRFQQAIAQPGEMVGALAAQSLGEPAT----QMTLNTFHYAGVS----AKNVTLGVPRLK 1119
Query: 246 HSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNT 293
I + T+ P + + A K E +V+ K + L+ NT
Sbjct: 1120 EIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNT 1167
Score = 60 (26.2 bits), Expect = 4.5e-132, Sum P(4) = 4.5e-132
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 914 TPSSMSPQMT-P-WAQSTPAYNALMSPGAAMTPGGPGFSPS 952
+PSS MT P ++ ++P+Y+ SP A +P P +SP+
Sbjct: 1580 SPSSPQFSMTSPHYSPTSPSYSPT-SPAAGQSPVSPSYSPT 1619
Score = 55 (24.4 bits), Expect = 1.5e-131, Sum P(4) = 1.5e-131
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SPS
Sbjct: 1633 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPSSPSYSPS 1668
Score = 54 (24.1 bits), Expect = 1.9e-131, Sum P(4) = 1.9e-131
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 914 TPSSMSPQMTPWAQS-TPAYNALMSPGAAMTPGGPGFSPS 952
TPSS PQ +P + + TP+ + A +P P +SPS
Sbjct: 1797 TPSS--PQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPS 1834
Score = 53 (23.7 bits), Expect = 2.4e-131, Sum P(4) = 2.4e-131
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SPS
Sbjct: 1626 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPS 1661
Score = 51 (23.0 bits), Expect = 3.9e-131, Sum P(4) = 3.9e-131
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P+Y + G +P P +SPS
Sbjct: 1696 TSPTYSPTSPTYSPTSPSYES----GGGYSPSSPKYSPS 1730
Score = 50 (22.7 bits), Expect = 5.0e-131, Sum P(4) = 5.0e-131
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ S+P+Y+ SP +P P +SP+
Sbjct: 1654 TSPSYSPSSPSYSPSSPSYSP-SSP--RYSPTSPTYSPT 1689
Score = 50 (22.7 bits), Expect = 5.0e-131, Sum P(4) = 5.0e-131
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1619 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1654
Score = 48 (22.0 bits), Expect = 8.2e-131, Sum P(4) = 8.2e-131
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 919 SPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
SPQ +P ++P Y+ SP + TP P +SP+
Sbjct: 1779 SPQYSP---TSPTYSPT-SP--SYTPSSPQYSPT 1806
Score = 47 (21.6 bits), Expect = 1.0e-130, Sum P(4) = 1.0e-130
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 917 SMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1615 SYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1647
Score = 47 (21.6 bits), Expect = 1.0e-130, Sum P(4) = 1.0e-130
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 916 SSMSPQMTP----WAQSTPAYNALMSPGAAM---TPGGPGFSPS 952
S SPQ +P + S+P YN G + +P P +SP+
Sbjct: 1749 SPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPT 1792
Score = 46 (21.3 bits), Expect = 1.3e-130, Sum P(4) = 1.3e-130
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
+PS ++ ++P Y+ SP +P P +SPS
Sbjct: 1813 SPSEQPGTSAQYSPTSPTYSP-SSP--TYSPASPSYSPS 1848
Score = 43 (20.2 bits), Expect = 1.8e-25, Sum P(3) = 1.8e-25
Identities = 21/89 (23%), Positives = 38/89 (42%)
Query: 1445 HIAISLLSRFTTVICIYTLKTFLEMKDFKKPPQKGFGLLTLTLMVENIHVTPRQIITPQN 1504
H+A +L+ + T K +K K+ + G + LM + + + R +IT
Sbjct: 307 HVA-TLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADP 365
Query: 1505 NRPVMGIVQDTLTAVRKMTKRDVFLDKVT 1533
N P+ DT+ R + + F + VT
Sbjct: 366 NLPI-----DTVGVPRTIAQNLTFPEIVT 389
Score = 41 (19.5 bits), Expect = 2.1e-153, Sum P(3) = 2.1e-153
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 688 KEMVDHFSWKQLRRIFNEDVLRELMGSGD 716
+ + + ++ ++ FN D L+EL+ GD
Sbjct: 376 RTIAQNLTFPEIVTPFNVDKLQELVNRGD 404
Score = 40 (19.1 bits), Expect = 6.4e-173, Sum P(3) = 6.4e-173
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 295 RQTFENQVNRILNDARDKTGGSAKKSLTE-YNNLKAMVV 332
R + R+L + KTG ++KK LT Y+ KA V
Sbjct: 111 RLLIDKSAPRVLEILK-KTGTNSKKRLTMIYDLCKAKSV 148
Score = 40 (19.1 bits), Expect = 4.9e-169, Sum P(4) = 4.9e-169
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 668 FNEDVLRELMGSGD 681
FN D L+EL+ GD
Sbjct: 391 FNVDKLQELVNRGD 404
>DICTYBASE|DDB_G0279193 [details] [associations]
symbol:rpb1 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 dictyBase:DDB_G0279193
GO:GO:0006355 GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000030 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
OMA:KVLPWST EMBL:S52651 PIR:A56823 RefSeq:XP_641735.1 STRING:P35084
PRIDE:P35084 EnsemblProtists:DDB0215406 GeneID:8621932
KEGG:ddi:DDB_G0279193 KO:K03006 ProtClustDB:CLSZ2428993
Uniprot:P35084
Length = 1727
Score = 1002 (357.8 bits), Expect = 2.6e-182, Sum P(4) = 2.6e-182
Identities = 226/461 (49%), Positives = 300/461 (65%)
Query: 966 NATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA-----QVIACVGQQNV 1020
NAT+LF LVRST +K V +RL+ +AF W+ GEIE++F QA +++ + Q++
Sbjct: 1032 NATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIESKFLQALAHPGEMVGALAAQSI 1091
Query: 1021 EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL-----TPS-EFFFHAMGGREGL 1074
G+ P H+ + G + + TPS + R+
Sbjct: 1092 -GE--PATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQVKTPSLTIYLKPHMARD-- 1146
Query: 1075 IDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPTRI 1132
+D A K ++ L VT+ T IYYDPDPQNT+I ED EFVN Y+E+PD D +
Sbjct: 1147 MDRA-KIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAEFVNSYFELPDEEIDVHSM 1205
Query: 1133 SPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDS 1192
SPWLLRIELDR +TDKKLTM I++ + FG LNCIF+DDNAEKL+LRIR++ S ++
Sbjct: 1206 SPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSDDNAEKLILRIRMVESQET 1265
Query: 1193 KMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGE 1252
K D +D DD FLR IE+NMLS+M L+GI+ I KV+M +TD K + TE+G
Sbjct: 1266 KGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFM---RTDDKIPKV-TENGG 1315
Query: 1253 FKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQ 1312
F +W+L+TDG SL++V+S DVD RT SNDI EI QVLGIEAVR ++ KE+ V+
Sbjct: 1316 FGVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNALLKELRAVIS 1375
Query: 1313 FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE 1372
F G YVNYRHLA+L DVMT +GHLMAITRHGINR +TG LMRCSFEETV++LMDAA +E
Sbjct: 1376 FDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEILMDAAMFSE 1435
Query: 1373 ADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL 1413
D ++GV+ENII+GQLP +GTG F++ L+ + K+ I L
Sbjct: 1436 TDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIAL 1476
Score = 809 (289.8 bits), Expect = 2.6e-182, Sum P(4) = 2.6e-182
Identities = 158/238 (66%), Positives = 186/238 (78%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNR 304
G ++GIGDTIAD T ++ + I AK V E+I KA N E PG ++ +TFE +VN+
Sbjct: 670 GFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNKQFECQPGKSVIETFEQKVNQ 729
Query: 305 ILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
+LN ARD G SA+ SL+E NNLKAMV AGSKGS INISQ++ACVGQQNVEGKRIPFGF+
Sbjct: 730 VLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQMMACVGQQNVEGKRIPFGFQ 789
Query: 365 KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 424
RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRR
Sbjct: 790 SRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 849
Query: 425 LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYR 482
L+KAME V + YD TVRNS+G +IQ YGEDG+ G VE+Q ID++ + + E YR
Sbjct: 850 LVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFVENQSIDSLRKDNTELERMYR 907
Score = 410 (149.4 bits), Expect = 4.1e-155, Sum P(5) = 4.1e-155
Identities = 85/177 (48%), Positives = 109/177 (61%)
Query: 72 QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
++ +MNILM+LP WDGK+P P ILKPK LWTGKQ+FSLIIP ++N+ R STH D E
Sbjct: 548 KDLVMNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLIIP-DINLIRFTSTHNDKE--- 603
Query: 132 PYQWISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVV 191
P + S GDT+V++E G LL GI H+ E GH+ C F QTVV
Sbjct: 604 PNE-CSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVV 662
Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSI 248
N+WL+ G ++GIGDTIAD T ++ + I AK V E+I KA N E PG S+
Sbjct: 663 NHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNKQFECQPGKSV 719
Score = 397 (144.8 bits), Expect = 7.1e-113, Sum P(4) = 7.1e-113
Identities = 110/299 (36%), Positives = 165/299 (55%)
Query: 664 LRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQ-LRRI----FNEDVLRELMGSGDVI 718
L IF++D +L+ ++ E + D+ Q LRRI +E VLR + G V
Sbjct: 1241 LNCIFSDDNAEKLILRIRMVESQETKGTDNDDDDQFLRRIESNMLSEMVLRGIKGIKKVF 1300
Query: 719 SELEKEWEKLCEDRE-ALREIFSSGESNVVLPCNLMEVIFI--LQRWKLWGNENLRFLCK 775
+ + K+ E+ +RE + V +L+EV+ + + N+ + + +
Sbjct: 1301 MRTDDKIPKVTENGGFGVREEWILDTDGV----SLLEVMSHPDVDHTRTTSNDIVEII-Q 1355
Query: 776 IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
++ + +VR ++ KE+ V+ F G YVNYRHLA+L DVMT +GHLMAITRHGINR +TG L
Sbjct: 1356 VLGIEAVRNALLKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPL 1415
Query: 836 MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
MRCSFEETV++LMDAA +E D ++GV+ENII+GQLP +GTG F++ L+ + K+ I
Sbjct: 1416 MRCSFEETVEILMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIA 1475
Query: 896 LATXXXXXXXXXXXXXXXTPSSMSPQMTPW-AQSTPAYNALMSPGAAMTPGGPG-FSPS 952
L TP S +P + +TP +N +P + G FSPS
Sbjct: 1476 LPEPSNVSYPD-------TPGSQTPSYSYGDGSTTPFHNPYDAPLSPFNETFRGDFSPS 1527
Score = 380 (138.8 bits), Expect = 8.8e-87, Sum P(5) = 8.8e-87
Identities = 72/102 (70%), Positives = 84/102 (82%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q++ACVGQQNVEGKRIPFGF+ RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 768 SQMMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 827
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
GGREGLIDTAVKT+ET + L + + +I YD +N++
Sbjct: 828 GGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSL 869
Score = 275 (101.9 bits), Expect = 1.0e-100, Sum P(4) = 1.0e-100
Identities = 51/81 (62%), Positives = 64/81 (79%)
Query: 519 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
KE+ V+ F G YVNYRHLA+L DVMT +GHLMAITRHGINR +TG LMRCSFEETV++L
Sbjct: 1368 KELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEIL 1427
Query: 579 MDAAAHAEADPMRGYIQRRLI 599
MDAA +E D ++G + ++
Sbjct: 1428 MDAAMFSETDDVKGVTENIIL 1448
Score = 246 (91.7 bits), Expect = 8.6e-101, Sum P(5) = 8.6e-101
Identities = 68/167 (40%), Positives = 92/167 (55%)
Query: 1490 ENIHVTPRQIITPQNN---RPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQN 1546
E I++ +Q+ TP +P M D V+ + L VT+ T IYYDPDPQN
Sbjct: 1122 EIINIA-KQVKTPSLTIYLKPHMARDMDRAKIVKSQLEYTT-LANVTSATEIYYDPDPQN 1179
Query: 1547 TVIPEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGD 1604
T+I ED EFVN Y+E+PD D +SPWLLRIELDR +TDKKLTM I++ + FG
Sbjct: 1180 TIISEDAEFVNSYFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADITQCVVRDFGL 1239
Query: 1605 DLNTPLSPTD-KKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRI 1650
LN S + +KL + + G D NDD+ ++ + RI
Sbjct: 1240 SLNCIFSDDNAEKLILRIRMVESQETKGTD-----NDDD-DQFLRRI 1280
Score = 183 (69.5 bits), Expect = 4.1e-155, Sum P(5) = 4.1e-155
Identities = 36/64 (56%), Positives = 46/64 (71%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRL+KAME V + YD TVRNS+G +IQ YGEDG+ G VE+Q ID++ + + E
Sbjct: 844 GYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFVENQSIDSLRKDNTELE 903
Query: 652 DKYR 655
YR
Sbjct: 904 RMYR 907
Score = 167 (63.8 bits), Expect = 1.5e-92, Sum P(5) = 1.5e-92
Identities = 37/68 (54%), Positives = 47/68 (69%)
Query: 1613 TDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMED 1672
TDKKLTM I++ + FG LNCIF+DDNAEKL+LRIR++ S ++K D +D D
Sbjct: 1220 TDKKLTMADITQCVVRDFGLSLNCIFSDDNAEKLILRIRMVESQETKGTDNDD------D 1273
Query: 1673 DMFLRCIE 1680
D FLR IE
Sbjct: 1274 DQFLRRIE 1281
Score = 140 (54.3 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 30/62 (48%), Positives = 38/62 (61%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
V I + PRQI++PQ+NRPVMGIVQDTL R TKRD F++K + + P V
Sbjct: 506 VIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEKDLVMNILMWLPSWDGKV 565
Query: 1549 IP 1550
P
Sbjct: 566 PP 567
Score = 90 (36.7 bits), Expect = 2.6e-182, Sum P(4) = 2.6e-182
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 721 LEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVIFILQRWKLWGNENLRFLCKI--- 776
LEKE+E++ DR LR EI SGE+N LP NL +I Q KL+ N ++R + +
Sbjct: 938 LEKEFERIKSDRSLLRNEIIPSGEANWPLPVNLRRLINNAQ--KLF-NIDIRRVSDLNPA 994
Query: 777 IFVLSVRKSVEK 788
+ VL + K V +
Sbjct: 995 VVVLEIEKLVAR 1006
Score = 58 (25.5 bits), Expect = 1.0e-100, Sum P(4) = 1.0e-100
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ S+P+Y+ SP + +P P +SPS
Sbjct: 1675 TSPSYSPTSPSYSPSSPSYSP-SSP--SYSPSSPSYSPS 1710
Score = 55 (24.4 bits), Expect = 2.1e-100, Sum P(4) = 2.1e-100
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SPS
Sbjct: 1668 TSPSYSPTSPSYSPTSPSYSP-SSP--SYSPSSPSYSPS 1703
Score = 55 (24.4 bits), Expect = 2.1e-100, Sum P(4) = 2.1e-100
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SPS
Sbjct: 1661 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPSSPSYSPS 1696
Score = 54 (24.1 bits), Expect = 2.6e-182, Sum P(4) = 2.6e-182
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 30 EESIILGMDPKFARPDWM 47
E+S +G++P +AR DWM
Sbjct: 222 EDSRAMGINPDWARADWM 239
Score = 53 (23.7 bits), Expect = 3.4e-100, Sum P(4) = 3.4e-100
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SPS
Sbjct: 1654 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPS 1689
Score = 52 (23.4 bits), Expect = 7.1e-113, Sum P(4) = 7.1e-113
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 923 TPWAQSTPAYNALMSPGAAMT--PGGPGFSPS 952
+P A ++P YNA S G++ P P +SP+
Sbjct: 1525 SPSAMNSPGYNANKSYGSSYQYFPQSPTYSPT 1556
Score = 50 (22.7 bits), Expect = 7.0e-100, Sum P(4) = 7.0e-100
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1647 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1682
Score = 50 (22.7 bits), Expect = 7.0e-100, Sum P(4) = 7.0e-100
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1640 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1675
Score = 50 (22.7 bits), Expect = 7.0e-100, Sum P(4) = 7.0e-100
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1633 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1668
Score = 50 (22.7 bits), Expect = 7.0e-100, Sum P(4) = 7.0e-100
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1626 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1661
Score = 50 (22.7 bits), Expect = 7.0e-100, Sum P(4) = 7.0e-100
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1619 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1654
Score = 50 (22.7 bits), Expect = 7.0e-100, Sum P(4) = 7.0e-100
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1612 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1647
Score = 50 (22.7 bits), Expect = 7.0e-100, Sum P(4) = 7.0e-100
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1605 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1640
Score = 50 (22.7 bits), Expect = 7.0e-100, Sum P(4) = 7.0e-100
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1563 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1598
Score = 50 (22.7 bits), Expect = 7.0e-100, Sum P(4) = 7.0e-100
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1556 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1591
Score = 47 (21.6 bits), Expect = 1.4e-99, Sum P(4) = 1.4e-99
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1591 TSPSYSPTSPFYSPTSPSYSPT-SP--SYSPTSPSYSPT 1626
Score = 47 (21.6 bits), Expect = 1.4e-99, Sum P(4) = 1.4e-99
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P Y+ SP + +P P +SP+
Sbjct: 1584 TSPSYSPTSPSYSPTSPFYSPT-SP--SYSPTSPSYSPT 1619
Score = 47 (21.6 bits), Expect = 1.4e-99, Sum P(4) = 1.4e-99
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP +P P +SP+
Sbjct: 1577 TSPSYSPTSPSYSPTSPSYSPT-SP--FYSPTSPSYSPT 1612
Score = 47 (21.6 bits), Expect = 1.4e-99, Sum P(4) = 1.4e-99
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1570 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPFYSPT 1605
Score = 46 (21.3 bits), Expect = 1.8e-99, Sum P(4) = 1.8e-99
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 920 PQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
PQ ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1548 PQSPTYSPTSPSYSPT-SP--SYSPTSPSYSPT 1577
Score = 43 (20.2 bits), Expect = 8.6e-101, Sum P(5) = 8.6e-101
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 1178 EKLVLRIRIMNSDDSKMQDE 1197
EKLV R++I+ + D+ DE
Sbjct: 1001 EKLVARLKIIATADTTEDDE 1020
Score = 43 (20.2 bits), Expect = 8.4e-80, Sum P(4) = 8.4e-80
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 1644 EKLVLRIRIMNSDDSKMQDE 1663
EKLV R++I+ + D+ DE
Sbjct: 1001 EKLVARLKIIATADTTEDDE 1020
Score = 40 (19.1 bits), Expect = 7.8e-99, Sum P(4) = 7.8e-99
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 646 SHKKFEDKYRFDPSNERQ 663
S F +KY + P+N+++
Sbjct: 1710 SSPTFTNKYNYQPNNKKK 1727
Score = 39 (18.8 bits), Expect = 6.5e-75, Sum P(3) = 6.5e-75
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 473 SHKKFEDKYRFDPSNER 489
S F +KY + P+N++
Sbjct: 1710 SSPTFTNKYNYQPNNKK 1726
>POMBASE|SPBC28F2.12 [details] [associations]
symbol:rpb1 "RNA polymerase II large subunit Rpb1"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IC] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IC] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 PomBase:SPBC28F2.12 GO:GO:0005829
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 PDB:3H0G PDBsum:3H0G
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X56564 PIR:S26849
RefSeq:NP_595673.1 ProteinModelPortal:P36594 IntAct:P36594
MINT:MINT-1214221 STRING:P36594 EnsemblFungi:SPBC28F2.12.1
GeneID:2540292 KEGG:spo:SPBC28F2.12 OrthoDB:EOG4J14H5
EvolutionaryTrace:P36594 NextBio:20801422 Uniprot:P36594
Length = 1752
Score = 944 (337.4 bits), Expect = 1.9e-173, Sum P(4) = 1.9e-173
Identities = 207/460 (45%), Positives = 288/460 (62%)
Query: 955 GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVIAC 1014
G D++++ NATLLFQ L+RS K V YRL+ AFEW++GE+E RFQQA V
Sbjct: 1005 GSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPG 1064
Query: 1015 VGQQNVEGKRIPFGFRKRTLP--HFIKDDYGPESRGFVENSYLAGL-----TPSEFFFHA 1067
+ + I + TL H+ + G + + TPS +
Sbjct: 1065 EMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPS-LTIYL 1123
Query: 1068 MGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDF 1127
M +D A K +T L VT+ T I+YDPDPQ+TVI ED++FV ++ +PD
Sbjct: 1124 MPWIAANMDLA-KNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDE 1182
Query: 1128 DPT----RISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLR 1183
+ + SPWLLR+ELDR +M DKKL+M ++ KI F DL I+++DNA+KL++R
Sbjct: 1183 EVEENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKIAESFERDLFTIWSEDNADKLIIR 1242
Query: 1184 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1243
RI+ DD K +D+++ + E+D+FL+ IE +ML ++L+G+ I +VYM K
Sbjct: 1243 CRIIRDDDRKAEDDDNMI---EEDVFLKTIEGHMLESISLRGVPNITRVYMM-----EHK 1294
Query: 1244 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1303
+ E G F+ +W+LETDG +L + ++ VD RT+SN EI Q+LGIEA R ++
Sbjct: 1295 IVRQIEDGTFERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRSAL 1354
Query: 1304 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1363
KE+ V++F G YVNYRHLALLCDVMT++GHLMAITRHGINR +TGALMRCSFEETV++
Sbjct: 1355 LKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEI 1414
Query: 1364 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1403
LMDAAA E D +G+SENI++GQL MGTG FD+ LD +
Sbjct: 1415 LMDAAASGEKDDCKGISENIMLGQLAPMGTGAFDIYLDQD 1454
Score = 815 (292.0 bits), Expect = 1.9e-173, Sum P(4) = 1.9e-173
Identities = 163/245 (66%), Positives = 188/245 (76%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNR 304
G SIGIGDTIAD T E+ +K+A+ V E IQ A + L+P PG TLR++FE +V+R
Sbjct: 667 GFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAKVSR 726
Query: 305 ILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
ILN ARD G SA+ SL + NN+K MV AGSKGS INISQ+ ACVGQQ VEGKRIPFGF+
Sbjct: 727 ILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFK 786
Query: 365 KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 424
RTLPHF KDD PESRGF+ENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRR
Sbjct: 787 YRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRR 846
Query: 425 LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
L+KAME VMV YD TVRN++G +IQ YGEDGL VE+Q D++ LS K+FE KYR D
Sbjct: 847 LVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFEKKYRID 906
Query: 485 PSNER 489
+R
Sbjct: 907 LMEDR 911
Score = 398 (145.2 bits), Expect = 6.0e-115, Sum P(4) = 6.0e-115
Identities = 90/207 (43%), Positives = 124/207 (59%)
Query: 751 NLMEVIFI--LQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLAL 808
NL E + + + + + N + L +I+ + + R ++ KE+ V++F G YVNYRHLAL
Sbjct: 1318 NLTEAMTVEGVDATRTYSNSFVEIL-QILGIEATRSALLKELRNVIEFDGSYVNYRHLAL 1376
Query: 809 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 868
LCDVMT++GHLMAITRHGINR +TGALMRCSFEETV++LMDAAA E D +G+SENI++
Sbjct: 1377 LCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIML 1436
Query: 869 GQLPRMGTGCFDLLLDAEKCKD---GIEIPLATXXXXXXXXXXXXXXXTPSSMSPQMTPW 925
GQL MGTG FD+ LD + + G +P TP SP +
Sbjct: 1437 GQLAPMGTGAFDIYLDQDMLMNYSLGTAVP-TLAGSGMGTSQLPEGAGTPYERSPMVDSG 1495
Query: 926 AQSTP---AYNALMSPGAAMTPGGPGF 949
+P A++ L+ G+ G GF
Sbjct: 1496 FVGSPDAAAFSPLVQGGSE---GREGF 1519
Score = 354 (129.7 bits), Expect = 4.4e-144, Sum P(5) = 4.4e-144
Identities = 73/174 (41%), Positives = 103/174 (59%)
Query: 75 MMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ 134
+MNI++++P WDG +P P ILKPK LWTGKQ+ SLIIP +N+ R DD+ S
Sbjct: 552 VMNIMLWVPDWDGILPPPVILKPKVLWTGKQILSLIIPKGINLIRD-----DDKQS---- 602
Query: 135 WISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNW 194
+P D+ +++E+G ++ G+ H + E G E+C F+ IQ VVN W
Sbjct: 603 LSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNYW 662
Query: 195 LLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSI 248
LL G SIGIGDTIAD T E+ +K+A+ V E IQ A + L+P PG ++
Sbjct: 663 LLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTL 716
Score = 350 (128.3 bits), Expect = 2.2e-73, Sum P(5) = 2.2e-73
Identities = 79/174 (45%), Positives = 107/174 (61%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+ ACVGQQ VEGKRIPFGF+ RTLPHF KDD PESRGF+ENSYL GLTP EFFFHAM
Sbjct: 765 SQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAM 824
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
GREGLIDTAVKTAET + L + + + YD +N + + + Y D
Sbjct: 825 AGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAM----GDIIQFAYGEDGLD 880
Query: 1129 PTRISPWLL-RIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLV 1181
T + + + L K+ +KK ++ + ++ + + + N I ND + + L+
Sbjct: 881 ATLVEYQVFDSLRLSTKQF-EKKYRIDLMEDRSLSLYME--NSIENDSSVQDLL 931
Score = 298 (110.0 bits), Expect = 9.8e-104, Sum P(4) = 9.8e-104
Identities = 64/109 (58%), Positives = 79/109 (72%)
Query: 488 ERPTLRNVSSLRRVVNS--KPL-LIGCWKLTS-VEKEMNTVLQFYGLYVNYRHLALLCDV 543
E T+ V + R NS + L ++G S + KE+ V++F G YVNYRHLALLCDV
Sbjct: 1321 EAMTVEGVDATRTYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYVNYRHLALLCDV 1380
Query: 544 MTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 592
MT++GHLMAITRHGINR +TGALMRCSFEETV++LMDAAA E D +G
Sbjct: 1381 MTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKG 1429
Score = 226 (84.6 bits), Expect = 4.4e-144, Sum P(5) = 4.4e-144
Identities = 48/100 (48%), Positives = 65/100 (65%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRL+KAME VMV YD TVRN++G +IQ YGEDGL VE+Q D++ LS K+FE
Sbjct: 841 GYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFE 900
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMV 691
KYR D +R L ++ E+ + D++ E ++V
Sbjct: 901 KKYRIDLMEDRSLS-LYMENSIENDSSVQDLLDEEYTQLV 939
Score = 206 (77.6 bits), Expect = 2.6e-94, Sum P(5) = 2.6e-94
Identities = 51/118 (43%), Positives = 68/118 (57%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPT----RISPWLLRIELDRKRM 1584
L VT+ T I+YDPDPQ+TVI ED++FV ++ +PD + + SPWLLR+ELDR +M
Sbjct: 1146 LSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEVEENLYKQSPWLLRLELDRAKM 1205
Query: 1585 TDKKLTMEAISEKINAGFGDDLNTPLSP--TDKKLTMEAISEKINAGFGDDLNCIFND 1640
DKKL+M ++ KI F DL T S DK + I + DD N I D
Sbjct: 1206 LDKKLSMSDVAGKIAESFERDLFTIWSEDNADKLIIRCRIIRDDDRKAEDDDNMIEED 1263
Score = 145 (56.1 bits), Expect = 1.9e-88, Sum P(4) = 1.9e-88
Identities = 29/67 (43%), Positives = 47/67 (70%)
Query: 1614 DKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDD 1673
DKKL+M ++ KI F DL I+++DNA+KL++R RI+ DD K +D+++ + E+D
Sbjct: 1207 DKKLSMSDVAGKIAESFERDLFTIWSEDNADKLIIRCRIIRDDDRKAEDDDNMI---EED 1263
Query: 1674 MFLRCIE 1680
+FL+ IE
Sbjct: 1264 VFLKTIE 1270
Score = 139 (54.0 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPD 1543
++ I + P+QI++PQ+N+PVMGIVQDTL VRK + RD FL + + + PD
Sbjct: 507 IQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIMLWVPD 561
Score = 62 (26.9 bits), Expect = 1.9e-173, Sum P(4) = 1.9e-173
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 721 LEKEWEKLCEDREAL-REIFSSGESNVVLPCNLMEVI 756
L++E+ +L DRE L + IF G++ LP N+ +I
Sbjct: 931 LDEEYTQLVADRELLCKFIFPKGDARWPLPVNVQRII 967
Score = 57 (25.1 bits), Expect = 1.9e-173, Sum P(4) = 1.9e-173
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 30 EESIILGMDPKFARPDWMXXXXXXXXXXXXXXXXXMHGSARNQEQMMNIL 79
E+ LG++ ++ARPDWM + G++R ++ + + L
Sbjct: 223 EDLAHLGLNEQYARPDWMIITVLPVPPPSVRPSISVDGTSRGEDDLTHKL 272
Score = 55 (24.4 bits), Expect = 9.8e-104, Sum P(4) = 9.8e-104
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+A SP + +P P +SP+
Sbjct: 1588 TSPSYSPTSPSYSPTSPSYSAT-SP--SYSPTSPSYSPT 1623
Score = 51 (23.0 bits), Expect = 2.6e-103, Sum P(4) = 2.6e-103
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 929 TPAYNALMSPGAAMTPGGPGFSPSVAG 955
T +++ MSPG +T P +SPS G
Sbjct: 1540 TSPFSSAMSPGYGLT--SPSYSPSSPG 1564
Score = 51 (23.0 bits), Expect = 0.00040, Sum P(4) = 0.00040
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 1556 VNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPTDK 1615
+N+ +PD+D P +L+ ++ T K++ I + IN DD + +PTD
Sbjct: 553 MNIMLWVPDWDGILPPPVILKPKV---LWTGKQILSLIIPKGINLIRDDDKQSLSNPTDS 609
Query: 1616 KLTME 1620
+ +E
Sbjct: 610 GMLIE 614
Score = 50 (22.7 bits), Expect = 3.3e-103, Sum P(4) = 3.3e-103
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1714 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1749
Score = 50 (22.7 bits), Expect = 3.3e-103, Sum P(4) = 3.3e-103
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1707 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1742
Score = 50 (22.7 bits), Expect = 3.3e-103, Sum P(4) = 3.3e-103
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1700 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1735
Score = 50 (22.7 bits), Expect = 3.3e-103, Sum P(4) = 3.3e-103
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1693 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1728
Score = 50 (22.7 bits), Expect = 3.3e-103, Sum P(4) = 3.3e-103
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1686 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1721
Score = 50 (22.7 bits), Expect = 3.3e-103, Sum P(4) = 3.3e-103
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1679 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1714
Score = 50 (22.7 bits), Expect = 3.3e-103, Sum P(4) = 3.3e-103
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1672 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1707
Score = 50 (22.7 bits), Expect = 3.3e-103, Sum P(4) = 3.3e-103
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1665 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1700
Score = 50 (22.7 bits), Expect = 3.3e-103, Sum P(4) = 3.3e-103
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1658 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1693
Score = 50 (22.7 bits), Expect = 3.3e-103, Sum P(4) = 3.3e-103
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1651 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1686
Score = 50 (22.7 bits), Expect = 3.3e-103, Sum P(4) = 3.3e-103
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1644 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1679
Score = 50 (22.7 bits), Expect = 3.3e-103, Sum P(4) = 3.3e-103
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1637 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1672
Score = 50 (22.7 bits), Expect = 3.3e-103, Sum P(4) = 3.3e-103
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1630 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1665
Score = 50 (22.7 bits), Expect = 3.3e-103, Sum P(4) = 3.3e-103
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1623 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1658
Score = 50 (22.7 bits), Expect = 3.3e-103, Sum P(4) = 3.3e-103
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1616 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1651
Score = 50 (22.7 bits), Expect = 3.3e-103, Sum P(4) = 3.3e-103
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1609 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1644
Score = 48 (22.0 bits), Expect = 5.3e-103, Sum P(4) = 5.3e-103
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 916 SSMSPQMTP-WAQSTPAYNALMSPG----AAMTPGGPGFSPS 952
S S M+P + ++P+Y+ SPG A P P +SP+
Sbjct: 1541 SPFSSAMSPGYGLTSPSYSP-SSPGYSTSPAYMPSSPSYSPT 1581
Score = 48 (22.0 bits), Expect = 3.7e-42, Sum P(5) = 3.7e-42
Identities = 14/68 (20%), Positives = 35/68 (51%)
Query: 1161 NAGFGDDLNCIFNDDNAEKLVLRIRIMNSD--DSKMQDEEDAVDKMEDDMFLRCIEANML 1218
NA GD + + +D + ++ ++ +S +K +++ +D MED +E ++
Sbjct: 864 NA-MGDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFEKKYRIDLMEDRSLSLYMENSIE 922
Query: 1219 SDMTLQGI 1226
+D ++Q +
Sbjct: 923 NDSSVQDL 930
Score = 47 (21.6 bits), Expect = 6.7e-103, Sum P(4) = 6.7e-103
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + T P +SP+
Sbjct: 1581 TSPSYSPTSPSYSPTSPSYSPT-SPSYSAT--SPSYSPT 1616
Score = 43 (20.2 bits), Expect = 8.6e-78, Sum P(4) = 8.6e-78
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 1679 IEETDRSFVKVDFVEPKDLVEWKTLLKQ 1706
IEE D+ FV+ F P + VE + L KQ
Sbjct: 1166 IEE-DKDFVEAFFAIPDEEVE-ENLYKQ 1191
Score = 40 (19.1 bits), Expect = 2.6e-94, Sum P(5) = 2.6e-94
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 1642 NAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC-IEET 1682
N L L +M S M +++ E +RC EET
Sbjct: 1370 NYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEET 1411
Score = 39 (18.8 bits), Expect = 4.6e-102, Sum P(4) = 4.6e-102
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 917 SMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFS 950
S SP ++ ++P+Y+ SP + +P P +S
Sbjct: 1577 SYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYS 1607
>CGD|CAL0000919 [details] [associations]
symbol:RPO21 species:5476 "Candida albicans" [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 CGD:CAL0000919
GO:GO:0071216 GO:GO:0036180 GO:GO:0003677 GO:GO:0006366
GO:GO:0009267 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1 STRING:Q5ACI7
GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 814 (291.6 bits), Expect = 9.2e-171, Sum P(5) = 9.2e-171
Identities = 163/262 (62%), Positives = 195/262 (74%)
Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
K ++ IQK N L G SIGIGDTIAD QT ++ I++AK+ V E+I A
Sbjct: 640 KVCAELFSSIQKVVNYWLLHN-GFSIGIGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQ 698
Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
+ LEP PG TLR++FE+ V+R+LN ARD G SA+ SL + NN+K MV +GSKGS INI
Sbjct: 699 HNKLEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINI 758
Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
SQ+ ACVGQQ VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 759 SQMSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 818
Query: 403 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAV 462
GREGLIDTAVKTAETGYIQRRL+KA+E +MVHYD T RNS+G +IQ YGEDG+ G V
Sbjct: 819 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQV 878
Query: 463 EHQRIDTVALSHKKFEDKYRFD 484
E Q +DT+ S + FE +Y+ D
Sbjct: 879 EKQSVDTIPGSDESFERRYKID 900
Score = 809 (289.8 bits), Expect = 9.2e-171, Sum P(5) = 9.2e-171
Identities = 162/315 (51%), Positives = 224/315 (71%)
Query: 1091 LFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPT--RISPWLLRIELDRKRM 1146
L VT++T IYYDPDP+ TVI +D + V Y+ +PD + + + SPWLLR+ELDR +M
Sbjct: 1144 LKNVTSSTEIYYDPDPRTTVIEDDYDTVEAYFAIPDQKVEESIDKQSPWLLRLELDRAKM 1203
Query: 1147 TDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMED 1206
DK+LTM ++EKI+ FG+DL I++DD A+KL++R R++ D + ++ DA E+
Sbjct: 1204 LDKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR-DPKSLDEDADA----EE 1258
Query: 1207 DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGT 1266
D L+ IEA+ML ++L+GI I +V+M + E+GEFK +W+LETDG
Sbjct: 1259 DQILKRIEAHMLESISLRGIPGITRVFMMQHKVSHPD-----ETGEFKQGKEWVLETDGV 1313
Query: 1267 SLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALL 1326
+L V++ VD RT+SND E+ VLGIEA R S+ KE+ V+ F G YVNYRH+ALL
Sbjct: 1314 NLADVMAVPGVDSTRTYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMALL 1373
Query: 1327 CDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMG 1386
DVMT++GHLMAITRHGINR DTGALMRCSFEETV++L+DAAA AE D +G+SEN+++G
Sbjct: 1374 VDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAAAELDDCKGISENVMLG 1433
Query: 1387 QLPRMGTGCFDLLLD 1401
Q+ +GTG FDL++D
Sbjct: 1434 QMAPLGTGSFDLMVD 1448
Score = 379 (138.5 bits), Expect = 1.3e-114, Sum P(5) = 1.3e-114
Identities = 73/136 (53%), Positives = 103/136 (75%)
Query: 751 NLMEVIFI--LQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLAL 808
NL +V+ + + + + N+ + L ++ + + R S+ KE+ V+ F G YVNYRH+AL
Sbjct: 1314 NLADVMAVPGVDSTRTYSNDFIEVL-SVLGIEATRSSLYKEILNVIAFDGSYVNYRHMAL 1372
Query: 809 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 868
L DVMT++GHLMAITRHGINR DTGALMRCSFEETV++L+DAAA AE D +G+SEN+++
Sbjct: 1373 LVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAAAELDDCKGISENVML 1432
Query: 869 GQLPRMGTGCFDLLLD 884
GQ+ +GTG FDL++D
Sbjct: 1433 GQMAPLGTGSFDLMVD 1448
Score = 348 (127.6 bits), Expect = 2.8e-136, Sum P(4) = 2.8e-136
Identities = 67/102 (65%), Positives = 79/102 (77%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+ ACVGQQ VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 759 SQMSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 818
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
GREGLIDTAVKTAET + L + + ++YD +N++
Sbjct: 819 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 860
Score = 332 (121.9 bits), Expect = 2.8e-136, Sum P(4) = 2.8e-136
Identities = 69/176 (39%), Positives = 100/176 (56%)
Query: 73 EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
+Q+MN+ ++P WDG +P P ++KPK LWTGKQ+ SL IP +++ R D G
Sbjct: 544 DQVMNMCYWIPNWDGVIPPPAVVKPKQLWTGKQLLSLAIPKGIHLQRF--------DGGR 595
Query: 133 YQWISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVN 192
+SP DT +++ G ++ G+ H E G +VC + +IQ VVN
Sbjct: 596 -DLLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVN 654
Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSI 248
WLL G SIGIGDTIAD QT ++ I++AK+ V E+I A + LEP PG ++
Sbjct: 655 YWLLHNGFSIGIGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPGMTL 710
Score = 289 (106.8 bits), Expect = 8.4e-102, Sum P(4) = 8.4e-102
Identities = 56/88 (63%), Positives = 70/88 (79%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
+S+ KE+ V+ F G YVNYRH+ALL DVMT++GHLMAITRHGINR DTGALMRCSFEET
Sbjct: 1348 SSLYKEILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEET 1407
Query: 575 VDVLMDAAAHAEADPMRGYIQRRLIKAM 602
V++L+DAAA AE D +G + ++ M
Sbjct: 1408 VEILLDAAAAAELDDCKGISENVMLGQM 1435
Score = 216 (81.1 bits), Expect = 1.2e-134, Sum P(5) = 1.2e-134
Identities = 58/155 (37%), Positives = 91/155 (58%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRL+KA+E +MVHYD T RNS+G +IQ YGEDG+ G VE Q +DT+ S + FE
Sbjct: 835 GYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDTIPGSDESFE 894
Query: 652 DKYRFDPSNERQLRRIFNEDVL---RELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVL 708
+Y+ D + + +E +L +E+ G DV +L+K ++D + QL + + L
Sbjct: 895 RRYKIDVLDTEN---VISESLLESGKEIRG--DV--QLQK-ILDE-EYNQLLK--DRKYL 943
Query: 709 REL-MGSGDVISELEKEWEKLCEDREALREIFSSG 742
RE+ +GD L ++ ++ + +IF +G
Sbjct: 944 REVCFPNGDFSWPLPVNLRRIIQNAQ---QIFHNG 975
Score = 215 (80.7 bits), Expect = 1.5e-108, Sum P(5) = 1.5e-108
Identities = 42/82 (51%), Positives = 59/82 (71%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPT--RISPWLLRIELDRKRM 1584
L VT++T IYYDPDP+ TVI +D + V Y+ +PD + + + SPWLLR+ELDR +M
Sbjct: 1144 LKNVTSSTEIYYDPDPRTTVIEDDYDTVEAYFAIPDQKVEESIDKQSPWLLRLELDRAKM 1203
Query: 1585 TDKKLTMEAISEKINAGFGDDL 1606
DK+LTM ++EKI+ FG+DL
Sbjct: 1204 LDKQLTMAQVAEKISQNFGEDL 1225
Score = 163 (62.4 bits), Expect = 9.2e-171, Sum P(5) = 9.2e-171
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
V G+ L K+A ENATLLFQCL+RS L + V E ++L+ +FEW++GEIE +FQ++ V
Sbjct: 1001 VRGDTPLVKEAQENATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIV 1059
Score = 142 (55.0 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++ Y+ P+ + V
Sbjct: 501 LSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMCYWIPN-WDGV 559
Query: 1549 IP 1550
IP
Sbjct: 560 IP 561
Score = 134 (52.2 bits), Expect = 4.1e-100, Sum P(5) = 4.1e-100
Identities = 28/67 (41%), Positives = 45/67 (67%)
Query: 1614 DKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDD 1673
DK+LTM ++EKI+ FG+DL I++DD A+KL++R R++ D + ++ DA E+D
Sbjct: 1205 DKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR-DPKSLDEDADA----EED 1259
Query: 1674 MFLRCIE 1680
L+ IE
Sbjct: 1260 QILKRIE 1266
Score = 78 (32.5 bits), Expect = 9.2e-171, Sum P(5) = 9.2e-171
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 702 IFNEDVL---RELMGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEVI 756
+ +E +L +E+ G + L++E+ +L +DR+ LRE+ F +G+ + LP NL +I
Sbjct: 907 VISESLLESGKEIRGDVQLQKILDEEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRII 965
Score = 57 (25.1 bits), Expect = 1.3e-114, Sum P(5) = 1.3e-114
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP +A ++PAY+ SP A P P +SP+
Sbjct: 1546 TSPSYSPTSPSYAPTSPAYSPT-SPSYA--PTSPAYSPT 1581
Score = 56 (24.8 bits), Expect = 1.6e-114, Sum P(5) = 1.6e-114
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP +A ++PAY+ SP A +P P +SP+
Sbjct: 1574 TSPAYSPTSPSYAPTSPAYSPT-SP--AYSPTSPSYSPT 1609
Score = 56 (24.8 bits), Expect = 1.6e-114, Sum P(5) = 1.6e-114
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 916 SSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPSVAGEDQ 958
S SPQ +P ++P Y+ SP +PG PG+ P +D+
Sbjct: 1691 SPTSPQYSP---TSPQYSPT-SP--QYSPGSPGYEPEPPKKDE 1727
Score = 54 (24.1 bits), Expect = 2.7e-114, Sum P(5) = 2.7e-114
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP +A ++PAY+ SP A P P +SP+
Sbjct: 1560 TSPAYSPTSPSYAPTSPAYSPT-SPSYA--PTSPAYSPT 1595
Score = 54 (24.1 bits), Expect = 2.7e-114, Sum P(5) = 2.7e-114
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPSVAGEDQLSKQ 962
T S SP ++ ++P+Y+ SP A +P P +SP+ S Q
Sbjct: 1616 TSPSYSPTSPSYSPTSPSYSPT-SP--AYSPTSPSYSPTSPSYSPTSPQ 1661
Score = 50 (22.7 bits), Expect = 7.0e-114, Sum P(5) = 7.0e-114
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1602 TSPSYSPTSPQYSPTSPSYSPT-SP--SYSPTSPSYSPT 1637
Score = 49 (22.3 bits), Expect = 8.9e-114, Sum P(5) = 8.9e-114
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 914 TPSSMSPQMTPWAQST-PAYNALMSPGAAMTPGGPGFSPS 952
+P++ SP + T P Y SPG +P P +SP+
Sbjct: 1517 SPAATSPFSYGYNSITSPGYT---SPGYGYSPTSPSYSPT 1553
Score = 49 (22.3 bits), Expect = 8.9e-114, Sum P(5) = 8.9e-114
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPSVAGEDQLSKQ 962
T S SP ++ ++P+Y+ SP + +P P +SP+ S Q
Sbjct: 1630 TSPSYSPTSPAYSPTSPSYSPT-SP--SYSPTSPQYSPTSPSYSPTSPQ 1675
Score = 48 (22.0 bits), Expect = 1.1e-113, Sum P(5) = 1.1e-113
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP +P P +SP+
Sbjct: 1651 TSPSYSPTSPQYSPTSPSYSPT-SP--QYSPTSPSYSPT 1686
Score = 48 (22.0 bits), Expect = 1.1e-113, Sum P(5) = 1.1e-113
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S +P ++ ++PAY+ SP + +P P +SP+
Sbjct: 1581 TSPSYAPTSPAYSPTSPAYSPT-SP--SYSPTSPQYSPT 1616
Score = 47 (21.6 bits), Expect = 1.4e-113, Sum P(5) = 1.4e-113
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 916 SSMSPQMTPWAQSTPAYNALMSPGA-AMTPGGPGFSPS 952
S SPQ +P + S + SP + + +P P +SP+
Sbjct: 1607 SPTSPQYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1644
Score = 46 (21.3 bits), Expect = 9.2e-171, Sum P(5) = 9.2e-171
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 30 EESIILGMDPKFARPDWM 47
E+ +G + +ARP+WM
Sbjct: 217 EDCYKMGFNEDYARPEWM 234
Score = 45 (20.9 bits), Expect = 2.3e-113, Sum P(5) = 2.3e-113
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P Y+ SP + +P P +SP+
Sbjct: 1595 TSPAYSPTSPSYSPTSPQYSPT-SP--SYSPTSPSYSPT 1630
Score = 45 (20.9 bits), Expect = 2.3e-113, Sum P(5) = 2.3e-113
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P+Y+ SP +P P +SP+
Sbjct: 1588 TSPAYSPTSPAYSPTSPSYSPT-SP--QYSPTSPSYSPT 1623
>UNIPROTKB|Q5ACI7 [details] [associations]
symbol:RPO21 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 CGD:CAL0000919 GO:GO:0071216 GO:GO:0036180
GO:GO:0003677 GO:GO:0006366 GO:GO:0009267 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1
STRING:Q5ACI7 GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 814 (291.6 bits), Expect = 9.2e-171, Sum P(5) = 9.2e-171
Identities = 163/262 (62%), Positives = 195/262 (74%)
Query: 223 KAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAH 282
K ++ IQK N L G SIGIGDTIAD QT ++ I++AK+ V E+I A
Sbjct: 640 KVCAELFSSIQKVVNYWLLHN-GFSIGIGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQ 698
Query: 283 NMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 342
+ LEP PG TLR++FE+ V+R+LN ARD G SA+ SL + NN+K MV +GSKGS INI
Sbjct: 699 HNKLEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINI 758
Query: 343 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 402
SQ+ ACVGQQ VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 759 SQMSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 818
Query: 403 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAV 462
GREGLIDTAVKTAETGYIQRRL+KA+E +MVHYD T RNS+G +IQ YGEDG+ G V
Sbjct: 819 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQV 878
Query: 463 EHQRIDTVALSHKKFEDKYRFD 484
E Q +DT+ S + FE +Y+ D
Sbjct: 879 EKQSVDTIPGSDESFERRYKID 900
Score = 809 (289.8 bits), Expect = 9.2e-171, Sum P(5) = 9.2e-171
Identities = 162/315 (51%), Positives = 224/315 (71%)
Query: 1091 LFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPT--RISPWLLRIELDRKRM 1146
L VT++T IYYDPDP+ TVI +D + V Y+ +PD + + + SPWLLR+ELDR +M
Sbjct: 1144 LKNVTSSTEIYYDPDPRTTVIEDDYDTVEAYFAIPDQKVEESIDKQSPWLLRLELDRAKM 1203
Query: 1147 TDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMED 1206
DK+LTM ++EKI+ FG+DL I++DD A+KL++R R++ D + ++ DA E+
Sbjct: 1204 LDKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR-DPKSLDEDADA----EE 1258
Query: 1207 DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGT 1266
D L+ IEA+ML ++L+GI I +V+M + E+GEFK +W+LETDG
Sbjct: 1259 DQILKRIEAHMLESISLRGIPGITRVFMMQHKVSHPD-----ETGEFKQGKEWVLETDGV 1313
Query: 1267 SLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALL 1326
+L V++ VD RT+SND E+ VLGIEA R S+ KE+ V+ F G YVNYRH+ALL
Sbjct: 1314 NLADVMAVPGVDSTRTYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMALL 1373
Query: 1327 CDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMG 1386
DVMT++GHLMAITRHGINR DTGALMRCSFEETV++L+DAAA AE D +G+SEN+++G
Sbjct: 1374 VDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAAAELDDCKGISENVMLG 1433
Query: 1387 QLPRMGTGCFDLLLD 1401
Q+ +GTG FDL++D
Sbjct: 1434 QMAPLGTGSFDLMVD 1448
Score = 379 (138.5 bits), Expect = 1.3e-114, Sum P(5) = 1.3e-114
Identities = 73/136 (53%), Positives = 103/136 (75%)
Query: 751 NLMEVIFI--LQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLAL 808
NL +V+ + + + + N+ + L ++ + + R S+ KE+ V+ F G YVNYRH+AL
Sbjct: 1314 NLADVMAVPGVDSTRTYSNDFIEVL-SVLGIEATRSSLYKEILNVIAFDGSYVNYRHMAL 1372
Query: 809 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 868
L DVMT++GHLMAITRHGINR DTGALMRCSFEETV++L+DAAA AE D +G+SEN+++
Sbjct: 1373 LVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAAAELDDCKGISENVML 1432
Query: 869 GQLPRMGTGCFDLLLD 884
GQ+ +GTG FDL++D
Sbjct: 1433 GQMAPLGTGSFDLMVD 1448
Score = 348 (127.6 bits), Expect = 2.8e-136, Sum P(4) = 2.8e-136
Identities = 67/102 (65%), Positives = 79/102 (77%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+ ACVGQQ VEGKRIPFGF R+LPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 759 SQMSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 818
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
GREGLIDTAVKTAET + L + + ++YD +N++
Sbjct: 819 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 860
Score = 332 (121.9 bits), Expect = 2.8e-136, Sum P(4) = 2.8e-136
Identities = 69/176 (39%), Positives = 100/176 (56%)
Query: 73 EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
+Q+MN+ ++P WDG +P P ++KPK LWTGKQ+ SL IP +++ R D G
Sbjct: 544 DQVMNMCYWIPNWDGVIPPPAVVKPKQLWTGKQLLSLAIPKGIHLQRF--------DGGR 595
Query: 133 YQWISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVN 192
+SP DT +++ G ++ G+ H E G +VC + +IQ VVN
Sbjct: 596 -DLLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVN 654
Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSI 248
WLL G SIGIGDTIAD QT ++ I++AK+ V E+I A + LEP PG ++
Sbjct: 655 YWLLHNGFSIGIGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPGMTL 710
Score = 289 (106.8 bits), Expect = 8.4e-102, Sum P(4) = 8.4e-102
Identities = 56/88 (63%), Positives = 70/88 (79%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
+S+ KE+ V+ F G YVNYRH+ALL DVMT++GHLMAITRHGINR DTGALMRCSFEET
Sbjct: 1348 SSLYKEILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEET 1407
Query: 575 VDVLMDAAAHAEADPMRGYIQRRLIKAM 602
V++L+DAAA AE D +G + ++ M
Sbjct: 1408 VEILLDAAAAAELDDCKGISENVMLGQM 1435
Score = 216 (81.1 bits), Expect = 1.2e-134, Sum P(5) = 1.2e-134
Identities = 58/155 (37%), Positives = 91/155 (58%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRL+KA+E +MVHYD T RNS+G +IQ YGEDG+ G VE Q +DT+ S + FE
Sbjct: 835 GYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDTIPGSDESFE 894
Query: 652 DKYRFDPSNERQLRRIFNEDVL---RELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVL 708
+Y+ D + + +E +L +E+ G DV +L+K ++D + QL + + L
Sbjct: 895 RRYKIDVLDTEN---VISESLLESGKEIRG--DV--QLQK-ILDE-EYNQLLK--DRKYL 943
Query: 709 REL-MGSGDVISELEKEWEKLCEDREALREIFSSG 742
RE+ +GD L ++ ++ + +IF +G
Sbjct: 944 REVCFPNGDFSWPLPVNLRRIIQNAQ---QIFHNG 975
Score = 215 (80.7 bits), Expect = 1.5e-108, Sum P(5) = 1.5e-108
Identities = 42/82 (51%), Positives = 59/82 (71%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD--FDPT--RISPWLLRIELDRKRM 1584
L VT++T IYYDPDP+ TVI +D + V Y+ +PD + + + SPWLLR+ELDR +M
Sbjct: 1144 LKNVTSSTEIYYDPDPRTTVIEDDYDTVEAYFAIPDQKVEESIDKQSPWLLRLELDRAKM 1203
Query: 1585 TDKKLTMEAISEKINAGFGDDL 1606
DK+LTM ++EKI+ FG+DL
Sbjct: 1204 LDKQLTMAQVAEKISQNFGEDL 1225
Score = 163 (62.4 bits), Expect = 9.2e-171, Sum P(5) = 9.2e-171
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV 1011
V G+ L K+A ENATLLFQCL+RS L + V E ++L+ +FEW++GEIE +FQ++ V
Sbjct: 1001 VRGDTPLVKEAQENATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIV 1059
Score = 142 (55.0 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++ Y+ P+ + V
Sbjct: 501 LSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMCYWIPN-WDGV 559
Query: 1549 IP 1550
IP
Sbjct: 560 IP 561
Score = 134 (52.2 bits), Expect = 4.1e-100, Sum P(5) = 4.1e-100
Identities = 28/67 (41%), Positives = 45/67 (67%)
Query: 1614 DKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDD 1673
DK+LTM ++EKI+ FG+DL I++DD A+KL++R R++ D + ++ DA E+D
Sbjct: 1205 DKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR-DPKSLDEDADA----EED 1259
Query: 1674 MFLRCIE 1680
L+ IE
Sbjct: 1260 QILKRIE 1266
Score = 78 (32.5 bits), Expect = 9.2e-171, Sum P(5) = 9.2e-171
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 702 IFNEDVL---RELMGSGDVISELEKEWEKLCEDREALREI-FSSGESNVVLPCNLMEVI 756
+ +E +L +E+ G + L++E+ +L +DR+ LRE+ F +G+ + LP NL +I
Sbjct: 907 VISESLLESGKEIRGDVQLQKILDEEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRII 965
Score = 57 (25.1 bits), Expect = 1.3e-114, Sum P(5) = 1.3e-114
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP +A ++PAY+ SP A P P +SP+
Sbjct: 1546 TSPSYSPTSPSYAPTSPAYSPT-SPSYA--PTSPAYSPT 1581
Score = 56 (24.8 bits), Expect = 1.6e-114, Sum P(5) = 1.6e-114
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP +A ++PAY+ SP A +P P +SP+
Sbjct: 1574 TSPAYSPTSPSYAPTSPAYSPT-SP--AYSPTSPSYSPT 1609
Score = 56 (24.8 bits), Expect = 1.6e-114, Sum P(5) = 1.6e-114
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 916 SSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPSVAGEDQ 958
S SPQ +P ++P Y+ SP +PG PG+ P +D+
Sbjct: 1691 SPTSPQYSP---TSPQYSPT-SP--QYSPGSPGYEPEPPKKDE 1727
Score = 54 (24.1 bits), Expect = 2.7e-114, Sum P(5) = 2.7e-114
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP +A ++PAY+ SP A P P +SP+
Sbjct: 1560 TSPAYSPTSPSYAPTSPAYSPT-SPSYA--PTSPAYSPT 1595
Score = 54 (24.1 bits), Expect = 2.7e-114, Sum P(5) = 2.7e-114
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPSVAGEDQLSKQ 962
T S SP ++ ++P+Y+ SP A +P P +SP+ S Q
Sbjct: 1616 TSPSYSPTSPSYSPTSPSYSPT-SP--AYSPTSPSYSPTSPSYSPTSPQ 1661
Score = 50 (22.7 bits), Expect = 7.0e-114, Sum P(5) = 7.0e-114
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1602 TSPSYSPTSPQYSPTSPSYSPT-SP--SYSPTSPSYSPT 1637
Score = 49 (22.3 bits), Expect = 8.9e-114, Sum P(5) = 8.9e-114
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 914 TPSSMSPQMTPWAQST-PAYNALMSPGAAMTPGGPGFSPS 952
+P++ SP + T P Y SPG +P P +SP+
Sbjct: 1517 SPAATSPFSYGYNSITSPGYT---SPGYGYSPTSPSYSPT 1553
Score = 49 (22.3 bits), Expect = 8.9e-114, Sum P(5) = 8.9e-114
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPSVAGEDQLSKQ 962
T S SP ++ ++P+Y+ SP + +P P +SP+ S Q
Sbjct: 1630 TSPSYSPTSPAYSPTSPSYSPT-SP--SYSPTSPQYSPTSPSYSPTSPQ 1675
Score = 48 (22.0 bits), Expect = 1.1e-113, Sum P(5) = 1.1e-113
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP +P P +SP+
Sbjct: 1651 TSPSYSPTSPQYSPTSPSYSPT-SP--QYSPTSPSYSPT 1686
Score = 48 (22.0 bits), Expect = 1.1e-113, Sum P(5) = 1.1e-113
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S +P ++ ++PAY+ SP + +P P +SP+
Sbjct: 1581 TSPSYAPTSPAYSPTSPAYSPT-SP--SYSPTSPQYSPT 1616
Score = 47 (21.6 bits), Expect = 1.4e-113, Sum P(5) = 1.4e-113
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 916 SSMSPQMTPWAQSTPAYNALMSPGA-AMTPGGPGFSPS 952
S SPQ +P + S + SP + + +P P +SP+
Sbjct: 1607 SPTSPQYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1644
Score = 46 (21.3 bits), Expect = 9.2e-171, Sum P(5) = 9.2e-171
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 30 EESIILGMDPKFARPDWM 47
E+ +G + +ARP+WM
Sbjct: 217 EDCYKMGFNEDYARPEWM 234
Score = 45 (20.9 bits), Expect = 2.3e-113, Sum P(5) = 2.3e-113
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P Y+ SP + +P P +SP+
Sbjct: 1595 TSPAYSPTSPSYSPTSPQYSPT-SP--SYSPTSPSYSPT 1630
Score = 45 (20.9 bits), Expect = 2.3e-113, Sum P(5) = 2.3e-113
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P+Y+ SP +P P +SP+
Sbjct: 1588 TSPAYSPTSPAYSPTSPSYSPT-SP--QYSPTSPSYSPT 1623
>SGD|S000002299 [details] [associations]
symbol:RPO21 "RNA polymerase II largest subunit B220"
species:4932 "Saccharomyces cerevisiae" [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 SGD:S000002299 GO:GO:0005739
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:X96876 EMBL:U27182
GO:GO:0003899 PDB:4GWQ PDBsum:4GWQ PDB:2LO6 PDBsum:2LO6
eggNOG:COG0086 GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50
PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV
PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA
PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM
PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63
PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5
PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT
PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92
PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI
PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM
PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU
PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ
PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y
PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD
PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16 PDBsum:3S17
PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D
PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E
PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K
PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
EMBL:X03128 EMBL:Z74188 PIR:S67686 RefSeq:NP_010141.1 PDB:2L0I
PDBsum:2L0I ProteinModelPortal:P04050 SMR:P04050 DIP:DIP-611N
IntAct:P04050 MINT:MINT-432838 STRING:P04050 PaxDb:P04050
PeptideAtlas:P04050 EnsemblFungi:YDL140C GeneID:851415
KEGG:sce:YDL140C CYGD:YDL140c GeneTree:ENSGT00700000105212
EvolutionaryTrace:P04050 NextBio:968606 ArrayExpress:P04050
Genevestigator:P04050 GermOnline:YDL140C Uniprot:P04050
Length = 1733
Score = 783 (280.7 bits), Expect = 4.7e-151, Sum P(5) = 4.7e-151
Identities = 186/465 (40%), Positives = 275/465 (59%)
Query: 955 GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVIA- 1013
G++++ + A +A LF CL+RS L T+ V + YRL+ +AF+W++ IE +F ++ V
Sbjct: 1002 GKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPG 1061
Query: 1014 -CVGQQNVEGKRIPFGFRKRTLPHFI-----KDDYGPESRGFVENSYLAGLTPSEFFF-- 1065
VG + P HF K G + N TPS +
Sbjct: 1062 EMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLE 1121
Query: 1066 --HAMGGREG-LIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYY 1122
HA + LI +A++ T L VT + IYYDPDP++TVIPED+E + +++
Sbjct: 1122 PGHAADQEQAKLIRSAIE--HTT-----LKSVTIASEIYYDPDPRSTVIPEDEEIIQLHF 1174
Query: 1123 EMPDFDPTRI----SPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAE 1178
+ D + + SPWLLR+ELDR M DK LTM + E+I F +DL I+++DN E
Sbjct: 1175 SLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDE 1234
Query: 1179 KLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1238
KL++R R++ DA + E+D L+ IE ML ++TL+G+E I +V M +
Sbjct: 1235 KLIIRCRVVRPKSL------DAETEAEEDHMLKKIENTMLENITLRGVENIERVVMM--K 1286
Query: 1239 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1298
D K + + +GE+ +W+LETDG +L +V++ +DP R ++N +I +VLGIEA
Sbjct: 1287 YDRK---VPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEA 1343
Query: 1299 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1358
R ++ KE+ V+ G YVNYRH+ALL DVMT +G L ++TRHG NR +TGALMRCSFE
Sbjct: 1344 GRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFE 1403
Query: 1359 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1403
ETV++L +A A AE D RGVSEN+I+GQ+ +GTG FD+++D E
Sbjct: 1404 ETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEE 1448
Score = 767 (275.1 bits), Expect = 4.7e-151, Sum P(5) = 4.7e-151
Identities = 160/261 (61%), Positives = 189/261 (72%)
Query: 232 IQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPG 291
IQK N L G S GIGDTIAD T EI I +AK+ V++V ++A L G
Sbjct: 649 IQKVVNFWLLHN-GFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHG 707
Query: 292 NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 351
TLR++FE+ V R LN+ARDK G A+ +L + NN+K MV+AGSKGS INI+Q+ ACVGQ
Sbjct: 708 MTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQ 767
Query: 352 QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 411
Q+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 768 QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Query: 412 AVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVA 471
AVKTAETGYIQRRL+KA+E +MVHYD T RNS+G +IQ YGEDG+ +E Q +DT+
Sbjct: 828 AVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIG 887
Query: 472 LSHKKFEDKYRFDPSNERPTL 492
S FE +YR D N TL
Sbjct: 888 GSDAAFEKRYRVDLLNTDHTL 908
Score = 355 (130.0 bits), Expect = 1.1e-68, Sum P(4) = 1.1e-68
Identities = 69/102 (67%), Positives = 80/102 (78%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
AQ+ ACVGQQ+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAM
Sbjct: 759 AQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAM 818
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
GGREGLIDTAVKTAET + L + + ++YD +N++
Sbjct: 819 GGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSL 860
Score = 334 (122.6 bits), Expect = 6.8e-107, Sum P(6) = 6.8e-107
Identities = 66/138 (47%), Positives = 98/138 (71%)
Query: 751 NLMEVIFI--LQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLAL 808
NL EV+ + + +++ N + + +++ + + R ++ KE+ V+ G YVNYRH+AL
Sbjct: 1312 NLSEVMTVPGIDPTRIYTNSFIDIM-EVLGIEAGRAALYKEVYNVIASDGSYVNYRHMAL 1370
Query: 809 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 868
L DVMT +G L ++TRHG NR +TGALMRCSFEETV++L +A A AE D RGVSEN+I+
Sbjct: 1371 LVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVIL 1430
Query: 869 GQLPRMGTGCFDLLLDAE 886
GQ+ +GTG FD+++D E
Sbjct: 1431 GQMAPIGTGAFDVMIDEE 1448
Score = 315 (115.9 bits), Expect = 7.2e-117, Sum P(4) = 7.2e-117
Identities = 68/184 (36%), Positives = 104/184 (56%)
Query: 73 EQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP 132
+Q++N+L ++P WDG +P P I+KPKPLW+GKQ+ S+ IP +++ R DE +
Sbjct: 544 DQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRF------DEGT-- 595
Query: 133 YQWISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVN 192
+SP D +++ G ++ G+ H+ E G +VC + +GNIQ VVN
Sbjct: 596 -TLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVN 654
Query: 193 NWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGD 252
WLL G S GIGDTIAD T EI I +AK+ V++V ++A L T H + + +
Sbjct: 655 FWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLL--TAKHGMTLRE 712
Query: 253 TIAD 256
+ D
Sbjct: 713 SFED 716
Score = 246 (91.7 bits), Expect = 3.0e-92, Sum P(6) = 3.0e-92
Identities = 55/119 (46%), Positives = 74/119 (62%)
Query: 519 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
KE+ V+ G YVNYRH+ALL DVMT +G L ++TRHG NR +TGALMRCSFEETV++L
Sbjct: 1350 KEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEIL 1409
Query: 579 MDAAAHAEADPMRGYIQRRLIKAME-------SVMVHYDCTVRNSVGQLI-QLRYGEDG 629
+A A AE D RG + ++ M VM+ + V+ Q I ++ G+DG
Sbjct: 1410 FEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDG 1468
Score = 209 (78.6 bits), Expect = 7.2e-117, Sum P(4) = 7.2e-117
Identities = 49/125 (39%), Positives = 74/125 (59%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRL+KA+E +MVHYD T RNS+G +IQ YGEDG+ +E Q +DT+ S FE
Sbjct: 835 GYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFE 894
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
+YR D N + +L GS +++ +L+ +++ +KQL + + LRE+
Sbjct: 895 KRYRVDLLNTDHT---LDPSLLES--GS-EILGDLKLQVLLDEEYKQL--VKDRKFLREV 946
Query: 712 MGSGD 716
G+
Sbjct: 947 FVDGE 951
Score = 197 (74.4 bits), Expect = 1.1e-89, Sum P(5) = 1.1e-89
Identities = 43/94 (45%), Positives = 59/94 (62%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRI----SPWLLRIELDRKRM 1584
L VT + IYYDPDP++TVIPED+E + +++ + D + + SPWLLR+ELDR M
Sbjct: 1143 LKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRAAM 1202
Query: 1585 TDKKLTMEAISEKINAGFGDDLNTPLSP-TDKKL 1617
DK LTM + E+I F +DL S D+KL
Sbjct: 1203 NDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKL 1236
Score = 136 (52.9 bits), Expect = 4.6e-09, Sum P(4) = 4.6e-09
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 1496 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIP 1550
P QI++PQ+N+P MGIVQDTL +RK+T RD F++ +Y+ PD + VIP
Sbjct: 508 PLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPD-WDGVIP 561
Score = 118 (46.6 bits), Expect = 1.9e-81, Sum P(5) = 1.9e-81
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 1614 DKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN--SDDSKMQDEED-AVDKM 1670
DK LTM + E+I F +DL I+++DN EKL++R R++ S D++ + EED + K+
Sbjct: 1204 DKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHMLKKI 1263
Query: 1671 EDDMF----LRCIEETDRS-FVKVDFVEPKDLVEW 1700
E+ M LR +E +R +K D P E+
Sbjct: 1264 ENTMLENITLRGVENIERVVMMKYDRKVPSPTGEY 1298
Score = 91 (37.1 bits), Expect = 4.7e-151, Sum P(5) = 4.7e-151
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 710 ELMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
E++G + L++E+++L +DR+ LRE+F GE+N LP N+ +I
Sbjct: 918 EILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRII 964
Score = 72 (30.4 bits), Expect = 6.8e-107, Sum P(6) = 6.8e-107
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPSVAGEDQLSKQANENA 967
T S SP ++ ++P+Y+ SPG +PG P +SP +D+ NEN+
Sbjct: 1685 TSPSYSPTSPNYSPTSPSYSPT-SPG--YSPGSPAYSPK---QDEQKHNENENS 1732
Score = 53 (23.7 bits), Expect = 6.4e-105, Sum P(6) = 6.4e-105
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++PAY+ SP + +P P +SP+
Sbjct: 1643 TSPSYSPTSPSYSPTSPAYSPT-SP--SYSPTSPSYSPT 1678
Score = 53 (23.7 bits), Expect = 6.4e-105, Sum P(6) = 6.4e-105
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP A +P P +SP+
Sbjct: 1636 TSPSYSPTSPSYSPTSPSYSPT-SP--AYSPTSPSYSPT 1671
Score = 50 (22.7 bits), Expect = 1.3e-104, Sum P(6) = 1.3e-104
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1664 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPNYSPT 1699
Score = 50 (22.7 bits), Expect = 1.3e-104, Sum P(6) = 1.3e-104
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1650 TSPSYSPTSPAYSPTSPSYSPT-SP--SYSPTSPSYSPT 1685
Score = 50 (22.7 bits), Expect = 1.3e-104, Sum P(6) = 1.3e-104
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1629 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPAYSPT 1664
Score = 50 (22.7 bits), Expect = 1.3e-104, Sum P(6) = 1.3e-104
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1622 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1657
Score = 50 (22.7 bits), Expect = 1.3e-104, Sum P(6) = 1.3e-104
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1615 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1650
Score = 50 (22.7 bits), Expect = 1.3e-104, Sum P(6) = 1.3e-104
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1608 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1643
Score = 50 (22.7 bits), Expect = 1.3e-104, Sum P(6) = 1.3e-104
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1601 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1636
Score = 50 (22.7 bits), Expect = 1.3e-104, Sum P(6) = 1.3e-104
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1594 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1629
Score = 50 (22.7 bits), Expect = 1.3e-104, Sum P(6) = 1.3e-104
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1587 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1622
Score = 50 (22.7 bits), Expect = 1.3e-104, Sum P(6) = 1.3e-104
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1580 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1615
Score = 50 (22.7 bits), Expect = 1.3e-104, Sum P(6) = 1.3e-104
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1573 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1608
Score = 50 (22.7 bits), Expect = 1.3e-104, Sum P(6) = 1.3e-104
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1566 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1601
Score = 50 (22.7 bits), Expect = 1.3e-104, Sum P(6) = 1.3e-104
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1559 TSPSYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1594
Score = 47 (21.6 bits), Expect = 2.7e-104, Sum P(6) = 2.7e-104
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 919 SPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
SP ++ ++PAY+ SP + +P P +SP+
Sbjct: 1543 SPTSPTYSPTSPAYSPT-SP--SYSPTSPSYSPT 1573
Score = 47 (21.6 bits), Expect = 2.7e-104, Sum P(6) = 2.7e-104
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1552 TSPAYSPTSPSYSPTSPSYSPT-SP--SYSPTSPSYSPT 1587
Score = 47 (21.6 bits), Expect = 2.7e-104, Sum P(6) = 2.7e-104
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P+Y+ SP + +P P +SP+
Sbjct: 1545 TSPTYSPTSPAYSPTSPSYSPT-SP--SYSPTSPSYSPT 1580
Score = 45 (20.9 bits), Expect = 4.7e-151, Sum P(5) = 4.7e-151
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 35 LGMDPKFARPDWM 47
LG + F+RP+WM
Sbjct: 222 LGFNEVFSRPEWM 234
Score = 42 (19.8 bits), Expect = 9.0e-08, Sum P(4) = 9.0e-08
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 1107 QNTVIPEDQEFVNVYYEMPDFDPTRISPWLLR 1138
++T I DQ +N+ Y +PD+D +P +++
Sbjct: 537 RDTFIELDQ-VLNMLYWVPDWDGVIPTPAIIK 567
Score = 39 (18.8 bits), Expect = 4.7e-151, Sum P(5) = 4.7e-151
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 188 QTVVNNWLLLEGHSIGIGDTIADPQTYLEI 217
+TV++ LE +G+ +IA TY E+
Sbjct: 350 RTVISGDPNLELDQVGVPKSIAKTLTYPEV 379
Score = 39 (18.8 bits), Expect = 3.0e-73, Sum P(5) = 3.0e-73
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 1531 KVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRI 1570
KV + T Y +P+ V+ D ++ +P DPTRI
Sbjct: 1290 KVPSPTGEYVK-EPE-WVLETDGVNLSEVMTVPGIDPTRI 1327
Score = 38 (18.4 bits), Expect = 2.2e-101, Sum P(6) = 2.2e-101
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 488 ERPTLRNVSSLRRVVNSK 505
E TLR V ++ RVV K
Sbjct: 1269 ENITLRGVENIERVVMMK 1286
Score = 37 (18.1 bits), Expect = 2.7e-51, Sum P(6) = 2.7e-51
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 291 GNTLRQTFENQVNRILNDARDK 312
G ++QTF+N + I ++ D+
Sbjct: 1213 GERIKQTFKNDLFVIWSEDNDE 1234
Score = 37 (18.1 bits), Expect = 3.2e-23, Sum P(6) = 3.2e-23
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 129 DSGPYQWISPGDTKVVVEHGSLL 151
D P + P D +++ H SLL
Sbjct: 1155 DPDPRSTVIPEDEEIIQLHFSLL 1177
>ASPGD|ASPL0000054301 [details] [associations]
symbol:AN0809 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 EMBL:BN001308 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACD01000013 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
RefSeq:XP_658413.1 STRING:Q5BF71 EnsemblFungi:CADANIAT00001852
GeneID:2876587 KEGG:ani:AN0809.2 Uniprot:Q5BF71
Length = 1745
Score = 757 (271.5 bits), Expect = 7.3e-148, Sum P(5) = 7.3e-148
Identities = 149/240 (62%), Positives = 182/240 (75%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNR 304
G SIGIGDTI + QT I+ ++K K +V E+ A LEP PG +R+TFE++V+
Sbjct: 681 GFSIGIGDTIPNDQTIQAIEECVRKRKLEVEEITATATQNKLEPLPGMNVRETFESKVSV 740
Query: 305 ILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
LN ARD+ G + +KSL + NN M +GSKGS INISQ+ A VGQQ VEGKRI FGF+
Sbjct: 741 ALNTARDEAGTATEKSLKDLNNAVQMSRSGSKGSIINISQMTAVVGQQMVEGKRIAFGFK 800
Query: 365 KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 424
RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM GREGLIDTAVKTAETGYIQR+
Sbjct: 801 YRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRK 860
Query: 425 LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
L+KA+E VMV YD TVRNS+G +IQ YGEDGL G +EHQ++D + S +KF++++R D
Sbjct: 861 LVKALEEVMVKYDGTVRNSLGDIIQFIYGEDGLDGAHIEHQKVDILTCSDEKFKERFRID 920
Score = 683 (245.5 bits), Expect = 7.3e-148, Sum P(5) = 7.3e-148
Identities = 147/320 (45%), Positives = 208/320 (65%)
Query: 1091 LFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDF---DPTRISPWLLRIELDRKRMT 1147
L +T T IYYDPD Q TVI D++ V Y+ +P+ D +R S WLLRI L R ++
Sbjct: 1163 LRSITEATEIYYDPDIQTTVIENDRDMVESYFIIPEDVNDDSSRQSKWLLRIILSRAKLL 1222
Query: 1148 DKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDD 1207
DK LT++ ++ KI + D+ IF+D+NA++ V+RIR + D K +DE+D D +E D
Sbjct: 1223 DKGLTVQDVATKIKQAYPRDIAVIFSDNNADEQVIRIRQIQ--DYK-EDEDD--DDIEYD 1277
Query: 1208 MFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFK------AIADWLL 1261
+ L+ +E ++L + L+G+ + + +++ KK+I + E G +W+L
Sbjct: 1278 VTLKKLEQHLLDTLNLRGVPGVERAFIN-----EKKKIRVQEDGALTDEQSDPLCREWIL 1332
Query: 1262 ETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYR 1321
ET G+SL +VL+ VD RT+SN E+F+V GIEA R +V +E VL F G YVN+R
Sbjct: 1333 ETSGSSLAEVLAIPGVDATRTYSNQFIEVFEVFGIEAARAAVLREFTVVLSFDGSYVNHR 1392
Query: 1322 HLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSE 1381
HLALL DVMT +G+L +TRHGINR D GALMRCSFEETV++L++AAA E D RGVSE
Sbjct: 1393 HLALLVDVMTMRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELDDCRGVSE 1452
Query: 1382 NIIMGQLPRMGTGCFDLLLD 1401
N+I+GQ+ GTG FD+ LD
Sbjct: 1453 NLILGQMAPAGTGEFDIYLD 1472
Score = 340 (124.7 bits), Expect = 8.8e-102, Sum P(4) = 8.8e-102
Identities = 87/211 (41%), Positives = 125/211 (59%)
Query: 681 DV-ISELEKEMVDHFSWKQL----RRIFNEDVLRELMGSGDVISELEKEWEKLCEDREAL 735
DV + +LE+ ++D + + + R NE + G + E + + LC RE +
Sbjct: 1277 DVTLKKLEQHLLDTLNLRGVPGVERAFINEKKKIRVQEDGALTDE---QSDPLC--REWI 1331
Query: 736 REIFSSGESNVVLPCNLMEVIFI--LQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTV 793
E +SG S L EV+ I + + + N+ + ++ + + R +V +E V
Sbjct: 1332 LE--TSGSS-------LAEVLAIPGVDATRTYSNQFIEVF-EVFGIEAARAAVLREFTVV 1381
Query: 794 LQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAH 853
L F G YVN+RHLALL DVMT +G+L +TRHGINR D GALMRCSFEETV++L++AAA
Sbjct: 1382 LSFDGSYVNHRHLALLVDVMTMRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAF 1441
Query: 854 AEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
E D RGVSEN+I+GQ+ GTG FD+ LD
Sbjct: 1442 GELDDCRGVSENLILGQMAPAGTGEFDIYLD 1472
Score = 338 (124.0 bits), Expect = 2.7e-122, Sum P(4) = 2.7e-122
Identities = 67/102 (65%), Positives = 77/102 (75%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+ A VGQQ VEGKRI FGF+ RTLPHF KDDY PESRGFVENSYL GLTP+EFFFHAM
Sbjct: 779 SQMTAVVGQQMVEGKRIAFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 838
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
GREGLIDTAVKTAET + L + + YD +N++
Sbjct: 839 AGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSL 880
Score = 337 (123.7 bits), Expect = 2.7e-122, Sum P(4) = 2.7e-122
Identities = 70/179 (39%), Positives = 97/179 (54%)
Query: 72 QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHS--THPDDED 129
+EQ+MNI+M++P WDG +P P I KP+P WTGKQ+ S++ P +N+ RT S P E
Sbjct: 557 KEQVMNIMMWVPDWDGVIPPPAIFKPRPRWTGKQMISMVFPSGLNLMRTDSKGAAPSSEK 616
Query: 130 SGPYQWISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQT 189
P Q D V++ G L+ G+ HI F E G + F+ Q
Sbjct: 617 YSPLQ-----DGNVLIHEGQLMYGMLNKKIVGASGGGVIHIIFNEYGADAAVAFFNGAQA 671
Query: 190 VVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSI 248
+VN WLL G SIGIGDTI + QT I+ ++K K +V E+ A LEP PG ++
Sbjct: 672 IVNYWLLHNGFSIGIGDTIPNDQTIQAIEECVRKRKLEVEEITATATQNKLEPLPGMNV 730
Score = 262 (97.3 bits), Expect = 1.3e-93, Sum P(4) = 1.3e-93
Identities = 57/121 (47%), Positives = 76/121 (62%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
+V +E VL F G YVN+RHLALL DVMT +G+L +TRHGINR D GALMRCSFEETV
Sbjct: 1373 AVLREFTVVLSFDGSYVNHRHLALLVDVMTMRGYLTPVTRHGINRADNGALMRCSFEETV 1432
Query: 576 DVLMDAAAHAEADPMRGYIQRRLIKAMESVMV-HYDCTV-RNSVGQLIQ--LRYGEDGLC 631
++L++AAA E D RG + ++ M +D + +N + ++ RYG G
Sbjct: 1433 EILLEAAAFGELDDCRGVSENLILGQMAPAGTGEFDIYLDQNMLNTVVSNNARYGVMGAL 1492
Query: 632 G 632
G
Sbjct: 1493 G 1493
Score = 215 (80.7 bits), Expect = 4.9e-117, Sum P(5) = 4.9e-117
Identities = 52/127 (40%), Positives = 80/127 (62%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQR+L+KA+E VMV YD TVRNS+G +IQ YGEDGL G +EHQ++D + S +KF+
Sbjct: 855 GYIQRKLVKALEEVMVKYDGTVRNSLGDIIQFIYGEDGLDGAHIEHQKVDILTCSDEKFK 914
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMG-SGDVISELEKEMVDHFSWKQLRRIFNEDVLRE 710
+++R D + DVL + +GDV E+++ + D W++L + +V+R
Sbjct: 915 ERFRIDLMDPALS---LGPDVLEQANEIAGDV--EVQRYL-DQ-EWEELLKA--REVVRH 965
Query: 711 LM-GSGD 716
+ G+ D
Sbjct: 966 VAKGTED 972
Score = 158 (60.7 bits), Expect = 5.4e-93, Sum P(5) = 5.4e-93
Identities = 34/81 (41%), Positives = 49/81 (60%)
Query: 1529 LDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDF---DPTRISPWLLRIELDRKRMT 1585
L +T T IYYDPD Q TVI D++ V Y+ +P+ D +R S WLLRI L R ++
Sbjct: 1163 LRSITEATEIYYDPDIQTTVIENDRDMVESYFIIPEDVNDDSSRQSKWLLRIILSRAKLL 1222
Query: 1586 DKKLTMEAISEKINAGFGDDL 1606
DK LT++ ++ KI + D+
Sbjct: 1223 DKGLTVQDVATKIKQAYPRDI 1243
Score = 121 (47.7 bits), Expect = 7.3e-148, Sum P(5) = 7.3e-148
Identities = 24/57 (42%), Positives = 39/57 (68%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA 1009
V G+D +SK+A E+AT+LF+ +RS L K + Y ++ AF+ ++G IE+RF +A
Sbjct: 1020 VRGDDPISKEAQESATMLFKAQLRSRLAFKRLVTQYSMNKLAFQHVLGAIESRFAKA 1076
Score = 105 (42.0 bits), Expect = 1.8e-87, Sum P(5) = 1.8e-87
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 1614 DKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDD 1673
DK LT++ ++ KI + D+ IF+D+NA++ V+RIR + D K +DE+D D +E D
Sbjct: 1223 DKGLTVQDVATKIKQAYPRDIAVIFSDNNADEQVIRIRQIQ--DYK-EDEDD--DDIEYD 1277
Query: 1674 MFLRCIEE 1681
+ L+ +E+
Sbjct: 1278 VTLKKLEQ 1285
Score = 84 (34.6 bits), Expect = 7.3e-148, Sum P(5) = 7.3e-148
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 706 DVLR---ELMGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
DVL E+ G +V L++EWE+L + RE +R + E ++ LP N+ ++
Sbjct: 931 DVLEQANEIAGDVEVQRYLDQEWEELLKAREVVRHVAKGTEDSMPLPINIQRIL 984
Score = 61 (26.5 bits), Expect = 8.8e-102, Sum P(4) = 8.8e-102
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 917 SMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
S +P ++ ++PAY + +P PGFSP+
Sbjct: 1611 SFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPT 1646
Score = 61 (26.5 bits), Expect = 8.8e-102, Sum P(4) = 8.8e-102
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 914 TPSS-MSPQMTP----WAQSTPAYNALMSP---GAAMTPGGP---GFSPS 952
+P+S SP+ TP W+ ++P + SP G+ +PGGP G+SP+
Sbjct: 1685 SPTSPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPGGPTSPGYSPT 1734
Score = 56 (24.8 bits), Expect = 3.0e-101, Sum P(4) = 3.0e-101
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPSVAG 955
T SP +A ++PAY+ +P P +SP+ G
Sbjct: 1601 TSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPG 1642
Score = 54 (24.1 bits), Expect = 1.6e-92, Sum P(4) = 1.6e-92
Identities = 25/98 (25%), Positives = 42/98 (42%)
Query: 244 PGHSIGI--GDTIADPQTYLEIQ---MAIKKAKEDVIEV--IQKAHNMDLE-PTPGNTLR 295
PG +G+ +I +P T + + A +K + V +++ N+ TP T+
Sbjct: 1080 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMTVY 1139
Query: 296 QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVA 333
Q E A DK G +S EY NL+++ A
Sbjct: 1140 QEPER--------AHDKEGAKQLRSAVEYTNLRSITEA 1169
Score = 52 (23.4 bits), Expect = 7.3e-148, Sum P(5) = 7.3e-148
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 29 YEESIILGMDPKFARPDWM 47
+E+ I+G+ +ARP+WM
Sbjct: 227 HEDVRIMGLSNDYARPEWM 245
Score = 49 (22.3 bits), Expect = 1.6e-100, Sum P(4) = 1.6e-100
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ ++P Y+ SP + +P P FSP+
Sbjct: 1632 TSPSYSPTSPGFSPTSPNYSPT-SP--SFSPTSPAFSPT 1667
Score = 47 (21.6 bits), Expect = 2.6e-100, Sum P(4) = 2.6e-100
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS---VAGEDQLS 960
T SP ++ ++P+++ SP A +P P +SP+ + G LS
Sbjct: 1639 TSPGFSPTSPNYSPTSPSFSPT-SP--AFSPTSPSYSPTSPAIGGARHLS 1685
Score = 47 (21.6 bits), Expect = 6.7e-92, Sum P(4) = 6.7e-92
Identities = 23/111 (20%), Positives = 45/111 (40%)
Query: 273 DVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 332
+++ Q + E P + +R+ FE+ + + D K++ + N +
Sbjct: 282 EIVRANQNVQRCEQEGAPEHVVRE-FESLLQYHIATYMDNDIAGQPKAMQKSNRPVKAIR 340
Query: 333 AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTL--PHFIKDDYG-PES 380
+ KG + +QN+ GKR+ F R P+ D+ G P+S
Sbjct: 341 SRLKGKEGRL--------RQNLMGKRVDFSARTVITGDPNLSLDEVGVPKS 383
Score = 41 (19.5 bits), Expect = 4.6e-61, Sum P(3) = 4.6e-61
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1017 QQNVEGKRIPFGFRKRTL--PHFIKDDYG-PES 1046
+QN+ GKR+ F R P+ D+ G P+S
Sbjct: 351 RQNLMGKRVDFSARTVITGDPNLSLDEVGVPKS 383
Score = 38 (18.4 bits), Expect = 6.1e-05, Sum P(4) = 6.1e-05
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 1221 MTLQGIEAIGKVYMHLPQTDSKKRIIITESGE 1252
+T IE + ++ M+ P R I+ ++GE
Sbjct: 394 VTPYNIEKLQQLVMNGPNEHPGARYIVRDNGE 425
Score = 37 (18.1 bits), Expect = 2.1e-80, Sum P(5) = 2.1e-80
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 1681 ETDRSFVKVDFVEPKDL 1697
E DR V+ F+ P+D+
Sbjct: 1184 ENDRDMVESYFIIPEDV 1200
>UNIPROTKB|G4MT89 [details] [associations]
symbol:MGG_04652 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0043581 EMBL:CM001232 GO:GO:0003899
GO:GO:0005665 KO:K03006 RefSeq:XP_003713642.1
EnsemblFungi:MGG_04652T0 GeneID:2678092 KEGG:mgr:MGG_04652
Uniprot:G4MT89
Length = 1757
Score = 759 (272.2 bits), Expect = 1.3e-142, Sum P(5) = 1.3e-142
Identities = 150/240 (62%), Positives = 182/240 (75%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNR 304
GHSIGIGDTI DP T +IQ I + K +V E+ A LE PG +R+TFE++V++
Sbjct: 672 GHSIGIGDTIPDPVTIEKIQAHINEQKAEVAELTDLATTNRLEALPGMNIRETFESKVSK 731
Query: 305 ILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
LN AR+K G + +KSL + NN M +GSKGS+INISQ+ A VGQQ VEGKRIPFGF+
Sbjct: 732 ALNTAREKAGTTTEKSLKDINNAVTMSRSGSKGSSINISQMTALVGQQIVEGKRIPFGFK 791
Query: 365 KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 424
RTLPHF KDD+ PE+RGFVENSYL GLTPSEFFFHAM GREGLIDTAVKTAETGYIQRR
Sbjct: 792 YRTLPHFTKDDFSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRR 851
Query: 425 LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
L+KA+E V YD TVRNS+G +IQ YGEDGL G A+E Q++D + +S+ KF+ Y+ D
Sbjct: 852 LVKALEDVAAKYDGTVRNSLGDIIQFIYGEDGLDGMAIEKQKMDHLNISNGKFDGMYKLD 911
Score = 744 (267.0 bits), Expect = 1.3e-142, Sum P(5) = 1.3e-142
Identities = 180/461 (39%), Positives = 272/461 (59%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVI 1012
V G+D +SK+AN N+++LF+ +RS L K +A RL+ AF+ ++GE+E+R+Q++ V
Sbjct: 1013 VPGDDPISKEANYNSSILFKAQLRSRLAFKRLAVRERLNRIAFDHVIGEMESRWQRSFVS 1072
Query: 1013 A--CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 1070
VG + P HF + G + ++ +E M
Sbjct: 1073 PGEMVGVLAAQSIGEPATQMTLNTFHFTGISSKNVTLGVPRLKEILNVS-AEIKTPGMVV 1131
Query: 1071 R---EGLIDTAVKTAETVNVLVF---LFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEM 1124
R + D + A+T+ LV L VTA T IYYDP+ Q T I ED + + +Y +
Sbjct: 1132 RLDPKMYPDFKQENAKTLRSLVEHTNLRSVTAMTEIYYDPEIQTTTIDEDADMLEGHYLI 1191
Query: 1125 PDF---DPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLV 1181
P+ +P+ S WLLR+ LDR++M DK L +E ++ I + DL + +D+NA++ V
Sbjct: 1192 PEEHQDEPSNQSRWLLRLTLDRQKMLDKNLHIEDVAASIKGAYASDLVVVHSDNNADEQV 1251
Query: 1182 LRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP-QTD 1240
+R+R + D + +D + +E D L+ +E +ML +TL+GI+ I + +++ +
Sbjct: 1252 IRMRHVIKGDEEDKDGRN----IESDQILKRLEEHMLDGLTLRGIKGIERAFLNKDTRLV 1307
Query: 1241 SKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVR 1300
K + S + +W L+T GTSL +VL VD VRT +ND+ +I +LGIEA R
Sbjct: 1308 VKPDGSLLNSKDAPECEEWYLDTQGTSLRQVLCVDGVDSVRTLTNDLYQIVDLLGIEAAR 1367
Query: 1301 KSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1360
++ E+ VL F G YVN+RHLALL DVMT +G + A+TRHGINR DTGALMRCSFEET
Sbjct: 1368 TALLGELTQVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALMRCSFEET 1427
Query: 1361 VDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1401
V++L++AAA E D RG+SEN+++GQL MGTG F++LLD
Sbjct: 1428 VEILLEAAAIGELDDCRGISENVMLGQLAPMGTGAFEVLLD 1468
Score = 344 (126.2 bits), Expect = 2.1e-63, Sum P(4) = 2.1e-63
Identities = 96/240 (40%), Positives = 132/240 (55%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+ A VGQQ VEGKRIPFGF+ RTLPHF KDD+ PE+RGFVENSYL GLTPSEFFFHAM
Sbjct: 770 SQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDFSPEARGFVENSYLRGLTPSEFFFHAM 829
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV------IPEDQEFVNVYY 1122
GREGLIDTAVKTAET + L + + A YD +N++ I + +
Sbjct: 830 AGREGLIDTAVKTAETGYIQRRLVKALEDVAAKYDGTVRNSLGDIIQFIYGEDGLDGMAI 889
Query: 1123 EMPDFDPTRISPWLL--RIELDRKRMTDKKLTMEAISEKINAGFGDD-LNCIFNDD---- 1175
E D IS +LD T + + A+ E N FGD + + +++
Sbjct: 890 EKQKMDHLNISNGKFDGMYKLDLMTATRPR-ELNAL-EYGNEIFGDPAVQQLLDEEYDAI 947
Query: 1176 NAEKLVLR-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYM 1234
A++ ++R I DD+ MQ + +E+ L I+ SD+ Q + + K ++
Sbjct: 948 KADRQLIREINYKKKDDNDMQLPLNVARVIENAKKLFKIDDAQRSDLKPQDVIPVVKGFL 1007
Score = 337 (123.7 bits), Expect = 4.7e-100, Sum P(5) = 4.7e-100
Identities = 77/180 (42%), Positives = 110/180 (61%)
Query: 776 IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
++ + + R ++ E+ VL F G YVN+RHLALL DVMT +G + A+TRHGINR DTGAL
Sbjct: 1360 LLGIEAARTALLGELTQVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGAL 1419
Query: 836 MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
MRCSFEETV++L++AAA E D RG+SEN+++GQL MGTG F++LLD + +E
Sbjct: 1420 MRCSFEETVEILLEAAAIGELDDCRGISENVMLGQLAPMGTGAFEVLLDPKM----LETV 1475
Query: 896 LATXXXXXXXXXXXXXXXTPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPSVAG 955
++ SS TP+ +P ++ + G A +P FSP ++G
Sbjct: 1476 VSNNARMGLMPGLTVKG---SSAEGAATPYDTGSPMGDSGYNLGMA-SPTMGNFSPIMSG 1531
Score = 308 (113.5 bits), Expect = 5.4e-111, Sum P(4) = 5.4e-111
Identities = 68/177 (38%), Positives = 95/177 (53%)
Query: 72 QEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSG 131
+E +M+I++++P WDG +PQP IL+P+P WTGKQ+ S++IP V +TH +
Sbjct: 557 KEAVMDIMLWVPDWDGIIPQPAILRPRPRWTGKQIISMVIPDFV------TTHQGGD--- 607
Query: 132 PYQWISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVV 191
W D ++++ G L+ G+ HIC+ E G F Q VV
Sbjct: 608 ---WNPLNDDALLIQSGELMFGLLTKKNVGAASGGIIHICYNEQGPARAMAFLNGCQRVV 664
Query: 192 NNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSI 248
N WLL GHSIGIGDTI DP T +IQ I + K +V E+ A LE PG +I
Sbjct: 665 NYWLLHNGHSIGIGDTIPDPVTIEKIQAHINEQKAEVAELTDLATTNRLEALPGMNI 721
Score = 254 (94.5 bits), Expect = 6.9e-91, Sum P(5) = 6.9e-91
Identities = 50/78 (64%), Positives = 61/78 (78%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
T++ E+ VL F G YVN+RHLALL DVMT +G + A+TRHGINR DTGALMRCSFEET
Sbjct: 1368 TALLGELTQVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALMRCSFEET 1427
Query: 575 VDVLMDAAAHAEADPMRG 592
V++L++AAA E D RG
Sbjct: 1428 VEILLEAAAIGELDDCRG 1445
Score = 202 (76.2 bits), Expect = 5.4e-111, Sum P(4) = 5.4e-111
Identities = 47/113 (41%), Positives = 67/113 (59%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRL+KA+E V YD TVRNS+G +IQ YGEDGL G A+E Q++D + +S+ KF+
Sbjct: 846 GYIQRRLVKALEDVAAKYDGTVRNSLGDIIQFIYGEDGLDGMAIEKQKMDHLNISNGKFD 905
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFN 704
Y+ D + R + + E+ G V L++E + +QL R N
Sbjct: 906 GMYKLDLMTATRPRELNALEYGNEIFGDPAVQQLLDEEYDAIKADRQLIREIN 958
Score = 165 (63.1 bits), Expect = 3.8e-82, Sum P(5) = 3.8e-82
Identities = 36/97 (37%), Positives = 55/97 (56%)
Query: 1513 QDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDF---DPTR 1569
Q+ +R + + L VTA T IYYDP+ Q T I ED + + +Y +P+ +P+
Sbjct: 1143 QENAKTLRSLVEH-TNLRSVTAMTEIYYDPEIQTTTIDEDADMLEGHYLIPEEHQDEPSN 1201
Query: 1570 ISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDL 1606
S WLLR+ LDR++M DK L +E ++ I + DL
Sbjct: 1202 QSRWLLRLTLDRQKMLDKNLHIEDVAASIKGAYASDL 1238
Score = 127 (49.8 bits), Expect = 2.0e-05, Sum P(4) = 2.0e-05
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQNTV 1548
V+ + + P I++PQ N P+MGIVQDTL K+ +RDVFL K + + PD + +
Sbjct: 515 VKELCMVPLNIVSPQRNSPLMGIVQDTLAGTYKLCRRDVFLTKEAVMDIMLWVPD-WDGI 573
Query: 1549 IPE 1551
IP+
Sbjct: 574 IPQ 576
Score = 92 (37.4 bits), Expect = 1.4e-74, Sum P(5) = 1.4e-74
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 1614 DKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQD----EEDAVDK 1669
DK L +E ++ I + DL + +D+NA++ V+R+R + D + +D E D + K
Sbjct: 1218 DKNLHIEDVAASIKGAYASDLVVVHSDNNADEQVIRMRHVIKGDEEDKDGRNIESDQILK 1277
Query: 1670 -----MEDDMFLRCIEETDRSFVKVD 1690
M D + LR I+ +R+F+ D
Sbjct: 1278 RLEEHMLDGLTLRGIKGIERAFLNKD 1303
Score = 62 (26.9 bits), Expect = 1.3e-142, Sum P(5) = 1.3e-142
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 710 ELMGSGDVISELEKEWEKLCEDREALREI-FSSGESN-VVLPCNLMEVI 756
E+ G V L++E++ + DR+ +REI + + N + LP N+ VI
Sbjct: 929 EIFGDPAVQQLLDEEYDAIKADRQLIREINYKKKDDNDMQLPLNVARVI 977
Score = 57 (25.1 bits), Expect = 6.9e-91, Sum P(5) = 6.9e-91
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPSVAGEDQLS 960
+P++ +P Q +PA + SPG +P P FSP G + S
Sbjct: 1698 SPNAHYSPTSPSFQRSPAQASPTSPGP-YSPTSPSFSPRSPGRNNRS 1743
Score = 52 (23.4 bits), Expect = 2.5e-05, Sum P(4) = 2.5e-05
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 1124 MPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDD 1175
+PD+D P +LR R R T K++ I + + G D N + NDD
Sbjct: 567 VPDWDGIIPQPAILR---PRPRWTGKQIISMVIPDFVTTHQGGDWNPL-NDD 614
Score = 45 (20.9 bits), Expect = 1.3e-142, Sum P(5) = 1.3e-142
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 17 TSVYAWYVVPY-PYEESIILGMDPKFARPDWM 47
T A +++ + P ++ +G++ +ARP+W+
Sbjct: 214 TPEQAHHILKHIPEDDLWKMGLNKDYARPEWL 245
Score = 44 (20.5 bits), Expect = 8.5e-68, Sum P(4) = 8.5e-68
Identities = 31/123 (25%), Positives = 55/123 (44%)
Query: 1579 LDRKRMTDKKLTMEAISE-KINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDD-LNC 1636
LD + +K+ IS K + + DL T P + + A+ E N FGD +
Sbjct: 884 LDGMAIEKQKMDHLNISNGKFDGMYKLDLMTATRPRE----LNAL-EYGNEIFGDPAVQQ 938
Query: 1637 IFNDD----NAEKLVLR-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEETDRSFVKVDF 1691
+ +++ A++ ++R I DD+ MQ + +E+ L I++ RS +K
Sbjct: 939 LLDEEYDAIKADRQLIREINYKKKDDNDMQLPLNVARVIENAKKLFKIDDAQRSDLKPQD 998
Query: 1692 VEP 1694
V P
Sbjct: 999 VIP 1001
Score = 42 (19.8 bits), Expect = 2.5e-89, Sum P(5) = 2.5e-89
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 916 SSMSPQMTPWAQSTPAYN-------ALMSPGAAMTPGGPGFSPSVA 954
S SP +P ++P Y + SP A +P P F S A
Sbjct: 1670 SPASPSFSPGGATSPMYYVGSPQHASPTSPNAHYSPTSPSFQRSPA 1715
Score = 38 (18.4 bits), Expect = 6.6e-89, Sum P(5) = 6.6e-89
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 915 PSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPSVA 954
P S + ++ ++PA +P P FSP A
Sbjct: 1642 PGSPTGGDNHYSPTSPAQFGASPTSPLYSPASPSFSPGGA 1681
Score = 37 (18.1 bits), Expect = 1.3e-142, Sum P(5) = 1.3e-142
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 188 QTVVNNWLLLEGHSIGIGDTIADPQTYLE 216
+TV+ + H +G+ +IA TY E
Sbjct: 364 RTVITGDANISLHEVGVPRSIARTLTYPE 392
>UNIPROTKB|I3LJR4 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04992
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GeneTree:ENSGT00700000104490 EMBL:FP565284
Ensembl:ENSSSCT00000029425 Uniprot:I3LJR4
Length = 1010
Score = 1046 (373.3 bits), Expect = 4.5e-127, Sum P(3) = 4.5e-127
Identities = 215/315 (68%), Positives = 250/315 (79%)
Query: 185 GNIQTVVNNWLLLEG----HSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 240
G+ + VV N L+ G S+G +YLE+ I + I+ + +N L
Sbjct: 624 GDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTV--INNWLL 681
Query: 241 EPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFEN 300
GH+IGIGD+IAD +TY +IQ IKKAK+DVIEVI+KAHN +LEPTPGNTLRQTFEN
Sbjct: 682 --IEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFEN 739
Query: 301 QVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP 360
QVNRILNDARDKTG SA+KSL+EYNN K+MVV+G+KGS INISQVIA VGQQNVEGKRIP
Sbjct: 740 QVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799
Query: 361 FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGY 420
FGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGY
Sbjct: 800 FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859
Query: 421 IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDK 480
IQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+ S+K FE K
Sbjct: 860 IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKK 919
Query: 481 YRFDPSNERPTLRNV 495
+RFD +NER R +
Sbjct: 920 FRFDYTNERALRRTL 934
Score = 659 (237.0 bits), Expect = 2.3e-102, Sum P(3) = 2.3e-102
Identities = 117/175 (66%), Positives = 144/175 (82%)
Query: 74 QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
++MN+LMFL WDGK+PQP ILKP+PLWTGKQ+FSLIIPG++N RTHSTHPDDEDSGPY
Sbjct: 559 EVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 618
Query: 134 QWISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNN 193
+ ISPGDTKVVVE+G L+MGI HI +LE+GH++ FY NIQTV+NN
Sbjct: 619 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 678
Query: 194 WLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSI 248
WLL+EGH+IGIGD+IAD +TY +IQ IKKAK+DVIEVI+KAHN +LEPTPG+++
Sbjct: 679 WLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTL 733
Score = 390 (142.3 bits), Expect = 2.3e-102, Sum P(3) = 2.3e-102
Identities = 94/198 (47%), Positives = 122/198 (61%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+QVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EFFFHAM
Sbjct: 782 SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM 841
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV-------IPEDQ---EFV 1118
GGREGLIDTAVKTAET + L + + + YD +N++ ED E V
Sbjct: 842 GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV 901
Query: 1119 NVYYEMPDFDPT-RISPWLLRIELDRKRMTDKKLTMEAISEKI-NAGFGDDLNCIFNDDN 1176
+ + P+ + R + +R + L + + + + NA ++L F
Sbjct: 902 E-FQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR 960
Query: 1177 AEKLVLRIRIMNSDDSKM 1194
++ VLR+ I + DSK+
Sbjct: 961 EDREVLRV-IFPTGDSKV 977
Score = 315 (115.9 bits), Expect = 1.8e-94, Sum P(3) = 1.8e-94
Identities = 64/125 (51%), Positives = 92/125 (73%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRLIK+MESVMV YD TVRNS+ Q++QLRYGEDGL GE+VE Q + T+ S+K FE
Sbjct: 858 GYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFE 917
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
K+RFD +NER LRR ED++++++ + + +ELE+E ++++R + +VLR +
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELERE------FERMRE--DREVLRVI 969
Query: 712 MGSGD 716
+GD
Sbjct: 970 FPTGD 974
Score = 167 (63.8 bits), Expect = 4.5e-127, Sum P(3) = 4.5e-127
Identities = 31/75 (41%), Positives = 54/75 (72%)
Query: 687 EKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREIFSSGESNV 746
+K D+ + + LRR ED++++++ + + +ELE+E+E++ EDRE LR IF +G+S V
Sbjct: 918 KKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRVIFPTGDSKV 977
Query: 747 VLPCNLMEVIFILQR 761
VLPCNL+ +I+ Q+
Sbjct: 978 VLPCNLLRMIWNAQK 992
Score = 166 (63.5 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 1531
++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++
Sbjct: 515 IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557
Score = 97 (39.2 bits), Expect = 4.5e-127, Sum P(3) = 4.5e-127
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 30 EESIILGMDPKFARPDWMXXXXXXXXXXXXXXXXXMHGSARNQEQMMNIL 79
EE +LGM+P++ARP+WM M GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280
Score = 37 (18.1 bits), Expect = 9.3e-121, Sum P(3) = 9.3e-121
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 174 ELGHEVCGRFYGNIQ 188
E GH CGR+ I+
Sbjct: 178 EKGHGGCGRYQPRIR 192
>WB|WBGene00004411 [details] [associations]
symbol:rpc-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0040035 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 eggNOG:COG0086
HSSP:P04050 GO:GO:0032549 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:FO080771 PIR:T34157 RefSeq:NP_501127.2
ProteinModelPortal:Q18566 SMR:Q18566 STRING:Q18566 PaxDb:Q18566
EnsemblMetazoa:C42D4.8 GeneID:177491 KEGG:cel:CELE_C42D4.8
UCSC:C42D4.8 CTD:177491 WormBase:C42D4.8 InParanoid:Q18566
NextBio:897062 Uniprot:Q18566
Length = 1400
Score = 530 (191.6 bits), Expect = 2.2e-69, Sum P(2) = 2.2e-69
Identities = 113/246 (45%), Positives = 150/246 (60%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNR 304
G SIGIGD Q E + + I++ L+ PG T +T E+ + R
Sbjct: 691 GFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILR 750
Query: 305 ILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
L+ RD G ++L++YN M V GSKGS INISQ+IACVGQQ + G R P GF
Sbjct: 751 ELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFE 810
Query: 365 KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 424
+R+LPHF + PE++GFV NS+ +GLTP+EFFFH MGGREGL+DTAVKTAETGY+QRR
Sbjct: 811 ERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRR 870
Query: 425 LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
L+K +E + YD TVR+SVG +I+ +GEDGL +E + V +H E
Sbjct: 871 LVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHV-LEHAKNIQ 929
Query: 485 PSNERP 490
+ E+P
Sbjct: 930 TTKEQP 935
Score = 274 (101.5 bits), Expect = 2.4e-47, Sum P(3) = 2.4e-47
Identities = 54/102 (52%), Positives = 72/102 (70%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+IACVGQQ + G R P GF +R+LPHF + PE++GFV NS+ +GLTP+EFFFH M
Sbjct: 789 SQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTM 848
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTV 1110
GGREGL+DTAVKTAET + L + + YD +++V
Sbjct: 849 GGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSV 890
Score = 273 (101.2 bits), Expect = 2.2e-69, Sum P(2) = 2.2e-69
Identities = 71/220 (32%), Positives = 121/220 (55%)
Query: 1185 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1244
+I+ + M + K+ M ++ ++ + L+++ ++GI ++ + +H D KK
Sbjct: 1179 KIVAHGKTMMAIRPPSTSKLSKTMTMQILKYS-LANVVVKGIPSVNRCVIH---ADEKK- 1233
Query: 1245 IIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVE 1304
G+F ++ L+E GT VLS VDP +T N+ + VLGIEA R +
Sbjct: 1234 ------GDFYSL---LVE--GTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCII 1282
Query: 1305 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 1364
E+ + +G+ ++ RH+ LL DVMT +G ++ ITR+G+ + L+ SFE+T+D L
Sbjct: 1283 NEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHL 1342
Query: 1365 MDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
+AA ++ D + GVSE IIMG +GTG F L+ +K
Sbjct: 1343 FEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKYDK 1382
Score = 194 (73.4 bits), Expect = 4.6e-61, Sum P(2) = 4.6e-61
Identities = 41/119 (34%), Positives = 70/119 (58%)
Query: 769 NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 828
N + ++ + + R + E+ + +G+ ++ RH+ LL DVMT +G ++ ITR+G+
Sbjct: 1264 NALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLV 1323
Query: 829 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 887
+ L+ SFE+T+D L +AA ++ D + GVSE IIMG +GTG F L+ +K
Sbjct: 1324 KMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKYDK 1382
Score = 140 (54.3 bits), Expect = 2.2e-33, Sum P(3) = 2.2e-33
Identities = 44/171 (25%), Positives = 81/171 (47%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL---CGEAVEHQRID-TVALSH 647
GY+QRRL+K +E + YD TVR+SVG +I+ +GEDGL EA + +D T L H
Sbjct: 865 GYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEH 924
Query: 648 KKFEDKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDV 707
K + P +L + ++ ++ G ++ E + K+ ++ N
Sbjct: 925 AKNIQTTKEQPIPVDKLDEVLKAEIQKKFKGKYVHFADKLSEYITQTEIKKSKKWQNG-- 982
Query: 708 LRELMGSGDVISELEKEWEKLCEDREALR-EIFSSGESNVVLPCNLMEVIF 757
+ G+ + KE K+C++ EA + + ++ C+ +E+ +
Sbjct: 983 -KAHCGNHETADLKTKESCKICKNLEAYKTSLLANSCLTKTQLCSFIELCY 1032
Score = 133 (51.9 bits), Expect = 1.2e-54, Sum P(2) = 1.2e-54
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 520 EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 579
E+ + +G+ ++ RH+ LL DVMT +G ++ ITR+G+ + L+ SFE+T+D L
Sbjct: 1284 EIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLF 1343
Query: 580 DAAAHAEADPMRG 592
+AA ++ D + G
Sbjct: 1344 EAAFFSQRDVIHG 1356
Score = 107 (42.7 bits), Expect = 2.4e-47, Sum P(3) = 2.4e-47
Identities = 37/160 (23%), Positives = 63/160 (39%)
Query: 88 KMPQPCILKPKPLWTGKQVFSLII-PGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVE 146
++P P I +P LWTGKQ+ LII P + + T + +G + S D+ V++
Sbjct: 579 RIPPPAIRRPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSK-DSYVIIR 637
Query: 147 HGSLLMG-IXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIG 205
+ LL G + ++ + G + + + +L G SIGIG
Sbjct: 638 NSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIG 697
Query: 206 DTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPG 245
D Q E + + I++ L+ PG
Sbjct: 698 DVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPG 737
Score = 42 (19.8 bits), Expect = 1.5e-40, Sum P(3) = 1.5e-40
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 682 VISELEKEMV-DHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKL 728
V+SE++ D + K + + DVL++ G L + WE L
Sbjct: 262 VVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHL 309
>FB|FBgn0030687 [details] [associations]
symbol:CG17209 species:7227 "Drosophila melanogaster"
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:AE014298 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
GO:GO:0032549 GeneTree:ENSGT00700000104490 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:NP_001096987.2 UniGene:Dm.14839
ProteinModelPortal:A8JUY3 SMR:A8JUY3 STRING:A8JUY3
EnsemblMetazoa:FBtr0300811 GeneID:32524 KEGG:dme:Dmel_CG17209
FlyBase:FBgn0030687 OrthoDB:EOG4BNZSM PhylomeDB:A8JUY3
GenomeRNAi:32524 NextBio:778916 Bgee:A8JUY3 Uniprot:A8JUY3
Length = 1383
Score = 513 (185.6 bits), Expect = 1.0e-68, Sum P(2) = 1.0e-68
Identities = 121/302 (40%), Positives = 167/302 (55%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNR 304
G S GI D + ++ + E I+ L+ PG T +T E+ + R
Sbjct: 693 GFSFGISDVTPSKKLLQHKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVMLR 752
Query: 305 ILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
L+ R++ + L N+ M ++GSKGSNINISQ+IACVGQQ + GKR+P GF
Sbjct: 753 ELSAIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFE 812
Query: 365 KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 424
R LPHF + P +RGFV+NS+ +GLTP+EFFFH M GREGL+DTAVKTAETGY+QRR
Sbjct: 813 NRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRR 872
Query: 425 LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFD 484
L+K +E ++VHYD TVRN+V +++ YG DGL ++E R V L H+ + +
Sbjct: 873 LVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDGLDPVSME-TRNKPVDLVHQYDNLRAQHP 931
Query: 485 PSNERP-TLRNVSSLRRVVNSKPLLIGC---WKLTSVEKEMNTVLQFYG-LYVNYRHLAL 539
+RP +S + P +KL V +NTV + G L Y
Sbjct: 932 QGKDRPLNAEEMSEALETLLRTPEFAEARDDFKL-DVRNHINTVSKRIGQLQKRYEKCID 990
Query: 540 LC 541
LC
Sbjct: 991 LC 992
Score = 308 (113.5 bits), Expect = 8.7e-53, Sum P(3) = 8.7e-53
Identities = 77/195 (39%), Positives = 103/195 (52%)
Query: 975 VRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTL 1034
+R AE + +S L G + +Q+IACVGQQ + GKR+P GF R L
Sbjct: 757 IREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRAL 816
Query: 1035 PHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQV 1094
PHF + P +RGFV+NS+ +GLTP+EFFFH M GREGL+DTAVKTAET + L +
Sbjct: 817 PHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKC 876
Query: 1095 TANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDP----TRISPWLLRIELDRKRMT--- 1147
+ ++YD +N V E V+ Y DP TR P L + D R
Sbjct: 877 LEDLVVHYDGTVRNAV----NEMVDTIYGGDGLDPVSMETRNKPVDLVHQYDNLRAQHPQ 932
Query: 1148 --DKKLTMEAISEKI 1160
D+ L E +SE +
Sbjct: 933 GKDRPLNAEEMSEAL 947
Score = 284 (105.0 bits), Expect = 1.0e-68, Sum P(2) = 1.0e-68
Identities = 60/140 (42%), Positives = 85/140 (60%)
Query: 1264 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1323
+G L V++ V RT SN+ICEI+Q LGIEA R + E+ V++ +G+ V++RH+
Sbjct: 1221 EGYGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHI 1280
Query: 1324 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1383
LL MTA+G ++ ITRHG+ + SFE+T D L DAA + + D + GVSE I
Sbjct: 1281 MLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERI 1340
Query: 1384 IMGQLPRMGTGCFDLLLDAE 1403
I+G +GTG F LL E
Sbjct: 1341 ILGMPACIGTGIFKLLQQHE 1360
Score = 211 (79.3 bits), Expect = 4.9e-61, Sum P(2) = 4.9e-61
Identities = 45/117 (38%), Positives = 68/117 (58%)
Query: 773 LCKIIFVLSV---RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 829
+C+I L + R + E+ V++ +G+ V++RH+ LL MTA+G ++ ITRHG+ +
Sbjct: 1244 ICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGLAK 1303
Query: 830 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 886
SFE+T D L DAA + + D + GVSE II+G +GTG F LL E
Sbjct: 1304 MRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTGIFKLLQQHE 1360
Score = 161 (61.7 bits), Expect = 9.0e-56, Sum P(2) = 9.0e-56
Identities = 32/88 (36%), Positives = 52/88 (59%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
T + E+ V++ +G+ V++RH+ LL MTA+G ++ ITRHG+ + SFE+T
Sbjct: 1258 TIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKT 1317
Query: 575 VDVLMDAAAHAEADPMRGYIQRRLIKAM 602
D L DAA + + D + G + R+I M
Sbjct: 1318 ADHLFDAAYYGQTDAING-VSERIILGM 1344
Score = 137 (53.3 bits), Expect = 6.8e-35, Sum P(3) = 6.8e-35
Identities = 47/147 (31%), Positives = 73/147 (49%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GY+QRRL+K +E ++VHYD TVRN+V +++ YG DGL ++E R V L H+
Sbjct: 867 GYLQRRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDGLDPVSME-TRNKPVDLVHQ--- 922
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
+D LR + R L + + +SE + ++ + + R F DV +
Sbjct: 923 ----YD-----NLRAQHPQGKDRPL--NAEEMSEALETLLRTPEFAEARDDFKLDVRNHI 971
Query: 712 MGSGDVISELEKEWEK---LCEDREAL 735
I +L+K +EK LC E L
Sbjct: 972 NTVSKRIGQLQKRYEKCIDLCHQIECL 998
Score = 113 (44.8 bits), Expect = 8.7e-53, Sum P(3) = 8.7e-53
Identities = 37/168 (22%), Positives = 73/168 (43%)
Query: 88 KMPQPCILKPKPLWTGKQVFSLII-PGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVE 146
K+P P +LKP+ LWTGKQ+FSL++ P + + R + + + S D+ + +
Sbjct: 581 KLPPPALLKPRRLWTGKQMFSLLMRPNDDSQVRLNMVNKGRNYTRNKDLCS-NDSWIHIR 639
Query: 147 HGSLLMGIXXXXXXXXXXXX-XXHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIG 205
+ L+ G+ ++ + G + + + + +L G S GI
Sbjct: 640 NSELMCGVMDKATMGSGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQNRGFSFGIS 699
Query: 206 DTIADPQTYLEIQMAIKK--AK-EDVIEVIQKAHNMDLEP--TPGHSI 248
D + ++ + AK + IE++ KA + +P TP ++
Sbjct: 700 DVTPSKKLLQHKELLLNNGYAKCNEYIELL-KAGTLQCQPGCTPEETL 746
Score = 54 (24.1 bits), Expect = 1.3e-46, Sum P(3) = 1.3e-46
Identities = 28/99 (28%), Positives = 46/99 (46%)
Query: 682 VISELEKEMV-DHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREIFS 740
V+SE++ D + KQ + DV++ M +G I + ++W+ L + AL F
Sbjct: 265 VLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFL-QLHVAL--YFH 321
Query: 741 SGESNVVLPCNLME---VIFILQRWKLWGNENLRFLCKI 776
S S + P N+ I+QR K G + RF C +
Sbjct: 322 SEISGI--PINMAPKKTTRGIVQRLK--GKQG-RFRCNL 355
>UNIPROTKB|F1NIK7 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045087
"innate immune response" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
IPI:IPI00580235 EMBL:AADN02027942 EMBL:AADN02027940
EMBL:AADN02027941 Ensembl:ENSGALT00000007929 Uniprot:F1NIK7
Length = 1390
Score = 510 (184.6 bits), Expect = 1.7e-66, Sum P(2) = 1.7e-66
Identities = 115/250 (46%), Positives = 152/250 (60%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAK-EDVIEVIQKAHNMDLEPTPGNTLRQTFENQVN 303
G SIGIGD + Q L+ + + A + E I+ + L+ PG T +T E +
Sbjct: 695 GFSIGIGD-VTPGQGLLKAKYELLHAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALIL 753
Query: 304 RILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGF 363
+ L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ + G R+P GF
Sbjct: 754 KELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGF 813
Query: 364 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 423
R+LPHF K P ++GFV NS+ +GLTP+EFFFH M GREGL+DTAVKTAETGY+QR
Sbjct: 814 ENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQR 873
Query: 424 RLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYR- 482
RL+K++E + YD TVR+S G +IQ YG DGL A+E + D L K+ D R
Sbjct: 874 RLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGK--DE-PLEFKRVLDNIRA 930
Query: 483 FDPSNERPTL 492
P P L
Sbjct: 931 VYPCRSEPAL 940
Score = 269 (99.8 bits), Expect = 1.5e-47, Sum P(3) = 1.5e-47
Identities = 49/76 (64%), Positives = 60/76 (78%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+IACVGQQ + G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M
Sbjct: 793 SQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTM 852
Query: 1069 GGREGLIDTAVKTAET 1084
GREGL+DTAVKTAET
Sbjct: 853 AGREGLVDTAVKTAET 868
Score = 266 (98.7 bits), Expect = 1.7e-66, Sum P(2) = 1.7e-66
Identities = 74/194 (38%), Positives = 109/194 (56%)
Query: 1216 NMLSDM--TLQGI-EAIGKVYMH-LPQTDSKKRIIITE-SGEFKAIADWLLETDGTSLMK 1270
N S M LQ + E + KV + +P+ S+ I I E SG+ K + L +G +L
Sbjct: 1180 NSKSSMYYVLQSLKEELPKVVVQGIPEV-SRAVIHIDEQSGKEK----YKLLVEGDNLRA 1234
Query: 1271 VLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVM 1330
V++ V +T SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+M
Sbjct: 1235 VMATHGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLM 1294
Query: 1331 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 1390
T KG ++ ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG
Sbjct: 1295 TYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMN 1354
Query: 1391 MGTGCFDLLLDAEK 1404
+GTG F LL A+K
Sbjct: 1355 IGTGLFKLLHKADK 1368
Score = 202 (76.2 bits), Expect = 9.3e-60, Sum P(2) = 9.3e-60
Identities = 45/113 (39%), Positives = 67/113 (59%)
Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
K + + + R ++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ +
Sbjct: 1256 KTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESV 1315
Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 887
LM SFE+T D L DAA + D + GVSE IIMG +GTG F LL A+K
Sbjct: 1316 LMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADK 1368
Score = 141 (54.7 bits), Expect = 2.5e-53, Sum P(2) = 2.5e-53
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
T++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ + LM SFE+T
Sbjct: 1265 TTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKT 1324
Query: 575 VDVLMDAAAHAEADPMRG 592
D L DAA + D + G
Sbjct: 1325 ADHLFDAAYFGQKDSVCG 1342
Score = 123 (48.4 bits), Expect = 2.4e-32, Sum P(3) = 2.4e-32
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE 636
GY+QRRL+K++E + YD TVR+S G +IQ YG DGL A+E
Sbjct: 869 GYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913
Score = 121 (47.7 bits), Expect = 1.5e-47, Sum P(3) = 1.5e-47
Identities = 41/161 (25%), Positives = 69/161 (42%)
Query: 88 KMPQPCILKPKPLWTGKQVFSLII-PGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVE 146
++P P ILKP LWTGKQVFSLI+ P + + + + G + + D+ V ++
Sbjct: 582 RLPPPAILKPVTLWTGKQVFSLILKPSDDCPVKANLRTKGKQYCGKGEDLCYNDSYVTIQ 641
Query: 147 HGSLLMG-IXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIG 205
+ L+ G + +I + G + + +L G SIGIG
Sbjct: 642 NSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRGFSIGIG 701
Query: 206 DTIADPQTYLEIQMAIKKAK-EDVIEVIQKAHNMDLEPTPG 245
D + Q L+ + + A + E I+ + L+ PG
Sbjct: 702 D-VTPGQGLLKAKYELLHAGYKKCDEYIEALNTGKLQQQPG 741
Score = 49 (22.3 bits), Expect = 6.4e-18, Sum P(3) = 6.4e-18
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 301 QVNRILNDARDKTGGSAKKSLTEYNNLKAMV----VAGSKGSNINISQVIACVG 350
+V+R + +++G K L E +NL+A++ V G+K S+ N +V +G
Sbjct: 1206 EVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTKTSSNNTYEVEKTLG 1259
Score = 42 (19.8 bits), Expect = 4.7e-38, Sum P(4) = 4.7e-38
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 682 VISELEKEM-VDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKL 728
V+S+L+ D + K IF DV+++ SG + ++W+ L
Sbjct: 266 VVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFL 313
Score = 38 (18.4 bits), Expect = 4.7e-38, Sum P(4) = 4.7e-38
Identities = 28/130 (21%), Positives = 50/130 (38%)
Query: 169 HICF-LELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYL-EIQMAIKKAKE 226
HICF ++ E+ R +IQ V N + H + + D + E + +
Sbjct: 17 HICFGMKSPEEM--RQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMGTSEKDRPCETCGK 74
Query: 227 DVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 286
++ + + +DLE P +G + +QM K ++ V +K +D
Sbjct: 75 NLADCLGHYGYIDLE-LPCFHVGYFKAVIGI-----LQMICKTCCRIMLSVEEKKQFLDY 128
Query: 287 EPTPGNTLRQ 296
PG T Q
Sbjct: 129 LKRPGLTYLQ 138
>UNIPROTKB|Q5ZL98 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 HOVERGEN:HBG004339
CTD:11128 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
PANTHER:PTHR19376:SF15 EMBL:AJ719836 IPI:IPI00580235
RefSeq:NP_001006500.1 UniGene:Gga.11367 ProteinModelPortal:Q5ZL98
STRING:Q5ZL98 PRIDE:Q5ZL98 GeneID:423727 KEGG:gga:423727
InParanoid:Q5ZL98 NextBio:20826153 Uniprot:Q5ZL98
Length = 1390
Score = 510 (184.6 bits), Expect = 1.7e-66, Sum P(2) = 1.7e-66
Identities = 115/250 (46%), Positives = 152/250 (60%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAK-EDVIEVIQKAHNMDLEPTPGNTLRQTFENQVN 303
G SIGIGD + Q L+ + + A + E I+ + L+ PG T +T E +
Sbjct: 695 GFSIGIGD-VTPGQGLLKAKYELLHAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALIL 753
Query: 304 RILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGF 363
+ L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ + G R+P GF
Sbjct: 754 KELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGF 813
Query: 364 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 423
R+LPHF K P ++GFV NS+ +GLTP+EFFFH M GREGL+DTAVKTAETGY+QR
Sbjct: 814 ENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQR 873
Query: 424 RLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYR- 482
RL+K++E + YD TVR+S G +IQ YG DGL A+E + D L K+ D R
Sbjct: 874 RLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGK--DE-PLEFKRVLDNIRA 930
Query: 483 FDPSNERPTL 492
P P L
Sbjct: 931 VYPCRSEPAL 940
Score = 269 (99.8 bits), Expect = 6.4e-47, Sum P(3) = 6.4e-47
Identities = 49/76 (64%), Positives = 60/76 (78%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+IACVGQQ + G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M
Sbjct: 793 SQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTM 852
Query: 1069 GGREGLIDTAVKTAET 1084
GREGL+DTAVKTAET
Sbjct: 853 AGREGLVDTAVKTAET 868
Score = 266 (98.7 bits), Expect = 1.7e-66, Sum P(2) = 1.7e-66
Identities = 74/194 (38%), Positives = 109/194 (56%)
Query: 1216 NMLSDM--TLQGI-EAIGKVYMH-LPQTDSKKRIIITE-SGEFKAIADWLLETDGTSLMK 1270
N S M LQ + E + KV + +P+ S+ I I E SG+ K + L +G +L
Sbjct: 1180 NSKSSMYYVLQSLKEELPKVVVQGIPEV-SRAVIHIDEQSGKEK----YKLLVEGDNLRA 1234
Query: 1271 VLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVM 1330
V++ V +T SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+M
Sbjct: 1235 VMATHGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLM 1294
Query: 1331 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 1390
T KG ++ ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG
Sbjct: 1295 TYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMN 1354
Query: 1391 MGTGCFDLLLDAEK 1404
+GTG F LL A+K
Sbjct: 1355 IGTGLFKLLHKADK 1368
Score = 202 (76.2 bits), Expect = 9.3e-60, Sum P(2) = 9.3e-60
Identities = 45/113 (39%), Positives = 67/113 (59%)
Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
K + + + R ++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ +
Sbjct: 1256 KTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESV 1315
Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 887
LM SFE+T D L DAA + D + GVSE IIMG +GTG F LL A+K
Sbjct: 1316 LMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADK 1368
Score = 141 (54.7 bits), Expect = 2.5e-53, Sum P(2) = 2.5e-53
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
T++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ + LM SFE+T
Sbjct: 1265 TTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKT 1324
Query: 575 VDVLMDAAAHAEADPMRG 592
D L DAA + D + G
Sbjct: 1325 ADHLFDAAYFGQKDSVCG 1342
Score = 123 (48.4 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE 636
GY+QRRL+K++E + YD TVR+S G +IQ YG DGL A+E
Sbjct: 869 GYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913
Score = 115 (45.5 bits), Expect = 6.4e-47, Sum P(3) = 6.4e-47
Identities = 40/161 (24%), Positives = 68/161 (42%)
Query: 88 KMPQPCILKPKPLWTGKQVFSLII-PGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVE 146
++P P ILKP LWTGKQVFS I+ P + + + + G + + D+ V ++
Sbjct: 582 RLPPPAILKPVTLWTGKQVFSSILKPSDDCPVKANLRTKGKQYCGKGEDLCYNDSYVTIQ 641
Query: 147 HGSLLMG-IXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIG 205
+ L+ G + +I + G + + +L G SIGIG
Sbjct: 642 NSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRGFSIGIG 701
Query: 206 DTIADPQTYLEIQMAIKKAK-EDVIEVIQKAHNMDLEPTPG 245
D + Q L+ + + A + E I+ + L+ PG
Sbjct: 702 D-VTPGQGLLKAKYELLHAGYKKCDEYIEALNTGKLQQQPG 741
Score = 49 (22.3 bits), Expect = 2.6e-17, Sum P(3) = 2.6e-17
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 301 QVNRILNDARDKTGGSAKKSLTEYNNLKAMV----VAGSKGSNINISQVIACVG 350
+V+R + +++G K L E +NL+A++ V G+K S+ N +V +G
Sbjct: 1206 EVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTKTSSNNTYEVEKTLG 1259
Score = 42 (19.8 bits), Expect = 4.7e-38, Sum P(4) = 4.7e-38
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 682 VISELEKEM-VDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKL 728
V+S+L+ D + K IF DV+++ SG + ++W+ L
Sbjct: 266 VVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFL 313
Score = 38 (18.4 bits), Expect = 4.7e-38, Sum P(4) = 4.7e-38
Identities = 28/130 (21%), Positives = 50/130 (38%)
Query: 169 HICF-LELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYL-EIQMAIKKAKE 226
HICF ++ E+ R +IQ V N + H + + D + E + +
Sbjct: 17 HICFGMKSPEEM--RQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMGTSEKDRPCETCGK 74
Query: 227 DVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 286
++ + + +DLE P +G + +QM K ++ V +K +D
Sbjct: 75 NLADCLGHYGYIDLE-LPCFHVGYFKAVIGI-----LQMICKTCCRIMLSVEEKKQFLDY 128
Query: 287 EPTPGNTLRQ 296
PG T Q
Sbjct: 129 LKRPGLTYLQ 138
>UNIPROTKB|O14802 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=NAS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=NAS] [GO:0045087 "innate immune response" evidence=IMP]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IMP] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:CH471083 GO:GO:0045087 GO:GO:0051607 Gene3D:2.40.40.20
InterPro:IPR009010 Reactome:REACT_1788 GO:GO:0005666 GO:GO:0003899
GO:GO:0032728 KO:K03018 GO:GO:0006386 GO:GO:0006385 eggNOG:COG0086
GO:GO:0032549 HOVERGEN:HBG004339 CTD:11128 HOGENOM:HOG000222974
OMA:PRRPLIF OrthoDB:EOG4QVCB4 PANTHER:PTHR19376:SF15 EMBL:AF021351
EMBL:AL512628 EMBL:BC041089 EMBL:AY091459 IPI:IPI00024163
RefSeq:NP_008986.2 UniGene:Hs.436896 ProteinModelPortal:O14802
SMR:O14802 IntAct:O14802 STRING:O14802 PhosphoSite:O14802
PaxDb:O14802 PRIDE:O14802 Ensembl:ENST00000372371 GeneID:11128
KEGG:hsa:11128 UCSC:uc001jzn.3 GeneCards:GC10M079729
HGNC:HGNC:30074 HPA:HPA037926 MIM:607694 MIM:614258
neXtProt:NX_O14802 Orphanet:88637 Orphanet:77295
PharmGKB:PA134900426 InParanoid:O14802 PhylomeDB:O14802
ChiTaRS:POLR3A GenomeRNAi:11128 NextBio:42292 ArrayExpress:O14802
Bgee:O14802 CleanEx:HS_POLR3A Genevestigator:O14802
GermOnline:ENSG00000148606 Uniprot:O14802
Length = 1390
Score = 509 (184.2 bits), Expect = 3.6e-66, Sum P(2) = 3.6e-66
Identities = 107/220 (48%), Positives = 142/220 (64%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAK-EDVIEVIQKAHNMDLEPTPGNTLRQTFENQVN 303
G SIGIGD + Q L+ + + A + E I+ + L+ PG T +T E +
Sbjct: 695 GFSIGIGD-VTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALIL 753
Query: 304 RILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGF 363
+ L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ + G R+P GF
Sbjct: 754 KELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGF 813
Query: 364 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 423
R+LPHF K P ++GFV NS+ +GLTP+EFFFH M GREGL+DTAVKTAETGY+QR
Sbjct: 814 ENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQR 873
Query: 424 RLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE 463
RL+K++E + YD TVR+S G +IQ YG DGL A+E
Sbjct: 874 RLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913
Score = 269 (99.8 bits), Expect = 1.4e-48, Sum P(3) = 1.4e-48
Identities = 49/76 (64%), Positives = 60/76 (78%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+IACVGQQ + G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M
Sbjct: 793 SQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTM 852
Query: 1069 GGREGLIDTAVKTAET 1084
GREGL+DTAVKTAET
Sbjct: 853 AGREGLVDTAVKTAET 868
Score = 264 (98.0 bits), Expect = 3.6e-66, Sum P(2) = 3.6e-66
Identities = 66/196 (33%), Positives = 106/196 (54%)
Query: 1218 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1277
L + +QGI + + +H+ + K++ +K + + G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------YKLLVE------GDNLRAVMATHGV 1241
Query: 1278 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1337
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1338 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1397
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1398 LLLDAEKCKDGIEIPL 1413
LL A++ + + PL
Sbjct: 1362 LLHKADRDPNPPKRPL 1377
Score = 200 (75.5 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 46/122 (37%), Positives = 71/122 (58%)
Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
K + + + R ++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ +
Sbjct: 1256 KTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESV 1315
Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI 894
LM SFE+T D L DAA + D + GVSE IIMG +GTG F LL A++ + +
Sbjct: 1316 LMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADRDPNPPKR 1375
Query: 895 PL 896
PL
Sbjct: 1376 PL 1377
Score = 141 (54.7 bits), Expect = 3.2e-53, Sum P(2) = 3.2e-53
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
T++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ + LM SFE+T
Sbjct: 1265 TTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKT 1324
Query: 575 VDVLMDAAAHAEADPMRG 592
D L DAA + D + G
Sbjct: 1325 ADHLFDAAYFGQKDSVCG 1342
Score = 133 (51.9 bits), Expect = 1.4e-48, Sum P(3) = 1.4e-48
Identities = 41/161 (25%), Positives = 70/161 (43%)
Query: 88 KMPQPCILKPKPLWTGKQVFSLII-PGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVE 146
++P P ILKP LWTGKQ+FS+I+ P + N R + + G + + D+ V ++
Sbjct: 582 RLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQ 641
Query: 147 HGSLLMG-IXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIG 205
+ L+ G + +I + G + + +L G SIGIG
Sbjct: 642 NSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIG 701
Query: 206 DTIADPQTYLEIQMAIKKAK-EDVIEVIQKAHNMDLEPTPG 245
D + Q L+ + + A + E I+ + L+ PG
Sbjct: 702 D-VTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPG 741
Score = 123 (48.4 bits), Expect = 2.3e-33, Sum P(3) = 2.3e-33
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE 636
GY+QRRL+K++E + YD TVR+S G +IQ YG DGL A+E
Sbjct: 869 GYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913
Score = 46 (21.3 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 301 QVNRILNDARDKTGGSAKKSLTEYNNLKA-MVVAGSKGS 338
+V+R + +++G K L E +NL+A M G KG+
Sbjct: 1206 EVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGT 1244
Score = 42 (19.8 bits), Expect = 4.2e-39, Sum P(3) = 4.2e-39
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 682 VISELEKEM-VDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKL 728
V+S+L+ D + K IF DV+++ SG + ++W+ L
Sbjct: 266 VVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFL 313
Score = 39 (18.8 bits), Expect = 8.6e-39, Sum P(3) = 8.6e-39
Identities = 24/110 (21%), Positives = 43/110 (39%)
Query: 240 LEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFE 299
+ P P I D +A P +I +K + I ++K E PG Q
Sbjct: 369 ISPDPNLRI---DEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425
Query: 300 NQVNRILNDA-RDKTGGSAKKS-LTEYNNLKAMVVAGSKGSNINISQVIA 347
Q+ R L R+K K + E + + VV ++ +++ ++A
Sbjct: 426 TQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMA 475
>UNIPROTKB|E2QXD8 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
EMBL:AAEX03002853 Ensembl:ENSCAFT00000024699 Uniprot:E2QXD8
Length = 1376
Score = 509 (184.2 bits), Expect = 4.4e-66, Sum P(2) = 4.4e-66
Identities = 107/220 (48%), Positives = 142/220 (64%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAK-EDVIEVIQKAHNMDLEPTPGNTLRQTFENQVN 303
G SIGIGD + Q L+ + + A + E I+ + L+ PG T +T E +
Sbjct: 698 GFSIGIGD-VTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALIL 756
Query: 304 RILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGF 363
+ L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ + G R+P GF
Sbjct: 757 KELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGF 816
Query: 364 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 423
R+LPHF K P ++GFV NS+ +GLTP+EFFFH M GREGL+DTAVKTAETGY+QR
Sbjct: 817 ENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQR 876
Query: 424 RLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE 463
RL+K++E + YD TVR+S G +IQ YG DGL A+E
Sbjct: 877 RLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 916
Score = 269 (99.8 bits), Expect = 3.5e-48, Sum P(3) = 3.5e-48
Identities = 49/76 (64%), Positives = 60/76 (78%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+IACVGQQ + G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M
Sbjct: 796 SQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTM 855
Query: 1069 GGREGLIDTAVKTAET 1084
GREGL+DTAVKTAET
Sbjct: 856 AGREGLVDTAVKTAET 871
Score = 263 (97.6 bits), Expect = 4.4e-66, Sum P(2) = 4.4e-66
Identities = 64/187 (34%), Positives = 102/187 (54%)
Query: 1218 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1277
L + +QGI + + +H+ + K++ +K + + G +L V++ V
Sbjct: 1182 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------YKLLVE------GDNLRAVMATHGV 1227
Query: 1278 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1337
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1228 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1287
Query: 1338 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1397
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1288 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1347
Query: 1398 LLLDAEK 1404
LL A++
Sbjct: 1348 LLHKADR 1354
Score = 199 (75.1 bits), Expect = 2.4e-59, Sum P(2) = 2.4e-59
Identities = 44/113 (38%), Positives = 67/113 (59%)
Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
K + + + R ++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ +
Sbjct: 1242 KTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESV 1301
Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 887
LM SFE+T D L DAA + D + GVSE IIMG +GTG F LL A++
Sbjct: 1302 LMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADR 1354
Score = 141 (54.7 bits), Expect = 5.8e-52, Sum P(3) = 5.8e-52
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
T++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ + LM SFE+T
Sbjct: 1251 TTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKT 1310
Query: 575 VDVLMDAAAHAEADPMRG 592
D L DAA + D + G
Sbjct: 1311 ADHLFDAAYFGQKDSVCG 1328
Score = 130 (50.8 bits), Expect = 3.5e-48, Sum P(3) = 3.5e-48
Identities = 41/160 (25%), Positives = 69/160 (43%)
Query: 89 MPQPCILKPKPLWTGKQVFSLII-PGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEH 147
+P P ILKP LWTGKQ+FS+I+ P + N R + + G + + D+ V +++
Sbjct: 586 LPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCVNDSYVTIQN 645
Query: 148 GSLLMG-IXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGD 206
L+ G + +I + G + + +L G SIGIGD
Sbjct: 646 SELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGD 705
Query: 207 TIADPQTYLEIQMAIKKAK-EDVIEVIQKAHNMDLEPTPG 245
+ Q L+ + + A + E I+ + L+ PG
Sbjct: 706 -VTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPG 744
Score = 123 (48.4 bits), Expect = 5.7e-33, Sum P(3) = 5.7e-33
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE 636
GY+QRRL+K++E + YD TVR+S G +IQ YG DGL A+E
Sbjct: 872 GYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 916
Score = 46 (21.3 bits), Expect = 2.2e-11, Sum P(4) = 2.2e-11
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 301 QVNRILNDARDKTGGSAKKSLTEYNNLKA-MVVAGSKGS 338
+V+R + +++G K L E +NL+A M G KG+
Sbjct: 1192 EVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGT 1230
Score = 42 (19.8 bits), Expect = 5.1e-39, Sum P(3) = 5.1e-39
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 682 VISELEKEM-VDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKL 728
V+S+L+ D + K IF DV+++ SG + ++W+ L
Sbjct: 266 VVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFL 313
Score = 40 (19.1 bits), Expect = 5.8e-52, Sum P(3) = 5.8e-52
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 1265 GTSLMKVLSERDVDP 1279
GT L K+L + D DP
Sbjct: 1342 GTGLFKLLHKADRDP 1356
Score = 39 (18.8 bits), Expect = 1.0e-38, Sum P(3) = 1.0e-38
Identities = 24/110 (21%), Positives = 43/110 (39%)
Query: 240 LEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFE 299
+ P P I D +A P +I +K + I ++K E PG Q
Sbjct: 369 ISPDPNLRI---DEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRH 425
Query: 300 NQVNRILNDA-RDKTGGSAKKS-LTEYNNLKAMVVAGSKGSNINISQVIA 347
Q+ R L R+K K + E + + VV ++ +++ ++A
Sbjct: 426 TQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMA 475
>UNIPROTKB|J9P629 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 CTD:11128 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:AAEX03002853 RefSeq:XP_536399.2
Ensembl:ENSCAFT00000047369 GeneID:479256 KEGG:cfa:479256
Uniprot:J9P629
Length = 1390
Score = 509 (184.2 bits), Expect = 4.5e-66, Sum P(2) = 4.5e-66
Identities = 107/220 (48%), Positives = 142/220 (64%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAK-EDVIEVIQKAHNMDLEPTPGNTLRQTFENQVN 303
G SIGIGD + Q L+ + + A + E I+ + L+ PG T +T E +
Sbjct: 695 GFSIGIGD-VTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALIL 753
Query: 304 RILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGF 363
+ L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ + G R+P GF
Sbjct: 754 KELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGF 813
Query: 364 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 423
R+LPHF K P ++GFV NS+ +GLTP+EFFFH M GREGL+DTAVKTAETGY+QR
Sbjct: 814 ENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQR 873
Query: 424 RLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE 463
RL+K++E + YD TVR+S G +IQ YG DGL A+E
Sbjct: 874 RLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913
Score = 269 (99.8 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 49/76 (64%), Positives = 60/76 (78%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+IACVGQQ + G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M
Sbjct: 793 SQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTM 852
Query: 1069 GGREGLIDTAVKTAET 1084
GREGL+DTAVKTAET
Sbjct: 853 AGREGLVDTAVKTAET 868
Score = 263 (97.6 bits), Expect = 4.5e-66, Sum P(2) = 4.5e-66
Identities = 64/187 (34%), Positives = 102/187 (54%)
Query: 1218 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1277
L + +QGI + + +H+ + K++ +K + + G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------YKLLVE------GDNLRAVMATHGV 1241
Query: 1278 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1337
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1338 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1397
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1398 LLLDAEK 1404
LL A++
Sbjct: 1362 LLHKADR 1368
Score = 199 (75.1 bits), Expect = 2.5e-59, Sum P(2) = 2.5e-59
Identities = 44/113 (38%), Positives = 67/113 (59%)
Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
K + + + R ++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ +
Sbjct: 1256 KTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESV 1315
Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 887
LM SFE+T D L DAA + D + GVSE IIMG +GTG F LL A++
Sbjct: 1316 LMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADR 1368
Score = 141 (54.7 bits), Expect = 6.2e-52, Sum P(3) = 6.2e-52
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
T++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ + LM SFE+T
Sbjct: 1265 TTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKT 1324
Query: 575 VDVLMDAAAHAEADPMRG 592
D L DAA + D + G
Sbjct: 1325 ADHLFDAAYFGQKDSVCG 1342
Score = 130 (50.8 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 41/160 (25%), Positives = 69/160 (43%)
Query: 89 MPQPCILKPKPLWTGKQVFSLII-PGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEH 147
+P P ILKP LWTGKQ+FS+I+ P + N R + + G + + D+ V +++
Sbjct: 583 LPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCVNDSYVTIQN 642
Query: 148 GSLLMG-IXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGD 206
L+ G + +I + G + + +L G SIGIGD
Sbjct: 643 SELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGD 702
Query: 207 TIADPQTYLEIQMAIKKAK-EDVIEVIQKAHNMDLEPTPG 245
+ Q L+ + + A + E I+ + L+ PG
Sbjct: 703 -VTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPG 741
Score = 123 (48.4 bits), Expect = 5.9e-33, Sum P(3) = 5.9e-33
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE 636
GY+QRRL+K++E + YD TVR+S G +IQ YG DGL A+E
Sbjct: 869 GYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913
Score = 46 (21.3 bits), Expect = 2.3e-11, Sum P(4) = 2.3e-11
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 301 QVNRILNDARDKTGGSAKKSLTEYNNLKA-MVVAGSKGS 338
+V+R + +++G K L E +NL+A M G KG+
Sbjct: 1206 EVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGT 1244
Score = 42 (19.8 bits), Expect = 5.3e-39, Sum P(3) = 5.3e-39
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 682 VISELEKEM-VDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKL 728
V+S+L+ D + K IF DV+++ SG + ++W+ L
Sbjct: 266 VVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFL 313
Score = 40 (19.1 bits), Expect = 6.2e-52, Sum P(3) = 6.2e-52
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 1265 GTSLMKVLSERDVDP 1279
GT L K+L + D DP
Sbjct: 1356 GTGLFKLLHKADRDP 1370
Score = 39 (18.8 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 24/110 (21%), Positives = 43/110 (39%)
Query: 240 LEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFE 299
+ P P I D +A P +I +K + I ++K E PG Q
Sbjct: 369 ISPDPNLRI---DEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRH 425
Query: 300 NQVNRILNDA-RDKTGGSAKKS-LTEYNNLKAMVVAGSKGSNINISQVIA 347
Q+ R L R+K K + E + + VV ++ +++ ++A
Sbjct: 426 TQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMA 475
>UNIPROTKB|A4IF62 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9913 "Bos taurus" [GO:0045087 "innate immune
response" evidence=ISS] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0032728 KO:K03018 eggNOG:COG0086 GO:GO:0032549
GeneTree:ENSGT00700000104490 HOVERGEN:HBG004339 EMBL:BC134422
IPI:IPI00701819 RefSeq:NP_001077219.1 UniGene:Bt.58772
ProteinModelPortal:A4IF62 STRING:A4IF62 PRIDE:A4IF62
Ensembl:ENSBTAT00000017638 GeneID:540308 KEGG:bta:540308 CTD:11128
HOGENOM:HOG000222974 InParanoid:A4IF62 OMA:PRRPLIF
OrthoDB:EOG4QVCB4 NextBio:20878554 ArrayExpress:A4IF62
PANTHER:PTHR19376:SF15 Uniprot:A4IF62
Length = 1390
Score = 509 (184.2 bits), Expect = 7.4e-66, Sum P(2) = 7.4e-66
Identities = 107/220 (48%), Positives = 142/220 (64%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAK-EDVIEVIQKAHNMDLEPTPGNTLRQTFENQVN 303
G SIGIGD + Q L+ + + A + E I+ + L+ PG T +T E +
Sbjct: 695 GFSIGIGD-VTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALIL 753
Query: 304 RILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGF 363
+ L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ + G R+P GF
Sbjct: 754 KELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGF 813
Query: 364 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 423
R+LPHF K P ++GFV NS+ +GLTP+EFFFH M GREGL+DTAVKTAETGY+QR
Sbjct: 814 ENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQR 873
Query: 424 RLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE 463
RL+K++E + YD TVR+S G +IQ YG DGL A+E
Sbjct: 874 RLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913
Score = 269 (99.8 bits), Expect = 4.6e-48, Sum P(3) = 4.6e-48
Identities = 49/76 (64%), Positives = 60/76 (78%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+IACVGQQ + G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M
Sbjct: 793 SQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTM 852
Query: 1069 GGREGLIDTAVKTAET 1084
GREGL+DTAVKTAET
Sbjct: 853 AGREGLVDTAVKTAET 868
Score = 261 (96.9 bits), Expect = 7.4e-66, Sum P(2) = 7.4e-66
Identities = 64/187 (34%), Positives = 101/187 (54%)
Query: 1218 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1277
L + +QGI + + +H+ + K++ +K + + G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------YKLLVE------GDNLRAVMATHGV 1241
Query: 1278 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1337
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1338 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1397
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1398 LLLDAEK 1404
LL A +
Sbjct: 1362 LLHKANR 1368
Score = 197 (74.4 bits), Expect = 4.0e-59, Sum P(2) = 4.0e-59
Identities = 44/113 (38%), Positives = 66/113 (58%)
Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
K + + + R ++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ +
Sbjct: 1256 KTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESV 1315
Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 887
LM SFE+T D L DAA + D + GVSE IIMG +GTG F LL A +
Sbjct: 1316 LMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANR 1368
Score = 141 (54.7 bits), Expect = 3.2e-53, Sum P(2) = 3.2e-53
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
T++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ + LM SFE+T
Sbjct: 1265 TTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKT 1324
Query: 575 VDVLMDAAAHAEADPMRG 592
D L DAA + D + G
Sbjct: 1325 ADHLFDAAYFGQKDSVCG 1342
Score = 131 (51.2 bits), Expect = 4.6e-48, Sum P(3) = 4.6e-48
Identities = 41/161 (25%), Positives = 70/161 (43%)
Query: 88 KMPQPCILKPKPLWTGKQVFSLII-PGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVE 146
++P P ILKP LWTGKQ+FS+I+ P + N R + + G + + D+ V ++
Sbjct: 582 RLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGRGEDLCVNDSYVTIQ 641
Query: 147 HGSLLMG-IXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIG 205
+ L+ G + +I + G + + +L G SIGIG
Sbjct: 642 NSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIG 701
Query: 206 DTIADPQTYLEIQMAIKKAK-EDVIEVIQKAHNMDLEPTPG 245
D + Q L+ + + A + E I+ + L+ PG
Sbjct: 702 D-VTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPG 741
Score = 123 (48.4 bits), Expect = 7.6e-33, Sum P(3) = 7.6e-33
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE 636
GY+QRRL+K++E + YD TVR+S G +IQ YG DGL A+E
Sbjct: 869 GYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913
Score = 46 (21.3 bits), Expect = 4.1e-18, Sum P(3) = 4.1e-18
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 301 QVNRILNDARDKTGGSAKKSLTEYNNLKA-MVVAGSKGS 338
+V+R + +++G K L E +NL+A M G KG+
Sbjct: 1206 EVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGT 1244
Score = 42 (19.8 bits), Expect = 8.6e-39, Sum P(3) = 8.6e-39
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 682 VISELEKEM-VDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKL 728
V+S+L+ D + K IF DV+++ SG + ++W+ L
Sbjct: 266 VVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFL 313
Score = 39 (18.8 bits), Expect = 1.8e-38, Sum P(3) = 1.8e-38
Identities = 24/110 (21%), Positives = 43/110 (39%)
Query: 240 LEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFE 299
+ P P I D +A P +I +K + I ++K E PG Q
Sbjct: 369 ISPDPNLRI---DEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRH 425
Query: 300 NQVNRILNDA-RDKTGGSAK-KSLTEYNNLKAMVVAGSKGSNINISQVIA 347
Q+ R L R+K K + E + + VV ++ +++ ++A
Sbjct: 426 TQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMA 475
>DICTYBASE|DDB_G0277199 [details] [associations]
symbol:rpc1 "RNA polymerase III, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0277199 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000019 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
KO:K03018 eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:XP_642724.1 ProteinModelPortal:Q86AQ5
STRING:Q86AQ5 EnsemblProtists:DDB0216293 GeneID:8620917
KEGG:ddi:DDB_G0277199 ProtClustDB:CLSZ2729139 Uniprot:Q86AQ5
Length = 1450
Score = 511 (184.9 bits), Expect = 2.5e-65, Sum P(3) = 2.5e-65
Identities = 110/244 (45%), Positives = 151/244 (61%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNR 304
G SIGI D + + I+ A + ++ + L+ + G ++ QTFE ++N+
Sbjct: 683 GFSIGIPDIKPAEDLDRKKREIIETAYKKCAVFLKDYESGSLQLSSGCSMEQTFEAKMNQ 742
Query: 305 ILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
L+ RD G L YN+ M + GSKGSNINI+Q+I CVGQQ V G RIP GF
Sbjct: 743 TLSQIRDDCGKLCVNDLPNYNSPLIMGLCGSKGSNINIAQMICCVGQQIVNGTRIPNGFT 802
Query: 365 KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 424
RT PHF P+S+GFV NS+ G+ P+EFFFH MGGREGL+DTAVKTAETGY+QRR
Sbjct: 803 NRTTPHFKHFAKNPKSKGFVSNSFYTGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRR 862
Query: 425 LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL--CGEAVEHQRIDTV-ALSHKKFEDKY 481
L+KA+E + HYD TVR+S+G ++Q YG+DGL G + + +D + A+ K +
Sbjct: 863 LMKALEDLSTHYDYTVRDSIGGIVQFIYGDDGLDPAGMEAKDRPVDFLRAMMSVKSTRQC 922
Query: 482 RFDP 485
R +P
Sbjct: 923 RNEP 926
Score = 278 (102.9 bits), Expect = 4.7e-46, Sum P(4) = 4.7e-46
Identities = 67/157 (42%), Positives = 86/157 (54%)
Query: 954 AGEDQLSKQANENATLLFQCLVRSTL------CTKLVAENY-RLSSEAFEWLVGEIENRF 1006
+G QLS + T F+ + TL C KL + +S L G +
Sbjct: 721 SGSLQLSSGCSMEQT--FEAKMNQTLSQIRDDCGKLCVNDLPNYNSPLIMGLCGSKGSNI 778
Query: 1007 QQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFH 1066
AQ+I CVGQQ V G RIP GF RT PHF P+S+GFV NS+ G+ P+EFFFH
Sbjct: 779 NIAQMICCVGQQIVNGTRIPNGFTNRTTPHFKHFAKNPKSKGFVSNSFYTGMIPTEFFFH 838
Query: 1067 AMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
MGGREGL+DTAVKTAET + L + + + +YD
Sbjct: 839 TMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYD 875
Score = 266 (98.7 bits), Expect = 2.5e-65, Sum P(3) = 2.5e-65
Identities = 61/161 (37%), Positives = 91/161 (56%)
Query: 1244 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1303
R++I++ E + L+E G L V++ + T SN I E LGIE R ++
Sbjct: 1280 RVVISKVDEKQERYQLLVE--GYDLRAVMATPGIKGTHTTSNHIMECENTLGIETARNTI 1337
Query: 1304 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1363
E++ ++ +G+ ++ RH+ LL D+M+ KG ++ ITR GI + LM SFE+T D
Sbjct: 1338 MSEIDMIMTSHGMSIDIRHVMLLADLMSFKGEILGITRFGIAKMKESVLMLASFEKTTDH 1397
Query: 1364 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
L DAA H D + GVSE IIMG + +GTG F LL + K
Sbjct: 1398 LFDAAVHHRQDDIVGVSECIIMGVVIPLGTGLFKLLRKSNK 1438
Score = 215 (80.7 bits), Expect = 5.4e-60, Sum P(3) = 5.4e-60
Identities = 44/107 (41%), Positives = 66/107 (61%)
Query: 781 SVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 840
+ R ++ E++ ++ +G+ ++ RH+ LL D+M+ KG ++ ITR GI + LM SF
Sbjct: 1332 TARNTIMSEIDMIMTSHGMSIDIRHVMLLADLMSFKGEILGITRFGIAKMKESVLMLASF 1391
Query: 841 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 887
E+T D L DAA H D + GVSE IIMG + +GTG F LL + K
Sbjct: 1392 EKTTDHLFDAAVHHRQDDIVGVSECIIMGVVIPLGTGLFKLLRKSNK 1438
Score = 152 (58.6 bits), Expect = 2.1e-53, Sum P(3) = 2.1e-53
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++ E++ ++ +G+ ++ RH+ LL D+M+ KG ++ ITR GI + LM SFE+T
Sbjct: 1336 TIMSEIDMIMTSHGMSIDIRHVMLLADLMSFKGEILGITRFGIAKMKESVLMLASFEKTT 1395
Query: 576 DVLMDAAAHAEADPMRG 592
D L DAA H D + G
Sbjct: 1396 DHLFDAAVHHRQDDIVG 1412
Score = 136 (52.9 bits), Expect = 2.3e-31, Sum P(4) = 2.3e-31
Identities = 30/80 (37%), Positives = 51/80 (63%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL--CGEAVEHQRIDTV-ALSHK 648
GY+QRRL+KA+E + HYD TVR+S+G ++Q YG+DGL G + + +D + A+
Sbjct: 857 GYMQRRLMKALEDLSTHYDYTVRDSIGGIVQFIYGDDGLDPAGMEAKDRPVDFLRAMMSV 916
Query: 649 KFEDKYRFDPSNER-QLRRI 667
K + R +P + ++R++
Sbjct: 917 KSTRQCRNEPEMKPFEIRKL 936
Score = 107 (42.7 bits), Expect = 4.7e-46, Sum P(4) = 4.7e-46
Identities = 43/190 (22%), Positives = 78/190 (41%)
Query: 89 MPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ---WISPGDTKVVV 145
+P P ILKP LWTGKQ+F +++ +V ++H + S Y ++ P D V
Sbjct: 572 LPPPAILKPVELWTGKQIFEVLLRPSV---KSHVLCNFETRSRTYSKNLYMCPKDGYVYF 628
Query: 146 EHGSLLMG-IXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
+ L+ G I HI + + + + +L +G SIGI
Sbjct: 629 RNSELMCGSIDKSIIGGGNKNSLFHILMRDFSPTIAANCMTRLAKLCARFLGDQGFSIGI 688
Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTY-LEI 263
D P L+ + K ++IE K + L+ S+ + + QT+ ++
Sbjct: 689 PDI--KPAEDLD------RKKREIIETAYKKCAVFLKDYESGSLQLSSGCSMEQTFEAKM 740
Query: 264 QMAIKKAKED 273
+ + ++D
Sbjct: 741 NQTLSQIRDD 750
Score = 45 (20.9 bits), Expect = 1.0e-16, Sum P(4) = 1.0e-16
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 302 VNRILNDARDKTGGSAKKSLTEYNNLKA-MVVAGSKGSNINISQVIACVGQQNVEGKR 358
VNR++ D+ + L E +L+A M G KG++ + ++ C +E R
Sbjct: 1278 VNRVVISKVDEKQ-ERYQLLVEGYDLRAVMATPGIKGTHTTSNHIMECENTLGIETAR 1334
Score = 43 (20.2 bits), Expect = 4.9e-42, Sum P(3) = 4.9e-42
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 1688 KVDFVEPKDLVEWKTLLKQMHSDFCLAQIIKCIPTLSRHLGSDCSSNEKVRY 1739
K+ V P ++ E Q + A I+K IPT++R + S ++ RY
Sbjct: 1243 KLRIVPPANIREGSLYYLQFLKNNLPAVIVKGIPTVNRVVISKVDEKQE-RY 1293
Score = 42 (19.8 bits), Expect = 2.5e-65, Sum P(3) = 2.5e-65
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 29 YEESIILGMDPKFARPD 45
Y++ I+ MDP RP+
Sbjct: 226 YQDIEIMNMDPVIGRPE 242
Score = 41 (19.5 bits), Expect = 6.4e-39, Sum P(4) = 6.4e-39
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 468 DTVALSHKKFEDKYRFDPSNERPT 491
D V LSH + ++ FD +PT
Sbjct: 26 DIVRLSHVQIVNRELFDLVKRKPT 49
Score = 39 (18.8 bits), Expect = 5.0e-39, Sum P(4) = 5.0e-39
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 852 AHAEADPMRGVSENIIMGQLPRMG 875
A AEA + GV+ N+I PR G
Sbjct: 507 ARAEATILMGVTNNLIT---PRNG 527
Score = 38 (18.4 bits), Expect = 1.6e-41, Sum P(3) = 1.6e-41
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 613 VRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALS 646
++ SV L D L AV H++ D V +S
Sbjct: 1381 MKESVLMLASFEKTTDHLFDAAVHHRQDDIVGVS 1414
>UNIPROTKB|F1S2E6 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0045087 "innate immune response" evidence=IEA]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:CU407090 RefSeq:XP_001929395.1 Ensembl:ENSSSCT00000011305
GeneID:100156229 KEGG:ssc:100156229 Uniprot:F1S2E6
Length = 1390
Score = 508 (183.9 bits), Expect = 2.5e-65, Sum P(2) = 2.5e-65
Identities = 107/220 (48%), Positives = 141/220 (64%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAK-EDVIEVIQKAHNMDLEPTPGNTLRQTFENQVN 303
G SIGIGD + Q L+ + + A E I+ + L+ PG T +T E +
Sbjct: 695 GFSIGIGD-VTPGQGLLKAKYELLNAGYRKCDEYIEALNTGKLQQQPGCTAEETLEALIL 753
Query: 304 RILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGF 363
+ L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ + G R+P GF
Sbjct: 754 KELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGF 813
Query: 364 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 423
R+LPHF K P ++GFV NS+ +GLTP+EFFFH M GREGL+DTAVKTAETGY+QR
Sbjct: 814 ENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQR 873
Query: 424 RLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE 463
RL+K++E + YD TVR+S G +IQ YG DGL A+E
Sbjct: 874 RLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913
Score = 269 (99.8 bits), Expect = 1.9e-47, Sum P(3) = 1.9e-47
Identities = 49/76 (64%), Positives = 60/76 (78%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+IACVGQQ + G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M
Sbjct: 793 SQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTM 852
Query: 1069 GGREGLIDTAVKTAET 1084
GREGL+DTAVKTAET
Sbjct: 853 AGREGLVDTAVKTAET 868
Score = 257 (95.5 bits), Expect = 2.5e-65, Sum P(2) = 2.5e-65
Identities = 63/187 (33%), Positives = 101/187 (54%)
Query: 1218 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1277
L + +QGI + + +H+ + K++ +K + + G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------YKLLVE------GDNLRAVMATHGV 1241
Query: 1278 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1337
+T SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTQTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1338 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1397
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1398 LLLDAEK 1404
LL A +
Sbjct: 1362 LLHKANR 1368
Score = 197 (74.4 bits), Expect = 5.2e-59, Sum P(2) = 5.2e-59
Identities = 44/113 (38%), Positives = 66/113 (58%)
Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
K + + + R ++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ +
Sbjct: 1256 KTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESV 1315
Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 887
LM SFE+T D L DAA + D + GVSE IIMG +GTG F LL A +
Sbjct: 1316 LMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANR 1368
Score = 141 (54.7 bits), Expect = 4.0e-53, Sum P(2) = 4.0e-53
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
T++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ + LM SFE+T
Sbjct: 1265 TTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKT 1324
Query: 575 VDVLMDAAAHAEADPMRG 592
D L DAA + D + G
Sbjct: 1325 ADHLFDAAYFGQKDSVCG 1342
Score = 129 (50.5 bits), Expect = 1.9e-47, Sum P(3) = 1.9e-47
Identities = 42/161 (26%), Positives = 68/161 (42%)
Query: 88 KMPQPCILKPKPLWTGKQVFSLII-PGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVE 146
++P P ILKP LWTGKQVFS+I+ P N R + + G + + D+ V ++
Sbjct: 582 RLPPPTILKPVTLWTGKQVFSVILRPSYDNPVRANLRTKGKQYCGKGEDLCVNDSYVTIQ 641
Query: 147 HGSLLMG-IXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIG 205
+ L+ G + +I + G + + +L G SIGIG
Sbjct: 642 NSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIG 701
Query: 206 DTIADPQTYLEIQMAIKKAK-EDVIEVIQKAHNMDLEPTPG 245
D + Q L+ + + A E I+ + L+ PG
Sbjct: 702 D-VTPGQGLLKAKYELLNAGYRKCDEYIEALNTGKLQQQPG 741
Score = 123 (48.4 bits), Expect = 3.3e-32, Sum P(3) = 3.3e-32
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE 636
GY+QRRL+K++E + YD TVR+S G +IQ YG DGL A+E
Sbjct: 869 GYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913
Score = 46 (21.3 bits), Expect = 6.6e-18, Sum P(3) = 6.6e-18
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 301 QVNRILNDARDKTGGSAKKSLTEYNNLKA-MVVAGSKGS 338
+V+R + +++G K L E +NL+A M G KG+
Sbjct: 1206 EVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGT 1244
Score = 42 (19.8 bits), Expect = 2.2e-38, Sum P(3) = 2.2e-38
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 682 VISELEKEM-VDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKL 728
V+S+L+ D + K IF DV+++ SG + ++W+ L
Sbjct: 266 VVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFL 313
Score = 38 (18.4 bits), Expect = 5.8e-38, Sum P(3) = 5.8e-38
Identities = 24/110 (21%), Positives = 43/110 (39%)
Query: 240 LEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFE 299
+ P P I D +A P +I +K + I ++K E PG Q
Sbjct: 369 ISPDPNLRI---DEVAVPVHVAKILTFPEKVNKANITFLRKLVRNGPEVHPGANFIQQRH 425
Query: 300 NQVNRILNDA-RDKTGGSAK-KSLTEYNNLKAMVVAGSKGSNINISQVIA 347
Q+ R L R+K K + E + + VV ++ +++ ++A
Sbjct: 426 TQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMA 475
>ZFIN|ZDB-GENE-050208-103 [details] [associations]
symbol:polr3a "polymerase (RNA) III (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
ZFIN:ZDB-GENE-050208-103 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
KO:K03018 GO:GO:0032549 GeneTree:ENSGT00700000104490
PANTHER:PTHR19376:SF15 EMBL:CABZ01084340 EMBL:CABZ01084341
EMBL:CABZ01084342 EMBL:CABZ01084343 EMBL:CABZ01084344
EMBL:CABZ01084345 EMBL:CABZ01084346 IPI:IPI00960980
RefSeq:XP_003199716.1 UniGene:Dr.109694 Ensembl:ENSDART00000105273
GeneID:572258 KEGG:dre:572258 NextBio:20890901 Bgee:E7F5P2
Uniprot:E7F5P2
Length = 1390
Score = 504 (182.5 bits), Expect = 4.1e-65, Sum P(2) = 4.1e-65
Identities = 122/280 (43%), Positives = 163/280 (58%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAK-EDVIEVIQKAHNMDLEPTPGNTLRQTFENQVN 303
G SIGIGD + Q L+ + + A E E I L+ PG T +T E +
Sbjct: 695 GFSIGIGD-VTPGQGLLKAKQELLDAGYEKCDEYIDALKTGRLQQQPGCTAEETLEALIL 753
Query: 304 RILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGF 363
+ L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ + G R+P GF
Sbjct: 754 KELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGF 813
Query: 364 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 423
R+LPHF K P ++GFV +S+ +GLTP+EFFFH M GREGL+DTAVKTAETGY+QR
Sbjct: 814 ENRSLPHFQKHSKLPAAKGFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQR 873
Query: 424 RLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYR- 482
RL+K++E + YD TVR+S G +IQ YG DGL A+E + D L K+ D R
Sbjct: 874 RLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGK--DE-PLEFKRVLDNIRA 930
Query: 483 -FDPSNERPTLRNVSSLRR--VVNSKPLLIGCWKLTSVEK 519
+ + E RN L ++ K L C K T +E+
Sbjct: 931 VYSCTGEPALSRNELLLTSDSIMKRKDFL--CCKDTFLEE 968
Score = 264 (98.0 bits), Expect = 2.8e-46, Sum P(3) = 2.8e-46
Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+IACVGQQ + G R+P GF R+LPHF K P ++GFV +S+ +GLTP+EFFFH M
Sbjct: 793 SQMIACVGQQAISGSRVPDGFENRSLPHFQKHSKLPAAKGFVADSFYSGLTPTEFFFHTM 852
Query: 1069 GGREGLIDTAVKTAET 1084
GREGL+DTAVKTAET
Sbjct: 853 AGREGLVDTAVKTAET 868
Score = 259 (96.2 bits), Expect = 4.1e-65, Sum P(2) = 4.1e-65
Identities = 64/196 (32%), Positives = 105/196 (53%)
Query: 1218 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1277
L + +QGI + + +H+ + K++ FK + + G ++ V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKQK--------FKLLVE------GDNMRSVMATHGV 1241
Query: 1278 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1337
+ +T SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+M+ KG ++
Sbjct: 1242 NGSKTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEIL 1301
Query: 1338 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1397
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1398 LLLDAEKCKDGIEIPL 1413
LL + + D PL
Sbjct: 1362 LLHRSNREADPPRRPL 1377
Score = 196 (74.1 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 45/122 (36%), Positives = 69/122 (56%)
Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
K + + + R ++ E+ + +G+ ++ RH+ LL D+M+ KG ++ ITR G+ +
Sbjct: 1256 KTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESV 1315
Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI 894
LM SFE+T D L DAA + D + GVSE IIMG +GTG F LL + + D
Sbjct: 1316 LMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHRSNREADPPRR 1375
Query: 895 PL 896
PL
Sbjct: 1376 PL 1377
Score = 136 (52.9 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 38/123 (30%), Positives = 62/123 (50%)
Query: 480 KYRFDPSNERPTLRNVSSLRRVVNSKPLLIGCW---KLTSVEKEMNTVL---QF----YG 529
K +F E +R+V + V SK + K +E +T++ Q+ +G
Sbjct: 1220 KQKFKLLVEGDNMRSVMATHGVNGSKTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHG 1279
Query: 530 LYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADP 589
+ ++ RH+ LL D+M+ KG ++ ITR G+ + LM SFE+T D L DAA + D
Sbjct: 1280 MSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDS 1339
Query: 590 MRG 592
+ G
Sbjct: 1340 VCG 1342
Score = 123 (48.4 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE 636
GY+QRRL+K++E + YD TVR+S G +IQ YG DGL A+E
Sbjct: 869 GYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913
Score = 121 (47.7 bits), Expect = 2.8e-46, Sum P(3) = 2.8e-46
Identities = 42/160 (26%), Positives = 65/160 (40%)
Query: 89 MPQPCILKPKPLWTGKQVFSLII-PGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEH 147
+P P ILKP LWTGKQ+FSLI+ P + + G + + D+ VV+ +
Sbjct: 583 LPHPAILKPIRLWTGKQIFSLILKPSKSCPVMANLRTKGKQYCGKGEDLCANDSFVVIHN 642
Query: 148 GSLLMG-IXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGD 206
L+ G + +I + G + + + +L G SIGIGD
Sbjct: 643 SELMCGSMDKGTLGSGSKNNIFYILLRDWGQQEAADAMSRLARLAPVYLSNRGFSIGIGD 702
Query: 207 TIADPQTYLEIQMAIKKAK-EDVIEVIQKAHNMDLEPTPG 245
+ Q L+ + + A E E I L+ PG
Sbjct: 703 -VTPGQGLLKAKQELLDAGYEKCDEYIDALKTGRLQQQPG 741
Score = 48 (22.0 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 102 TGKQVFSLIIPGNVNMTRTHSTH 124
+GKQ F L++ G+ NM +TH
Sbjct: 1218 SGKQKFKLLVEGD-NMRSVMATH 1239
Score = 43 (20.2 bits), Expect = 3.8e-38, Sum P(3) = 3.8e-38
Identities = 24/114 (21%), Positives = 47/114 (41%)
Query: 240 LEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFE 299
+ P P I D +A P +I +K + IE+++K E PG Q
Sbjct: 369 ISPDPNLRI---DEVAVPVHVAKILTYPEKVNKANIELMRKLVRNGPEVHPGANFIQQRH 425
Query: 300 NQVNRILNDA-RDKTGGSAK-KSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ 351
Q+ R L R+K K + E + + +V ++ +++ ++A + +
Sbjct: 426 MQMKRFLKYGNREKMAQELKFGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIAR 479
Score = 40 (19.1 bits), Expect = 7.7e-38, Sum P(3) = 7.7e-38
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 682 VISELEKEM-VDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKL 728
V+S+L+ D + K IF DV+++ +G + ++W+ L
Sbjct: 266 VVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFL 313
Score = 39 (18.8 bits), Expect = 6.5e-23, Sum P(3) = 6.5e-23
Identities = 29/122 (23%), Positives = 55/122 (45%)
Query: 560 RQDTGALMRCSFEETVDVLMDAAAHAEADPMRGYIQRRLIKAMESVMVHYDCTVRNSVG- 618
R TG +++ F D L AA + +P+ +R++ + +V Y CT ++
Sbjct: 891 RSSTGDIIQ--FIYGGDGLDPAAMEGKDEPLEF---KRVLDNIRAV---YSCTGEPALSR 942
Query: 619 -QLI----QLRYGEDGLCGEA--VEHQR--IDTVALSHKKFEDKYRFDPSNERQLRRIFN 669
+L+ + +D LC + +E R I TV+ KK DKY + + + + ++
Sbjct: 943 NELLLTSDSIMKRKDFLCCKDTFLEEIRKFIKTVSEKVKKTRDKYGINDNGTTEPKVLYQ 1002
Query: 670 ED 671
D
Sbjct: 1003 LD 1004
>GENEDB_PFALCIPARUM|PF13_0150 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase 3
largest subunit" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 483 (175.1 bits), Expect = 7.2e-65, Sum P(3) = 7.2e-65
Identities = 105/214 (49%), Positives = 139/214 (64%)
Query: 245 GHSIGIGDTIADPQTYLEIQM-AIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVN 303
G +IGI D + QT E + + K E V I + ++ PG TL +T E +V
Sbjct: 806 GMTIGIDD-VRPSQTLTEKKKDLLLKGYEKVNNEIILYNEKKMQIQPGCTLEETLEIKVK 864
Query: 304 RILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGF 363
IL+D R+ G + + L N M +G+KG+ INI+Q+IACVGQQNV G+RI GF
Sbjct: 865 SILDDLRNDAGKTCNQYLHYLNKPLIMFNSGAKGALINIAQMIACVGQQNVAGQRIQNGF 924
Query: 364 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 423
RTLPHF ESRGFV+NS+ GL+P+EFFFH M GREGL+DTAVKTAETGY+QR
Sbjct: 925 INRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEFFFHTMSGREGLVDTAVKTAETGYMQR 984
Query: 424 RLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
RL+KA+E + +HYD +VR+ Q++Q YG+D L
Sbjct: 985 RLMKALEDLSIHYDYSVRSCDKQIVQFIYGDDAL 1018
Score = 282 (104.3 bits), Expect = 2.2e-43, Sum P(3) = 2.2e-43
Identities = 62/124 (50%), Positives = 80/124 (64%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
AQ+IACVGQQNV G+RI GF RTLPHF ESRGFV+NS+ GL+P+EFFFH M
Sbjct: 904 AQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEFFFHTM 963
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
GREGL+DTAVKTAET + L + + +I+YD ++ D++ V Y +
Sbjct: 964 SGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVRSC----DKQIVQFIYGDDALN 1019
Query: 1129 PTRI 1132
P+ I
Sbjct: 1020 PSYI 1023
Score = 248 (92.4 bits), Expect = 7.2e-65, Sum P(3) = 7.2e-65
Identities = 81/254 (31%), Positives = 126/254 (49%)
Query: 1159 KINAG-FGDDLNCIFND--DNAEKLV-LRIRIMNSDDSKMQDEEDAVD--KMEDDMF-LR 1211
KIN F DD+N N+ +N KL + I+ KM+++ + K E ++ L
Sbjct: 2082 KINDTIFNDDINSDRNNLKENGSKLENVGEHIIERLSYKMKEKNVKKEHIKKEPNLINLD 2141
Query: 1212 CIEANMLS--DMTLQGI--EAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTS 1267
I + L+ ++ + I E I HL K+ I + + K + L+E G S
Sbjct: 2142 TINLDTLNFDEINVHNINNEKIEFYDEHLNICQGNKKHIQKKKKK-KTVYSILVE--GNS 2198
Query: 1268 LMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLC 1327
L VL VD SN + +FQVLGIEA R ++ E+ ++ Y + ++ RH+ LL
Sbjct: 2199 LNYVLGLEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSIDIDIRHIMLLA 2258
Query: 1328 DVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQ 1387
D+M G ++ I R GI + LM SFEET + L ++ D + +SE+II+G+
Sbjct: 2259 DIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDEINNISESIIVGK 2318
Query: 1388 LPRMGTGCFDLLLD 1401
+GTG F LL D
Sbjct: 2319 NIPIGTGAFQLLYD 2332
Score = 170 (64.9 bits), Expect = 1.0e-56, Sum P(3) = 1.0e-56
Identities = 35/110 (31%), Positives = 62/110 (56%)
Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
+++ + + R ++ E+ ++ Y + ++ RH+ LL D+M G ++ I R GI +
Sbjct: 2223 QVLGIEAARITIINEIKKCVEAYSIDIDIRHIMLLADIMAFTGDILGINRFGIQKARQST 2282
Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
LM SFEET + L ++ D + +SE+II+G+ +GTG F LL D
Sbjct: 2283 LMLASFEETNEHLFVSSFFKNVDEINNISESIIVGKNIPIGTGAFQLLYD 2332
Score = 114 (45.2 bits), Expect = 7.2e-26, Sum P(3) = 7.2e-26
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QRRL+KA+E + +HYD +VR+ Q++Q YG+D L
Sbjct: 980 GYMQRRLMKALEDLSIHYDYSVRSCDKQIVQFIYGDDAL 1018
Score = 108 (43.1 bits), Expect = 3.1e-50, Sum P(3) = 3.1e-50
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 501 VVNSKPLL-IGCWKLTSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 559
V+N +L I ++T + E+ ++ Y + ++ RH+ LL D+M G ++ I R GI
Sbjct: 2218 VINVFQVLGIEAARITIIN-EIKKCVEAYSIDIDIRHIMLLADIMAFTGDILGINRFGIQ 2276
Query: 560 RQDTGALMRCSFEETVDVLMDAAAHAEAD 588
+ LM SFEET + L ++ D
Sbjct: 2277 KARQSTLMLASFEETNEHLFVSSFFKNVD 2305
Score = 94 (38.1 bits), Expect = 7.2e-65, Sum P(3) = 7.2e-65
Identities = 36/154 (23%), Positives = 63/154 (40%)
Query: 88 KMPQPCILKPKPLWTGKQVFSLII-PGNVNMTRTHSTHPDDEDS---GPYQWISPGDTKV 143
++P P ILKPK LWTGKQ+ S++I P T + + E S G + + D+ V
Sbjct: 691 ELPIPAILKPKELWTGKQLISVLIKPNKKENTIINFEIQEREYSNKFGDLKHLCLNDSYV 750
Query: 144 VVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIG 203
L+ G + + + + + + + +G +IG
Sbjct: 751 CFYKSELICGSLGKKVLGSSKYGLFYYLIHHNSSHIALKIMNRLSKLTSRYFSNKGMTIG 810
Query: 204 IGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHN 237
I D + QT E K K+ +++ +K +N
Sbjct: 811 IDD-VRPSQTLTE------KKKDLLLKGYEKVNN 837
Score = 41 (19.5 bits), Expect = 7.7e-42, Sum P(4) = 7.7e-42
Identities = 23/109 (21%), Positives = 47/109 (43%)
Query: 1632 DDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEETDRSFVKVDF 1691
DD N +DDN + +NSD + +++ ++ + + + R + VK +
Sbjct: 2071 DDNNNNNDDDNKINDTIFNDDINSDRNNLKENGSKLENVGEHIIERLSYKMKEKNVKKEH 2130
Query: 1692 VEPK-DLVEWKTL-LKQMHSDFCLAQII--KCIPTLSRHLGSDCSSNEK 1736
++ + +L+ T+ L ++ D I + I HL C N+K
Sbjct: 2131 IKKEPNLINLDTINLDTLNFDEINVHNINNEKIEFYDEHLNI-CQGNKK 2178
Score = 40 (19.1 bits), Expect = 3.9e-43, Sum P(3) = 3.9e-43
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 1604 DDLNTPLSPTDK--KLTMEAISEKINAGF---GDDLNCIFNDDNAEKLVLRIRIMNSDD 1657
D+ N L K K T+ I I + G L+ FN++ +KL L I N D
Sbjct: 1854 DNYNFALMMKSKLEKTTIRDICMYIKEDYTSRGVFLSVKFNEELIQKLFLNINAYNIKD 1912
Score = 40 (19.1 bits), Expect = 3.0e-18, Sum P(3) = 3.0e-18
Identities = 24/115 (20%), Positives = 50/115 (43%)
Query: 216 EIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQ--TYLEIQMAIKKAKED 273
+I+ I K KED IEV + + +++ G + + + + E + AI+ KE+
Sbjct: 1969 DIKRCIIK-KED-IEVTDNEDEICDDMDEYYNVSQGTELYERKCNSKEENKNAIRVKKEE 2026
Query: 274 VIEVIQKAHNMDL--EPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNN 326
+ + ++K N+ E N L+ + +N N+ D + + +N
Sbjct: 2027 IDDNLEKEENIIYVSEKDSVNQLKSEKKKDINDDNNNNDDNNNNDDNNNNNDDDN 2081
Score = 38 (18.4 bits), Expect = 7.7e-42, Sum P(4) = 7.7e-42
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDD 1191
L+ FN++ +KL L I N D
Sbjct: 1889 LSVKFNEELIQKLFLNINAYNIKD 1912
>UNIPROTKB|Q8IE49 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed
RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 483 (175.1 bits), Expect = 7.2e-65, Sum P(3) = 7.2e-65
Identities = 105/214 (49%), Positives = 139/214 (64%)
Query: 245 GHSIGIGDTIADPQTYLEIQM-AIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVN 303
G +IGI D + QT E + + K E V I + ++ PG TL +T E +V
Sbjct: 806 GMTIGIDD-VRPSQTLTEKKKDLLLKGYEKVNNEIILYNEKKMQIQPGCTLEETLEIKVK 864
Query: 304 RILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGF 363
IL+D R+ G + + L N M +G+KG+ INI+Q+IACVGQQNV G+RI GF
Sbjct: 865 SILDDLRNDAGKTCNQYLHYLNKPLIMFNSGAKGALINIAQMIACVGQQNVAGQRIQNGF 924
Query: 364 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 423
RTLPHF ESRGFV+NS+ GL+P+EFFFH M GREGL+DTAVKTAETGY+QR
Sbjct: 925 INRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEFFFHTMSGREGLVDTAVKTAETGYMQR 984
Query: 424 RLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
RL+KA+E + +HYD +VR+ Q++Q YG+D L
Sbjct: 985 RLMKALEDLSIHYDYSVRSCDKQIVQFIYGDDAL 1018
Score = 282 (104.3 bits), Expect = 2.2e-43, Sum P(3) = 2.2e-43
Identities = 62/124 (50%), Positives = 80/124 (64%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
AQ+IACVGQQNV G+RI GF RTLPHF ESRGFV+NS+ GL+P+EFFFH M
Sbjct: 904 AQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEFFFHTM 963
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
GREGL+DTAVKTAET + L + + +I+YD ++ D++ V Y +
Sbjct: 964 SGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVRSC----DKQIVQFIYGDDALN 1019
Query: 1129 PTRI 1132
P+ I
Sbjct: 1020 PSYI 1023
Score = 248 (92.4 bits), Expect = 7.2e-65, Sum P(3) = 7.2e-65
Identities = 81/254 (31%), Positives = 126/254 (49%)
Query: 1159 KINAG-FGDDLNCIFND--DNAEKLV-LRIRIMNSDDSKMQDEEDAVD--KMEDDMF-LR 1211
KIN F DD+N N+ +N KL + I+ KM+++ + K E ++ L
Sbjct: 2082 KINDTIFNDDINSDRNNLKENGSKLENVGEHIIERLSYKMKEKNVKKEHIKKEPNLINLD 2141
Query: 1212 CIEANMLS--DMTLQGI--EAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTS 1267
I + L+ ++ + I E I HL K+ I + + K + L+E G S
Sbjct: 2142 TINLDTLNFDEINVHNINNEKIEFYDEHLNICQGNKKHIQKKKKK-KTVYSILVE--GNS 2198
Query: 1268 LMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLC 1327
L VL VD SN + +FQVLGIEA R ++ E+ ++ Y + ++ RH+ LL
Sbjct: 2199 LNYVLGLEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSIDIDIRHIMLLA 2258
Query: 1328 DVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQ 1387
D+M G ++ I R GI + LM SFEET + L ++ D + +SE+II+G+
Sbjct: 2259 DIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDEINNISESIIVGK 2318
Query: 1388 LPRMGTGCFDLLLD 1401
+GTG F LL D
Sbjct: 2319 NIPIGTGAFQLLYD 2332
Score = 170 (64.9 bits), Expect = 1.0e-56, Sum P(3) = 1.0e-56
Identities = 35/110 (31%), Positives = 62/110 (56%)
Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
+++ + + R ++ E+ ++ Y + ++ RH+ LL D+M G ++ I R GI +
Sbjct: 2223 QVLGIEAARITIINEIKKCVEAYSIDIDIRHIMLLADIMAFTGDILGINRFGIQKARQST 2282
Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 884
LM SFEET + L ++ D + +SE+II+G+ +GTG F LL D
Sbjct: 2283 LMLASFEETNEHLFVSSFFKNVDEINNISESIIVGKNIPIGTGAFQLLYD 2332
Score = 114 (45.2 bits), Expect = 7.2e-26, Sum P(3) = 7.2e-26
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QRRL+KA+E + +HYD +VR+ Q++Q YG+D L
Sbjct: 980 GYMQRRLMKALEDLSIHYDYSVRSCDKQIVQFIYGDDAL 1018
Score = 108 (43.1 bits), Expect = 3.1e-50, Sum P(3) = 3.1e-50
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 501 VVNSKPLL-IGCWKLTSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 559
V+N +L I ++T + E+ ++ Y + ++ RH+ LL D+M G ++ I R GI
Sbjct: 2218 VINVFQVLGIEAARITIIN-EIKKCVEAYSIDIDIRHIMLLADIMAFTGDILGINRFGIQ 2276
Query: 560 RQDTGALMRCSFEETVDVLMDAAAHAEAD 588
+ LM SFEET + L ++ D
Sbjct: 2277 KARQSTLMLASFEETNEHLFVSSFFKNVD 2305
Score = 94 (38.1 bits), Expect = 7.2e-65, Sum P(3) = 7.2e-65
Identities = 36/154 (23%), Positives = 63/154 (40%)
Query: 88 KMPQPCILKPKPLWTGKQVFSLII-PGNVNMTRTHSTHPDDEDS---GPYQWISPGDTKV 143
++P P ILKPK LWTGKQ+ S++I P T + + E S G + + D+ V
Sbjct: 691 ELPIPAILKPKELWTGKQLISVLIKPNKKENTIINFEIQEREYSNKFGDLKHLCLNDSYV 750
Query: 144 VVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIG 203
L+ G + + + + + + + +G +IG
Sbjct: 751 CFYKSELICGSLGKKVLGSSKYGLFYYLIHHNSSHIALKIMNRLSKLTSRYFSNKGMTIG 810
Query: 204 IGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHN 237
I D + QT E K K+ +++ +K +N
Sbjct: 811 IDD-VRPSQTLTE------KKKDLLLKGYEKVNN 837
Score = 41 (19.5 bits), Expect = 7.7e-42, Sum P(4) = 7.7e-42
Identities = 23/109 (21%), Positives = 47/109 (43%)
Query: 1632 DDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEETDRSFVKVDF 1691
DD N +DDN + +NSD + +++ ++ + + + R + VK +
Sbjct: 2071 DDNNNNNDDDNKINDTIFNDDINSDRNNLKENGSKLENVGEHIIERLSYKMKEKNVKKEH 2130
Query: 1692 VEPK-DLVEWKTL-LKQMHSDFCLAQII--KCIPTLSRHLGSDCSSNEK 1736
++ + +L+ T+ L ++ D I + I HL C N+K
Sbjct: 2131 IKKEPNLINLDTINLDTLNFDEINVHNINNEKIEFYDEHLNI-CQGNKK 2178
Score = 40 (19.1 bits), Expect = 3.9e-43, Sum P(3) = 3.9e-43
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 1604 DDLNTPLSPTDK--KLTMEAISEKINAGF---GDDLNCIFNDDNAEKLVLRIRIMNSDD 1657
D+ N L K K T+ I I + G L+ FN++ +KL L I N D
Sbjct: 1854 DNYNFALMMKSKLEKTTIRDICMYIKEDYTSRGVFLSVKFNEELIQKLFLNINAYNIKD 1912
Score = 40 (19.1 bits), Expect = 3.0e-18, Sum P(3) = 3.0e-18
Identities = 24/115 (20%), Positives = 50/115 (43%)
Query: 216 EIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQ--TYLEIQMAIKKAKED 273
+I+ I K KED IEV + + +++ G + + + + E + AI+ KE+
Sbjct: 1969 DIKRCIIK-KED-IEVTDNEDEICDDMDEYYNVSQGTELYERKCNSKEENKNAIRVKKEE 2026
Query: 274 VIEVIQKAHNMDL--EPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNN 326
+ + ++K N+ E N L+ + +N N+ D + + +N
Sbjct: 2027 IDDNLEKEENIIYVSEKDSVNQLKSEKKKDINDDNNNNDDNNNNDDNNNNNDDDN 2081
Score = 38 (18.4 bits), Expect = 7.7e-42, Sum P(4) = 7.7e-42
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 1168 LNCIFNDDNAEKLVLRIRIMNSDD 1191
L+ FN++ +KL L I N D
Sbjct: 1889 LSVKFNEELIQKLFLNINAYNIKD 1912
>CGD|CAL0002215 [details] [associations]
symbol:orf19.3103 species:5476 "Candida albicans" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 CGD:CAL0002215 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AACQ01000086 KO:K03018 eggNOG:COG0086
GO:GO:0032549 PANTHER:PTHR19376:SF15 RefSeq:XP_715412.1
ProteinModelPortal:Q5A0Z3 STRING:Q5A0Z3 GeneID:3642908
KEGG:cal:CaO19.3103 Uniprot:Q5A0Z3
Length = 1448
Score = 478 (173.3 bits), Expect = 7.3e-63, Sum P(2) = 7.3e-63
Identities = 95/213 (44%), Positives = 134/213 (62%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNR 304
G SIGI D + + ++ +++A ++I + LE PG QT E ++
Sbjct: 704 GFSIGINDVTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGG 763
Query: 305 ILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
+L+ R++ G + L N M GSKGS +N+SQ++A VGQQ + G R+P GF+
Sbjct: 764 LLSKVREEVGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQ 823
Query: 365 KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 424
R+LPHF K+ P+S+GFV NS+ +GLTP EF FHA+ GREGL+DTAVKTAETGY+ RR
Sbjct: 824 DRSLPHFTKNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRR 883
Query: 425 LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
L+K++E + YD TVRNS ++Q YG DGL
Sbjct: 884 LMKSLEDLSSQYDNTVRNSSNGIVQFTYGGDGL 916
Score = 269 (99.8 bits), Expect = 5.4e-48, Sum P(3) = 5.4e-48
Identities = 57/121 (47%), Positives = 75/121 (61%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q++A VGQQ + G R+P GF+ R+LPHF K+ P+S+GFV NS+ +GLTP EF FHA+
Sbjct: 802 SQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLTPPEFLFHAI 861
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
GREGL+DTAVKTAET + L + + + YD NTV V Y D
Sbjct: 862 SGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQYD----NTVRNSSNGIVQFTYGGDGLD 917
Query: 1129 P 1129
P
Sbjct: 918 P 918
Score = 265 (98.3 bits), Expect = 7.3e-63, Sum P(2) = 7.3e-63
Identities = 58/146 (39%), Positives = 88/146 (60%)
Query: 1261 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1320
L +G L V++ + +T +N + E+ Q+LGIEA R S+ KE++ + +G+ V+
Sbjct: 1283 LLVEGYGLKDVMNTEGIVGTKTTTNHVLEVNQILGIEAARGSIIKEIDYTMSNHGMSVDP 1342
Query: 1321 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1380
RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DAA + D + GVS
Sbjct: 1343 RHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKNDKIEGVS 1402
Query: 1381 ENIIMGQLPRMGTGCFDLLLDAEKCK 1406
E II+GQ +GTG F L+ + C+
Sbjct: 1403 ECIILGQTMSIGTGSFKLV-KSSNCE 1427
Score = 209 (78.6 bits), Expect = 5.7e-57, Sum P(2) = 5.7e-57
Identities = 46/115 (40%), Positives = 71/115 (61%)
Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
+I+ + + R S+ KE++ + +G+ V+ RH+ LL DVMT KG ++ ITR G+++
Sbjct: 1314 QILGIEAARGSIIKEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSV 1373
Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 889
L SFE+T D L DAA + D + GVSE II+GQ +GTG F L+ + C+
Sbjct: 1374 LQLASFEKTTDHLFDAAFFMKNDKIEGVSECIILGQTMSIGTGSFKLV-KSSNCE 1427
Score = 146 (56.5 bits), Expect = 2.4e-50, Sum P(2) = 2.4e-50
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
S+ KE++ + +G+ V+ RH+ LL DVMT KG ++ ITR G+++ L SFE+T
Sbjct: 1324 SIIKEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTT 1383
Query: 576 DVLMDAAAHAEADPMRG 592
D L DAA + D + G
Sbjct: 1384 DHLFDAAFFMKNDKIEG 1400
Score = 127 (49.8 bits), Expect = 5.4e-48, Sum P(3) = 5.4e-48
Identities = 44/165 (26%), Positives = 70/165 (42%)
Query: 89 MPQPCILKPKPLWTGKQVFSLIIPGN------VNMTRTHST-HPDDEDSGPYQWISPGDT 141
+P P I KP LWTGKQVFSL+I N +N+ + T HP + P + +SP D
Sbjct: 588 IPPPTIFKPVMLWTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPKKGL-PNE-MSPNDG 645
Query: 142 KVVVEHGSLLMGIXXXXXXXXXXXXXXHICFL-ELGHEVCGRFYGNIQTVVNNWLLLEGH 200
VV+ +L G+ L + G + + + +L G
Sbjct: 646 FVVIRGSKILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGF 705
Query: 201 SIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPG 245
SIGI D + + ++ +++A ++I + LE PG
Sbjct: 706 SIGINDVTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPG 750
Score = 106 (42.4 bits), Expect = 5.0e-31, Sum P(3) = 5.0e-31
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+ RRL+K++E + YD TVRNS ++Q YG DGL
Sbjct: 878 GYMSRRLMKSLEDLSSQYDNTVRNSSNGIVQFTYGGDGL 916
Score = 40 (19.1 bits), Expect = 6.3e-39, Sum P(3) = 6.3e-39
Identities = 24/87 (27%), Positives = 42/87 (48%)
Query: 303 NRILN-DARDKTGGSAKKSL-TEYN-NLKAMVVAGSKGSNINISQVIACVGQQNVEGKRI 359
N ++N DA++KT KK L E + N +V+ GSK +++ + ++ G
Sbjct: 617 NVVINLDAKNKTFHPPKKGLPNEMSPNDGFVVIRGSK--------ILSGLMDKSTLGD-- 666
Query: 360 PFGFRKRTLPHFIKDDYGPESRGFVEN 386
G +K ++ + I DYGP+ N
Sbjct: 667 --G-KKHSVFYTILRDYGPQEAAAAMN 690
Score = 40 (19.1 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 16/78 (20%), Positives = 33/78 (42%)
Query: 196 LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIA 255
LLE + I D D YL I++ ++ + +E+ + + + P I D
Sbjct: 1157 LLEDVAFYIEDVYKDNLAYLSIKIDLETIDKLQLELNLENIAVAIANAPKLKIAQSDVSV 1216
Query: 256 DPQTYLEIQMAIKKAKED 273
+ + + + IK+ K +
Sbjct: 1217 TGKDRINVLVNIKETKTE 1234
>SGD|S000005642 [details] [associations]
symbol:RPO31 "RNA polymerase III largest subunit C160"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=IDA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 SGD:S000005642
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:X90518
EMBL:X94335 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005666
GO:GO:0003899 Reactome:REACT_83470 KO:K03018 OrthoDB:EOG4X3M8C
eggNOG:COG0086 GO:GO:0032549 Reactome:REACT_87991 GO:GO:0042797
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222974
PANTHER:PTHR19376:SF15 EMBL:X03129 EMBL:Z75024 PIR:A00694
RefSeq:NP_014759.1 ProteinModelPortal:P04051 SMR:P04051
DIP:DIP-612N IntAct:P04051 MINT:MINT-557787 STRING:P04051
PaxDb:P04051 PeptideAtlas:P04051 EnsemblFungi:YOR116C GeneID:854283
KEGG:sce:YOR116C CYGD:YOR116c OMA:CINELDN NextBio:976257
Genevestigator:P04051 GermOnline:YOR116C Uniprot:P04051
Length = 1460
Score = 472 (171.2 bits), Expect = 9.9e-63, Sum P(2) = 9.9e-63
Identities = 101/217 (46%), Positives = 137/217 (63%)
Query: 245 GHSIGIGD-TIADP--QTYLE-IQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFEN 300
G SIGI D T AD Q E +++A K E +I + K +LE PG QT E
Sbjct: 709 GFSIGINDVTPADDLKQKKEELVEIAYHKCDE-LITLFNKG---ELETQPGCNEEQTLEA 764
Query: 301 QVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP 360
++ +L+ R++ G L +N M GSKGS +N+SQ++A VGQQ + G R+P
Sbjct: 765 KIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVP 824
Query: 361 FGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGY 420
GF+ R+LPHF K+ P+S+GFV NS+ +GL+P EF FHA+ GREGL+DTAVKTAETGY
Sbjct: 825 DGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGY 884
Query: 421 IQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
+ RRL+K++E + YD TVR S ++Q YG DGL
Sbjct: 885 MSRRLMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGL 921
Score = 270 (100.1 bits), Expect = 9.9e-63, Sum P(2) = 9.9e-63
Identities = 59/139 (42%), Positives = 85/139 (61%)
Query: 1261 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1320
L +G L V+ V RT +N + E+F VLGIEA R S+ +E+N + +G+ V+
Sbjct: 1293 LLVEGYGLRDVMCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDP 1352
Query: 1321 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1380
RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DAA + + D + GVS
Sbjct: 1353 RHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVS 1412
Query: 1381 ENIIMGQLPRMGTGCFDLL 1399
E II+GQ +GTG F ++
Sbjct: 1413 ECIILGQTMSIGTGSFKVV 1431
Score = 268 (99.4 bits), Expect = 1.8e-47, Sum P(3) = 1.8e-47
Identities = 73/199 (36%), Positives = 101/199 (50%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q++A VGQQ + G R+P GF+ R+LPHF K+ P+S+GFV NS+ +GL+P EF FHA+
Sbjct: 807 SQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAI 866
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
GREGL+DTAVKTAET + L + + + YD NTV V Y D
Sbjct: 867 SGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYD----NTVRTSANGIVQFTYGGDGLD 922
Query: 1129 PTRISPWLLRIELDRK-----RMT----DKKLTMEAISEKINAGFGDDLNCIFNDDNAEK 1179
P + + +R +T DK L AI E N G + DN+
Sbjct: 923 PLEMEGNAQPVNFNRSWDHAYNITFNNQDKGLLPYAIMETANEILGPLEERLVRYDNSGC 982
Query: 1180 LVLRIRIMNSDDSKMQDEE 1198
LV R + ++ D E
Sbjct: 983 LVKREDLNKAEYVDQYDAE 1001
Score = 209 (78.6 bits), Expect = 2.6e-56, Sum P(2) = 2.6e-56
Identities = 43/107 (40%), Positives = 68/107 (63%)
Query: 776 IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
++ + + R S+ +E+N + +G+ V+ RH+ LL DVMT KG ++ ITR G+++ L
Sbjct: 1325 VLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVL 1384
Query: 836 MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 882
SFE+T D L DAA + + D + GVSE II+GQ +GTG F ++
Sbjct: 1385 QLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKVV 1431
Score = 152 (58.6 bits), Expect = 2.6e-50, Sum P(2) = 2.6e-50
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
S+ +E+N + +G+ V+ RH+ LL DVMT KG ++ ITR G+++ L SFE+T
Sbjct: 1334 SIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTT 1393
Query: 576 DVLMDAAAHAEADPMRG 592
D L DAA + + D + G
Sbjct: 1394 DHLFDAAFYMKKDAVEG 1410
Score = 118 (46.6 bits), Expect = 1.8e-47, Sum P(3) = 1.8e-47
Identities = 49/169 (28%), Positives = 72/169 (42%)
Query: 89 MPQPCILKPKPLWTGKQVFSLIIPGN------VNMTRTHSTH-PDDEDSGPYQWISPGDT 141
+P P I+KP LWTGKQVFSL+I N +N+ + P S P + +S D
Sbjct: 592 IPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPNE-MSQNDG 650
Query: 142 KVVVEHGSLLMGIXXXXXXXXXXXXXXHICFL-ELGHEVCGRFYGNIQTVVNNWLLLEGH 200
V++ +L G+ L + G + + + +L G
Sbjct: 651 FVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGF 710
Query: 201 SIGIGD-TIADP--QTYLE-IQMAIKKAKEDVIEVIQKAHNMDLEPTPG 245
SIGI D T AD Q E +++A K E +I + K +LE PG
Sbjct: 711 SIGINDVTPADDLKQKKEELVEIAYHKCDE-LITLFNKG---ELETQPG 755
Score = 103 (41.3 bits), Expect = 2.7e-30, Sum P(3) = 2.7e-30
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+ RRL+K++E + YD TVR S ++Q YG DGL
Sbjct: 883 GYMSRRLMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGL 921
Score = 40 (19.1 bits), Expect = 1.5e-38, Sum P(2) = 1.5e-38
Identities = 21/78 (26%), Positives = 30/78 (38%)
Query: 1589 LTMEAISEKINAGFGDD--LNTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKL 1646
L ME ++ +N D N + DK L AI E N G + DN+ L
Sbjct: 924 LEMEGNAQPVNFNRSWDHAYNITFNNQDKGLLPYAIMETANEILGPLEERLVRYDNSGCL 983
Query: 1647 VLRIRIMNSDDSKMQDEE 1664
V R + ++ D E
Sbjct: 984 VKREDLNKAEYVDQYDAE 1001
>POMBASE|SPBC651.08c [details] [associations]
symbol:rpc1 "DNA-directed RNA polymerase III complex
large subunit Rpc1 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISO] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
PomBase:SPBC651.08c GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 KO:K03018 OrthoDB:EOG4X3M8C eggNOG:COG0086
GO:GO:0032549 HOGENOM:HOG000222974 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:DQ156227 PIR:T40607 RefSeq:NP_595506.1
ProteinModelPortal:O94666 STRING:O94666 EnsemblFungi:SPBC651.08c.1
GeneID:2541094 KEGG:spo:SPBC651.08c NextBio:20802207 Uniprot:O94666
Length = 1405
Score = 475 (172.3 bits), Expect = 5.7e-61, Sum P(3) = 5.7e-61
Identities = 105/243 (43%), Positives = 147/243 (60%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNR 304
G SIGI D + ++ + KA + I + LE PG T E +++
Sbjct: 689 GFSIGIEDVQPGKSLSSQKEILVNKAYATSDDFIMQYAKGILECQPGMDQEATLEAKISS 748
Query: 305 ILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
L+ RD G L N+ M GSKGS IN+SQ++ACVGQQ + GKR+P GF+
Sbjct: 749 TLSKVRDDVGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQ 808
Query: 365 KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 424
R+LPHF K+ P ++GFV NS+ +GLTP+EF FHA+ GREGL+DTAVKTAETGY+ RR
Sbjct: 809 DRSLPHFHKNSKHPLAKGFVSNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRR 868
Query: 425 LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLC-------GEAVEHQR--IDTVALSHK 475
L+K++E + YD TVR+S ++Q YG+DGL G+AVE +R I +V L++
Sbjct: 869 LMKSLEDLSSAYDGTVRSSNSDVVQFVYGDDGLDPTYMEGDGQAVEFKRTWIHSVNLNYD 928
Query: 476 KFE 478
+ +
Sbjct: 929 RHD 931
Score = 282 (104.3 bits), Expect = 5.3e-45, Sum P(4) = 5.3e-45
Identities = 59/131 (45%), Positives = 82/131 (62%)
Query: 1000 GEIENRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 1059
G ++ +Q++ACVGQQ + GKR+P GF+ R+LPHF K+ P ++GFV NS+ +GLT
Sbjct: 778 GSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHFHKNSKHPLAKGFVSNSFYSGLT 837
Query: 1060 PSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVN 1119
P+EF FHA+ GREGL+DTAVKTAET + L + + + YD TV + + V
Sbjct: 838 PTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSAYD----GTVRSSNSDVVQ 893
Query: 1120 VYYEMPDFDPT 1130
Y DPT
Sbjct: 894 FVYGDDGLDPT 904
Score = 259 (96.2 bits), Expect = 5.7e-61, Sum P(3) = 5.7e-61
Identities = 60/162 (37%), Positives = 92/162 (56%)
Query: 1243 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1302
+ +I ESG+ + L +GT L V++ + +T +N + E+ VLGIEA R S
Sbjct: 1227 RSVINQESGKIE------LFMEGTGLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYS 1280
Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1362
+ E+ + +GL V+ RH+ LL DVMT KG ++ ITR G+ + L SFE+T D
Sbjct: 1281 IISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGITRFGVAKMKDSVLALASFEKTTD 1340
Query: 1363 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
L +AAA D + G+SE I++G+L +GT F L+ E+
Sbjct: 1341 HLFNAAARFAKDSIEGISECIVLGKLAPIGTNVFQLIRRTEE 1382
Score = 198 (74.8 bits), Expect = 1.4e-54, Sum P(3) = 1.4e-54
Identities = 42/112 (37%), Positives = 66/112 (58%)
Query: 776 IIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 835
++ + + R S+ E+ + +GL V+ RH+ LL DVMT KG ++ ITR G+ + L
Sbjct: 1271 VLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGITRFGVAKMKDSVL 1330
Query: 836 MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 887
SFE+T D L +AAA D + G+SE I++G+L +GT F L+ E+
Sbjct: 1331 ALASFEKTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVFQLIRRTEE 1382
Score = 141 (54.7 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
S+ E+ + +GL V+ RH+ LL DVMT KG ++ ITR G+ + L SFE+T
Sbjct: 1280 SIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGITRFGVAKMKDSVLALASFEKTT 1339
Query: 576 DVLMDAAAHAEADPMRG 592
D L +AAA D + G
Sbjct: 1340 DHLFNAAARFAKDSIEG 1356
Score = 107 (42.7 bits), Expect = 6.6e-27, Sum P(4) = 6.6e-27
Identities = 27/69 (39%), Positives = 43/69 (62%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLC-------GEAVEHQR--IDT 642
GY+ RRL+K++E + YD TVR+S ++Q YG+DGL G+AVE +R I +
Sbjct: 863 GYMSRRLMKSLEDLSSAYDGTVRSSNSDVVQFVYGDDGLDPTYMEGDGQAVEFKRTWIHS 922
Query: 643 VALSHKKFE 651
V L++ + +
Sbjct: 923 VNLNYDRHD 931
Score = 97 (39.2 bits), Expect = 5.3e-45, Sum P(4) = 5.3e-45
Identities = 43/198 (21%), Positives = 78/198 (39%)
Query: 89 MPQPCILKPKPLWTGKQVFSLIIPGN------VNMTRTHSTHPDDEDSGPYQWISPGDTK 142
+P P I+KP+ LWTGKQVF++++ N VN+ + + P + P D
Sbjct: 574 LPPPAIIKPRCLWTGKQVFTVLMKPNRFSKVLVNLDAKTRSFSRIKSKTPE--MCPKDGY 631
Query: 143 VVVEHGSLLMGIXXXXXXXXXXXXXX-HICFLELGHEVCGRFYGNIQTVVNNWLLLEGHS 201
+++ + ++ G+ ++ + G + + +L G S
Sbjct: 632 LMIRNSEIIAGVVDKSVVGDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFS 691
Query: 202 IGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYL 261
IGI D + ++ + KA + I + LE PG D + L
Sbjct: 692 IGIEDVQPGKSLSSQKEILVNKAYATSDDFIMQYAKGILECQPG---------MDQEATL 742
Query: 262 E--IQMAIKKAKEDVIEV 277
E I + K ++DV E+
Sbjct: 743 EAKISSTLSKVRDDVGEI 760
Score = 46 (21.3 bits), Expect = 9.8e-40, Sum P(4) = 9.8e-40
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 692 DHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWE 726
D + K I+ ++R + G IS L ++WE
Sbjct: 271 DDLTVKITEIIWTSSLIRAALSKGTPISNLMEQWE 305
Score = 44 (20.5 bits), Expect = 5.7e-61, Sum P(3) = 5.7e-61
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 34 ILGMDPKFARPD 45
+LGMDP+ RP+
Sbjct: 233 LLGMDPEHGRPE 244
>ASPGD|ASPL0000047704 [details] [associations]
symbol:AN10316 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EnsemblFungi:CADANIAT00009238 Uniprot:C8VPJ2
Length = 1445
Score = 485 (175.8 bits), Expect = 7.7e-61, Sum P(3) = 7.7e-61
Identities = 102/213 (47%), Positives = 135/213 (63%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNR 304
G SIGI D + ++ A EVI K LE PG QT ENQ++
Sbjct: 710 GFSIGITDVYPSDRLVQSKNDLVEAAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSG 769
Query: 305 ILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFR 364
IL+ R + G L++YN+ M +GSKGS+IN+SQ++A VGQQ + G+R+ GF+
Sbjct: 770 ILSKVRQQAGDECIAQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQ 829
Query: 365 KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 424
RTLPHF K+ P S+GFV NS+ +GL P EF FHAM GREGL+DTAVKTAETGY+ RR
Sbjct: 830 DRTLPHFPKNARQPPSKGFVRNSFFSGLLPYEFIFHAMSGREGLVDTAVKTAETGYMSRR 889
Query: 425 LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
L+K++E + YD TVRNS ++Q +YG+D L
Sbjct: 890 LMKSLEDLSTGYDDTVRNSSQGIVQFQYGDDKL 922
Score = 274 (101.5 bits), Expect = 1.6e-45, Sum P(4) = 1.6e-45
Identities = 83/262 (31%), Positives = 128/262 (48%)
Query: 955 GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVIAC 1014
G D+L N+ + +L + VR + +A+ + +S G + +Q++A
Sbjct: 756 GCDELQTMENQLSGILSK--VRQQAGDECIAQLSKYNSPLIMATSGSKGSSINVSQMVAL 813
Query: 1015 VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGL 1074
VGQQ + G+R+ GF+ RTLPHF K+ P S+GFV NS+ +GL P EF FHAM GREGL
Sbjct: 814 VGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFFSGLLPYEFIFHAMSGREGL 873
Query: 1075 IDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISP 1134
+DTAVKTAET + L + + + YD +TV Q V Y DP +
Sbjct: 874 VDTAVKTAETGYMSRRLMKSLEDLSTGYD----DTVRNSSQGIVQFQYGDDKLDPVDMEG 929
Query: 1135 WLLRIELDRKRMTDKKLTMEAISEKIN-AGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK 1193
+ DR + + T + ++ A + + + + A KL R +M ++
Sbjct: 930 KAKPVHFDRTFIHAETTTYKNEERSLSPAEIMEVCEEMLSKERA-KLA-RYDLMGAELDY 987
Query: 1194 MQDEEDAVDKMEDDM-FLRCIE 1214
M + VD+ E FL I+
Sbjct: 988 MDRSDHGVDQFESARDFLDSIQ 1009
Score = 245 (91.3 bits), Expect = 7.7e-61, Sum P(3) = 7.7e-61
Identities = 60/163 (36%), Positives = 96/163 (58%)
Query: 1237 PQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGI 1296
PQ + + II T+ K+ + LL +G L + ++ +D +RT SN++ E +VLGI
Sbjct: 1256 PQAN--RAIIRTDD---KSDTNTLL-VEGYGLRQCMNTVGIDGLRTRSNNVMETREVLGI 1309
Query: 1297 EAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1356
EA R ++ +E++ V++ + ++ RH+ LL DVMT KG ++ ITR G+ + L S
Sbjct: 1310 EAARSTIIQEISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLAS 1367
Query: 1357 FEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1399
FE+T D L DA D + GVSE IIMG+ +GTG +++
Sbjct: 1368 FEKTADHLFDAGGAGRTDLIEGVSECIIMGKTVSLGTGAMEVV 1410
Score = 181 (68.8 bits), Expect = 3.8e-54, Sum P(3) = 3.8e-54
Identities = 38/108 (35%), Positives = 65/108 (60%)
Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
+++ + + R ++ +E++ V++ + ++ RH+ LL DVMT KG ++ ITR G+ +
Sbjct: 1305 EVLGIEAARSTIIQEISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSV 1362
Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 882
L SFE+T D L DA D + GVSE IIMG+ +GTG +++
Sbjct: 1363 LQLASFEKTADHLFDAGGAGRTDLIEGVSECIIMGKTVSLGTGAMEVV 1410
Score = 124 (48.7 bits), Expect = 3.4e-48, Sum P(3) = 3.4e-48
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
+++ +E++ V++ + ++ RH+ LL DVMT KG ++ ITR G+ + L SFE+T
Sbjct: 1314 STIIQEISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKT 1371
Query: 575 VDVLMDAAAHAEADPMRG 592
D L DA D + G
Sbjct: 1372 ADHLFDAGGAGRTDLIEG 1389
Score = 122 (48.0 bits), Expect = 1.6e-45, Sum P(4) = 1.6e-45
Identities = 39/164 (23%), Positives = 63/164 (38%)
Query: 89 MPQPCILKPKPLWTGKQVFSLIIPGN------VNMTRTHSTHPDDEDSGPYQWISPGDTK 142
+P P + KP+ LWTGKQVF++++ N VN+ + + P + P D+
Sbjct: 594 LPPPAVFKPQMLWTGKQVFNILMRPNKDDPVLVNLDAACKQFKPPKGNQPRD-LDPNDSW 652
Query: 143 VVVEHGSLLMGIXXXXXXXXXXXXXX-HICFLELGHEVCGRFYGNIQTVVNNWLLLEGHS 201
+VV + ++ G+ +I + G + + W G S
Sbjct: 653 LVVRNSEVMCGVMDKSTVGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFSNMGFS 712
Query: 202 IGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPG 245
IGI D + ++ A EVI K LE PG
Sbjct: 713 IGITDVYPSDRLVQSKNDLVEAAYAQCDEVIAKYKAGTLEKYPG 756
Score = 102 (41.0 bits), Expect = 1.0e-27, Sum P(4) = 1.0e-27
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+ RRL+K++E + YD TVRNS ++Q +YG+D L
Sbjct: 884 GYMSRRLMKSLEDLSTGYDDTVRNSSQGIVQFQYGDDKL 922
Score = 47 (21.6 bits), Expect = 7.7e-61, Sum P(3) = 7.7e-61
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 34 ILGMDPKFARPD 45
+LG+DPK ARP+
Sbjct: 254 LLGLDPKEARPE 265
>UNIPROTKB|E9PTB6 [details] [associations]
symbol:Polr3a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0032728
"positive regulation of interferon-beta production" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:1305574 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
IPI:IPI00766228 PRIDE:E9PTB6 Ensembl:ENSRNOT00000013501
Uniprot:E9PTB6
Length = 1342
Score = 509 (184.2 bits), Expect = 1.2e-60, Sum P(2) = 1.2e-60
Identities = 107/220 (48%), Positives = 142/220 (64%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAK-EDVIEVIQKAHNMDLEPTPGNTLRQTFENQVN 303
G SIGIGD + Q L+ + + A + E I+ + L+ PG T +T E +
Sbjct: 695 GFSIGIGD-VTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALIL 753
Query: 304 RILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGF 363
+ L+ RD G + + L + N+ M + GSKGS INISQ+IACVGQQ + G R+P GF
Sbjct: 754 KELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGF 813
Query: 364 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 423
R+LPHF K P ++GFV NS+ +GLTP+EFFFH M GREGL+DTAVKTAETGY+QR
Sbjct: 814 ENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQR 873
Query: 424 RLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE 463
RL+K++E + YD TVR+S G +IQ YG DGL A+E
Sbjct: 874 RLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913
Score = 269 (99.8 bits), Expect = 4.0e-43, Sum P(3) = 4.0e-43
Identities = 49/76 (64%), Positives = 60/76 (78%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+IACVGQQ + G R+P GF R+LPHF K P ++GFV NS+ +GLTP+EFFFH M
Sbjct: 793 SQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTM 852
Query: 1069 GGREGLIDTAVKTAET 1084
GREGL+DTAVKTAET
Sbjct: 853 AGREGLVDTAVKTAET 868
Score = 211 (79.3 bits), Expect = 1.2e-60, Sum P(2) = 1.2e-60
Identities = 51/161 (31%), Positives = 85/161 (52%)
Query: 1218 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1277
L + +QGI + + +H+ + K++ FK + + G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------FKLLVE------GDNLRAVMATHGV 1241
Query: 1278 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1337
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1338 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1378
ITR G+ + LM SFE+T D L DAA + D + G
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCG 1342
Score = 144 (55.7 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 30/87 (34%), Positives = 50/87 (57%)
Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
K + + + R ++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ +
Sbjct: 1256 KTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESV 1315
Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRG 861
LM SFE+T D L DAA + D + G
Sbjct: 1316 LMLASFEKTADHLFDAAYFGQKDSVCG 1342
Score = 141 (54.7 bits), Expect = 2.7e-53, Sum P(2) = 2.7e-53
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
T++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ + LM SFE+T
Sbjct: 1265 TTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKT 1324
Query: 575 VDVLMDAAAHAEADPMRG 592
D L DAA + D + G
Sbjct: 1325 ADHLFDAAYFGQKDSVCG 1342
Score = 133 (51.9 bits), Expect = 4.0e-43, Sum P(3) = 4.0e-43
Identities = 41/161 (25%), Positives = 70/161 (43%)
Query: 88 KMPQPCILKPKPLWTGKQVFSLII-PGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVE 146
++P P ILKP LWTGKQ+FS+I+ P + N R + + G + + D+ V ++
Sbjct: 582 RLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCTNDSYVTIQ 641
Query: 147 HGSLLMG-IXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIG 205
+ L+ G + +I + G + + +L G SIGIG
Sbjct: 642 NSELMCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIG 701
Query: 206 DTIADPQTYLEIQMAIKKAK-EDVIEVIQKAHNMDLEPTPG 245
D + Q L+ + + A + E I+ + L+ PG
Sbjct: 702 D-VTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPG 741
Score = 123 (48.4 bits), Expect = 8.7e-28, Sum P(3) = 8.7e-28
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVE 636
GY+QRRL+K++E + YD TVR+S G +IQ YG DGL A+E
Sbjct: 869 GYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913
Score = 45 (20.9 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 301 QVNRILNDARDKTGGSAKKSLTEYNNLKA-MVVAGSKGS 338
+V+R + +++G K L E +NL+A M G KG+
Sbjct: 1206 EVSRAVIHIDEQSGKEKFKLLVEGDNLRAVMATHGVKGT 1244
Score = 43 (20.2 bits), Expect = 5.5e-43, Sum P(2) = 5.5e-43
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 1586 DKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEK 1625
D+ L + + + I A + LS + LT EAI +K
Sbjct: 916 DEPLEFKRVLDNIKAVYPCQSERALSKNELTLTTEAIMKK 955
Score = 42 (19.8 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 682 VISELEKEM-VDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKL 728
V+S+L+ D + K IF DV+++ SG + ++W+ L
Sbjct: 266 VVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFL 313
>UNIPROTKB|F1SVC3 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
OMA:CLLNETT PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:CU570839 Ensembl:ENSSSCT00000009008 Uniprot:F1SVC3
Length = 1723
Score = 411 (149.7 bits), Expect = 2.4e-56, Sum P(3) = 2.4e-56
Identities = 122/411 (29%), Positives = 191/411 (46%)
Query: 65 MHGSARNQEQMMNILMFLPIWD--G--KMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRT 120
+ G +EQ M L++ + D G K+ P ILKP PLWTGKQV S ++ + +
Sbjct: 647 IRGCFFTREQYME-LVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDQI 705
Query: 121 HSTHPDDEDSGPYQWIS------PG-------DTKVVVEHGSLLMGIXXXXXXXXXXXXX 167
G W+ PG +++VV+ G LL G+
Sbjct: 706 PLNLLGKAKIGGKAWVKEAPRPVPGFNPNLMCESQVVIRDGELLCGVLDKAHYGSSAYGL 765
Query: 168 XHICFLELGHEVCGRFYGNIQTVVNNWL-LLEGHSIGIGDTIADPQTYLEIQMAIKKAKE 226
H C+ G E G+ + + +L L G ++G+ D + P+ + I+++
Sbjct: 766 VHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPRADVRRHRIIEESTR 825
Query: 227 DVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 286
++ A N+ P+ + ++V Q AH +
Sbjct: 826 CGPRAVRAALNL------------------PEA---------ASCDEVRGKWQDAH-LSK 857
Query: 287 EPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVI 346
+ N + F+ +VN N+ NNL+ MV +G+KGS +N Q+
Sbjct: 858 DQRDFNMIDLKFKEEVNHHSNEINKACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQIS 917
Query: 347 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 406
+GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M GRE
Sbjct: 918 CLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGRE 977
Query: 407 GLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
GL+DTAVKT+ +GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL
Sbjct: 978 GLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 1028
Score = 210 (79.0 bits), Expect = 2.4e-56, Sum P(3) = 2.4e-56
Identities = 51/156 (32%), Positives = 84/156 (53%)
Query: 1244 RIIITESGEFKAIADWLLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKS 1302
R ++ E+ K + +L T+G +L ++ +V D R +SNDI + GIEA +
Sbjct: 1564 RCLLNETTNSKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRV 1623
Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1362
+EKE+ V YG+ V+ RHL+L+ D M +G + R GI R ++ L + +FE +
Sbjct: 1624 IEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQ 1682
Query: 1363 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1398
L A D +R S +++G++ R GTG F+L
Sbjct: 1683 FLKQATMMGSHDELRSPSACLVVGKVVRGGTGLFEL 1718
Score = 179 (68.1 bits), Expect = 5.5e-24, Sum P(3) = 5.5e-24
Identities = 37/93 (39%), Positives = 55/93 (59%)
Query: 1012 IACV-GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 1070
I+C+ GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M G
Sbjct: 916 ISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAG 975
Query: 1071 REGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
REGL+DTAVKT+ + + + + + YD
Sbjct: 976 REGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1008
Score = 155 (59.6 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
Identities = 41/146 (28%), Positives = 75/146 (51%)
Query: 736 REIFSSGESNVVLPCNLMEVIFILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQ 795
+E+ + E + LP L + +L +L+ N+ + + + + + +EKE+ V
Sbjct: 1577 KELVLNTEG-INLP-ELFKYAEVLDLRRLYSND-IHAMANTYGIEAALRVIEKEIKDVFA 1633
Query: 796 FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE 855
YG+ V+ RHL+L+ D M +G + R GI R ++ L + +FE + L A
Sbjct: 1634 VYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQATMMGS 1692
Query: 856 ADPMRGVSENIIMGQLPRMGTGCFDL 881
D +R S +++G++ R GTG F+L
Sbjct: 1693 HDELRSPSACLVVGKVVRGGTGLFEL 1718
Score = 119 (46.9 bits), Expect = 2.4e-56, Sum P(3) = 2.4e-56
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL
Sbjct: 990 GYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 1028
Score = 108 (43.1 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 514 LTSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 573
L +EKE+ V YG+ V+ RHL+L+ D M +G + R GI R ++ L + +FE
Sbjct: 1621 LRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFET 1679
Query: 574 TVDVLMDAAAHAEADPMR 591
+ L A D +R
Sbjct: 1680 SFQFLKQATMMGSHDELR 1697
Score = 45 (20.9 bits), Expect = 5.5e-24, Sum P(3) = 5.5e-24
Identities = 21/80 (26%), Positives = 32/80 (40%)
Query: 764 LWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYV----NYRHLALLCDVMTAKG-- 817
LW NE+ F +F+ +E N + F V YR + L D M G
Sbjct: 270 LWKNEDTGFFLNYLFLGLEDVGLESRFNPSMFFLDFLVVPPSRYRPVNRLGDQMFTNGQT 329
Query: 818 -HLMAITRHGINRQDTGALM 836
+L A+ + + + ALM
Sbjct: 330 VNLQAVMKDVVLIRKLLALM 349
>UNIPROTKB|E1BIX2 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11 CTD:25885
GeneTree:ENSGT00550000074861 EMBL:DAAA02031123 IPI:IPI00714586
RefSeq:NP_001179805.1 UniGene:Bt.52712 PRIDE:E1BIX2
Ensembl:ENSBTAT00000008496 GeneID:536316 KEGG:bta:536316
NextBio:20876927 Uniprot:E1BIX2
Length = 1717
Score = 428 (155.7 bits), Expect = 3.4e-56, Sum P(4) = 3.4e-56
Identities = 129/411 (31%), Positives = 193/411 (46%)
Query: 65 MHGSARNQEQMMNILMFLPIWD--G--KMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRT 120
+ G N+EQ M L+F + D G K+ P ILKP PLWTGKQV S ++ +
Sbjct: 643 IRGCFFNREQYME-LVFRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHI 701
Query: 121 HSTHPDDEDSGPYQWIS------PG-------DTKVVVEHGSLLMGIXXXXXXXXXXXXX 167
G W+ PG +++V++ G LL G+
Sbjct: 702 PLNLSGKAKIGGKAWVKESPRLVPGFNPDSMCESQVIIRAGELLCGVLDKAHYGSSAYGL 761
Query: 168 XHICFLELGHEVCGRFYGNIQTVVNNWL-LLEGHSIGIGDTIADPQTYLEIQMAIKKAKE 226
H C+ G E GR + + +L L G ++G+ D + P K
Sbjct: 762 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKP-------------KA 808
Query: 227 DVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 286
DV + H + + T H G + L + A+ + ++V Q AH +
Sbjct: 809 DV-----RRHGIIEDST--HC---GPRAV--RAALNLPEAV--SCDEVQGKWQDAH-LSK 853
Query: 287 EPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVI 346
+ N + F+ +VN N+ NNL+ MV +G+KGS +N Q+
Sbjct: 854 DQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQIS 913
Query: 347 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 406
+GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M GRE
Sbjct: 914 CLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGRE 973
Query: 407 GLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
GL+DTAVKT+ +GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL
Sbjct: 974 GLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 1024
Score = 205 (77.2 bits), Expect = 3.4e-56, Sum P(4) = 3.4e-56
Identities = 50/156 (32%), Positives = 84/156 (53%)
Query: 1244 RIIITESGEFKAIADWLLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKS 1302
R ++ E+ K + +L T+G +L ++ +V D R +SNDI + GIEA +
Sbjct: 1558 RCLLNETINSKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAMASTYGIEAALRV 1617
Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1362
+EKE+ V YG+ V+ RHL+L+ D M +G + R GI R ++ L + +FE +
Sbjct: 1618 IEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQ 1676
Query: 1363 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1398
L A D +R S +++G++ + GTG F+L
Sbjct: 1677 FLKQATLMGSHDELRSPSACLVVGKVVKGGTGLFEL 1712
Score = 179 (68.1 bits), Expect = 1.3e-21, Sum P(4) = 1.3e-21
Identities = 37/93 (39%), Positives = 55/93 (59%)
Query: 1012 IACV-GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 1070
I+C+ GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M G
Sbjct: 912 ISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAG 971
Query: 1071 REGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
REGL+DTAVKT+ + + + + + YD
Sbjct: 972 REGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004
Score = 152 (58.6 bits), Expect = 4.0e-52, Sum P(3) = 4.0e-52
Identities = 40/146 (27%), Positives = 75/146 (51%)
Query: 736 REIFSSGESNVVLPCNLMEVIFILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQ 795
+E+ + E + LP L + +L +L+ N+ + + + + + +EKE+ V
Sbjct: 1571 KELVLNTEG-INLP-ELFKYAEVLDLRRLYSND-IHAMASTYGIEAALRVIEKEIKDVFA 1627
Query: 796 FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE 855
YG+ V+ RHL+L+ D M +G + R GI R ++ L + +FE + L A
Sbjct: 1628 VYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQATLMGS 1686
Query: 856 ADPMRGVSENIIMGQLPRMGTGCFDL 881
D +R S +++G++ + GTG F+L
Sbjct: 1687 HDELRSPSACLVVGKVVKGGTGLFEL 1712
Score = 119 (46.9 bits), Expect = 3.4e-56, Sum P(4) = 3.4e-56
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL
Sbjct: 986 GYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 1024
Score = 108 (43.1 bits), Expect = 9.7e-41, Sum P(2) = 9.7e-41
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 514 LTSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 573
L +EKE+ V YG+ V+ RHL+L+ D M +G + R GI R ++ L + +FE
Sbjct: 1615 LRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFET 1673
Query: 574 TVDVLMDAAAHAEADPMR 591
+ L A D +R
Sbjct: 1674 SFQFLKQATLMGSHDELR 1691
Score = 40 (19.1 bits), Expect = 1.3e-21, Sum P(4) = 1.3e-21
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 920 PQ-MTPW-AQST--PAYNAL-MSPGAAMTPGGPGFSPSVAGEDQLSKQA 963
PQ +TPW Q N M PGA+M G +++ D ++A
Sbjct: 469 PQPVTPWNVQELRQAVINGPNMHPGASMVINEDGSRTALSASDLTQREA 517
Score = 37 (18.1 bits), Expect = 3.4e-56, Sum P(4) = 3.4e-56
Identities = 6/18 (33%), Positives = 14/18 (77%)
Query: 1191 DSKMQDEEDAVDKMEDDM 1208
DS+ ++E++ +K E+D+
Sbjct: 1428 DSEEEEEKEEEEKEEEDI 1445
Score = 37 (18.1 bits), Expect = 3.9e-40, Sum P(3) = 3.9e-40
Identities = 6/18 (33%), Positives = 14/18 (77%)
Query: 1657 DSKMQDEEDAVDKMEDDM 1674
DS+ ++E++ +K E+D+
Sbjct: 1428 DSEEEEEKEEEEKEEEDI 1445
Score = 37 (18.1 bits), Expect = 2.6e-21, Sum P(4) = 2.6e-21
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 947 PGFSPSVAGEDQLSKQANE 965
PGF+P E Q+ +A E
Sbjct: 725 PGFNPDSMCESQVIIRAGE 743
>UNIPROTKB|J9P5G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K02999 PANTHER:PTHR19376:SF11
CTD:25885 GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
RefSeq:XP_532976.3 Ensembl:ENSCAFT00000047500 GeneID:475766
KEGG:cfa:475766 Uniprot:J9P5G4
Length = 1717
Score = 412 (150.1 bits), Expect = 3.8e-56, Sum P(3) = 3.8e-56
Identities = 129/411 (31%), Positives = 195/411 (47%)
Query: 65 MHGSARNQEQMMNILMFLPIWD--G--KMPQPCILKPKPLWTGKQVFSL----IIP-GNV 115
+ G +EQ M +L + + D G K+ P ILKP PLWTGKQV S IIP ++
Sbjct: 643 IRGCFFTREQYMELL-YRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHI 701
Query: 116 NMTRTHSTHPD-----DEDSGPYQWISPG---DTKVVVEHGSLLMGIXXXXXXXXXXXXX 167
++ + E P +P +++V++ G LL G+
Sbjct: 702 PLSLSGKAKISGKAWVQESPRPVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 761
Query: 168 XHICFLELGHEVCGRFYGNIQTVVNNWL-LLEGHSIGIGDTIADPQTYLEIQMAIKKAKE 226
H C+ G E G+ + + +L L G ++G+ D + K K
Sbjct: 762 VHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILV-------------KRKA 808
Query: 227 DVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 286
D+ K H + E T H G + L + A + ++V Q AH +
Sbjct: 809 DM-----KRHLVIEEST--HC---GPRAV--RAALNLPEAA--SCDEVRGKWQDAH-LGK 853
Query: 287 EPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVI 346
+ N + F+ +VN N+ NNL+ MV +G+KGS +N Q+
Sbjct: 854 DQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPDNNLQMMVQSGAKGSTVNTMQIS 913
Query: 347 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 406
+GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M GRE
Sbjct: 914 CLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGRE 973
Query: 407 GLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
GL+DTAVKT+ +GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL
Sbjct: 974 GLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 1024
Score = 207 (77.9 bits), Expect = 3.8e-56, Sum P(3) = 3.8e-56
Identities = 50/156 (32%), Positives = 84/156 (53%)
Query: 1244 RIIITESGEFKAIADWLLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKS 1302
R ++ E+ K + +L T+G +L ++ +V D R +SNDI + GIEA +
Sbjct: 1558 RCLLNETTNKKNEKELVLNTEGINLPELFKYAEVLDLSRLYSNDIHAMASTYGIEAALRV 1617
Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1362
+EKE+ V YG+ V+ RHL+L+ D M +G + R GI R ++ L + +FE +
Sbjct: 1618 IEKEIRDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQ 1676
Query: 1363 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1398
L A D +R S +++G++ + GTG F+L
Sbjct: 1677 FLKQATMMGSHDELRSPSACLVVGKVVKGGTGLFEL 1712
Score = 179 (68.1 bits), Expect = 5.5e-24, Sum P(3) = 5.5e-24
Identities = 37/93 (39%), Positives = 55/93 (59%)
Query: 1012 IACV-GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 1070
I+C+ GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M G
Sbjct: 912 ISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAG 971
Query: 1071 REGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
REGL+DTAVKT+ + + + + + YD
Sbjct: 972 REGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004
Score = 152 (58.6 bits), Expect = 2.1e-50, Sum P(3) = 2.1e-50
Identities = 40/146 (27%), Positives = 75/146 (51%)
Query: 736 REIFSSGESNVVLPCNLMEVIFILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQ 795
+E+ + E + LP L + +L +L+ N+ + + + + + +EKE+ V
Sbjct: 1571 KELVLNTEG-INLP-ELFKYAEVLDLSRLYSND-IHAMASTYGIEAALRVIEKEIRDVFA 1627
Query: 796 FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE 855
YG+ V+ RHL+L+ D M +G + R GI R ++ L + +FE + L A
Sbjct: 1628 VYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQATMMGS 1686
Query: 856 ADPMRGVSENIIMGQLPRMGTGCFDL 881
D +R S +++G++ + GTG F+L
Sbjct: 1687 HDELRSPSACLVVGKVVKGGTGLFEL 1712
Score = 119 (46.9 bits), Expect = 3.8e-56, Sum P(3) = 3.8e-56
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL
Sbjct: 986 GYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 1024
Score = 108 (43.1 bits), Expect = 5.0e-39, Sum P(2) = 5.0e-39
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 514 LTSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 573
L +EKE+ V YG+ V+ RHL+L+ D M +G + R GI R ++ L + +FE
Sbjct: 1615 LRVIEKEIRDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFET 1673
Query: 574 TVDVLMDAAAHAEADPMR 591
+ L A D +R
Sbjct: 1674 SFQFLKQATMMGSHDELR 1691
Score = 48 (22.0 bits), Expect = 5.5e-24, Sum P(3) = 5.5e-24
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 299 ENQVNRILNDARDKTGGSAKKSLTEYN-NLKAMVVAGSKGSNI-NI----SQVIACVGQQ 352
E +NR L + D T ++ L +Y + + G G+++ N+ S++IA +
Sbjct: 139 ERILNRFLEENADPTAFKIQEELEQYTAKIVQNNLLGPHGAHVKNVCDSRSKLIAYFWKA 198
Query: 353 NVEGKRIP 360
++ KR P
Sbjct: 199 HMTAKRCP 206
>UNIPROTKB|E2R0G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
Ensembl:ENSCAFT00000012228 Uniprot:E2R0G4
Length = 1746
Score = 412 (150.1 bits), Expect = 4.0e-56, Sum P(3) = 4.0e-56
Identities = 129/411 (31%), Positives = 195/411 (47%)
Query: 65 MHGSARNQEQMMNILMFLPIWD--G--KMPQPCILKPKPLWTGKQVFSL----IIP-GNV 115
+ G +EQ M +L + + D G K+ P ILKP PLWTGKQV S IIP ++
Sbjct: 655 IRGCFFTREQYMELL-YRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHI 713
Query: 116 NMTRTHSTHPD-----DEDSGPYQWISPG---DTKVVVEHGSLLMGIXXXXXXXXXXXXX 167
++ + E P +P +++V++ G LL G+
Sbjct: 714 PLSLSGKAKISGKAWVQESPRPVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 773
Query: 168 XHICFLELGHEVCGRFYGNIQTVVNNWL-LLEGHSIGIGDTIADPQTYLEIQMAIKKAKE 226
H C+ G E G+ + + +L L G ++G+ D + K K
Sbjct: 774 VHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILV-------------KRKA 820
Query: 227 DVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 286
D+ K H + E T H G + L + A + ++V Q AH +
Sbjct: 821 DM-----KRHLVIEEST--HC---GPRAV--RAALNLPEAA--SCDEVRGKWQDAH-LGK 865
Query: 287 EPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVI 346
+ N + F+ +VN N+ NNL+ MV +G+KGS +N Q+
Sbjct: 866 DQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPDNNLQMMVQSGAKGSTVNTMQIS 925
Query: 347 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 406
+GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M GRE
Sbjct: 926 CLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGRE 985
Query: 407 GLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
GL+DTAVKT+ +GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL
Sbjct: 986 GLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 1036
Score = 207 (77.9 bits), Expect = 4.0e-56, Sum P(3) = 4.0e-56
Identities = 50/156 (32%), Positives = 84/156 (53%)
Query: 1244 RIIITESGEFKAIADWLLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKS 1302
R ++ E+ K + +L T+G +L ++ +V D R +SNDI + GIEA +
Sbjct: 1587 RCLLNETTNKKNEKELVLNTEGINLPELFKYAEVLDLSRLYSNDIHAMASTYGIEAALRV 1646
Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1362
+EKE+ V YG+ V+ RHL+L+ D M +G + R GI R ++ L + +FE +
Sbjct: 1647 IEKEIRDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQ 1705
Query: 1363 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1398
L A D +R S +++G++ + GTG F+L
Sbjct: 1706 FLKQATMMGSHDELRSPSACLVVGKVVKGGTGLFEL 1741
Score = 179 (68.1 bits), Expect = 8.4e-23, Sum P(4) = 8.4e-23
Identities = 37/93 (39%), Positives = 55/93 (59%)
Query: 1012 IACV-GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 1070
I+C+ GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M G
Sbjct: 924 ISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAG 983
Query: 1071 REGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
REGL+DTAVKT+ + + + + + YD
Sbjct: 984 REGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1016
Score = 152 (58.6 bits), Expect = 2.3e-50, Sum P(3) = 2.3e-50
Identities = 40/146 (27%), Positives = 75/146 (51%)
Query: 736 REIFSSGESNVVLPCNLMEVIFILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQ 795
+E+ + E + LP L + +L +L+ N+ + + + + + +EKE+ V
Sbjct: 1600 KELVLNTEG-INLP-ELFKYAEVLDLSRLYSND-IHAMASTYGIEAALRVIEKEIRDVFA 1656
Query: 796 FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE 855
YG+ V+ RHL+L+ D M +G + R GI R ++ L + +FE + L A
Sbjct: 1657 VYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQATMMGS 1715
Query: 856 ADPMRGVSENIIMGQLPRMGTGCFDL 881
D +R S +++G++ + GTG F+L
Sbjct: 1716 HDELRSPSACLVVGKVVKGGTGLFEL 1741
Score = 119 (46.9 bits), Expect = 4.0e-56, Sum P(3) = 4.0e-56
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL
Sbjct: 998 GYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 1036
Score = 108 (43.1 bits), Expect = 5.3e-39, Sum P(2) = 5.3e-39
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 514 LTSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 573
L +EKE+ V YG+ V+ RHL+L+ D M +G + R GI R ++ L + +FE
Sbjct: 1644 LRVIEKEIRDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFET 1702
Query: 574 TVDVLMDAAAHAEADPMR 591
+ L A D +R
Sbjct: 1703 SFQFLKQATMMGSHDELR 1720
Score = 45 (20.9 bits), Expect = 8.4e-23, Sum P(4) = 8.4e-23
Identities = 16/70 (22%), Positives = 32/70 (45%)
Query: 299 ENQVNRILNDARDKTGGSAKKSLTEYN-NLKAMVVAGSKGSNINI-------SQVIACVG 350
E +NR L + D T ++ L +Y + + G G+++ + S++IA
Sbjct: 139 ERILNRFLEENADPTAFKIQEELEQYTAKIVQNNLLGPHGAHVEVKNVCDSRSKLIAYFW 198
Query: 351 QQNVEGKRIP 360
+ ++ KR P
Sbjct: 199 KAHMTAKRCP 208
Score = 42 (19.8 bits), Expect = 8.4e-23, Sum P(4) = 8.4e-23
Identities = 27/118 (22%), Positives = 45/118 (38%)
Query: 726 EKLCEDREALREIFSSGESNVVLPCNLMEVIFILQRWKLWGNENLRFLCKIIFVLSVRKS 785
E+ D++ + E G+ + P + E + L W NE+ F +F
Sbjct: 246 EEAAGDKKGIEET-QLGKRGYLTPTSAREHLTAL-----WKNEDTGFFLNYLFSGLEDVD 299
Query: 786 VEKEMNTVLQFYGLYV----NYRHLALLCDVMTAKG---HLMAITRHGINRQDTGALM 836
+E N + F V YR + L D M G +L A+ + + + ALM
Sbjct: 300 MESRFNPSVFFLDFLVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDMVLIRKLLALM 357
>RGD|620824 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISO;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IDA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:620824
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 KO:K02999 PANTHER:PTHR19376:SF11 CTD:25885
HOGENOM:HOG000205401 HOVERGEN:HBG017741 OrthoDB:EOG41VK23
EMBL:AF025425 IPI:IPI00199160 PIR:T14103 RefSeq:NP_113960.1
UniGene:Rn.24877 ProteinModelPortal:O54889 STRING:O54889
PhosphoSite:O54889 PRIDE:O54889 GeneID:83581 KEGG:rno:83581
UCSC:RGD:620824 InParanoid:O54889 NextBio:616111
ArrayExpress:O54889 Genevestigator:O54889 Uniprot:O54889
Length = 1716
Score = 427 (155.4 bits), Expect = 7.1e-56, Sum P(4) = 7.1e-56
Identities = 130/411 (31%), Positives = 197/411 (47%)
Query: 65 MHGSARNQEQMMNILMFLPIWD--G--KMPQPCILKPKPLWTGKQVFSL----IIPGN-- 114
+ G +EQ M L++ + D G K+ P ILKP PLWTGKQV S IIP +
Sbjct: 650 IRGCFFTREQYME-LVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYT 708
Query: 115 -VNMT---RTHSTHPDDEDSGPYQWISPG---DTKVVVEHGSLLMGIXXXXXXXXXXXXX 167
+N+T + S E P P +++V++ G LL G+
Sbjct: 709 PLNLTGKAKIGSKAWVKEKPRPVPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 768
Query: 168 XHICFLELGHEVCGRFYGNIQTVVNNWL-LLEGHSIGIGDTIADPQTYLEIQMAIKKAKE 226
H C+ G E GR + + +L L G ++G+ D + P + Q I+++ +
Sbjct: 769 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVMRQRIIEESTQ 828
Query: 227 DVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 286
++ A N+ P D EIQ K ++ + Q+ NM
Sbjct: 829 CGPRAVRAALNL---PEAAS--------CD-----EIQ---GKWQDAIWRKDQRDFNM-- 867
Query: 287 EPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVI 346
+ F+ +VN N+ NNL+ MV +G+KGS +N Q+
Sbjct: 868 -------IDMKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQIS 920
Query: 347 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 406
+GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M GRE
Sbjct: 921 CLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGRE 980
Query: 407 GLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
GL+DTAVKT+ +GY+QR +IK +E +++ YD TVR+S G ++Q YGEDGL
Sbjct: 981 GLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGL 1031
Score = 204 (76.9 bits), Expect = 7.1e-56, Sum P(4) = 7.1e-56
Identities = 58/224 (25%), Positives = 110/224 (49%)
Query: 1177 AEKLVLRIRIMNSDDSKMQDEE-DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMH 1235
AE + RI+ + S ++D + D + + + ++ + DM+ + ++
Sbjct: 1491 AEAMERRIQAVRESHSFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVSLAHNAIVY 1550
Query: 1236 LPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVL 1294
T R ++ E+ K +++L T+G +L ++ +V D R +SNDI +
Sbjct: 1551 T--TKGITRCLLNETINSKNEKEFVLNTEGINLPELFKYSEVLDLRRLYSNDIHAVANTY 1608
Query: 1295 GIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1354
GIEA + +EKE+ V YG+ V+ RHL+L+ D M +G + R GI + + L +
Sbjct: 1609 GIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-QSSSSPLQQ 1667
Query: 1355 CSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1398
+FE + L A D ++ S +++G++ + GTG F+L
Sbjct: 1668 MTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFEL 1711
Score = 180 (68.4 bits), Expect = 1.3e-22, Sum P(4) = 1.3e-22
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 1012 IACV-GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 1070
I+C+ GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M G
Sbjct: 919 ISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAG 978
Query: 1071 REGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
REGL+DTAVKT+ + + + + I YD
Sbjct: 979 REGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYD 1011
Score = 142 (55.0 bits), Expect = 7.2e-51, Sum P(3) = 7.2e-51
Identities = 37/143 (25%), Positives = 70/143 (48%)
Query: 739 FSSGESNVVLPCNLMEVIFILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYG 798
F + LP L + +L +L+ N+ + + + + + +EKE+ V YG
Sbjct: 1572 FVLNTEGINLP-ELFKYSEVLDLRRLYSND-IHAVANTYGIEAALRVIEKEIKDVFAVYG 1629
Query: 799 LYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADP 858
+ V+ RHL+L+ D M +G + R GI + + L + +FE + L A D
Sbjct: 1630 IAVDPRHLSLVADYMCFEGVYKPLNRFGI-QSSSSPLQQMTFETSFQFLKQATMMGSHDE 1688
Query: 859 MRGVSENIIMGQLPRMGTGCFDL 881
++ S +++G++ + GTG F+L
Sbjct: 1689 LKSPSACLVVGKVVKGGTGLFEL 1711
Score = 118 (46.6 bits), Expect = 7.1e-56, Sum P(4) = 7.1e-56
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR +IK +E +++ YD TVR+S G ++Q YGEDGL
Sbjct: 993 GYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGL 1031
Score = 100 (40.3 bits), Expect = 8.6e-40, Sum P(2) = 8.6e-40
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 514 LTSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 573
L +EKE+ V YG+ V+ RHL+L+ D M +G + R GI + + L + +FE
Sbjct: 1614 LRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-QSSSSPLQQMTFET 1672
Query: 574 TVDVLMDAAAHAEADPMR 591
+ L A D ++
Sbjct: 1673 SFQFLKQATMMGSHDELK 1690
Score = 50 (22.7 bits), Expect = 1.3e-22, Sum P(4) = 1.3e-22
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 299 ENQVNRILNDARDKTGGSAKKSLTEYNN-LKAMVVAGSKGSNI-NI----SQVIACVGQQ 352
E ++R L + D + ++ L EY + + + GS+G+++ N+ S+++A +
Sbjct: 139 ERILSRFLEETSDPSAFEIQEELEEYTSKILQNNLLGSQGAHVKNVCESRSKLVAHFWKT 198
Query: 353 NVEGKRIP 360
++ KR P
Sbjct: 199 HMAAKRCP 206
Score = 41 (19.5 bits), Expect = 2.5e-40, Sum P(3) = 2.5e-40
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 1528 FLDKVTANT-AIYYDPDPQNTVIPEDQEFVNVYYEMPD 1564
F K+ A A+ + QN PE Q+ + +++E+ +
Sbjct: 1099 FSQKIQAAVKALNLEGKTQNGRSPETQQMLQMWHELDE 1136
Score = 41 (19.5 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 114 NVNMTRTHSTHPDDEDSG 131
N+ H TH DE+ G
Sbjct: 1453 NIKGEGAHQTHEPDEEEG 1470
Score = 37 (18.1 bits), Expect = 7.1e-56, Sum P(4) = 7.1e-56
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 1099 AIYYDPDPQNTVIPEDQEFVNVYYEMPD 1126
A+ + QN PE Q+ + +++E+ +
Sbjct: 1109 ALNLEGKTQNGRSPETQQMLQMWHELDE 1136
>UNIPROTKB|G3V7B7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CH473957
GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 UniGene:Rn.24877
Ensembl:ENSRNOT00000013587 Uniprot:G3V7B7
Length = 1716
Score = 427 (155.4 bits), Expect = 7.1e-56, Sum P(4) = 7.1e-56
Identities = 131/411 (31%), Positives = 196/411 (47%)
Query: 65 MHGSARNQEQMMNILMFLPIWD--G--KMPQPCILKPKPLWTGKQVFSL----IIPGN-- 114
+ G +EQ M L++ + D G K+ P ILKP PLWTGKQV S IIP +
Sbjct: 650 IRGCFFTREQYME-LVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYT 708
Query: 115 -VNMT---RTHSTHPDDEDSGPYQWISPG---DTKVVVEHGSLLMGIXXXXXXXXXXXXX 167
+N+T + S E P P +++V++ G LL G+
Sbjct: 709 PLNLTGKAKIGSKAWVKEKPRPVPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 768
Query: 168 XHICFLELGHEVCGRFYGNIQTVVNNWL-LLEGHSIGIGDTIADPQTYLEIQMAIKKAKE 226
H C+ G E GR + + +L L G ++G+ D + P + Q I+++ +
Sbjct: 769 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVMRQRIIEESTQ 828
Query: 227 DVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 286
++ A N+ P D EIQ K Q AH +
Sbjct: 829 CGPRAVRAALNL---PEAAS--------CD-----EIQ-----GKW------QDAH-LGK 860
Query: 287 EPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVI 346
+ N + F+ +VN N+ NNL+ MV +G+KGS +N Q+
Sbjct: 861 DQRDFNMIDMKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQIS 920
Query: 347 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 406
+GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M GRE
Sbjct: 921 CLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGRE 980
Query: 407 GLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
GL+DTAVKT+ +GY+QR +IK +E +++ YD TVR+S G ++Q YGEDGL
Sbjct: 981 GLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGL 1031
Score = 204 (76.9 bits), Expect = 7.1e-56, Sum P(4) = 7.1e-56
Identities = 58/224 (25%), Positives = 110/224 (49%)
Query: 1177 AEKLVLRIRIMNSDDSKMQDEE-DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMH 1235
AE + RI+ + S ++D + D + + + ++ + DM+ + ++
Sbjct: 1491 AEAMERRIQAVRESHSFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVSLAHNAIVY 1550
Query: 1236 LPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVL 1294
T R ++ E+ K +++L T+G +L ++ +V D R +SNDI +
Sbjct: 1551 T--TKGITRCLLNETINSKNEKEFVLNTEGINLPELFKYSEVLDLRRLYSNDIHAVANTY 1608
Query: 1295 GIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1354
GIEA + +EKE+ V YG+ V+ RHL+L+ D M +G + R GI + + L +
Sbjct: 1609 GIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-QSSSSPLQQ 1667
Query: 1355 CSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1398
+FE + L A D ++ S +++G++ + GTG F+L
Sbjct: 1668 MTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFEL 1711
Score = 180 (68.4 bits), Expect = 1.3e-22, Sum P(4) = 1.3e-22
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 1012 IACV-GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 1070
I+C+ GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M G
Sbjct: 919 ISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAG 978
Query: 1071 REGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
REGL+DTAVKT+ + + + + I YD
Sbjct: 979 REGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYD 1011
Score = 142 (55.0 bits), Expect = 7.2e-51, Sum P(3) = 7.2e-51
Identities = 37/143 (25%), Positives = 70/143 (48%)
Query: 739 FSSGESNVVLPCNLMEVIFILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYG 798
F + LP L + +L +L+ N+ + + + + + +EKE+ V YG
Sbjct: 1572 FVLNTEGINLP-ELFKYSEVLDLRRLYSND-IHAVANTYGIEAALRVIEKEIKDVFAVYG 1629
Query: 799 LYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADP 858
+ V+ RHL+L+ D M +G + R GI + + L + +FE + L A D
Sbjct: 1630 IAVDPRHLSLVADYMCFEGVYKPLNRFGI-QSSSSPLQQMTFETSFQFLKQATMMGSHDE 1688
Query: 859 MRGVSENIIMGQLPRMGTGCFDL 881
++ S +++G++ + GTG F+L
Sbjct: 1689 LKSPSACLVVGKVVKGGTGLFEL 1711
Score = 118 (46.6 bits), Expect = 7.1e-56, Sum P(4) = 7.1e-56
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR +IK +E +++ YD TVR+S G ++Q YGEDGL
Sbjct: 993 GYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGL 1031
Score = 100 (40.3 bits), Expect = 8.6e-40, Sum P(2) = 8.6e-40
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 514 LTSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 573
L +EKE+ V YG+ V+ RHL+L+ D M +G + R GI + + L + +FE
Sbjct: 1614 LRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-QSSSSPLQQMTFET 1672
Query: 574 TVDVLMDAAAHAEADPMR 591
+ L A D ++
Sbjct: 1673 SFQFLKQATMMGSHDELK 1690
Score = 50 (22.7 bits), Expect = 1.3e-22, Sum P(4) = 1.3e-22
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 299 ENQVNRILNDARDKTGGSAKKSLTEYNN-LKAMVVAGSKGSNI-NI----SQVIACVGQQ 352
E ++R L + D + ++ L EY + + + GS+G+++ N+ S+++A +
Sbjct: 139 ERILSRFLEETSDPSAFEIQEELEEYTSKILQNNLLGSQGAHVKNVCESRSKLVAHFWKT 198
Query: 353 NVEGKRIP 360
++ KR P
Sbjct: 199 HMAAKRCP 206
Score = 41 (19.5 bits), Expect = 2.5e-40, Sum P(3) = 2.5e-40
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 1528 FLDKVTANT-AIYYDPDPQNTVIPEDQEFVNVYYEMPD 1564
F K+ A A+ + QN PE Q+ + +++E+ +
Sbjct: 1099 FSQKIQAAVKALNLEGKTQNGRSPETQQMLQMWHELDE 1136
Score = 41 (19.5 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 114 NVNMTRTHSTHPDDEDSG 131
N+ H TH DE+ G
Sbjct: 1453 NIKGEGAHQTHEPDEEEG 1470
Score = 37 (18.1 bits), Expect = 7.1e-56, Sum P(4) = 7.1e-56
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 1099 AIYYDPDPQNTVIPEDQEFVNVYYEMPD 1126
A+ + QN PE Q+ + +++E+ +
Sbjct: 1109 ALNLEGKTQNGRSPETQQMLQMWHELDE 1136
>MGI|MGI:1096397 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009303 "rRNA transcription" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] Reactome:REACT_78136 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 MGI:MGI:1096397 GO:GO:0005654 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086
CleanEx:MM_RPA1 Reactome:REACT_86751 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 CTD:25885 HOGENOM:HOG000205401
HOVERGEN:HBG017741 OrthoDB:EOG41VK23 ChiTaRS:POLR1A EMBL:AF000938
EMBL:BC053744 IPI:IPI00313726 PIR:T13961 RefSeq:NP_033114.3
UniGene:Mm.135581 ProteinModelPortal:O35134 SMR:O35134
STRING:O35134 PhosphoSite:O35134 PaxDb:O35134 PRIDE:O35134
Ensembl:ENSMUST00000055296 GeneID:20019 KEGG:mmu:20019
UCSC:uc009chv.2 GeneTree:ENSGT00550000074861 InParanoid:O35134
NextBio:297531 Bgee:O35134 Genevestigator:O35134
GermOnline:ENSMUSG00000049553 Uniprot:O35134
Length = 1717
Score = 425 (154.7 bits), Expect = 1.2e-55, Sum P(4) = 1.2e-55
Identities = 130/411 (31%), Positives = 197/411 (47%)
Query: 65 MHGSARNQEQMMNILMFLPIWD--G--KMPQPCILKPKPLWTGKQVFSL----IIPGN-- 114
+ G +EQ M L++ + D G K+ P ILKP PLWTGKQV S IIP +
Sbjct: 650 IRGCFFTREQYME-LVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYA 708
Query: 115 -VNMT---RTHSTHPDDEDSGPYQWISPG---DTKVVVEHGSLLMGIXXXXXXXXXXXXX 167
+N++ + S E P P +++V++ G LL G+
Sbjct: 709 PLNLSGKAKIGSKAWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 768
Query: 168 XHICFLELGHEVCGRFYGNIQTVVNNWL-LLEGHSIGIGDTIADPQTYLEIQMAIKKAKE 226
H C+ G E GR + + +L L G ++G+ D + P + Q I+++ +
Sbjct: 769 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQ 828
Query: 227 DVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 286
+ ++ A + L T D EIQ K Q AH +
Sbjct: 829 CGPQAVKAA--LSLPETAS---------CD-----EIQ-----GKW------QDAH-LSK 860
Query: 287 EPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVI 346
+ N + F+ +VN N+ NNL+ MV +G+KGS +N Q+
Sbjct: 861 DQRDFNMIDMKFKEEVNHYSNEINKACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQIS 920
Query: 347 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 406
+GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M GRE
Sbjct: 921 CLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGRE 980
Query: 407 GLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
GL+DTAVKT+ +GY+QR +IK +E +++ YD TVR+S G ++Q YGEDGL
Sbjct: 981 GLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGL 1031
Score = 203 (76.5 bits), Expect = 1.2e-55, Sum P(4) = 1.2e-55
Identities = 58/224 (25%), Positives = 110/224 (49%)
Query: 1177 AEKLVLRIRIMNSDDSKMQDEE-DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMH 1235
AE + RI+ + S ++D + D + + + ++ + DM+ + K ++
Sbjct: 1492 AEAIKRRIQAVRESYSFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVSLAHKAIVY 1551
Query: 1236 LPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVL 1294
T R ++ E+ K + +L T+G +L ++ ++ D R +SNDI +
Sbjct: 1552 T--TKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYSEILDLRRLYSNDIHAMANTY 1609
Query: 1295 GIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1354
GIEA + +EKE+ V YG+ V+ RHL+L+ D M +G + R GI + + L +
Sbjct: 1610 GIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-QSSSSPLQQ 1668
Query: 1355 CSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1398
+FE + L A D ++ S +++G++ + GTG F+L
Sbjct: 1669 MTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFEL 1712
Score = 180 (68.4 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 1012 IACV-GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 1070
I+C+ GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M G
Sbjct: 919 ISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAG 978
Query: 1071 REGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
REGL+DTAVKT+ + + + + I YD
Sbjct: 979 REGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYD 1011
Score = 144 (55.7 bits), Expect = 7.3e-51, Sum P(3) = 7.3e-51
Identities = 39/146 (26%), Positives = 74/146 (50%)
Query: 736 REIFSSGESNVVLPCNLMEVIFILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQ 795
+E+ + E + LP L + IL +L+ N+ + + + + + +EKE+ V
Sbjct: 1571 KELVLNTEG-INLP-ELFKYSEILDLRRLYSND-IHAMANTYGIEAALRVIEKEIKDVFA 1627
Query: 796 FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE 855
YG+ V+ RHL+L+ D M +G + R GI + + L + +FE + L A
Sbjct: 1628 VYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-QSSSSPLQQMTFETSFQFLKQATMMGS 1686
Query: 856 ADPMRGVSENIIMGQLPRMGTGCFDL 881
D ++ S +++G++ + GTG F+L
Sbjct: 1687 HDELKSPSACLVVGKVVKGGTGLFEL 1712
Score = 118 (46.6 bits), Expect = 1.2e-55, Sum P(4) = 1.2e-55
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR +IK +E +++ YD TVR+S G ++Q YGEDGL
Sbjct: 993 GYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGL 1031
Score = 100 (40.3 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 514 LTSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 573
L +EKE+ V YG+ V+ RHL+L+ D M +G + R GI + + L + +FE
Sbjct: 1615 LRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-QSSSSPLQQMTFET 1673
Query: 574 TVDVLMDAAAHAEADPMR 591
+ L A D ++
Sbjct: 1674 SFQFLKQATMMGSHDELK 1691
Score = 42 (19.8 bits), Expect = 4.3e-39, Sum P(4) = 4.3e-39
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 1616 KLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMF 1675
KL MEAI +K N F + N+ + + D + Q EE+ ++ E ++
Sbjct: 1355 KLLMEAIKKKKNKASA------FRNVNSRRATQKDLNDTEDSGRSQREEERDEEEEGNIV 1408
Query: 1676 LRCIEETD 1683
EE D
Sbjct: 1409 DAEAEEGD 1416
Score = 40 (19.1 bits), Expect = 8.8e-39, Sum P(4) = 8.8e-39
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 1150 KLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMED 1206
KL MEAI +K N F + N+ + + + +++DS E+ D+ E+
Sbjct: 1355 KLLMEAIKKKKNKASA------FRNVNSRRATQK-DLNDTEDSGRSQREEERDEEEE 1404
Score = 39 (18.8 bits), Expect = 4.3e-39, Sum P(4) = 4.3e-39
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 1528 FLDKVTANT-AIYYDPDPQNTVIPEDQEFVNVYYEMPD 1564
F K+ A A+ QN PE Q+ + ++Y++ +
Sbjct: 1099 FSQKIQAAVKALNLKGSIQNGRSPETQQMLQMWYDLDE 1136
Score = 38 (18.4 bits), Expect = 1.2e-55, Sum P(4) = 1.2e-55
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 1107 QNTVIPEDQEFVNVYYEMPD 1126
QN PE Q+ + ++Y++ +
Sbjct: 1117 QNGRSPETQQMLQMWYDLDE 1136
Score = 38 (18.4 bits), Expect = 4.3e-38, Sum P(5) = 4.3e-38
Identities = 34/129 (26%), Positives = 50/129 (38%)
Query: 1479 GFGLLTLTLMV----ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTA 1534
G G + +TL + E + V I TP + PV DT A++K+ L +V
Sbjct: 1242 GRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF----DTKKALKKVKSLKKRLTRVCL 1297
Query: 1535 NTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRI--SPWLLRIELDRKRMTDK--KLT 1590
+ ++ + E + VY F P LR E M + KL
Sbjct: 1298 GEVLQKVDIQESFCMGEKRNKFQVYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLL 1357
Query: 1591 MEAISEKIN 1599
MEAI +K N
Sbjct: 1358 MEAIKKKKN 1366
>WB|WBGene00012999 [details] [associations]
symbol:rpoa-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
HSSP:P04050 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:Z83219 EMBL:AL032648 EMBL:Z93392
PIR:A88355 PIR:T19606 RefSeq:NP_001022450.1
ProteinModelPortal:G5ED21 SMR:G5ED21 PRIDE:G5ED21
EnsemblMetazoa:Y48E1A.1a GeneID:175015 KEGG:cel:CELE_Y48E1A.1
CTD:175015 WormBase:Y48E1A.1a NextBio:886412 Uniprot:G5ED21
Length = 1737
Score = 361 (132.1 bits), Expect = 6.4e-54, Sum P(5) = 6.4e-54
Identities = 67/133 (50%), Positives = 91/133 (68%)
Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFV 384
N L+ M+ +G+KGS +N Q+ C+GQ +EGKR+ RTLP F D P + G++
Sbjct: 928 NALQLMIQSGAKGSAVNAIQISGCLGQIELEGKRMAVTIAGRTLPSFRCFDPSPRAGGYI 987
Query: 385 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSV 444
+ +L G+ P E FFH M GREGLIDTAVKT+ +GY+QR +IK +E + VHYD TVR+
Sbjct: 988 DQRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDHD 1047
Query: 445 GQLIQLRYGEDGL 457
G +IQ RYGEDG+
Sbjct: 1048 GSVIQFRYGEDGM 1060
Score = 255 (94.8 bits), Expect = 6.4e-54, Sum P(5) = 6.4e-54
Identities = 62/168 (36%), Positives = 88/168 (52%)
Query: 1238 QTDSKKRII-ITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT-FSNDICEIFQVLG 1295
QT +R + TE K + +L+T G +L DV V + +SND+ I + G
Sbjct: 1551 QTPGIERCVETTEQKNGKEMT--ILQTQGVNLAAFFKHADVLDVNSVYSNDLNLILENYG 1608
Query: 1296 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1355
+EA K++ EMN V YG+ V+ RHL+L D MT G + R G + L +
Sbjct: 1609 VEACSKAITTEMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNR-GAMSSSSSPLQKM 1667
Query: 1356 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1403
+FE T+ L +A H E D + S ++MG LPR GTG FDLLLD +
Sbjct: 1668 TFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGGTGSFDLLLDTK 1715
Score = 202 (76.2 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 44/122 (36%), Positives = 64/122 (52%)
Query: 1010 QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 1069
Q+ C+GQ +EGKR+ RTLP F D P + G+++ +L G+ P E FFH M
Sbjct: 947 QISGCLGQIELEGKRMAVTIAGRTLPSFRCFDPSPRAGGYIDQRFLTGMNPQELFFHTMA 1006
Query: 1070 GREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDP 1129
GREGLIDTAVKT+ + + + + ++YD +TV D + Y D
Sbjct: 1007 GREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYD----STVRDHDGSVIQFRYGEDGMDT 1062
Query: 1130 TR 1131
T+
Sbjct: 1063 TK 1064
Score = 199 (75.1 bits), Expect = 4.7e-49, Sum P(4) = 4.7e-49
Identities = 44/120 (36%), Positives = 64/120 (53%)
Query: 767 NENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHG 826
+ +L + + V + K++ EMN V YG+ V+ RHL+L D MT G + R G
Sbjct: 1597 SNDLNLILENYGVEACSKAITTEMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNR-G 1655
Query: 827 INRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 886
+ L + +FE T+ L +A H E D + S ++MG LPR GTG FDLLLD +
Sbjct: 1656 AMSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGGTGSFDLLLDTK 1715
Score = 128 (50.1 bits), Expect = 1.2e-29, Sum P(5) = 1.2e-29
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR +IK +E + VHYD TVR+ G +IQ RYGEDG+
Sbjct: 1022 GYLQRCIIKHLEGIRVHYDSTVRDHDGSVIQFRYGEDGM 1060
Score = 125 (49.1 bits), Expect = 6.4e-54, Sum P(5) = 6.4e-54
Identities = 41/168 (24%), Positives = 70/168 (41%)
Query: 88 KMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQ-WISPG------- 139
++P P IL PK LWTGKQV + I+ + + + D + P WI PG
Sbjct: 708 EIPPPTILYPKRLWTGKQVITTIVKNCIPDGKP-LINLDGKAKTPLSCWIVPGFDAPQFD 766
Query: 140 --DTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCG-RFYGNIQTVVNNWLL 196
++ VV G LL+G+ H F GH CG + + +L
Sbjct: 767 MSESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHR-CGVQLLSCFSRLFTTYLQ 825
Query: 197 LEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTP 244
G ++G+ D + + + A+ +++ +V++ A + TP
Sbjct: 826 FHGFTLGVADILVVKDADGKRKEAVMESRTIGNQVVKTAFGLPDTATP 873
Score = 120 (47.3 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 28/87 (32%), Positives = 43/87 (49%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++ EMN V YG+ V+ RHL+L D MT G + R G + L + +FE T+
Sbjct: 1615 AITTEMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNR-GAMSSSSSPLQKMTFETTM 1673
Query: 576 DVLMDAAAHAEADPMRGYIQRRLIKAM 602
L +A H E D + R ++ A+
Sbjct: 1674 AFLREALLHGEEDNVNSPSARLVMGAL 1700
Score = 47 (21.6 bits), Expect = 6.6e-46, Sum P(5) = 6.6e-46
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 103 GKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEHGSLLM 152
GK ++II G+ ST D+E G GD V ++ GSL M
Sbjct: 247 GKSKKAIIIIGDNGYNEESSTDEDEEKKGGGGAEVTGDV-VDLDEGSLEM 295
Score = 42 (19.8 bits), Expect = 3.1e-32, Sum P(5) = 3.1e-32
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 1577 IELDRKRM--TDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDL 1634
IE+ ++ + T +T + N G ++PL + TM + E + G D++
Sbjct: 1629 IEVSKRHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQKMTFETTMAFLREALLHGEEDNV 1688
Query: 1635 N 1635
N
Sbjct: 1689 N 1689
Score = 41 (19.5 bits), Expect = 3.1e-32, Sum P(5) = 3.1e-32
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 769 NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGL 799
NL K VL V ++N +L+ YG+
Sbjct: 1579 NLAAFFKHADVLDVNSVYSNDLNLILENYGV 1609
Score = 41 (19.5 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 1153 MEAI-SEKI-NAG-FGDDLNCIFNDDNA 1177
+E+I +KI NA FGDD + FND +A
Sbjct: 143 LESILRDKIANADLFGDDDSKTFNDVDA 170
Score = 40 (19.1 bits), Expect = 6.4e-54, Sum P(5) = 6.4e-54
Identities = 4/22 (18%), Positives = 16/22 (72%)
Query: 774 CKIIFVLSVRKSVEKEMNTVLQ 795
C+++F L +R + +++++++
Sbjct: 1520 CEVVFELPLRNKTKMDVSSIVE 1541
Score = 38 (18.4 bits), Expect = 6.4e-54, Sum P(5) = 6.4e-54
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 626 GEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERQLRRIFNEDVLRELMGSGDVISE 685
G + EA H+R ++ ED+ R + E + +EDV +E + D +E
Sbjct: 1430 GREADAAEARLHRRHRDEGADYEG-EDEERVEVREEEEPMDSDSEDVKKEGLDGEDQTTE 1488
Score = 37 (18.1 bits), Expect = 1.2e-31, Sum P(5) = 1.2e-31
Identities = 20/86 (23%), Positives = 38/86 (44%)
Query: 1598 INAGFGDDLNTPLSPTDKKLTMEAISEKIN---AGFGDDLNCIFNDDNAEKLVLRIRIMN 1654
+N+ + +DLN L + +AI+ ++N A +G +++ A+ + +I
Sbjct: 1592 VNSVYSNDLNLILENYGVEACSKAITTEMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQP 1651
Query: 1655 SDDSKMQDEEDAVDKM--EDDM-FLR 1677
+ M + KM E M FLR
Sbjct: 1652 FNRGAMSSSSSPLQKMTFETTMAFLR 1677
Score = 37 (18.1 bits), Expect = 9.2e-13, Sum P(5) = 9.2e-13
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 215 LEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
L + AIKK ++ + Q +H + I G T
Sbjct: 1371 LRVAQAIKKKYHEITDYQQMSHRTMRQGNMAAGIETGGT 1409
>DICTYBASE|DDB_G0275759 [details] [associations]
symbol:rpa1 "RNA polymerase I, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0275759 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR EMBL:AAFI02000013 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 RefSeq:XP_643519.1 HSSP:P04050
ProteinModelPortal:Q86H36 STRING:Q86H36 PRIDE:Q86H36
EnsemblProtists:DDB0216292 GeneID:8620100 KEGG:ddi:DDB_G0275759
KO:K02999 OMA:CLLNETT ProtClustDB:CLSZ2497252
PANTHER:PTHR19376:SF11 Uniprot:Q86H36
Length = 1615
Score = 372 (136.0 bits), Expect = 2.5e-53, Sum P(3) = 2.5e-53
Identities = 80/195 (41%), Positives = 116/195 (59%)
Query: 315 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 374
G +K + NN M V+G+KGS +N SQV +GQQ +EGKR+P +TLP F
Sbjct: 877 GGQQKPFPK-NNFSLMTVSGAKGSVVNFSQVSCLLGQQELEGKRVPRMVSGKTLPSFQAY 935
Query: 375 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 434
D + GFV + +L G+ P ++FFH M GREGLIDTAVKT+ +GY+QR LIK +E + V
Sbjct: 936 DASARAGGFVMDRFLTGVRPQDYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSV 995
Query: 435 HYDCTVRNSVGQLIQLRYGEDGL-CGEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLR 493
YD TVR S G +IQ YGED L G+ + +A +++ F+ ++ + E+ +
Sbjct: 996 QYDNTVRESDGSVIQFNYGEDSLEIGKTPYLTKFPIIAENYELFKSQFPMEQLIEQLKNQ 1055
Query: 494 NVSSLRRVVNSKPLL 508
V R + ++P L
Sbjct: 1056 EVVEYNRSIKTQPEL 1070
Score = 214 (80.4 bits), Expect = 2.5e-53, Sum P(3) = 2.5e-53
Identities = 49/142 (34%), Positives = 80/142 (56%)
Query: 1261 LETDGTSLMKVLSERD---VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1317
++++G +L ++ RD +D + ++NDI I Q G+EA R++V E++ V YG+
Sbjct: 1473 IQSEGVNLSEIFELRDKLKIDEI--YTNDIYAILQKYGVEACRQAVTSEISNVFAAYGIS 1530
Query: 1318 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1377
V+ RHL LL D MT +G A+ R GI +T + SFE T L A+ + D +
Sbjct: 1531 VDKRHLILLGDYMTFEGGYRALNRIGIEN-NTSPFQKMSFETTFSFLSKASLMGDYDTVT 1589
Query: 1378 GVSENIIMGQLPRMGTGCFDLL 1399
S I++GQ+ + GTG F ++
Sbjct: 1590 SPSSRIVLGQIVKNGTGSFTIV 1611
Score = 205 (77.2 bits), Expect = 1.7e-35, Sum P(3) = 1.7e-35
Identities = 50/154 (32%), Positives = 80/154 (51%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+QV +GQQ +EGKR+P +TLP F D + GFV + +L G+ P ++FFH M
Sbjct: 904 SQVSCLLGQQELEGKRVPRMVSGKTLPSFQAYDASARAGGFVMDRFLTGVRPQDYFFHCM 963
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
GREGLIDTAVKT+ + + L + ++ YD NTV D + Y +
Sbjct: 964 AGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVQYD----NTVRESDGSVIQFNYGEDSLE 1019
Query: 1129 PTRISPWLLRIEL--DRKRMTDKKLTMEAISEKI 1160
+ +P+L + + + + + ME + E++
Sbjct: 1020 IGK-TPYLTKFPIIAENYELFKSQFPMEQLIEQL 1052
Score = 163 (62.4 bits), Expect = 5.3e-48, Sum P(3) = 5.3e-48
Identities = 44/135 (32%), Positives = 70/135 (51%)
Query: 751 NLMEVIFILQRWKL---WGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLA 807
NL E+ + + K+ + N+ L K V + R++V E++ V YG+ V+ RHL
Sbjct: 1479 NLSEIFELRDKLKIDEIYTNDIYAILQKY-GVEACRQAVTSEISNVFAAYGISVDKRHLI 1537
Query: 808 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 867
LL D MT +G A+ R GI +T + SFE T L A+ + D + S I+
Sbjct: 1538 LLGDYMTFEGGYRALNRIGIEN-NTSPFQKMSFETTFSFLSKASLMGDYDTVTSPSSRIV 1596
Query: 868 MGQLPRMGTGCFDLL 882
+GQ+ + GTG F ++
Sbjct: 1597 LGQIVKNGTGSFTIV 1611
Score = 125 (49.1 bits), Expect = 2.5e-53, Sum P(3) = 2.5e-53
Identities = 36/151 (23%), Positives = 61/151 (40%)
Query: 90 PQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPG-----DTKVV 144
P PCILKP PLW+GKQ+ S + + + R W + G D+ V+
Sbjct: 678 PPPCILKPVPLWSGKQLISAAL-NQLTIGRAPLNLEAPSKIPTKMWGTKGLEITRDSHVI 736
Query: 145 VEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGI 204
+ ++ GI H C+ +V G + + N+L G + G+
Sbjct: 737 IRQNEMVAGILDKGHFGASSYGLVHTCYELYDPDVAGSLLTLLGRMFTNYLQSRGFTCGV 796
Query: 205 GDTIA-DPQTYLEIQMAIKKAKEDVIEVIQK 234
D + + + ++ +KKA E+ V K
Sbjct: 797 DDLLMKNKEEKFRVE-TLKKANEEGYTVAAK 826
Score = 124 (48.7 bits), Expect = 4.3e-27, Sum P(3) = 4.3e-27
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL-CGEAVEHQRIDTVALSHKKF 650
GY+QR LIK +E + V YD TVR S G +IQ YGED L G+ + +A +++ F
Sbjct: 980 GYLQRCLIKHLEGLSVQYDNTVRESDGSVIQFNYGEDSLEIGKTPYLTKFPIIAENYELF 1039
Query: 651 EDKYRFDPSNERQLRRIFNEDVL 673
+ ++ P E+ + ++ N++V+
Sbjct: 1040 KSQF---PM-EQLIEQLKNQEVV 1058
Score = 107 (42.7 bits), Expect = 3.7e-42, Sum P(3) = 3.7e-42
Identities = 27/73 (36%), Positives = 38/73 (52%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
+V E++ V YG+ V+ RHL LL D MT +G A+ R GI +T + SFE T
Sbjct: 1515 AVTSEISNVFAAYGISVDKRHLILLGDYMTFEGGYRALNRIGIEN-NTSPFQKMSFETTF 1573
Query: 576 DVLMDAAAHAEAD 588
L A+ + D
Sbjct: 1574 SFLSKASLMGDYD 1586
Score = 43 (20.2 bits), Expect = 9.6e-19, Sum P(3) = 9.6e-19
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 983 LVAENYRLSSEAF--EWLVGEIENR 1005
++AENY L F E L+ +++N+
Sbjct: 1031 IIAENYELFKSQFPMEQLIEQLKNQ 1055
Score = 38 (18.4 bits), Expect = 5.5e-35, Sum P(3) = 5.5e-35
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 1600 AGFGDDLNTPLS-PTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD 1657
AG G+ N L P ++L M A ++ I +N N EK+ + I+ D
Sbjct: 1163 AGRGE-ANVTLGIPRLRELIMTATTKPITPLMEFQINDSTNKVETEKMAKYLEILKLSD 1220
Score = 38 (18.4 bits), Expect = 3.1e-18, Sum P(3) = 3.1e-18
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 477 FEDKYR-FDPSNER-PTLRNVSSLRRV 501
F+D R +D E PTL+ V SL R+
Sbjct: 1231 FQDTNRNYDIEIEFIPTLQQVLSLHRI 1257
>FB|FBgn0019938 [details] [associations]
symbol:RpI1 "RNA polymerase I subunit" species:7227
"Drosophila melanogaster" [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:AE013599 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 EMBL:Y09103 EMBL:AY121632 PIR:T13803
RefSeq:NP_523743.1 UniGene:Dm.8031 ProteinModelPortal:P91875
SMR:P91875 MINT:MINT-1742038 STRING:P91875 PaxDb:P91875
GeneID:36617 KEGG:dme:Dmel_CG10122 CTD:36617 FlyBase:FBgn0019938
InParanoid:P91875 OrthoDB:EOG466T1R GenomeRNAi:36617 NextBio:799515
Bgee:P91875 GermOnline:CG10122 Uniprot:P91875
Length = 1642
Score = 401 (146.2 bits), Expect = 3.8e-50, Sum P(3) = 3.8e-50
Identities = 123/391 (31%), Positives = 201/391 (51%)
Query: 86 DGKMPQPCILKPKPLWTGKQVFSLII----P-G--NVNMTRTHSTHPDDED-SGPYQWI- 136
D K+ P ILKP LW+GKQ+ S II P G +N+ + + S P I
Sbjct: 644 DIKLLPPTILKPAVLWSGKQILSTIIINIIPEGYERINLDSFAKIAGKNWNVSRPRPPIC 703
Query: 137 --SP-----GDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLEL-GHEVCGRFYGNIQ 188
+P +++V + +G LL+G+ H C EL G +V
Sbjct: 704 GTNPEGNDLSESQVQIRNGELLVGVLDKQQYGATTYGLIH-CMYELYGGDVSTLLLTAFT 762
Query: 189 TVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSI 248
V +L LEG ++G+ D + +A +K ++ +I++ N+ G+S
Sbjct: 763 KVFTFFLQLEGFTLGVKDILVT-------DVADRKRRK----IIRECRNV------GNS- 804
Query: 249 GIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILND 308
+A LE++ + ++++E ++ A+ D + L + +++ ++ ND
Sbjct: 805 ----AVA---AALELED--EPPHDELVEKMEAAYVKDSKFRV--LLDRKYKSLLDGYTND 853
Query: 309 ARDKTGGSAKKSLTEY--NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
+ +T++ NNL+ MV++G+KGS +N Q+ +GQ +EGKR P +
Sbjct: 854 INSTC--LPRGLITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGK 911
Query: 367 TLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLI 426
+LP F + P+S GF++ ++ G+ P +FFFH M GREGLIDTAVKT+ +GY+QR LI
Sbjct: 912 SLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLI 971
Query: 427 KAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
K +E + VHYD TVR+S ++Q YGEDGL
Sbjct: 972 KHLEGLSVHYDLTVRDSDNSVVQFLYGEDGL 1002
Score = 236 (88.1 bits), Expect = 3.8e-50, Sum P(3) = 3.8e-50
Identities = 62/181 (34%), Positives = 95/181 (52%)
Query: 1220 DMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV-D 1278
D+T E GK +H Q KR II + + D LL+TDG ++ ++ + D
Sbjct: 1465 DLTSIIRELAGKSVVH--QVQHIKRAIIYKGND----DDQLLKTDGINIGEMFQHNKILD 1518
Query: 1279 PVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMA 1338
R +SNDI I + GIEA + + KE++ V + YG+ V+ RHL+L+ D MT G
Sbjct: 1519 LNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQP 1578
Query: 1339 ITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1398
++R G+ + L + SFE ++ L AA AD + S +++G R GTG F+L
Sbjct: 1579 LSRKGMEHSSS-PLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFEL 1637
Query: 1399 L 1399
L
Sbjct: 1638 L 1638
Score = 211 (79.3 bits), Expect = 6.5e-30, Sum P(3) = 6.5e-30
Identities = 52/143 (36%), Positives = 77/143 (53%)
Query: 973 CLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVIACV-GQQNVEGKRIPFGFRK 1031
CL R L TK + N +L G + N Q I+C+ GQ +EGKR P
Sbjct: 858 CLPRG-LITKFPSNNLQLM--VLSGAKGSMVNTMQ----ISCLLGQIELEGKRPPLMISG 910
Query: 1032 RTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFL 1091
++LP F + P+S GF++ ++ G+ P +FFFH M GREGLIDTAVKT+ + + L
Sbjct: 911 KSLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCL 970
Query: 1092 FQVTANTAIYYD---PDPQNTVI 1111
+ +++YD D N+V+
Sbjct: 971 IKHLEGLSVHYDLTVRDSDNSVV 993
Score = 165 (63.1 bits), Expect = 6.8e-44, Sum P(2) = 6.8e-44
Identities = 38/125 (30%), Positives = 67/125 (53%)
Query: 758 ILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 817
IL +L+ N+ + + + + + + + KE++ V + YG+ V+ RHL+L+ D MT G
Sbjct: 1516 ILDLNRLYSND-IHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDG 1574
Query: 818 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 877
++R G+ + L + SFE ++ L AA AD + S +++G R GTG
Sbjct: 1575 TFQPLSRKGMEHSSS-PLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTG 1633
Query: 878 CFDLL 882
F+LL
Sbjct: 1634 AFELL 1638
Score = 121 (47.7 bits), Expect = 1.3e-20, Sum P(3) = 1.3e-20
Identities = 23/39 (58%), Positives = 29/39 (74%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR LIK +E + VHYD TVR+S ++Q YGEDGL
Sbjct: 964 GYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGL 1002
Score = 120 (47.3 bits), Expect = 3.6e-39, Sum P(2) = 3.6e-39
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 517 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 576
+ KE++ V + YG+ V+ RHL+L+ D MT G ++R G+ + L + SFE ++
Sbjct: 1543 IVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSS-PLQQMSFESSLQ 1601
Query: 577 VLMDAAAHAEADPMRGYIQRRLI 599
L AA AD + R ++
Sbjct: 1602 FLKSAAGFGRADELSSPSSRLMV 1624
Score = 43 (20.2 bits), Expect = 3.8e-50, Sum P(3) = 3.8e-50
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 1188 NSDDSKMQDEED---AVDKMEDDMFLRCIEANMLSDM 1221
N DD + +DE+D D ++D + +E + +DM
Sbjct: 1401 NDDDDEAEDEDDEEKGQDGNDNDGDDKAVERLLSNDM 1437
Score = 43 (20.2 bits), Expect = 3.8e-50, Sum P(3) = 3.8e-50
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 1166 DDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMED 1206
DD + +DD+A + L+ R D K D+ D V+++ D
Sbjct: 1362 DDSSDDNDDDDATGVKLKQR---KTDEKDYDDPDDVEELHD 1399
Score = 43 (20.2 bits), Expect = 4.3e-31, Sum P(2) = 4.3e-31
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 1632 DDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMED 1672
DD + +DD+A + L+ R D K D+ D V+++ D
Sbjct: 1362 DDSSDDNDDDDATGVKLKQR---KTDEKDYDDPDDVEELHD 1399
Score = 42 (19.8 bits), Expect = 5.9e-30, Sum P(3) = 5.9e-30
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 1654 NSDDSKMQDEEDAVDKMEDDMFLRCIEETDRSFVKVDFVEPKDLVEWKTLLKQMH 1708
N DD + +DE+D +K +D + D V+ + D+V+ T K+ H
Sbjct: 1401 NDDDDEAEDEDDE-EKGQDG------NDNDGDDKAVERLLSNDMVKAYTYDKENH 1448
>POMBASE|SPBC4C3.05c [details] [associations]
symbol:nuc1 "DNA-directed RNA polymerase I complex large
subunit Nuc1" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IGI] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISO] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0007000 "nucleolus organization" evidence=IMP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 PomBase:SPBC4C3.05c
GO:GO:0005829 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0034503 GO:GO:0006360
GO:GO:0007000 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999
OMA:CLLNETT PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 EMBL:X14783
EMBL:M37411 PIR:JS0080 RefSeq:NP_596300.1 ProteinModelPortal:P15398
STRING:P15398 EnsemblFungi:SPBC4C3.05c.1 GeneID:2540873
KEGG:spo:SPBC4C3.05c OrthoDB:EOG432464 NextBio:20801989
Uniprot:P15398
Length = 1689
Score = 383 (139.9 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 74/184 (40%), Positives = 113/184 (61%)
Query: 324 YNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF 383
YN+++ M V+G+KGSN+N+SQ+ +GQQ +EG+R+P ++LP F+ + +S GF
Sbjct: 935 YNHMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGF 994
Query: 384 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNS 443
+ + +L G+ P E++FH M GREGLIDTAVKT+ +GY+QR L+K +E + V YD TVR+S
Sbjct: 995 IASRFLTGIAPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDS 1054
Query: 444 VGQLIQLRYGEDGLCGEAVEH-QRIDTVALSHKKFEDKYRFDPSNERPTLRNVSSLRRVV 502
G ++Q YGED L +H + + A ++K KY+ SS +
Sbjct: 1055 DGSIVQFHYGEDSLDVTKQKHLTQFEFSAKNYKSLIQKYKVKSVLSAVDSETASSYAKKA 1114
Query: 503 NSKP 506
KP
Sbjct: 1115 LKKP 1118
Score = 210 (79.0 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 46/138 (33%), Positives = 77/138 (55%)
Query: 1263 TDGTSLMKVLSE--RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1320
T+G +L K + E ++ ++NDI I ++ G+EA R ++ E+++V YG+ V+
Sbjct: 1544 TEGVNL-KAIWEFYNEISMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDP 1602
Query: 1321 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1380
RHL+L+ D MT +G A R GI +T + SFE T L +AA + D + S
Sbjct: 1603 RHLSLIADYMTFEGGYKAFNRMGIE-YNTSPFAKMSFETTCHFLTEAALRGDVDDLSNPS 1661
Query: 1381 ENIIMGQLPRMGTGCFDL 1398
+++G++ GTG FD+
Sbjct: 1662 SRLVVGRVGNFGTGSFDI 1679
Score = 210 (79.0 bits), Expect = 3.0e-31, Sum P(3) = 3.0e-31
Identities = 64/235 (27%), Positives = 103/235 (43%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q+ +GQQ +EG+R+P ++LP F+ + +S GF+ + +L G+ P E++FH M
Sbjct: 954 SQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIAPQEYYFHCM 1013
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
GREGLIDTAVKT+ + + L + + YD +TV D V +Y D
Sbjct: 1014 AGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYD----HTVRDSDGSIVQFHYGEDSLD 1069
Query: 1129 PTRISPWLLRIELDRKR---MTDK---KLTMEAISEKINAGFGDD-LNCIFNDDNAEKLV 1181
T+ L + E K + K K + A+ + + + L + D
Sbjct: 1070 VTK-QKHLTQFEFSAKNYKSLIQKYKVKSVLSAVDSETASSYAKKALKKPYKYDPVLDKY 1128
Query: 1182 LRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHL 1236
R + S K Q D + D + + + L D L E+ K M L
Sbjct: 1129 PPSRYLGSVSEKFQRAVDEYTQKNPDKLIASKKESKLDDSLLN--ESKFKALMQL 1181
Score = 167 (63.8 bits), Expect = 3.1e-45, Sum P(3) = 3.1e-45
Identities = 36/109 (33%), Positives = 60/109 (55%)
Query: 773 LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
+ +I V + R ++ E+++V YG+ V+ RHL+L+ D MT +G A R GI +T
Sbjct: 1572 ILRIYGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFEGGYKAFNRMGIE-YNT 1630
Query: 833 GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 881
+ SFE T L +AA + D + S +++G++ GTG FD+
Sbjct: 1631 SPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGSFDI 1679
Score = 120 (47.3 bits), Expect = 5.9e-22, Sum P(3) = 5.9e-22
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEH-QRIDTVALSHKKF 650
GY+QR L+K +E + V YD TVR+S G ++Q YGED L +H + + A ++K
Sbjct: 1030 GYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQFHYGEDSLDVTKQKHLTQFEFSAKNYKSL 1089
Query: 651 EDKYR 655
KY+
Sbjct: 1090 IQKYK 1094
Score = 115 (45.5 bits), Expect = 8.1e-40, Sum P(3) = 8.1e-40
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++ E+++V YG+ V+ RHL+L+ D MT +G A R GI +T + SFE T
Sbjct: 1584 AIVHEVSSVFGVYGIAVDPRHLSLIADYMTFEGGYKAFNRMGIE-YNTSPFAKMSFETTC 1642
Query: 576 DVLMDAAAHAEADPMRGYIQRRLI 599
L +AA + D + R ++
Sbjct: 1643 HFLTEAALRGDVDDLSNPSSRLVV 1666
Score = 84 (34.6 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 27/123 (21%), Positives = 48/123 (39%)
Query: 92 PCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPGDTK--VVVEHGS 149
P I +P WTGKQ+ S ++ N+ + + + P ++ SP + V+ + G
Sbjct: 732 PAIQRPGIYWTGKQIISSVLL-NLKPSDRPGLNLKSKAKVPGKYWSPDSEEGSVLFDDGE 790
Query: 150 LLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIA 209
LL GI H G ++ GR + + + + G + + D
Sbjct: 791 LLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLSRLFTAYAQMRGFTCRMDDLRL 850
Query: 210 DPQ 212
D Q
Sbjct: 851 DEQ 853
Score = 40 (19.1 bits), Expect = 2.0e-25, Sum P(4) = 2.0e-25
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 773 LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAIT 823
LC I+ S S +++V + YG + R L++L + TA + T
Sbjct: 792 LCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLSRLFTAYAQMRGFT 842
Score = 38 (18.4 bits), Expect = 8.1e-32, Sum P(3) = 8.1e-32
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 1521 KMTKRDVFLDKVTANTAIYYDPDPQNTVIPEDQEFVNVY 1559
+++ D++ + + A IY +N ++ E VY
Sbjct: 1558 EISMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVY 1596
Score = 38 (18.4 bits), Expect = 2.0e-25, Sum P(4) = 2.0e-25
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 561 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGYIQRRLI 599
Q T A F D DP+RG IQ ++
Sbjct: 655 QSTNARSEAQFIANTD--SQYLVPTSGDPLRGLIQDHVV 691
Score = 37 (18.1 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 1218 LSDMTLQGIEAIGKVYMHLPQTDSKK 1243
LS LQ +E GK+ + + SKK
Sbjct: 251 LSGKNLQFMEQTGKIRSDVLRDTSKK 276
>CGD|CAL0001661 [details] [associations]
symbol:RPA190 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 CGD:CAL0001661
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AACQ01000244
EMBL:AACQ01000240 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 RefSeq:XP_710723.1 RefSeq:XP_710761.1
ProteinModelPortal:Q59LW3 STRING:Q59LW3 GeneID:3647643
GeneID:3647677 KEGG:cal:CaO19.1839 KEGG:cal:CaO19.9397
Uniprot:Q59LW3
Length = 1665
Score = 352 (129.0 bits), Expect = 1.0e-48, Sum P(4) = 1.0e-48
Identities = 75/211 (35%), Positives = 122/211 (57%)
Query: 247 SIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRIL 306
S+ IG A T L+ + K + E++++ + + L +++VN I
Sbjct: 832 SVDIGRVAATEVTNLD-----EDTKNNNKELLRRLEEILRDDNKLGILDALTQSKVNAIT 886
Query: 307 NDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 366
+ K YN+++AM ++G+KGSN+N+SQ++ +GQQ +EG+R+P +
Sbjct: 887 SQVVSKCVPDGTMKRFPYNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGK 946
Query: 367 TLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLI 426
TLP F + + G+++ + +G+ P E++FH M GREGLIDTAVKT+ +GY+QR L
Sbjct: 947 TLPSFKPFETDARAGGYIKQRFYSGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLT 1006
Query: 427 KAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
K +E V V YD +VR++ G LIQ YG D +
Sbjct: 1007 KQLEGVHVSYDNSVRDADGTLIQFLYGGDAV 1037
Score = 226 (84.6 bits), Expect = 1.0e-48, Sum P(4) = 1.0e-48
Identities = 58/186 (31%), Positives = 95/186 (51%)
Query: 1213 IEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVL 1272
I ++L + ++ I IG+ P + KRI+ TE F+A+ W D +
Sbjct: 1488 IVEDLLRKVVVREIPHIGRCIRPEPDAKTGKRILTTEGVNFRAM--W----DQDDFI--- 1538
Query: 1273 SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTA 1332
+V+ + SND+ + + G+EA R ++ E+ V YG+ V+ RHL L+ D+MT
Sbjct: 1539 ---NVNGIT--SNDVYAVLKTYGVEAARNTIVNEIYRVFDTYGISVSSRHLDLIADMMTR 1593
Query: 1333 KGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMG 1392
+G +A R GI+ T A M+ S+E T L A + + + S I+MG+L +G
Sbjct: 1594 EGTYLAFNRQGID-SSTSAFMKMSYETTCQFLTKAVLDGDREELESPSAKIVMGKLSNVG 1652
Query: 1393 TGCFDL 1398
TG FD+
Sbjct: 1653 TGSFDV 1658
Score = 184 (69.8 bits), Expect = 6.3e-31, Sum P(4) = 6.3e-31
Identities = 41/125 (32%), Positives = 67/125 (53%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q++ +GQQ +EG+R+P +TLP F + + G+++ + +G+ P E++FH M
Sbjct: 923 SQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKQRFYSGIRPQEYYFHCM 982
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
GREGLIDTAVKT+ + + L + + YD N+V D + Y D
Sbjct: 983 AGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYD----NSVRDADGTLIQFLYGGDAVD 1038
Query: 1129 PTRIS 1133
T+ S
Sbjct: 1039 TTKQS 1043
Score = 174 (66.3 bits), Expect = 1.2e-44, Sum P(3) = 1.2e-44
Identities = 37/103 (35%), Positives = 57/103 (55%)
Query: 779 VLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 838
V + R ++ E+ V YG+ V+ RHL L+ D+MT +G +A R GI+ T A M+
Sbjct: 1557 VEAARNTIVNEIYRVFDTYGISVSSRHLDLIADMMTREGTYLAFNRQGID-SSTSAFMKM 1615
Query: 839 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 881
S+E T L A + + + S I+MG+L +GTG FD+
Sbjct: 1616 SYETTCQFLTKAVLDGDREELESPSAKIVMGKLSNVGTGSFDV 1658
Score = 114 (45.2 bits), Expect = 2.1e-38, Sum P(3) = 2.1e-38
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++ E+ V YG+ V+ RHL L+ D+MT +G +A R GI+ T A M+ S+E T
Sbjct: 1563 TIVNEIYRVFDTYGISVSSRHLDLIADMMTREGTYLAFNRQGID-SSTSAFMKMSYETTC 1621
Query: 576 DVLMDAAAHAEADPM 590
L A + + +
Sbjct: 1622 QFLTKAVLDGDREEL 1636
Score = 103 (41.3 bits), Expect = 1.0e-48, Sum P(4) = 1.0e-48
Identities = 31/119 (26%), Positives = 50/119 (42%)
Query: 92 PCILKPKPLWTGKQVFSLII----PGNVNMTRTHSTHPDDEDSGPYQWISPGDTKVVVEH 147
P I KP+ LWTGKQV + ++ P NV S + D Y S + +V+ ++
Sbjct: 699 PAIYKPEMLWTGKQVITTVLLNIKPDNVPGVNLISKNKIKSD---YWSESSTENEVIFKN 755
Query: 148 GSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGD 206
G LL GI H G V G+ + + N++++ + G+ D
Sbjct: 756 GELLSGILDKSQYGASQFGIVHSLHEVYGPTVAGKALSVLGRLFTNYIMMTAFTCGMDD 814
Score = 95 (38.5 bits), Expect = 7.7e-22, Sum P(4) = 7.7e-22
Identities = 33/97 (34%), Positives = 49/97 (50%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GY+QR L K +E V V YD +VR++ G LIQ YG G+AV DT SH
Sbjct: 999 GYLQRCLTKQLEGVHVSYDNSVRDADGTLIQFLYG-----GDAV-----DTTKQSHM--- 1045
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEK 688
++++F N L +N + E + + +S +K
Sbjct: 1046 NQFKFCVDNYDALLTKYNPGDMTENIDTDLALSYSKK 1082
Score = 62 (26.9 bits), Expect = 5.3e-33, Sum P(3) = 5.3e-33
Identities = 50/207 (24%), Positives = 80/207 (38%)
Query: 1479 GFGLLTLTL----MVENIHVTPRQIITPQNNRPVMGIVQDTLT-AVRKMTKRDV---FLD 1530
G G +TL M E I I TPQ P++ V D A K R V F+D
Sbjct: 1198 GHGAANVTLGIPRMREIIMTASASIKTPQMTLPILADVNDEQADAFCKSVARVVMSEFVD 1257
Query: 1531 KVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKL- 1589
KV D D N+ +Y +++ T + + +L+ +T K L
Sbjct: 1258 KVVVTETTSQDVDGSNS---RSYVIGLKFYTKEEYE-TEYD--ISQEQLEDV-ITSKFLH 1310
Query: 1590 TMEA-ISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDL---NCIFNDDNAEK 1645
+E I +++ D + + K ME +S KI DD N + D + E+
Sbjct: 1311 ALEGQIVKEVKKQKKPDYMPTVGKSAGKTDMETVSGKIKEIDNDDDDEDNEVDEDHDEEQ 1370
Query: 1646 LVLRIRIMNSDDSKMQDEEDAVDKMED 1672
++ S + DE + + K E+
Sbjct: 1371 AKQNVKQQVSYEGPDDDEIETMKKAEE 1397
Score = 42 (19.8 bits), Expect = 6.3e-31, Sum P(3) = 6.3e-31
Identities = 22/89 (24%), Positives = 38/89 (42%)
Query: 1588 KLTMEAISEKINAGFGDDL---NTPLSPTDKKLTMEAISEKINAGFGDDLNCIFNDDNAE 1644
K ME +S KI DD N D++ + + ++++ DD + I AE
Sbjct: 1338 KTDMETVSGKIKEIDNDDDDEDNEVDEDHDEEQAKQNVKQQVSYEGPDD-DEIETMKKAE 1396
Query: 1645 KLVLRIRIMNSDDSKMQDEEDAVDKMEDD 1673
+ M+ D+S D+ D+ E+D
Sbjct: 1397 ET--SDEEMDGDNSSSSDDSDSDSDNEED 1423
Score = 38 (18.4 bits), Expect = 1.0e-48, Sum P(4) = 1.0e-48
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 1187 MNSDDSKMQDEEDAVDKMEDD 1207
M+ D+S D+ D+ E+D
Sbjct: 1403 MDGDNSSSSDDSDSDSDNEED 1423
Score = 37 (18.1 bits), Expect = 3.5e-24, Sum P(4) = 3.5e-24
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 268 KKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVN 303
+ A+ + + + N L PT G+ LR ++ ++
Sbjct: 623 ENARAEALN-LANTDNQYLTPTSGSPLRGLIQDHIS 657
>UNIPROTKB|B9ZVN9 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AC009309 PANTHER:PTHR19376:SF11 HGNC:HGNC:17264
HOGENOM:HOG000205401 ChiTaRS:POLR1A EMBL:AC012511 IPI:IPI00916060
ProteinModelPortal:B9ZVN9 STRING:B9ZVN9 Ensembl:ENST00000409681
ArrayExpress:B9ZVN9 Bgee:B9ZVN9 Uniprot:B9ZVN9
Length = 1659
Score = 417 (151.9 bits), Expect = 1.3e-48, Sum P(3) = 1.3e-48
Identities = 120/384 (31%), Positives = 190/384 (49%)
Query: 88 KMPQPCILKPKPLWTGKQVFSL----IIPGN---VNMT-RTHSTHP----DDEDSGP-YQ 134
K+ P ILKP PLWTGKQV S IIP + +N++ + T + S P +
Sbjct: 669 KLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAWVKETPRSVPGFN 728
Query: 135 WISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNW 194
S +++V++ G LL G+ H C+ G E G+ + + +
Sbjct: 729 PDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAY 788
Query: 195 L-LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
L L G ++G+ D + P+ ++ Q I+++ + ++ A N+ P
Sbjct: 789 LQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNL---P----------- 834
Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
+ +Y E+ + K Q AH + + N + F+ +VN N+
Sbjct: 835 --EAASYDEV-----RGKW------QDAH-LGKDQRDFNMIDLKFKEEVNHYSNEINKAC 880
Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
N+L+ MV +G+KGS +N Q+ +GQ +EG+R P ++LP F
Sbjct: 881 MPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEP 940
Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
++ P + GFV +L G+ P EFFFH M GREGL+DTAVKT+ +GY+QR +IK +E ++
Sbjct: 941 YEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLV 1000
Query: 434 VHYDCTVRNSVGQLIQLRYGEDGL 457
V YD TVR+S G ++Q YGEDGL
Sbjct: 1001 VQYDLTVRDSDGSVVQFLYGEDGL 1024
Score = 211 (79.3 bits), Expect = 1.3e-48, Sum P(3) = 1.3e-48
Identities = 52/156 (33%), Positives = 84/156 (53%)
Query: 1244 RIIITESGEFKAIADWLLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKS 1302
R ++ E+ K + +L T+G +L ++ +V D R +SNDI I GIEA +
Sbjct: 1500 RCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRV 1559
Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1362
+EKE+ V YG+ V+ RHL+L+ D M +G + R GI R ++ L + +FE +
Sbjct: 1560 IEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQ 1618
Query: 1363 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1398
L A D +R S +++G++ R GTG F+L
Sbjct: 1619 FLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFEL 1654
Score = 179 (68.1 bits), Expect = 6.2e-24, Sum P(4) = 6.2e-24
Identities = 37/93 (39%), Positives = 55/93 (59%)
Query: 1012 IACV-GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 1070
I+C+ GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M G
Sbjct: 912 ISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAG 971
Query: 1071 REGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
REGL+DTAVKT+ + + + + + YD
Sbjct: 972 REGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004
Score = 154 (59.3 bits), Expect = 1.9e-44, Sum P(2) = 1.9e-44
Identities = 41/146 (28%), Positives = 75/146 (51%)
Query: 736 REIFSSGESNVVLPCNLMEVIFILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQ 795
+E+ + E + LP L + +L +L+ N+ + + + + + +EKE+ V
Sbjct: 1513 KELVLNTEG-INLP-ELFKYAEVLDLRRLYSND-IHAIANTYGIEAALRVIEKEIKDVFA 1569
Query: 796 FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE 855
YG+ V+ RHL+L+ D M +G + R GI R ++ L + +FE + L A
Sbjct: 1570 VYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQATMLGS 1628
Query: 856 ADPMRGVSENIIMGQLPRMGTGCFDL 881
D +R S +++G++ R GTG F+L
Sbjct: 1629 HDELRSPSACLVVGKVVRGGTGLFEL 1654
Score = 119 (46.9 bits), Expect = 7.5e-18, Sum P(4) = 7.5e-18
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL
Sbjct: 986 GYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 1024
Score = 107 (42.7 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 514 LTSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 573
L +EKE+ V YG+ V+ RHL+L+ D M +G + R GI R ++ L + +FE
Sbjct: 1557 LRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFET 1615
Query: 574 TVDVLMDAAAHAEADPMR 591
+ L A D +R
Sbjct: 1616 SFQFLKQATMLGSHDELR 1633
Score = 56 (24.8 bits), Expect = 6.2e-24, Sum P(4) = 6.2e-24
Identities = 17/68 (25%), Positives = 35/68 (51%)
Query: 299 ENQVNRILNDARDKTGGSAKKSLTEYNN-LKAMVVAGSKGSNI-NI----SQVIACVGQQ 352
E +NR L + D + ++ L +Y + + GS+G+++ N+ S++IA +
Sbjct: 139 ERILNRFLEENPDPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVCESKSKLIALFWKA 198
Query: 353 NVEGKRIP 360
++ KR P
Sbjct: 199 HMNAKRCP 206
Score = 39 (18.8 bits), Expect = 2.3e-32, Sum P(2) = 2.3e-32
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 1522 MTKRDVFLD---KVT-ANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD 1564
+ +R FL K+ A A+ + + +N P QE + ++YE+ +
Sbjct: 1083 LLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDE 1129
Score = 37 (18.1 bits), Expect = 1.3e-48, Sum P(3) = 1.3e-48
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 1099 AIYYDPDPQNTVIPEDQEFVNVYYEMPD 1126
A+ + + +N P QE + ++YE+ +
Sbjct: 1102 ALKLESENRNGRSPGTQEMLRMWYELDE 1129
>UNIPROTKB|O95602 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase I subunit RPA1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=NAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=TAS] [GO:0006361 "transcription
initiation from RNA polymerase I promoter" evidence=TAS]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=TAS] [GO:0006363 "termination of RNA polymerase
I transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CH471053
GO:GO:0005654 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0009303
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 EMBL:U33460 EMBL:AH007280 EMBL:AK302458
EMBL:BC117173 EMBL:BC126303 EMBL:AL117467 IPI:IPI00031960
PIR:T17252 RefSeq:NP_056240.2 UniGene:Hs.531818
ProteinModelPortal:O95602 SMR:O95602 DIP:DIP-27537N IntAct:O95602
MINT:MINT-111492 STRING:O95602 PhosphoSite:O95602
SWISS-2DPAGE:O95602 PaxDb:O95602 PRIDE:O95602
Ensembl:ENST00000263857 GeneID:25885 KEGG:hsa:25885 UCSC:uc002sqs.3
CTD:25885 GeneCards:GC02M086253 H-InvDB:HIX0002233 HGNC:HGNC:17264
HPA:CAB010145 neXtProt:NX_O95602 PharmGKB:PA134891380
HOGENOM:HOG000205401 HOVERGEN:HBG017741 InParanoid:O95602
OrthoDB:EOG41VK23 ChiTaRS:POLR1A GenomeRNAi:25885 NextBio:47304
PMAP-CutDB:O95602 ArrayExpress:O95602 Bgee:O95602 CleanEx:HS_POLR1A
Genevestigator:O95602 GermOnline:ENSG00000068654 Uniprot:O95602
Length = 1720
Score = 417 (151.9 bits), Expect = 1.5e-48, Sum P(3) = 1.5e-48
Identities = 120/384 (31%), Positives = 190/384 (49%)
Query: 88 KMPQPCILKPKPLWTGKQVFSL----IIPGN---VNMT-RTHSTHP----DDEDSGP-YQ 134
K+ P ILKP PLWTGKQV S IIP + +N++ + T + S P +
Sbjct: 669 KLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAWVKETPRSVPGFN 728
Query: 135 WISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNW 194
S +++V++ G LL G+ H C+ G E G+ + + +
Sbjct: 729 PDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAY 788
Query: 195 L-LLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGIGDT 253
L L G ++G+ D + P+ ++ Q I+++ + ++ A N+ P
Sbjct: 789 LQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNL---P----------- 834
Query: 254 IADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 313
+ +Y E+ + K Q AH + + N + F+ +VN N+
Sbjct: 835 --EAASYDEV-----RGKW------QDAH-LGKDQRDFNMIDLKFKEEVNHYSNEINKAC 880
Query: 314 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 373
N+L+ MV +G+KGS +N Q+ +GQ +EG+R P ++LP F
Sbjct: 881 MPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEP 940
Query: 374 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 433
++ P + GFV +L G+ P EFFFH M GREGL+DTAVKT+ +GY+QR +IK +E ++
Sbjct: 941 YEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLV 1000
Query: 434 VHYDCTVRNSVGQLIQLRYGEDGL 457
V YD TVR+S G ++Q YGEDGL
Sbjct: 1001 VQYDLTVRDSDGSVVQFLYGEDGL 1024
Score = 211 (79.3 bits), Expect = 1.5e-48, Sum P(3) = 1.5e-48
Identities = 52/156 (33%), Positives = 84/156 (53%)
Query: 1244 RIIITESGEFKAIADWLLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKS 1302
R ++ E+ K + +L T+G +L ++ +V D R +SNDI I GIEA +
Sbjct: 1561 RCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRV 1620
Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1362
+EKE+ V YG+ V+ RHL+L+ D M +G + R GI R ++ L + +FE +
Sbjct: 1621 IEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQ 1679
Query: 1363 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1398
L A D +R S +++G++ R GTG F+L
Sbjct: 1680 FLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFEL 1715
Score = 179 (68.1 bits), Expect = 7.3e-24, Sum P(4) = 7.3e-24
Identities = 37/93 (39%), Positives = 55/93 (59%)
Query: 1012 IACV-GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 1070
I+C+ GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M G
Sbjct: 912 ISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAG 971
Query: 1071 REGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
REGL+DTAVKT+ + + + + + YD
Sbjct: 972 REGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004
Score = 154 (59.3 bits), Expect = 2.2e-44, Sum P(2) = 2.2e-44
Identities = 41/146 (28%), Positives = 75/146 (51%)
Query: 736 REIFSSGESNVVLPCNLMEVIFILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQ 795
+E+ + E + LP L + +L +L+ N+ + + + + + +EKE+ V
Sbjct: 1574 KELVLNTEG-INLP-ELFKYAEVLDLRRLYSND-IHAIANTYGIEAALRVIEKEIKDVFA 1630
Query: 796 FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE 855
YG+ V+ RHL+L+ D M +G + R GI R ++ L + +FE + L A
Sbjct: 1631 VYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQATMLGS 1689
Query: 856 ADPMRGVSENIIMGQLPRMGTGCFDL 881
D +R S +++G++ R GTG F+L
Sbjct: 1690 HDELRSPSACLVVGKVVRGGTGLFEL 1715
Score = 119 (46.9 bits), Expect = 8.9e-18, Sum P(4) = 8.9e-18
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL
Sbjct: 986 GYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 1024
Score = 107 (42.7 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 514 LTSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 573
L +EKE+ V YG+ V+ RHL+L+ D M +G + R GI R ++ L + +FE
Sbjct: 1618 LRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFET 1676
Query: 574 TVDVLMDAAAHAEADPMR 591
+ L A D +R
Sbjct: 1677 SFQFLKQATMLGSHDELR 1694
Score = 56 (24.8 bits), Expect = 7.3e-24, Sum P(4) = 7.3e-24
Identities = 17/68 (25%), Positives = 35/68 (51%)
Query: 299 ENQVNRILNDARDKTGGSAKKSLTEYNN-LKAMVVAGSKGSNI-NI----SQVIACVGQQ 352
E +NR L + D + ++ L +Y + + GS+G+++ N+ S++IA +
Sbjct: 139 ERILNRFLEENPDPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVCESKSKLIALFWKA 198
Query: 353 NVEGKRIP 360
++ KR P
Sbjct: 199 HMNAKRCP 206
Score = 39 (18.8 bits), Expect = 2.5e-32, Sum P(2) = 2.5e-32
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 1522 MTKRDVFLD---KVT-ANTAIYYDPDPQNTVIPEDQEFVNVYYEMPD 1564
+ +R FL K+ A A+ + + +N P QE + ++YE+ +
Sbjct: 1083 LLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDE 1129
Score = 37 (18.1 bits), Expect = 1.5e-48, Sum P(3) = 1.5e-48
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 1099 AIYYDPDPQNTVIPEDQEFVNVYYEMPD 1126
A+ + + +N P QE + ++YE+ +
Sbjct: 1102 ALKLESENRNGRSPGTQEMLRMWYELDE 1129
>TAIR|locus:2076661 [details] [associations]
symbol:NRPA1 "nuclear RNA polymerase A1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA] [GO:0006406
"mRNA export from nucleus" evidence=RCA] [GO:0006606 "protein
import into nucleus" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0009506 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
EMBL:AL049660 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 HSSP:P04050 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 IPI:IPI00546513
PIR:T06754 RefSeq:NP_191325.1 UniGene:At.50286
ProteinModelPortal:Q9SVY0 SMR:Q9SVY0 IntAct:Q9SVY0 STRING:Q9SVY0
PaxDb:Q9SVY0 PRIDE:Q9SVY0 EnsemblPlants:AT3G57660.1 GeneID:824935
KEGG:ath:AT3G57660 TAIR:At3g57660 InParanoid:Q9SVY0
PhylomeDB:Q9SVY0 ProtClustDB:CLSN2684581 Genevestigator:Q9SVY0
Uniprot:Q9SVY0
Length = 1670
Score = 379 (138.5 bits), Expect = 2.3e-48, Sum P(3) = 2.3e-48
Identities = 91/240 (37%), Positives = 141/240 (58%)
Query: 221 IKKAKEDVIEVIQKAHNMDLEPTPGHSIGIG-DTIADPQTYLEIQMAIKKAK-EDVIEVI 278
+K E+ + +Q+ N+ E + GI D DPQ +++ I++ ED +
Sbjct: 846 LKDMDEERTKQLQECENVG-ERVLRKTFGIDVDVQIDPQ---DMRSRIERILYEDGESAL 901
Query: 279 QKAHNMDLEPTPGNTLRQTFENQV-NRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKG 337
L+ + N L Q V N +L+D KT G N + M ++G+KG
Sbjct: 902 AS-----LDRSIVNYLNQCSSKGVMNDLLSDGLLKTPGR--------NCISLMTISGAKG 948
Query: 338 SNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 397
S +N Q+ + +GQQ++EGKR+P +TLP F D+ P + GF+ + +L+GL P E+
Sbjct: 949 SKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEY 1008
Query: 398 FFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
+FH M GREGL+DTAVKT+ +GY+QR L+K +ES+ V+YDCTVR++ G +IQ +YGEDG+
Sbjct: 1009 YFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGV 1068
Score = 211 (79.3 bits), Expect = 9.6e-30, Sum P(4) = 9.6e-30
Identities = 62/203 (30%), Positives = 102/203 (50%)
Query: 1010 QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 1069
Q+ + +GQQ++EGKR+P +TLP F D+ P + GF+ + +L+GL P E++FH M
Sbjct: 955 QISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMA 1014
Query: 1070 GREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDP 1129
GREGL+DTAVKT+ + + L + + + YD TV D + Y D
Sbjct: 1015 GREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDC----TVRDADGSIIQFQYGEDGVDV 1070
Query: 1130 TRISPWLLRIELDRKRMTDKKLTMEAISEKINAG---FGDDLNCIFNDDNAEKLVLRIRI 1186
R S IE ++ ++ + ++ SE + +G + DL I AEK V + +
Sbjct: 1071 HRSS----FIEKFKELTINQDMVLQKCSEDMLSGASSYISDLP-ISLKKGAEKFVEAMPM 1125
Query: 1187 MNSDDSKMQDEEDAVDKMEDDMF 1209
SK +E+ + ++ F
Sbjct: 1126 NERIASKFVRQEELLKLVKSKFF 1148
Score = 208 (78.3 bits), Expect = 2.3e-48, Sum P(3) = 2.3e-48
Identities = 49/145 (33%), Positives = 76/145 (52%)
Query: 1261 LETDGTSLMKVLSERDVDPVR-TFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVN 1319
L G + +D VR +SN I ++ + G+EA R+++ +E+N V + YG+ V+
Sbjct: 1526 LHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNIFGVEAARETIIREINHVFKSYGISVS 1585
Query: 1320 YRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGV 1379
RHL L+ D MT G ++R G + T R +FE ++ AA + E D +
Sbjct: 1586 IRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEKDTLETP 1645
Query: 1380 SENIIMGQLPRM-GTGCFDLLLDAE 1403
S I +G LP + GTGCFDL+ E
Sbjct: 1646 SARICLG-LPALSGTGCFDLMQRVE 1669
Score = 175 (66.7 bits), Expect = 6.2e-45, Sum P(3) = 6.2e-45
Identities = 42/124 (33%), Positives = 67/124 (54%)
Query: 764 LWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAIT 823
L+ N ++ + I V + R+++ +E+N V + YG+ V+ RHL L+ D MT G ++
Sbjct: 1548 LYSN-SIHDMLNIFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRPMS 1606
Query: 824 RHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRM-GTGCFDLL 882
R G + T R +FE ++ AA + E D + S I +G LP + GTGCFDL+
Sbjct: 1607 RMGGIAESTSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLG-LPALSGTGCFDLM 1665
Query: 883 LDAE 886
E
Sbjct: 1666 QRVE 1669
Score = 130 (50.8 bits), Expect = 4.5e-22, Sum P(3) = 4.5e-22
Identities = 23/39 (58%), Positives = 33/39 (84%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR L+K +ES+ V+YDCTVR++ G +IQ +YGEDG+
Sbjct: 1030 GYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGV 1068
Score = 113 (44.8 bits), Expect = 1.8e-38, Sum P(3) = 1.8e-38
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++ +E+N V + YG+ V+ RHL L+ D MT G ++R G + T R +FE
Sbjct: 1568 TIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETAT 1627
Query: 576 DVLMDAAAHAEADPM 590
++ AA + E D +
Sbjct: 1628 KFIVQAATYGEKDTL 1642
Score = 77 (32.2 bits), Expect = 2.3e-48, Sum P(3) = 2.3e-48
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 92 PCILKPKPLWTGKQVFSLII 111
P ILKP PLWTGKQV + ++
Sbjct: 706 PAILKPVPLWTGKQVITAVL 725
Score = 44 (20.5 bits), Expect = 9.6e-30, Sum P(4) = 9.6e-30
Identities = 29/108 (26%), Positives = 47/108 (43%)
Query: 514 LTSVEKEMNTV-LQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA-LMRCSF 571
L SV + TV LQ +G L +L D+ + T+ ++ G ++R +F
Sbjct: 819 LLSVFSRLFTVFLQTHGFTCGVDDLIILKDMDEER------TKQLQECENVGERVLRKTF 872
Query: 572 EETVDVLMDAAAHAEADPMRGYIQRRLIKAMESVMVHYDCTVRNSVGQ 619
VDV +D MR I+R L + ES + D ++ N + Q
Sbjct: 873 GIDVDVQIDP------QDMRSRIERILYEDGESALASLDRSIVNYLNQ 914
Score = 41 (19.5 bits), Expect = 5.3e-31, Sum P(3) = 5.3e-31
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 1256 IADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1293
I D L + ++K + E V P + N++C I ++
Sbjct: 1227 ITDRLRKITVADIIKSM-ELSVVPYTVYENEVCSIHKL 1263
Score = 41 (19.5 bits), Expect = 1.6e-12, Sum P(4) = 1.6e-12
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 1170 CIFNDDNAEKLVLRIRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQ 1224
C+ + + K+ + ++D S +Q + ED VD + E + DM LQ
Sbjct: 1035 CLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVDVHRSSFIEKFKELTINQDMVLQ 1091
Score = 40 (19.1 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 681 DVISELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREIFS 740
D IS E + + + Q R N + LR L+ V S L + + + + +FS
Sbjct: 615 DEISRAEAYNIVNAN-NQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFS 673
Query: 741 SGESNVVL 748
SG +++VL
Sbjct: 674 SGVTDMVL 681
>ZFIN|ZDB-GENE-030131-5286 [details] [associations]
symbol:polr1a "polymerase (RNA) I polypeptide A"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 ZFIN:ZDB-GENE-030131-5286
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861 EMBL:AL929267
EMBL:CU694378 IPI:IPI00934858 Ensembl:ENSDART00000114501
ArrayExpress:E7F710 Bgee:E7F710 Uniprot:E7F710
Length = 1710
Score = 360 (131.8 bits), Expect = 9.4e-48, Sum P(3) = 9.4e-48
Identities = 77/180 (42%), Positives = 112/180 (62%)
Query: 279 QKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG-SAKKSLTEYNNLKAMVVAGSKG 337
Q AH ++++ N + F+ +VN++ N+ +S E NNL+ MV +G+KG
Sbjct: 843 QDAH-LNIDQRDFNMVDLKFKEEVNQVNNNINKVCMPLGLHRSFPE-NNLQMMVQSGAKG 900
Query: 338 SNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 397
S +N Q+ +GQ +EG+R P ++LP F + P S GFV +L G+ P EF
Sbjct: 901 STVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPPEF 960
Query: 398 FFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
FFH M GREGL+DTAVKT+ +GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL
Sbjct: 961 FFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 1020
Score = 187 (70.9 bits), Expect = 9.4e-48, Sum P(3) = 9.4e-48
Identities = 45/162 (27%), Positives = 82/162 (50%)
Query: 1238 QTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGI 1296
+T R ++ E + +L T+G ++ ++ D+ D R +SN++ + GI
Sbjct: 1545 ETKGITRCLLNEVTRKDGSKEIMLNTEGINIHEMFKYADILDLKRLYSNEVHAMASTYGI 1604
Query: 1297 EAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1356
E + +EKE+ V YG+ V+ RHL+L+ D M +G + R GI + ++ L + +
Sbjct: 1605 EVALRVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRFGI-QSNSSPLQQMT 1663
Query: 1357 FEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1398
FE + L A D + S +++G++ + GTG FDL
Sbjct: 1664 FETSFKFLKQATMLGSYDKLSSPSACLVVGKVVKGGTGIFDL 1705
Score = 173 (66.0 bits), Expect = 7.2e-28, Sum P(3) = 7.2e-28
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 1012 IACV-GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 1070
I+C+ GQ +EG+R P ++LP F + P S GFV +L G+ P EFFFH M G
Sbjct: 908 ISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPPEFFFHCMAG 967
Query: 1071 REGLIDTAVKTAET 1084
REGL+DTAVKT+ +
Sbjct: 968 REGLVDTAVKTSRS 981
Score = 141 (54.7 bits), Expect = 5.9e-43, Sum P(3) = 5.9e-43
Identities = 36/124 (29%), Positives = 63/124 (50%)
Query: 758 ILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 817
IL +L+ NE + + + + +EKE+ V YG+ V+ RHL+L+ D M +G
Sbjct: 1584 ILDLKRLYSNE-VHAMASTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEG 1642
Query: 818 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 877
+ R GI + ++ L + +FE + L A D + S +++G++ + GTG
Sbjct: 1643 VYKPLNRFGI-QSNSSPLQQMTFETSFKFLKQATMLGSYDKLSSPSACLVVGKVVKGGTG 1701
Query: 878 CFDL 881
FDL
Sbjct: 1702 IFDL 1705
Score = 118 (46.6 bits), Expect = 3.4e-22, Sum P(3) = 3.4e-22
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL
Sbjct: 982 GYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 1020
Score = 112 (44.5 bits), Expect = 9.4e-48, Sum P(3) = 9.4e-48
Identities = 37/135 (27%), Positives = 57/135 (42%)
Query: 88 KMPQPCILKPKPLWTGKQVFSL----IIPGN---VNMTRTHSTHPD---DEDSGPYQWIS 137
K+ P ++KP LWTGKQV S +IP N +N+T E P
Sbjct: 674 KLLPPTLIKPVLLWTGKQVVSTLLLNVIPENSIPLNLTGKAKIPGKAWVKESPRPVPGYV 733
Query: 138 PG---DTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNW 194
P +++VV+ G LLMG+ H C+ G E G+ + + +
Sbjct: 734 PESMCESQVVIRQGELLMGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAY 793
Query: 195 L-LLEGHSIGIGDTI 208
L L G ++G+ D +
Sbjct: 794 LQLYRGFTLGVEDIL 808
Score = 97 (39.2 bits), Expect = 2.2e-38, Sum P(3) = 2.2e-38
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 514 LTSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 573
L +EKE+ V YG+ V+ RHL+L+ D M +G + R GI + ++ L + +FE
Sbjct: 1608 LRVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRFGI-QSNSSPLQQMTFET 1666
Query: 574 TVDVLMDAAAHAEADPM 590
+ L A D +
Sbjct: 1667 SFKFLKQATMLGSYDKL 1683
Score = 52 (23.4 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 270 AKEDVIEVIQKAHNMDLE--PTP-GNTLRQTFENQVNRILNDARDKTGGSAKKSLTE 323
A ++V E I+ N LE P+P G +++T + V IL +DK K + E
Sbjct: 131 AMKEVFE-IENVLNQFLESNPSPPGEEIQETLNDFVKPILETRKDKQHTDPVKHICE 186
Score = 42 (19.8 bits), Expect = 2.1e-14, Sum P(3) = 2.1e-14
Identities = 12/62 (19%), Positives = 29/62 (46%)
Query: 293 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 352
++ +TF++ V LN K SA T+ + L+ ++ + + + + + V Q
Sbjct: 1154 SVSETFDSIVESYLNQFNIKQEFSASSETTDADRLRNLLQLKWQRALCDPGEAVGLVAAQ 1213
Query: 353 NV 354
++
Sbjct: 1214 SI 1215
Score = 38 (18.4 bits), Expect = 4.8e-40, Sum P(3) = 4.8e-40
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 130 SGPYQWISPGDTKVVVEHGS 149
+GP I PG T VV E GS
Sbjct: 492 NGPN--IHPGATMVVNEDGS 509
Score = 38 (18.4 bits), Expect = 3.0e-32, Sum P(3) = 3.0e-32
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 769 NLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYR 804
N+ + K +L +++ E++ + YG+ V R
Sbjct: 1574 NIHEMFKYADILDLKRLYSNEVHAMASTYGIEVALR 1609
>SGD|S000005868 [details] [associations]
symbol:RPA190 "RNA polymerase I largest subunit A190"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IMP;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IGI;IMP] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 SGD:S000005868 EMBL:BK006948 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:X95720 GO:GO:0005736 GO:GO:0003899 GO:GO:0042790
eggNOG:COG0086 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
HOGENOM:HOG000205401 GeneTree:ENSGT00550000074861 OrthoDB:EOG432464
EMBL:J03530 EMBL:Z75249 PIR:S67250 RefSeq:NP_014986.3
RefSeq:NP_620389.3 ProteinModelPortal:P10964 SMR:P10964
DIP:DIP-999N IntAct:P10964 MINT:MINT-613626 STRING:P10964
PaxDb:P10964 PeptideAtlas:P10964 EnsemblFungi:YOR341W GeneID:854519
GeneID:854523 KEGG:sce:YOR341W KEGG:sce:YOR343W-B CYGD:YOR341w
NextBio:976888 Genevestigator:P10964 GermOnline:YOR341W
Uniprot:P10964
Length = 1664
Score = 344 (126.2 bits), Expect = 2.0e-47, Sum P(4) = 2.0e-47
Identities = 72/198 (36%), Positives = 117/198 (59%)
Query: 262 EIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT--GGSAKK 319
E+ K D E++++ + + L ++VN I + K G+ KK
Sbjct: 860 EVTNLDKDTPADDPELLKRLQEILRDNNKSGILDAVTSSKVNAITSQVVSKCVPDGTMKK 919
Query: 320 SLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPE 379
N+++AM ++G+KGSN+N+SQ++ +GQQ +EG+R+P +TLP F +
Sbjct: 920 F--PCNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAM 977
Query: 380 SRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCT 439
+ G+V+ + +G+ P E++FH M GREGLIDTAVKT+ +GY+QR L K +E V V YD +
Sbjct: 978 AGGYVKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNS 1037
Query: 440 VRNSVGQLIQLRYGEDGL 457
+R++ G L+Q YG D +
Sbjct: 1038 IRDADGTLVQFMYGGDAI 1055
Score = 230 (86.0 bits), Expect = 2.0e-47, Sum P(4) = 2.0e-47
Identities = 53/163 (32%), Positives = 89/163 (54%)
Query: 1237 PQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGI 1296
P+ ++ KR+++TE F+A+ W D + + DVD + SND+ + + G+
Sbjct: 1510 PEPENGKRVLVTEGVNFQAM--W----DQEAFI------DVDGIT--SNDVAAVLKTYGV 1555
Query: 1297 EAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1356
EA R ++ E+N V Y + V++RHL L+ D+MT +G +A R G+ T + M+ S
Sbjct: 1556 EAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQGMETS-TSSFMKMS 1614
Query: 1357 FEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1399
+E T L A E + + S I++G+L +GTG FD+L
Sbjct: 1615 YETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNVGTGSFDVL 1657
Score = 185 (70.2 bits), Expect = 2.0e-31, Sum P(3) = 2.0e-31
Identities = 49/155 (31%), Positives = 79/155 (50%)
Query: 1009 AQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 1068
+Q++ +GQQ +EG+R+P +TLP F + + G+V+ + +G+ P E++FH M
Sbjct: 941 SQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKPQEYYFHCM 1000
Query: 1069 GGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFD 1128
GREGLIDTAVKT+ + + L + + YD N++ D V Y D
Sbjct: 1001 AGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYD----NSIRDADGTLVQFMYGGDAID 1056
Query: 1129 PTRISPWLLRIE--LDRKRMTDKKLTMEAISEKIN 1161
T+ S + + E LD KK A+ E ++
Sbjct: 1057 ITKESH-MTQFEFCLDNYYALLKKYNPSALIEHLD 1090
Score = 171 (65.3 bits), Expect = 2.5e-41, Sum P(4) = 2.5e-41
Identities = 36/104 (34%), Positives = 58/104 (55%)
Query: 779 VLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 838
V + R ++ E+N V Y + V++RHL L+ D+MT +G +A R G+ T + M+
Sbjct: 1555 VEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQGMETS-TSSFMKM 1613
Query: 839 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 882
S+E T L A E + + S I++G+L +GTG FD+L
Sbjct: 1614 SYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNVGTGSFDVL 1657
Score = 116 (45.9 bits), Expect = 1.2e-35, Sum P(4) = 1.2e-35
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++ E+N V Y + V++RHL L+ D+MT +G +A R G+ T + M+ S+E T
Sbjct: 1561 TIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQGMETS-TSSFMKMSYETTC 1619
Query: 576 DVLMDAAAHAEADPMRGYIQRRLIKAMESV 605
L A E + + R ++ + +V
Sbjct: 1620 QFLTKAVLDNEREQLDSPSARIVVGKLNNV 1649
Score = 94 (38.1 bits), Expect = 1.4e-20, Sum P(5) = 1.4e-20
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR L K +E V V YD ++R++ G L+Q YG D +
Sbjct: 1017 GYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMYGGDAI 1055
Score = 90 (36.7 bits), Expect = 2.0e-47, Sum P(4) = 2.0e-47
Identities = 27/117 (23%), Positives = 48/117 (41%)
Query: 92 PCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPYQWISPG--DTKVVVEHGS 149
P I KP PLWTGKQ+ + ++ NV + ++ ++ G + +V+ + G+
Sbjct: 717 PTIFKPYPLWTGKQIITTVLL-NVTPPDMPGINLISKNKIKNEYWGKGSLENEVLFKDGA 775
Query: 150 LLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGD 206
LL GI H G EV + + + N++ + G+ D
Sbjct: 776 LLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSVLGRLFTNYITATAFTCGMDD 832
Score = 56 (24.8 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 37/165 (22%), Positives = 72/165 (43%)
Query: 1576 RIELDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAI-SEKINAGFGDDL 1634
R+E D K T +A+S + D++ T + +K E I S+K + +D
Sbjct: 1364 RLEEDNDEEQSHKKTKQAVS--YDEPDEDEIET-MREAEKSSDEEGIDSDKESDSDSEDE 1420
Query: 1635 NCIFNDDNAEKLVLRIRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEETDRSFVKVDF-V 1692
+ N+ + +V N++ +K+Q D + A+ + F+ D S +F +
Sbjct: 1421 DVDMNEQINKSIVEA----NNNMNKVQRDRQSAI--ISHHRFITKYNFDDESGKWCEFKL 1474
Query: 1693 EPKDLVEWKTLLKQMHSDFCLAQIIKCIPTLSRHLGSDCSSNEKV 1737
E E K L+ + + C II+ IP + R + + + ++V
Sbjct: 1475 ELAADTE-KLLMVNIVEEICRKSIIRQIPHIDRCVHPEPENGKRV 1518
Score = 48 (22.0 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 1187 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRII 1246
M +DD ++D ED +D E + I + +L+++ + E + M + + S R
Sbjct: 148 MYTDDEAIEDNEDEMDG-EGSKQSKDISSTLLNELKSKRSEYVD---MAIAKALSDGRT- 202
Query: 1247 ITESGEFKA 1255
TE G F A
Sbjct: 203 -TERGSFTA 210
Score = 46 (21.3 bits), Expect = 5.8e-42, Sum P(5) = 5.8e-42
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 130 SGPYQWISPGDTKVVVEHGSLL 151
+GP +W PG T++ E GSL+
Sbjct: 525 NGPDKW--PGATQIQNEDGSLV 544
Score = 43 (20.2 bits), Expect = 2.0e-47, Sum P(4) = 2.0e-47
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 462 VEHQRIDTVALSHKKFEDKYRFD 484
V+ R + +SH +F KY FD
Sbjct: 1442 VQRDRQSAI-ISHHRFITKYNFD 1463
Score = 43 (20.2 bits), Expect = 2.0e-47, Sum P(4) = 2.0e-47
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 635 VEHQRIDTVALSHKKFEDKYRFD 657
V+ R + +SH +F KY FD
Sbjct: 1442 VQRDRQSAI-ISHHRFITKYNFD 1463
Score = 43 (20.2 bits), Expect = 1.8e-46, Sum P(5) = 1.8e-46
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 657 DPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFN 704
D NE++ R + +R L+ G+ + + + V S + F+
Sbjct: 1159 DGVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFH 1206
Score = 41 (19.5 bits), Expect = 3.4e-11, Sum P(4) = 3.4e-11
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 983 LVAENYRLSSEAFEWLVGEIENR--FQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 1040
L+++N ++ +E W G +EN F+ ++ + ++ +G K + H + +
Sbjct: 749 LISKN-KIKNEY--WGKGSLENEVLFKDGALLCGILDKS------QYGASKYGIVHSLHE 799
Query: 1041 DYGPE 1045
YGPE
Sbjct: 800 VYGPE 804
Score = 40 (19.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 1187 MNSDDSKMQDEEDAVDKMEDDM 1208
+ S +S M +++A++ ED+M
Sbjct: 141 LGSLNSSMYTDDEAIEDNEDEM 162
Score = 39 (18.8 bits), Expect = 1.8e-46, Sum P(5) = 1.8e-46
Identities = 20/79 (25%), Positives = 34/79 (43%)
Query: 1138 RIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDE 1197
R+E D K T +A+S + D++ + AEK I + +S E
Sbjct: 1364 RLEEDNDEEQSHKKTKQAVS--YDEPDEDEIETM---REAEKSSDEEGIDSDKESDSDSE 1418
Query: 1198 EDAVDKMEDDMFLRCIEAN 1216
++ VD M + + +EAN
Sbjct: 1419 DEDVD-MNEQINKSIVEAN 1436
Score = 38 (18.4 bits), Expect = 1.3e-25, Sum P(4) = 1.3e-25
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 361 FGFRKRTLPHFIKDDYGPE 379
+G K + H + + YGPE
Sbjct: 786 YGASKYGIVHSLHEVYGPE 804
Score = 38 (18.4 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 1182 LRIRIMNSDDSKMQDEEDAVDKMEDD--MFLRCIEA 1215
L IR +N D SK+Q +D V +ED +F R + A
Sbjct: 394 LLIRDLNDDLSKLQ--KDKVS-LEDRRVIFSRLMNA 426
>UNIPROTKB|F1NJE0 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF04998 Pfam:PF05000 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:AADN02014782 EMBL:AADN02014783
IPI:IPI00819994 Ensembl:ENSGALT00000037150 OMA:QKKMARV
ArrayExpress:F1NJE0 Uniprot:F1NJE0
Length = 917
Score = 365 (133.5 bits), Expect = 3.2e-44, Sum P(3) = 3.2e-44
Identities = 82/189 (43%), Positives = 113/189 (59%)
Query: 272 EDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG-SAKKSLTEYNNLKAM 330
EDV Q AH + + N + F+ +VN N+ +S E NNL+ M
Sbjct: 42 EDVQGKWQDAH-LCKDQRDFNMVDLKFKEEVNNYNNEVNKVCMPFGLHRSFPE-NNLQLM 99
Query: 331 VVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLA 390
V +G+KGS +N Q+ +GQ +EG+R P ++LP F D+ P S GFV +L
Sbjct: 100 VQSGAKGSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLT 159
Query: 391 GLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR--LIKAMESVMVHYDCTVRNSVGQLI 448
G+ PSEFFFH M GREGL+DTAVKT+ +GY+QR +IK +E ++V YD TVR+S G ++
Sbjct: 160 GIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRNRCIIKHLEGLVVQYDLTVRDSDGSVV 219
Query: 449 QLRYGEDGL 457
Q YGEDGL
Sbjct: 220 QFLYGEDGL 228
Score = 203 (76.5 bits), Expect = 3.2e-44, Sum P(3) = 3.2e-44
Identities = 50/156 (32%), Positives = 84/156 (53%)
Query: 1244 RIIITESGEFKAIADWLLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKS 1302
R ++ ES K + +L T+G +L ++ D+ D R +SNDI + + GIE+ +
Sbjct: 758 RCLLNESTNEKGEKELILHTEGINLAELFRYSDILDLNRLYSNDIHAMAKNYGIESALRV 817
Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1362
V KE+ V YG+ V+ RHL+L+ D M +G + R GI + + L + +FE +
Sbjct: 818 VIKEIKDVFAVYGIVVDPRHLSLVADYMCFEGVYKPMNRFGI-QSSSSPLQQMTFETSYK 876
Query: 1363 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1398
L +A D +R S +++G++ + GTG FDL
Sbjct: 877 FLKEATMMGAHDELRSPSACLVLGKVVKGGTGLFDL 912
Score = 192 (72.6 bits), Expect = 4.9e-26, Sum P(3) = 4.9e-26
Identities = 38/74 (51%), Positives = 50/74 (67%)
Query: 1012 IACV-GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 1070
I+C+ GQ +EG+R P ++LP F D+ P S GFV +L G+ PSEFFFH M G
Sbjct: 114 ISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAG 173
Query: 1071 REGLIDTAVKTAET 1084
REGL+DTAVKT+ +
Sbjct: 174 REGLVDTAVKTSRS 187
Score = 150 (57.9 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 44/146 (30%), Positives = 74/146 (50%)
Query: 742 GESNVVLPC---NLMEVIF---ILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQ 795
GE ++L NL E+ IL +L+ N+ + + K + S + V KE+ V
Sbjct: 769 GEKELILHTEGINLAELFRYSDILDLNRLYSND-IHAMAKNYGIESALRVVIKEIKDVFA 827
Query: 796 FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE 855
YG+ V+ RHL+L+ D M +G + R GI + + L + +FE + L +A
Sbjct: 828 VYGIVVDPRHLSLVADYMCFEGVYKPMNRFGI-QSSSSPLQQMTFETSYKFLKEATMMGA 886
Query: 856 ADPMRGVSENIIMGQLPRMGTGCFDL 881
D +R S +++G++ + GTG FDL
Sbjct: 887 HDELRSPSACLVLGKVVKGGTGLFDL 912
Score = 111 (44.1 bits), Expect = 1.1e-17, Sum P(3) = 1.1e-17
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 592 GYIQRR--LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL
Sbjct: 188 GYLQRNRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 228
Score = 96 (38.9 bits), Expect = 4.3e-33, Sum P(3) = 4.3e-33
Identities = 25/78 (32%), Positives = 39/78 (50%)
Query: 514 LTSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 573
L V KE+ V YG+ V+ RHL+L+ D M +G + R GI + + L + +FE
Sbjct: 815 LRVVIKEIKDVFAVYGIVVDPRHLSLVADYMCFEGVYKPMNRFGI-QSSSSPLQQMTFET 873
Query: 574 TVDVLMDAAAHAEADPMR 591
+ L +A D +R
Sbjct: 874 SYKFLKEATMMGAHDELR 891
Score = 49 (22.3 bits), Expect = 4.9e-26, Sum P(3) = 4.9e-26
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 250 IGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDA 309
I D + P+ + IKK+ + IEV++ A N+ E + ++ +++ + D
Sbjct: 1 IEDILVKPEADRKRHKIIKKSSQCGIEVVRAALNLP-ETSSCEDVQGKWQDA--HLCKDQ 57
Query: 310 RD--KTGGSAKKSLTEYNN 326
RD K+ + YNN
Sbjct: 58 RDFNMVDLKFKEEVNNYNN 76
Score = 44 (20.5 bits), Expect = 3.2e-44, Sum P(3) = 3.2e-44
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 204 IGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNM 238
I D + P+ + IKK+ + IEV++ A N+
Sbjct: 1 IEDILVKPEADRKRHKIIKKSSQCGIEVVRAALNL 35
Score = 41 (19.5 bits), Expect = 4.5e-10, Sum P(3) = 4.5e-10
Identities = 11/62 (17%), Positives = 28/62 (45%)
Query: 293 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 352
++ +TFE+ V +N K+ G + + LK ++ + S + + + + Q
Sbjct: 362 SVSETFESGVEDYINKRECKSRGGCMQPALSSDRLKDLLYLKWQRSLCDPGEAVGLLAAQ 421
Query: 353 NV 354
++
Sbjct: 422 SI 423
>UNIPROTKB|G4NBX7 [details] [associations]
symbol:MGG_01158 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
EMBL:CM001235 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0043581 GO:GO:0003899
KO:K02999 PANTHER:PTHR19376:SF11 RefSeq:XP_003717763.1
ProteinModelPortal:G4NBX7 EnsemblFungi:MGG_01158T0 GeneID:2675173
KEGG:mgr:MGG_01158 Uniprot:G4NBX7
Length = 1719
Score = 327 (120.2 bits), Expect = 1.9e-42, Sum P(3) = 1.9e-42
Identities = 62/134 (46%), Positives = 94/134 (70%)
Query: 325 NNLKAMVVAGSKGSNINISQVIAC-VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGF 383
N ++AM ++G+KG +N + +I+C +GQQ +EG+R+P ++LP F + + G+
Sbjct: 941 NQMQAMTISGAKGGQVN-ANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFETDIRAGGY 999
Query: 384 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNS 443
+ N +L G+ P E++FH M GREGLIDTAVKT+ +GY+QR LIK ME + + YD +VR++
Sbjct: 1000 IVNRFLTGIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLEIGYDNSVRDA 1059
Query: 444 VGQLIQLRYGEDGL 457
G L+Q YGEDGL
Sbjct: 1060 DGSLVQFLYGEDGL 1073
Score = 196 (74.1 bits), Expect = 1.9e-42, Sum P(3) = 1.9e-42
Identities = 43/144 (29%), Positives = 76/144 (52%)
Query: 1260 LLETDGTSLMKVLSERD-VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1318
L+ T G++L + ++P R +ND+ + ++ G+EA R ++ +E+ V + + + V
Sbjct: 1566 LVHTAGSNLRAMQQYGSFINPNRISTNDVAAVLEIYGVEACRANIIRELRAVFESHAITV 1625
Query: 1319 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1378
+ RHL L+ D MT G R G++ + + SFE T+ L DA + D +
Sbjct: 1626 DNRHLNLIADHMTRSGGFTPFNRMGLSG-NVSPFTKMSFETTLAFLKDAVLDGDWDDLST 1684
Query: 1379 VSENIIMGQLPRMGTGCFDLLLDA 1402
S ++MG+L +GTG FD+ A
Sbjct: 1685 PSGRLVMGRLGHVGTGAFDVFTQA 1708
Score = 186 (70.5 bits), Expect = 1.8e-27, Sum P(3) = 1.8e-27
Identities = 45/124 (36%), Positives = 67/124 (54%)
Query: 1009 AQVIAC-VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
A +I+C +GQQ +EG+R+P ++LP F + + G++ N +L G+ P E++FH
Sbjct: 958 ANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFETDIRAGGYIVNRFLTGIRPQEYYFHH 1017
Query: 1068 MGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDF 1127
M GREGLIDTAVKT+ + + L + I YD N+V D V Y
Sbjct: 1018 MAGREGLIDTAVKTSRSGYLQRCLIKGMEGLEIGYD----NSVRDADGSLVQFLYGEDGL 1073
Query: 1128 DPTR 1131
D T+
Sbjct: 1074 DVTK 1077
Score = 145 (56.1 bits), Expect = 3.9e-37, Sum P(3) = 3.9e-37
Identities = 34/111 (30%), Positives = 57/111 (51%)
Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
+I V + R ++ +E+ V + + + V+ RHL L+ D MT G R G++ +
Sbjct: 1599 EIYGVEACRANIIRELRAVFESHAITVDNRHLNLIADHMTRSGGFTPFNRMGLSG-NVSP 1657
Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDA 885
+ SFE T+ L DA + D + S ++MG+L +GTG FD+ A
Sbjct: 1658 FTKMSFETTLAFLKDAVLDGDWDDLSTPSGRLVMGRLGHVGTGAFDVFTQA 1708
Score = 114 (45.2 bits), Expect = 4.8e-20, Sum P(3) = 4.8e-20
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR LIK ME + + YD +VR++ G L+Q YGEDGL
Sbjct: 1035 GYLQRCLIKGMEGLEIGYDNSVRDADGSLVQFLYGEDGL 1073
Score = 89 (36.4 bits), Expect = 2.6e-31, Sum P(3) = 2.6e-31
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 516 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 575
++ +E+ V + + + V+ RHL L+ D MT G R G++ + + SFE T+
Sbjct: 1609 NIIRELRAVFESHAITVDNRHLNLIADHMTRSGGFTPFNRMGLSG-NVSPFTKMSFETTL 1667
Query: 576 DVLMDAAAHAEADPM 590
L DA + D +
Sbjct: 1668 AFLKDAVLDGDWDDL 1682
Score = 86 (35.3 bits), Expect = 1.9e-42, Sum P(3) = 1.9e-42
Identities = 25/123 (20%), Positives = 47/123 (38%)
Query: 92 PCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGP-YQW-ISPGDTKVVVEHGS 149
P I+KPK WTGKQV + ++ N+ + P + W + + +V+ G
Sbjct: 733 PAIIKPKARWTGKQVITTVLR-NIRPLDCGDLWMTGKTQVPAHAWGVHSEEGQVLFRDGE 791
Query: 150 LLMGIXXXXXXXXXXXXXXHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIA 209
+ GI H G + G+ + ++ +L + + G+ D
Sbjct: 792 FISGILDKAQLGPSSGGLVHAVHEVYGPAIAGKLLSAMGRLLTRYLNMRAFTCGMDDLKL 851
Query: 210 DPQ 212
P+
Sbjct: 852 TPE 854
Score = 46 (21.3 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
Identities = 24/89 (26%), Positives = 36/89 (40%)
Query: 205 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLE---------PTPGHSIGI---GD 252
GD AD Q + +D +VIQ+ + E P P S + GD
Sbjct: 1405 GDATADKQKANRSEAVSYGPNDDDDDVIQRQQEQEAEFEDEGLGGSPPPESSKNVTAGGD 1464
Query: 253 TIADPQTYLEIQ-MAIKKAKEDVIEVIQK 280
DP ++E+ +A KAK+ + V K
Sbjct: 1465 D--DPHMHMELDDVAQAKAKDRELRVRDK 1491
Score = 45 (20.9 bits), Expect = 3.1e-23, Sum P(3) = 3.1e-23
Identities = 20/76 (26%), Positives = 30/76 (39%)
Query: 302 VNRILNDARDKTGGSAKKSLTEYNNLKAMVVAG-----SKGSNINISQVIACVGQQNVEG 356
VN ++++ + T G+A K+L E K G G +N + N+E
Sbjct: 449 VNTLIDNTKSPTQGAAAKALEEGIKQKLEKKEGLFRKNMMGKRVNYAARSVISPDPNIET 508
Query: 357 KRI---PFGFRKRTLP 369
I P RK T P
Sbjct: 509 NEIGVPPVFARKLTYP 524
>UNIPROTKB|H9L2Z3 [details] [associations]
symbol:H9L2Z3 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008811 "chloramphenicol O-acetyltransferase activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR001707 InterPro:IPR007066
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
InterPro:IPR018372 Pfam:PF00302 Pfam:PF04983 Pfam:PF04998
Pfam:PF05000 ProDom:PD002660 PROSITE:PS00100 SMART:SM01059
GO:GO:0005634 Gene3D:3.30.559.10 InterPro:IPR023213 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0003899 PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 GO:GO:0008811 EMBL:AADN02030152
EMBL:AADN02030153 EMBL:AADN02030154 Ensembl:ENSGALT00000036066
OMA:INKRELH Uniprot:H9L2Z3
Length = 533
Score = 369 (135.0 bits), Expect = 3.7e-38, Sum P(3) = 3.7e-38
Identities = 76/168 (45%), Positives = 105/168 (62%)
Query: 291 GNTLRQTFENQVNRILNDARDKTGG-SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACV 349
G + F+ +VN N+ +S E NNL+ MV +G+KGS +N Q+ +
Sbjct: 250 GGAVDLKFKEEVNNYNNEVNKVCMPFGLHRSFPE-NNLQLMVQSGAKGSTVNTVQISCLL 308
Query: 350 GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLI 409
GQ +EG+R P ++LP F D+ P S GFV +L G+ PSEFFFH M GREGL+
Sbjct: 309 GQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLV 368
Query: 410 DTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
DTAVKT+ +GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL
Sbjct: 369 DTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 416
Score = 193 (73.0 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 40/93 (43%), Positives = 56/93 (60%)
Query: 1012 IACV-GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 1070
I+C+ GQ +EG+R P ++LP F D+ P S GFV +L G+ PSEFFFH M G
Sbjct: 304 ISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAG 363
Query: 1071 REGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
REGL+DTAVKT+ + + + + + YD
Sbjct: 364 REGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 396
Score = 122 (48.0 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 42/152 (27%), Positives = 80/152 (52%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLC---GEAVEHQRIDTVALSHK 648
GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL + ++ ++ +A +++
Sbjct: 378 GYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPEQFPFIADNYE 437
Query: 649 -KFEDKYRFDPSNERQLRRIFN-EDVLRELMGSGDVISELEKEMVDHFSWKQLR--RIFN 704
+ +KYR + ++ + L + + + S V E + D+ + ++L F
Sbjct: 438 VEHLNKYRSESASSKGLIVTMDRQSISNSYFAS--VSETFESGVEDYINKRELHSGEAFG 495
Query: 705 EDVLRELMGSGDVISELEKEWEK-LCEDREAL 735
V +L D+ L +W++ LC+ EA+
Sbjct: 496 LSVPSKLK---DL---LYLKWQRSLCDPGEAV 521
Score = 113 (44.8 bits), Expect = 3.7e-38, Sum P(3) = 3.7e-38
Identities = 32/123 (26%), Positives = 52/123 (42%)
Query: 65 MHGSARNQEQMMNILMFLPIWD--GKMPQ--PCILKPKPLWTGKQVFSLIIPGNVNMTRT 120
+ G +EQ M L++ + D G++ P I+KP+ LWTGKQV S ++ +
Sbjct: 50 IRGCFFTREQYME-LVYRGLTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENHV 108
Query: 121 HSTHPDDEDSGPYQWI-SPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEV 179
G W+ P ++ V++ G LL G+ H C+ G E
Sbjct: 109 PLNLTGKAKIGGKAWMRGPANSNVIIRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGET 168
Query: 180 CGR 182
G+
Sbjct: 169 SGK 171
Score = 40 (19.1 bits), Expect = 3.7e-38, Sum P(3) = 3.7e-38
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 714 SGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVIFILQRWK 763
S + + + +E ED RE+ S + +P L +++++ +W+
Sbjct: 464 SNSYFASVSETFESGVEDYINKRELHSGEAFGLSVPSKLKDLLYL--KWQ 511
>UNIPROTKB|H9L2Z0 [details] [associations]
symbol:H9L2Z0 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007066 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF04983 Pfam:PF04998 Pfam:PF05000
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
Ensembl:ENSGALT00000036063 Uniprot:H9L2Z0
Length = 517
Score = 369 (135.0 bits), Expect = 3.7e-38, Sum P(2) = 3.7e-38
Identities = 77/182 (42%), Positives = 113/182 (62%)
Query: 319 KSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGP 378
+S E NNL+ MV +G+KGS +N Q+ +GQ +EG+R P ++LP F D+ P
Sbjct: 275 RSFPE-NNLQLMVQSGAKGSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSP 333
Query: 379 ESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDC 438
S GFV +L G+ PSEFFFH M GREGL+DTAVKT+ +GY+QR +IK +E ++V YD
Sbjct: 334 SSGGFVTGRFLTGIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDL 393
Query: 439 TVRNSVGQLIQLRYGEDGLC---GEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLRNV 495
TVR+S G ++Q YGEDGL + ++ ++ +A +++ + Y D R L+
Sbjct: 394 TVRDSDGSVVQFLYGEDGLDIPKTQFLQPEQFPFIADNYELLKMWYELDEKKRRKYLKRP 453
Query: 496 SS 497
S
Sbjct: 454 DS 455
Score = 196 (74.1 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 58/174 (33%), Positives = 87/174 (50%)
Query: 1012 IACV-GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 1070
I+C+ GQ +EG+R P ++LP F D+ P S GFV +L G+ PSEFFFH M G
Sbjct: 300 ISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAG 359
Query: 1071 REGLIDTAVKTAETVNVLVFLFQVTANTAIYYD---PDPQNTVIP----EDQ-EFVNVYY 1122
REGL+DTAVKT+ + + + + + YD D +V+ ED + +
Sbjct: 360 REGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQF 419
Query: 1123 EMPDFDPTRISPW-LLRI--ELD----RKRMTDKKLTMEAISEKINAGFGDDLN 1169
P+ P + LL++ ELD RK + ++SE +G D +N
Sbjct: 420 LQPEQFPFIADNYELLKMWYELDEKKRRKYLKRPDSYFASVSETFESGVEDYIN 473
Score = 122 (48.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLC---GEAVEHQRIDTVALSHK 648
GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL + ++ ++ +A +++
Sbjct: 374 GYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPEQFPFIADNYE 433
Query: 649 KFEDKYRFDPSNERQ-LRR 666
+ Y D R+ L+R
Sbjct: 434 LLKMWYELDEKKRRKYLKR 452
Score = 108 (43.1 bits), Expect = 3.7e-38, Sum P(2) = 3.7e-38
Identities = 37/153 (24%), Positives = 62/153 (40%)
Query: 65 MHGSARNQEQMMNILMFLPIWD--GKMPQ--PCILKPKPLWTGKQVFSLIIPGNVNMTRT 120
+ G +EQ M L++ + D G++ P I+KP+ LWTGKQV S ++ +
Sbjct: 50 IRGCFFTREQYME-LVYRGLTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENHV 108
Query: 121 HSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVC 180
G W + KV++ G LL G+ H C+ G E
Sbjct: 109 PLNLTGKAKIGGKAWGK--NEKVIIRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETS 166
Query: 181 GRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQT 213
G+ + + +L L + G+ + P+T
Sbjct: 167 GKVLPCLGRLFTAYLQLYQYMSGVLAALNLPET 199
>UNIPROTKB|H9L2Z1 [details] [associations]
symbol:H9L2Z1 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007066 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF04983 Pfam:PF04998 Pfam:PF05000
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
Ensembl:ENSGALT00000036064 Uniprot:H9L2Z1
Length = 522
Score = 373 (136.4 bits), Expect = 6.0e-38, Sum P(2) = 6.0e-38
Identities = 82/187 (43%), Positives = 113/187 (60%)
Query: 272 EDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG-SAKKSLTEYNNLKAM 330
EDV Q AH + + N + F+ +VN N+ +S E NNL+ M
Sbjct: 224 EDVQGKWQDAH-LCKDQRDFNMVDLKFKEEVNNYNNEVNKVCMPFGLHRSFPE-NNLQLM 281
Query: 331 VVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLA 390
V +G+KGS +N Q+ +GQ +EG+R P ++LP F D+ P S GFV +L
Sbjct: 282 VQSGAKGSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLT 341
Query: 391 GLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQL 450
G+ PSEFFFH M GREGL+DTAVKT+ +GY+QR +IK +E ++V YD TVR+S G ++Q
Sbjct: 342 GIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQF 401
Query: 451 RYGEDGL 457
YGEDGL
Sbjct: 402 LYGEDGL 408
Score = 193 (73.0 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 40/93 (43%), Positives = 56/93 (60%)
Query: 1012 IACV-GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 1070
I+C+ GQ +EG+R P ++LP F D+ P S GFV +L G+ PSEFFFH M G
Sbjct: 296 ISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAG 355
Query: 1071 REGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
REGL+DTAVKT+ + + + + + YD
Sbjct: 356 REGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 388
Score = 119 (46.9 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL
Sbjct: 370 GYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 408
Score = 102 (41.0 bits), Expect = 6.0e-38, Sum P(2) = 6.0e-38
Identities = 32/122 (26%), Positives = 50/122 (40%)
Query: 65 MHGSARNQEQMMNILMFLPIWD--GKMPQ--PCILKPKPLWTGKQVFSLIIPGNVNMTRT 120
+ G +EQ M L++ + D G++ P I+KP+ LWTGKQV S ++ +
Sbjct: 50 IRGCFFTREQYME-LVYRGLTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENHV 108
Query: 121 HSTHPDDEDSGPYQWISPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLELGHEVC 180
G W + KV++ G LL G+ H C+ G E
Sbjct: 109 PLNLTGKAKIGGKAWGK--NEKVIIRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETS 166
Query: 181 GR 182
G+
Sbjct: 167 GK 168
Score = 37 (18.1 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 737 EIFSSGESNVVLPC--NLMEVIFILQRWK 763
EI+ S VLPC L L R+K
Sbjct: 159 EIYGGETSGKVLPCLGRLFTAYLQLYRFK 187
>UNIPROTKB|H9L2Z2 [details] [associations]
symbol:H9L2Z2 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008811 "chloramphenicol O-acetyltransferase activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR001707 InterPro:IPR007066
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF04983 Pfam:PF04998 Pfam:PF05000 ProDom:PD002660
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
GO:GO:0008811 EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
Ensembl:ENSGALT00000036065 Uniprot:H9L2Z2
Length = 527
Score = 373 (136.4 bits), Expect = 2.6e-36, Sum P(3) = 2.6e-36
Identities = 82/187 (43%), Positives = 113/187 (60%)
Query: 272 EDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGG-SAKKSLTEYNNLKAM 330
EDV Q AH + + N + F+ +VN N+ +S E NNL+ M
Sbjct: 231 EDVQGKWQDAH-LCKDQRDFNMVDLKFKEEVNNYNNEVNKVCMPFGLHRSFPE-NNLQLM 288
Query: 331 VVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLA 390
V +G+KGS +N Q+ +GQ +EG+R P ++LP F D+ P S GFV +L
Sbjct: 289 VQSGAKGSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLT 348
Query: 391 GLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQL 450
G+ PSEFFFH M GREGL+DTAVKT+ +GY+QR +IK +E ++V YD TVR+S G ++Q
Sbjct: 349 GIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQF 408
Query: 451 RYGEDGL 457
YGEDGL
Sbjct: 409 LYGEDGL 415
Score = 193 (73.0 bits), Expect = 2.7e-14, Sum P(3) = 2.7e-14
Identities = 40/93 (43%), Positives = 56/93 (60%)
Query: 1012 IACV-GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 1070
I+C+ GQ +EG+R P ++LP F D+ P S GFV +L G+ PSEFFFH M G
Sbjct: 303 ISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAG 362
Query: 1071 REGLIDTAVKTAETVNVLVFLFQVTANTAIYYD 1103
REGL+DTAVKT+ + + + + + YD
Sbjct: 363 REGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 395
Score = 119 (46.9 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL
Sbjct: 377 GYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 415
Score = 87 (35.7 bits), Expect = 2.6e-36, Sum P(3) = 2.6e-36
Identities = 40/163 (24%), Positives = 71/163 (43%)
Query: 65 MHGSARNQEQMMNILMFLPIWD--GKMPQ--PCILKPKPLWTGKQVFSLIIPGNVNMTRT 120
+ G +EQ M L++ + D G++ P I+KP+ LWTGKQV S ++ +N+
Sbjct: 50 IRGCFFTREQYME-LVYRGLTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLL---INIIPE 105
Query: 121 HSTHPDDEDSGPYQWI------SPGDTKVVVEHGSLLMGIXXXXXXXXXXXXXXHICFLE 174
+ H +G + + S +V++ G LL G+ H C+
Sbjct: 106 N--HVPLNLTGKAKLVVVFFLNSCFLFQVIIRSGELLCGVLDKAHFGSSAYGLVHCCYEI 163
Query: 175 LGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIAD-PQTYLE 216
G E G+ + + +L L H G+ +A P+ ++E
Sbjct: 164 YGGETSGKVLPCLGRLFTAYLQLY-HVACYGENLAYFPKGFIE 205
Score = 48 (22.0 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 966 NATLLFQCLVRS--TLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQVIACVGQ 1017
N+ LFQ ++RS LC L ++ S+ EI +V+ C+G+
Sbjct: 125 NSCFLFQVIIRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLPCLGR 178
Score = 39 (18.8 bits), Expect = 2.6e-36, Sum P(3) = 2.6e-36
Identities = 9/53 (16%), Positives = 22/53 (41%)
Query: 1262 ETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFY 1314
++DG+ + + E +D ++ +C + VL K+ + Q +
Sbjct: 400 DSDGSVVQFLYGEDGLDIPKSSGTSVCHCYTVLYFNVTLLKYRKKAPLLCQLW 452
Score = 39 (18.8 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 737 EIFSSGESNVVLPC--NLMEVIFILQRWKLWGNENLRFLCK 775
EI+ S VLPC L L +G ENL + K
Sbjct: 162 EIYGGETSGKVLPCLGRLFTAYLQLYHVACYG-ENLAYFPK 201
>UNIPROTKB|I3LQ53 [details] [associations]
symbol:I3LQ53 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000684 Pfam:PF05001 PROSITE:PS00115 GO:GO:0003677
GO:GO:0006366 GO:GO:0005665 GeneTree:ENSGT00700000104490
EMBL:FP565284 Ensembl:ENSSSCT00000030016 OMA:YAESDYL Uniprot:I3LQ53
Length = 543
Score = 356 (130.4 bits), Expect = 3.1e-29, P = 3.1e-29
Identities = 75/126 (59%), Positives = 85/126 (67%)
Query: 836 MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 895
M+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP
Sbjct: 1 MKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 60
Query: 896 LATXXXXXXXXXXXXXXXTPSSM---SPQMTPWAQ-STPAYNALM-SPGAAMTPGGPGFS 950
PS M SP MTPW Q +TPAY A S G+ MTPG GFS
Sbjct: 61 TNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFS 120
Query: 951 PSVAGE 956
PS A +
Sbjct: 121 PSAASD 126
Score = 262 (97.3 bits), Expect = 9.7e-19, P = 9.7e-19
Identities = 54/92 (58%), Positives = 62/92 (67%)
Query: 1353 MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 1412
M+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP
Sbjct: 1 MKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 60
Query: 1413 LATXXXXXXXXXXXXXXXTPSSIPG-PPAWYP 1443
PS + G PA P
Sbjct: 61 TNIPGLGAAGPTGMFFGSAPSPMGGISPAMTP 92
Score = 118 (46.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 21/26 (80%), Positives = 25/26 (96%)
Query: 567 MRCSFEETVDVLMDAAAHAEADPMRG 592
M+CSFEETVDVLM+AAAH E+DPM+G
Sbjct: 1 MKCSFEETVDVLMEAAAHGESDPMKG 26
Score = 64 (27.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T + SP ++ ++P Y+ G+ +P PG+SP+
Sbjct: 485 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 523
Score = 59 (25.8 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 914 TPSSMSPQMTPWAQSTPAYNALMSPGAAMTPGGPGFSPS 952
T S SP ++ S+P Y SP TP P +SPS
Sbjct: 366 TSPSYSPTSPSYSPSSPRYTP-QSP--TYTPSSPSYSPS 401
>UNIPROTKB|E1C4T2 [details] [associations]
symbol:POLR1A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR007081 InterPro:IPR015699 Pfam:PF04998 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:AADN02014782 EMBL:AADN02014783 IPI:IPI00576593
Ensembl:ENSGALT00000025424 ArrayExpress:E1C4T2 Uniprot:E1C4T2
Length = 745
Score = 203 (76.5 bits), Expect = 7.7e-25, Sum P(2) = 7.7e-25
Identities = 50/156 (32%), Positives = 84/156 (53%)
Query: 1244 RIIITESGEFKAIADWLLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKS 1302
R ++ ES K + +L T+G +L ++ D+ D R +SNDI + + GIE+ +
Sbjct: 586 RCLLNESTNEKGEKELILHTEGINLAELFRYSDILDLNRLYSNDIHAMAKNYGIESALRV 645
Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1362
V KE+ V YG+ V+ RHL+L+ D M +G + R GI + + L + +FE +
Sbjct: 646 VIKEIKDVFAVYGIVVDPRHLSLVADYMCFEGVYKPMNRFGI-QSSSSPLQQMTFETSYK 704
Query: 1363 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1398
L +A D +R S +++G++ + GTG FDL
Sbjct: 705 FLKEATMMGAHDELRSPSACLVLGKVVKGGTGLFDL 740
Score = 176 (67.0 bits), Expect = 7.7e-25, Sum P(2) = 7.7e-25
Identities = 34/58 (58%), Positives = 45/58 (77%)
Query: 402 MGGREGLIDTAVKTAETGYIQRR--LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 457
M GREGL+DTAVKT+ +GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL
Sbjct: 1 MAGREGLVDTAVKTSRSGYLQRNRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 58
Score = 150 (57.9 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
Identities = 44/146 (30%), Positives = 74/146 (50%)
Query: 742 GESNVVLPC---NLMEVIF---ILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQ 795
GE ++L NL E+ IL +L+ N+ + + K + S + V KE+ V
Sbjct: 597 GEKELILHTEGINLAELFRYSDILDLNRLYSND-IHAMAKNYGIESALRVVIKEIKDVFA 655
Query: 796 FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE 855
YG+ V+ RHL+L+ D M +G + R GI + + L + +FE + L +A
Sbjct: 656 VYGIVVDPRHLSLVADYMCFEGVYKPMNRFGI-QSSSSPLQQMTFETSYKFLKEATMMGA 714
Query: 856 ADPMRGVSENIIMGQLPRMGTGCFDL 881
D +R S +++G++ + GTG FDL
Sbjct: 715 HDELRSPSACLVLGKVVKGGTGLFDL 740
Score = 111 (44.1 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 592 GYIQRR--LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
GY+QR +IK +E ++V YD TVR+S G ++Q YGEDGL
Sbjct: 18 GYLQRNRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 58
Score = 96 (38.9 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 25/78 (32%), Positives = 39/78 (50%)
Query: 514 LTSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 573
L V KE+ V YG+ V+ RHL+L+ D M +G + R GI + + L + +FE
Sbjct: 643 LRVVIKEIKDVFAVYGIVVDPRHLSLVADYMCFEGVYKPMNRFGI-QSSSSPLQQMTFET 701
Query: 574 TVDVLMDAAAHAEADPMR 591
+ L +A D +R
Sbjct: 702 SYKFLKEATMMGAHDELR 719
Score = 65 (27.9 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 1068 MGGREGLIDTAVKTAET 1084
M GREGL+DTAVKT+ +
Sbjct: 1 MAGREGLVDTAVKTSRS 17
Score = 41 (19.5 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 11/62 (17%), Positives = 28/62 (45%)
Query: 293 TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ 352
++ +TFE+ V +N K+ G + + LK ++ + S + + + + Q
Sbjct: 192 SVSETFESGVEDYINKRECKSRGGCMQPALSSDRLKDLLYLKWQRSLCDPGEAVGLLAAQ 251
Query: 353 NV 354
++
Sbjct: 252 SI 253
>RGD|1305574 [details] [associations]
symbol:Polr3a "polymerase (RNA) III (DNA directed) polypeptide
A" species:10116 "Rattus norvegicus" [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=ISO] [GO:0045087 "innate immune response" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR007081
InterPro:IPR015700 Pfam:PF04998 RGD:1305574 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0086 GO:GO:0032549 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
PANTHER:PTHR19376:SF15 IPI:IPI00766228 EMBL:BC086344
UniGene:Rn.41904 ProteinModelPortal:Q5RK26 STRING:Q5RK26
UCSC:RGD:1305574 Genevestigator:Q5RK26 Uniprot:Q5RK26
Length = 491
Score = 264 (98.0 bits), Expect = 4.2e-19, P = 4.2e-19
Identities = 65/187 (34%), Positives = 101/187 (54%)
Query: 1218 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1277
L + +QGI + + +H+ + K++ FK + + G +L V++ V
Sbjct: 297 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------FKLLVE------GDNLRAVMATHGV 342
Query: 1278 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1337
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 343 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 402
Query: 1338 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1397
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 403 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 462
Query: 1398 LLLDAEK 1404
LL A +
Sbjct: 463 LLHKANR 469
Score = 197 (74.4 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 44/113 (38%), Positives = 66/113 (58%)
Query: 775 KIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 834
K + + + R ++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ +
Sbjct: 357 KTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESV 416
Query: 835 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 887
LM SFE+T D L DAA + D + GVSE IIMG +GTG F LL A +
Sbjct: 417 LMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANR 469
Score = 141 (54.7 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 574
T++ E+ + +G+ ++ RH+ LL D+MT KG ++ ITR G+ + LM SFE+T
Sbjct: 366 TTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKT 425
Query: 575 VDVLMDAAAHAEADPMRG 592
D L DAA + D + G
Sbjct: 426 ADHLFDAAYFGQKDSVCG 443
Score = 45 (20.9 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 301 QVNRILNDARDKTGGSAKKSLTEYNNLKA-MVVAGSKGS 338
+V+R + +++G K L E +NL+A M G KG+
Sbjct: 307 EVSRAVIHIDEQSGKEKFKLLVEGDNLRAVMATHGVKGT 345
>TAIR|locus:2015163 [details] [associations]
symbol:NRPD1A "nuclear RNA polymerase D1A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA;IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0031047 "gene silencing by RNA"
evidence=RCA;IMP] [GO:0000418 "DNA-directed RNA polymerase IV
complex" evidence=IDA;IPI] [GO:0007267 "cell-cell signaling"
evidence=RCA;IMP] [GO:0016246 "RNA interference" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0010495
"long-distance posttranscriptional gene silencing" evidence=IMP]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0035196 "production of miRNAs involved
in gene silencing by miRNA" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015801
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC011000
GO:GO:0003677 GO:GO:0007267 GO:GO:0006351 GO:GO:0005507
GO:GO:0048038 GO:GO:0009308 Gene3D:3.10.450.40 GO:GO:0030422
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0006346
EMBL:AC010795 EMBL:AY826515 EMBL:DQ020657 IPI:IPI00523111
PIR:D96655 RefSeq:NP_001185298.1 RefSeq:NP_176490.2
UniGene:At.36192 ProteinModelPortal:Q9LQ02 SMR:Q9LQ02
DIP:DIP-48679N STRING:Q9LQ02 PaxDb:Q9LQ02 PRIDE:Q9LQ02
EnsemblPlants:AT1G63020.1 EnsemblPlants:AT1G63020.2 GeneID:842605
KEGG:ath:AT1G63020 TAIR:At1g63020 eggNOG:COG0086
HOGENOM:HOG000083760 InParanoid:Q9LQ02 KO:K16250 OMA:HQHSLIA
PhylomeDB:Q9LQ02 ProtClustDB:CLSN2680546 Genevestigator:Q9LQ02
GO:GO:0000418 GO:GO:0010495 InterPro:IPR021602 Pfam:PF11523
Uniprot:Q9LQ02
Length = 1453
Score = 156 (60.0 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
Identities = 56/158 (35%), Positives = 74/158 (46%)
Query: 325 NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGF-RKRTL-----PHFI------ 372
N+ M AGSKG+ + Q C+G QN + FGF R+ T P+
Sbjct: 723 NSFLIMSKAGSKGNIGKLVQHSMCIGLQN-SAVSLSFGFPRELTCAAWNDPNSPLRGAKG 781
Query: 373 KDDYGPESR---GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 429
KD ES G +ENS+L GL P E F H++ R+ G + RRL+ M
Sbjct: 782 KDSTTTESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLP--GTLSRRLMFFM 839
Query: 430 ESVMVHYDCTVRNSVG-QLIQLRYGEDG----LCGEAV 462
+ YD TVRNS G QL+Q Y DG + GEA+
Sbjct: 840 RDIYAAYDGTVRNSFGNQLVQFTYETDGPVEDITGEAL 877
Score = 125 (49.1 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
Identities = 63/291 (21%), Positives = 122/291 (41%)
Query: 1132 ISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD 1191
+SPW+ + K + K+L+ E++ +N + N D + + +SDD
Sbjct: 977 LSPWVCHFHISEKVLKRKQLSAESVVSSLNEQY-KSRNRELKLDIVDLDIQNTNHCSSDD 1035
Query: 1192 SKMQDEE-----DAVDKMEDDMF----LRCIEANMLSDMTLQGIEAIGKV-YMHLPQTDS 1241
M+D+ V+ + + +R + L D ++G + I KV + + +
Sbjct: 1036 QAMKDDNVCITVTVVEASKHSVLELDAIRLVLIPFLLDSPVKGDQGIKKVNILWTDRPKA 1095
Query: 1242 KKRIIITESGEF--KAI--ADWLLETDGTSLMKV-LSERD-VDPVRTFSNDICEIFQVLG 1295
KR +GE K D T+L++ L D +D R+ ++I + V G
Sbjct: 1096 PKRNGNHLAGELYLKVTMYGDRGKRNCWTALLETCLPIMDMIDWGRSHPDNIRQCCSVYG 1155
Query: 1296 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ----DTGA 1351
I+A R + + + G + HL L+ D ++ G +A+ G ++Q T A
Sbjct: 1156 IDAGRSIFVANLESAVSDTGKEILREHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPA 1215
Query: 1352 -LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGC-FDLLL 1400
+ F + AA D ++G + + G++P GTG F++++
Sbjct: 1216 PFTQACFSSPSQCFLKAAKEGVRDDLQGSIDALAWGKVPGFGTGDQFEIII 1266
Score = 94 (38.1 bits), Expect = 2.4e-13, Sum P(3) = 2.4e-13
Identities = 33/170 (19%), Positives = 65/170 (38%)
Query: 765 WGN---ENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMA 821
WG +N+R C + + + R + + + G + HL L+ D ++ G +A
Sbjct: 1139 WGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKEILREHLLLVADSLSVTGEFVA 1198
Query: 822 ITRHGINRQ----DTGA-LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGT 876
+ G ++Q T A + F + AA D ++G + + G++P GT
Sbjct: 1199 LNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRDDLQGSIDALAWGKVPGFGT 1258
Query: 877 GC-FDLLLDAEKCKDGIEIPLATXXXXXXXXXXXXXXXTPSSMSPQMTPW 925
G F++++ + G P+ P S + P+
Sbjct: 1259 GDQFEIIISPKV--HGFTTPVDVYDLLSSTKTMRRTNSAPKSDKATVQPF 1306
Score = 92 (37.4 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 28/71 (39%), Positives = 38/71 (53%)
Query: 570 SFEETVDVLMDAAAHAEADPMRGYIQRRLIKAMESVMVHYDCTVRNSVG-QLIQLRYGED 628
SF +V D++ AD + G + RRL+ M + YD TVRNS G QL+Q Y D
Sbjct: 809 SFVHSV-TSRDSSFSGNAD-LPGTLSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETD 866
Query: 629 G----LCGEAV 635
G + GEA+
Sbjct: 867 GPVEDITGEAL 877
Score = 79 (32.9 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 71 NQEQMMNILMFLPIWDGKMPQPCILK--P---KPLWTGKQVFSLIIPGNVNMT 118
N+ QM + M+ P ++P P I+K P +P WTG Q+F ++ P + T
Sbjct: 509 NRAQMQQLQMYCPF---QLPPPAIIKASPSSTEPQWTGMQLFGMLFPPGFDYT 558
Score = 72 (30.4 bits), Expect = 6.4e-08, Sum P(3) = 6.4e-08
Identities = 40/134 (29%), Positives = 56/134 (41%)
Query: 956 EDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWL--VGEIENRFQQAQVIA 1013
E Q S +E A F+ R + +A Y S +F + G N + Q
Sbjct: 689 ERQKSATLSELAVSAFKDAYRDV---QALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSM 745
Query: 1014 CVGQQNVEGKRIPFGF-RKRTL-----PHFI------KDDYGPESR---GFVENSYLAGL 1058
C+G QN + FGF R+ T P+ KD ES G +ENS+L GL
Sbjct: 746 CIGLQN-SAVSLSFGFPRELTCAAWNDPNSPLRGAKGKDSTTTESYVPYGVIENSFLTGL 804
Query: 1059 TPSEFFFHAMGGRE 1072
P E F H++ R+
Sbjct: 805 NPLESFVHSVTSRD 818
Score = 53 (23.7 bits), Expect = 3.4e-09, Sum P(3) = 3.4e-09
Identities = 16/71 (22%), Positives = 31/71 (43%)
Query: 1570 ISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGD---DLNTPLSPTDKKLTMEAISEKI 1626
+SPW+ + K + K+L+ E++ +N + +L + D + T S+
Sbjct: 977 LSPWVCHFHISEKVLKRKQLSAESVVSSLNEQYKSRNRELKLDIVDLDIQNTNHCSSD-- 1034
Query: 1627 NAGFGDDLNCI 1637
+ DD CI
Sbjct: 1035 DQAMKDDNVCI 1045
Score = 49 (22.3 bits), Expect = 8.5e-09, Sum P(3) = 8.5e-09
Identities = 16/64 (25%), Positives = 27/64 (42%)
Query: 536 HLALLCDVMTAKGHLMAITRHGINRQ----DTGA-LMRCSFEETVDVLMDAAAHAEADPM 590
HL L+ D ++ G +A+ G ++Q T A + F + AA D +
Sbjct: 1182 HLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRDDL 1241
Query: 591 RGYI 594
+G I
Sbjct: 1242 QGSI 1245
Score = 42 (19.8 bits), Expect = 9.8e-13, Sum P(3) = 9.8e-13
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 81 FLPIWDGKMPQPCILKPKPLWTGKQVFSLII 111
FLP D + + C+ + + T QV++L++
Sbjct: 172 FLP-QDSNIDESCLKPTRRIITHAQVYALLL 201
>UNIPROTKB|Q6NX41 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AC113189 GO:GO:0003899 IPI:IPI00031627
UniGene:Hs.270017 HGNC:HGNC:9187 ChiTaRS:POLR2A EMBL:BC067295
SMR:Q6NX41 STRING:Q6NX41 Ensembl:ENST00000572844 UCSC:uc002ghe.3
HOVERGEN:HBG097653 Uniprot:Q6NX41
Length = 566
Score = 170 (64.9 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 31/44 (70%), Positives = 39/44 (88%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 1532
++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++V
Sbjct: 515 IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERV 558
Score = 97 (39.2 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 30 EESIILGMDPKFARPDWMXXXXXXXXXXXXXXXXXMHGSARNQEQMMNIL 79
EE +LGM+P++ARP+WM M GSARNQ+ + + L
Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL 280
Score = 37 (18.1 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 174 ELGHEVCGRFYGNIQ 188
E GH CGR+ I+
Sbjct: 178 EKGHGGCGRYQPRIR 192
>TIGR_CMR|NSE_0677 [details] [associations]
symbol:NSE_0677 "DNA-directed RNA polymerase, beta'
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 TIGRFAMs:TIGR02386 OMA:VIAEWDP
RefSeq:YP_506555.1 ProteinModelPortal:Q2GD91 SMR:Q2GD91
STRING:Q2GD91 PRIDE:Q2GD91 GeneID:3931848 KEGG:nse:NSE_0677
PATRIC:22681373 BioCyc:NSEN222891:GHFU-691-MONOMER Uniprot:Q2GD91
Length = 1375
Score = 114 (45.2 bits), Expect = 3.0e-13, Sum P(5) = 3.0e-13
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 396 EFFFHAMGGREGLIDTAVKTAETGYIQRRLIK-AMESVMVHYDCTVRNSV 444
E+F G R+GL DTA+KTA +GY+ RRL+ A +S++V DC N +
Sbjct: 754 EYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDSIIVEEDCGSSNGL 803
Score = 106 (42.4 bits), Expect = 3.0e-13, Sum P(5) = 3.0e-13
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 1336 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGC 1395
L+ ITR + Q + SF+ET VL +AA + D +RG+ ENII G+L +G G
Sbjct: 1289 LLGITRASL--QTESFISAASFQETTKVLTEAAVAGKVDRLRGLKENIIAGRLLPVGAGY 1346
Query: 1396 F 1396
F
Sbjct: 1347 F 1347
Score = 106 (42.4 bits), Expect = 3.2e-09, Sum P(4) = 3.2e-09
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 819 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGC 878
L+ ITR + Q + SF+ET VL +AA + D +RG+ ENII G+L +G G
Sbjct: 1289 LLGITRASL--QTESFISAASFQETTKVLTEAAVAGKVDRLRGLKENIIAGRLLPVGAGY 1346
Query: 879 F 879
F
Sbjct: 1347 F 1347
Score = 93 (37.8 bits), Expect = 3.0e-13, Sum P(5) = 3.0e-13
Identities = 26/97 (26%), Positives = 53/97 (54%)
Query: 1241 SKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV----DPVRTFSNDICEIFQVLGI 1296
SK+++I+ + + I ++L+ G L ++SE D +P+ D+ EI +VLG+
Sbjct: 1153 SKRKVIVRSREDKERIYEYLVPK-GRHL--IVSEGDFIRRGEPLMDGDPDLHEILRVLGL 1209
Query: 1297 EAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 1333
EA+ + + E+ V + G+ +N +H+ ++ M K
Sbjct: 1210 EALAEYMISEIQRVYRLQGVKINNKHIEVIIRKMLQK 1246
Score = 69 (29.3 bits), Expect = 3.0e-13, Sum P(5) = 3.0e-13
Identities = 30/118 (25%), Positives = 51/118 (43%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEV-IQKAHNMDLEPTPGNTLRQTFENQVN 303
G S G D + P T E +++A E+V E Q + + N + ++ +
Sbjct: 628 GISFGKDDMVVPP-TKSE---HVRRANEEVKEYEFQYQEGLITKHEKYNKVVDAWQKCTD 683
Query: 304 RILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG-QQNVEGKRIP 360
+ D D G S +S+ E N++ M +G++GS I Q+ G G+ IP
Sbjct: 684 LVAKDMMD--GISGYESVAEMNSIFMMAQSGARGSAAQIKQLAGMRGLMAKPSGEIIP 739
Score = 64 (27.6 bits), Expect = 0.00035, Sum P(4) = 0.00035
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 550 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 592
L+ ITR + Q + SF+ET VL +AA + D +RG
Sbjct: 1289 LLGITRASL--QTESFISAASFQETTKVLTEAAVAGKVDRLRG 1329
Score = 60 (26.2 bits), Expect = 2.1e-08, Sum P(4) = 2.1e-08
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 1062 EFFFHAMGGREGLIDTAVKTAET 1084
E+F G R+GL DTA+KTA +
Sbjct: 754 EYFNSTHGARKGLADTALKTANS 776
Score = 47 (21.6 bits), Expect = 3.2e-09, Sum P(4) = 3.2e-09
Identities = 24/116 (20%), Positives = 53/116 (45%)
Query: 707 VLRELMGSGDVISELEKEWEKLC----EDREALRE-IFSSGESNVVLPCNLMEVIFILQR 761
V+ E+ G + + K K+ ED+E + E + G +V E FI +
Sbjct: 1136 VISEIDGYVEFAKDYYKSKRKVIVRSREDKERIYEYLVPKGRHLIV-----SEGDFIRRG 1190
Query: 762 WKLW-GNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 816
L G+ +L + +++ + ++ + + E+ V + G+ +N +H+ ++ M K
Sbjct: 1191 EPLMDGDPDLHEILRVLGLEALAEYMISEIQRVYRLQGVKINNKHIEVIIRKMLQK 1246
Score = 43 (20.2 bits), Expect = 1.1e-10, Sum P(5) = 1.1e-10
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 176 GHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKE 226
GH F I + + L G S G D + P ++ A ++ KE
Sbjct: 605 GHGKTVEFADGIMELGFRYATLSGISFGKDDMVVPPTKSEHVRRANEEVKE 655
Score = 40 (19.1 bits), Expect = 3.0e-13, Sum P(5) = 3.0e-13
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 679 SGDVIS-ELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEKE 724
SG V + K+ V + + N DV++ +GDVI+++ KE
Sbjct: 1066 SGSVAKCQYSKDAVYLLPLGAILNVSNGDVVK----AGDVIAKITKE 1108
Score = 37 (18.1 bits), Expect = 3.1e-08, Sum P(4) = 3.1e-08
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 520 EMNTVLQFYGLYVNYRHLALLCDVMTAK 547
E+ V + G+ +N +H+ ++ M K
Sbjct: 1219 EIQRVYRLQGVKINNKHIEVIIRKMLQK 1246
>UNIPROTKB|F1LQN7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF05000 SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 PANTHER:PTHR19376:SF11 IPI:IPI00389616
Ensembl:ENSRNOT00000013417 ArrayExpress:F1LQN7 Uniprot:F1LQN7
Length = 1011
Score = 214 (80.4 bits), Expect = 4.8e-13, P = 4.8e-13
Identities = 93/348 (26%), Positives = 146/348 (41%)
Query: 65 MHGSARNQEQMMNILMFLPIWD--G--KMPQPCILKPKPLWTGKQVFSL----IIPGN-- 114
+ G +EQ M L++ + D G K+ P ILKP PLWTGKQV S IIP +
Sbjct: 671 IRGCFFTREQYME-LVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYT 729
Query: 115 -VNMT---RTHSTHPDDEDSGPYQWISPG---DTKVVVEHGSLLMGIXXXXXXXXXXXXX 167
+N+T + S E P P +++V++ G LL G+
Sbjct: 730 PLNLTGKAKIGSKAWVKEKPRPVPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 789
Query: 168 XHICFLELGHEVCGRFYGNIQTVVNNWL-LLEGHSIGIGDTIADPQTYLEIQMAIKKAKE 226
H C+ G E GR + + +L L G ++G+ D + P + Q I+++ +
Sbjct: 790 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVMRQRIIEESTQ 849
Query: 227 DVIEVIQKAHNMDLEPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 286
++ A N+ P D EIQ K Q AH +
Sbjct: 850 CGPRAVRAALNL---PEAAS--------CD-----EIQ-----GKW------QDAH-LGK 881
Query: 287 EPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVI 346
+ N + F+ +VN N+ NNL+ MV +G+KGS +N Q+
Sbjct: 882 DQRDFNMIDMKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQIS 941
Query: 347 ACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP 394
+GQ +EG+R P ++LP F ++ P + GFV +L G+ P
Sbjct: 942 CLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRP 989
>UNIPROTKB|P37871 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0046677
GO:GO:0006351 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
EMBL:D64127 EMBL:L24376 KO:K03046 ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 HOGENOM:HOG000218387 EMBL:L43593 PIR:G69698
RefSeq:NP_387989.2 ProteinModelPortal:P37871 SMR:P37871
DIP:DIP-49022N IntAct:P37871 PRIDE:P37871
EnsemblBacteria:EBBACT00000003012 GeneID:935977 KEGG:bsu:BSU01080
PATRIC:18971725 GenoList:BSU01080 BioCyc:BSUB:BSU01080-MONOMER
Uniprot:P37871
Length = 1199
Score = 129 (50.5 bits), Expect = 3.7e-10, Sum P(5) = 3.7e-10
Identities = 33/95 (34%), Positives = 54/95 (56%)
Query: 384 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHY-DC-TVR 441
+++S+ GLT E+F G R+GL DTA+KTA++GY+ RRL+ + V++ DC T R
Sbjct: 763 IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIIRETDCGTDR 822
Query: 442 NSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKK 476
+ + L+ G + + E +E + I A K
Sbjct: 823 GILAK--PLKEGTETI--ERLEERLIGRFARKQVK 853
Score = 101 (40.6 bits), Expect = 3.7e-10, Sum P(5) = 3.7e-10
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 1331 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 1390
T + L+ IT+ + + L SF+ET VL DAA + D + G+ EN+I+G+L
Sbjct: 1115 TGRPVLLGITKASL--ETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVP 1172
Query: 1391 MGTG 1394
GTG
Sbjct: 1173 AGTG 1176
Score = 101 (40.6 bits), Expect = 2.0e-09, Sum P(5) = 2.0e-09
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 814 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 873
T + L+ IT+ + + L SF+ET VL DAA + D + G+ EN+I+G+L
Sbjct: 1115 TGRPVLLGITKASL--ETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVP 1172
Query: 874 MGTG 877
GTG
Sbjct: 1173 AGTG 1176
Score = 72 (30.4 bits), Expect = 3.7e-10, Sum P(5) = 3.7e-10
Identities = 30/110 (27%), Positives = 51/110 (46%)
Query: 271 KEDVIEVIQ-KAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKA 329
K++++E Q K N+ + G + +V I + A+D G KSL E N +
Sbjct: 669 KQEILEEAQSKVDNVMKQFRRGLITEEERYERVISIWSAAKDVIQGKLMKSLDELNPIYM 728
Query: 330 MVVAGSKGSNINISQVIACVG-QQNVEGK--RIPF--GFRK--RTLPHFI 372
M +G++G+ N +Q+ G N G+ +P FR+ L +FI
Sbjct: 729 MSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFI 778
Score = 59 (25.8 bits), Expect = 8.0e-06, Sum P(4) = 8.0e-06
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 545 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGYIQRRLI 599
T + L+ IT+ + + L SF+ET VL DAA + D + G + +I
Sbjct: 1115 TGRPVLLGITKASL--ETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVII 1167
Score = 47 (21.6 bits), Expect = 3.7e-10, Sum P(5) = 3.7e-10
Identities = 16/72 (22%), Positives = 34/72 (47%)
Query: 1262 ETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYR 1321
E D + +VL+E +DP E+ +V + V++ + E+ V + G+ + +
Sbjct: 1014 EGDKITRGQVLTEGSIDPK--------ELLKVTDLTTVQEYLLHEVQKVYRMQGVEIGDK 1065
Query: 1322 HLALLCDVMTAK 1333
H+ ++ M K
Sbjct: 1066 HVEVMVRQMLRK 1077
Score = 39 (18.8 bits), Expect = 2.0e-09, Sum P(5) = 2.0e-09
Identities = 10/51 (19%), Positives = 27/51 (52%)
Query: 766 GNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 816
G+ + + L K+ + +V++ + E+ V + G+ + +H+ ++ M K
Sbjct: 1027 GSIDPKELLKVTDLTTVQEYLLHEVQKVYRMQGVEIGDKHVEVMVRQMLRK 1077
Score = 38 (18.4 bits), Expect = 3.7e-10, Sum P(5) = 3.7e-10
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 20 YAWYVVPYPYEESIILGMDPK 40
+ WY P ++L M P+
Sbjct: 103 HIWYFKGIPSRMGLVLDMSPR 123
>TIGR_CMR|ECH_0951 [details] [associations]
symbol:ECH_0951 "DNA-directed RNA polymerase, beta'
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_507739.1 ProteinModelPortal:Q2GFP4
STRING:Q2GFP4 PRIDE:Q2GFP4 GeneID:3927754 KEGG:ech:ECH_0951
PATRIC:20577284 BioCyc:ECHA205920:GJNR-954-MONOMER Uniprot:Q2GFP4
Length = 1410
Score = 130 (50.8 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 34/97 (35%), Positives = 50/97 (51%)
Query: 386 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK-AMESVMVHYDCTVRNSV 444
+++ GL E+F G R+GL DTA+KTA +GY+ RRL+ A + ++V YDC N
Sbjct: 757 SNFREGLNVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCIVVEYDCKTHNGF 816
Query: 445 GQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKY 481
+R +G G VE +D + L D Y
Sbjct: 817 A----IRSVVEG--GTVVE--TLDNIILGRVAAVDVY 845
Score = 96 (38.9 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 1336 LMAITRHGINRQDTGALMRC-SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1394
L ITR + DT + + SF+ET VL +AA + D + G+ EN+I+G+L GTG
Sbjct: 1302 LQGITRASL---DTNSFVSAASFQETTKVLTEAAFSGKEDSLYGLKENVIVGRLIPAGTG 1358
Score = 96 (38.9 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 819 LMAITRHGINRQDTGALMRC-SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 877
L ITR + DT + + SF+ET VL +AA + D + G+ EN+I+G+L GTG
Sbjct: 1302 LQGITRASL---DTNSFVSAASFQETTKVLTEAAFSGKEDSLYGLKENVIVGRLIPAGTG 1358
Score = 67 (28.6 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 39/186 (20%), Positives = 82/186 (44%)
Query: 1156 ISEKINAGFGDDLNCIFNDDNAEKLVLR--IRIMNSDDSKMQDEEDAVDKMEDDMF--LR 1211
+S + A + + + N + +K+ I + D K +D + ++ + +F R
Sbjct: 1085 LSNGLEANYFIPIGAVLNVQDGQKVHAGDVITRIPRDSIKTRDITGGLPRVIE-LFEARR 1143
Query: 1212 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKV 1271
E ++SD + G GK Y SK+RI I + + ++L+ + +
Sbjct: 1144 PKEHAIVSD--IDGYVEFGKDYYR-----SKRRIFIKPVSDTLSPVEYLVPKGKHT---I 1193
Query: 1272 LSERDV----DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLC 1327
++E D D + D +I +VLG+EA+ + E+ V + G+ ++ +H+ ++
Sbjct: 1194 VNEGDFVHKGDLLMDGDPDPHDILRVLGVEALANYMISEIQQVYRLQGVRIDNKHIEIIL 1253
Query: 1328 DVMTAK 1333
M K
Sbjct: 1254 RQMLQK 1259
Score = 54 (24.1 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 550 LMAITRHGINRQDTGALMRC-SFEETVDVLMDAAAHAEADPMRG 592
L ITR + DT + + SF+ET VL +AA + D + G
Sbjct: 1302 LQGITRASL---DTNSFVSAASFQETTKVLTEAAFSGKEDSLYG 1342
Score = 48 (22.0 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 1233 YMHLPQTDSKKRIIITESG-EFKAIADWLLETDGTSLM-KVLSERDVDPVRTFSNDI 1287
YM L S ++ +G + + DW L G +L +++ D D + T SN +
Sbjct: 1033 YMDLIDGVSINEVLDESTGISNRVVVDWKLHLQGANLRPRLVLIDDNDNIITLSNGL 1089
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 8/51 (15%), Positives = 26/51 (50%)
Query: 766 GNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 816
G+ + + +++ V ++ + E+ V + G+ ++ +H+ ++ M K
Sbjct: 1209 GDPDPHDILRVLGVEALANYMISEIQQVYRLQGVRIDNKHIEIILRQMLQK 1259
>UNIPROTKB|P0A674 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006351 EMBL:BX842574
Gene3D:2.40.40.20 InterPro:IPR009010 DrugBank:DB01045 GO:GO:0003899
eggNOG:COG0086 EMBL:L27989 KO:K03046 HOGENOM:HOG000218386
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G70535
RefSeq:NP_215182.1 RefSeq:NP_335108.1 RefSeq:YP_006514010.1
ProteinModelPortal:P0A674 SMR:P0A674 IntAct:P0A674 PRIDE:P0A674
EnsemblBacteria:EBMYCT00000001410 EnsemblBacteria:EBMYCT00000072799
GeneID:13318555 GeneID:888177 GeneID:925980 KEGG:mtc:MT0696
KEGG:mtu:Rv0668 KEGG:mtv:RVBD_0668 PATRIC:18123251
TubercuList:Rv0668 DrugBank:DB01201 Uniprot:P0A674
Length = 1316
Score = 138 (53.6 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 29/68 (42%), Positives = 46/68 (67%)
Query: 384 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVH-YDC-TVR 441
V++S+ GLT E+F + G R+GL DTA++TA++GY+ RRL+ + V+V +DC T R
Sbjct: 836 VKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTER 895
Query: 442 NSVGQLIQ 449
V +L +
Sbjct: 896 GIVVELAE 903
Score = 104 (41.7 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 819 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 877
LM IT+ + D+ L SF+ET VL DAA + +D + G+ EN+I+G+L GTG
Sbjct: 1207 LMGITKASL-ATDSW-LSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPAGTG 1263
Score = 104 (41.7 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 1336 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1394
LM IT+ + D+ L SF+ET VL DAA + +D + G+ EN+I+G+L GTG
Sbjct: 1207 LMGITKASL-ATDSW-LSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPAGTG 1263
Score = 63 (27.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 550 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGYIQRRLI 599
LM IT+ + D+ L SF+ET VL DAA + +D + G + +I
Sbjct: 1207 LMGITKASL-ATDSW-LSAASFQETTRVLTDAAINCRSDKLNGLKENVII 1254
Score = 52 (23.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 30/125 (24%), Positives = 59/125 (47%)
Query: 1264 DGTSLMKVLSERD-VDPVRTF---SNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVN 1319
DG+ +VLS+ D V+ + S D E+ +V G V+ + +E+ V + G+ ++
Sbjct: 1093 DGSE--RVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQEVYRAQGVSIH 1150
Query: 1320 YRHLALLCDVMTAKGHLMAITRHGINRQDTGALM-RCSFE-ETVDVLMDAAAHAEADP-M 1376
+H+ ++ M + + I G G+L+ R FE E V+ + A P +
Sbjct: 1151 DKHIEVIVRQMLRR---VTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEPAAGRPVL 1207
Query: 1377 RGVSE 1381
G+++
Sbjct: 1208 MGITK 1212
Score = 49 (22.3 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 687 EKEMVDHFSWKQLRRIF-NEDVLRELMGSGDVISELEKEWEKLCEDREALR 736
E+ + D S +Q R+F +ED ++ GD + ++ E + E LR
Sbjct: 1073 EEVVYDKISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLR 1123
>TIGR_CMR|CHY_2317 [details] [associations]
symbol:CHY_2317 "DNA-directed RNA polymerase, beta'
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 InterPro:IPR012756
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 TIGRFAMs:TIGR02388 OMA:DINDKHI
ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 HOGENOM:HOG000218387
RefSeq:YP_361126.1 ProteinModelPortal:Q3A9Q8 SMR:Q3A9Q8
STRING:Q3A9Q8 PRIDE:Q3A9Q8 GeneID:3727667 KEGG:chy:CHY_2317
PATRIC:21277703 BioCyc:CHYD246194:GJCN-2316-MONOMER Uniprot:Q3A9Q8
Length = 1152
Score = 126 (49.4 bits), Expect = 3.5e-09, Sum P(6) = 3.5e-09
Identities = 29/89 (32%), Positives = 52/89 (58%)
Query: 384 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHY-DCTVRN 442
++ ++ GLT E+F G R+GL DTA++TA++GY+ RRL+ + V+V DC +
Sbjct: 724 IKANFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVCQDVIVREEDCGTED 783
Query: 443 SVGQLIQLRYGEDGLCGEAVEHQRIDTVA 471
+ + ++ G D + E +E + + VA
Sbjct: 784 GI-YVTDVKDGTDVI--EKLEDRILGRVA 809
Score = 110 (43.8 bits), Expect = 3.5e-09, Sum P(6) = 3.5e-09
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 1331 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 1390
TAK L+ IT+ + D+ L SF+ET VL +AA + DP+ G+ EN+I+G+L
Sbjct: 1076 TAKRVLLGITKASL-ATDS-FLSAASFQETTRVLTEAAIKGKVDPLLGLKENVIIGKLIP 1133
Query: 1391 MGTG 1394
GTG
Sbjct: 1134 AGTG 1137
Score = 110 (43.8 bits), Expect = 4.3e-08, Sum P(5) = 4.3e-08
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 814 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 873
TAK L+ IT+ + D+ L SF+ET VL +AA + DP+ G+ EN+I+G+L
Sbjct: 1076 TAKRVLLGITKASL-ATDS-FLSAASFQETTRVLTEAAIKGKVDPLLGLKENVIIGKLIP 1133
Query: 874 MGTG 877
GTG
Sbjct: 1134 AGTG 1137
Score = 76 (31.8 bits), Expect = 8.3e-05, Sum P(5) = 8.3e-05
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 1084
++ ++ GLT E+F G R+GL DTA++TA++
Sbjct: 724 IKANFREGLTVLEYFISTHGARKGLADTALRTADS 758
Score = 69 (29.3 bits), Expect = 9.8e-05, Sum P(4) = 9.8e-05
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 545 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGYIQRRLI 599
TAK L+ IT+ + D+ L SF+ET VL +AA + DP+ G + +I
Sbjct: 1076 TAKRVLLGITKASL-ATDS-FLSAASFQETTRVLTEAAIKGKVDPLLGLKENVII 1128
Score = 54 (24.1 bits), Expect = 3.5e-09, Sum P(6) = 3.5e-09
Identities = 18/95 (18%), Positives = 46/95 (48%)
Query: 263 IQMAIKKAKEDVIEVIQK-AHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSL 321
+ + + K K++++E + +++++ G +V I N A +K ++L
Sbjct: 620 VDITVPKEKQEILEEADRMVADIEVKYRRGLITEDERYQRVVDIWNAATEKVTKKLVETL 679
Query: 322 --TEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 354
+++N++ M +G++G NI Q+ G + +
Sbjct: 680 EASQFNHVYMMAKSGARG---NIQQIRQLAGMRGL 711
Score = 53 (23.7 bits), Expect = 3.5e-09, Sum P(6) = 3.5e-09
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 1289 EIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 1333
++ +V GIE + + +E+ V + G+ +N +H+ ++ M K
Sbjct: 994 DLIKVKGIEGAQLYLLQEVQKVYRMQGVEINDKHIEVVIRQMLRK 1038
Score = 40 (19.1 bits), Expect = 7.2e-08, Sum P(6) = 7.2e-08
Identities = 24/90 (26%), Positives = 39/90 (43%)
Query: 244 PGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQ-----KAHNMDLEPTPGNTLRQTF 298
PG G G A P+ E+ MA ++ ++ I+ + ++LE TPG +
Sbjct: 507 PGAK-GEGKKFAHPE---EVIMAYEEGVIELHTKIKVRYPIRGEIVELETTPGRIIFNEV 562
Query: 299 ENQVNRILNDARDKTGGSAKKSLTE-YNNL 327
+ R +N DK + K +TE Y L
Sbjct: 563 IPEELRFINHLVDKK--ALGKIVTESYRKL 590
Score = 39 (18.8 bits), Expect = 9.0e-08, Sum P(6) = 9.0e-08
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 172 FLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEV 231
+ +LG+E G ++ + ++ G +IGI D I P+ EI + D IEV
Sbjct: 587 YRKLGYEKTGYLLDGLKKLGFHYATKAGLTIGIVD-ITVPKEKQEILEEADRMVAD-IEV 644
Score = 37 (18.1 bits), Expect = 3.5e-09, Sum P(6) = 3.5e-09
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 20 YAWYVVPYPYEESIILGMDPK 40
+ WY P ++L M P+
Sbjct: 103 HIWYFKGIPSRMGLLLDMSPR 123
Score = 37 (18.1 bits), Expect = 3.5e-09, Sum P(6) = 3.5e-09
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 983 LVAENYRLSSEAFEWLVGEIENRFQQAQVIAC 1014
LVA+N ++ E E +V + + V+ C
Sbjct: 822 LVAKNQEITEEIAEKIVSANIKKVKIRSVLTC 853
Score = 37 (18.1 bits), Expect = 4.3e-08, Sum P(5) = 4.3e-08
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 766 GNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 816
G N L K+ + + + +E+ V + G+ +N +H+ ++ M K
Sbjct: 988 GPINPHDLIKVKGIEGAQLYLLQEVQKVYRMQGVEINDKHIEVVIRQMLRK 1038
>TIGR_CMR|CJE_0529 [details] [associations]
symbol:CJE_0529 "DNA-directed RNA polymerase, beta'
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:CP000025 GenomeReviews:CP000025_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
RefSeq:YP_178547.1 ProteinModelPortal:Q5HVY8 SMR:Q5HVY8
STRING:Q5HVY8 GeneID:3231290 KEGG:cjr:CJE0529 PATRIC:20042780
OMA:VIAEWDP BioCyc:CJEJ195099:GJC0-544-MONOMER Uniprot:Q5HVY8
Length = 1517
Score = 111 (44.1 bits), Expect = 7.9e-09, Sum P(3) = 7.9e-09
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 386 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHY-DCTVRNSV 444
+++ GL E+F G R+GL DTA+KTA GY+ R+LI ++V + DC V
Sbjct: 759 SNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKLIDVAQNVKITIEDCGTHEGV 818
Score = 90 (36.7 bits), Expect = 7.9e-09, Sum P(3) = 7.9e-09
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 819 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGC 878
L+ +TR I D+ + SF+ET VL +A+ + D + + EN+I+G++ +GTG
Sbjct: 1448 LLGVTRAAIG-SDS-VISAASFQETTKVLTEASIAGKFDYLEDLKENVILGRMIPVGTGL 1505
Query: 879 F 879
+
Sbjct: 1506 Y 1506
Score = 90 (36.7 bits), Expect = 9.2e-08, Sum P(4) = 9.2e-08
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 1336 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGC 1395
L+ +TR I D+ + SF+ET VL +A+ + D + + EN+I+G++ +GTG
Sbjct: 1448 LLGVTRAAIG-SDS-VISAASFQETTKVLTEASIAGKFDYLEDLKENVILGRMIPVGTGL 1505
Query: 1396 F 1396
+
Sbjct: 1506 Y 1506
Score = 85 (35.0 bits), Expect = 7.9e-09, Sum P(3) = 7.9e-09
Identities = 32/104 (30%), Positives = 51/104 (49%)
Query: 249 GIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFE--NQVNRIL 306
GI +IAD + Q AI +AK+ V E IQ ++N+ L T G + + N +L
Sbjct: 645 GISISIADIIVPNDKQKAIDEAKKQVRE-IQNSYNLGLI-TSGERYNKIIDIWKSTNNVL 702
Query: 307 NDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 350
+ K +K +N++ M +G++GS ISQ+ A G
Sbjct: 703 SKEMMKL---VEKDKEGFNSIYMMADSGARGSAAQISQLAAMRG 743
Score = 75 (31.5 bits), Expect = 0.00031, Sum P(4) = 0.00031
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 1052 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAI 1100
+++ GL E+F G R+GL DTA+KTA + L V N I
Sbjct: 759 SNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKLIDVAQNVKI 807
Score = 58 (25.5 bits), Expect = 3.8e-05, Sum P(4) = 3.8e-05
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 176 GHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKA 235
G E+ F ++ + + G SI I D I P + Q AI +AK+ V E IQ +
Sbjct: 622 GLEITASFLDRLKNLGFEYATKAGISISIADIIV-PN---DKQKAIDEAKKQVRE-IQNS 676
Query: 236 HNMDL 240
+N+ L
Sbjct: 677 YNLGL 681
Score = 53 (23.7 bits), Expect = 3.8e-05, Sum P(3) = 3.8e-05
Identities = 32/150 (21%), Positives = 69/150 (46%)
Query: 1241 SKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDIC---EIFQVLGIE 1297
SK+RIII E A++L+ D + ++V + ++ + ++ ++LG +
Sbjct: 1314 SKERIII--QAEDGTSAEYLI--DKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEK 1369
Query: 1298 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM-RCS 1356
A+ + E+ V + G+ ++ +H+ ++ M + + + G + G L+ R
Sbjct: 1370 ALHYYLISEIQQVYRGQGVVISDKHIEVIVSQMLRQ---VKVVDSGHTKFIEGDLVSRRK 1426
Query: 1357 F-EETVDVLMDAAAHAEADP-MRGVSENII 1384
F EE ++ A A+P + GV+ I
Sbjct: 1427 FREENERIIRMGGEPAIAEPVLLGVTRAAI 1456
Score = 47 (21.6 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 550 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEAD 588
L+ +TR I D+ + SF+ET VL +A+ + D
Sbjct: 1448 LLGVTRAAIG-SDS-VISAASFQETTKVLTEASIAGKFD 1484
Score = 37 (18.1 bits), Expect = 9.2e-08, Sum P(4) = 9.2e-08
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 1242 KKRIIITESGEFKAIAD 1258
KK I+ E G F IAD
Sbjct: 1115 KKGDIVKEKGFFVVIAD 1131
>TIGR_CMR|BA_0103 [details] [associations]
symbol:BA_0103 "DNA-directed RNA polymerase, beta' subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 EMBL:X89230 RefSeq:NP_842671.2
RefSeq:YP_016708.1 RefSeq:YP_026389.1 ProteinModelPortal:P77819
IntAct:P77819 DNASU:1086436 EnsemblBacteria:EBBACT00000011911
EnsemblBacteria:EBBACT00000018208 EnsemblBacteria:EBBACT00000020960
GeneID:1086436 GeneID:2818165 GeneID:2851002 KEGG:ban:BA_0103
KEGG:bar:GBAA_0103 KEGG:bat:BAS0103 HOGENOM:HOG000218387
BioCyc:BANT260799:GJAJ-114-MONOMER
BioCyc:BANT261594:GJ7F-116-MONOMER Uniprot:P77819
Length = 1203
Score = 129 (50.5 bits), Expect = 2.4e-08, Sum P(4) = 2.4e-08
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 384 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYD 437
+++S+ GLT E+F G R+GL DTA+KTA++GY+ RRL+ + V+V D
Sbjct: 763 IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVRED 816
Score = 105 (42.0 bits), Expect = 2.4e-08, Sum P(4) = 2.4e-08
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 1331 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 1390
TA+ L+ IT+ + + L SF+ET VL DAA + D + G+ EN+I+G+L
Sbjct: 1114 TARPVLLGITKASL--ETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVP 1171
Query: 1391 MGTG 1394
GTG
Sbjct: 1172 AGTG 1175
Score = 105 (42.0 bits), Expect = 1.5e-07, Sum P(4) = 1.5e-07
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 814 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 873
TA+ L+ IT+ + + L SF+ET VL DAA + D + G+ EN+I+G+L
Sbjct: 1114 TARPVLLGITKASL--ETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVP 1171
Query: 874 MGTG 877
GTG
Sbjct: 1172 AGTG 1175
Score = 85 (35.0 bits), Expect = 0.00051, Sum P(4) = 0.00051
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 1084
+++S+ GLT E+F G R+GL DTA+KTA++
Sbjct: 763 IKSSFREGLTVLEYFISTHGARKGLADTALKTADS 797
Score = 52 (23.4 bits), Expect = 2.4e-08, Sum P(4) = 2.4e-08
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 1270 KVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDV 1329
K L+E +DP E+ +V I AV++ + +E+ V + G+ + +H+ ++
Sbjct: 1021 KELTEGSIDPK--------ELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQ 1072
Query: 1330 MTAK 1333
M K
Sbjct: 1073 MLRK 1076
Score = 44 (20.5 bits), Expect = 1.5e-07, Sum P(4) = 1.5e-07
Identities = 10/51 (19%), Positives = 28/51 (54%)
Query: 766 GNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 816
G+ + + L K+ + +V++ + +E+ V + G+ + +H+ ++ M K
Sbjct: 1026 GSIDPKELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQMLRK 1076
Score = 43 (20.2 bits), Expect = 1.8e-07, Sum P(4) = 1.8e-07
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 1004 NRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPE-SRGFVENSYLAGLT 1059
N + Q + G+ IP+G R + +P K +G E + G ++ L +T
Sbjct: 982 NDVKDRQEVVVQGEVEARTYAIPYGARLKVIPGQ-KISHGKELTEGSIDPKELLKVT 1037
Score = 40 (19.1 bits), Expect = 3.6e-07, Sum P(4) = 3.6e-07
Identities = 21/92 (22%), Positives = 38/92 (41%)
Query: 1198 EDAVDKMEDDMFLRC-IEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAI 1256
+D + + EDD C + +L +G E I +Y L ++K + E+GE
Sbjct: 809 QDVIVR-EDD----CGTDRGLLIGAIKEGNEVIESLYDRLVGRFARKTVKHPETGEVLVA 863
Query: 1257 ADWLLETDGTSLMKVLSERDVDPVRTFSNDIC 1288
+ L+ D + ++ V+ V S C
Sbjct: 864 ENQLITED---IAHIVENSGVETVNIRSAFTC 892
Score = 38 (18.4 bits), Expect = 2.4e-08, Sum P(4) = 2.4e-08
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 20 YAWYVVPYPYEESIILGMDPK 40
+ WY P ++L M P+
Sbjct: 103 HIWYFKGIPSRMGLVLDMSPR 123
>UNIPROTKB|P0A8T7 [details] [associations]
symbol:rpoC "RNA polymerase, beta' subunit" species:83333
"Escherichia coli K-12" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IDA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005737 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351 EMBL:U00006
Gene3D:2.40.40.20 InterPro:IPR009010 PDB:3IYD PDBsum:3IYD
GO:GO:0003899 EMBL:V00339 eggNOG:COG0086 PDB:3LU0 PDBsum:3LU0
EMBL:V00340 EMBL:M38293 EMBL:M38303 KO:K03046 HOGENOM:HOG000218386
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 EMBL:M38305
EMBL:M38288 PIR:A00695 RefSeq:NP_418415.1 RefSeq:YP_491473.1
PDB:2AUK PDB:2LMC PDBsum:2AUK PDBsum:2LMC ProteinModelPortal:P0A8T7
SMR:P0A8T7 DIP:DIP-35803N IntAct:P0A8T7 MINT:MINT-1220667
PhosSite:P010445 PaxDb:P0A8T7 PRIDE:P0A8T7
EnsemblBacteria:EBESCT00000001546 EnsemblBacteria:EBESCT00000001547
EnsemblBacteria:EBESCT00000001548 EnsemblBacteria:EBESCT00000018189
GeneID:12933965 GeneID:948487 KEGG:ecj:Y75_p3209 KEGG:eco:b3988
PATRIC:32123497 EchoBASE:EB0888 EcoGene:EG10895
BioCyc:EcoCyc:RPOC-MONOMER BioCyc:ECOL316407:JW3951-MONOMER
BioCyc:MetaCyc:RPOC-MONOMER EvolutionaryTrace:P0A8T7
Genevestigator:P0A8T7 Uniprot:P0A8T7
Length = 1407
Score = 110 (43.8 bits), Expect = 3.0e-08, Sum P(5) = 3.0e-08
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 387 SYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK-AMESVMVHYDCTVRNSV 444
++ GL ++F G R+GL DTA+KTA +GY+ RRL+ A + V+ DC +
Sbjct: 762 NFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGI 820
Score = 98 (39.6 bits), Expect = 3.0e-08, Sum P(5) = 3.0e-08
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 1336 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1394
L+ IT+ + + + SF+ET VL +AA + D +RG+ EN+I+G+L GTG
Sbjct: 1306 LLGITKASLATESF--ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362
Score = 98 (39.6 bits), Expect = 1.3e-06, Sum P(5) = 1.3e-06
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 819 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 877
L+ IT+ + + + SF+ET VL +AA + D +RG+ EN+I+G+L GTG
Sbjct: 1306 LLGITKASLATESF--ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362
Score = 60 (26.2 bits), Expect = 3.0e-08, Sum P(5) = 3.0e-08
Identities = 11/49 (22%), Positives = 27/49 (55%)
Query: 1289 EIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1337
+I ++ G+ AV + + E+ V + G+ +N +H+ ++ M K ++
Sbjct: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIV 1267
Score = 54 (24.1 bits), Expect = 3.0e-08, Sum P(5) = 3.0e-08
Identities = 30/117 (25%), Positives = 56/117 (47%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFE----- 299
G S+GI D + P+ EI I +A+ +V E IQ+ L T G + +
Sbjct: 636 GASVGIDDMVI-PEKKHEI---ISEAEAEVAE-IQEQFQSGLV-TAGERYNKVIDIWAAA 689
Query: 300 -NQVNRILND-ARDKT----GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 350
++V++ + D + +T G +K ++ +N++ M +G++GS I Q+ G
Sbjct: 690 NDRVSKAMMDNLQTETVINRDGQEEKQVS-FNSIYMMADSGARGSAAQIRQLAGMRG 745
Score = 49 (22.3 bits), Expect = 3.0e-08, Sum P(5) = 3.0e-08
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 657 DPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQL 699
+P +R L R+ EDVL+ G+ D++ + + + H W L
Sbjct: 833 EPLRDRVLGRVTAEDVLKP--GTADIL--VPRNTLLHEQWCDL 871
Score = 43 (20.2 bits), Expect = 1.3e-06, Sum P(5) = 1.3e-06
Identities = 9/42 (21%), Positives = 22/42 (52%)
Query: 779 VLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 820
V +V + + E+ V + G+ +N +H+ ++ M K ++
Sbjct: 1226 VHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIV 1267
Score = 38 (18.4 bits), Expect = 3.7e-06, Sum P(5) = 3.7e-06
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 1271 VLSERDVDPV-RTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQ 1312
+L R V V R N++ +++++ G++ K +E + +L+
Sbjct: 1220 ILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 1262
Score = 38 (18.4 bits), Expect = 1.2e-05, Sum P(4) = 1.2e-05
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 517 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 551
+ E+ V + G+ +N +H+ ++ M K ++
Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIV 1267
>TIGR_CMR|SO_0225 [details] [associations]
symbol:SO_0225 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_715865.1 ProteinModelPortal:Q8EK73
SMR:Q8EK73 PRIDE:Q8EK73 GeneID:1168108 KEGG:son:SO_0225
PATRIC:23520143 Uniprot:Q8EK73
Length = 1405
Score = 118 (46.6 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 54/196 (27%), Positives = 86/196 (43%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNR 304
G S+GI D + + Y + A+ +V+E IQ+ L T G N+V
Sbjct: 636 GASVGIDDMVIPAEKYT----LVADAEAEVLE-IQEQFQSGLV-TAGERY-----NKVID 684
Query: 305 ILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGK-RIPFGF 363
I A +K + ++L+ + V K ++ N ++A G + + R G
Sbjct: 685 IWASANEKVSKAMMENLSTETVINRDGVE-EKQASFNSIYMMADSGARGSAAQIRQLAGM 743
Query: 364 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 423
R K D V N + GL ++F G R+GL DTA+KTA +GY+ R
Sbjct: 744 RGL----MAKPDGSIIETPIVAN-FREGLNVLQYFISTHGARKGLADTALKTANSGYLTR 798
Query: 424 RLIK-AMESVMVHYDC 438
RL+ A + V++ DC
Sbjct: 799 RLVDVAQDLVVIEDDC 814
Score = 101 (40.6 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 1331 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 1390
T + L+ IT+ + + + SF+ET VL +AA ++D +RG+ EN+I+G+L
Sbjct: 1301 TFERELLGITKASLATESF--ISAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIP 1358
Query: 1391 MGTG 1394
GTG
Sbjct: 1359 AGTG 1362
Score = 101 (40.6 bits), Expect = 2.4e-06, Sum P(3) = 2.4e-06
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 814 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 873
T + L+ IT+ + + + SF+ET VL +AA ++D +RG+ EN+I+G+L
Sbjct: 1301 TFERELLGITKASLATESF--ISAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIP 1358
Query: 874 MGTG 877
GTG
Sbjct: 1359 AGTG 1362
Score = 60 (26.2 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 43/174 (24%), Positives = 79/174 (45%)
Query: 1169 NCIFN-DDNAEKLVL-RIRIMNSDDSKMQDEEDAVDKMEDDMFLRCI-EANMLSDMTLQG 1225
+ I N DDNA+ V + + + SK +D + ++ D R E +L++++ G
Sbjct: 1104 SAIVNLDDNAQIAVGDALARIPQESSKTRDITGGLPRVADLFEARKPKEPAILAEIS--G 1161
Query: 1226 IEAIGKVYMHLPQTDSKKRIIIT--ESGEF--KAIADW--LLETDGTSLMKVLSERDVDP 1279
+ GK +T K+R++IT + GE + I W L +G KV ER +
Sbjct: 1162 TISFGK------ETKGKRRLVITPADGGEQYEEMIPKWRNLNVFEGE---KV--ERG-EV 1209
Query: 1280 VRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 1333
+ +I ++ GI V + E+ V + G+ +N +H+ ++ M K
Sbjct: 1210 IADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQMLRK 1263
Score = 41 (19.5 bits), Expect = 2.4e-06, Sum P(3) = 2.4e-06
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 766 GNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 816
G E + ++ + +V + E+ V + G+ +N +H+ ++ M K
Sbjct: 1213 GPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQMLRK 1263
Score = 37 (18.1 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 517 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 547
+ E+ V + G+ +N +H+ ++ M K
Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIIRQMLRK 1263
>TIGR_CMR|DET_0604 [details] [associations]
symbol:DET_0604 "DNA-directed RNA polymerase, beta'
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
HOGENOM:HOG000218387 RefSeq:YP_181346.1 ProteinModelPortal:Q3Z8V3
SMR:Q3Z8V3 STRING:Q3Z8V3 PRIDE:Q3Z8V3 GeneID:3230059
KEGG:det:DET0604 PATRIC:21608279 BioCyc:DETH243164:GJNF-605-MONOMER
Uniprot:Q3Z8V3
Length = 1295
Score = 119 (46.9 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 384 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV-HYDCTVRN 442
+++S GLT E+F G R+GL DTA++T+ +GY+ RRLI + V++ DC N
Sbjct: 786 IKSSLREGLTTLEYFISTHGARKGLADTALRTSGSGYLTRRLIDVTQDVIILQEDCGTSN 845
Score = 110 (43.8 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 1318 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1377
+N + LA + TA LM ITR ++ + L SF+ET VL DAA + + D +
Sbjct: 1191 INAKVLAEGGEPATAHTVLMGITRASLSTESW--LAAASFQETTRVLTDAAIYGKVDKLS 1248
Query: 1378 GVSENIIMGQL-PRMGTGCFDLLLD-AEK 1404
G+ EN+I+G+L P C + ++ AE+
Sbjct: 1249 GLKENVIIGKLIPAQCKSCKEATVERAER 1277
Score = 110 (43.8 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 801 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 860
+N + LA + TA LM ITR ++ + L SF+ET VL DAA + + D +
Sbjct: 1191 INAKVLAEGGEPATAHTVLMGITRASLSTESW--LAAASFQETTRVLTDAAIYGKVDKLS 1248
Query: 861 GVSENIIMGQL-PRMGTGCFDLLLD-AEK 887
G+ EN+I+G+L P C + ++ AE+
Sbjct: 1249 GLKENVIIGKLIPAQCKSCKEATVERAER 1277
Score = 78 (32.5 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 1050 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYY-DPDPQN 1108
+++S GLT E+F G R+GL DTA++T+ + + L VT + I D N
Sbjct: 786 IKSSLREGLTTLEYFISTHGARKGLADTALRTSGSGYLTRRLIDVTQDVIILQEDCGTSN 845
Query: 1109 -TVIPEDQE 1116
T I E +E
Sbjct: 846 GTWIVEPKE 854
Score = 76 (31.8 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 532 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 591
+N + LA + TA LM ITR ++ + L SF+ET VL DAA + + D +
Sbjct: 1191 INAKVLAEGGEPATAHTVLMGITRASLSTESW--LAAASFQETTRVLTDAAIYGKVDKLS 1248
Query: 592 GYIQRRLI 599
G + +I
Sbjct: 1249 GLKENVII 1256
Score = 67 (28.6 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 1289 EIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 1333
+I +LG +AV+K + +E+ V G+++N +H+ ++ M K
Sbjct: 1122 DILSILGRDAVQKYLVEEVQKVYYSQGVHINDKHIEVIARQMLIK 1166
Score = 48 (22.0 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 766 GNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 816
G+ N + + I+ +V+K + +E+ V G+++N +H+ ++ M K
Sbjct: 1116 GSINPQDILSILGRDAVQKYLVEEVQKVYYSQGVHINDKHIEVIARQMLIK 1166
Score = 38 (18.4 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 519 KEMNTVLQFYGLYVNYRHLALLCDVMTAK 547
+E+ V G+++N +H+ ++ M K
Sbjct: 1138 EEVQKVYYSQGVHINDKHIEVIARQMLIK 1166
>UNIPROTKB|Q9KV29 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
PIR:G82336 RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
PATRIC:20079715 Uniprot:Q9KV29
Length = 1401
Score = 117 (46.2 bits), Expect = 7.5e-08, Sum P(3) = 7.5e-08
Identities = 53/196 (27%), Positives = 85/196 (43%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNR 304
G S+GI D + Y EI +A+E+V E IQ+ L T G N+V
Sbjct: 636 GVSVGIDDMVVPAAKYTEIA----EAEEEVRE-IQEQFQSGLV-TAGERY-----NKVID 684
Query: 305 ILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGK-RIPFGF 363
I D+ + ++L+ + K + N ++A G + + R G
Sbjct: 685 IWASTNDRVAKAMMENLSSEQVINRQGEQ-EKQESFNSIYMMADSGARGSAAQIRQLAGM 743
Query: 364 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 423
R + D G + ++ GL ++F G R+GL DTA+KTA +GY+ R
Sbjct: 744 RGL----MARPD-GSIIETPITANFKEGLNVLQYFISTHGARKGLADTALKTANSGYLTR 798
Query: 424 RLIKAMESVMV-HYDC 438
RL+ + V+V +DC
Sbjct: 799 RLVDVAQDVVVTEHDC 814
Score = 99 (39.9 bits), Expect = 7.5e-08, Sum P(3) = 7.5e-08
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 1336 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1394
L+ IT+ + + + SF+ET VL +AA + D +RG+ EN+I+G+L GTG
Sbjct: 1305 LLGITKASLATESF--ISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTG 1361
Score = 99 (39.9 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 819 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 877
L+ IT+ + + + SF+ET VL +AA + D +RG+ EN+I+G+L GTG
Sbjct: 1305 LLGITKASLATESF--ISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTG 1361
Score = 59 (25.8 bits), Expect = 7.5e-08, Sum P(3) = 7.5e-08
Identities = 23/98 (23%), Positives = 47/98 (47%)
Query: 1238 QTDSKKRIIIT-ESGE-FKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1295
+T K+R+IIT +SG+ ++ + + + ++ ER D + +I ++ G
Sbjct: 1168 ETKGKRRLIITRDSGDTYEEMIPKHRQLNVFEGERI--ERG-DVIADGPESPHDILRLRG 1224
Query: 1296 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 1333
I AV + E+ V + G+ +N +H+ + M K
Sbjct: 1225 IHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQMLRK 1262
Score = 40 (19.1 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 766 GNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 816
G E+ + ++ + +V + E+ V + G+ +N +H+ + M K
Sbjct: 1212 GPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQMLRK 1262
Score = 39 (18.8 bits), Expect = 7.4e-06, Sum P(3) = 7.4e-06
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 547
T + E+ V + G+ +N +H+ + M K
Sbjct: 1230 TYIANEVQEVYRLQGVKINDKHIETIVRQMLRK 1262
>TIGR_CMR|VC_0329 [details] [associations]
symbol:VC_0329 "DNA-directed RNA polymerase, beta' subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G82336
RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
PATRIC:20079715 Uniprot:Q9KV29
Length = 1401
Score = 117 (46.2 bits), Expect = 7.5e-08, Sum P(3) = 7.5e-08
Identities = 53/196 (27%), Positives = 85/196 (43%)
Query: 245 GHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNR 304
G S+GI D + Y EI +A+E+V E IQ+ L T G N+V
Sbjct: 636 GVSVGIDDMVVPAAKYTEIA----EAEEEVRE-IQEQFQSGLV-TAGERY-----NKVID 684
Query: 305 ILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGK-RIPFGF 363
I D+ + ++L+ + K + N ++A G + + R G
Sbjct: 685 IWASTNDRVAKAMMENLSSEQVINRQGEQ-EKQESFNSIYMMADSGARGSAAQIRQLAGM 743
Query: 364 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 423
R + D G + ++ GL ++F G R+GL DTA+KTA +GY+ R
Sbjct: 744 RGL----MARPD-GSIIETPITANFKEGLNVLQYFISTHGARKGLADTALKTANSGYLTR 798
Query: 424 RLIKAMESVMV-HYDC 438
RL+ + V+V +DC
Sbjct: 799 RLVDVAQDVVVTEHDC 814
Score = 99 (39.9 bits), Expect = 7.5e-08, Sum P(3) = 7.5e-08
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 1336 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1394
L+ IT+ + + + SF+ET VL +AA + D +RG+ EN+I+G+L GTG
Sbjct: 1305 LLGITKASLATESF--ISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTG 1361
Score = 99 (39.9 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 819 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 877
L+ IT+ + + + SF+ET VL +AA + D +RG+ EN+I+G+L GTG
Sbjct: 1305 LLGITKASLATESF--ISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTG 1361
Score = 59 (25.8 bits), Expect = 7.5e-08, Sum P(3) = 7.5e-08
Identities = 23/98 (23%), Positives = 47/98 (47%)
Query: 1238 QTDSKKRIIIT-ESGE-FKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1295
+T K+R+IIT +SG+ ++ + + + ++ ER D + +I ++ G
Sbjct: 1168 ETKGKRRLIITRDSGDTYEEMIPKHRQLNVFEGERI--ERG-DVIADGPESPHDILRLRG 1224
Query: 1296 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 1333
I AV + E+ V + G+ +N +H+ + M K
Sbjct: 1225 IHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQMLRK 1262
Score = 40 (19.1 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 766 GNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 816
G E+ + ++ + +V + E+ V + G+ +N +H+ + M K
Sbjct: 1212 GPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQMLRK 1262
Score = 39 (18.8 bits), Expect = 7.4e-06, Sum P(3) = 7.4e-06
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 515 TSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 547
T + E+ V + G+ +N +H+ + M K
Sbjct: 1230 TYIANEVQEVYRLQGVKINDKHIETIVRQMLRK 1262
>TIGR_CMR|CPS_4768 [details] [associations]
symbol:CPS_4768 "DNA-directed RNA polymerase, beta'
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_271412.1 ProteinModelPortal:Q47UW0
SMR:Q47UW0 STRING:Q47UW0 PRIDE:Q47UW0 GeneID:3519900
KEGG:cps:CPS_4768 PATRIC:21472353
BioCyc:CPSY167879:GI48-4774-MONOMER Uniprot:Q47UW0
Length = 1406
Score = 122 (48.0 bits), Expect = 2.4e-07, Sum P(5) = 2.4e-07
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 384 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK-AMESVMVHYDC 438
++ ++ GLT ++F G R+GL DTA+KTA +GY+ RRL+ A + V+ ++DC
Sbjct: 759 IKANFREGLTVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTNHDC 814
Score = 98 (39.6 bits), Expect = 2.4e-07, Sum P(5) = 2.4e-07
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 1336 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1394
+M IT+ + + + SF+ET VL +AA + D +RG+ EN+I+G+L GTG
Sbjct: 1305 MMGITKASLATESF--ISAASFQETTRVLTEAAVAGKKDGLRGLKENVIVGRLIPAGTG 1361
Score = 98 (39.6 bits), Expect = 8.0e-06, Sum P(5) = 8.0e-06
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 819 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 877
+M IT+ + + + SF+ET VL +AA + D +RG+ EN+I+G+L GTG
Sbjct: 1305 MMGITKASLATESF--ISAASFQETTRVLTEAAVAGKKDGLRGLKENVIVGRLIPAGTG 1361
Score = 60 (26.2 bits), Expect = 2.4e-07, Sum P(5) = 2.4e-07
Identities = 27/125 (21%), Positives = 58/125 (46%)
Query: 1217 MLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITE-SGEFKAIADWLLETDGTSLMKVLSER 1275
+L++ T G+ A GK +T K R++IT+ SGE + + ++ T L+ +
Sbjct: 1155 ILAEKT--GVVAFGK------ETKGKVRLLITQPSGE---VYEEMIPK--TRLLNIYEGE 1201
Query: 1276 DV---DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTA 1332
V + + +I ++ G+ V + E+ V + G+ +N +H+ ++ M
Sbjct: 1202 PVIKGEVIADGPESPHDILRLRGVAPVANYIVNEVQEVYRLQGVKINDKHIEVIVRQMIR 1261
Query: 1333 KGHLM 1337
K ++
Sbjct: 1262 KCEIL 1266
Score = 48 (22.0 bits), Expect = 3.4e-06, Sum P(5) = 3.4e-06
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 1229 IGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSER 1275
+G +PQ SK R I +G +AD L E L +L+E+
Sbjct: 1117 VGDALARIPQASSKTRDI---TGGLPRVAD-LFEARKPKLPAILAEK 1159
Score = 44 (20.5 bits), Expect = 8.0e-06, Sum P(5) = 8.0e-06
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 766 GNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 820
G E+ + ++ V V + E+ V + G+ +N +H+ ++ M K ++
Sbjct: 1212 GPESPHDILRLRGVAPVANYIVNEVQEVYRLQGVKINDKHIEVIVRQMIRKCEIL 1266
Score = 41 (19.5 bits), Expect = 2.4e-07, Sum P(5) = 2.4e-07
Identities = 23/114 (20%), Positives = 52/114 (45%)
Query: 245 GHSIGIGDTIADPQTYL-----EIQMAIKKAKED--VIEVIQKAHNM-DLEPTPGNTLRQ 296
G S+GI D + Y E ++A +A+ D ++ +K + + D+ + + +
Sbjct: 636 GCSVGIDDMVIPEAKYTIVEDSEAEVAEIQAQFDQGLVTAGEKYNKVIDIWSSANEKVSK 695
Query: 297 TFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG 350
+ +++ + RD G ++ +N++ M +G++GS I Q+ G
Sbjct: 696 AMMDNLSKEMVMNRD---GEMEEQ-DSFNSIFMMADSGARGSAAQIRQLAGMRG 745
Score = 40 (19.1 bits), Expect = 2.4e-07, Sum P(5) = 2.4e-07
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 657 DPSNERQLRRIFNEDVLRELMGSGDVI 683
+P ER L R+ +DVL + G+ +V+
Sbjct: 833 EPLRERVLGRVVCDDVL--IPGTDEVL 857
Score = 38 (18.4 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 517 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 551
+ E+ V + G+ +N +H+ ++ M K ++
Sbjct: 1232 IVNEVQEVYRLQGVKINDKHIEVIVRQMIRKCEIL 1266
>TIGR_CMR|CBU_0232 [details] [associations]
symbol:CBU_0232 "DNA-directed RNA polymerase beta'
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_819276.1 ProteinModelPortal:Q83ET0
SMR:Q83ET0 PRIDE:Q83ET0 GeneID:1208113 KEGG:cbu:CBU_0232
PATRIC:17929155 BioCyc:CBUR227377:GJ7S-238-MONOMER Uniprot:Q83ET0
Length = 1414
Score = 121 (47.7 bits), Expect = 3.1e-07, Sum P(4) = 3.1e-07
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 387 SYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK-AMESVMVHYDCTVRNSVG 445
++ GL ++F G R+GL DTA+KTA +GY+ RRL+ A + V+ +DC S+
Sbjct: 762 NFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEHDCGTEASIE 821
Query: 446 QLIQLRYGE 454
+ + G+
Sbjct: 822 MMPHIEGGD 830
Score = 91 (37.1 bits), Expect = 3.1e-07, Sum P(4) = 3.1e-07
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 1336 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1394
L+ IT+ + + + SF+ET VL A+ + D +RG+ EN+I+G+L GTG
Sbjct: 1305 LLGITKASLATESF--ISAASFQETTRVLTAASVAGKRDDLRGLKENVIVGRLIPAGTG 1361
Score = 91 (37.1 bits), Expect = 3.6e-06, Sum P(4) = 3.6e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 819 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 877
L+ IT+ + + + SF+ET VL A+ + D +RG+ EN+I+G+L GTG
Sbjct: 1305 LLGITKASLATESF--ISAASFQETTRVLTAASVAGKRDDLRGLKENVIVGRLIPAGTG 1361
Score = 69 (29.3 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 45/178 (25%), Positives = 81/178 (45%)
Query: 1190 DDSKMQDEEDAVDKMEDDMF--LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIII 1247
+ SK +D + ++ D +F R +A +L++++ G+ + GK T K R+II
Sbjct: 1127 ETSKTRDITGGLPRVAD-LFEARRPKDAAILAEIS--GVVSFGK------DTKDKGRLII 1177
Query: 1248 TE-SGEF--KAIADW--LLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1302
T G + I W + +G ++ K E D R D +I ++LG+ A+
Sbjct: 1178 TAPDGTTHEELIPKWRHVSVFEGETVEK--GEVIADGPR----DPHDILRLLGVNALANY 1231
Query: 1303 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1360
+ E+ V + G+ +N +H+ ++ M K + IT+ G DT L E T
Sbjct: 1232 IVNEVQEVYRLQGVKINDKHIEVIVRQMLRK---VKITQPG----DTDLLQNEQVERT 1282
Score = 54 (24.1 bits), Expect = 3.1e-07, Sum P(4) = 3.1e-07
Identities = 30/94 (31%), Positives = 42/94 (44%)
Query: 1201 VDKMEDDMFLRC--IEAN-MLSDMTL----QGIEA-IGKVYMHLPQTDSKKRIIITESGE 1252
VDK +DD+FL + A+ L + T G IG V +PQ SK R I +G
Sbjct: 1081 VDKNDDDLFLPGGKVPAHYFLPEGTFLTKEDGTTVNIGDVLARIPQETSKTRDI---TGG 1137
Query: 1253 FKAIADWLLETDGTSLMKVLSERDVDPVRTFSND 1286
+AD L E +L+E + V +F D
Sbjct: 1138 LPRVAD-LFEARRPKDAAILAE--ISGVVSFGKD 1168
Score = 50 (22.7 bits), Expect = 3.1e-07, Sum P(4) = 3.1e-07
Identities = 31/120 (25%), Positives = 54/120 (45%)
Query: 171 CFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIE 230
C+ LG + F + + ++ G SIGI D + Q + I +A+++V E
Sbjct: 608 CYRNLGLKTTVIFADKLMYMGFHYATHSGVSIGINDLVVPDQK----EAIISRAEDEVRE 663
Query: 231 VIQKAHNMDLEPTPGHS----IGIGDTIADP--QTYLEIQMAIKKAKE-DVIEVIQKAHN 283
I+K + L T G I I D + +E ++A++K K+ + EV Q + N
Sbjct: 664 -IEKQYASGLV-THGERRNKVIDIWSRTNDQVAKAMME-KIAVEKVKDAEGKEVAQSSFN 720
Score = 45 (20.9 bits), Expect = 2.3e-06, Sum P(4) = 2.3e-06
Identities = 16/71 (22%), Positives = 33/71 (46%)
Query: 773 LCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 832
+ +++ V ++ + E+ V + G+ +N +H+ ++ M K + IT+ G DT
Sbjct: 1219 ILRLLGVNALANYIVNEVQEVYRLQGVKINDKHIEVIVRQMLRK---VKITQPG----DT 1271
Query: 833 GALMRCSFEET 843
L E T
Sbjct: 1272 DLLQNEQVERT 1282
Score = 43 (20.2 bits), Expect = 3.6e-06, Sum P(4) = 3.6e-06
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 508 LIGCWKLTS-VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 566
L+G L + + E+ V + G+ +N +H+ ++ M K + IT+ G DT L
Sbjct: 1222 LLGVNALANYIVNEVQEVYRLQGVKINDKHIEVIVRQMLRK---VKITQPG----DTDLL 1274
Query: 567 MRCSFEET 574
E T
Sbjct: 1275 QNEQVERT 1282
Score = 37 (18.1 bits), Expect = 1.4e-05, Sum P(4) = 1.4e-05
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 1271 VLSERDVDPVRTFSNDICE 1289
+L E +D VR S CE
Sbjct: 871 ILEEHSIDRVRVRSAITCE 889
>TIGR_CMR|SPO_3507 [details] [associations]
symbol:SPO_3507 "DNA-directed RNA polymerase, beta'
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_168702.1 ProteinModelPortal:Q5LMQ6
SMR:Q5LMQ6 PRIDE:Q5LMQ6 GeneID:3196349 KEGG:sil:SPO3507
PATRIC:23380483 Uniprot:Q5LMQ6
Length = 1413
Score = 117 (46.2 bits), Expect = 4.0e-07, Sum P(5) = 4.0e-07
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 386 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK-AMESVMVHYDCTVRNSV 444
+++ GLT E+F G R+GL DTA+KTA +GY+ RRL+ A + ++ +DC V
Sbjct: 758 SNFKEGLTVLEYFNSTHGARKGLSDTALKTANSGYLTRRLVDVAQDCIVREHDCGTDRGV 817
Query: 445 GQLIQLRYGE 454
+ GE
Sbjct: 818 TAEAAVNDGE 827
Score = 93 (37.8 bits), Expect = 4.0e-07, Sum P(5) = 4.0e-07
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 1336 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1394
L+ IT+ + Q + SF+ET VL +A+ + D + G+ EN+I+G+L GTG
Sbjct: 1301 LLGITKASL--QTRSFISAASFQETTRVLTEASVQGKKDKLVGLKENVIVGRLIPAGTG 1357
Score = 93 (37.8 bits), Expect = 1.7e-05, Sum P(4) = 1.7e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 819 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 877
L+ IT+ + Q + SF+ET VL +A+ + D + G+ EN+I+G+L GTG
Sbjct: 1301 LLGITKASL--QTRSFISAASFQETTRVLTEASVQGKKDKLVGLKENVIVGRLIPAGTG 1357
Score = 69 (29.3 bits), Expect = 4.0e-07, Sum P(5) = 4.0e-07
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 1289 EIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 1333
+I +LG+EA+ + KE+ V + G+ +N +H+ ++ M K
Sbjct: 1214 DILSILGVEALANYMVKEVQEVYRLQGVKINDKHIEVIVRQMLQK 1258
Score = 50 (22.7 bits), Expect = 2.4e-06, Sum P(3) = 2.4e-06
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 468 DTVALSHKKFEDKYRFDPSNERPTLRNVSSLRRVVNSKPLLIGCWK 513
DT L + DK FD +NE+ R R + +P+L+G K
Sbjct: 1266 DTTLLKGEHV-DKQEFDAANEKTIARG----GRPASGEPILLGITK 1306
Score = 49 (22.3 bits), Expect = 3.1e-05, Sum P(5) = 3.1e-05
Identities = 16/73 (21%), Positives = 37/73 (50%)
Query: 1242 KKRIIITESGEFKAIADWLLETDGTSLMK-VLSERDVDPVRTFS-NDICEIFQVLGIEAV 1299
K + I + G+F D+++ DG +LS V+ + + ++ E++++ G++
Sbjct: 1187 KGKHIPVQEGDFVQKGDYIM--DGNPAPHDILSILGVEALANYMVKEVQEVYRLQGVKIN 1244
Query: 1300 RKSVEKEMNTVLQ 1312
K +E + +LQ
Sbjct: 1245 DKHIEVIVRQMLQ 1257
Score = 47 (21.6 bits), Expect = 1.7e-05, Sum P(4) = 1.7e-05
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 766 GNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 816
GN + I+ V ++ + KE+ V + G+ +N +H+ ++ M K
Sbjct: 1208 GNPAPHDILSILGVEALANYMVKEVQEVYRLQGVKINDKHIEVIVRQMLQK 1258
Score = 42 (19.8 bits), Expect = 5.3e-05, Sum P(4) = 5.3e-05
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 641 DTVALSHKKFEDKYRFDPSNERQLRR 666
DT L + DK FD +NE+ + R
Sbjct: 1266 DTTLLKGEHV-DKQEFDAANEKTIAR 1290
Score = 41 (19.5 bits), Expect = 4.0e-07, Sum P(5) = 4.0e-07
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 661 ERQLRRIFNEDVLRE-----LMGSGDVISELEKEMVDHFSWKQLRRI 702
ER L R+ +D+LR L+ +G +I E + + H + Q R+
Sbjct: 834 ERVLGRVAADDILRPGTEEVLVAAGQLIDERMADAI-HEAGVQTSRV 879
Score = 41 (19.5 bits), Expect = 5.3e-05, Sum P(4) = 5.3e-05
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 519 KEMNTVLQFYGLYVNYRHLALLCDVMTAK 547
KE+ V + G+ +N +H+ ++ M K
Sbjct: 1230 KEVQEVYRLQGVKINDKHIEVIVRQMLQK 1258
Score = 39 (18.8 bits), Expect = 4.0e-07, Sum P(5) = 4.0e-07
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 931 AYNALMSPGAAMTPGGPGFSPSVAGEDQLSKQANENATLLFQ 972
A ++ PG +T G Q ++AN++ T+ F+
Sbjct: 916 AAQSIGEPGTQLTMRTFHIGGVAQGGQQSFQEANQDGTITFE 957
Score = 37 (18.1 bits), Expect = 6.3e-07, Sum P(5) = 6.3e-07
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 844 VDVLMDAAAHAEADPMRGVSENIIM 868
VD++ A E D G+++ I++
Sbjct: 1034 VDLVSGIAVRDETDEATGMTQKIVI 1058
>TIGR_CMR|APH_1023 [details] [associations]
symbol:APH_1023 "DNA-directed RNA polymerase, beta'
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 RefSeq:YP_505582.1 ProteinModelPortal:Q2GJ69
STRING:Q2GJ69 PRIDE:Q2GJ69 GeneID:3930013 KEGG:aph:APH_1023
PATRIC:20950796 HOGENOM:HOG000218386 OMA:DINDKHI
ProtClustDB:PRK00566 BioCyc:APHA212042:GHPM-1030-MONOMER
TIGRFAMs:TIGR02386 Uniprot:Q2GJ69
Length = 1409
Score = 118 (46.6 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 386 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK-AMESVMVHYDCTVRNSV 444
+++ GL+ E+F G R+GL DTA+KTA +GY+ RRL+ A + +V +DC V
Sbjct: 752 SNFREGLSVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCTVVEHDCGTSGGV 811
Score = 100 (40.3 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 819 LMAITRHGINRQDTGALMRC-SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 877
L IT+ + DT + + SF+ET VL +AA + DP+ G+ EN+I+G+L GTG
Sbjct: 1297 LQGITKASL---DTNSFISAASFQETTKVLTEAAFAGKEDPLYGLKENVIVGRLIPAGTG 1353
Score = 100 (40.3 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 1336 LMAITRHGINRQDTGALMRC-SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1394
L IT+ + DT + + SF+ET VL +AA + DP+ G+ EN+I+G+L GTG
Sbjct: 1297 LQGITKASL---DTNSFISAASFQETTKVLTEAAFAGKEDPLYGLKENVIVGRLIPAGTG 1353
Score = 40 (19.1 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 323 EYNNLKAMVVAGSKGSNINISQVIACVG 350
+YN++ M +G++GS + Q+ G
Sbjct: 709 KYNSIYMMANSGARGSASQMKQLAGMRG 736
>UNIPROTKB|P0C507 [details] [associations]
symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AY522331
GO:GO:0003899 TIGRFAMs:TIGR02388 ProteinModelPortal:P0C507
Gramene:P0C507 HOGENOM:HOG000154184 Genevestigator:P0C507
Uniprot:P0C507
Length = 1513
Score = 118 (46.6 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 20/56 (35%), Positives = 39/56 (69%)
Query: 384 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHY-DC 438
++++ GL+ +E+ G R+G++DTAV+TA+ GY+ RRL++ ++ ++V DC
Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVRRRDC 220
Score = 100 (40.3 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 1336 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1394
L+ ITR +N Q + SF+ET VL AA D ++G+ EN+++G + +GTG
Sbjct: 1396 LLGITRVSLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 1452
Score = 100 (40.3 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 819 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 877
L+ ITR +N Q + SF+ET VL AA D ++G+ EN+++G + +GTG
Sbjct: 1396 LLGITRVSLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 1452
Score = 44 (20.5 bits), Expect = 1.2e-05, Sum P(5) = 1.2e-05
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 660 NE-RQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIF--NEDVLRELMGSGD 716
NE R L +F +D+L+E G++ L + H + K +RI+ N +R +
Sbjct: 916 NEGRNLATLFPQDLLQE---EGNLQLRLVN-FISHENSKLTQRIYHTNSQFVRTCL---- 967
Query: 717 VISELEKEWEKLCEDREALREIFSSG 742
V++ ++E E E R +L EI ++G
Sbjct: 968 VLNWEQEEKE---EARASLVEIRANG 990
Score = 42 (19.8 bits), Expect = 1.2e-05, Sum P(5) = 1.2e-05
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 1294 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 1333
L I R S+ ++ V + G+ ++ RH+ ++ +T+K
Sbjct: 1317 LTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSK 1356
Score = 41 (19.5 bits), Expect = 1.2e-05, Sum P(5) = 1.2e-05
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 459 GEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLRNVSSLRRVVNS 504
G +EH+ +L ++K D++ F E L SSL+ + NS
Sbjct: 773 GVLIEHRGTKEFSLKYQKEVDRFFFI-LQELHILPRSSSLKVLDNS 817
Score = 40 (19.1 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 783 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 816
R S+ ++ V + G+ ++ RH+ ++ +T+K
Sbjct: 1323 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSK 1356
Score = 39 (18.8 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 28/136 (20%), Positives = 54/136 (39%)
Query: 425 LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYR-- 482
+I+A + + TV G+++ Y D L E R + K E +
Sbjct: 1225 VIRAAKPYLATTGATVHGHYGEIL---YKGDRLVTFIYEKARSSDITQGLPKVEQIFEAR 1281
Query: 483 ----FDPSNERPTLRNVSSLRRVVNSK-PLLIGCWKLTSVEKEM---NTVLQFY---GLY 531
P+ ER + R++ LIG +LT + + N + + Y G+
Sbjct: 1282 SIDSLSPNLERRIEDWNERIPRILGGPWGFLIGA-ELTIAQSRISLVNKIQKVYRSQGVQ 1340
Query: 532 VNYRHLALLCDVMTAK 547
++ RH+ ++ +T+K
Sbjct: 1341 IHNRHIEIIIRQVTSK 1356
>UNIPROTKB|P0C508 [details] [associations]
symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AY522329
GO:GO:0003899 ProtClustDB:CHL00117 TIGRFAMs:TIGR02388
RefSeq:YP_654208.1 ProteinModelPortal:P0C508 GeneID:4126924
Gramene:P0C508 Uniprot:P0C508
Length = 1513
Score = 118 (46.6 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 20/56 (35%), Positives = 39/56 (69%)
Query: 384 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHY-DC 438
++++ GL+ +E+ G R+G++DTAV+TA+ GY+ RRL++ ++ ++V DC
Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVRRRDC 220
Score = 100 (40.3 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 1336 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1394
L+ ITR +N Q + SF+ET VL AA D ++G+ EN+++G + +GTG
Sbjct: 1396 LLGITRVSLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 1452
Score = 100 (40.3 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 819 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 877
L+ ITR +N Q + SF+ET VL AA D ++G+ EN+++G + +GTG
Sbjct: 1396 LLGITRVSLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 1452
Score = 44 (20.5 bits), Expect = 1.2e-05, Sum P(5) = 1.2e-05
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 660 NE-RQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIF--NEDVLRELMGSGD 716
NE R L +F +D+L+E G++ L + H + K +RI+ N +R +
Sbjct: 916 NEGRNLATLFPQDLLQE---EGNLQLRLVN-FISHENSKLTQRIYHTNSQFVRTCL---- 967
Query: 717 VISELEKEWEKLCEDREALREIFSSG 742
V++ ++E E E R +L EI ++G
Sbjct: 968 VLNWEQEEKE---EARASLVEIRANG 990
Score = 42 (19.8 bits), Expect = 1.2e-05, Sum P(5) = 1.2e-05
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 1294 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 1333
L I R S+ ++ V + G+ ++ RH+ ++ +T+K
Sbjct: 1317 LTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSK 1356
Score = 41 (19.5 bits), Expect = 1.2e-05, Sum P(5) = 1.2e-05
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 459 GEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLRNVSSLRRVVNS 504
G +EH+ +L ++K D++ F E L SSL+ + NS
Sbjct: 773 GVLIEHRGTKEFSLKYQKEVDRFFFI-LQELHILPRSSSLKVLDNS 817
Score = 40 (19.1 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 783 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 816
R S+ ++ V + G+ ++ RH+ ++ +T+K
Sbjct: 1323 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSK 1356
Score = 39 (18.8 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 28/136 (20%), Positives = 54/136 (39%)
Query: 425 LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYR-- 482
+I+A + + TV G+++ Y D L E R + K E +
Sbjct: 1225 VIRAAKPYLATTGATVHGHYGEIL---YKGDRLVTFIYEKARSSDITQGLPKVEQIFEAR 1281
Query: 483 ----FDPSNERPTLRNVSSLRRVVNSK-PLLIGCWKLTSVEKEM---NTVLQFY---GLY 531
P+ ER + R++ LIG +LT + + N + + Y G+
Sbjct: 1282 SIDSLSPNLERRIEDWNERIPRILGGPWGFLIGA-ELTIAQSRISLVNKIQKVYRSQGVQ 1340
Query: 532 VNYRHLALLCDVMTAK 547
++ RH+ ++ +T+K
Sbjct: 1341 IHNRHIEIIIRQVTSK 1356
>UNIPROTKB|P0C509 [details] [associations]
symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:X15901 EMBL:AY522330
GO:GO:0003899 eggNOG:COG0086 KO:K03046 ProtClustDB:CHL00117
TIGRFAMs:TIGR02388 PIR:JQ0215 RefSeq:NP_039375.1
ProteinModelPortal:P0C509 STRING:P0C509 GeneID:3131434
KEGG:osa:3131434 Gramene:P0C509 Uniprot:P0C509
Length = 1513
Score = 118 (46.6 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 20/56 (35%), Positives = 39/56 (69%)
Query: 384 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHY-DC 438
++++ GL+ +E+ G R+G++DTAV+TA+ GY+ RRL++ ++ ++V DC
Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVRRRDC 220
Score = 100 (40.3 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 1336 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1394
L+ ITR +N Q + SF+ET VL AA D ++G+ EN+++G + +GTG
Sbjct: 1396 LLGITRVSLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 1452
Score = 100 (40.3 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 819 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 877
L+ ITR +N Q + SF+ET VL AA D ++G+ EN+++G + +GTG
Sbjct: 1396 LLGITRVSLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 1452
Score = 44 (20.5 bits), Expect = 1.2e-05, Sum P(5) = 1.2e-05
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 660 NE-RQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIF--NEDVLRELMGSGD 716
NE R L +F +D+L+E G++ L + H + K +RI+ N +R +
Sbjct: 916 NEGRNLATLFPQDLLQE---EGNLQLRLVN-FISHENSKLTQRIYHTNSQFVRTCL---- 967
Query: 717 VISELEKEWEKLCEDREALREIFSSG 742
V++ ++E E E R +L EI ++G
Sbjct: 968 VLNWEQEEKE---EARASLVEIRANG 990
Score = 42 (19.8 bits), Expect = 1.2e-05, Sum P(5) = 1.2e-05
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 1294 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 1333
L I R S+ ++ V + G+ ++ RH+ ++ +T+K
Sbjct: 1317 LTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSK 1356
Score = 41 (19.5 bits), Expect = 1.2e-05, Sum P(5) = 1.2e-05
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 459 GEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLRNVSSLRRVVNS 504
G +EH+ +L ++K D++ F E L SSL+ + NS
Sbjct: 773 GVLIEHRGTKEFSLKYQKEVDRFFFI-LQELHILPRSSSLKVLDNS 817
Score = 40 (19.1 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 783 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 816
R S+ ++ V + G+ ++ RH+ ++ +T+K
Sbjct: 1323 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSK 1356
Score = 39 (18.8 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 28/136 (20%), Positives = 54/136 (39%)
Query: 425 LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYR-- 482
+I+A + + TV G+++ Y D L E R + K E +
Sbjct: 1225 VIRAAKPYLATTGATVHGHYGEIL---YKGDRLVTFIYEKARSSDITQGLPKVEQIFEAR 1281
Query: 483 ----FDPSNERPTLRNVSSLRRVVNSK-PLLIGCWKLTSVEKEM---NTVLQFY---GLY 531
P+ ER + R++ LIG +LT + + N + + Y G+
Sbjct: 1282 SIDSLSPNLERRIEDWNERIPRILGGPWGFLIGA-ELTIAQSRISLVNKIQKVYRSQGVQ 1340
Query: 532 VNYRHLALLCDVMTAK 547
++ RH+ ++ +T+K
Sbjct: 1341 IHNRHIEIIIRQVTSK 1356
>UNIPROTKB|Q6ENI2 [details] [associations]
symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AP006728
GO:GO:0003899 RefSeq:YP_052741.1 ProteinModelPortal:Q6ENI2
GeneID:2885930 Gramene:Q6ENI2 ProtClustDB:CHL00117
TIGRFAMs:TIGR02388 Uniprot:Q6ENI2
Length = 1513
Score = 118 (46.6 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 20/56 (35%), Positives = 39/56 (69%)
Query: 384 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHY-DC 438
++++ GL+ +E+ G R+G++DTAV+TA+ GY+ RRL++ ++ ++V DC
Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVRRRDC 220
Score = 100 (40.3 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 1336 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1394
L+ ITR +N Q + SF+ET VL AA D ++G+ EN+++G + +GTG
Sbjct: 1396 LLGITRVSLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 1452
Score = 100 (40.3 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 819 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 877
L+ ITR +N Q + SF+ET VL AA D ++G+ EN+++G + +GTG
Sbjct: 1396 LLGITRVSLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 1452
Score = 44 (20.5 bits), Expect = 1.2e-05, Sum P(5) = 1.2e-05
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 660 NE-RQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIF--NEDVLRELMGSGD 716
NE R L +F +D+L+E G++ L + H + K +RI+ N +R +
Sbjct: 916 NEGRNLATLFPQDLLQE---EGNLQLRLVN-FISHENSKLTQRIYHTNSQFVRTCL---- 967
Query: 717 VISELEKEWEKLCEDREALREIFSSG 742
V++ ++E E E R +L EI ++G
Sbjct: 968 VLNWEQEEKE---EARASLVEIRANG 990
Score = 42 (19.8 bits), Expect = 1.2e-05, Sum P(5) = 1.2e-05
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 1294 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 1333
L I R S+ ++ V + G+ ++ RH+ ++ +T+K
Sbjct: 1317 LTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSK 1356
Score = 41 (19.5 bits), Expect = 1.2e-05, Sum P(5) = 1.2e-05
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 459 GEAVEHQRIDTVALSHKKFEDKYRFDPSNERPTLRNVSSLRRVVNS 504
G +EH+ +L ++K D++ F E L SSL+ + NS
Sbjct: 773 GVLIEHRGTKEFSLKYQKEVDRFFFI-LQELHILPRSSSLKVLDNS 817
Score = 40 (19.1 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 783 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 816
R S+ ++ V + G+ ++ RH+ ++ +T+K
Sbjct: 1323 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSK 1356
Score = 39 (18.8 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 28/136 (20%), Positives = 54/136 (39%)
Query: 425 LIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYR-- 482
+I+A + + TV G+++ Y D L E R + K E +
Sbjct: 1225 VIRAAKPYLATTGATVHGHYGEIL---YKGDRLVTFIYEKARSSDITQGLPKVEQIFEAR 1281
Query: 483 ----FDPSNERPTLRNVSSLRRVVNSK-PLLIGCWKLTSVEKEM---NTVLQFY---GLY 531
P+ ER + R++ LIG +LT + + N + + Y G+
Sbjct: 1282 SIDSLSPNLERRIEDWNERIPRILGGPWGFLIGA-ELTIAQSRISLVNKIQKVYRSQGVQ 1340
Query: 532 VNYRHLALLCDVMTAK 547
++ RH+ ++ +T+K
Sbjct: 1341 IHNRHIEIIIRQVTSK 1356
>UNIPROTKB|P11414 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
species:10029 "Cricetulus griseus" [GO:0005634 "nucleus"
evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006468 "protein
phosphorylation" evidence=ISS] [GO:0004672 "protein kinase
activity" evidence=ISS] InterPro:IPR000684 Pfam:PF05001
PROSITE:PS00115 GO:GO:0003677 GO:GO:0006468 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 EMBL:M19538 PIR:A27677
ProteinModelPortal:P11414 Uniprot:P11414
Length = 467
Score = 125 (49.1 bits), Expect = 0.00058, P = 0.00058
Identities = 34/78 (43%), Positives = 38/78 (48%)
Query: 875 GTGCFDLLLDAEKCKDGIEIPLATXXXXXXXXXXXXXXXTPSSMSPQMTPWAQS-TPAYN 933
GTGCFDLLLDAEKCK G+EIP T + SP A +P Y+
Sbjct: 2 GTGCFDLLLDAEKCKYGMEIP--TNIPGLGAAGRSGMTPGAAGFSPSAASDASGFSPGYS 59
Query: 934 ALMSPGAAMTPGGPGFSP 951
SP TPG PG SP
Sbjct: 60 PAWSP----TPGSPG-SP 72
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1791 1718 0.00089 125 3 11 22 0.38 34
40 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 86
No. of states in DFA: 631 (67 KB)
Total size of DFA: 702 KB (2301 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:05
No. of threads or processors used: 24
Search cpu time: 148.72u 0.11s 148.83t Elapsed: 00:02:19
Total cpu time: 148.79u 0.12s 148.91t Elapsed: 00:02:26
Start: Thu Aug 15 13:12:16 2013 End: Thu Aug 15 13:14:42 2013