RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3015
(1791 letters)
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 385 bits (990), Expect = e-111
Identities = 172/461 (37%), Positives = 262/461 (56%), Gaps = 20/461 (4%)
Query: 953 VAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQV- 1011
+ G++++ + A +A LF CL+RS L T+ V + YRL+ +AF+W++ IE +F ++ V
Sbjct: 999 LRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVH 1058
Query: 1012 ----IACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 1067
+ + Q++ E +A +
Sbjct: 1059 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVY 1118
Query: 1068 MGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDF 1127
+ K + L VT + IYYDPDP++TVIPED+E + +++ + D
Sbjct: 1119 LEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDE 1178
Query: 1128 DPTR----ISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLR 1183
+ + SPWLLR+ELDR M DK LTM + E+I F +DL I+++DN EKL++R
Sbjct: 1179 EAEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIR 1238
Query: 1184 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1243
R++ DA + E+D L+ IE ML ++TL+G+E I +V M
Sbjct: 1239 CRVVR------PKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMM-----KYD 1287
Query: 1244 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1303
R + + +GE+ +W+LETDG +L +V++ +DP R ++N +I +VLGIEA R ++
Sbjct: 1288 RKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAAL 1347
Query: 1304 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1363
KE+ V+ G YVNYRH+ALL DVMT +G L ++TRHG NR +TGALMRCSFEETV++
Sbjct: 1348 YKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEI 1407
Query: 1364 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1404
L +A A AE D RGVSEN+I+GQ+ +GTG FD+++D E
Sbjct: 1408 LFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEES 1448
Score = 280 bits (718), Expect = 4e-77
Identities = 204/423 (48%), Positives = 264/423 (62%), Gaps = 55/423 (13%)
Query: 71 NQEQMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDS 130
+Q++N+L ++P WDG +P P I+KPKPLW+GKQ+ S+ IP +++ R
Sbjct: 541 ELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTT----- 595
Query: 131 GPYQWISPGDTKVVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVCGRFYGNIQTV 190
+SP D +++ G ++ G++ KK++G+S+G L+H+ E G +VC + +GNIQ V
Sbjct: 596 ----LLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKV 651
Query: 191 VNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGHSIGI 250
VN WLL G S GIGDTIAD T EI I +AK+ V++V ++A L G
Sbjct: 652 VNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGM---- 707
Query: 251 GDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 310
TLR++FE+ V R LN+AR
Sbjct: 708 ------------------------------------------TLRESFEDNVVRFLNEAR 725
Query: 311 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 370
DK G A+ +L + NN+K MV+AGSKGS INI+Q+ ACVGQQ+VEGKRI FGF RTLPH
Sbjct: 726 DKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPH 785
Query: 371 FIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 430
F KDDY PES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+E
Sbjct: 786 FSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALE 845
Query: 431 SVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFEDKYRFDPSNERP 490
+MVHYD T RNS+G +IQ YGEDG+ +E Q +DT+ S FE +YR D N
Sbjct: 846 DIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDH 905
Query: 491 TLR 493
TL
Sbjct: 906 TLD 908
Score = 176 bits (447), Expect = 7e-45
Identities = 91/321 (28%), Positives = 152/321 (47%), Gaps = 44/321 (13%)
Query: 571 FEETVDVLMDAAAHAEADPMRGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGL 630
+ L+D A D ++ R ++ + M D T+ VG+ I+ + D
Sbjct: 1168 IIQLHFSLLDEEAEQSFDQQSPWLLR--LELDRAAMNDKDLTM-GQVGERIKQTFKNDLF 1224
Query: 631 CGEAVEH--QRIDTVALSHKKFEDKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEK 688
+ ++ + I + K D + + L++I ++ +
Sbjct: 1225 VIWSEDNDEKLIIRCRVVRPKSLDAET-EAEEDHMLKKI-----------ENTMLENITL 1272
Query: 689 EMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREIFSSGESNV-- 746
V++ R + + + +G+ + E EW L D L E+ + +
Sbjct: 1273 RGVENIE----RVVMMKYDRKVPSPTGEYVKE--PEW-VLETDGVNLSEVMTVPGIDPTR 1325
Query: 747 VLPCNLMEVIFILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMNTVLQFYGLYVNYRHL 806
+ + ++++ +L G E + R ++ KE+ V+ G YVNYRH+
Sbjct: 1326 IYTNSFIDIMEVL------GIE------------AGRAALYKEVYNVIASDGSYVNYRHM 1367
Query: 807 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 866
ALL DVMT +G L ++TRHG NR +TGALMRCSFEETV++L +A A AE D RGVSEN+
Sbjct: 1368 ALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENV 1427
Query: 867 IMGQLPRMGTGCFDLLLDAEK 887
I+GQ+ +GTG FD+++D E
Sbjct: 1428 ILGQMAPIGTGAFDVMIDEES 1448
Score = 119 bits (300), Expect = 1e-27
Identities = 46/87 (52%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 519 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 578
KE+ V+ G YVNYRH+ALL DVMT +G L ++TRHG NR +TGALMRCSFEETV++L
Sbjct: 1349 KEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEIL 1408
Query: 579 MDAAAHAEADPMRGYIQR----RLIKA 601
+A A AE D RG + ++
Sbjct: 1409 FEAGASAELDDCRGVSENVILGQMAPI 1435
Score = 109 bits (274), Expect = 2e-24
Identities = 88/259 (33%), Positives = 120/259 (46%), Gaps = 10/259 (3%)
Query: 1004 NRFQQAQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 1063
+ AQ+ ACVGQQ+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EF
Sbjct: 753 SFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEF 812
Query: 1064 FFHAMGGREGLIDTAVKTAETVNVLVFLFQVTANTAIYYD---PDPQNTVIP---EDQEF 1117
FFHAMGGREGLIDTAVKTAET + L + + ++YD + VI +
Sbjct: 813 FFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGM 872
Query: 1118 VNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNA 1177
+ E D S + ++ E + GD + D+
Sbjct: 873 DAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEY 932
Query: 1178 EKLV----LRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVY 1233
++LV + ++ + +++ I+ SD+T++ I K
Sbjct: 933 KQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDL 992
Query: 1234 MHLPQTDSKKRIIITESGE 1252
K II +
Sbjct: 993 QENLLVLRGKNEIIQNAQR 1011
Score = 93.8 bits (232), Expect = 1e-19
Identities = 60/231 (25%), Positives = 98/231 (42%), Gaps = 40/231 (17%)
Query: 1465 TFLEMKDFKKPPQKGFGLLTLTLMVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTK 1524
T + + F + + ++ I + + TP + + +
Sbjct: 1076 TQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRS 1135
Query: 1525 R--DVFLDKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTR----ISPWLLRIE 1578
L VT + IYYDPDP++TVIPED+E + +++ + D + + SPWLLR+E
Sbjct: 1136 AIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLE 1195
Query: 1579 LDRKRMTDKKLTMEAISEKINAGFGDDLNTPLSPTDKKLTMEAISEKINAGFGDDLNCIF 1638
LDR M DK LTM + E+I F +DL I+
Sbjct: 1196 LDRAAMNDKDLTMGQVGERIKQTFKNDLF----------------------------VIW 1227
Query: 1639 NDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEETDRSFVKV 1689
++DN EKL++R R++ DA + E+D L+ IE T + +
Sbjct: 1228 SEDNDEKLIIRCRVVR------PKSLDAETEAEEDHMLKKIENTMLENITL 1272
Score = 91.4 bits (226), Expect = 8e-19
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 35/165 (21%)
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKFE 651
GYIQRRL+KA+E +MVHYD T RNS+G +IQ YGEDG+ +E Q +DT+ S FE
Sbjct: 834 GYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFE 893
Query: 652 DKYRFDPSNERQLRRIFNEDVLRELMGSGDVISELEKEMVDHFSWKQLRRIFNEDVLREL 711
+YR D N + E+
Sbjct: 894 KRYRVDLLNTD-----------------------------------HTLDPSLLESGSEI 918
Query: 712 MGSGDVISELEKEWEKLCEDREALREIFSSGESNVVLPCNLMEVI 756
+G + L++E+++L +DR+ LRE+F GE+N LP N+ +I
Sbjct: 919 LGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRII 963
Score = 62.2 bits (150), Expect = 6e-10
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 28 PYEESIILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQ 72
++ LG + F+RP+WM++T LPVPP VRP++ + S R +
Sbjct: 214 SVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGE 258
Score = 46.8 bits (110), Expect = 3e-05
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 24/131 (18%)
Query: 1487 LMVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVTANTAIYYDPDPQN 1546
+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 498 AELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIEL--------------- 542
Query: 1547 TVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDL 1606
+ +N+ Y +PD+D +P I + + K++ AI I+ D+
Sbjct: 543 ------DQVLNMLYWVPDWDGVIPTP---AIIKPKPLWSGKQILSVAIPNGIHLQRFDEG 593
Query: 1607 NTPLSPTDKKL 1617
T LSP D +
Sbjct: 594 TTLLSPKDNGM 604
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
[TaxId: 274]}
Length = 1504
Score = 177 bits (449), Expect = 5e-45
Identities = 62/446 (13%), Positives = 130/446 (29%), Gaps = 93/446 (20%)
Query: 74 QMMNILMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMTRTHSTHPDDEDSGPY 133
L + + P + + G+ + P + H +
Sbjct: 807 TPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEALLAVAHGIVDLQDVVTVR 866
Query: 134 QWISPGDTK-------------VVVEHGSLLMGILCKKSLGTSSGSLLHICFLELGHEVC 180
+T V E + + L S L++ FL LG E
Sbjct: 867 YMGKRLETSPGRILFARIVAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRLGMEKT 926
Query: 181 GRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDL 240
R ++ + G +IGI D + + ++ A
Sbjct: 927 ARLLDALKYYGFTFSTTSGITIGIDDAVIPEEKKQYLEEA-------------------- 966
Query: 241 EPTPGHSIGIGDTIADPQTYLEIQMAIKKAKEDVIEVIQKAHNMDLEPTPGNTLRQTFEN 300
+ + I++A+ M G + +
Sbjct: 967 -------------------------------DRKLLQIEQAYEM------GFLTDRERYD 989
Query: 301 QVNRILNDARDKTGGSAKKSLTE---YNNLKAMVVAGSKGSNINISQVIACVGQQNVEGK 357
Q+ ++ + +K + K+ E +N L M +G++G+ I Q+
Sbjct: 990 QILQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLR-------- 1041
Query: 358 RIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAE 417
++ G V +S+ GLT E+F + G R+G DTA++TA+
Sbjct: 1042 ------------GLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTAD 1089
Query: 418 TGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKF 477
+GY+ R+L+ ++V + + + E + I+
Sbjct: 1090 SGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRKRADIEAGLYGRVLA 1149
Query: 478 EDKYRFDPSNERPTLRNVSSLRRVVN 503
+ E ++ + ++
Sbjct: 1150 REVEVLGVRLEEGRYLSMDDVHLLIK 1175
Score = 134 bits (337), Expect = 7e-32
Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 24/146 (16%)
Query: 1256 IADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYG 1315
+ D +E +MK + D R + E +EA+ +
Sbjct: 1362 LHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLE---KWDVEALNE-------------- 1404
Query: 1316 LYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADP 1375
R +A + K LM +T+ ++ L SF+ T VL +AA + D
Sbjct: 1405 -----RLIAEGKTPVAWKPLLMGVTKSALST--KSWLSAASFQNTTHVLTEAAIAGKKDE 1457
Query: 1376 MRGVSENIIMGQLPRMGTGCFDLLLD 1401
+ G+ EN+I+G+L GTG +
Sbjct: 1458 LIGLKENVILGRLIPAGTGSDFVRFT 1483
Score = 127 bits (320), Expect = 7e-30
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 801 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 860
+N R +A + K LM +T+ ++ L SF+ T VL +AA + D +
Sbjct: 1402 LNERLIAEGKTPVAWKPLLMGVTKSALST--KSWLSAASFQNTTHVLTEAAIAGKKDELI 1459
Query: 861 GVSENIIMGQLPRMGTGCFDLLLD 884
G+ EN+I+G+L GTG +
Sbjct: 1460 GLKENVILGRLIPAGTGSDFVRFT 1483
Score = 91.4 bits (226), Expect = 7e-19
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 20/90 (22%)
Query: 532 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 591
+N R +A + K LM +T+ ++ L SF+ T VL +AA + D +
Sbjct: 1402 LNERLIAEGKTPVAWKPLLMGVTKSALST--KSWLSAASFQNTTHVLTEAAIAGKKDELI 1459
Query: 592 GYIQRRLIKAMESVMVHYDCTVRNSVGQLI 621
G +K E+V+ +G+LI
Sbjct: 1460 G------LK--ENVI----------LGRLI 1471
Score = 64.4 bits (156), Expect = 1e-10
Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 15/162 (9%)
Query: 1036 HFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETVNVLVFLFQVT 1095
++ G V +S+ GLT E+F + G R+G DTA++TA++ + L VT
Sbjct: 1042 GLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVT 1101
Query: 1096 ANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELD-RKRMTDKKLTME 1154
+ +++V PD LR D + + L E
Sbjct: 1102 HEIVVREA-------DCGTTNYISVPLFQPDEV---TRSLRLRKRADIEAGLYGRVLARE 1151
Query: 1155 AISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQD 1196
+ G L + D+ L+ + ++
Sbjct: 1152 VEVLGVRLEEGRYL----SMDDVHLLIKAAEAGEIQEVPVRS 1189
Score = 52.9 bits (126), Expect = 4e-07
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 33 IILGMDPKFARPDWMLVTVLPVPPLSVRPAVVMHGSARNQEQMMNILM 80
++ RP+WM++ +PV P +RP V + G + ++
Sbjct: 497 VVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYR 544
Score = 39.4 bits (91), Expect = 0.006
Identities = 8/71 (11%), Positives = 19/71 (26%)
Query: 591 RGYIQRRLIKAMESVMVHYDCTVRNSVGQLIQLRYGEDGLCGEAVEHQRIDTVALSHKKF 650
GY+ R+L+ ++V + + + E + I+
Sbjct: 1090 SGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRKRADIEAGLYGRVLA 1149
Query: 651 EDKYRFDPSNE 661
+ E
Sbjct: 1150 REVEVLGVRLE 1160
Score = 38.6 bits (89), Expect = 0.009
Identities = 7/62 (11%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 1489 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTK-----RDVFLDKVTANTAIYYDPD 1543
++ +++P + P+ +D + + +T+ + L+ T A+
Sbjct: 758 ARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHER 817
Query: 1544 PQ 1545
+
Sbjct: 818 GE 819
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 347
Score = 30.8 bits (69), Expect = 1.5
Identities = 16/112 (14%), Positives = 41/112 (36%), Gaps = 14/112 (12%)
Query: 684 SELEKEMVDHFSWKQLRRIFNEDVLRELMGSGDVISELEKEWEKLCEDREALREIFSSGE 743
+L + DH + L + + S + ++ W+ C +R IF +
Sbjct: 50 KQLRQACEDHVQAQILP------FREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLD 103
Query: 744 SNVVLP----CNLMEVIFILQRWKLWGNENLRFLCKIIFVLSVRKSVEKEMN 791
VL ++ ++ L R + ++ ++ + + +E+E +
Sbjct: 104 RTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKT----IDGILLLIERERS 151
>d1iwga6 d.225.1.1 (A:725-812) Multidrug efflux transporter AcrB TolC
docking domain; DN and DC subdomains {Escherichia coli
[TaxId: 562]}
Length = 88
Score = 26.9 bits (59), Expect = 7.0
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 1137 LRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQD 1196
+I++D+++ +++ I+ + A +G F D K V + S+
Sbjct: 3 FKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKV----YVMSEAKYRML 58
Query: 1197 EED 1199
+D
Sbjct: 59 PDD 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.408
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 6,792,570
Number of extensions: 334860
Number of successful extensions: 883
Number of sequences better than 10.0: 1
Number of HSP's gapped: 872
Number of HSP's successfully gapped: 24
Length of query: 1791
Length of database: 2,407,596
Length adjustment: 98
Effective length of query: 1693
Effective length of database: 1,062,056
Effective search space: 1798060808
Effective search space used: 1798060808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.3 bits)